Citrus Sinensis ID: 019237

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MVMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY
Secondary Structure (PSIPRED)
ccEEccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccEEEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccHHHHcccccccEEEEcccccccccccccccccccccccEEEcccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHHHHccccccccEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEcccccccccccHHHcccccccEEEccccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEEEccccccccccccHHHcccccccEEEEccccccccccHHHccHcccccccEEEcccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHHHHcccccccccccccccccccccccHccccc
Coil and Loop (DISEMBL)
MVMRCIDEEREALLTFKQSMVDKYGvlsswgrdndkrdcckwrgvrcsnktghVKVLNLrrsddenargkvlkgtispallklhdlrhldlsnnhfggspvpefiGSLSRLRYLNLScgtsllkvprpfqylSGLVYLRlensnlfslgSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLrscalppinpsfiwhfnlstsietldlsdnnlpsssvypwlfNLSRNILVLDLAFNSLRGSIPEAFQHMVSLkslhltdneleggipkffgnmcslnrlflphnklsGELSEMIQNLsggctmnsLEGVLEIIKSHragrksmrplDWIAIAY
Flexible Loop (DISEMBL)
MVMRCIDEEREALLTFKQSMVDKygvlsswgrdndkrdcckwrgvrcsnktghvkvlnlrrsddenargkVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKshragrksmrpldwiaiay
Low Complexity Region (SEG)
MVMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPAllklhdlrhldlSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFslgslewlshlsslrhldlsYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETldlsdnnlpsssVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY
Disordered region (IsUnstruct)
**********EALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLR********GKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHR*******PLDWIAI**
Disordered Region (DISOPRED)
*VMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY
Disordered Region (DISEMBL)
MVMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY
Disordered Region (DISPRO)
MVMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q6XAT2	967	LRR receptor-like serine/	no	no	0.840	0.298	0.299	3e-24
C0LGW6	966	LRR receptor-like serine/	no	no	0.851	0.303	0.295	1e-22
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.845	0.288	0.322	2e-21
Q42371	976	LRR receptor-like serine/	no	no	0.848	0.299	0.317	4e-21
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.834	0.260	0.307	4e-21
Q00874	372	DNA-damage-repair/tolerat	no	no	0.848	0.784	0.293	5e-20
Q9FL28	1173	LRR receptor-like serine/	no	no	0.808	0.236	0.330	6e-20
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.828	0.228	0.301	4e-19
Q9C9H7	847	Receptor-like protein 12	no	no	0.854	0.347	0.293	5e-19
O82318	960	Probably inactive leucine	no	no	0.799	0.286	0.326	5e-18

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 35/324 (10%)

Query: 6   IDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDE 65
           ++ E +AL+  K S  +   +L  W  D    D C WRGV C N + +V  LNL   +  
Sbjct: 28  MNNEGKALMAIKASFSNVANMLLDW-DDVHNHDFCSWRGVFCDNVSLNVVSLNLSNLN-- 84

Query: 66  NARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV 125
                 L G IS AL  L +L+ +DL  N  GG  +P+ IG+   L Y++ S       +
Sbjct: 85  ------LGGEISSALGDLMNLQSIDLQGNKLGGQ-IPDEIGNCVSLAYVDFSTNLLFGDI 137

Query: 126 PRPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSD----WFQVV 180
           P     L  L +L L+N+ L   G +   L+ + +L+ LDL+   LT        W +V+
Sbjct: 138 PFSISKLKQLEFLNLKNNQL--TGPIPATLTQIPNLKTLDLARNQLTGEIPRLLYWNEVL 195

Query: 181 AKLRSLKTLVLRSCALPPINPSFIWHFNL---------------STSIETLDLSDNNLPS 225
             L     ++  + +      + +W+F++                TS E LD+S N +  
Sbjct: 196 QYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQI-- 253

Query: 226 SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC 285
           + V P+     + +  L L  N L G IPE    M +L  L L+DNEL G IP   GN+ 
Sbjct: 254 TGVIPYNIGFLQ-VATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILGNLS 312

Query: 286 SLNRLFLPHNKLSGELSEMIQNLS 309
              +L+L  NKL+G++   + N+S
Sbjct: 313 FTGKLYLHGNKLTGQIPPELGNMS 336

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 148/328 (45%), Gaps = 35/328 (10%)

Query: 2   VMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRR 61
           V   ++ E +AL+  K S  +   +L  W  D    D C WRGV C N +  V  LNL  
Sbjct: 22  VASAMNNEGKALMAIKGSFSNLVNMLLDW-DDVHNSDLCSWRGVFCDNVSYSVVSLNLSS 80

Query: 62  SDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTS 121
            +        L G ISPA+  L +L+ +DL  N   G  +P+ IG+ + L YL+LS    
Sbjct: 81  LN--------LGGEISPAIGDLRNLQSIDLQGNKLAGQ-IPDEIGNCASLVYLDLSENLL 131

Query: 122 LLKVPRPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSD----W 176
              +P     L  L  L L+N+ L   G +   L+ + +L+ LDL+  +LT        W
Sbjct: 132 YGDIPFSISKLKQLETLNLKNNQL--TGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYW 189

Query: 177 FQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL---------------STSIETLDLSDN 221
            +V+  L     ++  + +      + +W+F++                TS + LD+S N
Sbjct: 190 NEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYN 249

Query: 222 NLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFF 281
            +     Y   F     +  L L  N L G IPE    M +L  L L+DNEL G IP   
Sbjct: 250 QITGEIPYNIGF---LQVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPIL 306

Query: 282 GNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           GN+    +L+L  N L+G +   + N+S
Sbjct: 307 GNLSFTGKLYLHGNMLTGPIPSELGNMS 334

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 160/338 (47%), Gaps = 47/338 (13%)

Query: 7   DEEREALLTFK-QSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDE 65
           + +R+ALL FK Q   DK  VLSSW   N     C W+GV C  K   V  L L R    
Sbjct: 23  ETDRQALLQFKSQVSEDKRVVLSSW---NHSFPLCNWKGVTCGRKNKRVTHLELGRLQ-- 77

Query: 66  NARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV 125
                 L G ISP++  L  L  LDL  N FGG+ +P+ +G LSRL YL++  G + L+ 
Sbjct: 78  ------LGGVISPSIGNLSFLVSLDLYENFFGGT-IPQEVGQLSRLEYLDM--GINYLRG 128

Query: 126 PRPFQYL--SGLVYLRLENSNLFS-----LGSL------------------EWLSHLSSL 160
           P P      S L+ LRL+++ L       LGSL                    L +L+ L
Sbjct: 129 PIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLL 188

Query: 161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSD 220
             L LS+ NL    +    VA+L  + +L L +     + P  +++    +S++ L +  
Sbjct: 189 EQLALSHNNL--EGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNL---SSLKLLGIGY 243

Query: 221 NNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKF 280
           N+  S  + P L  L  N+L  ++  N   GSIP    ++ +L+ L + +N L G IP  
Sbjct: 244 NHF-SGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT- 301

Query: 281 FGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLE 318
           FGN+ +L  LFL  N L  + S  ++ L+       LE
Sbjct: 302 FGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLE 339

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 147/331 (44%), Gaps = 39/331 (11%)

Query: 1   MVMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLR 60
           +V     EE   LL  K+S  D   VL  W   +   D C WRGV C N T +V  LNL 
Sbjct: 18  LVATVTSEEGATLLEIKKSFKDVNNVLYDW-TTSPSSDYCVWRGVSCENVTFNVVALNLS 76

Query: 61  RSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGT 120
              D N     L G ISPA+  L  L  +DL  N   G  +P+ IG  S L+ L+LS   
Sbjct: 77  ---DLN-----LDGEISPAIGDLKSLLSIDLRGNRLSGQ-IPDEIGDCSSLQNLDLSFNE 127

Query: 121 SLLKVPRPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQV 179
               +P     L  L  L L+N+ L  +G +   LS + +L+ LDL+   L  S +  ++
Sbjct: 128 LSGDIPFSISKLKQLEQLILKNNQL--IGPIPSTLSQIPNLKILDLAQNKL--SGEIPRL 183

Query: 180 VAKLRSLKTLVLRSCALPP-INPSF-----IWHFNL---------------STSIETLDL 218
           +     L+ L LR   L   I+P       +W+F++                T+ + LDL
Sbjct: 184 IYWNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDL 243

Query: 219 SDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIP 278
           S N L     +   F     +  L L  N L G IP     M +L  L L+ N L G IP
Sbjct: 244 SYNQLTGEIPFDIGF---LQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIP 300

Query: 279 KFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
              GN+    +L+L  NKL+G +   + N+S
Sbjct: 301 PILGNLTFTEKLYLHSNKLTGSIPPELGNMS 331

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 147/309 (47%), Gaps = 22/309 (7%)

Query: 1   MVMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLR 60
           +++R ++EE   LL FK  + D  G L+SW + +   + C W G+ C++         LR
Sbjct: 19  ILVRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDS--NPCNWTGIACTH---------LR 67

Query: 61  RSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGT 120
                +  G  L GT+SP + KLH LR L++S N   G P+P+ +     L  L+L    
Sbjct: 68  TVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISG-PIPQDLSLCRSLEVLDLCTNR 126

Query: 121 SLLKVPRPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQV 179
               +P     +  L  L L  + LF  GS+   + +LSSL+ L +   NLT        
Sbjct: 127 FHGVIPIQLTMIITLKKLYLCENYLF--GSIPRQIGNLSSLQELVIYSNNLTGVIP--PS 182

Query: 180 VAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 239
           +AKLR L+ +         + PS I       S++ L L++N L  S   P      +N+
Sbjct: 183 MAKLRQLRIIRAGRNGFSGVIPSEISG---CESLKVLGLAENLLEGS--LPKQLEKLQNL 237

Query: 240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
             L L  N L G IP +  ++  L+ L L +N   G IP+  G +  + RL+L  N+L+G
Sbjct: 238 TDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTG 297

Query: 300 ELSEMIQNL 308
           E+   I NL
Sbjct: 298 EIPREIGNL 306

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 149/310 (48%), Gaps = 18/310 (5%)

Query: 5   CIDEEREALLTFKQSMVD-KYGVLSSWGRDNDKRDCCK-WRGVRCSNKTGHVKVLNLR-R 61
           C  +++ AL  FK S+ +   G+ ++W   ++  DCCK W G+ C   +G V  ++LR  
Sbjct: 27  CSPKDQTALNAFKSSLSEPNLGIFNTW---SENTDCCKEWYGISCDPDSGRVTDISLRGE 83

Query: 62  SDD----ENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS 117
           S+D    +  R   + G+I PA+  L  L  L L++       +P  I SL+ LR L+L+
Sbjct: 84  SEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDLA 143

Query: 118 CGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF 177
                 ++P     LS L  L L  + +    S E  + L+SL  ++L ++ LT++    
Sbjct: 144 GNKITGEIPAEIGKLSKLAVLNLAENQM----SGEIPASLTSL--IELKHLELTENGITG 197

Query: 178 QVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR 237
            + A   SLK L         +  S     +    +  LDLS N++    +  W+ N+ +
Sbjct: 198 VIPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKNHI-EGPIPEWMGNM-K 255

Query: 238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
            + +L+L  NSL G IP +      L   +L+ N LEG IP  FG+   L  L L HN L
Sbjct: 256 VLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSL 315

Query: 298 SGELSEMIQN 307
           SG + + + +
Sbjct: 316 SGRIPDSLSS 325

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 136/306 (44%), Gaps = 28/306 (9%)

Query: 1   MVMRCIDEEREALLTFKQSMV-DKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNL 59
           +  +  + E EAL +FK  +  D  GVLS W      R C  W G+ C + TGHV  ++L
Sbjct: 22  LAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHC-NWTGITC-DSTGHVVSVSL 79

Query: 60  RRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLR----YLN 115
                     K L+G +SPA+  L  L+ LDL++N F G  +P  IG L+ L     YLN
Sbjct: 80  LE--------KQLEGVLSPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLILYLN 130

Query: 116 LSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSD 175
              G+    +P     L  + YL L N NL S    E +   SSL  +   Y NLT    
Sbjct: 131 YFSGS----IPSGIWELKNIFYLDLRN-NLLSGDVPEEICKTSSLVLIGFDYNNLT--GK 183

Query: 176 WFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 235
             + +  L  L+  V     L    P  I       ++  LDLS N L  +   P  F  
Sbjct: 184 IPECLGDLVHLQMFVAAGNHLTGSIPVSIGTL---ANLTDLDLSGNQL--TGKIPRDFGN 238

Query: 236 SRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
             N+  L L  N L G IP    +  SL  L L DN+L G IP   GN+  L  L +  N
Sbjct: 239 LLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKN 298

Query: 296 KLSGEL 301
           KL+  +
Sbjct: 299 KLTSSI 304

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 150/308 (48%), Gaps = 23/308 (7%)

Query: 6   IDEEREALLTFKQSMV---DKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRS 62
           I+ + + LL  K+S+V    +   L  W  DN   + C W GV C N TG  +V+ L   
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDN--INYCSWTGVTCDN-TGLFRVIAL--- 76

Query: 63  DDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSL 122
              N  G  L G+ISP   +  +L HLDLS+N+  G P+P  + +L+ L  L L      
Sbjct: 77  ---NLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFSNQLT 132

Query: 123 LKVPRPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQVVA 181
            ++P     L  +  LR+ ++ L  +G + E L +L +L+ L L+   LT        + 
Sbjct: 133 GEIPSQLGSLVNIRSLRIGDNEL--VGDIPETLGNLVNLQMLALASCRLTGPIP--SQLG 188

Query: 182 KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241
           +L  +++L+L+   L    P+ + +    + +     ++N L  +   P       N+ +
Sbjct: 189 RLVRVQSLILQDNYLEGPIPAELGN---CSDLTVFTAAENML--NGTIPAELGRLENLEI 243

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301
           L+LA NSL G IP     M  L+ L L  N+L+G IPK   ++ +L  L L  N L+GE+
Sbjct: 244 LNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEI 303

Query: 302 SEMIQNLS 309
            E   N+S
Sbjct: 304 PEEFWNMS 311

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 167/351 (47%), Gaps = 57/351 (16%)

Query: 5   CIDEEREALLTFKQS--MVDKYGVLSSW-GRDNDKRDCCKWRGVRCSNKTGHVKVLNLRR 61
           C D++R+ALL F+    +   + +++ W G  N   DCC W GV C++K+G V  L++  
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPN 93

Query: 62  SDDENARGKVLKGTISPALLKLHDLRHLDLSN-NHFGGSP-------------------- 100
           +   N     LK   + +L KL  LRHLDL+N N +G  P                    
Sbjct: 94  TFLNN----YLK--TNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFV 147

Query: 101 --VPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLF-----SLGSLEW 153
             +P  IG+L++LR+L L+      ++P     LS LV L L ++ L      S+G L+ 
Sbjct: 148 GEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQ 207

Query: 154 LSHL------------SSLRHL-DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN 200
           L +L            SSL +L +L ++ LT +    +V A + +L  L + S     ++
Sbjct: 208 LRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLS 267

Query: 201 PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHM 260
            +    F   T +    LS NN   +S +P+  ++  N+   D+++NS  G  P++   +
Sbjct: 268 GNIPISFANLTKLSIFVLSSNNF--TSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLI 325

Query: 261 VSLKSLHLTDNELEGGIPKFFGNMCS---LNRLFLPHNKLSGELSEMIQNL 308
            SL+S++L +N+  G  P  F N  S   L  L L  N+L G + E I  L
Sbjct: 326 PSLESIYLQENQFTG--PIEFANTSSSTKLQDLILGRNRLHGPIPESISRL 374

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 153/337 (45%), Gaps = 62/337 (18%)

Query: 9   EREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENAR 68
           E E LL+FK S+ D    LSSW   +   D C W GV C+N +   +V++L  S  +N  
Sbjct: 31  ELELLLSFKSSIQDPLKHLSSWSYSS-TNDVCLWSGVVCNNIS---RVVSLDLSG-KNMS 85

Query: 69  GKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPE--FIGSLSRLRYLNLSCGTSLLKVP 126
           G++L    + A  +L  L+ ++LSNN+  G P+P   F  S   LRYLNLS       +P
Sbjct: 86  GQIL----TAATFRLPFLQTINLSNNNLSG-PIPHDIFTTSSPSLRYLNLSNNNFSGSIP 140

Query: 127 RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 186
           R F  L  L  L L N N+F+      +   S+LR LDL    LT     +  +  L  L
Sbjct: 141 RGF--LPNLYTLDLSN-NMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGY--LGNLSRL 195

Query: 187 KTLVLRSCALPPINPS-----------FIWHFNLS----------TSIETLDLSDNNLP- 224
           + L L S  L    P            ++ + NLS          +S+  LDL  NNL  
Sbjct: 196 EFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSG 255

Query: 225 ----------------------SSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVS 262
                                 S  + P +F+L +N++ LD + NSL G IPE    M S
Sbjct: 256 PIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSL-QNLISLDFSDNSLSGEIPELVAQMQS 314

Query: 263 LKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
           L+ LHL  N L G IP+   ++  L  L L  N+ SG
Sbjct: 315 LEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSG 351

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
224105895	963	predicted protein [Populus trichocarpa]	0.959	0.342	0.483	6e-69
225464712	1021	PREDICTED: receptor-like protein 12-like	0.906	0.305	0.457	1e-68
359490572	975	PREDICTED: probable LRR receptor-like se	0.898	0.316	0.441	5e-65
224125666	938	predicted protein [Populus trichocarpa]	0.895	0.328	0.482	3e-63
147855809	1107	hypothetical protein VITISV_029207 [Viti	0.898	0.279	0.455	1e-61
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.875	0.293	0.493	3e-60
224105891	1036	predicted protein [Populus trichocarpa]	0.921	0.305	0.444	1e-59
224116866	994	predicted protein [Populus trichocarpa]	0.921	0.318	0.444	1e-59
302143736	510	unnamed protein product [Vitis vinifera]	0.764	0.515	0.469	2e-58
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.837	0.296	0.433	4e-58

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 218/341 (63%), Gaps = 11/341 (3%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
           CI+ ER+ALL FK+ ++D+ GVLSSWG + +KRDCCKWRGV C N TGHV  LNL  S  
Sbjct: 32  CIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTSLNLHSSPL 91

Query: 65  ENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
                  L G +S +LL+L  L +LDLS N+   S + +FIGSLS LRYLNLS     + 
Sbjct: 92  YEHHFTPLTGKVSNSLLELQHLNYLDLSLNNLDES-IMDFIGSLSSLRYLNLSYNLFTVT 150

Query: 125 VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 184
           +P   + LS L  L L  S   S+ +L WLSHLSSL HLDLS  +L+K +DW QVV  L 
Sbjct: 151 IPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVNDWLQVVTNLP 210

Query: 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
            LK L L  C+L  I PS +   N S  +  L LS+NNL SS++YPWL+NLS ++  LDL
Sbjct: 211 RLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNL-SSAIYPWLYNLSNSLADLDL 269

Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
           + N L+G +P+ F+ M +L +L L+ N+LEGGIP+  G MCSL+ L L HN L+GELS++
Sbjct: 270 SGNQLQGLVPDGFRKMSALTNLVLSRNQLEGGIPRSLGEMCSLHTLDLCHNNLTGELSDL 329

Query: 305 IQNLSGGCTMNSLEGVLEIIKSHRAGR-------KSMRPLD 338
            +NL G  T +SLE +L + ++   G         S+R LD
Sbjct: 330 TRNLYGR-TESSLE-ILRLCQNQLRGSLTDIARFSSLRELD 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/363 (45%), Positives = 212/363 (58%), Gaps = 51/363 (14%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRR-SD 63
           C+++ER+ALL FKQ +VD +G+LSSWG + D+RDCCKWRGV+CSN+T HV +L+L     
Sbjct: 52  CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGVQCSNRTSHVIMLDLHALPT 111

Query: 64  DENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL 123
           D   + + L+G IS +LL+L  L HLDLS N F GS VPEFIG  S+LRYLNLS      
Sbjct: 112 DTVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEFIGLFSKLRYLNLSEARLAG 171

Query: 124 KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL 183
            +P     LS L +L L  +   S  +LEWLS LSSLRHLDLS +NL K+  W  V+ +L
Sbjct: 172 MIPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLDLSGLNLDKAIYWEHVINRL 231

Query: 184 RSLKTLVLRSCALPP-INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVL 242
            SL  L+L   ALP  I PS + + N S S+  LDLS N L SSSVYPWLFNLS +++ L
Sbjct: 232 PSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFL-SSSVYPWLFNLSSSLVHL 290

Query: 243 DLAFNS-----------------------------------------------LRGSIPE 255
           DL+ N                                                L GSIP+
Sbjct: 291 DLSINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHLDLSVNHLHGSIPD 350

Query: 256 AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMN 315
            F HM SL  L L+ N+LEGGIPK F N+CSL  + L  N L+ +L E +QN S  C+ +
Sbjct: 351 TFGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNSLTAQLPEFVQN-SLSCSKD 409

Query: 316 SLE 318
           +LE
Sbjct: 410 TLE 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 154/349 (44%), Positives = 217/349 (62%), Gaps = 40/349 (11%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
           CI+ ER+ALL FK+ + D +G+LSSW  + +KRDCCKWRGV+CS++TGH+  L+L   + 
Sbjct: 36  CIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHITSLDLSAYEY 95

Query: 65  ENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
           ++   + L+G ISP+LL+L  L HLDLS N F G  +PEFIGSL+++RYL+LS  ++ L 
Sbjct: 96  KD-EFRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLDLS--STYLA 152

Query: 125 VPRPFQY--LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 182
            P P Q   LS L +L L  ++  S  +L+WLS LSSL HL L+++NL+K+  W   + K
Sbjct: 153 GPLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIRWADAINK 212

Query: 183 LRSLKTLVLRSCALP-PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241
           L SL  L+L+SC LP PI PS       S S+  LDLS N L S+S+YPWLFN + +++ 
Sbjct: 213 LPSLIDLLLKSCDLPSPITPSLSL-VTSSMSLAVLDLSCNQL-STSIYPWLFNFNSSLVH 270

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKS----------------------LHLTDNELEGGIPK 279
           LDL++N L+ S P+AF +MVSL+                       L L++N+L+G IP 
Sbjct: 271 LDLSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSSSLVFLDLSNNQLQGSIPD 330

Query: 280 FFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHR 328
            FGNM SL  + L  N+L GE+ +   NL            L+I+K HR
Sbjct: 331 TFGNMTSLRTVNLTRNQLEGEIPKSFNNLCN----------LQILKLHR 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 154/319 (48%), Positives = 203/319 (63%), Gaps = 11/319 (3%)

Query: 3   MRCIDEEREALLTFKQSMVDKYGVLSSWG-RDNDKRDCCKWRGVRCSNKTGHVKVLNLRR 61
            RCI+ ER+ALL+FKQ +    G+LSSWG  + +K DCCKW GV C+N+TG + +L+L  
Sbjct: 32  FRCIERERQALLSFKQELEYPSGLLSSWGSEEGEKSDCCKWVGVGCNNRTGRITMLDLH- 90

Query: 62  SDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTS 121
                  G  + G I+ +LL+L  L +LDLS+N F G+P P F+GSL +LRYL+LS    
Sbjct: 91  -------GLAVGGNITDSLLELQHLNYLDLSDNSFYGNPFPSFVGSLRKLRYLSLSNNGL 143

Query: 122 LLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVA 181
           + ++      LS L  L L  +   S  SL+WLS LS L HL L+  +LT++SDW QVV 
Sbjct: 144 IGRLSYQLGNLSSLQSLDLSYNFDVSFESLDWLSRLSFLEHLHLTGNHLTQASDWIQVVN 203

Query: 182 KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241
           KL  LK L L  C+L  I P  +   N S S+  LDLS N+L SSS+ PWL N S +++ 
Sbjct: 204 KLPRLKDLQLSDCSLLSIVPPALSFVNSSRSLAILDLSFNHL-SSSIVPWLSNSSDSLVD 262

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301
           LDL+ N L+GSIP+AF  M SL +LHL DN+LEGGIP+ FG MCSL  L L  N LSG L
Sbjct: 263 LDLSANQLQGSIPDAFGKMTSLTNLHLADNQLEGGIPRSFGGMCSLRELDLSPNNLSGPL 322

Query: 302 SEMIQNLSGGCTMNSLEGV 320
              I+N+  GC  NSL+ +
Sbjct: 323 PRSIRNMH-GCVENSLKSL 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855809|emb|CAN79130.1| hypothetical protein VITISV_029207 [Vitis vinifera]

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 149/327 (45%), Positives = 200/327 (61%), Gaps = 18/327 (5%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSD- 63
           CI+ ER+ALL FK+ +VD YG+LS WG + DKRDCC+WRGVRC+N++GHV +L L     
Sbjct: 33  CIEGERQALLKFKRGLVDDYGLLSLWGDEQDKRDCCRWRGVRCNNRSGHVIMLRLPAPPI 92

Query: 64  DENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL 123
           DE    + L+G ISP+LL+L  L HLDLS N F G  +P F+GSLS+++YLNLS      
Sbjct: 93  DEYGNYQSLRGEISPSLLELEHLNHLDLSYNDFEGKQIPSFLGSLSKMQYLNLSYAKFAK 152

Query: 124 KVPRPFQYLSGLV-------YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDW 176
            +P     LS L+       Y  L +      G+LEWLSHLSSLR LDLS ++L  +  W
Sbjct: 153 TIPTQLGNLSNLLSLDLSGSYYELNS------GNLEWLSHLSSLRFLDLSLVDLGAAIHW 206

Query: 177 FQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 236
            Q + KL SL  L L   +LPP     ++H N S  +  LDLS+N L +SS+YPW FN S
Sbjct: 207 SQAINKLPSLVXLNLYGXSLPPFTTGSLFHANSSAPLVFLDLSNNYLINSSIYPWXFNFS 266

Query: 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK 296
             ++ LDL+ N L GSIP+AF +M+SL  L+L D   EG IP  FG M +L  L +  + 
Sbjct: 267 TTLVHLDLSSNDLNGSIPDAFGNMISLAYLNLRDCAFEGEIPFXFGGMSALEYLDISGHG 326

Query: 297 LSGELSEMIQNLSG----GCTMNSLEG 319
           L GE+ +   N++       + N L+G
Sbjct: 327 LHGEIPDTFGNMTSLAYLALSSNQLQG 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 154/312 (49%), Positives = 204/312 (65%), Gaps = 11/312 (3%)

Query: 2   VMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRR 61
           V  CI+ ER+ALL F++ +VD+YG+LSSWG DN  RDCC+WRGV+CSN++GH+ +L+L  
Sbjct: 27  VTGCIERERQALLHFRRGLVDRYGLLSSWGDDN--RDCCQWRGVQCSNQSGHIIMLHLPA 84

Query: 62  SDDENARGKV----LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS 117
             +E+    V    L+G ISP+LL+L  L HLDLS N F G  +P F+GSLSR++YLNLS
Sbjct: 85  PPNEDYSQDVIYQSLRGEISPSLLELDHLTHLDLSYNDFEGRHIPPFLGSLSRMQYLNLS 144

Query: 118 CGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF 177
                  VP     LS L+ L L ++ L + G+LEWLS LSSLRHLDLS +NL+++  W 
Sbjct: 145 HANFAQTVPTQLGNLSNLLSLDLSDNYLLNSGNLEWLSRLSSLRHLDLSSVNLSEAIHWS 204

Query: 178 QVVAKLRSLKTLVLRSCALPPINPSF---IWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 234
           Q + KL SL  L L+ C LPPI P     + H N S  +  LDLS N L +SS+YPWL N
Sbjct: 205 QAINKLPSLIHLDLQHCYLPPIPPLTIPSLSHGNSSVPLVFLDLSGNYL-TSSIYPWLLN 263

Query: 235 LSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP 293
            S  +L LDL+FN L GSIPE AF +M SL+ L L  +EL+  IP   G+M SL  L + 
Sbjct: 264 FSTTLLHLDLSFNGLNGSIPEYAFGNMSSLEYLDLHSSELDDEIPDTIGDMGSLAYLDIS 323

Query: 294 HNKLSGELSEMI 305
            N+L G + + +
Sbjct: 324 ENQLWGSIPDTV 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105891|ref|XP_002333752.1| predicted protein [Populus trichocarpa] gi|222838400|gb|EEE76765.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/326 (44%), Positives = 210/326 (64%), Gaps = 9/326 (2%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
           CI+ ER+ALL FK+ ++D +G+LS+WG + +KRDCCKWRGV CSN+TGHV  L+L R ++
Sbjct: 40  CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHR-EN 98

Query: 65  ENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
            N     L G IS +LL+L  L +L+L+ + FGGS  P FIGSL +LRYL+LS       
Sbjct: 99  YNGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGT 158

Query: 125 VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 184
           +   F  LS L YL L      +  SL++LS+  SL+HLDL   +L+++ DW QV+ +L 
Sbjct: 159 LSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLP 218

Query: 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
            L  L+L SC+L  I    +   N S S+  +D S N+L SSS++ WL N   +++ LDL
Sbjct: 219 RLHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDL-SSSIFHWLANFGNSLIDLDL 277

Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
           + N+L+GSIP+ F +M SL++L L+ N+L+G +   FG MCSLN+L +  N L GELS++
Sbjct: 278 SHNNLQGSIPDVFTNMTSLRTLDLSSNQLQGDLSS-FGQMCSLNKLCISENNLIGELSQL 336

Query: 305 IQNLSGGCTMNSLEGVLEIIKSHRAG 330
                 GC  NSLE +L++ ++   G
Sbjct: 337 F-----GCVENSLE-ILQLDRNQLYG 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/326 (44%), Positives = 210/326 (64%), Gaps = 9/326 (2%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
           CI+ ER+ALL FK+ ++D +G+LS+WG + +KRDCCKWRGV CSN+TGHV  L+L R ++
Sbjct: 40  CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHR-EN 98

Query: 65  ENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
            N     L G IS +LL+L  L +L+L+ + FGGS  P FIGSL +LRYL+LS       
Sbjct: 99  YNGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGT 158

Query: 125 VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 184
           +   F  LS L YL L      +  SL++LS+  SL+HLDL   +L+++ DW QV+ +L 
Sbjct: 159 LSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLP 218

Query: 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
            L  L+L SC+L  I    +   N S S+  +D S N+L SSS++ WL N   +++ LDL
Sbjct: 219 RLHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDL-SSSIFHWLANFGNSLIDLDL 277

Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
           + N+L+GSIP+ F +M SL++L L+ N+L+G +   FG MCSLN+L +  N L GELS++
Sbjct: 278 SHNNLQGSIPDVFTNMTSLRTLDLSSNQLQGDLSS-FGQMCSLNKLCISENNLIGELSQL 336

Query: 305 IQNLSGGCTMNSLEGVLEIIKSHRAG 330
                 GC  NSLE +L++ ++   G
Sbjct: 337 F-----GCVENSLE-ILQLDRNQLYG 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143736|emb|CBI22597.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/294 (46%), Positives = 176/294 (59%), Gaps = 31/294 (10%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
           C + ER+ALL FKQ +VD +G+LSSWG   DKRDCCKWRGV C N+TGHV VL+     D
Sbjct: 32  CRERERQALLHFKQGVVDDFGMLSSWGNGEDKRDCCKWRGVECDNQTGHVIVLDPHAPFD 91

Query: 65  ENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
                  L G I P+L +L  L+HL+LS N F G  +P  +G+LS L+ L+L        
Sbjct: 92  -----GYLGGKIGPSLAELQHLKHLNLSWNDFEGI-LPTQLGNLSNLQSLDLG------- 138

Query: 125 VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 184
                            +    + G+LEWLSHL  L HLDLS ++L+K+  W Q + K+ 
Sbjct: 139 ----------------HSFGFMTCGNLEWLSHLPLLTHLDLSGVHLSKAIHWPQAINKMP 182

Query: 185 SLKTLVLRSCALPPINPSF-IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLD 243
           SL  L L    LPPI P+  I H N STS+  LDLS N L +SS+YPWLFN S +++ LD
Sbjct: 183 SLTELYLSYTQLPPIIPTISISHINSSTSLAVLDLSVNGL-TSSIYPWLFNFSSSLVHLD 241

Query: 244 LAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
           L+ N L GSIP+AF +M +L  L L  NEL G IP  FGNM SL  L+L  N+L
Sbjct: 242 LSMNDLNGSIPDAFGNMTTLAYLGLYGNELRGSIPDAFGNMTSLAYLYLSSNQL 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 144/332 (43%), Positives = 191/332 (57%), Gaps = 44/332 (13%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
           C + ER+ALL FKQ +VD  GVLSSWG   DKRDCCKWRGV+C+N+TGHV  L+L     
Sbjct: 35  CRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVIRLDLH---- 90

Query: 65  ENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSP-----VPEFIGSLSRLRYLNLSCG 119
                + L G I P+L +L  L+HL+LS+N F   P     +P  +G+LS L+ L+L   
Sbjct: 91  ----AQSLGGKIGPSLAELQHLKHLNLSSNDFEAFPNFTGILPTQLGNLSNLQSLDLG-- 144

Query: 120 TSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQV 179
                                 N    + G+L+WL HL  L HLDLS++NL+K+  W Q 
Sbjct: 145 ---------------------YNYGDMTCGNLDWLCHLPFLTHLDLSWVNLSKAIHWPQA 183

Query: 180 VAKLRSLKTLVLRSCALPPINPSF-IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 238
           + K+ SL  L L    LP I P+  I H N STS+  L L  N L +SS+YPWLFN S +
Sbjct: 184 INKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGL-TSSIYPWLFNFSSS 242

Query: 239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           ++ LDL++N L GS P+AF +M +L  L L+ NEL G IP  FGNM +L  L L  NKL 
Sbjct: 243 LVHLDLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKLR 302

Query: 299 GELSEMIQNLSG----GCTMNSLEGVLEIIKS 326
           G + +   N++       ++N LEG  EI KS
Sbjct: 303 GSIPDAFGNMTSLAYLDLSLNELEG--EIPKS 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.921	0.350	0.304	2.1e-27
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.363	0.123	0.384	5.1e-18
TAIR|locus:2091260	372	DRT100 "DNA-DAMAGE REPAIR/TOLE	0.401	0.370	0.293	1.6e-16
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.840	0.283	0.273	3e-16
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.375	0.134	0.358	6e-16
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.392	0.138	0.337	2.6e-15
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.264	0.107	0.406	5.2e-15
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.369	0.125	0.326	6.9e-15
TAIR|locus:2197586	478	AT1G33600 [Arabidopsis thalian	0.380	0.274	0.321	1.1e-14
TAIR|locus:2066306	480	AT2G26380 [Arabidopsis thalian	0.337	0.241	0.328	2.3e-14

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.1e-27, P = 2.1e-27
 Identities = 104/342 (30%), Positives = 159/342 (46%)

Query:     4 RCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSD 63
             +CI  ER+ALLTF+ ++ D    L SW       DCC W GV C  +T HV  ++LR   
Sbjct:    32 KCISTERQALLTFRAALTDLSSRLFSWSGP----DCCNWPGVLCDARTSHVVKIDLRNPS 87

Query:    64 -----DENARGKVLKGTISPAXXXXXXXXXXXXSNNHFGGSPVPEFIGSLSRLRYLNLSC 118
                  DE  RG  L+G I P+            S+N F    +PEFIG +  LRYLNLS 
Sbjct:    88 QDVRSDEYKRGS-LRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSS 146

Query:   119 GTSLLKVPRPFQYLSGLVYLRL--ENS------NLFXXXXXXXXXXXXXXXXXXXXYINL 170
              +   ++P     LS L  L L  E+       +L                     Y+NL
Sbjct:   147 SSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNL 206

Query:   171 TKSSD-WFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETXXXXXXXXXXXXVY 229
             + + + W Q  +++ +LK L L +  L  + P+     +L   +E             + 
Sbjct:   207 SGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKL-LEVLDLSENSLNSP-IP 264

Query:   230 PWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDN-ELEGGIPKFFGNMCSLN 288
              WLF L+ N+  L L ++ L+GSIP  F+++  L++L L++N  L+G IP   G++  L 
Sbjct:   265 NWLFGLT-NLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLK 323

Query:   289 RLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKSHRAG 330
              L L  N+L+G++   +   S     NSL   L++  +  AG
Sbjct:   324 FLDLSANELNGQIHGFLDAFSRN-KGNSLV-FLDLSSNKLAG 363

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
 Identities = 55/143 (38%), Positives = 71/143 (49%)

Query:     7 DE-EREALLTFK-QSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
             DE +R+ALL FK Q   DK  VLSSW   N     C W+GV C  K   V  L L R   
Sbjct:    22 DETDRQALLQFKSQVSEDKRVVLSSW---NHSFPLCNWKGVTCGRKNKRVTHLELGRLQ- 77

Query:    65 ENARGKVLKGTISPAXXXXXXXXXXXXSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
                    L G ISP+              N FGG+ +P+ +G LSRL YL++  G + L+
Sbjct:    78 -------LGGVISPSIGNLSFLVSLDLYENFFGGT-IPQEVGQLSRLEYLDM--GINYLR 127

Query:   125 VPRPFQ-Y-LSGLVYLRLENSNL 145
              P P   Y  S L+ LRL+++ L
Sbjct:   128 GPIPLGLYNCSRLLNLRLDSNRL 150

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2091260 DRT100 "DNA-DAMAGE REPAIR/TOLERATION 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 44/150 (29%), Positives = 71/150 (47%)

Query:     2 VMRCID-EEREALLTFKQSMVD-KYGVLSSWGRDNDKRDCCK-WRGVRCSNKTGHVKVLN 58
             V+RC   +++ AL  FK S+ +   G+ ++W   ++  DCCK W G+ C   +G V  ++
Sbjct:    23 VVRCCSPKDQTALNAFKSSLSEPNLGIFNTW---SENTDCCKEWYGISCDPDSGRVTDIS 79

Query:    59 LR-RSDD----ENARGKVLKGTISPAXXXXXXXXXXXXSNNHFGGSPVPEFIGSLSRLRY 113
             LR  S+D    +  R   + G+I PA            ++       +P  I SL+ LR 
Sbjct:    80 LRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRI 139

Query:   114 LNLSCGTSLLKVPRPFQYLSGLVYLRL-EN 142
             L+L+      ++P     LS L  L L EN
Sbjct:   140 LDLAGNKITGEIPAEIGKLSKLAVLNLAEN 169

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0009650 "UV protection" evidence=IGI

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009411 "response to UV" evidence=IGI

GO:0009507 "chloroplast" evidence=ISS

GO:0042493 "response to drug" evidence=IGI

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 86/314 (27%), Positives = 142/314 (45%)

Query:     5 CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
             C  ++++ALL FK    +++G++ S    N K DCC W G+ C  K+G+V  L+L     
Sbjct:    74 CHSDQKDALLDFK----NEFGMVDSKSWVN-KSDCCSWDGITCDAKSGNVIGLDL---SS 125

Query:    65 ENARGKVLKGTISPAXXXXXXXXXXXXSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
                 G+ LK   S              +NN+F  SP+P     L+ L  L+LS  +   +
Sbjct:   126 IFLYGQ-LKSNSS--LFKLRHLRDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLSGQ 182

Query:   125 VPRPFQYLSGLVYLRLENSNLFXXXXXXXXXXXXXXXXXXXXYI-NLTK--------SSD 175
             +P     L+ LV L L +S+ F                     + NL +        SS+
Sbjct:   183 IPINLLQLTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKISSE 242

Query:   176 WFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETXXXXXXXXXXXXVYPWLFNL 235
               +  + +RSL++L L  C L    PS I    L  ++++            + P +F+ 
Sbjct:   243 IPEEFSNIRSLRSLNLNGCNLFGEFPSSIL---LIPNLQSIDLGNNPNLRGNL-P-VFHE 297

Query:   236 SRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
             + ++L L + + S  G+IP++   + +L SL L+ +   G IP   GN+  L+ L L  N
Sbjct:   298 NNSLLKLTILYTSFSGAIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSN 357

Query:   296 KLSGELSEMIQNLS 309
              L GE+   I NL+
Sbjct:   358 NLIGEIPSSIGNLN 371

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
 Identities = 52/145 (35%), Positives = 69/145 (47%)

Query:     5 CID-EEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSD 63
             C+   E E LL+FK S+ D    LSSW   +   D C W GV C+N +   +V++L  S 
Sbjct:    26 CLHANELELLLSFKSSIQDPLKHLSSWSYSSTN-DVCLWSGVVCNNIS---RVVSLDLSG 81

Query:    64 DENARGKVLKGTISPAXXXXXXXXXXXXSNNHFGGSPVPE--FIGSLSRLRYLNLSCGTS 121
              +N  G++L    + A            SNN+  G P+P   F  S   LRYLNLS    
Sbjct:    82 -KNMSGQIL----TAATFRLPFLQTINLSNNNLSG-PIPHDIFTTSSPSLRYLNLSNNNF 135

Query:   122 LLKVPRPFQYLSGLVYLRLENSNLF 146
                +PR F  L  L  L L N N+F
Sbjct:   136 SGSIPRGF--LPNLYTLDLSN-NMF 157

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 49/145 (33%), Positives = 60/145 (41%)

Query:     1 MVMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLR 60
             +V     EE   LL  K+S  D   VL  W   +   D C WRGV C N T +V  LNL 
Sbjct:    18 LVATVTSEEGATLLEIKKSFKDVNNVLYDW-TTSPSSDYCVWRGVSCENVTFNVVALNL- 75

Query:    61 RSDDENARGKVLKGTISPAXXXXXXXXXXXXSNNHFGGSPVPEFIGSLSRLRYLNLSCGT 120
                D N     L G ISPA              N   G  +P+ IG  S L+ L+LS   
Sbjct:    76 --SDLN-----LDGEISPAIGDLKSLLSIDLRGNRLSGQ-IPDEIGDCSSLQNLDLSFNE 127

Query:   121 SLLKVPRPFQYLSGLVYLRLENSNL 145
                 +P     L  L  L L+N+ L
Sbjct:   128 LSGDIPFSISKLKQLEQLILKNNQL 152

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
 Identities = 39/96 (40%), Positives = 52/96 (54%)

Query:   232 LFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291
             L NLSR ++ L+L  N L G IP++   +  L++L L  N L G IP   GN+ +L  L 
Sbjct:   178 LGNLSR-LVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLV 236

Query:   292 LPHNKLSGELSEMIQNLSGGCTM----NSLEGVLEI 323
             L HN+L GE+   I NL     M    NSL G + I
Sbjct:   237 LTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPI 272

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 46/141 (32%), Positives = 68/141 (48%)

Query:     7 DE-EREALLTFKQSMVD-KYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
             DE +R+ALL FK  + + K  VLSSW   N+    C W+ V C  K  H +V +L     
Sbjct:    22 DETDRQALLEFKSQVSEGKRDVLSSW---NNSFPLCNWKWVTCGRK--HKRVTHL----- 71

Query:    65 ENARGKVLKGTISPAXXXXXXXXXXXXSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
              N  G  L G +SP+            S+N FGG  +P  +G+L RL +L ++  +    
Sbjct:    72 -NLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGI-IPREVGNLFRLEHLYMAFNSLEGG 129

Query:   125 VPRPFQYLSGLVYLRLENSNL 145
             +P      S L+ L L ++ L
Sbjct:   130 IPATLSNCSRLLNLDLYSNPL 150

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2197586 AT1G33600 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 47/146 (32%), Positives = 64/146 (43%)

Query:     5 CIDEEREALLTFKQSMV-DKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSD 63
             C  ++   LL FK  +  D  G+LSSW +  D   CC W+GV C   T  V  L +    
Sbjct:    28 CHPDDEAGLLAFKSGITQDPTGILSSWKKGTD---CCSWKGVGCL--TNRVTGLTINGQS 82

Query:    64 DENARGKVLKGTISPAXXXXXXXXXXXXSN-NHFGGSPVPEFIGSLSRLRYLNLSCGTSL 122
             D    G  L GTISP+            +N  +  GS  P+F+  L  ++ +  +   S 
Sbjct:    83 D--VTGSFLSGTISPSLAKLQHLVGIYFTNLRNITGS-FPQFLFQLPNVKQVYFT--NSR 137

Query:   123 LKVPRPFQY--LSGLVYLRLENSNLF 146
             L  P P     LS L  L L+  NLF
Sbjct:   138 LSGPLPANIGALSELGELSLDG-NLF 162

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2066306 AT2G26380 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 41/125 (32%), Positives = 54/125 (43%)

Query:     5 CIDEEREALLTFKQSMV-DKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSD 63
             C  ++   LL FK  +  D  G+LS+W +  D   CC W GV C N    V VL +R   
Sbjct:    29 CHPDDEAGLLAFKSGITKDPSGILSTWKKGTD---CCSWNGVSCPNGN-RVVVLTIRIES 84

Query:    64 DENARGKVLKGTISPAXXXXXXXXXXXXSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL 123
             D+   G  L GTISP+             N      P P F+  L  L+Y+ L    + L
Sbjct:    85 DD--AGIFLSGTISPSLAKLQHLEGVVFINLKNITGPFPPFLFRLPHLKYVYLE--NTRL 140

Query:   124 KVPRP 128
               P P
Sbjct:   141 SGPLP 145

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-11
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (304), Expect = 3e-30
 Identities = 127/394 (32%), Positives = 173/394 (43%), Gaps = 98/394 (24%)

Query: 8   EEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENA 67
           EE E LL+FK S+ D    LS+W   N   D C W+G+ C+N +  V  ++L        
Sbjct: 29  EELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNNSS-RVVSIDLS------- 77

Query: 68  RGKVLKGTISPALLKL-------------------------HDLRHLDLSNNHFGGS--- 99
            GK + G IS A+ +L                           LR+L+LSNN+F GS   
Sbjct: 78  -GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136

Query: 100 ------------------PVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLE 141
                              +P  IGS S L+ L+L     + K+P     L+ L +L L 
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196

Query: 142 NSNLF-----SLG---SLEW---------------LSHLSSLRHLDLSYINLTKSSDWFQ 178
           ++ L       LG   SL+W               +  L+SL HLDL Y NLT       
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP--S 254

Query: 179 VVAKLRSLKTLVLRSCALP-PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR 237
            +  L++L+ L L    L  PI PS    F+L   I +LDLSDN+L  S   P L    +
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSI---FSLQKLI-SLDLSDNSL--SGEIPELVIQLQ 308

Query: 238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
           N+ +L L  N+  G IP A   +  L+ L L  N+  G IPK  G   +L  L L  N L
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 298 SGELSEMIQNLSGGCTM-----NSLEGVLEIIKS 326
           +GE+ E + + SG         NSLEG  EI KS
Sbjct: 369 TGEIPEGLCS-SGNLFKLILFSNSLEG--EIPKS 399

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 76/255 (29%), Positives = 116/255 (45%), Gaps = 32/255 (12%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131
           L G I P++  L  L  LDLS+N   G  +PE +  L  L  L+L       K+P     
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLT--------KSSDWFQVV--- 180
           L  L  L+L  SN FS    + L   ++L  LDLS  NLT         S + F+++   
Sbjct: 331 LPRLQVLQLW-SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389

Query: 181 -----------AKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSS-SV 228
                         RSL+ + L+  +     PS      L   +  LD+S+NNL    + 
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL---VYFLDISNNNLQGRINS 446

Query: 229 YPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLN 288
             W      ++ +L LA N   G +P++F     L++L L+ N+  G +P+  G++  L 
Sbjct: 447 RKWDMP---SLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELM 502

Query: 289 RLFLPHNKLSGELSE 303
           +L L  NKLSGE+ +
Sbjct: 503 QLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 67/230 (29%), Positives = 96/230 (41%), Gaps = 34/230 (14%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131
           L+G I  +L     LR + L +N F G    EF   L  + +L++S      ++      
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWD 450

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
           +  L  L L  +  F  G L        L +LDLS    + +     V  KL SL  L+ 
Sbjct: 451 MPSLQMLSLARNKFF--GGLPDSFGSKRLENLDLSRNQFSGA-----VPRKLGSLSELM- 502

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
                                   L LS+N L  S   P   +  + ++ LDL+ N L G
Sbjct: 503 -----------------------QLKLSENKL--SGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301
            IP +F  M  L  L L+ N+L G IPK  GN+ SL ++ + HN L G L
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 6  IDEEREALLTFKQSMVDKY-GVLSSWGRDNDKRDCCKWRGVRCS 48
          ++++R+ALL FK S+     G LSSW  +    D C W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSW--NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301
           ++L+ NS+RG+IP +   + SL+ L L+ N   G IP+  G + SL  L L  N LSG +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301
           L L    LRG IP     +  L+S++L+ N + G IP   G++ SL  L L +N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 302 SE--------MIQNLSGGCTMNSLEG 319
            E         I NL+G    NSL G
Sbjct: 483 PESLGQLTSLRILNLNG----NSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE 272
           +++++LS N++      P       ++ VLDL++NS  GSIPE+   + SL+ L+L  N 
Sbjct: 444 LQSINLSGNSI--RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 273 LEGGIPKFFG 282
           L G +P   G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 26/218 (11%)

Query: 79  ALLKLHDLRHLDLSNNHFG--GSPVPEFIGSLSRLRYLNLS-----------CGTSLLKV 125
            L K   L+ LDLS+N  G  G  V E +   S L+ L L+               L  +
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL 135

Query: 126 PRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKL 183
           P   + L  L   RLE ++  +L     L     L+ L+L+   +  +      + +   
Sbjct: 136 PPALEKL-VLGRNRLEGASCEALAKA--LRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 184 RSLKTLVLRSCALPPINPSFIWH-FNLSTSIETLDLSDNNL---PSSSVYPWLFNLSRNI 239
            +L+ L L +  L     S +        S+E L+L DNNL    ++++   L + + ++
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 240 LVLDLAFNSLR----GSIPEAFQHMVSLKSLHLTDNEL 273
           L L L+ N +       + E      SL  L L  N+ 
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDN 271
           ++++LDLS+N L  + +    F    N+ VLDL+ N+L    PEAF  + SL+SL L+ N
Sbjct: 1   NLKSLDLSNNRL--TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 272 EL 273
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 47/148 (31%), Positives = 65/148 (43%), Gaps = 39/148 (26%)

Query: 7   DEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCK----WRGVRCS--NKTGH--VKVLN 58
            EE  AL T K S+    G+   +G + D   C      W G  C   +  G   +  L 
Sbjct: 371 LEEVSALQTLKSSL----GLPLRFGWNGDP--CVPQQHPWSGADCQFDSTKGKWFIDGLG 424

Query: 59  LRRSDDENARGKV-------------------LKGTISPALLKLHDLRHLDLSNNHFGGS 99
           L   D++  RG +                   ++G I P+L  +  L  LDLS N F GS
Sbjct: 425 L---DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 100 PVPEFIGSLSRLRYLNLSCGTSLL-KVP 126
            +PE +G L+ LR LNL+ G SL  +VP
Sbjct: 482 -IPESLGQLTSLRILNLN-GNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 241 VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
            LDL+ N L      AF+ + +LK L L+ N L    P+ F  + SL  L L  N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 19/170 (11%)

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
           L+ L  L L+N+N+  +  L  L   S+L+ LDLS   +         +  L +LK L L
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLK-SNLKELDLSDNKIESLPSP---LRNLPNLKNLDL 170

Query: 192 ---RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS 248
                  LP +        +  +++  LDLS N +   S  P    L   +  LDL+ NS
Sbjct: 171 SFNDLSDLPKLL-------SNLSNLNNLDLSGNKI---SDLPPEIELLSALEELDLSNNS 220

Query: 249 LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           +   +  +  ++ +L  L L++N+LE  +P+  GN+ +L  L L +N++S
Sbjct: 221 II-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLR 192
            L  L L N+ L  +        L +L+ LDLS  NLT  S + F     L SL++L L 
Sbjct: 1   NLKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLS 56

Query: 193 SCAL 196
              L
Sbjct: 57  GNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.67
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
PLN03150	623	hypothetical protein; Provisional	99.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.5
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.04
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.04
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.99
PLN03150	623	hypothetical protein; Provisional	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.67
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.65
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG4341	483	consensus F-box protein containing LRR [General fu	98.56
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.5
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.88
KOG4341	483	consensus F-box protein containing LRR [General fu	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.61
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.2
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.51
KOG4308	478	consensus LRR-containing protein [Function unknown	95.37
KOG4308	478	consensus LRR-containing protein [Function unknown	95.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.13
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.84
smart00370	26	LRR Leucine-rich repeats, outliers.	88.84
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.33

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.1e-34  Score=289.17  Aligned_cols=312  Identities=31%  Similarity=0.419  Sum_probs=184.7

Q ss_pred             CHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCC
Q 019237            6 IDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHD   85 (344)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~   85 (344)
                      .++|+.||++|++.+.+|..+...|+   ...++|.|.|++|.. .++++.|+++++        .+.+.++..+..+++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~--------~i~~~~~~~~~~l~~   94 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGK--------NISGKISSAIFRLPY   94 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCC--------CccccCChHHhCCCC
Confidence            67899999999999988888889997   577899999999963 568999999998        667777778888888


Q ss_pred             CCEEeCCCCCCCCCCcccccc-CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           86 LRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      |+.|++++|.+.+. +|..+. .+.+|++|++++|.+.+.+|.  ..+++|++|++++|.+... .+..+..+++|++|+
T Consensus        95 L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~  170 (968)
T PLN00113         95 IQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence            88888888877654 555433 667777777776666655553  2355566666666655421 224455555555555


Q ss_pred             ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch---------------------hhccccCCcccEEEcCCCCC
Q 019237          165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF---------------------IWHFNLSTSIETLDLSDNNL  223 (344)
Q Consensus       165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------------------~~~~~~~~~L~~L~l~~n~l  223 (344)
                      +++|.+....+  ..+..+++|++|++++|.+.+..+..                     ...+..+++|++|++++|.+
T Consensus       171 L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        171 LGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             CccCcccccCC--hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            55555443321  24445555555555555544332210                     01123334445555554444


Q ss_pred             CCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccch
Q 019237          224 PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSE  303 (344)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  303 (344)
                      .+ .++.. ...+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+++.+|.
T Consensus       249 ~~-~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        249 TG-PIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             cc-ccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            22 22222 22233455555555555544555555555555555555555555555555555555555555555555555


Q ss_pred             HHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          304 MIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       304 ~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      .+..+++    ++++|.+.+.+|...      ..+++|+.|+++
T Consensus       327 ~~~~l~~L~~L~L~~n~l~~~~p~~l------~~~~~L~~L~Ls  364 (968)
T PLN00113        327 ALTSLPRLQVLQLWSNKFSGEIPKNL------GKHNNLTVLDLS  364 (968)
T ss_pred             hHhcCCCCCEEECcCCCCcCcCChHH------hCCCCCcEEECC
Confidence            5554444    555555555554322      245666666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1.8e-27  Score=241.45  Aligned_cols=243  Identities=31%  Similarity=0.417  Sum_probs=162.1

Q ss_pred             ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc
Q 019237           71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS  150 (344)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~  150 (344)
                      .+.+.+|..++++++|++|++++|.+.+. +|..++++++|++|++++|.+.+.+|..+..+.+|++|++++|.+.. ..
T Consensus       151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~  228 (968)
T PLN00113        151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EI  228 (968)
T ss_pred             cccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-cC
Confidence            66677777788888888888888877665 67777778888888888777777777777777788888888777763 22


Q ss_pred             hhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcc
Q 019237          151 LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYP  230 (344)
Q Consensus       151 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  230 (344)
                      +..+..+++|++|++++|.+....+  ..+..+++|+.|++++|.+.+..+.   .+..+++|++|++++|.+.+ .++ 
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~-~~p-  301 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIP--SSLGNLKNLQYLFLYQNKLSGPIPP---SIFSLQKLISLDLSDNSLSG-EIP-  301 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccC--hhHhCCCCCCEEECcCCeeeccCch---hHhhccCcCEEECcCCeecc-CCC-
Confidence            3556777777777777777665432  4566777777777777776654332   23344667777777776643 333 


Q ss_pred             hhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          231 WLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       231 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      .....+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+..
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence            33334456777777777766666666666667777777777666666666666666777777666666666666555433


Q ss_pred             ----cccccccccccc
Q 019237          311 ----GCTMNSLEGVLE  322 (344)
Q Consensus       311 ----~l~~n~l~~~~~  322 (344)
                          ++++|++.+.+|
T Consensus       382 L~~L~l~~n~l~~~~p  397 (968)
T PLN00113        382 LFKLILFSNSLEGEIP  397 (968)
T ss_pred             CCEEECcCCEecccCC
Confidence                455555555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.4e-26  Score=205.41  Aligned_cols=271  Identities=23%  Similarity=0.275  Sum_probs=159.1

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      +|++.|+|.+|        .+...-...+..++.|+.|||+.|.|... -...+.+-.++++|+|++|.+...-...|..
T Consensus       125 ghl~~L~L~~N--------~I~sv~se~L~~l~alrslDLSrN~is~i-~~~sfp~~~ni~~L~La~N~It~l~~~~F~~  195 (873)
T KOG4194|consen  125 GHLEKLDLRHN--------LISSVTSEELSALPALRSLDLSRNLISEI-PKPSFPAKVNIKKLNLASNRITTLETGHFDS  195 (873)
T ss_pred             cceeEEeeecc--------ccccccHHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCCCceEEeeccccccccccccccc
Confidence            56667777666        44444445566666777777777766664 3334444566777777777777666666666


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +.+|-+|.|++|.+++.+. ..+..+++|+.|+|..|++.....  ..+..+++|+.|.+.+|.+....+.   .|..+.
T Consensus       196 lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~  269 (873)
T KOG4194|consen  196 LNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQRNDISKLDDG---AFYGLE  269 (873)
T ss_pred             cchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehh--hhhcCchhhhhhhhhhcCcccccCc---ceeeec
Confidence            7777777777777776665 455667777777777776655422  2455566666666666655544332   344445


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      ++++|++..|++  ..+-..+...+..|++|++|+|.|....++..+.+++|+.|+|+.|+++...+..|..+..|+.|+
T Consensus       270 kme~l~L~~N~l--~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  270 KMEHLNLETNRL--QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             ccceeecccchh--hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence            666666666666  233333444444566666666666655556666666666666666666644445555566666666


Q ss_pred             CCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEe
Q 019237          292 LPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAI  342 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l  342 (344)
                      |++|.++......|-.+.+    +|++|.+++.++-...   ....|++|+.|++
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~---~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV---AFNGLPSLRKLRL  399 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh---hhccchhhhheee
Confidence            6666665443333444443    6666666666553222   2222555555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=6.5e-25  Score=196.26  Aligned_cols=284  Identities=20%  Similarity=0.228  Sum_probs=195.4

Q ss_pred             CCCCCccccceEEcCC--------------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCC
Q 019237           35 DKRDCCKWRGVRCSNK--------------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSP  100 (344)
Q Consensus        35 ~~~~~c~~~~~~c~~~--------------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  100 (344)
                      +++-.|.-.-..|+..              ....+.||+++|        .+...-+..|.++++|+++++..|.++.  
T Consensus        47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN--------kl~~id~~~f~nl~nLq~v~l~~N~Lt~--  116 (873)
T KOG4194|consen   47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN--------KLSHIDFEFFYNLPNLQEVNLNKNELTR--  116 (873)
T ss_pred             CCcCCCCceeeecCccccccccccccCCcCccceeeeecccc--------ccccCcHHHHhcCCcceeeeeccchhhh--
Confidence            3444566666666421              134567888888        5555556667888888888888888766  


Q ss_pred             ccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCC------------------------CCCCCCchhhhhc
Q 019237          101 VPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS------------------------NLFSLGSLEWLSH  156 (344)
Q Consensus       101 ~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~------------------------~l~~~~~~~~l~~  156 (344)
                      +|.+.+...+|++|+|.+|.+...-.+++..++.|+.||||.|                        .+++... ..+..
T Consensus       117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~  195 (873)
T KOG4194|consen  117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDS  195 (873)
T ss_pred             cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-ccccc
Confidence            6666555566777777666665554444444444555555544                        4444333 33444


Q ss_pred             CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhcc
Q 019237          157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS  236 (344)
Q Consensus       157 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  236 (344)
                      +.+|.+|.|+.|.++..+.  ..+..+++|+.|+|.+|.+.....   ..|.++.+|+.|.+..|.+  ..+....+..+
T Consensus       196 lnsL~tlkLsrNrittLp~--r~Fk~L~~L~~LdLnrN~irive~---ltFqgL~Sl~nlklqrN~I--~kL~DG~Fy~l  268 (873)
T KOG4194|consen  196 LNSLLTLKLSRNRITTLPQ--RSFKRLPKLESLDLNRNRIRIVEG---LTFQGLPSLQNLKLQRNDI--SKLDDGAFYGL  268 (873)
T ss_pred             cchheeeecccCcccccCH--HHhhhcchhhhhhccccceeeehh---hhhcCchhhhhhhhhhcCc--ccccCcceeee
Confidence            5555555555555555543  455556666666666666544322   2456667777777777777  44555667777


Q ss_pred             CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cc
Q 019237          237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GC  312 (344)
Q Consensus       237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l  312 (344)
                      .++++|+|+.|+++..-..++-++..|+.|+++.|.+...-++.+.-+++|+.|+|+.|.++..-++.|..+..    +|
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            88999999999998777788889999999999999999777888888899999999999999777777776666    99


Q ss_pred             cccccccccccccccccccccCCCCcceEe
Q 019237          313 TMNSLEGVLEIIKSHRAGRKSMRPLDWIAI  342 (344)
Q Consensus       313 ~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l  342 (344)
                      ++|++...-...+.      .+++|+.|||
T Consensus       349 s~Nsi~~l~e~af~------~lssL~~LdL  372 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFV------GLSSLHKLDL  372 (873)
T ss_pred             cccchHHHHhhHHH------HhhhhhhhcC
Confidence            99999988877766      5556666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=1.6e-23  Score=189.06  Aligned_cols=216  Identities=26%  Similarity=0.350  Sum_probs=123.5

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237           83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH  162 (344)
Q Consensus        83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~  162 (344)
                      ++.|+.++++.|.+...++|..+.++..|+.|+||+|++. +.|..+..-.++-.|+||+|+|.+++. ..+.+++-|-.
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn-~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN-SLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc-hHHHhhHhHhh
Confidence            3333333444444444445566666666666666655543 455556556666666666666666654 44555666666


Q ss_pred             EEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEE
Q 019237          163 LDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVL  242 (344)
Q Consensus       163 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  242 (344)
                      |+|++|++...++   .+..+.+|++|.+++|.+.-.-   +..+..+++|+.|.+++.+-+-..+|+.+-.. .+|..+
T Consensus       155 LDLS~NrLe~LPP---Q~RRL~~LqtL~Ls~NPL~hfQ---LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dv  227 (1255)
T KOG0444|consen  155 LDLSNNRLEMLPP---QIRRLSMLQTLKLSNNPLNHFQ---LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDV  227 (1255)
T ss_pred             hccccchhhhcCH---HHHHHhhhhhhhcCCChhhHHH---HhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhc
Confidence            6666666665543   4556666666666666543221   11222235556666665544333445444333 366666


Q ss_pred             EccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          243 DLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       243 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      |+|.|.+. .+|+.+-.+++|+.|+|++|+++ ++........+|+.|++|+|.++ .+|..+|+++.
T Consensus       228 DlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k  292 (1255)
T KOG0444|consen  228 DLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK  292 (1255)
T ss_pred             cccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence            77766666 66666666666677777777666 44444455556666666666666 55666666555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=1.1e-23  Score=190.08  Aligned_cols=221  Identities=27%  Similarity=0.323  Sum_probs=147.8

Q ss_pred             ccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhh
Q 019237           75 TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWL  154 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l  154 (344)
                      -+|+.+..+..|++|||++|.+..  +|..+..-+++-.|+||+|++.++....+.++..|-+|+||+|.+...+  ..+
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP--PQ~  169 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP--PQI  169 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC--HHH
Confidence            488889999999999999999987  7888888889999999988877665566678888889999999888776  667


Q ss_pred             hcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCC--CCCCchhhccccCCcccEEEcCCCCCCCCCCcchh
Q 019237          155 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP--PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL  232 (344)
Q Consensus       155 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  232 (344)
                      ..+..|++|.|++|.+....-  ..+.++..|++|++++.+.+  ..+.    .+..+.+|..+|++.|.++  .+|. .
T Consensus       170 RRL~~LqtL~Ls~NPL~hfQL--rQLPsmtsL~vLhms~TqRTl~N~Pt----sld~l~NL~dvDlS~N~Lp--~vPe-c  240 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPLNHFQL--RQLPSMTSLSVLHMSNTQRTLDNIPT----SLDDLHNLRDVDLSENNLP--IVPE-C  240 (1255)
T ss_pred             HHHhhhhhhhcCCChhhHHHH--hcCccchhhhhhhcccccchhhcCCC----chhhhhhhhhccccccCCC--cchH-H
Confidence            788888888888887765421  33455666777777765433  2222    2333466666777777662  2333 3


Q ss_pred             hhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCcc-ccchHHhhccC
Q 019237          233 FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG-ELSEMIQNLSG  310 (344)
Q Consensus       233 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  310 (344)
                      ....++|+.|+||+|+|+ .+........+|++|+++.|+++ .+|.+++++++|+.|.+.+|+++- -+|+.++++-.
T Consensus       241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence            333346667777777666 33333344455666666666666 566666666666666666665542 24555554444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=2.7e-17  Score=158.88  Aligned_cols=222  Identities=20%  Similarity=0.281  Sum_probs=125.9

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      .|+.|++++|.++.  +|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|.+...+  ..+  .++|++|+
T Consensus       200 ~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP--~~l--~s~L~~L~  268 (754)
T PRK15370        200 QITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELP--ERL--PSALQSLD  268 (754)
T ss_pred             CCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCC--hhH--hCCCCEEE
Confidence            45555555555543  333322  35555565555443 3343322  34566666666555443  222  23566666


Q ss_pred             ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237          165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL  244 (344)
Q Consensus       165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  244 (344)
                      +++|.+...+.   .+  .++|+.|++++|.+...+..+      ..+|+.|++++|.+.  .++..+   .++|+.|++
T Consensus       269 Ls~N~L~~LP~---~l--~~sL~~L~Ls~N~Lt~LP~~l------p~sL~~L~Ls~N~Lt--~LP~~l---~~sL~~L~L  332 (754)
T PRK15370        269 LFHNKISCLPE---NL--PEELRYLSVYDNSIRTLPAHL------PSGITHLNVQSNSLT--ALPETL---PPGLKTLEA  332 (754)
T ss_pred             CcCCccCcccc---cc--CCCCcEEECCCCccccCcccc------hhhHHHHHhcCCccc--cCCccc---cccceeccc
Confidence            66666554332   11  135666666666665543311      135666666666662  233222   247888888


Q ss_pred             cCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHh-hccC-cccccccccccc
Q 019237          245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQ-NLSG-GCTMNSLEGVLE  322 (344)
Q Consensus       245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~-~l~~n~l~~~~~  322 (344)
                      ++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|+|++|.++ .+|..+. .+.. ++++|++.+...
T Consensus       333 s~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~~LP~  405 (754)
T PRK15370        333 GENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPAALQIMQASRNNLVRLPE  405 (754)
T ss_pred             cCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcccCch
Confidence            888887 4665553  68999999999887 5666553  68999999999988 4565443 3333 888898874322


Q ss_pred             cccccccccccCCCCcceEec
Q 019237          323 IIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       323 ~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      ....   -...++.+..+++.
T Consensus       406 sl~~---~~~~~~~l~~L~L~  423 (754)
T PRK15370        406 SLPH---FRGEGPQPTRIIVE  423 (754)
T ss_pred             hHHH---HhhcCCCccEEEee
Confidence            2211   22234556666654

>PLN03210 Resistant to P

Probab=99.76  E-value=3.9e-17  Score=167.31  Aligned_cols=220  Identities=22%  Similarity=0.262  Sum_probs=107.5

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237           83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH  162 (344)
Q Consensus        83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~  162 (344)
                      +.+|+.|++.++.+..  ++..+..+++|+.|+++++...+.+|. +..+++|++|++++|... ...+..+..+++|++
T Consensus       610 ~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~  685 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL-VELPSSIQYLNKLED  685 (1153)
T ss_pred             ccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc-cccchhhhccCCCCE
Confidence            4455555555555543  444445555556666555544444442 445555555555554322 111234555555555


Q ss_pred             EEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCc-------------
Q 019237          163 LDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVY-------------  229 (344)
Q Consensus       163 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------------  229 (344)
                      |++++|......+  .. ..+++|+.|++++|......+.      ...+|+.|++++|.+.  .++             
T Consensus       686 L~L~~c~~L~~Lp--~~-i~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~i~--~lP~~~~l~~L~~L~l  754 (1153)
T PLN03210        686 LDMSRCENLEILP--TG-INLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDETAIE--EFPSNLRLENLDELIL  754 (1153)
T ss_pred             EeCCCCCCcCccC--Cc-CCCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCCccc--cccccccccccccccc
Confidence            5555543222211  01 1344555555554432211110      0123344444444321  111             


Q ss_pred             ----------------chhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237          230 ----------------PWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP  293 (344)
Q Consensus       230 ----------------~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~  293 (344)
                                      +.....+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|+++
T Consensus       755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls  833 (1153)
T PLN03210        755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS  833 (1153)
T ss_pred             cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence                            1111223467777777776665677777777777777777775444556544 45666666666


Q ss_pred             CCcCccccchHHhhccC-cccccccc
Q 019237          294 HNKLSGELSEMIQNLSG-GCTMNSLE  318 (344)
Q Consensus       294 ~n~l~~~~~~~~~~l~~-~l~~n~l~  318 (344)
                      +|.....+|....++.. ++++|.+.
T Consensus       834 ~c~~L~~~p~~~~nL~~L~Ls~n~i~  859 (1153)
T PLN03210        834 GCSRLRTFPDISTNISDLNLSRTGIE  859 (1153)
T ss_pred             CCCccccccccccccCEeECCCCCCc
Confidence            66443344433333333 45555444

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=9.5e-21  Score=162.87  Aligned_cols=238  Identities=29%  Similarity=0.349  Sum_probs=151.2

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL  132 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l  132 (344)
                      .++++++..+        .+. .+|++++.+..++.++.++|.+..  +|+.++.+..|.+++.++|.+. .+|+.++.+
T Consensus        69 ~l~vl~~~~n--------~l~-~lp~aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~  136 (565)
T KOG0472|consen   69 CLTVLNVHDN--------KLS-QLPAAIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELK-ELPDSIGRL  136 (565)
T ss_pred             ceeEEEeccc--------hhh-hCCHHHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhcccccee-ecCchHHHH
Confidence            4555666555        333 466667777777777777777655  6666777777777777766554 455566667


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS  212 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  212 (344)
                      ..|+.++..+|++++.+  ..+..+.+|..+++.+|.+...++   ....++.|++|+...|.+...+++    ++.+.+
T Consensus       137 ~~l~dl~~~~N~i~slp--~~~~~~~~l~~l~~~~n~l~~l~~---~~i~m~~L~~ld~~~N~L~tlP~~----lg~l~~  207 (565)
T KOG0472|consen  137 LDLEDLDATNNQISSLP--EDMVNLSKLSKLDLEGNKLKALPE---NHIAMKRLKHLDCNSNLLETLPPE----LGGLES  207 (565)
T ss_pred             hhhhhhhccccccccCc--hHHHHHHHHHHhhccccchhhCCH---HHHHHHHHHhcccchhhhhcCChh----hcchhh
Confidence            77777777777776555  556666667777777776666543   333367777777777776666653    344466


Q ss_pred             ccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchH-hhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       213 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      |+.|++..|++   ...|.+ ..+..|++++++.|+++ .+|. ..++++++..||+.+|+++ +.|..++-+.+|..||
T Consensus       208 L~~LyL~~Nki---~~lPef-~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  208 LELLYLRRNKI---RFLPEF-PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD  281 (565)
T ss_pred             hHHHHhhhccc---ccCCCC-CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence            77777777776   222332 33446777777777776 4443 3346777777777777777 6777777777777777


Q ss_pred             CCCCcCccccchHHhhc--cC-cccccccc
Q 019237          292 LPHNKLSGELSEMIQNL--SG-GCTMNSLE  318 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~l--~~-~l~~n~l~  318 (344)
                      +|+|.++ ..|..++++  .. .+-||++.
T Consensus       282 lSNN~is-~Lp~sLgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  282 LSNNDIS-SLPYSLGNLHLKFLALEGNPLR  310 (565)
T ss_pred             ccCCccc-cCCcccccceeeehhhcCCchH
Confidence            7777777 455555554  11 55666653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.73  E-value=9.4e-17  Score=154.46  Aligned_cols=201  Identities=26%  Similarity=0.275  Sum_probs=91.7

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237           84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L  163 (344)
                      ++|++|++++|.++.  +|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|.++..+.     .+++|++|
T Consensus       242 ~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~-----~p~~L~~L  307 (788)
T PRK15387        242 PELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV-----LPPGLQEL  307 (788)
T ss_pred             CCCcEEEecCCccCc--ccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccccccc-----ccccccee
Confidence            345555555555443  2221   234455555544433 12221   1345556666665554432     23567777


Q ss_pred             EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchh-----------
Q 019237          164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL-----------  232 (344)
Q Consensus       164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----------  232 (344)
                      ++++|.+...+.++      ..|+.|++.+|.+...+.       ...+|++|++++|.+.  .++...           
T Consensus       308 dLS~N~L~~Lp~lp------~~L~~L~Ls~N~L~~LP~-------lp~~Lq~LdLS~N~Ls--~LP~lp~~L~~L~Ls~N  372 (788)
T PRK15387        308 SVSDNQLASLPALP------SELCKLWAYNNQLTSLPT-------LPSGLQELSVSDNQLA--SLPTLPSELYKLWAYNN  372 (788)
T ss_pred             ECCCCccccCCCCc------ccccccccccCccccccc-------cccccceEecCCCccC--CCCCCCcccceehhhcc
Confidence            77777666543211      123334444444333221       0134555555555552  222100           


Q ss_pred             -----hhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhh
Q 019237          233 -----FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQN  307 (344)
Q Consensus       233 -----~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  307 (344)
                           .....+|+.|++++|.++ .+|..   .++|+.|++++|+++ .+|...   .+|+.|++++|.++ .+|..++.
T Consensus       373 ~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~  443 (788)
T PRK15387        373 RLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIH  443 (788)
T ss_pred             ccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhh
Confidence                 001124555555555554 23322   134555555555555 344321   24555666666655 45555555


Q ss_pred             ccC----cccccccccccc
Q 019237          308 LSG----GCTMNSLEGVLE  322 (344)
Q Consensus       308 l~~----~l~~n~l~~~~~  322 (344)
                      +..    ++++|+|++..+
T Consensus       444 L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        444 LSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             ccCCCeEECCCCCCCchHH
Confidence            544    666666665544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=2.6e-20  Score=160.17  Aligned_cols=243  Identities=26%  Similarity=0.333  Sum_probs=189.5

Q ss_pred             EEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCC
Q 019237           54 VKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS  133 (344)
Q Consensus        54 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~  133 (344)
                      +..+.++.|        .+. .+.+.+.++..+.++++.+|.+..  .|+.++++..++.++.++|++. ++|+.+..+.
T Consensus        47 l~~lils~N--------~l~-~l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~  114 (565)
T KOG0472|consen   47 LQKLILSHN--------DLE-VLREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI  114 (565)
T ss_pred             hhhhhhccC--------chh-hccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence            456677777        443 455567888888899998888876  7888888888888888877654 6778888888


Q ss_pred             CCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237          134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI  213 (344)
Q Consensus       134 ~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  213 (344)
                      +|..+++++|.+.+.+  +.+..+..|..++..+|++...+.   .+..+.++..+.+.+|.+...++....    ++.|
T Consensus       115 ~l~~l~~s~n~~~el~--~~i~~~~~l~dl~~~~N~i~slp~---~~~~~~~l~~l~~~~n~l~~l~~~~i~----m~~L  185 (565)
T KOG0472|consen  115 SLVKLDCSSNELKELP--DSIGRLLDLEDLDATNNQISSLPE---DMVNLSKLSKLDLEGNKLKALPENHIA----MKRL  185 (565)
T ss_pred             hhhhhhccccceeecC--chHHHHhhhhhhhccccccccCch---HHHHHHHHHHhhccccchhhCCHHHHH----HHHH
Confidence            8888999888888666  667888888888888888877764   677777888888888888877764322    4788


Q ss_pred             cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccc-cCCCCCCEEeC
Q 019237          214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFF-GNMCSLNRLFL  292 (344)
Q Consensus       214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~L  292 (344)
                      +++|...|.+  .++|+.+... .+|+-|++..|++. .+| .|..|+.|++|+++.|++. .+|... +.+++|..|||
T Consensus       186 ~~ld~~~N~L--~tlP~~lg~l-~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL  259 (565)
T KOG0472|consen  186 KHLDCNSNLL--ETLPPELGGL-ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL  259 (565)
T ss_pred             Hhcccchhhh--hcCChhhcch-hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence            8888888888  4667665544 47888888888888 777 7788888889999888887 566654 47888899999


Q ss_pred             CCCcCccccchHHhhccC----cccccccccccccc
Q 019237          293 PHNKLSGELSEMIQNLSG----GCTMNSLEGVLEII  324 (344)
Q Consensus       293 ~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~  324 (344)
                      .+|+++ .+|+.+|-+++    |+|+|.|++..+..
T Consensus       260 RdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL  294 (565)
T KOG0472|consen  260 RDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL  294 (565)
T ss_pred             cccccc-cCchHHHHhhhhhhhcccCCccccCCccc
Confidence            999888 77888888776    88989888766643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.2e-18  Score=155.31  Aligned_cols=225  Identities=24%  Similarity=0.220  Sum_probs=100.5

Q ss_pred             cchhhhcCCCCCEEeCCCCCCCC--C---CccccccCCCCCcEEEccCCcCCCcCCcccccCCC---CcEEEccCCCCCC
Q 019237           76 ISPALLKLHDLRHLDLSNNHFGG--S---PVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG---LVYLRLENSNLFS  147 (344)
Q Consensus        76 ~~~~~~~l~~L~~L~l~~~~~~~--~---~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~---L~~L~ls~~~l~~  147 (344)
                      ++..+...+.+++++++++.+..  .   .++..+..+++|++|++++|.+....+..+..+..   |++|++++|.+..
T Consensus        43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence            44445555556666666555441  0   02233444556666666655555444433333333   6666666655542


Q ss_pred             CCch---hhhhcC-CCCCEEEccccccCCC--CchHHHHhhcccCcEEEecCCCCCCCCC-chhhccccCCcccEEEcCC
Q 019237          148 LGSL---EWLSHL-SSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLRSCALPPINP-SFIWHFNLSTSIETLDLSD  220 (344)
Q Consensus       148 ~~~~---~~l~~~-~~L~~L~l~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~  220 (344)
                      ....   ..+..+ ++|++|++++|.+...  ..+...+..+.+|++|++++|.+.+... .....+...++|++|++++
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  202 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN  202 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence            1111   123334 5556666666655532  1122334444556666665555543211 0011122224555666655


Q ss_pred             CCCCCCCC--cchhhhccCCccEEEccCCcCcCCchHhhh-c----CCCCCEEEccCCccCC----CccccccCCCCCCE
Q 019237          221 NNLPSSSV--YPWLFNLSRNILVLDLAFNSLRGSIPEAFQ-H----MVSLKSLHLTDNELEG----GIPKFFGNMCSLNR  289 (344)
Q Consensus       221 n~l~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~----~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~  289 (344)
                      |.+.+...  ........++|++|++++|.+++.....+. .    .+.|++|++++|.+++    .+...+..+++|+.
T Consensus       203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~  282 (319)
T cd00116         203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE  282 (319)
T ss_pred             CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence            55532100  011122233555666665555532221111 1    2455556665555542    12223334455556


Q ss_pred             EeCCCCcCccc
Q 019237          290 LFLPHNKLSGE  300 (344)
Q Consensus       290 L~L~~n~l~~~  300 (344)
                      +++++|.++..
T Consensus       283 l~l~~N~l~~~  293 (319)
T cd00116         283 LDLRGNKFGEE  293 (319)
T ss_pred             EECCCCCCcHH
Confidence            66665555533

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.72  E-value=9.9e-17  Score=154.29  Aligned_cols=214  Identities=23%  Similarity=0.241  Sum_probs=142.4

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      +.++.|++++|        .++ .+|..   .++|+.|++++|.+..  ++..   ..+|+.|++++|.+.. +|.   .
T Consensus       242 ~~Lk~LdLs~N--------~Lt-sLP~l---p~sL~~L~Ls~N~L~~--Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~  300 (788)
T PRK15387        242 PELRTLEVSGN--------QLT-SLPVL---PPGLLELSIFSNPLTH--LPAL---PSGLCKLWIFGNQLTS-LPV---L  300 (788)
T ss_pred             CCCcEEEecCC--------ccC-cccCc---ccccceeeccCCchhh--hhhc---hhhcCEEECcCCcccc-ccc---c
Confidence            45677777777        444 23432   3578889999988765  4443   3567788888776653 443   2


Q ss_pred             CCCCcEEEccCCCCCCCCch-hhh----------h---c-CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCC
Q 019237          132 LSGLVYLRLENSNLFSLGSL-EWL----------S---H-LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL  196 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~-~~l----------~---~-~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  196 (344)
                      .++|++|++++|.+...+.. ..+          .   . ..+|++|++++|.+...+..      ..+|+.|++++|.+
T Consensus       301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L  374 (788)
T PRK15387        301 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRL  374 (788)
T ss_pred             ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC------Ccccceehhhcccc
Confidence            36788888888877765421 000          0   0 12455555555555443321      13445555555555


Q ss_pred             CCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCC
Q 019237          197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG  276 (344)
Q Consensus       197 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  276 (344)
                      ...+.       ...+|+.|++++|.+.  .++.    ..++|+.|++++|.++ .+|..+   .+|+.|++++|+++ .
T Consensus       375 ~~LP~-------l~~~L~~LdLs~N~Lt--~LP~----l~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~  436 (788)
T PRK15387        375 TSLPA-------LPSGLKELIVSGNRLT--SLPV----LPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-R  436 (788)
T ss_pred             ccCcc-------cccccceEEecCCccc--CCCC----cccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-c
Confidence            44322       1257889999999883  3333    2347999999999998 566543   46888999999998 7


Q ss_pred             ccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          277 IPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       277 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      +|..+.++++|+.|+|++|.+++..+..+..+.+
T Consensus       437 LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s  470 (788)
T PRK15387        437 LPESLIHLSSETTVNLEGNPLSERTLQALREITS  470 (788)
T ss_pred             cChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence            8998999999999999999999999888877655

>PLN03210 Resistant to P

Probab=99.71  E-value=5.7e-16  Score=158.81  Aligned_cols=236  Identities=23%  Similarity=0.233  Sum_probs=146.7

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL  132 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l  132 (344)
                      .++.|+++++        .+. .++..+..+++|+.|+++++..... +| .+..+++|+.|++++|.....+|..+.++
T Consensus       612 ~L~~L~L~~s--------~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        612 NLVKLQMQGS--------KLE-KLWDGVHSLTGLRNIDLRGSKNLKE-IP-DLSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             CCcEEECcCc--------ccc-ccccccccCCCCCEEECCCCCCcCc-CC-ccccCCcccEEEecCCCCccccchhhhcc
Confidence            4555555554        333 4566677888899999988754332 44 46778888899998888888888888888


Q ss_pred             CCCcEEEccCCC-CCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch--------
Q 019237          133 SGLVYLRLENSN-LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF--------  203 (344)
Q Consensus       133 ~~L~~L~ls~~~-l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------  203 (344)
                      .+|++|++++|. +...+.  .+ .+++|++|++++|......+     ....+|+.|++.+|.+...+...        
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~--~i-~l~sL~~L~Lsgc~~L~~~p-----~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L  752 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPT--GI-NLKSLYRLNLSGCSRLKSFP-----DISTNISWLDLDETAIEEFPSNLRLENLDEL  752 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCC--cC-CCCCCCEEeCCCCCCccccc-----cccCCcCeeecCCCccccccccccccccccc
Confidence            888888888874 333332  12 56778888877775332211     12345666666666554433210        


Q ss_pred             ------------------hhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCE
Q 019237          204 ------------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS  265 (344)
Q Consensus       204 ------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  265 (344)
                                        ......+++|+.|++++|.... .++.. ...+++|+.|++++|...+.+|..+ .+++|+.
T Consensus       753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~  829 (1153)
T PLN03210        753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLES  829 (1153)
T ss_pred             cccccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence                              0001123567788888776533 44444 3445678888888875444666554 5677778


Q ss_pred             EEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccc
Q 019237          266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTM  314 (344)
Q Consensus       266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~  314 (344)
                      |++++|.....+|..   ..+|+.|+|++|.++ .+|..+..++.    ++++
T Consensus       830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence            888777544344442   246777777777776 56666666555    5555

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.1e-17  Score=148.99  Aligned_cols=264  Identities=22%  Similarity=0.212  Sum_probs=175.0

Q ss_pred             ccchhhhcCCCCCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCcCCC------cCCcccccCCCCcEEEccCCCC
Q 019237           75 TISPALLKLHDLRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGTSLL------KVPRPFQYLSGLVYLRLENSNL  145 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~------~~~~~~~~l~~L~~L~ls~~~l  145 (344)
                      .....+..+..|++|+++++.++...   ++..+...+++++++++++.+..      .++..+..+++|++|++++|.+
T Consensus        14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            34455667777999999999885431   44556677889999999877652      2334556788999999999988


Q ss_pred             CCCCchhhhhcCC---CCCEEEccccccCCC--CchHHHHhhc-ccCcEEEecCCCCCCCCC-chhhccccCCcccEEEc
Q 019237          146 FSLGSLEWLSHLS---SLRHLDLSYINLTKS--SDWFQVVAKL-RSLKTLVLRSCALPPINP-SFIWHFNLSTSIETLDL  218 (344)
Q Consensus       146 ~~~~~~~~l~~~~---~L~~L~l~~~~~~~~--~~~~~~l~~~-~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l  218 (344)
                      ..... ..+..+.   +|++|++++|.+...  ..+...+..+ ++|++|++++|.++.... .+...+..+.+|++|++
T Consensus        94 ~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l  172 (319)
T cd00116          94 GPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL  172 (319)
T ss_pred             ChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence            74322 3344444   499999999987743  1222455666 899999999999875322 11223445578999999


Q ss_pred             CCCCCCCCCCcchhh---hccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCCcccccc-----CCCC
Q 019237          219 SDNNLPSSSVYPWLF---NLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGGIPKFFG-----NMCS  286 (344)
Q Consensus       219 ~~n~l~~~~~~~~~~---~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~  286 (344)
                      ++|.+.+ .....+.   ...++|++|++++|.+++.    +...+..+++|++|++++|.+++.....+.     ..+.
T Consensus       173 ~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~  251 (319)
T cd00116         173 ANNGIGD-AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS  251 (319)
T ss_pred             cCCCCch-HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence            9998864 2222222   2334899999999998753    345567788999999999998852222221     2479


Q ss_pred             CCEEeCCCCcCccc----cchHHhhccC----cccccccccccccccccccccccC-CCCcceEe
Q 019237          287 LNRLFLPHNKLSGE----LSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSM-RPLDWIAI  342 (344)
Q Consensus       287 L~~L~L~~n~l~~~----~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l-~~L~~l~l  342 (344)
                      |+.|++++|.+++.    +++.+...+.    ++++|.++..-.  ........+. ++|+.+++
T Consensus       252 L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~--~~~~~~~~~~~~~~~~~~~  314 (319)
T cd00116         252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA--QLLAESLLEPGNELESLWV  314 (319)
T ss_pred             ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH--HHHHHHHhhcCCchhhccc
Confidence            99999999998732    2334443333    899999876532  2222233344 56666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=1e-16  Score=154.82  Aligned_cols=222  Identities=21%  Similarity=0.325  Sum_probs=150.0

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ..++.|++++|        .++ .+|..+.  ++|++|++++|.++.  +|..+.  ++|+.|++++|.+. .+|..+. 
T Consensus       199 ~~L~~L~Ls~N--------~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-  261 (754)
T PRK15370        199 EQITTLILDNN--------ELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRIT-ELPERLP-  261 (754)
T ss_pred             cCCcEEEecCC--------CCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccC-cCChhHh-
Confidence            35777777777        455 3555443  489999999999875  665443  57999999988876 5666554 


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                       .+|++|++++|.+...+.  .+  .++|++|++++|.+...+.   .+  .+.|+.|++++|.+...+..      ..+
T Consensus       262 -s~L~~L~Ls~N~L~~LP~--~l--~~sL~~L~Ls~N~Lt~LP~---~l--p~sL~~L~Ls~N~Lt~LP~~------l~~  325 (754)
T PRK15370        262 -SALQSLDLFHNKISCLPE--NL--PEELRYLSVYDNSIRTLPA---HL--PSGITHLNVQSNSLTALPET------LPP  325 (754)
T ss_pred             -CCCCEEECcCCccCcccc--cc--CCCCcEEECCCCccccCcc---cc--hhhHHHHHhcCCccccCCcc------ccc
Confidence             579999999998886552  22  2589999999998876543   11  13677788888887765432      125


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      +|+.|++++|.++  .++..+   +++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ..|+.|+
T Consensus       326 sL~~L~Ls~N~Lt--~LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld  394 (754)
T PRK15370        326 GLKTLEAGENALT--SLPASL---PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQ  394 (754)
T ss_pred             cceeccccCCccc--cCChhh---cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence            7888888888773  344333   247888888888877 5665553  57888888888877 5565543  3677788


Q ss_pred             CCCCcCccccchHHhhc----cC----cccccccc
Q 019237          292 LPHNKLSGELSEMIQNL----SG----GCTMNSLE  318 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~l----~~----~l~~n~l~  318 (344)
                      +++|.++ .+|..+..+    +.    ++.+|+++
T Consensus       395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            8888777 445444332    22    56666653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.67  E-value=3.7e-18  Score=146.74  Aligned_cols=247  Identities=25%  Similarity=0.229  Sum_probs=165.7

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccC-CcCCCcCCcccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQ  130 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~  130 (344)
                      ...+.|.|..|        .++...+.+|+.++.|+.|||++|.|+.+ -|..|..++.|..|-+.+ |++.......|.
T Consensus        67 ~~tveirLdqN--------~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   67 PETVEIRLDQN--------QISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             CcceEEEeccC--------CcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            56777888887        67777777889999999999999998886 778888888888877776 555555556778


Q ss_pred             cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCC----------
Q 019237          131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN----------  200 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----------  200 (344)
                      ++..|+.|.+.-|.+.-... ..+..+++|..|.+..|.+.....  ..+..+..++.+++..|.+...-          
T Consensus       138 gL~slqrLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             hHHHHHHHhcChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCccccccccchhhhHHh
Confidence            88888888888877774443 778888899888888888766643  35666777777777766521110          


Q ss_pred             --Cchhhccc-------------------cCCcccEE--EcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhh
Q 019237          201 --PSFIWHFN-------------------LSTSIETL--DLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF  257 (344)
Q Consensus       201 --~~~~~~~~-------------------~~~~L~~L--~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  257 (344)
                        +.....+.                   ....++.+  .++.....+...|...++.+++|++|++++|++++.-+.+|
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence              00000000                   00112222  12222222234555566667778888888888876667777


Q ss_pred             hcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       258 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      .....+++|.|..|++...--..|.++..|+.|+|.+|.++...|..|..+.+
T Consensus       295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            77777777888777776444456777777777888888777666666665544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.65  E-value=4.7e-18  Score=159.99  Aligned_cols=206  Identities=27%  Similarity=0.303  Sum_probs=147.1

Q ss_pred             cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      ...+|++++++.+.+..  +|++++.+.+|+.+...+|++ ..+|..+....+|+.|.+.+|.+...+  ........|+
T Consensus       239 ~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip--~~le~~~sL~  313 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIP--PFLEGLKSLR  313 (1081)
T ss_pred             ccccceeeecchhhhhc--chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCC--Ccccccceee
Confidence            34578888888888876  668888888888888887776 566666666677777777777766554  4455667777


Q ss_pred             EEEccccccCCCCchHH-----------------------HHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEc
Q 019237          162 HLDLSYINLTKSSDWFQ-----------------------VVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDL  218 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~-----------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  218 (344)
                      +|+|..|.+...++...                       .-..++.|+.|++.+|.+++...   ..+.+...|+.|++
T Consensus       314 tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~---p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  314 TLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF---PVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch---hhhccccceeeeee
Confidence            77777777665533110                       11223466777777777766442   24555678888888


Q ss_pred             CCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237          219 SDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       219 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      ++|++  ..++......++.|++|+||+|+++ .+|+.+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++
T Consensus       391 syNrL--~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  391 SYNRL--NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             ccccc--ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            88888  4577777777777888888888888 77788888888888888888877 666 5777888888888888887


Q ss_pred             cc
Q 019237          299 GE  300 (344)
Q Consensus       299 ~~  300 (344)
                      ..
T Consensus       466 ~~  467 (1081)
T KOG0618|consen  466 EV  467 (1081)
T ss_pred             hh
Confidence            44

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.62  E-value=3e-17  Score=154.59  Aligned_cols=224  Identities=25%  Similarity=0.291  Sum_probs=171.6

Q ss_pred             CCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccc
Q 019237           50 KTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPF  129 (344)
Q Consensus        50 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~  129 (344)
                      ....++.+|++.+        .+. .+|..++.+.+|+.++..+|.++.  ++..+....+|+.|.+..|.+. .+|...
T Consensus       239 ~p~nl~~~dis~n--------~l~-~lp~wi~~~~nle~l~~n~N~l~~--lp~ri~~~~~L~~l~~~~nel~-yip~~l  306 (1081)
T KOG0618|consen  239 VPLNLQYLDISHN--------NLS-NLPEWIGACANLEALNANHNRLVA--LPLRISRITSLVSLSAAYNELE-YIPPFL  306 (1081)
T ss_pred             ccccceeeecchh--------hhh-cchHHHHhcccceEecccchhHHh--hHHHHhhhhhHHHHHhhhhhhh-hCCCcc
Confidence            4456777777776        555 467888999999999999999965  7788888888888888866654 455556


Q ss_pred             ccCCCCcEEEccCCCCCCCCchhhhh-------------------------cCCCCCEEEccccccCCCCchHHHHhhcc
Q 019237          130 QYLSGLVYLRLENSNLFSLGSLEWLS-------------------------HLSSLRHLDLSYINLTKSSDWFQVVAKLR  184 (344)
Q Consensus       130 ~~l~~L~~L~ls~~~l~~~~~~~~l~-------------------------~~~~L~~L~l~~~~~~~~~~~~~~l~~~~  184 (344)
                      ..+..|++|+|..|.+...+. ..+.                         .++.|+.|.+.+|.+.+.-  +..+..++
T Consensus       307 e~~~sL~tLdL~~N~L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~  383 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC--FPVLVNFK  383 (1081)
T ss_pred             cccceeeeeeehhccccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc--hhhhcccc
Confidence            667888888888888776553 1111                         1245667777777777653  24788999


Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      +|+.|+|++|.+...+..   .+..+..|++|+++||.+  .+++..+. .+..|+.|...+|.+. .+| .+..++.|+
T Consensus       384 hLKVLhLsyNrL~~fpas---~~~kle~LeeL~LSGNkL--~~Lp~tva-~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~  455 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPAS---KLRKLEELEELNLSGNKL--TTLPDTVA-NLGRLHTLRAHSNQLL-SFP-ELAQLPQLK  455 (1081)
T ss_pred             ceeeeeecccccccCCHH---HHhchHHhHHHhcccchh--hhhhHHHH-hhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence            999999999999988753   456668999999999999  45665444 4458999999999998 888 778899999


Q ss_pred             EEEccCCccCC-CccccccCCCCCCEEeCCCCcC
Q 019237          265 SLHLTDNELEG-GIPKFFGNMCSLNRLFLPHNKL  297 (344)
Q Consensus       265 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l  297 (344)
                      .+|++.|.++. .+|.... .++|++||+++|.-
T Consensus       456 ~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  456 VLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             EEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence            99999999885 3344333 38999999999973

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.57  E-value=5.2e-16  Score=133.64  Aligned_cols=235  Identities=25%  Similarity=0.294  Sum_probs=175.9

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccC-CCCCCCCchhhhhcCCCCCEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLEN-SNLFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~-~~l~~~~~~~~l~~~~~L~~L  163 (344)
                      ....+.|..|.|+.. -+..|+.+++|+.|+|++|.+..+.|.+|.++.+|-.|.+.+ |.|+..+. ..+..+..|+.|
T Consensus        68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHH
Confidence            567899999999986 667899999999999999999999999999999887766665 89997775 788999999999


Q ss_pred             EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcch------------
Q 019237          164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW------------  231 (344)
Q Consensus       164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------  231 (344)
                      .+.-|.+.-...  +.+..++++..|.+..|.+......   .+..+.+++.+.+..|.+...--.++            
T Consensus       146 llNan~i~Cir~--~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  146 LLNANHINCIRQ--DALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             hcChhhhcchhH--HHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence            999888876643  6889999999999999987765532   34444666666666655210000000            


Q ss_pred             --------------------hhhccCCccEE--Ecc-CCcCcCC-chHhhhcCCCCCEEEccCCccCCCccccccCCCCC
Q 019237          232 --------------------LFNLSRNILVL--DLA-FNSLRGS-IPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL  287 (344)
Q Consensus       232 --------------------~~~~~~~L~~L--~ls-~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L  287 (344)
                                          ..+....++.+  .++ .+...+. ....|+.+++|++|++++|+++..-+.+|.+...+
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence                                00001122222  111 1222222 23578999999999999999998778899999999


Q ss_pred             CEEeCCCCcCccccchHHhhccC----cccccccccccccccc
Q 019237          288 NRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKS  326 (344)
Q Consensus       288 ~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~  326 (344)
                      ++|.|..|++...-...|.++..    .+.+|+|+..-|+.++
T Consensus       301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            99999999998665566666655    8999999998888776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=1e-16  Score=123.04  Aligned_cols=184  Identities=25%  Similarity=0.308  Sum_probs=115.0

Q ss_pred             CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC
Q 019237          107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL  186 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L  186 (344)
                      .+.+++.|.+++|.+. .+|..+..+.+|+.|++++|.+++.+  ..++.+++|++|+++-|++...+   ..+++++.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp--~~issl~klr~lnvgmnrl~~lp---rgfgs~p~l  104 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMNRLNILP---RGFGSFPAL  104 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcC--hhhhhchhhhheecchhhhhcCc---cccCCCchh
Confidence            3556666777766554 45566777778888888888877666  56777888888888777766554   367777788


Q ss_pred             cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEE
Q 019237          187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL  266 (344)
Q Consensus       187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  266 (344)
                      +.|++.+|.+.+..-  ...|-.++.|+.|.++.|.+  .-+++.+.+. .+|+.|.+..|.+. .+|..++.+..|++|
T Consensus       105 evldltynnl~e~~l--pgnff~m~tlralyl~dndf--e~lp~dvg~l-t~lqil~lrdndll-~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSL--PGNFFYMTTLRALYLGDNDF--EILPPDVGKL-TNLQILSLRDNDLL-SLPKEIGDLTRLREL  178 (264)
T ss_pred             hhhhccccccccccC--CcchhHHHHHHHHHhcCCCc--ccCChhhhhh-cceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence            888887777654321  12233346666777777766  3444554443 36777777766666 666666667777777


Q ss_pred             EccCCccCCCccccccCC---CCCCEEeCCCCcCccccch
Q 019237          267 HLTDNELEGGIPKFFGNM---CSLNRLFLPHNKLSGELSE  303 (344)
Q Consensus       267 ~l~~n~~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~  303 (344)
                      .+++|+++ .+|..++.+   .+=+.+.+.+|.....+.+
T Consensus       179 hiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             hcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            77777766 555544432   2223444455554444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=1.1e-16  Score=122.84  Aligned_cols=178  Identities=25%  Similarity=0.322  Sum_probs=149.7

Q ss_pred             ccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcccc
Q 019237          130 QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL  209 (344)
Q Consensus       130 ~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  209 (344)
                      ..+..+..|.+|.|.++.++  ..++.+.+|+.|++.+|++...+.   .++++++|+.|++.-|.+...+.    .|..
T Consensus        30 f~~s~ITrLtLSHNKl~~vp--pnia~l~nlevln~~nnqie~lp~---~issl~klr~lnvgmnrl~~lpr----gfgs  100 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVP--PNIAELKNLEVLNLSNNQIEELPT---SISSLPKLRILNVGMNRLNILPR----GFGS  100 (264)
T ss_pred             cchhhhhhhhcccCceeecC--CcHHHhhhhhhhhcccchhhhcCh---hhhhchhhhheecchhhhhcCcc----ccCC
Confidence            35677888999999999766  678999999999999999998875   88999999999999998877654    4677


Q ss_pred             CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCE
Q 019237          210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNR  289 (344)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  289 (344)
                      ++.|+.||+.+|++....++..++ .+..|..|.+++|.+. .+|..++.+.+|+.|.+.+|.+. .+|..++.+..|++
T Consensus       101 ~p~levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre  177 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE  177 (264)
T ss_pred             CchhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence            799999999999997644554444 4458999999999999 88889999999999999999988 79999999999999


Q ss_pred             EeCCCCcCccccchHHhhccC-------cccccccccc
Q 019237          290 LFLPHNKLSGELSEMIQNLSG-------GCTMNSLEGV  320 (344)
Q Consensus       290 L~L~~n~l~~~~~~~~~~l~~-------~l~~n~l~~~  320 (344)
                      |.+.+|.++ .+|..++.+.-       .+.+|.+...
T Consensus       178 lhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  178 LHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             Hhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            999999999 77777776533       5666766443

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=1.1e-13  Score=133.17  Aligned_cols=150  Identities=27%  Similarity=0.393  Sum_probs=121.1

Q ss_pred             cCCCHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCc-----cccceEEcCC--C--CcEEEEEcCCCCcccccCcccc
Q 019237            3 MRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCC-----KWRGVRCSNK--T--GHVKVLNLRRSDDENARGKVLK   73 (344)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c-----~~~~~~c~~~--~--~~l~~l~l~~~~~~~~~~~~~~   73 (344)
                      .++.+.|++||++++.++.++..  .+|..     +.|     .|.|+.|...  .  ..++.|+|+++        .+.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n--------~L~  431 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ--------GLR  431 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCC--------Ccc
Confidence            45678899999999999965532  37863     234     7999999532  1  25889999998        889


Q ss_pred             cccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhh
Q 019237           74 GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEW  153 (344)
Q Consensus        74 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~  153 (344)
                      |.+|..++.+++|+.|+|++|.+.+. +|..++.+++|+.|+|++|++.+.+|..++++++|++|++++|.+.. ..+..
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g-~iP~~  509 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG-RVPAA  509 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc-cCChH
Confidence            99999999999999999999999886 88899999999999999999999999999999999999999998873 22344


Q ss_pred             hhc-CCCCCEEEccccc
Q 019237          154 LSH-LSSLRHLDLSYIN  169 (344)
Q Consensus       154 l~~-~~~L~~L~l~~~~  169 (344)
                      +.. ..++..+++.+|.
T Consensus       510 l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        510 LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             HhhccccCceEEecCCc
Confidence            443 2355666666664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.50  E-value=7.2e-15  Score=124.87  Aligned_cols=244  Identities=20%  Similarity=0.189  Sum_probs=175.7

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCC--Ccc-------ccccCCCCCcEEEccCCcC
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGS--PVP-------EFIGSLSRLRYLNLSCGTS  121 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~-------~~l~~l~~L~~L~Ls~~~~  121 (344)
                      ...++.++|+||.++.-.    ...+...+.+.+.|+..+++.-.....  .+|       +.+-.+++|++++||+|.+
T Consensus        29 ~~s~~~l~lsgnt~G~EA----a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEA----ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             cCceEEEeccCCchhHHH----HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            456899999999654322    123556677788899998876432111  123       2344578999999999998


Q ss_pred             CCcCCccc----ccCCCCcEEEccCCCCCCCCch------------hhhhcCCCCCEEEccccccCCCC--chHHHHhhc
Q 019237          122 LLKVPRPF----QYLSGLVYLRLENSNLFSLGSL------------EWLSHLSSLRHLDLSYINLTKSS--DWFQVVAKL  183 (344)
Q Consensus       122 ~~~~~~~~----~~l~~L~~L~ls~~~l~~~~~~------------~~l~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~  183 (344)
                      ....+..+    ..+..|++|.|.+|.+......            .....-++|+.+..++|++....  .+...+...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            87666555    4578999999999998754421            22345679999999999987763  345677888


Q ss_pred             ccCcEEEecCCCCCCCCC-chhhccccCCcccEEEcCCCCCCC--CCCcchhhhccCCccEEEccCCcCcCCchHhh---
Q 019237          184 RSLKTLVLRSCALPPINP-SFIWHFNLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF---  257 (344)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---  257 (344)
                      +.|+.+.+..|.+..... -....+..+++|+.||+..|.++.  ..........++.|+.|++++|.++......+   
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            999999999998865443 223456777999999999998842  11222334455579999999999986544433   


Q ss_pred             --hcCCCCCEEEccCCccCC----CccccccCCCCCCEEeCCCCcCc
Q 019237          258 --QHMVSLKSLHLTDNELEG----GIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       258 --~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                        ...+.|+.|.+.+|.++.    .+...+...|.|..|+|++|.+.
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence              347899999999999885    23344566899999999999993

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.32  E-value=4e-13  Score=114.40  Aligned_cols=239  Identities=23%  Similarity=0.250  Sum_probs=166.3

Q ss_pred             hhhhcCCCCCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCcCCC----cCCccc-------ccCCCCcEEEccCC
Q 019237           78 PALLKLHDLRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGTSLL----KVPRPF-------QYLSGLVYLRLENS  143 (344)
Q Consensus        78 ~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~----~~~~~~-------~~l~~L~~L~ls~~  143 (344)
                      +....+..++.+++++|.+....   +.+.+.+.+.|+..+++ +-+.+    .+|+.+       ..+++|++|+||.|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            34556778999999999986541   33455677889999998 44444    344333       35679999999999


Q ss_pred             CCCCCCch---hhhhcCCCCCEEEccccccCCCCc--h---------HHHHhhcccCcEEEecCCCCCCCCCc-hhhccc
Q 019237          144 NLFSLGSL---EWLSHLSSLRHLDLSYINLTKSSD--W---------FQVVAKLRSLKTLVLRSCALPPINPS-FIWHFN  208 (344)
Q Consensus       144 ~l~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~---------~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~  208 (344)
                      .+......   ..+.+++.|++|.|.+|.+.....  +         ..-..+-+.|+++...+|++...... +...+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            88754442   456778999999999998876521  0         11233457899999999988765532 233455


Q ss_pred             cCCcccEEEcCCCCCCCC--CCcchhhhccCCccEEEccCCcCcC----CchHhhhcCCCCCEEEccCCccCCCccccc-
Q 019237          209 LSTSIETLDLSDNNLPSS--SVYPWLFNLSRNILVLDLAFNSLRG----SIPEAFQHMVSLKSLHLTDNELEGGIPKFF-  281 (344)
Q Consensus       209 ~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-  281 (344)
                      ..+.|+.+.+..|.+...  +.....+..++.|+.|||.+|.++.    .+...++.+++|+.|++++|.+......++ 
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            557899999999887421  2333455677899999999998874    345567778899999999998886544332 


Q ss_pred             ----cCCCCCCEEeCCCCcCccccch----HHhhccC----ccccccc
Q 019237          282 ----GNMCSLNRLFLPHNKLSGELSE----MIQNLSG----GCTMNSL  317 (344)
Q Consensus       282 ----~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~----~l~~n~l  317 (344)
                          ...|+|+.|.+.+|.++.....    .+...+.    ++++|.+
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                3468999999999988744222    2222222    8888888

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=5.5e-13  Score=116.62  Aligned_cols=217  Identities=22%  Similarity=0.242  Sum_probs=135.2

Q ss_pred             cchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCC--cccccCCCCcEEEccCCCCCCCCchhh
Q 019237           76 ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP--RPFQYLSGLVYLRLENSNLFSLGSLEW  153 (344)
Q Consensus        76 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~L~ls~~~l~~~~~~~~  153 (344)
                      +..--.+++.|+.+.+.++.+...+.......|++++.|+|+.|-+....+  .-...+++|+.|+++.|.+.-......
T Consensus       113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            334446677788888888877654333455678888888888775543222  223467888888888887663332222


Q ss_pred             hhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhh
Q 019237          154 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLF  233 (344)
Q Consensus       154 l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  233 (344)
                      -..++.|+.|.++.|.++ ...+...+..+|+|+.|++..|......   ......++.|+.|++++|.+....-.. ..
T Consensus       193 ~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~---~~~~~i~~~L~~LdLs~N~li~~~~~~-~~  267 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIK---ATSTKILQTLQELDLSNNNLIDFDQGY-KV  267 (505)
T ss_pred             hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhccccccee---cchhhhhhHHhhccccCCccccccccc-cc
Confidence            335677888888888877 4444566778888888888877411111   112233477888888888773311112 23


Q ss_pred             hccCCccEEEccCCcCcC-CchHh-----hhcCCCCCEEEccCCccCCCcc--ccccCCCCCCEEeCCCCcCc
Q 019237          234 NLSRNILVLDLAFNSLRG-SIPEA-----FQHMVSLKSLHLTDNELEGGIP--KFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       234 ~~~~~L~~L~ls~n~l~~-~~~~~-----~~~~~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~  298 (344)
                      ..++.|+.|+++.+.+.. .+|+.     ...+++|+.|++..|++.. .+  ..+..+++|+.|.+..|.++
T Consensus       268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccc
Confidence            345577888888777764 22322     3456778888888888752 22  23555677777777777765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=9.4e-13  Score=118.74  Aligned_cols=195  Identities=25%  Similarity=0.321  Sum_probs=104.0

Q ss_pred             cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      .+..-...|++-|++..  +|..+..+..|+.+.+..|.+. .+|..++++..|.+|+++.|.+...+  ..+..++ |+
T Consensus        73 ~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp--~~lC~lp-Lk  146 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLP--DGLCDLP-LK  146 (722)
T ss_pred             cccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCC--hhhhcCc-ce
Confidence            34445555666666654  5555555555666666555443 34555666666666666666666554  2233333 55


Q ss_pred             EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237          162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV  241 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  241 (344)
                      .|-+++|++...+.   .++....|.+|+.+.|.+...+.    .+..+.+|+.|.+..|++  ..+++.+. .+ .|..
T Consensus       147 vli~sNNkl~~lp~---~ig~~~tl~~ld~s~nei~slps----ql~~l~slr~l~vrRn~l--~~lp~El~-~L-pLi~  215 (722)
T KOG0532|consen  147 VLIVSNNKLTSLPE---EIGLLPTLAHLDVSKNEIQSLPS----QLGYLTSLRDLNVRRNHL--EDLPEELC-SL-PLIR  215 (722)
T ss_pred             eEEEecCccccCCc---ccccchhHHHhhhhhhhhhhchH----HhhhHHHHHHHHHhhhhh--hhCCHHHh-CC-ceee
Confidence            55566665555443   34455556666666665555443    233335555666666655  34555444 22 4566


Q ss_pred             EEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCcccccc---CCCCCCEEeCCCC
Q 019237          242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFG---NMCSLNRLFLPHN  295 (344)
Q Consensus       242 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~L~~n  295 (344)
                      ||++.|+++ .+|-.|.+++.|++|-|.+|.++ ..|..++   ...-.++|+..-|
T Consensus       216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            666666665 56666666666666666666665 3333332   2334445555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=9.1e-11  Score=93.53  Aligned_cols=104  Identities=36%  Similarity=0.357  Sum_probs=29.9

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccc-ccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPF-QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      +..|+.|++++|.++..   +.+..+++|+.|++++|.+.... ..+ ..+++|++|++++|.+........+..+++|+
T Consensus        41 l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             -TT--EEE-TTS--S-----TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            34455555555555432   22334455555555544444321 112 23445555555555554444334444455555


Q ss_pred             EEEccccccCCCCchH-HHHhhcccCcEEE
Q 019237          162 HLDLSYINLTKSSDWF-QVVAKLRSLKTLV  190 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~  190 (344)
                      .|++.+|.+....... ..+..+|+|+.|+
T Consensus       117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             eeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            5555555444332211 1234444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.4e-11  Score=107.99  Aligned_cols=185  Identities=23%  Similarity=0.245  Sum_probs=129.0

Q ss_pred             CCCCCcEEEccCCcCCCcCC--cccccCCCCcEEEccCCCCCCCCc-hhhhhcCCCCCEEEccccccCCCCchHHHHhhc
Q 019237          107 SLSRLRYLNLSCGTSLLKVP--RPFQYLSGLVYLRLENSNLFSLGS-LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL  183 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~L~ls~~~l~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  183 (344)
                      ++.+|+.+.|.++... ..+  .....|++++.|||+.|-+..... ......+|+|+.|+++.|.+..... ...-..+
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhh
Confidence            4778888888865543 222  356678999999999987775443 3556678999999999998765532 1123467


Q ss_pred             ccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCch--HhhhcCC
Q 019237          184 RSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP--EAFQHMV  261 (344)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~~~  261 (344)
                      +.|+.|.++.|+++....  .+....+++|+.|++.+|...  .....-.+.++.|+.|||++|.+. .++  .....++
T Consensus       197 ~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~  271 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP  271 (505)
T ss_pred             hhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhccccc--ceecchhhhhhHHhhccccCCccc-cccccccccccc
Confidence            888999999998874322  334555689999999998431  222222344557899999998887 333  3456788


Q ss_pred             CCCEEEccCCccCC-Ccccc-----ccCCCCCCEEeCCCCcCc
Q 019237          262 SLKSLHLTDNELEG-GIPKF-----FGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       262 ~L~~L~l~~n~~~~-~~~~~-----l~~l~~L~~L~L~~n~l~  298 (344)
                      .|..|+++.|.+.+ ..|..     ....++|++|+++.|.+.
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            88999999888875 23333     345689999999999885

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=8.6e-11  Score=98.55  Aligned_cols=209  Identities=22%  Similarity=0.196  Sum_probs=126.5

Q ss_pred             ccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhh
Q 019237           75 TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWL  154 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l  154 (344)
                      .+|..+.-+++|..+.++.+.-..  +......-|.|+.+...+..... .| .+.-...+....-..-...+.+....+
T Consensus       205 ~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~  280 (490)
T KOG1259|consen  205 RLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSA  280 (490)
T ss_pred             ccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEec
Confidence            445555666777788887775433  22222234667777766433221 11 111111121111111111222222334


Q ss_pred             hcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhh
Q 019237          155 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN  234 (344)
Q Consensus       155 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  234 (344)
                      ..+..|.++|+++|.+.....   +..-.|.++.|+++.|++..+..     +..+++|+.||+++|.++  .+ ..+..
T Consensus       281 dTWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~n-----La~L~~L~~LDLS~N~Ls--~~-~Gwh~  349 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQN-----LAELPQLQLLDLSGNLLA--EC-VGWHL  349 (490)
T ss_pred             chHhhhhhccccccchhhhhh---hhhhccceeEEeccccceeeehh-----hhhcccceEeecccchhH--hh-hhhHh
Confidence            455678888888888776653   66777888888888888776443     455588888888888772  22 23333


Q ss_pred             ccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC-CccccccCCCCCCEEeCCCCcCccc
Q 019237          235 LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG-GIPKFFGNMCSLNRLFLPHNKLSGE  300 (344)
Q Consensus       235 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~  300 (344)
                      .+-+.+.|.++.|.+..  ...+..+-+|..||+.+|++.. .-...++++|.|+.+.|.+|.+.+.
T Consensus       350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            34478888888888752  2345667778888999998873 1234578889999999999988754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=1.4e-10  Score=92.46  Aligned_cols=103  Identities=23%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             cccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCC-chHhhhcCC
Q 019237          183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGS-IPEAFQHMV  261 (344)
Q Consensus       183 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~~  261 (344)
                      +.+|+.|++++|.+.....     +..++.|+.|++++|.+.  .+...+...+++|++|++++|+|... ....+..++
T Consensus        41 l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~  113 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP  113 (175)
T ss_dssp             -TT--EEE-TTS--S--TT---------TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred             hcCCCEEECCCCCCccccC-----ccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence            3444445555444444321     233345555555555552  22222222334555555555555421 123344455


Q ss_pred             CCCEEEccCCccCCCc---cccccCCCCCCEEeC
Q 019237          262 SLKSLHLTDNELEGGI---PKFFGNMCSLNRLFL  292 (344)
Q Consensus       262 ~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~L  292 (344)
                      +|+.|++.+|.++..-   ...+..+|+|+.||-
T Consensus       114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            5555555555554210   112344555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=3.4e-10  Score=103.92  Aligned_cols=197  Identities=28%  Similarity=0.438  Sum_probs=138.5

Q ss_pred             EEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCC-CCcEEEccCCCCCCCCchhhhhcCCCCCEEEcc
Q 019237           88 HLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS-GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS  166 (344)
Q Consensus        88 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~-~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~  166 (344)
                      .+++..+.+..  ....+..++.++.|++.++.+. .++....... +|+.|+++.|.+...+  ..+..+++|+.|+++
T Consensus        97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhh--hhhhccccccccccC
Confidence            46666666533  2233445677888888866554 4555555553 8888888888888664  457788889999998


Q ss_pred             ccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccC
Q 019237          167 YINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAF  246 (344)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~  246 (344)
                      .|.+...+.   .....+.|+.|++++|.+...+..    ......|+++.+++|.+  ...+..+ ....++..+.+..
T Consensus       172 ~N~l~~l~~---~~~~~~~L~~L~ls~N~i~~l~~~----~~~~~~L~~l~~~~N~~--~~~~~~~-~~~~~l~~l~l~~  241 (394)
T COG4886         172 FNDLSDLPK---LLSNLSNLNNLDLSGNKISDLPPE----IELLSALEELDLSNNSI--IELLSSL-SNLKNLSGLELSN  241 (394)
T ss_pred             Cchhhhhhh---hhhhhhhhhheeccCCccccCchh----hhhhhhhhhhhhcCCcc--eecchhh-hhcccccccccCC
Confidence            888887753   333778888889998888877652    12335688888888853  1333333 3334777778888


Q ss_pred             CcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237          247 NSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       247 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                      |++. .++..+..+++++.|++++|+++ .++. +....+++.|++++|.+....|
T Consensus       242 n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         242 NKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence            8877 44677778888999999999888 4444 7788899999999988775544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=5.3e-12  Score=105.51  Aligned_cols=180  Identities=22%  Similarity=0.151  Sum_probs=89.0

Q ss_pred             CcEEEccCCcCCC-cCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEE
Q 019237          111 LRYLNLSCGTSLL-KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL  189 (344)
Q Consensus       111 L~~L~Ls~~~~~~-~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L  189 (344)
                      |++|||++..+.. .+...+..|.+|+.|.+.++.+. .++...+++..+|+.|+++.+.--......-.+.++..|.+|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            6666666433321 11122344556666666666555 333355566666666666665433332233345666666666


Q ss_pred             EecCCCCCCCCCchhhccccCCcccEEEcCCCCC--CCCCCcchhhhccCCccEEEccCC-cCcCCchHhhhcCCCCCEE
Q 019237          190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL--PSSSVYPWLFNLSRNILVLDLAFN-SLRGSIPEAFQHMVSLKSL  266 (344)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~~~L~~L  266 (344)
                      ++++|.+...... ........+|+.|+++|+.-  .. .-..-+...+++|.+|||++| .++......|-.++.|++|
T Consensus       266 NlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             CchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            6666655433211 11111124566666665522  11 122233344556666666665 3343344445556666666


Q ss_pred             EccCCccCCCccc---cccCCCCCCEEeCCCC
Q 019237          267 HLTDNELEGGIPK---FFGNMCSLNRLFLPHN  295 (344)
Q Consensus       267 ~l~~n~~~~~~~~---~l~~l~~L~~L~L~~n  295 (344)
                      .++.|...  +|.   .+...|+|.+|++-++
T Consensus       344 SlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            66666422  222   2455566666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.04  E-value=9.2e-11  Score=96.97  Aligned_cols=244  Identities=18%  Similarity=0.166  Sum_probs=168.0

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCC--C-------ccccccCCCCCcEEEccCCcCC
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGS--P-------VPEFIGSLSRLRYLNLSCGTSL  122 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~-------~~~~l~~l~~L~~L~Ls~~~~~  122 (344)
                      ..++.+||+||.++.-...    .+...+.+-++|+..+++.-.....  .       +.+.+-+||+|+..+||+|.+.
T Consensus        30 d~~~evdLSGNtigtEA~e----~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          30 DELVEVDLSGNTIGTEAME----ELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             cceeEEeccCCcccHHHHH----HHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            5688999999966543322    3445566677888888876432211  0       2234557999999999999998


Q ss_pred             CcCCccc----ccCCCCcEEEccCCCCCCCCch------------hhhhcCCCCCEEEccccccCCCCc--hHHHHhhcc
Q 019237          123 LKVPRPF----QYLSGLVYLRLENSNLFSLGSL------------EWLSHLSSLRHLDLSYINLTKSSD--WFQVVAKLR  184 (344)
Q Consensus       123 ~~~~~~~----~~l~~L~~L~ls~~~l~~~~~~------------~~l~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~~  184 (344)
                      ...|..+    ..-..|++|.+++|.+.....-            .....-|.|+++....|++...+.  ....+.+..
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            8777655    4557899999999988754431            123345899999999999877643  234566667


Q ss_pred             cCcEEEecCCCCCCCCCch--hhccccCCcccEEEcCCCCCC--CCCCcchhhhccCCccEEEccCCcCcCCchHhh---
Q 019237          185 SLKTLVLRSCALPPINPSF--IWHFNLSTSIETLDLSDNNLP--SSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF---  257 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---  257 (344)
                      .|+++.+..|++.......  ...+..+++|+.||++.|.++  ++.........++.|..|.+.+|.++......+   
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            9999999999887653221  122344589999999999884  222333344555578999999998875433322   


Q ss_pred             ---hcCCCCCEEEccCCccCCCcc------ccc-cCCCCCCEEeCCCCcCcc
Q 019237          258 ---QHMVSLKSLHLTDNELEGGIP------KFF-GNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       258 ---~~~~~L~~L~l~~n~~~~~~~------~~l-~~l~~L~~L~L~~n~l~~  299 (344)
                         ...++|..|...+|.+.+.+-      ... .++|-|..|.+.+|.+..
T Consensus       266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence               346889999999998765322      111 357888899999998873

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.2e-11  Score=103.38  Aligned_cols=187  Identities=23%  Similarity=0.177  Sum_probs=134.4

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCC-CCCCCchhhhhcCCCCCEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN-LFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~-l~~~~~~~~l~~~~~L~~L  163 (344)
                      .|+++|++...++...+...+..+.+|+.|.+.++.+...+...++.-.+|+.|+++.|+ ++.......+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588999999988776566677889999999999999888887888888999999999875 4444443557789999999


Q ss_pred             EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEE
Q 019237          164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLD  243 (344)
Q Consensus       164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  243 (344)
                      ++++|.......-...-.--++|..|+++++.-.-......-....+++|.+||++.|......+...+++. +.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc-chheeee
Confidence            999998776532111223456899999988753221111122345678999999999865432444445444 4899999


Q ss_pred             ccCCcCcCCchHh---hhcCCCCCEEEccCCccC
Q 019237          244 LAFNSLRGSIPEA---FQHMVSLKSLHLTDNELE  274 (344)
Q Consensus       244 ls~n~l~~~~~~~---~~~~~~L~~L~l~~n~~~  274 (344)
                      ++.|..  .+|..   +...+.|..|++.++--.
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence            999864  34543   456788999998877543

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=1.4e-09  Score=104.99  Aligned_cols=110  Identities=28%  Similarity=0.334  Sum_probs=93.1

Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      .++.|++++|.+.+ .++..+. .+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g-~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRG-FIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccc-cCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            47889999999966 6666554 456999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCccccchHHhhccC-----ccccccccccccc
Q 019237          292 LPHNKLSGELSEMIQNLSG-----GCTMNSLEGVLEI  323 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~l~~-----~l~~n~l~~~~~~  323 (344)
                      |++|.+++.+|..+.....     ++.+|......|.
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            9999999999998876432     6777775444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=1.3e-11  Score=111.48  Aligned_cols=202  Identities=25%  Similarity=0.289  Sum_probs=143.2

Q ss_pred             EEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccc
Q 019237           88 HLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSY  167 (344)
Q Consensus        88 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~  167 (344)
                      .|.|++-.+...+.+..-..+.--...+++.|++. .+|..++.+..|+.+.+..|.+...+  ..+..+..|..++++.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip--~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIP--EAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecc--hhhhhhhHHHHhhhcc
Confidence            34455554444323332234555566777777765 56777777788888888888877665  6678888888888888


Q ss_pred             cccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCC
Q 019237          168 INLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN  247 (344)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n  247 (344)
                      |+++..+.   .+..+ -|+.|-+++|+++..+.++    +...+|..|+.+.|.+  .++++.+.... +|+.|.+..|
T Consensus       131 NqlS~lp~---~lC~l-pLkvli~sNNkl~~lp~~i----g~~~tl~~ld~s~nei--~slpsql~~l~-slr~l~vrRn  199 (722)
T KOG0532|consen  131 NQLSHLPD---GLCDL-PLKVLIVSNNKLTSLPEEI----GLLPTLAHLDVSKNEI--QSLPSQLGYLT-SLRDLNVRRN  199 (722)
T ss_pred             chhhcCCh---hhhcC-cceeEEEecCccccCCccc----ccchhHHHhhhhhhhh--hhchHHhhhHH-HHHHHHHhhh
Confidence            88877653   33444 4788888888887776542    2447888888888888  45666665544 7888888888


Q ss_pred             cCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhh
Q 019237          248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQN  307 (344)
Q Consensus       248 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  307 (344)
                      .+. .+|..+..+ .|.+||+++|++. .+|..|..|..|++|-|.+|.+. +.|..+|.
T Consensus       200 ~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~  255 (722)
T KOG0532|consen  200 HLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE  255 (722)
T ss_pred             hhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence            888 666666655 4888888888888 78888888888888888888888 44555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.93  E-value=1.5e-09  Score=99.79  Aligned_cols=185  Identities=31%  Similarity=0.444  Sum_probs=139.8

Q ss_pred             hhhhcCCCCCEEeCCCCCCCCCCccccccCCC-CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhc
Q 019237           78 PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLS-RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSH  156 (344)
Q Consensus        78 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~  156 (344)
                      ..+..++.++.|++.++.++.  ++.....+. +|+.|++++|.+.. +|..+..+++|+.|+++.|.+...+  .....
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~  184 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLP--KLLSN  184 (394)
T ss_pred             hhhhcccceeEEecCCccccc--Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhh--hhhhh
Confidence            345566789999999999987  677777674 99999999877654 4456788999999999999999766  33448


Q ss_pred             CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhcc
Q 019237          157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS  236 (344)
Q Consensus       157 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  236 (344)
                      .++|+.|++++|.+...+.   .......|+++.+++|.......    .......+..+.+..|.+..  + ......+
T Consensus       185 ~~~L~~L~ls~N~i~~l~~---~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~--~-~~~~~~l  254 (394)
T COG4886         185 LSNLNNLDLSGNKISDLPP---EIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLED--L-PESIGNL  254 (394)
T ss_pred             hhhhhheeccCCccccCch---hhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeee--c-cchhccc
Confidence            8999999999999988864   33456669999999995333322    34455777788888887732  2 3334455


Q ss_pred             CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccc
Q 019237          237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPK  279 (344)
Q Consensus       237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  279 (344)
                      ++++.|++++|.++ .++. +....+++.|++++|.+....+.
T Consensus       255 ~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         255 SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            57999999999998 4444 78889999999999988754443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=3e-09  Score=89.30  Aligned_cols=207  Identities=17%  Similarity=0.114  Sum_probs=138.7

Q ss_pred             cCCCCcEEEccCCCCCCCCchhhhh-cCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcccc
Q 019237          131 YLSGLVYLRLENSNLFSLGSLEWLS-HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL  209 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  209 (344)
                      ....++.+.+.++.+........++ ..+.+++++|.+|.+++...+...+..+|.|+.|+++.|.+........   ..
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p  119 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LP  119 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cc
Confidence            3445667777777777665544444 4678999999999999988888888999999999999998877654321   23


Q ss_pred             CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCc----------h-------------------HhhhcC
Q 019237          210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI----------P-------------------EAFQHM  260 (344)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~----------~-------------------~~~~~~  260 (344)
                      ..+|+.|.+.+..+.. +.........|.++.|+++.|.+....          +                   ...+-+
T Consensus       120 ~~nl~~lVLNgT~L~w-~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F  198 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSW-TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF  198 (418)
T ss_pred             ccceEEEEEcCCCCCh-hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence            3788899998888865 333445566678888888888544200          0                   011235


Q ss_pred             CCCCEEEccCCccCCCc-cccccCCCCCCEEeCCCCcCccc-cchHHhhccC----cccccccccccccccccccccccC
Q 019237          261 VSLKSLHLTDNELEGGI-PKFFGNMCSLNRLFLPHNKLSGE-LSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSM  334 (344)
Q Consensus       261 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l  334 (344)
                      +++..+.+..|.+.+.- -+....+|.+..|+|+.+.+..- ..+.+.++++    ++++|++...+..-..--..+.++
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            67777777777665422 12345567777888888877632 1244555555    788888877776655555566778


Q ss_pred             CCCcceE
Q 019237          335 RPLDWIA  341 (344)
Q Consensus       335 ~~L~~l~  341 (344)
                      +++++|+
T Consensus       279 ~~v~vLN  285 (418)
T KOG2982|consen  279 TKVQVLN  285 (418)
T ss_pred             cceEEec
Confidence            8877775

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.85  E-value=1.9e-09  Score=106.58  Aligned_cols=110  Identities=33%  Similarity=0.376  Sum_probs=62.0

Q ss_pred             hhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCC
Q 019237           79 ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLS  158 (344)
Q Consensus        79 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~  158 (344)
                      .|..++.|++||+++|.-... +|..++.+-+|++|++++..+. .+|..+.++..|.+|++..+...... +.....++
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~  642 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQ  642 (889)
T ss_pred             HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcc
Confidence            355567777777776544443 6666777777777777654433 66666677777777777666543222 23344566


Q ss_pred             CCCEEEccccccCCCCchHHHHhhcccCcEEEe
Q 019237          159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL  191 (344)
Q Consensus       159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l  191 (344)
                      +|++|.+..............+..+.+|+.+..
T Consensus       643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            777776665543322222233444444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=1.8e-09  Score=70.84  Aligned_cols=61  Identities=34%  Similarity=0.500  Sum_probs=49.9

Q ss_pred             CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcC
Q 019237          237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL  297 (344)
Q Consensus       237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l  297 (344)
                      ++|++|++++|+++...+.+|..+++|++|++++|.++...+..|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688888888888855567888888899999998888866667788889999999988864

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=6.5e-10  Score=93.37  Aligned_cols=131  Identities=24%  Similarity=0.224  Sum_probs=82.7

Q ss_pred             CCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237          108 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK  187 (344)
Q Consensus       108 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~  187 (344)
                      -+.|+.+|+++|.+. .+.++..-.+.++.|++|+|.+..+..   ++.+++|+.||+++|.+.....   --..+-+++
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~G---wh~KLGNIK  355 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVG---WHLKLGNIK  355 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhh---hHhhhcCEe
Confidence            355777777766543 445555666777777777777775542   6777777777777777665432   113455677


Q ss_pred             EEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC
Q 019237          188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG  251 (344)
Q Consensus       188 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~  251 (344)
                      .|.++.|.+....     .+..+.+|..||+++|++....-...+. .+|+|+++.+.+|.+.+
T Consensus       356 tL~La~N~iE~LS-----GL~KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIETLS-----GLRKLYSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHhhhh-----hhHhhhhheeccccccchhhHHHhcccc-cccHHHHHhhcCCCccc
Confidence            7777777765532     3455567778888888774322222333 34578888888887773

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.67  E-value=2.1e-08  Score=83.32  Aligned_cols=37  Identities=35%  Similarity=0.519  Sum_probs=22.0

Q ss_pred             hhcCCCCCEEeCCCCCCCCCCccc----cccCCCCCcEEEcc
Q 019237           80 LLKLHDLRHLDLSNNHFGGSPVPE----FIGSLSRLRYLNLS  117 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~~~~~~----~l~~l~~L~~L~Ls  117 (344)
                      +..+..++.+++++|.|... -..    .+.+-.+|+..+++
T Consensus        26 l~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfs   66 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFS   66 (388)
T ss_pred             HHhhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehh
Confidence            44467777788888877654 222    23334556666665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.67  E-value=3.8e-08  Score=97.49  Aligned_cols=105  Identities=30%  Similarity=0.389  Sum_probs=81.4

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ  130 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  130 (344)
                      .+.+++|||++|        .--+.+|..++++-+|++|++++..+..  +|..++++.+|.+|++..+.....+|....
T Consensus       570 m~~LrVLDLs~~--------~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~  639 (889)
T KOG4658|consen  570 LPLLRVLDLSGN--------SSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPGILL  639 (889)
T ss_pred             CcceEEEECCCC--------CccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccccchhh
Confidence            467888899886        4456899999999999999999999985  999999999999999998777666677777


Q ss_pred             cCCCCcEEEccCCCCCCCC-chhhhhcCCCCCEEEc
Q 019237          131 YLSGLVYLRLENSNLFSLG-SLEWLSHLSSLRHLDL  165 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~-~~~~l~~~~~L~~L~l  165 (344)
                      .+.+|++|.+......... ....+..+.+|+.+..
T Consensus       640 ~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  640 ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            7999999999887633211 1233444555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=3.3e-09  Score=89.00  Aligned_cols=209  Identities=18%  Similarity=0.154  Sum_probs=111.4

Q ss_pred             CCCCCEEeCCCCCCCCCC-ccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           83 LHDLRHLDLSNNHFGGSP-VPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        83 l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      .+.++.+|+.+|.|.... +...+..+|.|+.|+|++|++...+...=....+|++|.|.++.+........+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            456777777777775431 2233456777788888777655433221123457777777777766555545566677777


Q ss_pred             EEEccccccCCCCchHHHHhh-cccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCcc
Q 019237          162 HLDLSYINLTKSSDWFQVVAK-LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL  240 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  240 (344)
                      +|+++.|.......-....+. .+.+.+|++..|...-... .......++++..+-+..|.+...+-.. -+...+.+.
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~-~~~l~r~Fpnv~sv~v~e~PlK~~s~ek-~se~~p~~~  227 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN-KNKLSRIFPNVNSVFVCEGPLKTESSEK-GSEPFPSLS  227 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHH-HHhHHhhcccchheeeecCcccchhhcc-cCCCCCcch
Confidence            777777743332100011111 2244455554443221100 0011223366666667677663311111 122233555


Q ss_pred             EEEccCCcCcC-CchHhhhcCCCCCEEEccCCccCCCcc------ccccCCCCCCEEeCC
Q 019237          241 VLDLAFNSLRG-SIPEAFQHMVSLKSLHLTDNELEGGIP------KFFGNMCSLNRLFLP  293 (344)
Q Consensus       241 ~L~ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~------~~l~~l~~L~~L~L~  293 (344)
                      -|+|+.++|.. .-.+.+..++.|+.|.++++.+.+.+.      -.++++++++.|+=+
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            67777777653 224556677777777888777654221      124667777776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=3.3e-09  Score=97.85  Aligned_cols=128  Identities=27%  Similarity=0.292  Sum_probs=61.9

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237           83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH  162 (344)
Q Consensus        83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~  162 (344)
                      +..++.+.++.|.+..  +...+..+.+|+.+++.+|.+..... .+..+.+|++|++++|.|.....   +..++.|+.
T Consensus        71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~  144 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKE  144 (414)
T ss_pred             hHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc---hhhccchhh
Confidence            3344444455555433  22334445555555555554443221 13445555666666665554432   344444555


Q ss_pred             EEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237          163 LDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL  223 (344)
Q Consensus       163 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  223 (344)
                      |++.+|.+.....    +..++.|+.+++++|.+......  . ...+.+++.+.+.+|.+
T Consensus       145 L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  145 LNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSI  198 (414)
T ss_pred             heeccCcchhccC----CccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCch
Confidence            6666665555432    23355555555555555443321  0 13335555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.61  E-value=2.2e-08  Score=65.63  Aligned_cols=61  Identities=38%  Similarity=0.580  Sum_probs=47.2

Q ss_pred             CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCcc
Q 019237          211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNEL  273 (344)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~  273 (344)
                      ++|++|++++|.+  ..+++..+..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3677888888877  456666777777888888888888866677888888888888888864

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=2.4e-09  Score=99.81  Aligned_cols=151  Identities=26%  Similarity=0.268  Sum_probs=107.6

Q ss_pred             HHHHHHhHhhccccCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEE
Q 019237           10 REALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHL   89 (344)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L   89 (344)
                      .+||+.+.++++......+.|++                     +...++++|        .+. .+..++.-++.|+.|
T Consensus       143 l~Al~~v~ascggd~~ns~~Wn~---------------------L~~a~fsyN--------~L~-~mD~SLqll~ale~L  192 (1096)
T KOG1859|consen  143 LDALRHVFASCGGDISNSPVWNK---------------------LATASFSYN--------RLV-LMDESLQLLPALESL  192 (1096)
T ss_pred             HHHHHHHHHHhccccccchhhhh---------------------Hhhhhcchh--------hHH-hHHHHHHHHHHhhhh
Confidence            46777777777544455567763                     444455555        332 234456667788999


Q ss_pred             eCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccc
Q 019237           90 DLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN  169 (344)
Q Consensus        90 ~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~  169 (344)
                      +|++|.++..   ..+.++++|++|||++|.+....--....+. |+.|++++|.+++..   .+.++.+|+.||++.|-
T Consensus       193 nLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~---gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  193 NLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR---GIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             ccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh---hHHhhhhhhccchhHhh
Confidence            9999988763   3778899999999998877643333333444 899999999888663   47788889999999998


Q ss_pred             cCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237          170 LTKSSDWFQVVAKLRSLKTLVLRSCALPP  198 (344)
Q Consensus       170 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  198 (344)
                      +.+... ...+..+..|+.|+|.+|.+.-
T Consensus       266 l~~hse-L~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  266 LSEHSE-LEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhcchh-hhHHHHHHHHHHHhhcCCcccc
Confidence            888755 2467778889999999987643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.56  E-value=4.2e-09  Score=92.21  Aligned_cols=237  Identities=19%  Similarity=0.109  Sum_probs=120.3

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCC-CCCCccccccCCCCCcEEEccCCcCCCcCC-c-c
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHF-GGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-R-P  128 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~-~-~  128 (344)
                      ++++.+.+.|..-...      ..+-....+++++++|.+.++.. +.......-..+++|++|++..|...+... . .
T Consensus       138 g~lk~LSlrG~r~v~~------sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l  211 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGD------SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL  211 (483)
T ss_pred             cccccccccccccCCc------chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence            6778888887631110      12223446778888888888753 332222333457888888888765543221 1 1


Q ss_pred             cccCCCCcEEEccCCCCCCCC-chhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcc
Q 019237          129 FQYLSGLVYLRLENSNLFSLG-SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHF  207 (344)
Q Consensus       129 ~~~l~~L~~L~ls~~~l~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  207 (344)
                      ...+++|++|++++|.-.+.. +......+..++.+.+.+|.-.....+...-..+..+..+++..|....... .....
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~i~  290 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-LWLIA  290 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-HHHHh
Confidence            235788888888888644332 2233444555666666655444333322233334445555544442211111 12223


Q ss_pred             ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCc-CcCCchH-hhhcCCCCCEEEccCCccCC--CccccccC
Q 019237          208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS-LRGSIPE-AFQHMVSLKSLHLTDNELEG--GIPKFFGN  283 (344)
Q Consensus       208 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~-~~~~~~~L~~L~l~~n~~~~--~~~~~l~~  283 (344)
                      ..+..|+.++.+++...+..+...+.....+|+.|-++.|+ |++.-.. .-.+++.|+.+++.++....  .+...-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            34466666666665443334444555555666666666664 3321111 11334555555555553321  11122234


Q ss_pred             CCCCCEEeCCCC
Q 019237          284 MCSLNRLFLPHN  295 (344)
Q Consensus       284 l~~L~~L~L~~n  295 (344)
                      ++.|+++.+++|
T Consensus       371 C~~lr~lslshc  382 (483)
T KOG4341|consen  371 CPRLRVLSLSHC  382 (483)
T ss_pred             CchhccCChhhh
Confidence            455555555555

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.50  E-value=1.6e-08  Score=93.29  Aligned_cols=180  Identities=27%  Similarity=0.338  Sum_probs=111.7

Q ss_pred             chhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhc
Q 019237           77 SPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSH  156 (344)
Q Consensus        77 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~  156 (344)
                      -..+..+++|+.+++..|.+..  +...+..+++|++|++++|.+...-+  +..+..|+.|++++|.+.....   +..
T Consensus        88 ~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~---~~~  160 (414)
T KOG0531|consen   88 LNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG---LES  160 (414)
T ss_pred             hcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC---Ccc
Confidence            3446777888888999888876  44446778889999999887765433  4556678888999988886654   445


Q ss_pred             CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhcc
Q 019237          157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS  236 (344)
Q Consensus       157 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  236 (344)
                      +++|+.+++++|.+...... . ...+..++.+.+.+|.+.....     ......+..+++..|.+..  +- .+....
T Consensus       161 l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~-----~~~~~~l~~~~l~~n~i~~--~~-~l~~~~  230 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG-----LDLLKKLVLLSLLDNKISK--LE-GLNELV  230 (414)
T ss_pred             chhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc-----hHHHHHHHHhhccccccee--cc-Ccccch
Confidence            88888888888887766421 1 4777788888888887665432     1222333444555555521  11 100000


Q ss_pred             -CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccC
Q 019237          237 -RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELE  274 (344)
Q Consensus       237 -~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  274 (344)
                       ..|+.+++++|.+. ..+..+..+..+..|++..|++.
T Consensus       231 ~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  231 MLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             hHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence             02556666666655 33344444555566666655554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.50  E-value=1.9e-07  Score=56.18  Aligned_cols=40  Identities=50%  Similarity=1.021  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhHhhcc-ccCCCCCCCCCCCC-CCCCccccceEEc
Q 019237            7 DEEREALLTFKQSMV-DKYGVLSSWGRDND-KRDCCKWRGVRCS   48 (344)
Q Consensus         7 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~-~~~~c~~~~~~c~   48 (344)
                      +.|++||++|+.++. +|.....+|+.  . ..++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            679999999999996 57788899994  2 2799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=1.4e-08  Score=94.90  Aligned_cols=127  Identities=26%  Similarity=0.313  Sum_probs=65.5

Q ss_pred             CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237          159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN  238 (344)
Q Consensus       159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  238 (344)
                      .|.+.+.+.|.+....   .++.-++.++.|+|++|+++...     .+..++.|++||++.|.+  ..+ +.+...-..
T Consensus       165 ~L~~a~fsyN~L~~mD---~SLqll~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsyN~L--~~v-p~l~~~gc~  233 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMD---ESLQLLPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSYNCL--RHV-PQLSMVGCK  233 (1096)
T ss_pred             hHhhhhcchhhHHhHH---HHHHHHHHhhhhccchhhhhhhH-----HHHhcccccccccccchh--ccc-cccchhhhh
Confidence            4455555555544332   24555666666666666665532     244456666666666666  122 222222224


Q ss_pred             ccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCC-ccccccCCCCCCEEeCCCCcCc
Q 019237          239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG-IPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       239 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      |..|.+++|.++ .+ ..+.++++|+.||+++|-+.+. -...+..+..|+.|.|.+|.+-
T Consensus       234 L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            666666666654 21 2234556666666666655531 1112334556666666666553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.27  E-value=1e-07  Score=71.13  Aligned_cols=132  Identities=24%  Similarity=0.274  Sum_probs=86.1

Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      .+..++++.|.+-..... .........|+..++++|.+  ..+++.+....+.++.|++++|.++ .+|..+..++.|+
T Consensus        28 E~h~ldLssc~lm~i~da-vy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADA-VYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HhhhcccccchhhHHHHH-HHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            445556666654433221 11222336777778888877  5667776666667888888888888 7777788888888


Q ss_pred             EEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccc
Q 019237          265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLE  322 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~  322 (344)
                      .|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+..-..    .+.++.+++.-+
T Consensus       104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            8888888887 66666666788888888888776 44444222111    566666665444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.12  E-value=2.1e-07  Score=69.57  Aligned_cols=136  Identities=22%  Similarity=0.214  Sum_probs=85.4

Q ss_pred             CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237          159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN  238 (344)
Q Consensus       159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  238 (344)
                      .+..++|+.|.+.........+.....|...++++|.+...+..+   ...++.++.|++++|.+  ..+|.. ...++.
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf---t~kf~t~t~lNl~~nei--sdvPeE-~Aam~a  101 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF---TIKFPTATTLNLANNEI--SDVPEE-LAAMPA  101 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH---hhccchhhhhhcchhhh--hhchHH-HhhhHH
Confidence            456667777766665554455666667777788888777766532   23335777888888887  456665 444557


Q ss_pred             ccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237          239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       239 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                      |+.|+++.|.+. ..|..+..+.++..|+..+|... .++-.+..-...-..++.++.+.+.-+
T Consensus       102 Lr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  102 LRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             hhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            888888888887 66666666777788888888766 444433222222333445555554443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=4.7e-06  Score=50.18  Aligned_cols=36  Identities=31%  Similarity=0.545  Sum_probs=21.5

Q ss_pred             CCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237          262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       262 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      +|++|++++|+++ .+|..+.++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 45555666666666666666666

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.05  E-value=3.3e-06  Score=81.90  Aligned_cols=138  Identities=20%  Similarity=0.241  Sum_probs=86.2

Q ss_pred             CCCCEEeCCCCCCCCCCcccccc-CCCCCcEEEccCCcCCCc-CCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           84 HDLRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLK-VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      .+|+.|++++...-...-+..++ .+|.|+.|.+++-.+... +.....++++|..||+|+++++..   ..++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            57788888776543222333333 478888888876554332 223334677888888888887755   4567778888


Q ss_pred             EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCC---chhhccccCCcccEEEcCCCCCCC
Q 019237          162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP---SFIWHFNLSTSIETLDLSDNNLPS  225 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~  225 (344)
                      .|.+.+-.+..... ...+..+++|++|++++........   .+......++.|+.||.+++.+..
T Consensus       199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            88777776665443 2456678888888887765544331   111222335788888888877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=3.1e-06  Score=82.08  Aligned_cols=41  Identities=24%  Similarity=0.350  Sum_probs=16.7

Q ss_pred             CCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237          157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP  198 (344)
Q Consensus       157 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  198 (344)
                      +|.|++|.+++-.+.... |.....++++|..|+++++++..
T Consensus       147 LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~n  187 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISN  187 (699)
T ss_pred             CcccceEEecCceecchh-HHHHhhccCccceeecCCCCccC
Confidence            344444444443332221 23334444444444444444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.00  E-value=5.8e-06  Score=66.03  Aligned_cols=106  Identities=26%  Similarity=0.297  Sum_probs=64.9

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      ....+||+.|++...   ..|..++.|.+|.+.+|.+...-|.--.-+++|+.|.+.+|++........+..+|+|++|.
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            456677777776432   34556677777777777766555544444566777777777777666556666777777777


Q ss_pred             ccccccCCCCchH-HHHhhcccCcEEEecC
Q 019237          165 LSYINLTKSSDWF-QVVAKLRSLKTLVLRS  193 (344)
Q Consensus       165 l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~  193 (344)
                      +-+|.+....... ..+..+|+|+.|++.+
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7777665542211 1234455555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.94  E-value=2.1e-05  Score=62.92  Aligned_cols=129  Identities=19%  Similarity=0.217  Sum_probs=72.4

Q ss_pred             CCEEeCCCCCCCCCCcccccc-CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           86 LRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      =+.+++++..+...  .. ++ -......++|++|.+...  ..|..+++|.+|.+.+|.|+.+.. ..-..+++|+.|.
T Consensus        21 e~e~~LR~lkip~i--en-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI--EN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLI   94 (233)
T ss_pred             ccccccccccccch--hh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEE
Confidence            35566666655432  11 22 234566677776665432  234566777777777777775542 2223456677777


Q ss_pred             ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCC
Q 019237          165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDN  221 (344)
Q Consensus       165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  221 (344)
                      +.+|.+....+ ...+..++.|+.|.+-+|.+.....=-......+++|+.||+++-
T Consensus        95 LtnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   95 LTNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77777666543 235666777777777777665433211122334466666666553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=1.4e-05  Score=48.09  Aligned_cols=37  Identities=27%  Similarity=0.573  Sum_probs=30.4

Q ss_pred             CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccC
Q 019237          237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELE  274 (344)
Q Consensus       237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  274 (344)
                      ++|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            37889999999998 67777889999999999999888

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.90  E-value=7.4e-06  Score=68.09  Aligned_cols=118  Identities=24%  Similarity=0.199  Sum_probs=78.7

Q ss_pred             cccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCC--cCCCcCCcccccCCCCcEEEccCCCCCCCCch
Q 019237           74 GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLRLENSNLFSLGSL  151 (344)
Q Consensus        74 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~--~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~  151 (344)
                      |.+..-.-.+..|+.+.+.+..++..   ..+..+++|++|.++.|  +..+.++.....+++|+++++++|.+..+...
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            34555455566677777777766542   23456788999999988  55555555556678899999999988865555


Q ss_pred             hhhhcCCCCCEEEccccccCCCCchH-HHHhhcccCcEEEecCC
Q 019237          152 EWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLVLRSC  194 (344)
Q Consensus       152 ~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~  194 (344)
                      ..+..+.+|..|++.+|......... ..+.-+++|+.|+-...
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            66777788888888888776653322 23445566666654433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=0.00011  Score=66.13  Aligned_cols=139  Identities=17%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCC-CCCCCCchhhhhcCC
Q 019237           80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS-NLFSLGSLEWLSHLS  158 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~-~l~~~~~~~~l~~~~  158 (344)
                      +..+.+++.|++++|.++.  +|. +  .++|+.|.+++|.....+|..+.  .+|++|.+++| .+...        ..
T Consensus        48 ~~~~~~l~~L~Is~c~L~s--LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL--------P~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES--LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL--------PE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc--cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc--------cc
Confidence            4445667777777776655  331 1  23577777776665555555442  46777777776 33211        23


Q ss_pred             CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237          159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN  238 (344)
Q Consensus       159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  238 (344)
                      +|++|++..+.......++      ++|+.|.+..+.......  . ....+.+|++|++++|...  ..+..   .+.+
T Consensus       113 sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~--l-p~~LPsSLk~L~Is~c~~i--~LP~~---LP~S  178 (426)
T PRK15386        113 SVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQAR--I-DNLISPSLKTLSLTGCSNI--ILPEK---LPES  178 (426)
T ss_pred             ccceEEeCCCCCcccccCc------chHhheeccccccccccc--c-ccccCCcccEEEecCCCcc--cCccc---cccc
Confidence            4666666554433222111      234555553322100000  0 0012256777777766541  22221   2236


Q ss_pred             ccEEEccCC
Q 019237          239 ILVLDLAFN  247 (344)
Q Consensus       239 L~~L~ls~n  247 (344)
                      |+.|+++.+
T Consensus       179 Lk~L~ls~n  187 (426)
T PRK15386        179 LQSITLHIE  187 (426)
T ss_pred             CcEEEeccc
Confidence            777777654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.84  E-value=1e-06  Score=77.59  Aligned_cols=237  Identities=19%  Similarity=0.154  Sum_probs=111.3

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhh-hcCCCCCEEeCCCCC-CCCCCccc-cccCCCCCcEEEccCCcCCCc--CC
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPAL-LKLHDLRHLDLSNNH-FGGSPVPE-FIGSLSRLRYLNLSCGTSLLK--VP  126 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~-~l~~l~~L~~L~Ls~~~~~~~--~~  126 (344)
                      +.++.+++.++.       .++...-.++ .++++|+++++..|. ++.. ... ....+++|++|++++|.-+..  +.
T Consensus       164 pnIehL~l~gc~-------~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC~kL~~lNlSwc~qi~~~gv~  235 (483)
T KOG4341|consen  164 PNIEHLALYGCK-------KITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGCRKLKYLNLSWCPQISGNGVQ  235 (483)
T ss_pred             Cchhhhhhhcce-------eccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhhhhHHHhhhccCchhhcCcch
Confidence            567777776663       3443322233 567899999998854 4443 233 334689999999998865432  11


Q ss_pred             cccccCCCCcEEEccCCCCCCCCch-hhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhh
Q 019237          127 RPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIW  205 (344)
Q Consensus       127 ~~~~~l~~L~~L~ls~~~l~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  205 (344)
                      ....++..++.+.+.+|.-.+.... ..-+.+.-+.++++..|.......+...-..+..|+.|..+++...+... ...
T Consensus       236 ~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~-l~a  314 (483)
T KOG4341|consen  236 ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV-LWA  314 (483)
T ss_pred             HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH-HHH
Confidence            2223455566666665532222211 11122344445554444333333233333445555555555544322111 011


Q ss_pred             ccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCc-C-CchHhhhcCCCCCEEEccCCccCCCc-----c
Q 019237          206 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR-G-SIPEAFQHMVSLKSLHLTDNELEGGI-----P  278 (344)
Q Consensus       206 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~-~-~~~~~~~~~~~L~~L~l~~n~~~~~~-----~  278 (344)
                      ....+.+|+.+-+.+++.-...-...+...++.|+.+++..+... + .+...-.+++.|+.|.+++|......     .
T Consensus       315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~  394 (483)
T KOG4341|consen  315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS  394 (483)
T ss_pred             HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence            122335555555555532111222333444445555555554322 1 12222234555555555555322111     1


Q ss_pred             ccccCCCCCCEEeCCCCcC
Q 019237          279 KFFGNMCSLNRLFLPHNKL  297 (344)
Q Consensus       279 ~~l~~l~~L~~L~L~~n~l  297 (344)
                      ..-+.+..|..+.|+++..
T Consensus       395 ~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  395 SSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             hccccccccceeeecCCCC
Confidence            1123344555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=0.00034  Score=63.18  Aligned_cols=138  Identities=20%  Similarity=0.210  Sum_probs=82.6

Q ss_pred             ccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCC-CCCCchhhhhcCCCCCEEEcccc-ccCCCCchHHHHhh
Q 019237          105 IGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL-FSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAK  182 (344)
Q Consensus       105 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~  182 (344)
                      +..+.++++|++++|.+ ..+|.   -..+|++|.+++|.- +..+  ..+  .++|++|.+++| .+...         
T Consensus        48 ~~~~~~l~~L~Is~c~L-~sLP~---LP~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sL---------  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDI-ESLPV---LPNELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGL---------  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCC-cccCC---CCCCCcEEEccCCCCcccCC--chh--hhhhhheEccCccccccc---------
Confidence            44578899999998844 44452   124699999988643 3333  222  358999999988 33222         


Q ss_pred             cccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC-CCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCC
Q 019237          183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL-PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV  261 (344)
Q Consensus       183 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~  261 (344)
                      .+.|+.|++..+......       ..+.+|+.|.+.++.. .....+   ...+++|+.|++++|... ..|..+.  .
T Consensus       111 P~sLe~L~L~~n~~~~L~-------~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~  177 (426)
T PRK15386        111 PESVRSLEIKGSATDSIK-------NVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--E  177 (426)
T ss_pred             ccccceEEeCCCCCcccc-------cCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--c
Confidence            235777777655433211       1235777887754321 110111   123357999999988866 4444333  5


Q ss_pred             CCCEEEccCCc
Q 019237          262 SLKSLHLTDNE  272 (344)
Q Consensus       262 ~L~~L~l~~n~  272 (344)
                      +|+.|.++.+.
T Consensus       178 SLk~L~ls~n~  188 (426)
T PRK15386        178 SLQSITLHIEQ  188 (426)
T ss_pred             cCcEEEecccc
Confidence            78889887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.46  E-value=3.6e-05  Score=72.56  Aligned_cols=115  Identities=20%  Similarity=0.189  Sum_probs=66.4

Q ss_pred             cCCCCCEEeCCCCC-CCCCCccccccCCCCCcEEEccCC-cCCCcCC----cccccCCCCcEEEccCCC-CCCCCchhhh
Q 019237           82 KLHDLRHLDLSNNH-FGGSPVPEFIGSLSRLRYLNLSCG-TSLLKVP----RPFQYLSGLVYLRLENSN-LFSLGSLEWL  154 (344)
Q Consensus        82 ~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~Ls~~-~~~~~~~----~~~~~l~~L~~L~ls~~~-l~~~~~~~~l  154 (344)
                      .++.|+.+.+..+. ++...+......+++|+.|+++.+ ......+    .....+.+|+.|+++++. ++.... ..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence            35777777777663 332223344456777888887752 2222111    122345777888888777 443333 333


Q ss_pred             h-cCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCC
Q 019237          155 S-HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP  197 (344)
Q Consensus       155 ~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  197 (344)
                      . .+++|++|.+..|.-.....+......++.|++|++++|...
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            3 367788887766663222334455667777888888776543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.38  E-value=8.2e-05  Score=70.11  Aligned_cols=189  Identities=23%  Similarity=0.153  Sum_probs=100.8

Q ss_pred             CCCCCcEEEccCCcCCCc--CCcccccCCCCcEEEccCC-CCCCC-C--chhhhhcCCCCCEEEccccccCCCCchHHHH
Q 019237          107 SLSRLRYLNLSCGTSLLK--VPRPFQYLSGLVYLRLENS-NLFSL-G--SLEWLSHLSSLRHLDLSYINLTKSSDWFQVV  180 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~ls~~-~l~~~-~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l  180 (344)
                      .++.|+.+.+..+.....  .-.....++.|+.|+++++ ..... +  .......+++|+.++++++.......+....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            467788887776655543  2234456778888888763 11111 1  1123445677888888877732222223333


Q ss_pred             hhcccCcEEEecCCC-CCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCc----CcC----
Q 019237          181 AKLRSLKTLVLRSCA-LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS----LRG----  251 (344)
Q Consensus       181 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~----l~~----  251 (344)
                      ..+++|++|.+.+|. +++..-  ......++.|++|+++++..........+...+++++.|.+....    ++.    
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~  343 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS  343 (482)
T ss_pred             hhCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence            447788888876665 333221  334455577888888877553222223334445555555433322    111    


Q ss_pred             ---------CchHhhhcCCCCCEEEccCCccCCCc-cccccCCCCC--------------CEEeCCCCcC
Q 019237          252 ---------SIPEAFQHMVSLKSLHLTDNELEGGI-PKFFGNMCSL--------------NRLFLPHNKL  297 (344)
Q Consensus       252 ---------~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L--------------~~L~L~~n~l  297 (344)
                               ........+++++.+.+..+...... ...+.+++.|              +.|+++.+..
T Consensus       344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~  413 (482)
T KOG1947|consen  344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRL  413 (482)
T ss_pred             HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcc
Confidence                     11223456677777777777633222 2334445444              6777777643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=0.00018  Score=59.93  Aligned_cols=109  Identities=23%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCch-hhhhcCCCCCEEEccccccCCCCchHHHHhhccc
Q 019237          107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS  185 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~  185 (344)
                      .+..|+.+.+.+..++..  ..+-.+++|++|.++.|+....... .....+|+|+++++++|++..... ...+..+++
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhhhhcc
Confidence            445555555554433321  1233466777777777743322211 122334777777777777665422 234556666


Q ss_pred             CcEEEecCCCCCCCCCchhhccccCCcccEEEc
Q 019237          186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDL  218 (344)
Q Consensus       186 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  218 (344)
                      |..|++.+|..+....--...|..+++|++|+-
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            777777766655533221233444566666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=2.2e-05  Score=65.85  Aligned_cols=103  Identities=26%  Similarity=0.273  Sum_probs=69.0

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237           83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH  162 (344)
Q Consensus        83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~  162 (344)
                      +.+.++|++=+|.+..+   ..+.+|+.|+.|.|+-|.+...-|  +..|.+|++|+|..|.|........+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            44566777777776553   223457777777777776665433  4567788888888888877766677778888888


Q ss_pred             EEccccccCCCCc--h-HHHHhhcccCcEEE
Q 019237          163 LDLSYINLTKSSD--W-FQVVAKLRSLKTLV  190 (344)
Q Consensus       163 L~l~~~~~~~~~~--~-~~~l~~~~~L~~L~  190 (344)
                      |.|..|...+...  . ...+..+|+|+.|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888877655421  1 13456677777775

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=2.7e-05  Score=65.36  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=42.3

Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS  212 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  212 (344)
                      .+.+.|+..+|.+..+   .....|+.|+.|.|+-|.++...    .+..|.+|++|+|..|.+.+...  +.-+..+++
T Consensus        19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~----pl~rCtrLkElYLRkN~I~sldE--L~YLknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA----PLQRCTRLKELYLRKNCIESLDE--LEYLKNLPS   89 (388)
T ss_pred             HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch----hHHHHHHHHHHHHHhcccccHHH--HHHHhcCch
Confidence            3445555555555433   23445566666666666555443    34555566666666555554332  233444455


Q ss_pred             ccEEEcCCCC
Q 019237          213 IETLDLSDNN  222 (344)
Q Consensus       213 L~~L~l~~n~  222 (344)
                      |+.|++..|.
T Consensus        90 Lr~LWL~ENP   99 (388)
T KOG2123|consen   90 LRTLWLDENP   99 (388)
T ss_pred             hhhHhhccCC
Confidence            5555555553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.73  E-value=0.0035  Score=31.34  Aligned_cols=18  Identities=28%  Similarity=0.351  Sum_probs=8.6

Q ss_pred             CCEEeCCCCcCccccchHH
Q 019237          287 LNRLFLPHNKLSGELSEMI  305 (344)
Q Consensus       287 L~~L~L~~n~l~~~~~~~~  305 (344)
                      |++|+|++|.++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555555 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.68  E-value=0.019  Score=43.40  Aligned_cols=10  Identities=10%  Similarity=0.345  Sum_probs=2.7

Q ss_pred             cCCCCCEEeC
Q 019237           82 KLHDLRHLDL   91 (344)
Q Consensus        82 ~l~~L~~L~l   91 (344)
                      ++.+|+.+.+
T Consensus        10 ~~~~l~~i~~   19 (129)
T PF13306_consen   10 NCSNLESITF   19 (129)
T ss_dssp             T-TT--EEEE
T ss_pred             CCCCCCEEEE
Confidence            3333444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.51  E-value=0.032  Score=42.10  Aligned_cols=101  Identities=12%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ..++.+.+..         .+...-..+|..++.|+.+.+..+ +... -...+..+++|+.+.+.. .........|..
T Consensus        12 ~~l~~i~~~~---------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen   12 SNLESITFPN---------TIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             TT--EEEETS---------T--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CCCCEEEECC---------CeeEeChhhccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccccc
Confidence            3577777764         344444556778888999998775 5443 334566777888888864 443334455666


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccc
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSY  167 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~  167 (344)
                      +.+|+.+.+..+ +...+. ..+..+ +|+.+.+..
T Consensus        80 ~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETTT--BEEHT-TTTTT--T--EEE-TT
T ss_pred             cccccccccCcc-ccEEch-hhhcCC-CceEEEECC
Confidence            788888887654 332222 334454 666666654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.37  E-value=0.00023  Score=66.37  Aligned_cols=190  Identities=29%  Similarity=0.329  Sum_probs=107.1

Q ss_pred             CCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCcCCCcCCccc----ccC-CCCcEEEccCCCCCCCCch---hhh
Q 019237           86 LRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGTSLLKVPRPF----QYL-SGLVYLRLENSNLFSLGSL---EWL  154 (344)
Q Consensus        86 L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~----~~l-~~L~~L~ls~~~l~~~~~~---~~l  154 (344)
                      +..+.+.+|.+...+   +...+...+.|+.|++++|++.......+    ... ..+++|.+..|.++.....   ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            667777777776542   22344567778888888777764322222    122 4567777777777654322   344


Q ss_pred             hcCCCCCEEEccccccCCC--CchHHHHh----hcccCcEEEecCCCCCCCCCch-hhccccCCc-ccEEEcCCCCCCCC
Q 019237          155 SHLSSLRHLDLSYINLTKS--SDWFQVVA----KLRSLKTLVLRSCALPPINPSF-IWHFNLSTS-IETLDLSDNNLPSS  226 (344)
Q Consensus       155 ~~~~~L~~L~l~~~~~~~~--~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~-L~~L~l~~n~l~~~  226 (344)
                      .....++.++++.|.+...  ......+.    ...++++|.+.+|.++...... ...+...++ +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            5566788888888876433  11223333    3667778888887766432211 111222233 55577777777431


Q ss_pred             C---CcchhhhccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCC
Q 019237          227 S---VYPWLFNLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEG  275 (344)
Q Consensus       227 ~---~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~  275 (344)
                      .   ..+.+....+.+++++++.|.|+..    ....+..++.++.+.++.|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            0   1111111113567777887777653    34455666777777777777664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.15  E-value=0.00048  Score=64.23  Aligned_cols=192  Identities=24%  Similarity=0.199  Sum_probs=122.6

Q ss_pred             CcEEEccCCcCCCcCCc----ccccCCCCcEEEccCCCCCCCCch---hhhhcC-CCCCEEEccccccCCC--CchHHHH
Q 019237          111 LRYLNLSCGTSLLKVPR----PFQYLSGLVYLRLENSNLFSLGSL---EWLSHL-SSLRHLDLSYINLTKS--SDWFQVV  180 (344)
Q Consensus       111 L~~L~Ls~~~~~~~~~~----~~~~l~~L~~L~ls~~~l~~~~~~---~~l~~~-~~L~~L~l~~~~~~~~--~~~~~~l  180 (344)
                      +.++.+.+|.+......    .+.....|+.|++++|.+......   ..+... ..+++|.+..|.+...  ..+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            77788888877654433    334568899999999998843321   112232 4677788888877665  3445667


Q ss_pred             hhcccCcEEEecCCCCCCCCCc-hhhc----cccCCcccEEEcCCCCCCCCCCc--chhhhccCC-ccEEEccCCcCcCC
Q 019237          181 AKLRSLKTLVLRSCALPPINPS-FIWH----FNLSTSIETLDLSDNNLPSSSVY--PWLFNLSRN-ILVLDLAFNSLRGS  252 (344)
Q Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~-~~~~----~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~~-L~~L~ls~n~l~~~  252 (344)
                      .....++.+++..|.+...... ....    +....++++|.++++.++.....  .......+. +..|++..|++.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            7788899999998887522110 0111    12346788888888887431111  111222223 66688888888753


Q ss_pred             ----chHhhhcC-CCCCEEEccCCccCC----CccccccCCCCCCEEeCCCCcCccccc
Q 019237          253 ----IPEAFQHM-VSLKSLHLTDNELEG----GIPKFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       253 ----~~~~~~~~-~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                          ....+... ..+++++++.|.++.    .+...+..++.++.+.+++|.+.+...
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~  307 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV  307 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence                23344444 567899999998886    344556677899999999998876543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.08  E-value=0.01  Score=29.59  Aligned_cols=19  Identities=42%  Similarity=0.677  Sum_probs=10.2

Q ss_pred             CCEEEccCCccCCCcccccc
Q 019237          263 LKSLHLTDNELEGGIPKFFG  282 (344)
Q Consensus       263 L~~L~l~~n~~~~~~~~~l~  282 (344)
                      |++|++++|+++ .+|..++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455566666555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.13  E-value=0.027  Score=28.67  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=14.7

Q ss_pred             CCCCCEEeCCCCcCccccchHHh
Q 019237          284 MCSLNRLFLPHNKLSGELSEMIQ  306 (344)
Q Consensus       284 l~~L~~L~L~~n~l~~~~~~~~~  306 (344)
                      +++|+.|+|++|.+++..+..++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            36788888888888776666554

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.37  E-value=0.059  Score=24.92  Aligned_cols=9  Identities=33%  Similarity=0.434  Sum_probs=3.0

Q ss_pred             CEEeCCCCc
Q 019237          288 NRLFLPHNK  296 (344)
Q Consensus       288 ~~L~L~~n~  296 (344)
                      +.|+|++|.
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=0.025  Score=45.68  Aligned_cols=73  Identities=21%  Similarity=0.124  Sum_probs=36.4

Q ss_pred             CccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC-Ccccccc-CCCCCCEEeCCCC-cCccccchHHhhccC
Q 019237          238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG-GIPKFFG-NMCSLNRLFLPHN-KLSGELSEMIQNLSG  310 (344)
Q Consensus       238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  310 (344)
                      .++.+|-+++.|.....+.+.+++.++.|.+.+|.--+ ...+.+. -.++|+.|+|++| .+|+..-..+..+++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            35566666666555555555555666666665554221 1112121 2356666666666 455444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=0.015  Score=46.94  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=13.2

Q ss_pred             CccEEEccCC-cCcCCchHhhhcCCCCCEEEc
Q 019237          238 NILVLDLAFN-SLRGSIPEAFQHMVSLKSLHL  268 (344)
Q Consensus       238 ~L~~L~ls~n-~l~~~~~~~~~~~~~L~~L~l  268 (344)
                      +|+.|++++| .||+....++..+++|+.|.+
T Consensus       152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             chheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            4444444443 333333334444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.84  E-value=0.46  Score=24.47  Aligned_cols=14  Identities=43%  Similarity=0.456  Sum_probs=8.4

Q ss_pred             CCCCEEeCCCCcCc
Q 019237          285 CSLNRLFLPHNKLS  298 (344)
Q Consensus       285 ~~L~~L~L~~n~l~  298 (344)
                      ++|+.|+|++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.84  E-value=0.46  Score=24.47  Aligned_cols=14  Identities=43%  Similarity=0.456  Sum_probs=8.4

Q ss_pred             CCCCEEeCCCCcCc
Q 019237          285 CSLNRLFLPHNKLS  298 (344)
Q Consensus       285 ~~L~~L~L~~n~l~  298 (344)
                      ++|+.|+|++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.33  E-value=0.58  Score=24.76  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=14.8

Q ss_pred             CCCCEEeCCCCcCccccchHHh
Q 019237          285 CSLNRLFLPHNKLSGELSEMIQ  306 (344)
Q Consensus       285 ~~L~~L~L~~n~l~~~~~~~~~  306 (344)
                      ++|+.|+|++|.+.......++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            4678888888887755444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	344
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 228 VYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL 287
           + P L N S  ++ L L+FN L G+IP +   +  L+ L L  N LEG IP+    + +L
Sbjct: 410 IPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 288 NRLFLPHNKLSGELSEMIQN 307
             L L  N L+GE+   + N
Sbjct: 469 ETLILDFNDLTGEIPSGLSN 488

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 228 VYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL 287
           + P L N S  ++ L L+FN L G+IP +   +  L+ L L  N LEG IP+    + +L
Sbjct: 407 IPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 288 NRLFLPHNKLSGELSEMIQN 307
             L L  N L+GE+   + N
Sbjct: 466 ETLILDFNDLTGEIPSGLSN 485

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
             N+L G IP A   +  L  L++T   + G IP F   + +L  L   +N LSG L   
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 305 IQNL 308
           I +L
Sbjct: 145 ISSL 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  188 bits (480), Expect = 4e-54
 Identities = 71/319 (22%), Positives = 120/319 (37%), Gaps = 44/319 (13%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDD 64
            +  E   L++FK  + DK  +L  W   +  ++ C + GV C +    V  ++L     
Sbjct: 9   SLYREIHQLISFKDVLPDK-NLLPDW---SSNKNPCTFDGVTCRD--DKVTSIDLSSKPL 62

Query: 65  ENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK 124
                      +S +LL L  L  L LSN+H  GS V  F    + L  L+LS       
Sbjct: 63  NVGFS-----AVSSSLLSLTGLESLFLSNSHINGS-VSGF-KCSASLTSLDLS------- 108

Query: 125 VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 184
                  LSG             + +L  L   S L+ L++S   L           KL 
Sbjct: 109 ----RNSLSG------------PVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLKLN 151

Query: 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
           SL+ L L + ++   N       +    ++ L +S N +  S     +     N+  LD+
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--SGDVD-VSRCV-NLEFLDV 207

Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL-SE 303
           + N+    IP       +L+ L ++ N+L G   +       L  L +  N+  G +   
Sbjct: 208 SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 304 MIQNLSG-GCTMNSLEGVL 321
            +++L       N   G +
Sbjct: 267 PLKSLQYLSLAENKFTGEI 285

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 1e-36
 Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 23/260 (8%)

Query: 72  LKGTIS-PALLKLHDLRHLDLSNNHFGGSPVPEF--IGSLSRLRYLNLSCGTSLLKVPRP 128
           L         LKL+ L  LDLS N   G+ V  +        L++L +S   + +     
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS--GNKISGDVD 195

Query: 129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKS-SDWFQVVAKLRSLK 187
                 L +L + ++N      + +L   S+L+HLD+S   L+   S      +    LK
Sbjct: 196 VSRCVNLEFLDVSSNNFS--TGIPFLGDCSALQHLDISGNKLSGDFSRAI---STCTELK 250

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247
            L + S          I    L  S++ L L++N   +  +  +L      +  LDL+ N
Sbjct: 251 LLNISSNQFV----GPIPPLPLK-SLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGN 304

Query: 248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPK-FFGNMCSLNRLFLPHNKLSGELSEMIQ 306
              G++P  F     L+SL L+ N   G +P      M  L  L L  N+ SGEL E + 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 307 NLSGGCTM-----NSLEGVL 321
           NLS          N+  G +
Sbjct: 365 NLSASLLTLDLSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  129 bits (327), Expect = 2e-33
 Identities = 84/245 (34%), Positives = 117/245 (47%), Gaps = 18/245 (7%)

Query: 72  LKGTISPALL-KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL-KVPRP- 128
             G I   L      L  LDLS NHF G  VP F GS S L  L LS   +   ++P   
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYG-AVPPFFGSCSLLESLALS-SNNFSGELPMDT 338

Query: 129 FQYLSGLVYLRLENSNLFSLGSL-EWLSHLS-SLRHLDLSYINLTKS--SDWFQVVAKLR 184
              + GL  L L   N FS G L E L++LS SL  LDLS  N +     +  Q      
Sbjct: 339 LLKMRGLKVLDLSF-NEFS-GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKN 394

Query: 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
           +L+ L L++       P  +   N S  + +L LS N L S ++   L +LS  +  L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLS--NCS-ELVSLHLSFNYL-SGTIPSSLGSLS-KLRDLKL 449

Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
             N L G IP+   ++ +L++L L  N+L G IP    N  +LN + L +N+L+GE+ + 
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509

Query: 305 IQNLS 309
           I  L 
Sbjct: 510 IGRLE 514

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (303), Expect = 4e-30
 Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 19/245 (7%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL-KVPRPFQ 130
             G + P       L  L LS+N+F G    + +  +  L+ L+LS       ++P    
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS-FNEFSGELPESLT 364

Query: 131 YLSG-LVYLRLENSNLFSLGSLE---WLSHLSSLRHLDLSYINLTKS-SDWFQVVAKLRS 185
            LS  L+ L L + N FS G +      +  ++L+ L L     T          +    
Sbjct: 365 NLSASLLTLDLSS-NNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL---SNCSE 419

Query: 186 LKTLVLRSCALP-PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
           L +L L    L   I PS +      + +  L L  N L    +   L  +   +  L L
Sbjct: 420 LVSLHLSFNYLSGTI-PSSLGSL---SKLRDLKLWLNML-EGEIPQELMYVK-TLETLIL 473

Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
            FN L G IP    +  +L  + L++N L G IPK+ G + +L  L L +N  SG +   
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

Query: 305 IQNLS 309
           + +  
Sbjct: 534 LGDCR 538

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (299), Expect = 1e-29
 Identities = 77/265 (29%), Positives = 113/265 (42%), Gaps = 35/265 (13%)

Query: 72  LKGTISPALL-KLHDLRHLDLSNNHFGGSPVPEFIGSLS-RLRYLNLS----CGTSLLKV 125
             G +    L K+  L+ LDLS N F G  +PE + +LS  L  L+LS     G     +
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGP----I 384

Query: 126 PRPF--QYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKS--SDWFQVV 180
                    + L  L L+N N F+ G +   LS+ S L  L LS+  L+ +  S      
Sbjct: 385 LPNLCQNPKNTLQELYLQN-NGFT-GKIPPTLSNCSELVSLHLSFNYLSGTIPSSL---- 438

Query: 181 AKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL----PSSSVYPWLFNLS 236
             L  L+ L L    L    P  + +     ++ETL L  N+L    PS      L N +
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMY---VKTLETLILDFNDLTGEIPSG-----LSNCT 490

Query: 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK 296
            N+  + L+ N L G IP+    + +L  L L++N   G IP   G+  SL  L L  N 
Sbjct: 491 -NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 297 LSGELSEMIQNLSGGCTMNSLEGVL 321
            +G +   +   SG    N + G  
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 1e-27
 Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 25/246 (10%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC----GTSLLKVPR 127
           L+G I   L+ +  L  L L  N   G  +P  + + + L +++LS     G     +P+
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGE----IPK 508

Query: 128 PFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLR 184
               L  L  L+L ++N FS G++   L    SL  LDL+      +  +  F+   K+ 
Sbjct: 509 WIGRLENLAILKL-SNNSFS-GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

Query: 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
           +             I      +       +    + N L    +     N        ++
Sbjct: 567 ANF-----------IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
                 G     F +  S+  L ++ N L G IPK  G+M  L  L L HN +SG + + 
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 305 IQNLSG 310
           + +L G
Sbjct: 676 VGDLRG 681

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (264), Expect = 4e-25
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 19/234 (8%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC----GTSLLKVPR 127
           L G I   + +L +L  L LSNN F G  +P  +G    L +L+L+     GT    +P 
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGT----IPA 556

Query: 128 PFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187
                SG +      +N  +     ++ +    +    +   L       + + +L +  
Sbjct: 557 AMFKQSGKI-----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247
              + S            +     S+  LD+S N L S  +   + ++   + +L+L  N
Sbjct: 612 PCNITSRVYGGHTSPTFDNN---GSMMFLDMSYNML-SGYIPKEIGSMP-YLFILNLGHN 666

Query: 248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301
            + GSIP+    +  L  L L+ N+L+G IP+    +  L  + L +N LSG +
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 5e-18
 Identities = 48/222 (21%), Positives = 76/222 (34%), Gaps = 41/222 (18%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131
             G I   L     L  LDL+ N F G+ +P  +   S     N   G    K     + 
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGT-IPAAMFKQSGKIAANFIAG----KRYVYIKN 580

Query: 132 LSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
                      + L   G   E L+ LS+    +++       +          S+  L 
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT--SPTFDNNGSMMFLD 638

Query: 191 LRSCALPPINPSFIWHFNLS----------TSIETLDLSDNNL----PSSSVYPWLFNLS 236
           +        N        LS            +  L+L  N++    P       + +L 
Sbjct: 639 MSY------N-------MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-----VGDL- 679

Query: 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIP 278
           R + +LDL+ N L G IP+A   +  L  + L++N L G IP
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  150 bits (382), Expect = 3e-43
 Identities = 77/315 (24%), Positives = 126/315 (40%), Gaps = 57/315 (18%)

Query: 4   RCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCC--KWRGVRCSNKT--GHVKVLNL 59
            C  ++++ALL  K+ + +    LSSW       DCC   W GV C   T    V  L+L
Sbjct: 2   LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 60  RRSDDENARGKVLKGT--ISPALLKLHDLRHLDLSN-NHFGGSPVPEFIGSLSRLRYLNL 116
              +        L     I  +L  L  L  L +   N+  G P+P  I  L++L YL +
Sbjct: 58  SGLN--------LPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYI 108

Query: 117 SCGTSLL-KVPRPFQYLSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSS 174
           +  T++   +P     +  LV L   + N  S G+L   +S L +L  +      ++ + 
Sbjct: 109 T-HTNVSGAIPDFLSQIKTLVTLDF-SYNALS-GTLPPSISSLPNLVGITFDGNRISGA- 164

Query: 175 DWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 234
                                   I  S+    + S    ++ +S N L +  + P   N
Sbjct: 165 ------------------------IPDSY---GSFSKLFTSMTISRNRL-TGKIPPTFAN 196

Query: 235 LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPH 294
           L  N+  +DL+ N L G     F    + + +HL  N L   + K  G   +LN L L +
Sbjct: 197 L--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRN 253

Query: 295 NKLSGELSEMIQNLS 309
           N++ G L + +  L 
Sbjct: 254 NRIYGTLPQGLTQLK 268

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.0 bits (201), Expect = 1e-17
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 26/188 (13%)

Query: 151 LEWLSHLSSLRHLDLSYINLTKSSD-----WFQVV----AKLRSLKTLVLRSCAL---PP 198
           L+    L +   L     +   ++D     W  V+     +   +  L L    L    P
Sbjct: 12  LQIKKDLGNPTTLS----SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP 67

Query: 199 INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ 258
           I  S     NL   +  L +   N     + P +  L+  +  L +   ++ G+IP+   
Sbjct: 68  IPSSL---ANLP-YLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLS 122

Query: 259 HMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTM---- 314
            + +L +L  + N L G +P    ++ +L  +    N++SG + +   + S   T     
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 315 -NSLEGVL 321
            N L G +
Sbjct: 183 RNRLTGKI 190

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (316), Expect = 4e-32
 Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 11/234 (4%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGS-PVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130
            KG  + + + L  L  LDLS N         +     + L+YL+LS    ++ +   F 
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFL 393

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
            L  L +L  ++SNL  +        L +L +LD+S+ +   + +   +   L SL+ L 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLK 451

Query: 191 LRSCALP-PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL 249
           +   +      P     F    ++  LDLS   L    + P  FN   ++ VL+++ N+ 
Sbjct: 452 MAGNSFQENFLPDI---FTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 250 RGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC-SLNRLFLPHNKLSGELS 302
                  ++ + SL+ L  + N +     +   +   SL  L L  N  +    
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (305), Expect = 1e-30
 Identities = 50/237 (21%), Positives = 80/237 (33%), Gaps = 15/237 (6%)

Query: 74  GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 133
             I      L ++    L +          +      L  +N   G        P   L 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLK 325

Query: 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
            L  L   ++   +  S      L SL  LDLS   L+      Q      SLK L L  
Sbjct: 326 SLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 194 CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI 253
             +  ++ +F+        +E LD   +NL        +F   RN++ LD++    R + 
Sbjct: 383 NGVITMSSNFLG----LEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 254 PEAFQHMVSLKSLHLTDNELEGGI-PKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
              F  + SL+ L +  N  +    P  F  + +L  L L   +L         +LS
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (290), Expect = 1e-28
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 15/237 (6%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
                       +HL+L N  FG  P    + SL RL + +                L  
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNK-----GGNAFSEVDLPS 348

Query: 135 LVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
           L +L L  + L   G   +     +SL++LDLS+  +   S  F     L  L+ L  + 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQH 405

Query: 194 CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI 253
             L  ++      F    ++  LD+S  +      +  +FN   ++ VL +A NS + + 
Sbjct: 406 SNLKQMSEF--SVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 254 -PEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
            P+ F  + +L  L L+  +LE   P  F ++ SL  L + HN      +   + L+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (257), Expect = 2e-24
 Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 16/248 (6%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 130
           L+   S +     +L+ LDLS              SLS L  L L+ G  +  +    F 
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILT-GNPIQSLALGAFS 97

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
            LS L  L    +NL SL +   + HL +L+ L++++  +  S    +  + L +L+ L 
Sbjct: 98  GLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLD 155

Query: 191 LRSCALPPINPSFIWHF-NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL 249
           L S  +  I  + +     +     +LDLS N +  + + P  F     +  L L  N  
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEI-RLHKLTLRNNFD 212

Query: 250 RGSIPE-AFQHMVSLKSLHLTDNE------LEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302
             ++ +   Q +  L+   L   E      LE         +C+L         L   L 
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 303 EMIQNLSG 310
           ++I   + 
Sbjct: 273 DIIDLFNC 280

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (254), Expect = 6e-24
 Identities = 50/259 (19%), Positives = 87/259 (33%), Gaps = 24/259 (9%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQ 130
           ++     A   L  L  L L+ N             LS L+ L     T+L  +   P  
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAV-ETNLASLENFPIG 121

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS-DWFQVVAKLRSLK-T 188
           +L  L  L + ++ + S    E+ S+L++L HLDLS   +        +V+ ++  L  +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 189 LVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS 248
           L L    +  I P       L      L L +N   S +V          + V  L    
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRL----HKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 249 LRGS------IPEAFQHMVSLKSLHLTDNELE---GGIPKFFGNMCSLNRLFLPHNKLSG 299
            R           A + + +L         L+     I   F  + +++   L    +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 300 ELSEMIQNLSGGCTMNSLE 318
                +++ S       LE
Sbjct: 297 -----VKDFSYNFGWQHLE 310

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 36/241 (14%), Positives = 73/241 (30%), Gaps = 17/241 (7%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 130
           L    +  +  L  L+ L++++N      +PE+  +L+ L +L+LS    +  +     +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLR 170

Query: 131 YLSGLVYLRLE---NSNLFSLGSLEWLSHLSSLRHLDLSY--INLTKSSDWFQVVAKLRS 185
            L  +  L L    + N  +         +  L  L L     +L       Q    L  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ---GLAG 226

Query: 186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL----PSSSVYPWLFNLSRNILV 241
           L+   L             +  +    +  L + +  L            LFN   N+  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301
             L   ++       F +    + L L + +          ++  L            E+
Sbjct: 287 FSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 302 S 302
            
Sbjct: 345 D 345

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 13/202 (6%)

Query: 72  LKGTISP-ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK--VPRP 128
           LK        L L +L +LD+S+ H   +        LS L  L ++ G S  +  +P  
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMA-GNSFQENFLPDI 465

Query: 129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLK 187
           F  L  L +L L    L  L S    + LSSL+ L++S+ N     +  ++    L SL+
Sbjct: 466 FTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK---CLNSLQ 521

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247
            L      +       +   +  +S+  L+L+ N+   +  +       ++   L +   
Sbjct: 522 VLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579

Query: 248 SLRGSIPEAFQHMVSLKSLHLT 269
            +  + P      + + SL++T
Sbjct: 580 RMECATPSDK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 13/182 (7%)

Query: 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLR 192
                L L  + L  LGS         L+ LDLS   +    D       L  L TL+L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILT 84

Query: 193 SCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG- 251
              +  +       F+  +S++ L   + NL  +S+  +     + +  L++A N ++  
Sbjct: 85  GNPIQSLALG---AFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL----NRLFLPHNKLSGELSEMIQN 307
            +PE F ++ +L+ L L+ N+++         +  +      L L  N ++       + 
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 308 LS 309
           + 
Sbjct: 200 IR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH 267
           NL  S + LDLS N L    +  + F     + VLDL+   ++     A+Q +  L +L 
Sbjct: 25  NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 268 LTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           LT N ++      F  + SL +L      L+   +  I +L 
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (312), Expect = 2e-31
 Identities = 48/227 (21%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 81  LKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV--PRPFQYLSGLVYL 138
           L    L  L+L+ N        +    L  L  L+L     + +    + ++ L  +  +
Sbjct: 378 LAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLG-LNEIGQELTGQEWRGLENIFEI 435

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198
            L  +    L +    + + SL+ L L  + L            LR+L  L L +  +  
Sbjct: 436 YLSYNKYLQL-TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 199 INPSFIWHFNLSTSIETLDLSDNNL------PSSSVYPWLFNLSRNILVLDLAFNSLRGS 252
           IN   +        +E LDL  NNL       +     +      ++ +L+L  N     
Sbjct: 495 INDDMLEGL---EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 253 IPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
             E F+ +  LK + L  N L       F N  SL  L L  N ++ 
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (308), Expect = 6e-31
 Identities = 52/234 (22%), Positives = 87/234 (37%), Gaps = 8/234 (3%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 130
           L            +L  L L +N                L  L+LS    L         
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLS-HNGLSSTKLGTQV 142

Query: 131 YLSGLVYLRLENSNLFSLGSLEW-LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 189
            L  L  L L N+ + +L S E  +   SSL+ L+LS   + + S        +  L  L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP--GCFHAIGRLFGL 200

Query: 190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR-NILVLDLAFNS 248
            L +  L P     +     +TSI  L LS++ L S++       L   N+ +LDL++N+
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 249 LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302
           L     ++F  +  L+   L  N ++         + ++  L L  +     +S
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (289), Expect = 2e-28
 Identities = 59/260 (22%), Positives = 97/260 (37%), Gaps = 21/260 (8%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEF-IGSLSRLRYLNLSCGTSLLKV-PRPF 129
           L  T     ++L +L+ L LSNN        E  I + S L+ L LS    + +  P  F
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS-SNQIKEFSPGCF 191

Query: 130 QYLSGLVYLRLENSNL--FSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187
             +  L  L L N  L       L      +S+R+L LS   L+ +S+   +  K  +L 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLF---------NLSRN 238
            L L    L  +             +E   L  NN+    ++             NL R+
Sbjct: 252 MLDLSYNNLNVVGNDSFAWL---PQLEYFFLEYNNI--QHLFSHSLHGLFNVRYLNLKRS 306

Query: 239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
                ++  SL      +FQ +  L+ L++ DN++ G     F  + +L  L L ++  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 299 GELSEMIQNLSGGCTMNSLE 318
             L  +          + L 
Sbjct: 367 --LRTLTNETFVSLAHSPLH 384

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (285), Expect = 6e-28
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 12/230 (5%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLRLE 141
             ++  L+L++N     P   F    S+L  L++    ++ K+ P   Q L  L  L L+
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQ 81

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           ++ L  L S +  +  ++L  L L   ++ K  +      K ++L TL L    L     
Sbjct: 82  HNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKL 138

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
                     +++ L LS+N + +          + ++  L+L+ N ++   P  F  + 
Sbjct: 139 G---TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 262 SLKSLHLTDNELEGGIPKFFG---NMCSLNRLFLPHNKLSGELSEMIQNL 308
            L  L L + +L   + +         S+  L L +++LS   +     L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (270), Expect = 6e-26
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 16/235 (6%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLENSN 144
               D S+     + VP+ +   + +  LNL+    L ++P   F   S L  L +  + 
Sbjct: 6   HEVADCSHLKL--TQVPDDL--PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 145 LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFI 204
           +  L   E    L  L+ L+L +  L++ SD  +  A   +L  L L S ++  I  +  
Sbjct: 61  ISKLEP-ELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 205 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ--HMVS 262
                  ++ TLDLS N L SS+       L  N+  L L+ N ++    E        S
Sbjct: 118 VKQ---KNLITLDLSHNGL-SSTKLGTQVQLE-NLQELLLSNNKIQALKSEELDIFANSS 172

Query: 263 LKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSL 317
           LK L L+ N+++   P  F  +  L  LFL + +L   L+E +       ++ +L
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (257), Expect = 3e-24
 Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 17/240 (7%)

Query: 72  LKGTISP-ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC--GTSLLKVPRP 128
           +   ++      L ++  + LS N +           +  L+ L L      ++   P P
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK------SSDWFQVVAK 182
           FQ L  L  L L N+N+ ++ + + L  L  L  LDL + NL +             +  
Sbjct: 476 FQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVL 242
           L  L  L L S     I       F     ++ +DL  NNL  +++   +FN   ++  L
Sbjct: 535 LSHLHILNLESNGFDEIPVE---VFKDLFELKIIDLGLNNL--NTLPASVFNNQVSLKSL 589

Query: 243 DLAFNSLRGSIPEAFQH-MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL 301
           +L  N +     + F     +L  L +  N  +         +  +N       +LS   
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLT 269
           + S E  D S   L          +L  NI VL+L  N LR      F     L SL + 
Sbjct: 3   TVSHEVADCSHLKLTQVP-----DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 270 DNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
            N +    P+    +  L  L L HN+LS    +     +
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (311), Expect = 2e-31
 Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 8/227 (3%)

Query: 73  KGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQY 131
           KG+IS   + L  L +LDLS N    S    +     + LR+L+LS     + +   F  
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS-FNGAIIMSANFMG 397

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
           L  L +L  ++S L  +        L  L +LD+SY N     D   +   L SL TL +
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD--GIFLGLTSLNTLKM 455

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
              +      S +  F  +T++  LDLS   L    +   +F+    + +L+++ N+L  
Sbjct: 456 AGNSFKDNTLSNV--FANTTNLTFLDLSKCQL--EQISWGVFDTLHRLQLLNMSHNNLLF 511

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
                +  + SL +L  + N +E           SL    L +N ++
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (262), Expect = 5e-25
 Identities = 42/234 (17%), Positives = 74/234 (31%), Gaps = 15/234 (6%)

Query: 77  SPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV 136
                 L ++  + L+                 + + L++     L + P     L  L 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLEDVPK---HFKWQSLSII-RCQLKQFP--TLDLPFLK 331

Query: 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL 196
            L L  +             L SL +LDLS   L+ S           SL+ L L     
Sbjct: 332 SLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA 256
             ++ +    F     ++ LD   + L         F     +L LD+++ + +      
Sbjct: 389 IIMSAN----FMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 257 FQHMVSLKSLHLTDNELEGGIPK-FFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           F  + SL +L +  N  +       F N  +L  L L   +L      +   L 
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (258), Expect = 2e-24
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 12/219 (5%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLENS 143
             +++DLS N         F  + S L++L+LS    +  +    +  L  L  L L  +
Sbjct: 33  STKNIDLSFNPLKILKSYSF-SNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF 203
            + S  S    S L+SL +L      L         + +L +LK L +    +       
Sbjct: 91  PIQSF-SPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLP- 146

Query: 204 IWHFNLSTSIETLDLSDNNLPSSSVY--PWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
             +F+  T++  +DLS N + + +V    +L    +  L LD++ N +     +AFQ + 
Sbjct: 147 -AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI- 204

Query: 262 SLKSLHLTDNELEGGIPK-FFGNMCSLNRLFLPHNKLSG 299
            L  L L  N     I K    N+  L+   L   +   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 42/238 (17%), Positives = 78/238 (32%), Gaps = 18/238 (7%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQ 130
           ++     A   LH L +L L+ N       P     L+ L  L     T L  +   P  
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAV-ETKLASLESFPIG 125

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLR-SLKT 188
            L  L  L + ++ + S     + S+L++L H+DLSY  +   + +  Q + +      +
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 189 LVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS 248
           L +    +  I         L      L L  N   SS++          + V  L    
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKL----HELTLRGNFN-SSNIMKTCLQNLAGLHVHRLILGE 240

Query: 249 LRGSI------PEAFQHMVSL--KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            +         P   + +  +      LT           F  + +++ + L    + 
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.3 bits (240), Expect = 4e-22
 Identities = 47/249 (18%), Positives = 84/249 (33%), Gaps = 18/249 (7%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQ 130
           LK   S +     +L+ LDLS          +    L  L  L L+ G  +    P  F 
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILT-GNPIQSFSPGSFS 101

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
            L+ L  L    + L SL S   +  L +L+ L++++  +  S       + L +L  + 
Sbjct: 102 GLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVD 159

Query: 191 LRSCALPPINP-SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL 249
           L    +  I      +         +LD+S N +    +    F     +  L L  N  
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFIQDQAFQGI-KLHELTLRGNFN 216

Query: 250 RGSIPE-AFQHMVSLKSLHLTDNELEGGI------PKFFGNMCSL--NRLFLPHNKLSGE 300
             +I +   Q++  L    L   E +         P     +C +  +   L +     +
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 301 LSEMIQNLS 309
                  L+
Sbjct: 277 DIVKFHCLA 285

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 13/237 (5%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 130
           L    S  + +L  L+ L++++N      +P +  +L+ L +++LS    +  +     Q
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS-YNYIQTITVNDLQ 174

Query: 131 YLSGLVYLRLE---NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRS 185
           +L     + L    + N       +    +  L  L L     + +      Q +A L  
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLA 245
            + ++        +             +   +         S     F+   N+  + LA
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 246 FNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302
             S+     E        +SL +   +L+   P    ++  L  L L  NK S    
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNKGSISFK 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLD 217
           SS +++DLS+  L          +    L+ L L  C +  I       ++    +  L 
Sbjct: 32  SSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDK---AWHGLHHLSNLI 86

Query: 218 LSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG-G 276
           L+ N +   S  P  F+   ++  L      L          +++LK L++  N +    
Sbjct: 87  LTGNPI--QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 277 IPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310
           +P +F N+ +L  + L +N +       +Q L  
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH 267
           ++ +S + +DLS N L    +  + F+    +  LDL+   +     +A+  +  L +L 
Sbjct: 29  DIPSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 268 LTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           LT N ++   P  F  + SL  L     KL+   S  I  L 
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 13/150 (8%)

Query: 162 HLDLSYINLTKSSDWFQVVAKL-RSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSD 220
                   L+      +V   +  S K + L    L  +      +F   + ++ LDLS 
Sbjct: 15  TYQCMDQKLS------KVPDDIPSSTKNIDLSFNPLKILKSYSFSNF---SELQWLDLSR 65

Query: 221 NNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKF 280
             +   ++    ++   ++  L L  N ++   P +F  + SL++L   + +L       
Sbjct: 66  CEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

Query: 281 FGNMCSLNRLFLPHNKLSG-ELSEMIQNLS 309
            G + +L +L + HN +   +L     NL+
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 210 STSIETLDLSDNNL---PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL 266
                T    D  L   P         ++  +   +DL+FN L+     +F +   L+ L
Sbjct: 10  VVPNITYQCMDQKLSKVPD--------DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
            L+  E+E    K +  +  L+ L L  N +          L+
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 130
           L+         LH L+ L++S+N+            L  L  L+ S    +         
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCS-FNRIETSKGILQH 542

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN 169
           +   L +  L N+++  +   +        +   L  + 
Sbjct: 543 FPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 1e-29
 Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 14/241 (5%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS-CGTSLLKVPRPFQYLS 133
            +   L+ L  L+ L LS N F          +   L +L++      L       + L 
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 134 GLVYLRLENSNLFSLG-SLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVL 191
            L  L L + ++ +       L +LS L+ L+LSY       ++ F+   +   L+ L L
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK---ECPQLELLDL 407

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
               L   +      F     ++ L+LS + L        LF+    +  L+L  N    
Sbjct: 408 AFTRLKVKDAQSP--FQNLHLLKVLNLSHSLL--DISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 252 SI---PEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNL 308
                  + Q +  L+ L L+  +L       F ++  +N + L HN+L+    E + +L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523

Query: 309 S 309
            
Sbjct: 524 K 524

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 2e-29
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 11/242 (4%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 130
                S        L+ LDL+  H   S +P  +  LS L+ L LS       + +    
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLS-ANKFENLCQISAS 322

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
               L +L ++ +          L +L +LR LDLS+ ++  S      +  L  L++L 
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
           L       +       F     +E LDL+   L         F     + VL+L+ + L 
Sbjct: 383 LSYNEPLSLKTEA---FKECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 251 GSIPEAFQHMVSLKSLHLTDNELEGGI---PKFFGNMCSLNRLFLPHNKLSGELSEMIQN 307
            S  + F  + +L+ L+L  N    G          +  L  L L    LS        +
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 308 LS 309
           L 
Sbjct: 499 LK 500

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (292), Expect = 7e-29
 Identities = 51/241 (21%), Positives = 85/241 (35%), Gaps = 9/241 (3%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS--CGTSLLKVPRPF 129
            +     +      L HL +  N          + +L  LR L+LS     +        
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 130 QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 189
           + LS L  L L  +   SL   E       L  LDL++  L    D       L  LK L
Sbjct: 373 RNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLK-VKDAQSPFQNLHLLKVL 430

Query: 190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW-LFNLSRNILVLDLAFNS 248
            L    L   +      F+   +++ L+L  N+ P  ++           + +L L+F  
Sbjct: 431 NLSHSLLDISSEQL---FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 249 LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNL 308
           L      AF  +  +  + L+ N L     +   ++  +  L L  N +S  L  ++  L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546

Query: 309 S 309
           S
Sbjct: 547 S 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (281), Expect = 2e-27
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 7/233 (3%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 130
           +       L     L  L L +NH     +P+      +L+ L+     ++  + +    
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQ-NNAIHYLSKEDMS 174

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
            L     L L  +     G        +  + L+                + ++SL    
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
                   I+P+         S+E+++L  +     ++    F+    +  LDL    L 
Sbjct: 235 FEDMDDEDISPAVFEGLCE-MSVESINLQKHYF--FNISSNTFHCFSGLQELDLTATHLS 291

Query: 251 GSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSE 303
             +P     + +LK L L+ N+ E        N  SL  L +  N    EL  
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (280), Expect = 2e-27
 Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 9/231 (3%)

Query: 72  LKGTISP-ALLKLHDLRHLDLSNNHFGGSPV-PEFIGSLSRLRYLNLSCGTSLLKVPRP- 128
            +  +    L  L +LR LDLS++    S      + +LS L+ LNLS     L +    
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS-YNEPLSLKTEA 395

Query: 129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT 188
           F+    L  L L  + L    +     +L  L+ L+LS+  L  SS+  Q+   L +L+ 
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--QLFDGLPALQH 453

Query: 189 LVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS 248
           L L+    P  N            +E L LS  +L  SS+    F   + +  +DL+ N 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL--SSIDQHAFTSLKMMNHVDLSHNR 511

Query: 249 LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
           L  S  EA  H+  +  L+L  N +   +P     +     + L  N L  
Sbjct: 512 LTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (279), Expect = 4e-27
 Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 12/237 (5%)

Query: 77  SPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV 136
               L    +  ++L  ++F            S L+ L+L+  T L ++P     LS L 
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLT-ATHLSELPSGLVGLSTLK 304

Query: 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSY--INLTKSSDWFQVVAKLRSLKTLVLRSC 194
            L L  +   +L  +   S+  SL HL +      L   +   +    L +L+ L L   
Sbjct: 305 KLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLE---NLENLRELDLSHD 360

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
            +   +   +   NL + +++L+LS N     S+    F     + +LDLAF  L+    
Sbjct: 361 DIETSDCCNLQLRNL-SHLQSLNLSYNEP--LSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 255 E-AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310
           +  FQ++  LK L+L+ + L+    + F  + +L  L L  N       +   +L  
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (271), Expect = 4e-26
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 30/262 (11%)

Query: 74  GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGS-LSRLRYLNLSC--GTSLLKVPRPFQ 130
             I P        + L+                S +  L            +        
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
               +  + L+    F++ S       S L+ LDL+  +L++          L +LK LV
Sbjct: 252 CEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHLSELPSGLV---GLSTLKKLV 307

Query: 191 LRSCALPPINPSFIWHF------NLS----------------TSIETLDLSDNNLPSSSV 228
           L +     +      +F      ++                  ++  LDLS +++ +S  
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 229 YPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPK-FFGNMCSL 287
                    ++  L+L++N       EAF+    L+ L L    L+    +  F N+  L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 288 NRLFLPHNKLSGELSEMIQNLS 309
             L L H+ L     ++   L 
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLP 449

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (266), Expect = 2e-25
 Identities = 36/262 (13%), Positives = 72/262 (27%), Gaps = 29/262 (11%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQ 130
           +           H L  L L+ N          +     L++L     T +  +   P  
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFI-QTGISSIDFIPLH 126

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLR----- 184
               L  L L ++++ S+  L        L+ LD     +   S +    + +       
Sbjct: 127 NQKTLESLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 185 -----------------SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSS 227
                              ++L         +    + +  +  S+      D +    S
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-SLWLGTFEDMDDEDIS 244

Query: 228 VYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL 287
              +      ++  ++L  +         F     L+ L LT   L   +P     + +L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303

Query: 288 NRLFLPHNKLSGELSEMIQNLS 309
            +L L  NK          N  
Sbjct: 304 KKLVLSANKFENLCQISASNFP 325

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (252), Expect = 1e-23
 Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 14/243 (5%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQ 130
           L    +    +L +L  LDL+          +   S  RL  L L+    L+ +      
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLT-ANPLIFMAETALS 102

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
               L +L    + + S+     L +  +L  L L   +++              LK L 
Sbjct: 103 GPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKLKVLD 159

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
            ++ A+  ++   +       +  +L+L+ N++  + + P  F+ +     L+       
Sbjct: 160 FQNNAIHYLSKEDMSSLQ-QATNLSLNLNGNDI--AGIEPGAFDSA-VFQSLNFGGTQNL 215

Query: 251 GSIPE--AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLN--RLFLPHNKLSGELSEMIQ 306
             I +      + SL      D + E   P  F  +C ++   + L  +      S    
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 307 NLS 309
             S
Sbjct: 276 CFS 278

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 16/232 (6%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLE 141
            +    L+ S N         F   L  L +L+L+    +  +    FQ    L  L L 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-SRLINLTFLDLT-RCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP 201
            + L  +     LS   +L+HL      ++        +   ++L++L L S  +  I  
Sbjct: 90  ANPLIFMAE-TALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKL 146

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN--ILVLDLAFNSLRGSIPEAFQH 259
                   +  ++ LD  +N +    +     +  +    L L+L  N + G  P AF  
Sbjct: 147 P---KGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 260 MVSLKSLHLTDNELEGGIPK--FFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
               +SL+    +    I K      + SL                + + L 
Sbjct: 202 A-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 15/191 (7%)

Query: 112 RYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLT 171
           +  N      L ++P      +    L    + L ++ +    S L +L  LDL+   + 
Sbjct: 15  KTYNCE-NLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIY 70

Query: 172 K-SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYP 230
               D FQ       L TLVL +  L  +  +     +   +++ L      +  SS+  
Sbjct: 71  WIHEDTFQ---SQHRLDTLVLTANPLIFMAET---ALSGPKALKHLFFIQTGI--SSIDF 122

Query: 231 WLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRL 290
              +  + +  L L  N +             LK L   +N +     +   ++     L
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 291 FL--PHNKLSG 299
            L    N ++G
Sbjct: 183 SLNLNGNDIAG 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 14/185 (7%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQ 130
                + A  +   L  LDL+              +L  L+ LNLS  + L     + F 
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS-HSLLDISSEQLFD 446

Query: 131 YLSGLVYLRLENSNL--FSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLK 187
            L  L +L L+ ++    ++     L  L  L  L LS+ +L+      F     L+ + 
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT---SLKMMN 503

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247
            + L    L   +   + H         L+L+ N++  S + P L  +      ++L  N
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKG----IYLNLASNHI--SIILPSLLPILSQQRTINLRQN 557

Query: 248 SLRGS 252
            L  +
Sbjct: 558 PLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 24/149 (16%), Positives = 42/149 (28%), Gaps = 10/149 (6%)

Query: 161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSD 220
           +  +   + L +            S + L      LP I  +         ++  LDL+ 
Sbjct: 15  KTYNCENLGLNEIPGTL-----PNSTECLEFSFNVLPTIQNTTFSRL---INLTFLDLTR 66

Query: 221 NNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKF 280
             +    ++   F     +  L L  N L      A     +LK L      +       
Sbjct: 67  CQI--YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

Query: 281 FGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
             N  +L  L+L  N +S           
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTE 153

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 7/154 (4%)

Query: 157 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETL 216
            +S   L+ S+  L    +     ++L +L  L L  C +  I+      F     ++TL
Sbjct: 32  PNSTECLEFSFNVLPTIQN--TTFSRLINLTFLDLTRCQIYWIHEDT---FQSQHRLDTL 86

Query: 217 DLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG 276
            L+ N L    +     +  + +  L      +         +  +L+SL+L  N +   
Sbjct: 87  VLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 277 IPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310
                     L  L   +N +     E + +L  
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (297), Expect = 2e-29
 Identities = 36/241 (14%), Positives = 79/241 (32%), Gaps = 23/241 (9%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC---------GTSL 122
                  +   L DL  ++L N       +P+F+  L  L+ LN++C             
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 123 LKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 182
            ++         +    +  +NL    +   L  +  L  LD  +  +       +    
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH----LEAFGT 593

Query: 183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVL 242
              L  L L    +  I   F      +  +E L  S N L          ++   +  +
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDF---CAFTDQVEGLGFSHNKLKYIPNIFNAKSV-YVMGSV 649

Query: 243 DLAFNSLRGSIPEAF-----QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
           D ++N +                ++  ++ L+ NE++    + F     ++ + L +N +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 298 S 298
           +
Sbjct: 710 T 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (282), Expect = 1e-27
 Identities = 30/248 (12%), Positives = 79/248 (31%), Gaps = 21/248 (8%)

Query: 74  GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 133
             ++        ++   +  N+    P    +  + +L  L+     + ++    F    
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV--HNKVRHLEAFGTNV 595

Query: 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
            L  L+L+ + +  +   ++ +    +  L  S+  L    + F     +  + ++    
Sbjct: 596 KLTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFN-AKSVYVMGSVDFSY 653

Query: 194 C---ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
               +        +  +    +  T+ LS N +        LF     I  + L+ N + 
Sbjct: 654 NKIGSEGRNISCSMDDYKG-INASTVTLSYNEI--QKFPTELFATGSPISTIILSNNLMT 710

Query: 251 -------GSIPEAFQHMVSLKSLHLTDNELEGGIPK--FFGNMCSLNRLFLPHNKLSGEL 301
                        +++   L ++ L  N+L   +        +  L+ + + +N  S   
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SF 768

Query: 302 SEMIQNLS 309
                N S
Sbjct: 769 PTQPLNSS 776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (263), Expect = 5e-25
 Identities = 34/285 (11%), Positives = 81/285 (28%), Gaps = 42/285 (14%)

Query: 15  TFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKG 74
            +    ++      +W  + +        GV   N  G V  L+L             KG
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFG--------AKG 337

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
            +  A+ +L +L+ L    +    S        L+            +        Y   
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L    L    +     ++ +   S +   D    NL                      + 
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL----------------------TN 435

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
            +  I+ +      L T ++ +  +++            N++ +    +  +     +  
Sbjct: 436 RITFISKAI---QRL-TKLQIIYFANSPFTY-------DNIAVDWEDANSDYAKQYENEE 484

Query: 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
            ++ ++  L  + L +      +P F  ++  L  L +  N+   
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.5 bits (240), Expect = 4e-22
 Identities = 37/244 (15%), Positives = 70/244 (28%), Gaps = 26/244 (10%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR------PFQYLSGLV 136
              +  L  S+N     P      S+  +  ++ S    +    R               
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS-YNKIGSEGRNISCSMDDYKGINAS 676

Query: 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSY-----INLTKSSDWFQVVAKLRSLKTLVL 191
            + L  + +    + E  +  S +  + LS      I                 L T+ L
Sbjct: 677 TVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR-----NILVLDLAF 246
           R   L  ++  F         +  +D+S N    SS      N S+          D   
Sbjct: 736 RFNKLTSLSDDF--RATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 247 NSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL-SGELSEMI 305
           N +    P       SL  L +  N++   + +       L  L +  N   S +++ + 
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE--KLTPQLYILDIADNPNISIDVTSVC 848

Query: 306 QNLS 309
             + 
Sbjct: 849 PYIE 852

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 21/190 (11%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFG------GSPVPEFIGSLSRLRYLNLSCGTSLLKV 125
           ++   +        +  + LSNN           P      +   L  ++L     L  +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR-FNKLTSL 743

Query: 126 PRPFQY--LSGLVYLRLENSNL----FSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQV 179
              F+   L  L  + +  +          +   L         D     + +   W   
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ--WPTG 801

Query: 180 VAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 239
           +    SL  L + S  +  ++        L+  +  LD++DN   S  V      +   +
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDEK------LTPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 240 LVLDLAFNSL 249
            VL       
Sbjct: 856 YVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 19/170 (11%), Positives = 52/170 (30%), Gaps = 12/170 (7%)

Query: 154 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI 213
           L +   +  L L+             + +L  LK L   + +       F    +   + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVP--DAIGQLTELKVLSFGTHSETVSGRLF---GDEELTP 373

Query: 214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG---SIPEAFQHMVSLKSLHLTD 270
           +  +   + +          +  + + + DL  +++       P      +SLK   + +
Sbjct: 374 DMSEERKHRIRMHY-KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 271 --NELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLE 318
             N +   I K    +  L  ++  ++  + +   +    +        E
Sbjct: 433 LTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  112 bits (283), Expect = 1e-27
 Identities = 38/252 (15%), Positives = 87/252 (34%), Gaps = 25/252 (9%)

Query: 74  GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC--------GTSLLKV 125
            T       L DL  +++ N       +P F+ +L  ++ +N++C             + 
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 126 PRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS 185
                    +  + +  +NL +      L  +  L  L+  Y  L      F        
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF---GSEIK 354

Query: 186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS-RNILVLDL 244
           L +L L    +  I  +F      +  +E L  + N L    +       S   +  +D 
Sbjct: 355 LASLNLAYNQITEIPANF---CGFTEQVENLSFAHNKL--KYIPNIFDAKSVSVMSAIDF 409

Query: 245 AFNSLRG-------SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
           ++N +          +       +++ S++L++N++     + F     L+ + L  N L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 298 SGELSEMIQNLS 309
           +      +++ +
Sbjct: 470 TEIPKNSLKDEN 481

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  109 bits (275), Expect = 1e-26
 Identities = 30/298 (10%), Positives = 80/298 (26%), Gaps = 52/298 (17%)

Query: 27  LSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDL 86
            ++W  + +        GV  ++  G V  L+L              G +  A+ +L +L
Sbjct: 57  GANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFG--------ASGRVPDAIGQLTEL 107

Query: 87  RHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLE----N 142
             L L ++    +        +S            +        Y     +  L     N
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 143 SNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPS 202
           S+       +          +     N+T                           ++ +
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITF--------------------------VSKA 201

Query: 203 FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVS 262
                 L T +    + ++   +        N+       +  +     +    + ++  
Sbjct: 202 V---MRL-TKLRQFYMGNSPFVAE-------NICEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 263 LKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG--ELSEMIQNLSGGCTMNSLE 318
           L  + + +      +P F   +  +  + +  N+     +L +  Q L+       ++
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (260), Expect = 1e-24
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 18/248 (7%)

Query: 74  GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 133
                       ++ + +  N+    PV   +  + +L  L       L      F    
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL-YNQLEGKLPAFGSEI 353

Query: 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
            L  L L  + +  + +  +      + +L  ++  L    + F     +  +  +    
Sbjct: 354 KLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDFSY 411

Query: 194 CAL----PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL 249
             +                   ++ +++LS+N +  S     LF+    +  ++L  N L
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI--SKFPKELFSTGSPLSSINLMGNML 469

Query: 250 RG-------SIPEAFQHMVSLKSLHLTDNELEGGIPKF-FGNMCSLNRLFLPHNKLSGEL 301
                       E F++   L S+ L  N+L      F    +  L  + L +N  S   
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-F 528

Query: 302 SEMIQNLS 309
                N S
Sbjct: 529 PTQPLNSS 536

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (257), Expect = 3e-24
 Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 25/256 (9%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ- 130
           L+G + PA      L  L+L+ N     P   F G   ++  L+ +    L  +P  F  
Sbjct: 342 LEGKL-PAFGSEIKLASLNLAYNQITEIP-ANFCGFTEQVENLSFA-HNKLKYIPNIFDA 398

Query: 131 -YLSGLVYLRLENSNLFSL------GSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL 183
             +S +  +    + + S+                ++  ++LS   ++K     ++ +  
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK--ELFSTG 456

Query: 184 RSLKTLVLRSCALPPINPSFIWHFNLS----TSIETLDLSDNNLPSSSVYPWLFNLSRNI 239
             L ++ L    L  I  + +   N +      + ++DL  N L   S       L   +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP-YL 515

Query: 240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHL------TDNELEGGIPKFFGNMCSLNRLFLP 293
           + +DL++NS     P    +  +LK   +        N      P+      SL +L + 
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 294 HNKLSGELSEMIQNLS 309
            N +     ++  N+S
Sbjct: 575 SNDIRKVNEKITPNIS 590

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 5e-20
 Identities = 40/243 (16%), Positives = 70/243 (28%), Gaps = 37/243 (15%)

Query: 74  GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC-------GTSLLKVP 126
             + P   K  ++  ++LSNN     P  E   + S L  +NL           SL    
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 127 RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 186
             F+    L  + L  + L  L      + L  L  +DLSY + +K            +L
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP---LNSSTL 538

Query: 187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAF 246
           K   +R                        D   N          +     ++  L +  
Sbjct: 539 KGFGIR---------------------NQRDAQGNRT-LREWPEGITLCP-SLTQLQIGS 575

Query: 247 NSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQ 306
           N +R  + E      ++  L + DN        +           L ++K          
Sbjct: 576 NDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

Query: 307 NLS 309
           ++ 
Sbjct: 633 DIK 635

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (262), Expect = 4e-26
 Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 15/225 (6%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGS-LSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
              KL  L  L LS+N               + L+YL+LS    ++ +   F  L  L +
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLGLEQLEH 105

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCAL 196
           L  ++SNL  +        L +L +LD+S+ +     +  F     L SL+ L +     
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGN-- 160

Query: 197 PPINPSFIWH-FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE 255
                +F+   F    ++  LDLS   L    + P  FN   ++ VL+++ N+       
Sbjct: 161 -SFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 256 AFQHMVSLKSLHLTDNELEGGIPK--FFGNMCSLNRLFLPHNKLS 298
            ++ + SL+ L  + N +     K        SL  L L  N  +
Sbjct: 218 PYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 12/217 (5%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLRLEN 142
               L+L +N     P   F   L++L  L+LS    +      +     + L YL L  
Sbjct: 29  SATRLELESNKLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 143 SNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPS 202
           + + ++ S      L  L HLD  + NL + S+ F V   LR+L  L +           
Sbjct: 88  NGVITMSSN--FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 203 FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMV 261
               FN  +S+E L ++ N+    +  P +F   RN+  LDL+   L   +   AF  + 
Sbjct: 145 I---FNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 199

Query: 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           SL+ L+++ N         +  + SL  L    N + 
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 39/191 (20%), Positives = 57/191 (29%), Gaps = 37/191 (19%)

Query: 116 LSC-GTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS 174
           + C    L  VP      S    L LE++ L SL        L+ L  L LS   L+   
Sbjct: 12  IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKG 68

Query: 175 DWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 234
              Q      SLK L L    +  ++ +F+    L    E LD   +NL           
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL----EHLDFQHSNL----------- 113

Query: 235 LSRNILVLDLAFNSLRGSIPE--AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292
                             + E   F  + +L  L ++           F  + SL  L +
Sbjct: 114 ----------------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 293 PHNKLSGELSE 303
             N        
Sbjct: 158 AGNSFQENFLP 168

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 70  KVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-P 128
              +  +     +L +L  LDLS           F   LS L+ LN+S   +   +   P
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMS-HNNFFSLDTFP 218

Query: 129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS 166
           ++ L+ L  L    +++ +    E     SSL  L+L+
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (254), Expect = 3e-24
 Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 13/222 (5%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
                  L  L+L+ N         F   L  LR L L     L  +P   F  LS L  
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR-SNRLKLIPLGVFTGLSNLTK 108

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCAL 196
           L +  + +  L        L +L+ L++   +L   S   F   + L SL+ L L  C L
Sbjct: 109 LDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAF---SGLNSLEQLTLEKCNL 164

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA 256
             I    + H      +  L L   N+  +++  + F     + VL+++      ++   
Sbjct: 165 TSIPTEALSHL---HGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 257 FQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
             + ++L SL +T   L         ++  L  L L +N +S
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 4e-24
 Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 15/223 (6%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 137
               L +L  LD+S N         F   L  L+ L +     L+ +  R F  L+ L  
Sbjct: 99  VFTGLSNLTKLDISENKIVILLDYMFQD-LYNLKSLEVG-DNDLVYISHRAFSGLNSLEQ 156

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRS-CA 195
           L LE  NL S+ + E LSHL  L  L L ++N+       F    +L  LK L +     
Sbjct: 157 LTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSF---KRLYRLKVLEISHWPY 212

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE 255
           L  + P+ ++  NL     +L ++  NL  ++V          +  L+L++N +      
Sbjct: 213 LDTMTPNCLYGLNL----TSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 256 AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
               ++ L+ + L   +L    P  F  +  L  L +  N+L+
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 13/216 (6%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLRLENS 143
           + R LDL  N        EF      L  L L+    +  V P  F  L  L  L L ++
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPS 202
            L  +      + LS+L  LD+S   +       FQ    L +LK+L +    L  I+  
Sbjct: 91  RLKLIPL-GVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHR 146

Query: 203 FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVS 262
                    S+E L L   NL  +S+     +    ++VL L   ++      +F+ +  
Sbjct: 147 AFSGL---NSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 263 LKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           LK L ++       +        +L  L + H  L+
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.4 bits (209), Expect = 3e-18
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 16/227 (7%)

Query: 84  HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLEN 142
              R +      F    VPE I   +  R L+L     +  + +  F     L  L L  
Sbjct: 11  AQDRAVLCHRKRF--VAVPEGI--PTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNE 65

Query: 143 SNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           + + ++      ++L +LR L L    L       F     L +L  L +    +  +  
Sbjct: 66  NIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENKIVILLD 121

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
                F    ++++L++ DN+L    +    F+   ++  L L   +L     EA  H+ 
Sbjct: 122 YM---FQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNL 308
            L  L L    +       F  +  L  L + H      ++      
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 34/224 (15%)

Query: 75  TISPALLK-LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYL 132
            +   + + L++L+ L++ +N         F G L+ L  L L    +L  +P     +L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG-LNSLEQLTLE-KCNLTSIPTEALSHL 175

Query: 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK--SSDWFQ------------ 178
            GL+ LRL + N+ ++        L  L+ L++S+       + +               
Sbjct: 176 HGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 179 --------VVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYP 230
                    V  L  L+ L L    +  I  S     +    ++ + L    L  + V P
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM---LHELLRLQEIQLVGGQL--AVVEP 289

Query: 231 WLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNEL 273
           + F     + VL+++ N L  ++ E  F  + +L++L L  N L
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (255), Expect = 4e-24
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 8/200 (4%)

Query: 73  KGTISPALLKLHDLRHLDLSNNHFGGSPVPEF-IGSLSRLRYLNLSCGTSLLKVPRPFQY 131
           KG  + + + L  L  LDLS N               + L+YL+LS    ++ +   F  
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLG 394

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
           L  L +L  ++SNL  +        L +L +LD+S+ +   + +   +   L SL+ L +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKM 452

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
              +        I  F    ++  LDLS   L    + P  FN   ++ VL++A N L+ 
Sbjct: 453 AGNSFQENFLPDI--FTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 252 SIPEAFQHMVSLKSLHLTDN 271
                F  + SL+ + L  N
Sbjct: 509 VPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 1e-23
 Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 12/220 (5%)

Query: 81  LKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS--CGTSLLKVPRPFQYLSGLVYL 138
           LKL  L+ L  ++N  G       +  L  L +L+LS    +      +     + L YL
Sbjct: 322 LKLKSLKRLTFTSNKGGN--AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198
            L  + + ++ S      L  L HLD  + NL + S+ F V   LR+L  L +       
Sbjct: 379 DLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRV 435

Query: 199 INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ 258
                   FN  +S+E L ++ N+    +  P +F   RN+  LDL+   L    P AF 
Sbjct: 436 AFNGI---FNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 259 HMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            + SL+ L++  N+L+      F  + SL +++L  N   
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.6 bits (238), Expect = 6e-22
 Identities = 57/219 (26%), Positives = 88/219 (40%), Gaps = 12/219 (5%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLENS 143
             ++LDLS N         F  S   L+ L+LS    +  +    +Q LS L  L L  +
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF 203
            + SL +L   S LSSL+ L     NL    +    +  L++LK L +    +       
Sbjct: 87  PIQSL-ALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 204 IWHFNLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
              F+  T++E LDLS N + S   +    L  +    L LDL+ N +    P AF+ + 
Sbjct: 144 Y--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 262 SLKSLHLTDNELEGGIPK-FFGNMCSLNRLFLPHNKLSG 299
            L  L L +N     + K     +  L    L   +   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.5 bits (217), Expect = 4e-19
 Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 16/238 (6%)

Query: 77  SPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGL 135
           S +     +L+ LDLS              SLS L  L L+ G  +  +    F  LS L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSL 102

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA 195
             L    +NL SL +   + HL +L+ L++++ NL +S    +  + L +L+ L L S  
Sbjct: 103 QKLVAVETNLASLEN-FPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 196 LPPINP-SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
           +  I          +     +LDLS N +  + + P  F     +  L L  N    ++ 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEI-RLHKLTLRNNFDSLNVM 217

Query: 255 E-AFQHMVSLKSLHLT------DNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMI 305
           +   Q +  L+   L       +  LE         +C+L         L   L ++I
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 43/231 (18%), Positives = 77/231 (33%), Gaps = 16/231 (6%)

Query: 81  LKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRL 140
           L    +    L+   +    + +    L+ +   +L    ++ +V   F Y  G  +L L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV-SVTIERVK-DFSYNFGWQHLEL 311

Query: 141 ENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN 200
            N       +L     L SL+ L  +      +         L SL+ L L    L    
Sbjct: 312 VNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKG 363

Query: 201 PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQH 259
                 F   TS++ LDLS N +   ++      L   +  LD   ++L+       F  
Sbjct: 364 CCSQSDFGT-TSLKYLDLSFNGV--ITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLS 419

Query: 260 MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL-SEMIQNLS 309
           + +L  L ++           F  + SL  L +  N        ++   L 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 12/184 (6%)

Query: 73  KGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP--FQ 130
           KG  S +      L++LDLS N      +      L +L +L+    ++L ++     F 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFL 418

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
            L  L+YL + +++     +    + LSSL  L ++  +  ++     +  +LR+L  L 
Sbjct: 419 SLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLD 476

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
           L  C L  ++P+    FN  +S++ L+++ N L   SV   +F+   ++  + L  N   
Sbjct: 477 LSQCQLEQLSPTA---FNSLSSLQVLNMASNQL--KSVPDGIFDRLTSLQKIWLHTNPWD 531

Query: 251 GSIP 254
            S P
Sbjct: 532 CSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.5 bits (199), Expect = 7e-17
 Identities = 49/252 (19%), Positives = 84/252 (33%), Gaps = 24/252 (9%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 137
           A   L  L  L L+ N             LS L+ L     T+L  +   P  +L  L  
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKE 128

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLR-SLKTLVLRSCA 195
           L + ++ + S    E+ S+L++L HLDLS   +        +V+ ++     +L L    
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI-- 253
           +  I P       L      L L +N   S +V          + V  L     R     
Sbjct: 189 MNFIQPGAFKEIRL----HKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 254 ----PEAFQHMVSLKSLHLTDNELEG---GIPKFFGNMCSLNRLFLPHNKLSGELSEMIQ 306
                 A + + +L         L+     I   F  + +++   L    +       ++
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----VK 298

Query: 307 NLSGGCTMNSLE 318
           + S       LE
Sbjct: 299 DFSYNFGWQHLE 310

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 7e-15
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 8/153 (5%)

Query: 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLD 217
            S ++LDLS+  L     +         L+ L L  C +  I           + + TL 
Sbjct: 28  FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLI 82

Query: 218 LSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNEL-EGG 276
           L+ N +   S+    F+   ++  L     +L         H+ +LK L++  N +    
Sbjct: 83  LTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 277 IPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           +P++F N+ +L  L L  NK+       ++ L 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 41/241 (17%), Positives = 79/241 (32%), Gaps = 16/241 (6%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQ 130
           L    +  +  L  L+ L++++N      +PE+  +L+ L +L+LS    +  +     +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLR 170

Query: 131 YLSGLVYLRLE---NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187
            L  +  L L    + N  +         +  L  L L   N    +     +  L  L+
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN-NFDSLNVMKTCIQGLAGLE 228

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL----PSSSVYPWLFNLSRNILVLD 243
              L             +  +    +  L + +  L            LFN   N+    
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 244 LAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSE 303
           L   ++      ++      + L L + +     P     + SL RL    NK     SE
Sbjct: 289 LVSVTIERVKDFSYNF--GWQHLELVNCKFG-QFP--TLKLKSLKRLTFTSNKGGNAFSE 343

Query: 304 M 304
           +
Sbjct: 344 V 344

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH 267
           NL  S + LDLS N L    +  + F     + VLDL+   ++     A+Q +  L +L 
Sbjct: 25  NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 268 LTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           LT N ++      F  + SL +L      L+   +  I +L 
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 20/223 (8%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 138
               L +L  L L NN         F   L +L  L LS    L ++P        L  L
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS-KNQLKELPEKM--PKTLQEL 126

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKS---SDWFQVVAKLRSLKTLVLRSCA 195
           R+  + +  +      + L+ +  ++L    L  S   +  FQ    ++ L  + +    
Sbjct: 127 RVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQ---GMKKLSYIRIADTN 182

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE 255
           +  I         L  S+  L L  N +  + V         N+  L L+FNS+      
Sbjct: 183 ITTIPQ------GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 256 AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           +  +   L+ LHL +N+L   +P    +   +  ++L +N +S
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 34/201 (16%), Positives = 79/201 (39%), Gaps = 19/201 (9%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPE--FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV 136
               L+ +  ++L  N    S +    F G + +L Y+ ++  T++  +P+       L 
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIA-DTNITTIPQ--GLPPSLT 195

Query: 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL 196
            L L+ + +  + +   L  L++L  L LS+ +++   +    +A    L+ L L +  L
Sbjct: 196 ELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDN--GSLANTPHLRELHLNNNKL 252

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNL----PSSSVYPWLFNLSRNILVLDLAFNSLRGS 252
             +        +    I+ + L +NN+     +    P       +   + L  N ++  
Sbjct: 253 VKVPGGL---ADH-KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 253 I--PEAFQHMVSLKSLHLTDN 271
              P  F+ +    ++ L + 
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 25/222 (11%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS--CGTSLLKVPRPFQYLSGLVYLRLENS 143
           L+ L +  N         F G L+++  + L      S       FQ +  L Y+R+ ++
Sbjct: 123 LQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPS 202
           N+ ++          SL  L L    +TK  +   +    L +L  L L   ++  ++  
Sbjct: 182 NITTIPQ----GLPPSLTELHLDGNKITKVDAASLK---GLNNLAKLGLSFNSISAVDNG 234

Query: 203 FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG------SIPEA 256
            + +      +  L L++N L    V   L +  + I V+ L  N++          P  
Sbjct: 235 SLANT---PHLRELHLNNNKL--VKVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 257 FQHMVSLKSLHLTDNELEGGI--PKFFGNMCSLNRLFLPHNK 296
                S   + L  N ++     P  F  +     + L + K
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.0 bits (190), Expect = 5e-16
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 22/228 (9%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENS 143
            LR +  S+       VP+ +        L+L     + ++    F+ L  L  L L N+
Sbjct: 32  HLRVVQCSDLGL--EKVPKDLPP--DTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINN 86

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPS 202
            +  +      + L  L  L LS   L +            ++L+ L +    +  +  S
Sbjct: 87  KISKISP-GAFAPLVKLERLYLSKNQLKELPEKMP------KTLQELRVHENEITKVRKS 139

Query: 203 FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMV 261
               FN    +  ++L  N L SS +    F   + +  + +A  ++  +IP+       
Sbjct: 140 ---VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--- 192

Query: 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           SL  LHL  N++          + +L +L L  N +S   +  + N  
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 3e-23
 Identities = 46/238 (19%), Positives = 94/238 (39%), Gaps = 22/238 (9%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131
           LK  ++       +++ LDLS N          +   ++L  LNLS   ++L      + 
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSS--NVLYETLDLES 78

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
           LS L  L L N+ +  L          S+  L  +  N+++ S      ++ +  K + L
Sbjct: 79  LSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSC-----SRGQGKKNIYL 127

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
            +  +  +           + ++ LDL  N +  +  +  L   S  +  L+L +N +  
Sbjct: 128 ANNKITMLRDLDEGCR---SRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
            +         LK+L L+ N+L   +   F +   +  + L +NKL   + + ++   
Sbjct: 183 DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 21/227 (9%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             L  L  LR LDL+NN+       + +     +  L+ +   ++ +V        G   
Sbjct: 74  LDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAA-NNNISRVS--CSRGQGKKN 124

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           + L N+ +  L  L+     S +++LDL    +   +   ++ A   +L+ L L+   + 
Sbjct: 125 IYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIY 182

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            +    ++       ++TLDLS N L  + + P   + +  +  + L  N L   I +A 
Sbjct: 183 DVKGQVVF-----AKLKTLDLSSNKL--AFMGPEFQSAA-GVTWISLRNNKLV-LIEKAL 233

Query: 258 QHMVSLKSLHLTDNELEGG-IPKFFGNMCSLNRLFLPHNKLSGELSE 303
           +   +L+   L  N    G +  FF     +  +     K     +E
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 23/200 (11%)

Query: 102 PEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS 159
            E   + +R +   ++       L      Q    +  L L  + L  + S   L+  + 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTK 59

Query: 160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLS 219
           L  L+LS   L ++ D    +  L +L+TL L +  +  +            SIETL  +
Sbjct: 60  LELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVG--------PSIETLHAA 107

Query: 220 DNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG-GIP 278
           +NN+   S      +  +    + LA N +             ++ L L  NE++     
Sbjct: 108 NNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 279 KFFGNMCSLNRLFLPHNKLS 298
           +   +  +L  L L +N + 
Sbjct: 163 ELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 32/177 (18%), Positives = 50/177 (28%), Gaps = 34/177 (19%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 138
                  +++LDL  N        E   S   L +LNL                      
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ--------------------- 177

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198
                N   +  ++     + L+ LDLS   L      F        +  + LR+  L  
Sbjct: 178 ----YN--FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNNKLVL 228

Query: 199 INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE 255
           I  +       S ++E  DL  N     ++  +     R   V       L G   E
Sbjct: 229 IEKA----LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           +I E  Q+    K   +TD+ L+  +     +  ++  L L  N LS   +  +   +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.4 bits (245), Expect = 6e-23
 Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 22/238 (9%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131
           LK  ++       +++ LDLS N          +   ++L  LNLS    L +     + 
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLS-SNVLYETL-DLES 78

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
           LS L  L L N+ +  L          S+  L  +  N+++ S      ++ +  K + L
Sbjct: 79  LSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSC-----SRGQGKKNIYL 127

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
            +  +  +           + ++ LDL  N +  +  +  L   S  +  L+L +N +  
Sbjct: 128 ANNKITMLRDLDEGCR---SRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
              +       LK+L L+ N+L   +   F +   +  + L +NKL   + + ++   
Sbjct: 184 VKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.0 bits (218), Expect = 2e-19
 Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 21/220 (9%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             L  L  LR LDL+NN+       + +     +  L+ +   ++ +V        G   
Sbjct: 74  LDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAA-NNNISRV--SCSRGQGKKN 124

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           + L N+ +  L  L+     S +++LDL    +  + ++ ++ A   +L+ L L+   + 
Sbjct: 125 IYLANNKITMLRDLD-EGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIY 182

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            +    ++       ++TLDLS N L  + + P   + +  +  + L  N L   I +A 
Sbjct: 183 DVKGQVVF-----AKLKTLDLSSNKL--AFMGPEFQSAA-GVTWISLRNNKLV-LIEKAL 233

Query: 258 QHMVSLKSLHLTDNELEGG-IPKFFGNMCSLNRLFLPHNK 296
           +   +L+   L  N    G +  FF     +  +     K
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 3e-19
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 22/220 (10%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 138
            L     L  L+LS+N    +     + SLS LR L+L+    + ++         +  L
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLN-NNYVQELLV----GPSIETL 104

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198
              N+N+  +      S     +++ L+   +T   D          ++ L L+   +  
Sbjct: 105 HAANNNISRVSC----SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDT 158

Query: 199 INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ 258
           +N +       S ++E L+L  N +    V   +      +  LDL+ N L   +   FQ
Sbjct: 159 VNFA--ELAASSDTLEHLNLQYNFI--YDVKGQVVF--AKLKTLDLSSNKLA-FMGPEFQ 211

Query: 259 HMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
               +  + L +N+L   I K      +L    L  N   
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 23/201 (11%)

Query: 101 VPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLS 158
           + E   + +R +   ++       L      Q    +  L L  + L  + +   L+  +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPLSQISA-ADLAPFT 58

Query: 159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDL 218
            L  L+LS   L ++ D    +  L +L+TL L +  +  +            SIETL  
Sbjct: 59  KLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVG--------PSIETLHA 106

Query: 219 SDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG-GI 277
           ++NN+  S V        +    + LA N +             ++ L L  NE++    
Sbjct: 107 ANNNI--SRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 278 PKFFGNMCSLNRLFLPHNKLS 298
            +   +  +L  L L +N + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.2 bits (190), Expect = 7e-16
 Identities = 35/261 (13%), Positives = 71/261 (27%), Gaps = 31/261 (11%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS-------------- 117
           +             +++LDL  N        E   S   L +LNL               
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191

Query: 118 -------CGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSY--I 168
                      L  +   FQ  +G+ ++ L N+ L  +     L    +L H DL     
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGF 249

Query: 169 NLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSV 228
           +     D+F   +K + ++T+  ++                          D   P +  
Sbjct: 250 HCGTLRDFF---SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 229 YPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLN 288
              L      +L       S    +    ++    + +     +    I +      +  
Sbjct: 307 LIALKRKEHALLSGQ---GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 289 RLFLPHNKLSGELSEMIQNLS 309
            L      L  ++S   +  +
Sbjct: 364 TLEQKKKALDEQVSNGRRAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 21/197 (10%), Positives = 42/197 (21%), Gaps = 30/197 (15%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
            I  AL    +L H DL  N F    + +F     R++ +       L    +  +  + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL--TGQNEEECTV 285

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
                        L +         L  L                         L  +  
Sbjct: 286 PTLGHYGAYCCEDLPA----PFADRLIALKRK------------------EHALLSGQGS 323

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
               +                +D         +V   +    +  + L+    +L   + 
Sbjct: 324 ETERLECERENQARQ----REIDALKEQY--RTVIDQVTLRKQAKITLEQKKKALDEQVS 377

Query: 255 EAFQHMVSLKSLHLTDN 271
              +    L        
Sbjct: 378 NGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 13/68 (19%), Positives = 23/68 (33%)

Query: 232 LFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF 291
           +        +  +  +SL+ ++    Q   ++K L L+ N L             L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 292 LPHNKLSG 299
           L  N L  
Sbjct: 65  LSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           +I E  Q+    K   +TD+ L+  +     +  ++  L L  N LS   +  +   +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 9e-23
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 24/235 (10%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
           T   AL  L +LR L L+ ++         + +L+++  LNL      L    P   ++G
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLG-ANHNLSDLSPLSNMTG 156

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L YL +  S    +  +  +++L+ L  L L+Y  +   S     +A L SL        
Sbjct: 157 LNYLTVTESK---VKDVTPIANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVN 209

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
            +  I P         T + +L + +N +   S    L NLS  +  L++  N +  S  
Sbjct: 210 QITDITP-----VANMTRLNSLKIGNNKITDLSP---LANLS-QLTWLEIGTNQI--SDI 258

Query: 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
            A + +  LK L++  N++         N+  LN LFL +N+L  E  E+I  L+
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 4e-22
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 22/222 (9%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             L  L  +  L+L  NH         + +++ L YL ++  + +  V  P   L+ L  
Sbjct: 126 SPLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVT-ESKVKDVT-PIANLTDLYS 181

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L L  + +     +  L+ L+SL +       +T        VA +  L +L + +  + 
Sbjct: 182 LSLNYNQI---EDISPLASLTSLHYFTAYVNQITD----ITPVANMTRLNSLKIGNNKIT 234

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            ++P         + +  L++  N +   S    + +L+  + +L++  N +  S     
Sbjct: 235 DLSP-----LANLSQLTWLEIGTNQI---SDINAVKDLT-KLKMLNVGSNQI--SDISVL 283

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
            ++  L SL L +N+L     +  G + +L  LFL  N ++ 
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.2 bits (230), Expect = 2e-21
 Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 24/220 (10%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLR 139
              L +     L                L  +  L ++ G  +  +    +YL+ L YL 
Sbjct: 18  DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVA-GEKVASIQ-GIEYLTNLEYLN 72

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPI 199
           L  +    +  +  LS+L  L +L +    +T        +  L +L+ L L    +  I
Sbjct: 73  LNGNQ---ITDISPLSNLVKLTNLYIGTNKITD----ISALQNLTNLRELYLNEDNISDI 125

Query: 200 NPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQH 259
           +P         T + +L+L  N+    S    L N++  +  L +  + ++   P    +
Sbjct: 126 SP-----LANLTKMYSLNLGANHN--LSDLSPLSNMT-GLNYLTVTESKVKDVTP--IAN 175

Query: 260 MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
           +  L SL L  N++E   P    ++ SL+      N+++ 
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.9 bits (211), Expect = 9e-19
 Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 24/225 (10%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
           T      +L  +  L ++          + I  L+ L YLNL+   + +    P   L  
Sbjct: 35  TDVVTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNG--NQITDISPLSNLVK 89

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L  L +   N  +   +  L +L++LR L L+  N++  S     +A L  + +L L + 
Sbjct: 90  LTNLYIGT-NKIT--DISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGAN 142

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
                        N+ T +  L ++++ +   +    L +L      L L +N +    P
Sbjct: 143 HNLSDLSPL---SNM-TGLNYLTVTESKVKDVTPIANLTDLY----SLSLNYNQIEDISP 194

Query: 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
                + SL       N++    P    NM  LN L + +NK++ 
Sbjct: 195 --LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.0 bits (175), Expect = 5e-14
 Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 21/200 (10%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
                +  L DL  L L+ N          + SL+ L Y       + +    P   ++ 
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYV--NQITDITPVANMTR 222

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L  L++ N+ +  L  L   ++LS L  L++    ++        V  L  LK L + S 
Sbjct: 223 LNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQISD----INAVKDLTKLKMLNVGSN 275

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
            +  I+       N  + + +L L++N L +  +   +  L+ N+  L L+ N +    P
Sbjct: 276 QISDISV-----LNNLSQLNSLFLNNNQLGNEDMEV-IGGLT-NLTTLFLSQNHITDIRP 328

Query: 255 EAFQHMVSLKSLHLTDNELE 274
                +  + S    +  ++
Sbjct: 329 --LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 21/176 (11%)

Query: 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
           G   L    + +     +   + L+      L   ++T          +L S+  LV+  
Sbjct: 1   GAATLATLPAPI---NQIFPDADLAEGIRAVLQKASVTDVVT----QEELESITKLVVAG 53

Query: 194 CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI 253
             +  I           T++E L+L+ N +   S    L  L+     L +  N +  + 
Sbjct: 54  EKVASIQG-----IEYLTNLEYLNLNGNQITDISPLSNLVKLTN----LYIGTNKI--TD 102

Query: 254 PEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
             A Q++ +L+ L+L ++ +    P    N+  +  L L  N    +LS  + N++
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMT 155

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
            A+  L  L+ L++ +N          + +LS+L  L L+      +       L+ L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK 172
           L L  +++     +  L+ LS +   D +   + K
Sbjct: 316 LFLSQNHI---TDIRPLASLSKMDSADFANQVIKK 347

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.2 bits (237), Expect = 5e-22
 Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 16/217 (7%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS-CGTSLLKVPRPFQYLSGLVYLRLENS 143
           + R+L+L  N+        F   L  L  L L       ++    F  L+ L  L L ++
Sbjct: 76  NTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDN 133

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSC-ALPPINP 201
            L  + S     +LS LR L L    +    S  F    ++ SL  L L     L  I+ 
Sbjct: 134 WLTVIPS-GAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEYISE 189

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
                F    +++ L+L   N+      P L  L   +  L+++ N      P +F  + 
Sbjct: 190 G---AFEGLFNLKYLNLGMCNI---KDMPNLTPLV-GLEELEMSGNHFPEIRPGSFHGLS 242

Query: 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           SLK L + ++++       F  + SL  L L HN LS
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.7 bits (233), Expect = 2e-21
 Identities = 60/220 (27%), Positives = 88/220 (40%), Gaps = 16/220 (7%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
               LH L  L L  N      V  F G L+ L  L L     L  +P   F+YLS L  
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELF-DNWLTVIPSGAFEYLSKLRE 151

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN-LTK-SSDWFQVVAKLRSLKTLVLRSCA 195
           L L N+ + S+ S    + + SL  LDL  +  L   S   F+    L +LK L L  C 
Sbjct: 152 LWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCN 207

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE 255
           +       + +      +E L++S N+     + P  F+   ++  L +  + +      
Sbjct: 208 I-----KDMPNLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

Query: 256 AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
           AF  + SL  L+L  N L       F  +  L  L L HN
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 14/196 (7%)

Query: 116 LSC-GTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS 174
           + C    L +VP+     S   YL L  +N+  + +     HL  L  L L   ++ +  
Sbjct: 59  VVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIE 115

Query: 175 DWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 234
                   L SL TL L    L  I       F   + +  L L +N +   S+  + FN
Sbjct: 116 V--GAFNGLASLNTLELFDNWLTVIPSG---AFEYLSKLRELWLRNNPI--ESIPSYAFN 168

Query: 235 LSRNILVLDLA-FNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP 293
              +++ LDL     L      AF+ + +LK L+L    ++  +P     +  L  L + 
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNL-TPLVGLEELEMS 226

Query: 294 HNKLSGELSEMIQNLS 309
            N            LS
Sbjct: 227 GNHFPEIRPGSFHGLS 242

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 37/168 (22%), Positives = 54/168 (32%), Gaps = 30/168 (17%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
           A   L  LR L L NN     P   F   +  L  L+L     L  +    F+ L  L Y
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLR------------ 184
           L L   N+  + +L   + L  L  L++S  +  +     F  ++ L+            
Sbjct: 201 LNLGMCNIKDMPNL---TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 185 ---------SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL 223
                    SL  L L    L  +       F     +  L L  N  
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDL---FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLT 269
           S     +  +   L  S V P    +  N   L+L  N+++    + F+H+  L+ L L 
Sbjct: 53  SNQFSKVVCTRRGL--SEV-PQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 270 DNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            N +       F  + SLN L L  N L+
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLT 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 6e-22
 Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 15/241 (6%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 138
               L  L  L L NN         F   L +L+ L +S    L+++P      S LV L
Sbjct: 73  DFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYIS-KNHLVEIPPNL--PSSLVEL 128

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198
           R+ ++ +  +      S L ++  +++    L  S         L  L  L +    L  
Sbjct: 129 RIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186

Query: 199 INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ 258
           I        +L  ++  L L  N +   ++          +  L L  N +R     +  
Sbjct: 187 IPK------DLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 259 HMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLE 318
            + +L+ LHL +N+L   +P    ++  L  ++L  N ++         +  G       
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 319 G 319
           G
Sbjct: 298 G 298

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 28/233 (12%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS--CGTSLLKVPRPFQYL 132
            I P L     L  L + +N     P   F G L  +  + +      +    P  F  L
Sbjct: 116 EIPPNLPS--SLVELRIHDNRIRKVPKGVFSG-LRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVL 191
             L YLR+  + L  +          +L  L L +  +     +      +   L  L L
Sbjct: 173 K-LNYLRISEAKLTGIPK----DLPETLNELHLDHNKIQAIELEDLL---RYSKLYRLGL 224

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
               +  I    +    L  ++  L L +N L  S V   L +L + + V+ L  N++  
Sbjct: 225 GHNQIRMIENGSLS--FL-PTLRELHLDNNKL--SRVPAGLPDL-KLLQVVYLHTNNITK 278

Query: 252 SIPEAFQHM------VSLKSLHLTDNELEGGI--PKFFGNMCSLNRLFLPHNK 296
                F  +           + L +N +      P  F  +     +   + K
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH 267
            +S     LDL +N++  S +    F   +++  L L  N +     +AF  +  L+ L+
Sbjct: 51  EISPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108

Query: 268 LTDN---ELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           ++ N   E+   +P       SL  L +  N++ 
Sbjct: 109 ISKNHLVEIPPNLPS------SLVELRIHDNRIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 212 SIETLDLSDNNL---PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHL 268
            +  +  SD  L   P          +S +  +LDL  N +     + F+ +  L +L L
Sbjct: 34  HLRVVQCSDLGLKAVPK--------EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 269 TDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            +N++     K F  +  L +L++  N L 
Sbjct: 86  VNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.0 bits (239), Expect = 7e-22
 Identities = 48/249 (19%), Positives = 96/249 (38%), Gaps = 22/249 (8%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSG--L 135
               L  L  LDLS N      +    G L+ L+ ++ S    +  V     + L G  L
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQGKTL 176

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK---------------SSDWFQVV 180
            +  L  ++L+S  S++W   ++  R++ L  ++++                S      +
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 181 AKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL 240
                +         +   + +       S S+  LDLS   +   S+   +F   +++ 
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFV--FSLNSRVFETLKDLK 293

Query: 241 VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE 300
           VL+LA+N +     EAF  + +L+ L+L+ N L       F  +  +  + L  N ++  
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 301 LSEMIQNLS 309
             +  + L 
Sbjct: 354 QDQTFKFLE 362

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.0 bits (226), Expect = 3e-20
 Identities = 52/257 (20%), Positives = 93/257 (36%), Gaps = 21/257 (8%)

Query: 72  LKGTISP-ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS--CGTSLLKVPRP 128
              TI   A   L +LR LDL ++         F G L  L  L L     +  +     
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGY 118

Query: 129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLK 187
           F+ L  L  L L  + + SL        L+SL+ +D S   +        + + + ++L 
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-QGKTLS 177

Query: 188 TLVLRSCALPPINP-SFIWHFNL--STSIETLDLSDNNLPS----------SSVYPWLFN 234
              L + +L       +    N   +  +E LD+S N              S    +   
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 235 LSRNILVLDLAFNSLRGSIPEAFQHMV--SLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292
           L+ +I+     F++++      F  +   S++ L L+   +     + F  +  L  L L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 293 PHNKLSGELSEMIQNLS 309
            +NK++    E    L 
Sbjct: 298 AYNKINKIADEAFYGLD 314

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.6 bits (225), Expect = 4e-20
 Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 23/251 (9%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 137
           +   L  L+ L+L + +   +   E   +L  LR L+L   + +  +    FQ L  L  
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-SSKIYFLHPDAFQGLFHLFE 101

Query: 138 LRLENSNLFSLG-SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL 196
           LRL    L        +  +L +L  LDLS  N  +S        KL SLK++   S  +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL-------------FNLSRN---IL 240
             +    +       ++    L+ N+L S     W               ++S N   + 
Sbjct: 161 FLVCEHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 241 VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC--SLNRLFLPHNKLS 298
           +     N++  S   +      +       + ++      F  +   S+  L L H  + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 299 GELSEMIQNLS 309
              S + + L 
Sbjct: 280 SLNSRVFETLK 290

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.6 bits (225), Expect = 4e-20
 Identities = 44/245 (17%), Positives = 79/245 (32%), Gaps = 23/245 (9%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLRLE 141
           L+    L LS N+        F   L +L+ L L    + L +    F+ L  L  L L 
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           +S ++ L   +    L  L  L L +  L+ +         L++L  L L    +  +  
Sbjct: 82  SSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ--- 258
                F    S++++D S N +     +       + +    LA NSL   +   +    
Sbjct: 141 H--PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 259 ---HMVSLKSLHLTDNELEGGIPKFFGN------------MCSLNRLFLPHNKLSGELSE 303
                + L+ L ++ N     I   F N               +       + +      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 304 MIQNL 308
               L
Sbjct: 259 TFAGL 263

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 89.1 bits (221), Expect = 1e-19
 Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 21/237 (8%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
               L DL+ L+L+ N         F G L  L+ LNLS    L ++    F  L  + Y
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLS-YNLLGELYSSNFYGLPKVAY 342

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDW------FQVVAKLRSLKTLVL 191
           + L+ +++  +   +    L  L+ LDL    LT           F    KL +L  + L
Sbjct: 343 IDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401

Query: 192 RSCAL-----PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAF 246
            +  +        N   ++       ++ L L+ N   SS       + + ++  L L  
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGE 460

Query: 247 NSLRGSI-----PEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           N L+ +       + F+ +  L+ L+L  N L    P  F ++ +L  L L  N+L+
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.1 bits (208), Expect = 6e-18
 Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 25/242 (10%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLS-------CGTSLLKVPR 127
           + P+  KL+ L+ +D S+N        E        L + +L+             K   
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 128 PFQYLSGLVYLRLEN-----------SNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDW 176
           PF+ +  L  L +             SN  S      L     +      + N+      
Sbjct: 200 PFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 177 FQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 236
                   S++ L L    +  +N            ++ L+L+ N +  + +    F   
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETL---KDLKVLNLAYNKI--NKIADEAFYGL 313

Query: 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK 296
            N+ VL+L++N L       F  +  +  + L  N +     + F  +  L  L L  N 
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 297 LS 298
           L+
Sbjct: 374 LT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 42/234 (17%), Positives = 82/234 (35%), Gaps = 23/234 (9%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS-CGTSLLKVPRPFQYLS---- 133
               L  + ++DL  NH       +    L +L+ L+L     + +        +     
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391

Query: 134 ----------GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL 183
                         + L  + L +L  L +L  +  L+ L L+    +  S   Q  ++ 
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG-DQTPSEN 450

Query: 184 RSLKTLVLRSCALPPINPSFIWHFNLS--TSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241
            SL+ L L    L     + +        + ++ L L+ N L  +S+ P +F+    +  
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL--NSLPPGVFSHLTALRG 508

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
           L L  N L            +L+ L ++ N+L    P  F ++  L+       
Sbjct: 509 LSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 47/214 (21%), Positives = 76/214 (35%), Gaps = 18/214 (8%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC-----GTSLLKVPRPFQYLSG 134
           LL++  L+ L L+ N F      +       L  L L                 F+ LS 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L  L L ++ L SL      SHL++LR L L+   LT  S          +L+ L +   
Sbjct: 482 LQVLYLNHNYLNSL-PPGVFSHLTALRGLSLNSNRLTVLSHNDL----PANLEILDISRN 536

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN-LSRNILVLDLAFNSLRGSI 253
            L   NP          S+  LD++ N            N L+   + +      +    
Sbjct: 537 QLLAPNPDVF------VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590

Query: 254 PEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL 287
           P++F  + SL SL     + E  +     ++  +
Sbjct: 591 PDSFSGV-SLFSLSTEGCDEEEVLKSLKFSLFIV 623

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 7e-14
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 155 SHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRS-CALPPINPSFIWHFNLSTS 212
             L++   L LS+  +   ++  F     L  L+ L L S      I+      F    +
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFP---FLEQLQLLELGSQYTPLTIDKE---AFRNLPN 74

Query: 213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI--PEAFQHMVSLKSLHLTD 270
           +  LDL  + +    ++P  F    ++  L L F  L  ++     F+++ +L  L L+ 
Sbjct: 75  LRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 271 NELEG-GIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310
           N++    +   FG + SL  +    N++       ++ L G
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 13/155 (8%)

Query: 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLD 217
              R     + NLT      QV   L + + L+L    +  +  S    F     ++ L+
Sbjct: 4   FDGRIAFYRFCNLT------QVPQVLNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLE 54

Query: 218 LSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI 277
           L        ++    F    N+ +LDL  + +    P+AFQ +  L  L L    L   +
Sbjct: 55  LGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 278 --PKFFGNMCSLNRLFLPHNKLSG-ELSEMIQNLS 309
               +F N+ +L RL L  N++    L      L+
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 1e-21
 Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 16/217 (7%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLENS 143
           + R L+L  N      V  F   L  L  L LS    +  +    F  L+ L  L L ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKH-LRHLEILQLS-RNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSC-ALPPINP 201
            L ++ +     +LS L+ L L    +    S  F    ++ SL+ L L     L  I+ 
Sbjct: 123 RLTTIPN-GAFVYLSKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSYISE 178

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
                F   +++  L+L+  NL        L  L      LDL+ N L    P +FQ ++
Sbjct: 179 G---AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDE----LDLSGNHLSAIRPGSFQGLM 231

Query: 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            L+ L +  ++++      F N+ SL  + L HN L+
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 2e-21
 Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 16/220 (7%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
           +   L  L  L LS NH     +  F G L+ L  L L     L  +P   F YLS L  
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELF-DNRLTTIPNGAFVYLSKLKE 140

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN-LTK-SSDWFQVVAKLRSLKTLVLRSCA 195
           L L N+ + S+ S    + + SLR LDL  +  L+  S   F+    L +L+ L L  C 
Sbjct: 141 LWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCN 196

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE 255
           L  I      +      ++ LDLS N+L  S++ P  F    ++  L +  + ++     
Sbjct: 197 LREIP-----NLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249

Query: 256 AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
           AF ++ SL  ++L  N L       F  +  L R+ L HN
Sbjct: 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 42/168 (25%), Positives = 58/168 (34%), Gaps = 30/168 (17%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVY 137
           A + L  L+ L L NN     P   F   +  LR L+L     L  +    F+ LS L Y
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQ------------------ 178
           L L   NL  + +L   + L  L  LDLS  +L+      FQ                  
Sbjct: 190 LNLAMCNLREIPNL---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 179 ---VVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL 223
                  L+SL  + L    L  +       F     +E + L  N  
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDL---FTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH 267
            +ST+   L+L +N +    +    F   R++ +L L+ N +R     AF  + +L +L 
Sbjct: 61  GISTNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 268 LTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           L DN L       F  +  L  L+L +N + 
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLT 269
           S     +     NL    V P    +S N  +L+L  N ++     +F+H+  L+ L L+
Sbjct: 42  SNQFSKVICVRKNL--REV-PD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 270 DNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            N +       F  + +LN L L  N+L+
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLT 125

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 2e-21
 Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 30/237 (12%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
                  +L  L+H+ +         +P+ +   + L  L L+    L  +P     L+ 
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLA-RNPLRALPASIASLNR 151

Query: 135 LVYLRLENSN--------LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 186
           L  L +            L S  +      L +L+ L L +  +          A L++L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI---ANLQNL 208

Query: 187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNN----LPSSSVYPWLFNLSRNILVL 242
           K+L +R+  L  + P+     +L   +E LDL         P           +  +  L
Sbjct: 209 KSLKIRNSPLSALGPAI---HHL-PKLEELDLRGCTALRNYPPI-----FGGRA-PLKRL 258

Query: 243 DLA-FNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            L   ++L  ++P     +  L+ L L        +P     + +   + +P +  +
Sbjct: 259 ILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 22/239 (9%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLR 139
               ++ +    +      +       +      L L     L + P     LS L ++ 
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-VPLPQFPDQAFRLSHLQHMT 110

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC----A 195
           ++ + L  L   + +   + L  L L+   L          A L  L+ L +R+C     
Sbjct: 111 IDAAGLMEL--PDTMQQFAGLETLTLARNPLRALPASI---ASLNRLRELSIRACPELTE 165

Query: 196 LPPI--NPSFIWHFNLSTSIETLDLSDNN---LPSSSVYPWLFNLSRNILVLDLAFNSLR 250
           LP    +           ++++L L       LP+S     + NL  N+  L +  + L 
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-----IANLQ-NLKSLKIRNSPLS 219

Query: 251 GSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
            ++  A  H+  L+ L L         P  FG    L RL L        L   I  L+
Sbjct: 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 31/251 (12%), Positives = 73/251 (29%), Gaps = 38/251 (15%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL 145
             +L    +    + +  +   LS+ +    +   +           +           L
Sbjct: 14  RENLYFQGS----TALRPYHDVLSQWQRHYNAD-RNRWHSAWRQANSNNPQIETRTGRAL 68

Query: 146 FSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIW 205
            +   L   +       L+L  + L +  D      +L  L+ + + +  L  + P  + 
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPD---QAFRLSHLQHMTIDAAGLMEL-PDTMQ 124

Query: 206 H------FNLS--------------TSIETLDLSDNN----LPSS---SVYPWLFNLSRN 238
                    L+                +  L +        LP     +          N
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           +  L L +  +R S+P +  ++ +LKSL + ++ L   +     ++  L  L L      
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242

Query: 299 GELSEMIQNLS 309
                +    +
Sbjct: 243 RNYPPIFGGRA 253

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 15/161 (9%)

Query: 150 SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL 209
           S     H S   +L        +   +  V+++ +                    W    
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRP--YHDVLSQWQRHYNADRNRWHSA-------WRQAN 54

Query: 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNIL-VLDLAFNSLRGSIPEAFQHMVSLKSLHL 268
           S + +    +   L +++    L + ++     L+L    L    P+    +  L+ + +
Sbjct: 55  SNNPQIETRTGRALKATA--DLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 269 TDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
               L   +P        L  L L  N L   L   I +L+
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN 150

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 25/232 (10%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
           A    H ++ L +  N     P P    ++  L  L L     L  +PR  F     L  
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTT 145

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L + N+NL  +   +     +SL++L LS   LT         + + SL    +    L 
Sbjct: 146 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVSYNLLS 199

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            +            ++E LD S N++  + V   +      + +L L  N+L        
Sbjct: 200 TLAIP--------IAVEELDASHNSI--NVVRGPVN---VELTILKLQHNNLT-DTA-WL 244

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
            +   L  + L+ NELE  +   F  M  L RL++ +N+L   L+   Q + 
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 26/193 (13%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLEN 142
           +  L H ++S N          +     +  L+ S   S+  V  P      L  L+L++
Sbjct: 185 IPSLFHANVSYNLL------STLAIPIAVEELDAS-HNSINVVRGPV--NVELTILKLQH 235

Query: 143 SNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           +NL       WL +   L  +DLSY  L K     F    K++ L+ L + +  L  +N 
Sbjct: 236 NNLTDTA---WLLNYPGLVEVDLSYNELEKIMYHPFV---KMQRLERLYISNNRLVALNL 289

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
                  +  +++ LDLS N+L    V          +  L L  NS+  ++        
Sbjct: 290 YG---QPI-PTLKVLDLSHNHL--LHVERNQPQFD-RLENLYLDHNSIV-TLK--LSTHH 339

Query: 262 SLKSLHLTDNELE 274
           +LK+L L+ N+ +
Sbjct: 340 TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 10/179 (5%)

Query: 121 SLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQV 179
               +    QY      + ++          E +  L++ + +      + K  +     
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLD- 66

Query: 180 VAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 239
               R ++ L L    +  I+      F  + +I+ L +  N +    + P +F     +
Sbjct: 67  --SFRQVELLNLNDLQIEEIDTY---AFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLL 119

Query: 240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            VL L  N L       F +   L +L +++N LE      F    SL  L L  N+L+
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 22/185 (11%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLE 141
             +L  L L +N+   +     +     L  ++LS    L K+   PF  +  L  L + 
Sbjct: 225 NVELTILKLQHNNL--TDTAWLLN-YPGLVEVDLS-YNELEKIMYHPFVKMQRLERLYIS 280

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPIN 200
           N+ L +L        + +L+ LDLS+ +L     +  Q       L+ L L   ++  + 
Sbjct: 281 NNRLVALNLY--GQPIPTLKVLDLSHNHLLHVERNQPQ----FDRLENLYLDHNSIVTLK 334

Query: 201 PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHM 260
                  +   +++ L LS N+   +S+     N++R      +        I    +H 
Sbjct: 335 ------LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR----PAVDDADQHCKIDYQLEHG 384

Query: 261 VSLKS 265
           +  K 
Sbjct: 385 LCCKE 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 1/102 (0%)

Query: 198 PINPSFI-WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA 256
           P  P +     NL       D+  +       + +      N  ++    +++R      
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 257 FQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
                 ++ L+L D ++E      F    ++ +L++  N + 
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.0 bits (223), Expect = 1e-20
 Identities = 54/253 (21%), Positives = 92/253 (36%), Gaps = 14/253 (5%)

Query: 54  VKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG----SLS 109
           +K L+L+R     AR        +  +L +  L+ L L N    G+  P  +      L+
Sbjct: 65  IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124

Query: 110 RLRYLNLSCGTSLLKVPRPFQYLS-GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYI 168
            L   N+S  T    +    Q+L  GL  L +  ++  +  S E +    +L  LDLS  
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDN 183

Query: 169 NLT--KSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSS 226
                +         K  +L+ L LR+  +   +            ++ LDLS N+L   
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL-RD 242

Query: 227 SVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCS 286
           +      +    +  L+L+F  L+            L  L L+ N L+   P     +  
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLD-RNP-SPDELPQ 297

Query: 287 LNRLFLPHNKLSG 299
           +  L L  N    
Sbjct: 298 VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 9e-13
 Identities = 47/232 (20%), Positives = 72/232 (31%), Gaps = 14/232 (6%)

Query: 88  HLDLSNNHFGGSPVPEFIGSLS--RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL 145
            L   +         + I SLS  RL        + +L        +SGL  L LEN  +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 146 FSLGSLEWLS-HLSSLRHLDLSYINLTKSSDWFQVV--AKLRSLKTLVLRSCALPPINPS 202
                   L      L  L+L  ++      W   +       LK L +        +  
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 203 FIWHFNLSTSIETLDLSDNNLPS-----SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            +  F    ++ TLDLSDN         S++ P  F   + + + +    +  G      
Sbjct: 168 QVRVF---PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 258 QHMVSLKSLHLTDNELEGGIPK-FFGNMCSLNRLFLPHNKLSGELSEMIQNL 308
              V L+ L L+ N L              LN L L    L      +   L
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 5e-12
 Identities = 37/222 (16%), Positives = 63/222 (28%), Gaps = 21/222 (9%)

Query: 103 EFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLEN----SNLFSLGSLEWLSHL- 157
           E  G    L YL     T         Q+   +  L L+     +       L     + 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEA----DLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL 92

Query: 158 --SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFN-LSTSIE 214
             S L+ L L  + +T ++    + A    L  L LR+ +    +         L   ++
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 215 TLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI-------PEAFQHMVSLKSLH 267
            L ++  +    +       +   +  LDL+ N   G         P  F  +  L   +
Sbjct: 153 VLSIAQAHS--LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 268 LTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
                  G           L  L L HN L         +  
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 47  CSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG 106
           C  K   ++VL LR     NA  +   G  S        L+ LDLS+N    +       
Sbjct: 196 CPLKFPTLQVLALR-----NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS 166
             S+L  LNLS  T L +VP+     + L  L L  +    L        L  + +L L 
Sbjct: 251 WPSQLNSLNLS-FTGLKQVPKGL--PAKLSVLDLSYNR---LDRNPSPDELPQVGNLSLK 304

Query: 167 YINLTKS 173
                 S
Sbjct: 305 GNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 34/182 (18%), Positives = 50/182 (27%), Gaps = 42/182 (23%)

Query: 77  SPALLKLHDLRHLDLSNNHF-GGSPVPEFI--GSLSRLRYLNLSC--GTSLLKV-PRPFQ 130
              +     L  LDLS+N   G   +   +       L+ L L      +   V      
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
               L  L L +++L            S L  L+LS+  L +                  
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ------------------ 267

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
                +P           L   +  LDLS N L  +     L  +      L L  N   
Sbjct: 268 -----VPK---------GLPAKLSVLDLSYNRLDRNPSPDELPQVGN----LSLKGNPFL 309

Query: 251 GS 252
            S
Sbjct: 310 DS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 151 LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLS 210
           +E      SL +L L  ++       F  + K  SLK L +R+  +P             
Sbjct: 36  VELYGGGRSLEYL-LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG---SIPEAFQHMV-SLKSL 266
           + ++ L L +  +  ++  P L     ++ +L+L   S       + E  Q +   LK L
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS 302
            +          +      +L+ L L  N   GE  
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.7 bits (228), Expect = 1e-20
 Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
               L  L++L+L  N +    V     +L+ L+ L +    +  ++ R  F  L+ L  
Sbjct: 93  WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L ++  +L +    + L  +  + HL L         +       L S++ L LR   L 
Sbjct: 153 LEIKALSLRNY-QSQSLKSIRDIHHLTLHLSESAFLLE--IFADILSSVRYLELRDTNLA 209

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL------VLDLAFNSLRG 251
               S +    +S+ ++ L    + L   S +  L  L R IL        D   N L  
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDES-FNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 252 SIPE--------AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSE 303
             P              V+++ LH+    L   +   +  +  + R+ + ++K+      
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 304 MIQNLS 309
             Q+L 
Sbjct: 329 FSQHLK 334

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 30/237 (12%)

Query: 81  LKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLR 139
           ++   +R L +   +            L +++ + +   + +  VP    Q+L  L +L 
Sbjct: 283 VETVTIRRLHIPQFYLFYDL-STVYSLLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLD 340

Query: 140 LENSNLFSL--GSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L  + +      +        SL+ L LS  +L       +++  L++L +L +      
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

Query: 198 PINPSFIWHFNLS-----------------TSIETLDLSDNNLPSSSVYPWLFNLSRNIL 240
           P+  S  W   +                   ++E LD+S+NNL S S++  L  L     
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF--LPRLQE--- 455

Query: 241 VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
            L ++ N L+ ++P+A      L  + ++ N+L+      F  + SL +++L  N  
Sbjct: 456 -LYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 8e-19
 Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 11/227 (4%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS-CGTSLLKVPRPFQYLSGLVYLRLENS 143
            ++ LDLS N          + + + L+ L L     + ++    F  L  L +L L ++
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDN 84

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL-RSCALPPINPS 202
           +L SL S  W   LSSL++L+L             +   L +L+TL +        I   
Sbjct: 85  HLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 203 FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVS 262
               F   TS+  L++   +L   +         R+I  L L  +     +      + S
Sbjct: 143 D---FAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 263 LKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           ++ L L D  L              + +     + S    E    L 
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.0 bits (208), Expect = 5e-18
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 9/221 (4%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVY 137
            L    +L+ L L ++        +   SL  L +L+LS    L  +    F  LS L Y
Sbjct: 45  DLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKY 102

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L L  +   +LG      +L++L+ L +  +            A L SL  L +++ +L 
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLR 161

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
                          I  L L  +    + +     ++  ++  L+L   +L        
Sbjct: 162 NYQSQ---SLKSIRDIHHLTLHLSES--AFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
                   +            + F  +  L R  L  +++ 
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.2 bits (206), Expect = 8e-18
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 14/213 (6%)

Query: 89  LDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENSNLFS 147
            D  +  F  + +P  +   + ++ L+LS    +  +     +  + L  L L++S + +
Sbjct: 10  CDGRSRSF--TSIPSGL--TAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 148 LGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWH 206
           +   +    L SL HLDLS  +L+  SS WF     L SLK L L       +  + +  
Sbjct: 65  IEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFG---PLSSLKYLNLMGNPYQTLGVTSL-- 118

Query: 207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL 266
           F   T+++TL + +     S +    F    ++  L++   SLR    ++ + +  +  L
Sbjct: 119 FPNLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
            L  +E    +  F   + S+  L L    L+ 
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 37/196 (18%), Positives = 59/196 (30%), Gaps = 36/196 (18%)

Query: 77  SPALLKLHDLRHLDLSNNHFGGSPV--PEFIGSLSRLRYLNLS--CGTSLLKVPRPFQYL 132
                 L  L  LDLS N      +      G+   L+ L LS     S+ K       L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 133 SGLVYLRLENSNL-------FSLGSLEWL------------SHLSSLRHLDLSYINLTKS 173
             L  L +  +              + +L                +L  LD+S  NL   
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-- 444

Query: 174 SDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLF 233
                    L  L+ L +    L       +   +L   +  + +S N L   SV   +F
Sbjct: 445 ----SFSLFLPRLQELYISRNKL-----KTLPDASLFPVLLVMKISRNQL--KSVPDGIF 493

Query: 234 NLSRNILVLDLAFNSL 249
           +   ++  + L  N  
Sbjct: 494 DRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDN 271
           +    D    +   +S+ P    L+  +  LDL+FN +        +   +L+ L L  +
Sbjct: 6   ASGVCDGRSRSF--TSI-PS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 272 ELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG 310
            +       F ++ SL  L L  N LS   S     LS 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 40/149 (26%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
            +  +      +R L+LS+                            +            
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGI-----------------------RVV-----KTCIPQT 432

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L  L + N+NL S         L  L+ L +S   L          +    L  + +   
Sbjct: 433 LEVLDVSNNNLDSFS-----LFLPRLQELYISRNKLKT----LPDASLFPVLLVMKISRN 483

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNL 223
            L  +       F+  TS++ + L  N  
Sbjct: 484 QLKSVPDGI---FDRLTSLQKIWLHTNPW 509

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.4 bits (225), Expect = 3e-20
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 26/225 (11%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
           T    L  L +L  L+LS+N          +  L+ L+ L+       +   +P   L+ 
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQ---VTDLKPLANLTT 178

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L  L + ++    +  +  L+ L++L  L  +   ++  +     +  L +L  L L   
Sbjct: 179 LERLDISSNK---VSDISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGN 231

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
            L   +   +      T++  LDL++N +   S    L  L+  +  L L  N +    P
Sbjct: 232 QL--KDIGTLASL---TNLTDLDLANNQI---SNLAPLSGLT-KLTELKLGANQISNISP 282

Query: 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
                + +L +L L +N+LE        N+ +L  L L  N +S 
Sbjct: 283 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.1 bits (206), Expect = 9e-18
 Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 38/239 (15%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
                L +     L   +   +        L ++  L        +K     +YL+ L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADR--LGIKSIDGVEYLNNLTQ 72

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           +   N+    L  +  L +L+ L  + ++   +   +     +A L +L  L L +  + 
Sbjct: 73  INFSNNQ---LTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQI- 124

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL-----FNLSRNIL------------ 240
               + I      T++  L+LS N +   S    L      +    +             
Sbjct: 125 ----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 180

Query: 241 VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
            LD++ N +  S       + +L+SL  T+N++    P   G + +L+ L L  N+L  
Sbjct: 181 RLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 23/221 (10%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             L  L +L  L L+ N          + SL+ L  L+L+    +  +  P   L+ L  
Sbjct: 215 TPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLA-NNQISNLA-PLSGLTKLTE 269

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L+L  + +    ++  L+ L++L +L+L+   L   S     ++ L++L  L L    + 
Sbjct: 270 LKLGANQI---SNISPLAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNIS 322

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            I+P      +  T ++ L   +N +   S    L NL+ NI  L    N +    P   
Sbjct: 323 DISP-----VSSLTKLQRLFFYNNKV---SDVSSLANLT-NINWLSAGHNQISDLTP--L 371

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            ++  +  L L D         +  N+   N +      L 
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 147 SLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWH 206
            +  +   + L+      L   N+T +         L  + TL      +  I+      
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSIDG----- 63

Query: 207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL 266
                ++  ++ S+N L   +    L  L      + +  N +    P    ++ +L  L
Sbjct: 64  VEYLNNLTQINFSNNQLTDITPLKNLTKLV----DILMNNNQIADITP--LANLTNLTGL 117

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
            L +N++    P    N+ +LNRL L  N +S 
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 31/189 (16%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             L  L  L +L+L+ N          I +L  L YL L    ++  +  P   L+ L  
Sbjct: 281 SPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLY-FNNISDIS-PVSSLTKLQR 335

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L   N+ +     +  L++L+++  L   +  ++  +     +A L  +  L L   A  
Sbjct: 336 LFFYNNKV---SDVSSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQAWT 388

Query: 198 PINPSFIWHFNL-------------------STSIETLDLSDNNLPSSSVYPWLFNLSRN 238
               ++  + ++                     S    D++ N    ++   + F+    
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVT 448

Query: 239 ILVLDLAFN 247
           I      F+
Sbjct: 449 IGKGTTTFS 457

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 6e-20
 Identities = 51/214 (23%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLE-N 142
             + + L  N     P   F      L  L L     L ++    F  L+ L  L L  N
Sbjct: 33  ASQRIFLHGNRISHVPAASFRA-CRNLTILWLH-SNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 143 SNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           + L S+        L  L  L L    L +     F+    L +L+ L L+  AL  +  
Sbjct: 91  AQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQALPD 146

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
                F    ++  L L  N +  SSV    F    ++  L L  N +    P AF+ + 
Sbjct: 147 D---TFRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
            L +L+L  N L     +    + +L  L L  N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 14/196 (7%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 137
           +     +L  L L +N         F G L+ L  L+LS    L  V    F  L  L  
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCAL 196
           L L+   L  LG       L++L++L L    L     D F+    L +L  L L    +
Sbjct: 110 LHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFR---DLGNLTHLFLHGNRI 165

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE- 255
             +       F    S++ L L  N +  + V+P  F     ++ L L  N+L  ++P  
Sbjct: 166 SSVPER---AFRGLHSLDRLLLHQNRV--AHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 219

Query: 256 AFQHMVSLKSLHLTDN 271
           A   + +L+ L L DN
Sbjct: 220 ALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 119 GTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWF 177
              L  VP      +    + L  + +  + +        +L  L L    L +  +  F
Sbjct: 20  QQGLQAVPVGI--PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAF 76

Query: 178 QVVAKLRSLKTLVLRS-CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 236
                L  L+ L L     L  ++P+    F+    + TL L    L    + P LF   
Sbjct: 77  T---GLALLEQLDLSDNAQLRSVDPA---TFHGLGRLHTLHLDRCGL--QELGPGLFRGL 128

Query: 237 RNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
             +  L L  N+L+ ++P+  F+ + +L  L L  N +     + F  + SL+RL L  N
Sbjct: 129 AALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 296 KLS 298
           +++
Sbjct: 188 RVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 13/69 (18%), Positives = 22/69 (31%)

Query: 234 NLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP 293
            +      + L  N +      +F+   +L  L L  N L       F  +  L +L L 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 294 HNKLSGELS 302
            N     + 
Sbjct: 89  DNAQLRSVD 97

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.5 bits (222), Expect = 6e-20
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 9/228 (3%)

Query: 68  RGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR 127
           +G++       +   L  L    + ++ FG      +    S +   N +   + +    
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI-FSNMNIKNFTVSGTRMVHML 318

Query: 128 PFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187
               +S  ++L   N+ L      E   HL+ L  L L    L + S   ++  +++SL+
Sbjct: 319 CPSKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247
            L +   ++           + + S+ +L++S N L  +        L   I VLDL  N
Sbjct: 378 QLDISQNSVSYDEKKGD--CSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSN 431

Query: 248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
            ++ SIP+    + +L+ L++  N+L+      F  + SL +++L  N
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 47/225 (20%), Positives = 85/225 (37%), Gaps = 12/225 (5%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIG----SLSRLRYLNLSCGTSLLKVPRPFQYLS 133
             L+    + +  +SN    G            SL  L    +            ++  S
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
            +       S    +  L   S +S   HLD S   LT +   F+    L  L+TL+L+ 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTV--FENCGHLTELETLILQM 357

Query: 194 CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI 253
             L  +            S++ LD+S N++ S        + ++++L L+++ N L  +I
Sbjct: 358 NQLKEL-SKIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 254 PEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
                    +K L L  N+++  IPK    + +L  L +  N+L 
Sbjct: 416 FRCLPP--RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 16/240 (6%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLE 141
            +  L+ L LS  H   S V            L L             + L       L 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG---ETYGEKEDPEGLQDFNTESL- 168

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSD---------WFQVVAKLRSLKTLVLR 192
           +    +     ++  +S     +L   N+    +             +     L  L L 
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 193 SCALPPINPSFIWHFNLSTSIETLDLSDNNL---PSSSVYPWLFNLSRNILVLDLAFNSL 249
           +      +   I      T++    +S+  L        + +     + + +  +  +  
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 250 RGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
                  ++   ++   + T +            +     L   +N L+  + E   +L+
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 36/237 (15%), Positives = 70/237 (29%), Gaps = 19/237 (8%)

Query: 77  SPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV 136
             ++L +  L    +           E    L      +L       K       +S   
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 137 YLRLENSNL----------FSLGSLEWLSHLSSLRHLDLSYINLT-KSSDWFQVVAKLRS 185
              LE SN+          + L  L  L     L +L L+ I  T  S      +    +
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 186 LKTLVLRSCAL--PPINPSFIWHFNLSTSIETLDLSDNNL--PSSSVYPWLFNLSRNILV 241
           +    + +  L        F +      ++    +  +    P S +Y    N++    +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN----I 304

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            +   +  R         +     L  ++N L   + +  G++  L  L L  N+L 
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 12/224 (5%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 138
            +L L  LR L +S+N      +  F      L YL+LS    L+K+         L +L
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLS-HNKLVKIS--CHPTVNLKHL 95

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK-TLVLRSCALP 197
            L  +   +L   +   ++S L+ L LS  +L KSS     +A L   K  LVL      
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGE 153

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW---LFNLSRNILVLDLAFNSLRGSIP 254
             +P  +   + +T    +    N      +      + NL  + +   L  N     + 
Sbjct: 154 KEDPEGL--QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
              +   + K  +LT N +E     F   +  +    + +  +S
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 7e-09
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 18/242 (7%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLENS 143
               L++S N+       +   SLS+LR L +S    +  +    F++   L YL L ++
Sbjct: 22  KTTILNISQNYISELWTSDI-LSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF 203
            L  +          +L+HLDLS+ N   +    +    +  LK L L +  L   +   
Sbjct: 80  KLVKISC----HPTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSL 263
           I H N     + L +             L + +   L +    N     I +     V+ 
Sbjct: 135 IAHLN---ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 264 KSLHLTDNELEGGIPKFFGNMCS-------LNRLFLPHNKLSGELSEMIQNLSGGCTMNS 316
             L      LE     +F ++ +       L+ L L + + +      I  L    T+  
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 317 LE 318
             
Sbjct: 252 FS 253

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLD 217
                L++S   +++       +  L  L+ L++    +  ++ S    F  +  +E LD
Sbjct: 21  QKTTILNISQNYISELWT--SDILSLSKLRILIISHNRIQYLDISV---FKFNQELEYLD 75

Query: 218 LSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA--FQHMVSLKSLHLTDNELEG 275
           LS N L   S      + + N+  LDL+FN+   ++P    F +M  LK L L+   LE 
Sbjct: 76  LSHNKLVKIS-----CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEK 129

Query: 276 GIPKFFGNMCSLNRLFLPHNKLSGELS 302
                  ++     L +       +  
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKED 156

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 24/133 (18%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH 267
           +LS     L++S N +  S ++         + +L ++ N ++      F+    L+ L 
Sbjct: 18  DLSQKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75

Query: 268 LTDNELEG----------------------GIPKFFGNMCSLNRLFLPHNKLSGELSEMI 305
           L+ N+L                         I K FGNM  L  L L    L       I
Sbjct: 76  LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 306 QNLSGGCTMNSLE 318
            +L+    +  L 
Sbjct: 136 AHLNISKVLLVLG 148

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 215 TLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELE 274
            +D S N L    V P   +LS+   +L+++ N +          +  L+ L ++ N ++
Sbjct: 4   LVDRSKNGL--IHV-PK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 275 GGIPKFFGNMCSLNRLFLPHNKLS 298
                 F     L  L L HNKL 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLV 82

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 33/148 (22%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
           I+    ++  L+ LD+S N                L  LN+S                  
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS------------------ 407

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA 195
                  SN+ +      L     ++ LDL    +       + V KL +L+ L + S  
Sbjct: 408 -------SNILTDTIFRCL--PPRIKVLDLHSNKIKSIP---KQVVKLEALQELNVASNQ 455

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNL 223
           L  +       F+  TS++ + L  N  
Sbjct: 456 LKSVPDGI---FDRLTSLQKIWLHTNPW 480

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 6e-20
 Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 25/232 (10%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
           A    H ++ L +  N     P P    ++  L  L L     L  +PR  F     L  
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTT 151

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L + N+NL  +   +     +SL++L LS   LT         + + SL    +    L 
Sbjct: 152 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVSYNLLS 205

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            +            ++E LD S N++  + V   +      + +L L  N+L        
Sbjct: 206 TLAIP--------IAVEELDASHNSI--NVVRGPVN---VELTILKLQHNNLT-DTA-WL 250

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
            +   L  + L+ NELE  +   F  M  L RL++ +N+L   L+   Q + 
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.0 bits (210), Expect = 3e-18
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 34/237 (14%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
               +  L  L L  N     P   F     +L  L++S   +L ++    FQ  + L  
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHN-TPKLTTLSMS-NNNLERIEDDTFQATTSLQN 175

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L+L ++ L  +     LS + SL H ++SY  L+        +A   +++ L     ++ 
Sbjct: 176 LQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNSIN 224

Query: 198 PINPSF---IWHFNLS-------------TSIETLDLSDNNLPSSSVYPWLFNLSRNILV 241
            +       +    L                +  +DLS N L    +    F   + +  
Sbjct: 225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLER 282

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           L ++ N L  ++    Q + +LK L L+ N L   + +       L  L+L HN + 
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 5e-14
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 26/193 (13%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLEN 142
           +  L H ++S N          +     +  L+ S   S+  V  P      L  L+L++
Sbjct: 191 IPSLFHANVSYNLL------STLAIPIAVEELDAS-HNSINVVRGPV--NVELTILKLQH 241

Query: 143 SNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           +NL       WL +   L  +DLSY  L K     F    K++ L+ L + +  L  +N 
Sbjct: 242 NNLTDTA---WLLNYPGLVEVDLSYNELEKIMYHPFV---KMQRLERLYISNNRLVALNL 295

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
                  +  +++ LDLS N+L    V          +  L L  NS+  ++        
Sbjct: 296 YG---QPI-PTLKVLDLSHNHL--LHVERNQPQFD-RLENLYLDHNSIV-TLK--LSTHH 345

Query: 262 SLKSLHLTDNELE 274
           +LK+L L+ N+ +
Sbjct: 346 TLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLE 141
             +L  L L +N+   +     +     L  ++LS    L K+   PF  +  L  L + 
Sbjct: 231 NVELTILKLQHNNL--TDTAWLLN-YPGLVEVDLS-YNELEKIMYHPFVKMQRLERLYIS 286

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           N+ L +L        + +L+ LDLS+ +L           +   L+ L L   ++  +  
Sbjct: 287 NNRLVALNLY--GQPIPTLKVLDLSHNHLLHVERNQ---PQFDRLENLYLDHNSIVTL-- 339

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 238
                 +   +++ L LS N+   +S+     N++R 
Sbjct: 340 ----KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 372

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTD 270
            + + +   ++ +    +   L +  R + +L+L    +      AF +  +++ L++  
Sbjct: 51  NNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 271 NELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           N +    P  F N+  L  L L  N LS
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 15/115 (13%), Positives = 37/115 (32%)

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
             P          NL       D+  +       + +      N  ++    +++R    
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
                   ++ L+L D ++E      F    ++ +L++  N +      + QN+ 
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 20/231 (8%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVY 137
            L +  +L+ L L++N         F   L  L +L+LS    L  +    F+ LS L +
Sbjct: 71  DLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLS-YNYLSNLSSSWFKPLSSLTF 128

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSY-INLTKSSDWFQVVAKLRSLKTLVLRSCAL 196
           L L  +   +LG     SHL+ L+ L +      TK     +  A L  L+ L + +  L
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAGLTFLEELEIDASDL 186

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL--------AFNS 248
               P          ++  L L         +     +++ ++  L+L         F+ 
Sbjct: 187 QSYEPK---SLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 249 LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
           L      +     + +++ +TD  L   + K    +  L  L    N+L  
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 16/201 (7%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY 137
               L  L  L+L  N +           L++L+ L +    +  K+  + F  L+ L  
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCAL 196
           L ++ S+L S    + L  + ++ HL L           +        S++ L LR   L
Sbjct: 179 LEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLEIFVD---VTSSVECLELRDTDL 234

Query: 197 PPINPSFI-----WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
              + S +            +   + ++D +L        L N    +L L+ + N L+ 
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ---VMKLLNQISGLLELEFSRNQLK- 290

Query: 252 SIPE-AFQHMVSLKSLHLTDN 271
           S+P+  F  + SL+ + L  N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 45/241 (18%), Positives = 91/241 (37%), Gaps = 14/241 (5%)

Query: 71  VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PF 129
             + + + A L          S+     + +P  +     ++ L+LS    +  +     
Sbjct: 18  SKEESSNQASLSCDRNGICKGSSGSL--NSIPSGL--TEAVKSLDLS-NNRITYISNSDL 72

Query: 130 QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKT 188
           Q    L  L L ++ + ++   +  S L SL HLDLSY  L+  SS WF+    L SL  
Sbjct: 73  QRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFK---PLSSLTF 128

Query: 189 LVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS 248
           L L       +  + +  F+  T ++ L + + +   + +    F     +  L++  + 
Sbjct: 129 LNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDT-FTKIQRKDFAGLTFLEELEIDASD 185

Query: 249 LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNL 308
           L+   P++ + + ++  L L   +    +  F     S+  L L    L       +   
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 309 S 309
            
Sbjct: 246 E 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 16/153 (10%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVY 137
               L  L  L++  +            S+  + +L L      + +        S +  
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILH-MKQHILLLEIFVDVTSSVEC 226

Query: 138 LRLENSNL-------FSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
           L L +++L        S G    L    + R++ ++  +L +         ++  L  L 
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN---QISGLLELE 283

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNL 223
                L  +       F+  TS++ + L  N  
Sbjct: 284 FSRNQLKSVPDGI---FDRLTSLQKIWLHTNPW 313

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 19/218 (8%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENS 143
            + ++DLS N         F   L  L++L +   T  L +    F+ LS L+ L+L+ +
Sbjct: 31  HVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKS---SDWFQVVAKLRSLKTLVLRSCALPPIN 200
               L      + L++L  L L+  NL  +    ++F+    L SL+ LVLR   +  I 
Sbjct: 90  QFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK---PLTSLEMLVLRDNNIKKIQ 145

Query: 201 PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR--------GS 252
           P+    F        LDL+ N + S      L    ++  +L L+  +L+          
Sbjct: 146 PASF--FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 253 IPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRL 290
                    S+ +L L+ N  +  + K F +  +  ++
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 2e-15
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 24/234 (10%)

Query: 53  HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLR 112
           H  +L L     ++     L         K   +  LDLS N F  S    F  +++  +
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 113 YLNL----------SCGTSLLKVPRPFQY----LSGLVYLRLENSNLFSLGSLEWLSHLS 158
             +L          S G +  K P  F +     SG+    L  S +F+L      SH +
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFT 299

Query: 159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDL 218
            L  L L+   + K  D       L  L  L L    L  I  S +  F     +E LDL
Sbjct: 300 DLEQLTLAQNEINKIDD--NAFWGLTHLLKLNLSQNFLGSI-DSRM--FENLDKLEVLDL 354

Query: 219 SDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDN 271
           S N++   ++    F    N+  L L  N L+ S+P+  F  + SL+ + L  N
Sbjct: 355 SYNHI--RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 9e-15
 Identities = 49/237 (20%), Positives = 90/237 (37%), Gaps = 23/237 (9%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS-------CGTSLLKVPRPFQYLSG 134
            L  L  L L +N+        F  ++ R   L+L+       C   LL        L  
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 135 LVYLRLE--NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKS-SDWFQVVAKLRSLKTLVL 191
           L  + L+  N               +S+  LDLS     +S +  F        +++L+L
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 192 RSCALPPIN---------PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVL 242
            +      +          +F +    ++ ++T DLS + +   ++   +F+   ++  L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQL 304

Query: 243 DLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            LA N +   I + AF  +  L  L+L+ N L     + F N+  L  L L +N + 
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSL 266
            L   +  +DLS N++  + +    F+  +++  L +   +    I    F+ + SL  L
Sbjct: 27  ELPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            L  N+        F  + +L  L L    L 
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 81  LKLHDLRHLDLSNNHFGGSPVPEFI-GSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYL 138
           L+   ++  DLS +      + + +    + L  L L+    + K+    F  L+ L+ L
Sbjct: 272 LEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKL 328

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALP 197
            L  + L S+ S     +L  L  LDLSY ++       F     L +LK L L +  L 
Sbjct: 329 NLSQNFLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQSFL---GLPNLKELALDTNQLK 384

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNL 223
            +       F+  TS++ + L  N  
Sbjct: 385 SVPDGI---FDRLTSLQKIWLHTNPW 407

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.1 bits (200), Expect = 5e-17
 Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 13/235 (5%)

Query: 63  DDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSL 122
            +     ++ +   + +   L  L    + N  F  S    +    + +    LS   + 
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY-SVFAEMNIKMLSISDTP 342

Query: 123 LKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 182
                     S   +L    +        +  S L  L+ L L    L        +   
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN-LSRNILV 241
           + SL+TL +   +L             + SI  L+LS N L  S     +F  L   + V
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRT--CAWAESILVLNLSSNMLTGS-----VFRCLPPKVKV 454

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPK-FFGNMCSLNRLFLPHN 295
           LDL  N +  SIP+   H+ +L+ L++  N+L+  +P   F  + SL  ++L  N
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 12/222 (5%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIG----SLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
                 + +L++ N         E       +L  L   ++     L      +   + +
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA 195
               L  S+   +  +      SS   L+ +    T S   FQ  + L+ L+TL+L+   
Sbjct: 332 NIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDS--VFQGCSTLKRLQTLILQRNG 388

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE 255
           L       +   N+ +S+ETLD+S N+L S   Y      + +ILVL+L+ N L GS+  
Sbjct: 389 LKNFFKVALMTKNM-SSLETLDVSLNSLNSH-AYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 256 AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
                  +K L L +N +   IPK   ++ +L  L +  N+L
Sbjct: 447 CLPP--KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.6 bits (165), Expect = 1e-12
 Identities = 39/260 (15%), Positives = 85/260 (32%), Gaps = 35/260 (13%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPF------------ 129
            +  LRHLDLS N F   PV +  G+L++L +L LS      ++                
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS-AAKFRQLDLLPVAHLHLSCILLD 177

Query: 130 ---QYLSGLVYLRLENSNLFSL---------------GSLEWLSHLSSLRHLDLSYINLT 171
               ++ G     L+  N   L                S+  L HL  L ++ L+  N  
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQ 236

Query: 172 KSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL---PSSSV 228
           +   +   + +  +L  + L+           ++ F     +E L++ +  +        
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 229 YPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLN 288
           + +     +++++  +       S    +     +    L+ ++          +  S  
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 289 RLFLPHNKLSGELSEMIQNL 308
            L    N  +  + +    L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTL 376

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 49/226 (21%), Positives = 83/226 (36%), Gaps = 19/226 (8%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENS 143
             + L LS N      +P+    LS LR L LS    +  +    F +   L YL + ++
Sbjct: 53  RTKALSLSQNSISELRMPDI-SFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF 203
            L ++        ++SLRHLDLS+ N        +    L  L  L L +     ++   
Sbjct: 111 RLQNISC----CPMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSL 263
           + H +LS     LDL   ++              N  VL L F+       +    + +L
Sbjct: 166 VAHLHLSCI--LLDLVSYHIKG---GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
             L L++ +L         N   L        +    L+  +Q++ 
Sbjct: 221 GHLQLSNIKLN------DENCQRLMTFLSELTRGPTLLNVTLQHIE 260

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 37/246 (15%), Positives = 79/246 (32%), Gaps = 35/246 (14%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLR 139
            L +LR L LS+N         F+     L YL++S     ++         ++ L +L 
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQNI-----SCCPMASLRHLD 127

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLS--------------------YINLTKSSDWFQV 179
           L  ++   L   +   +L+ L  L LS                     ++L         
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 180 VAKLRSLKTLVLRSCALPPINPSFIWH--FNLSTSIETLDLSDNNLPSSSVYPWLFNLSR 237
              L+   T VL     P    S   +   N    ++  ++  N+     +  +L  L+R
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 238 NILVLDLAFNSLRGSIPEAFQHM-----VSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292
              +L++    +  +   + +         ++ L++ +  +   I +            L
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 293 PHNKLS 298
               + 
Sbjct: 308 MIEHVK 313

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 11/94 (11%)

Query: 208 NLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLK 264
           +L    + L LS N++         +L  L     VL L+ N +R S+    F     L+
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELR----VLRLSHNRIR-SLDFHVFLFNQDLE 103

Query: 265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            L ++ N L+  I      M SL  L L  N   
Sbjct: 104 YLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFD 134

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 55/242 (22%), Positives = 92/242 (38%), Gaps = 37/242 (15%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL 145
              L+L+N     S +PE       L  L  SC  SL ++P   Q L  L+        L
Sbjct: 73  AHELELNNLGL--SSLPELPPH---LESLVASC-NSLTELPELPQSLKSLLVDNNNLKAL 126

Query: 146 FSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIW 205
             L           L +L +S   L K  +    +     LK + + + +L  + P    
Sbjct: 127 SDL--------PPLLEYLGVSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKL-PDLP- 172

Query: 206 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS 265
                 S+E +   +N L      P L NL   +  +    NSL+  +P+     +SL+S
Sbjct: 173 -----PSLEFIAAGNNQL---EELPELQNLP-FLTAIYADNNSLK-KLPD---LPLSLES 219

Query: 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLEGVLEII 324
           +   +N LE        N+  L  ++  +N L   L ++  +L       N L  + E+ 
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELP 276

Query: 325 KS 326
           +S
Sbjct: 277 QS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 36/224 (16%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL 145
           L  L  S N    + +PE   SL  L   N +   +L  +P        L YL + N+ L
Sbjct: 93  LESLVASCNSL--TELPELPQSLKSLLVDNNNL-KALSDLP------PLLEYLGVSNNQL 143

Query: 146 FSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIW 205
             L  L    + S L+ +D+   +L K  D         SL+ +   +  L       + 
Sbjct: 144 EKLPEL---QNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQL-----EELP 189

Query: 206 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS 265
                  +  +   +N+L        L +L  ++  +    N L        Q++  L +
Sbjct: 190 ELQNLPFLTAIYADNNSLKK------LPDLPLSLESIVAGNNIL--EELPELQNLPFLTT 241

Query: 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           ++  +N L+  +P    +   L  L +  N L+ +L E+ Q+L+
Sbjct: 242 IYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLT 280

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 53/279 (18%), Positives = 100/279 (35%), Gaps = 58/279 (20%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
           P L     L+ +D+ NN        +       L ++       L ++P   Q L  L  
Sbjct: 147 PELQNSSFLKIIDVDNNSL-----KKLPDLPPSLEFIAAG-NNQLEELP-ELQNLPFLTA 199

Query: 138 LRLENSNL----FSLGSLEWL-------------SHLSSLRHLDLSYINLTKSSDWFQVV 180
           +  +N++L        SLE +              +L  L  +      L    D     
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL---- 255

Query: 181 AKLRSLKTLVLRSCALP--PINPSFIWHFNLS-----------TSIETLDLSDNNLPSSS 227
               SL+ L +R   L   P  P  +   ++S            ++  L+ S N + S  
Sbjct: 256 --PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-- 311

Query: 228 VYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL 287
               L +L  ++  L+++ N L   +P        L+ L  + N L   +P+   N   L
Sbjct: 312 ----LCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---L 359

Query: 288 NRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIKS 326
            +L + +N L  E  ++ +++      + L  V E+ ++
Sbjct: 360 KQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQN 397

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 35/230 (15%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
            +      L  L   + +       P          L YL +S    L K+P   Q  S 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLP--------PLLEYLGVS-NNQLEKLP-ELQNSSF 154

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L  + ++N++L  L  L       SL  +      L +  +       L  L  +   + 
Sbjct: 155 LKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEELPELQN----LPFLTAIYADNN 205

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
           +L  +            S+E++   +N L        L  L+     +    N L+ ++P
Sbjct: 206 SLKKLPDLP-------LSLESIVAGNNILEELPELQNLPFLT----TIYADNNLLK-TLP 253

Query: 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
           +      SL++L++ DN L   +P+   ++  L+      + LS     +
Sbjct: 254 D---LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNL 299

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 44/246 (17%), Positives = 73/246 (29%), Gaps = 48/246 (19%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
           P L  L  L  +   NN      +P+   SL  L   +      L  +P   Q L+ L  
Sbjct: 231 PELQNLPFLTTIYADNNLL--KTLPDLPPSLEALNVRDNY----LTDLPELPQSLTFLDV 284

Query: 138 LRLENSNLFSL-GSLEWL-----------SHLSSLRHLDLSYINLTKSSDWFQVVAKLRS 185
                S L  L  +L +L               SL  L++S   L +             
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL------PPR 338

Query: 186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPS-------------SSVYPWL 232
           L+ L+     L  + P          +++ L +  N L               +S    +
Sbjct: 339 LERLIASFNHLAEV-PELP------QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391

Query: 233 FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292
             L +N+  L +  N LR   P+      S++ L +    +             L     
Sbjct: 392 PELPQNLKQLHVETNPLR-EFPDI---PESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 293 PHNKLS 298
            H+   
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 33/192 (17%), Positives = 61/192 (31%), Gaps = 41/192 (21%)

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
            + L      +SNL  +       ++ S      ++    +++       + R +    L
Sbjct: 10  NTFLQEPLRHSSNLTEMPVE--AENVKSKTEYYNAWSEWERNAP--PGNGEQREMAVSRL 65

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
           R C              L      L+L++  L  SS+     +L      L  + NSL  
Sbjct: 66  RDC--------------LDRQAHELELNNLGL--SSLPELPPHLE----SLVASCNSLT- 104

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPK---------------FFGNMCSLNRLFLPHNK 296
            +PE  Q + SL   +     L    P                   N   L  + + +N 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 297 LSGELSEMIQNL 308
           L  +L ++  +L
Sbjct: 165 LK-KLPDLPPSL 175

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 54/253 (21%), Positives = 88/253 (34%), Gaps = 56/253 (22%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL------------- 132
           LR L++S N    + +P     L  L   +    T L  +P     L             
Sbjct: 83  LRTLEVSGNQL--TSLPVLPPGLLELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLPVL 139

Query: 133 -SGLVYLRLENSNLFSL----GSLEWL-----------SHLSSLRHLDLSYINLTKSSDW 176
             GL  L + ++ L SL      L  L              S L+ L +S   L      
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL 199

Query: 177 FQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 236
               ++L  L     R  +LP           L + ++ L +S N L S      L  L 
Sbjct: 200 P---SELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLTS------LPVLP 240

Query: 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK 296
             +  L ++ N L  S+P        L SL +  N+L   +P+   ++ S   + L  N 
Sbjct: 241 SELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 297 LSGELSEMIQNLS 309
           LS    + ++ ++
Sbjct: 296 LSERTLQALREIT 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 41/223 (18%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL 145
              L++  +    + +P+ +   + +  L +    +L  +P        L  L +  + L
Sbjct: 42  NAVLNVGESGL--TTLPDCLP--AHITTLVIPD-NNLTSLP---ALPPELRTLEVSGNQL 93

Query: 146 FSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIW 205
            SL  L     L  L        +L               L  L +    L  +      
Sbjct: 94  TSLPVL--PPGLLELSIFSNPLTHLPAL---------PSGLCKLWIFGNQLTSLPVLP-- 140

Query: 206 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS 265
                  ++ L +SDN L  +S+      L +    L    N L  S+P        L+ 
Sbjct: 141 -----PGLQELSVSDNQL--ASLPALPSELCK----LWAYNNQLT-SLPMLPS---GLQE 185

Query: 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNL 308
           L ++DN+L   +P        L +L+  +N+L+  L  +   L
Sbjct: 186 LSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGL 223

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 5e-11
 Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 36/201 (17%)

Query: 108 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSY 167
            +    LN+   + L  +P      + +  L + ++NL SL      +    LR L++S 
Sbjct: 39  NNGNAVLNVG-ESGLTTLPDCL--PAHITTLVIPDNNLTSL-----PALPPELRTLEVSG 90

Query: 168 INLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSS 227
             LT           L  L         LP           L + +  L +  N L S  
Sbjct: 91  NQLTSLPVLP---PGLLELSIFSNPLTHLP----------ALPSGLCKLWIFGNQLTS-- 135

Query: 228 VYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL 287
               L  L   +  L ++ N L  S+P        L  L   +N+L   +P        L
Sbjct: 136 ----LPVLPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSG---L 183

Query: 288 NRLFLPHNKLSGELSEMIQNL 308
             L +  N+L+  L  +   L
Sbjct: 184 QELSVSDNQLA-SLPTLPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 43/229 (18%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL 145
           L+ L +S+N    + +P     L +L   N      L  +P      SGL  L + ++ L
Sbjct: 143 LQELSVSDNQL--ASLPALPSELCKLWAYNNQ----LTSLPM---LPSGLQELSVSDNQL 193

Query: 146 FSL----GSLEWL-----------SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
            SL      L  L           +  S L+ L +S   LT       +      LK L+
Sbjct: 194 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT------SLPVLPSELKELM 247

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
           +    L  + P         + + +L +  N L  + +   L +L  +   ++L  N L 
Sbjct: 248 VSGNRLTSL-PMLP------SGLLSLSVYRNQL--TRLPESLIHL-SSETTVNLEGNPLS 297

Query: 251 GSIPEAFQHMVSLKSLH---LTDNELEGGIPKFFGNMCSLNRLFLPHNK 296
               +A + + S        +  +      P+    +      +L   +
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 181 AKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL 240
                   L +    L  +         L   I TL + DNNL  +S+      L     
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDC------LPAHITTLVIPDNNL--TSLPALPPELR---- 84

Query: 241 VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE 300
            L+++ N L  S+P     ++ L         L             L +L++  N+L+  
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-S 135

Query: 301 LSEMIQNL 308
           L  +   L
Sbjct: 136 LPVLPPGL 143

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 15/217 (6%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENS 143
           +   L              F G    L  + +S    L  +    F  L  L  +R+E +
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPI---- 199
           N     + E   +L +L++L +S   +         V K+ SL+ ++L       I    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKH----LPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 200 NPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQH 259
             SF+    LS     L L+ N +    ++   FN ++   +     N+L     + F  
Sbjct: 146 RNSFV---GLSFESVILWLNKNGI--QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 260 MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK 296
                 L ++   +         N+  L      + K
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 38/219 (17%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYL 138
               L  L  + +                 + L Y+N          P  FQ L  L YL
Sbjct: 74  VFSNLPKLHEIRIEKA--------------NNLLYIN----------PEAFQNLPNLQYL 109

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSY-INLTK-SSDWFQVVAKLRSLKTLVLRSCAL 196
            + N+ +  L  +    H      LD+   IN+     + F  ++       L L    +
Sbjct: 110 LISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKNGI 166

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA 256
             I+ S    FN +   E     +NNL    +   +F+ +   ++LD++   +       
Sbjct: 167 QEIHNSA---FNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSYG 221

Query: 257 FQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
            +++  L++    + +    +P     + +L    L + 
Sbjct: 222 LENLKKLRARSTYNLKK---LPTLE-KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 17/189 (8%)

Query: 116 LSC-GTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKS- 173
             C  + + ++P         + LR   + L  +      S    L  +++S  ++ +  
Sbjct: 14  FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVI 70

Query: 174 -SDWFQVVAKLRSLKTL-VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW 231
            +D F     L  L  + + ++  L  INP     F    +++ L +S+  +    +   
Sbjct: 71  EADVFS---NLPKLHEIRIEKANNLLYINPE---AFQNLPNLQYLLISNTGI--KHLPDV 122

Query: 232 LFNLSRNILVLDLAFNSLRGSIPE-AFQHMVS-LKSLHLTDNELEGGIPKFFGNMCSLNR 289
               S   ++LD+  N    +I   +F  +      L L  N ++      F        
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 290 LFLPHNKLS 298
               +N L 
Sbjct: 183 NLSDNNNLE 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 212 SIETLDLSDNNL---PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHL 268
           S       ++ +   PS        +L RN + L      LR     AF     L+ + +
Sbjct: 10  SNRVFLCQESKVTEIPS--------DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 269 TDNELEGGIPKF-FGNMCSLNRLFLPH-NKLS 298
           + N++   I    F N+  L+ + +   N L 
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 38/236 (16%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
                ++    L L+  +   S +P+ +    ++  L ++   +L+ +P   +  + L Y
Sbjct: 53  LKECLINQFSELQLNRLNL--SSLPDNLPP--QITVLEIT-QNALISLP---ELPASLEY 104

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L   ++ L +L  L      +SL+HLD+    LT   +          L+ +   +  L 
Sbjct: 105 LDACDNRLSTLPEL-----PASLKHLDVDNNQLTMLPEL------PALLEYINADNNQLT 153

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            +           TS+E L + +N L        L  L  ++  LD++ N L  S+P   
Sbjct: 154 MLPELP-------TSLEVLSVRNNQLTF------LPELPESLEALDVSTNLLE-SLPAVP 199

Query: 258 QHMVSLKS----LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
                 +         +N +   IP+   ++     + L  N LS  + E +   +
Sbjct: 200 VRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 36/231 (15%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL 145
           +  L+++ N      +PE   SL    YL+      L  +P   +  + L +L ++N+ L
Sbjct: 82  ITVLEITQNAL--ISLPELPASL---EYLDAC-DNRLSTLP---ELPASLKHLDVDNNQL 132

Query: 146 FSL----GSLEWLS-----------HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
             L      LE+++             +SL  L +    LT   +         SL+ L 
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL------PESLEALD 186

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
           + +  L  +    + + +   +       +N +  + +   + +L      + L  N L 
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRI--THIPENILSL-DPTCTIILEDNPLS 243

Query: 251 GSIPEAFQHMVSLKSLHLTDNELE---GGIPKFFGNMCSLNRLFLPHNKLS 298
             I E+     +    H          G        +      + P NK S
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 16/203 (7%)

Query: 75  TISP-ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYL 132
            +   +     +L+ LDLS           +   LS L  L L+ G  +  +    F  L
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILT-GNPIQSLALGAFSGL 99

Query: 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK--SSDWFQVVAKLRSLKTLV 190
           S L  L    +NL SL +   + HL +L+ L++++  +      ++F   + L +L+ L 
Sbjct: 100 SSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYF---SNLTNLEHLD 155

Query: 191 LRSCALPPINPSFIWHF-NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL 249
           L S  +  I  + +     +     +LDLS N +  + + P  F     +  L L  N L
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFK-EIRLKELALDTNQL 212

Query: 250 RGSIPE-AFQHMVSLKSLHLTDN 271
           + S+P+  F  + SL+ + L  N
Sbjct: 213 K-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 19/218 (8%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYLRLENS 143
             ++LDLS N         F  S   L+ L+LS    +  +    +Q LS L  L L  +
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRS---CALPPI 199
            + SL      S LSSL+ L     NL    +        L++LK L +      +    
Sbjct: 87  PIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIG---HLKTLKELNVAHNLIQSFKLP 142

Query: 200 NPSFIWHFNLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
                 +F+  T++E LDLS N + S   +    L  +    L LDL+ N +   I    
Sbjct: 143 E-----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA 196

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
              + LK L L  N+L+      F  + SL +++L  N
Sbjct: 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 12/144 (8%)

Query: 158 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETL 216
            S ++LDLS+  L    S  F        L+ L L  C +  I       +   + + TL
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQTIEDGA---YQSLSHLSTL 81

Query: 217 DLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNEL-E 274
            L+ N +   S+    F+   ++  L     +L  S+      H+ +LK L++  N +  
Sbjct: 82  ILTGNPI--QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 275 GGIPKFFGNMCSLNRLFLPHNKLS 298
             +P++F N+ +L  L L  NK+ 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSL 266
           NL  S + LDLS N L    +  + F     + VLDL+   ++ +I + A+Q +  L +L
Sbjct: 25  NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTL 81

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            LT N ++      F  + SL +L      L+
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 5e-14
 Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 23/219 (10%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLR 139
           +  L ++  L L+ N        + + +L  L +L L     +  +    + L  L  L 
Sbjct: 61  IQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLD-ENKIKDLS-SLKDLKKLKSLS 115

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPI 199
           LE++    +  +  L HL  L  L L    +T       V+++L  L TL L    +   
Sbjct: 116 LEHNG---ISDINGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQI--- 165

Query: 200 NPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQH 259
             S I      T ++ L LS N++        L NL     VL+L              +
Sbjct: 166 --SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLD----VLELFSQECLNKPINHQSN 219

Query: 260 MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           +V   ++  TD  L    P+   +     +  +  +   
Sbjct: 220 LVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 2e-13
 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 22/192 (11%)

Query: 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS 166
           + +     NL    S+         L+ +  +   NS++    S++ + +L ++  L L+
Sbjct: 19  AFAETIKDNLK-KKSVTDAV-TQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 73

Query: 167 YINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSS 226
              LT      + +  L++L  L L    +  ++            +++L L  N +   
Sbjct: 74  GNKLTD----IKPLTNLKNLGWLFLDENKIKDLSS-----LKDLKKLKSLSLEHNGI--- 121

Query: 227 SVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCS 286
           S    L +L   +  L L  N +  +       +  L +L L DN++   I      +  
Sbjct: 122 SDINGLVHLP-QLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTK 176

Query: 287 LNRLFLPHNKLS 298
           L  L+L  N +S
Sbjct: 177 LQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 3e-13
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 23/220 (10%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
               +L+ +  +  +N+        + I  L  +  L L+ G  L  +  P   L  L +
Sbjct: 37  VTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLN-GNKLTDIK-PLTNLKNLGW 91

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L L+ + +  L SL+    L  L+ L L +  ++        +  L  L++L L +  + 
Sbjct: 92  LFLDENKIKDLSSLK---DLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKIT 144

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            I        +  T ++TL L DN +        L  L      L L+ N +  S   A 
Sbjct: 145 DITV-----LSRLTKLDTLSLEDNQISDIVPLAGLTKLQ----NLYLSKNHI--SDLRAL 193

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
             + +L  L L   E          N+   N +      L
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 31/219 (14%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLR 139
           +     L  LD   N          +   ++L  L+ S    + ++         L  L 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCS-FNKITELD--VSQNKLLNRLN 197

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPI 199
            + +N+  L     L+    L  LD S   LT+       V  L  L         L  +
Sbjct: 198 CDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTEL 248

Query: 200 NPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQH 259
           + S +      + + TL     +L          +L+ N  ++       R        H
Sbjct: 249 DVSTL------SKLTTLHCIQTDLLE-------IDLTHNTQLIYFQAEGCRKIKELDVTH 295

Query: 260 MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
              L  L      +   +         L  L+L + +L+
Sbjct: 296 NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 35/219 (15%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLR 139
           +L  L  LD  N+          I  L+ L  L  +    T+L          + L YL 
Sbjct: 40  QLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTL-----DLSQNTNLTYLA 91

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPI 199
            +++ L +L     ++ L+ L +L+     LTK       V++   L  L      L  I
Sbjct: 92  CDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI 142

Query: 200 NPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQH 259
           +       + +T +  LD   N   +         L+     LD +FN +   +      
Sbjct: 143 D------VSHNTQLTELDCHLNKKITKLDVTPQTQLT----TLDCSFNKIT-ELD--VSQ 189

Query: 260 MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
              L  L+   N +   +         L  L    NKL+
Sbjct: 190 NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 42/251 (16%), Positives = 73/251 (29%), Gaps = 42/251 (16%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
                +     L  LD S N          +     L  LN     ++ K+         
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCD-TNNITKL--DLNQNIQ 213

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           L +L   ++ L  +     ++ L+ L + D S   LT+          L  L TL     
Sbjct: 214 LTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQT 264

Query: 195 ALPPINPSF----------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 238
            L  I+ +                       +T +  LD     +          + +  
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD-----LSQNPK 319

Query: 239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           ++ L L    L   +     H   LKSL   +  ++       G + +LN  F    +  
Sbjct: 320 LVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

Query: 299 GELSEMIQNLS 309
               E + N S
Sbjct: 375 TMPKETLTNNS 385

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 32/221 (14%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             + KL  L  L  ++N+         +   + L YL       L  +      L+ L Y
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACD-SNKLTNL--DVTPLTKLTY 110

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L  + + L  L     +S    L +L+ +   LT+       V+    L  L        
Sbjct: 111 LNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKKI 161

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
                        T + TLD S N +          + ++ +  L+   N++   +    
Sbjct: 162 TKLD-----VTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNIT-KLD--L 208

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
              + L  L  + N+L   I      +  L       N L+
Sbjct: 209 NQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 25/186 (13%)

Query: 113 YLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK 172
            +  +            + L+ L  L   NS++     +  +  L+ L  L  +  N+T 
Sbjct: 23  EVAAAFEMQATD-TISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNITT 78

Query: 173 SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL 232
                  +++  +L  L   S  L  ++          T +  L+   N L         
Sbjct: 79  LD-----LSQNTNLTYLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKLD----- 122

Query: 233 FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292
            + +  +  L+ A N+L   I     H   L  L    N+    +         L  L  
Sbjct: 123 VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177

Query: 293 PHNKLS 298
             NK++
Sbjct: 178 SFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 16/163 (9%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLR 139
           L     L +                +   ++L  L+      + ++         LVYL 
Sbjct: 271 LTHNTQLIYFQAEGCRKIKEL---DVTHNTQLYLLDCQ-AAGITELD--LSQNPKLVYLY 324

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPI 199
           L N+ L  L     +SH + L+ L     ++      F  V K+ +L            +
Sbjct: 325 LNNTELTELD----VSHNTKLKSLSCVNAHIQD----FSSVGKIPALNNNFEAEGQTITM 376

Query: 200 NPSFI--WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL 240
               +      ++ S + LD   N +        +++ + N +
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTI 419

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 25/231 (10%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
                L  +  L             E +  L+ L  L L     +  +  P + L+ +  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELK-DNQITDLA-PLKNLTKITE 89

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L L  + L    ++  ++ L S++ LDL+   +T        +A L +L+ L L    + 
Sbjct: 90  LELSGNPL---KNVSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQIT 142

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            I+P         T+++ L + +  +   +    L  L+     L    N +   I    
Sbjct: 143 NISP-----LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT----LKADDNKIS-DIS-PL 191

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNL 308
             + +L  +HL +N++    P    N  +L  + L +  ++ +      NL
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 23/220 (10%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             +  L++L  L+L +N          + +L+++  L LS   + LK       L  +  
Sbjct: 57  EGVQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSG--NPLKNVSAIAGLQSIKT 111

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L L ++    +  +  L+ LS+L+ L L    +T  S     +A L +L+ L + +  + 
Sbjct: 112 LDLTSTQ---ITDVTPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVS 164

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            + P         + + TL   DN +   S    L NL      + L  N +  S     
Sbjct: 165 DLTP-----LANLSKLTTLKADDNKISDISPLASLPNLIE----VHLKNNQI--SDVSPL 213

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
            +  +L  + LT+  +      +  N+   N +  P    
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 22/192 (11%)

Query: 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS 166
           +L+    +     +++         L G+  L    + +    ++E + +L++L  L+L 
Sbjct: 17  ALANAIKIAAG-KSNVTDTV-TQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 167 YINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSS 226
              +T        +  L  +  L L    L  ++           SI+TLDL+   +   
Sbjct: 72  DNQITD----LAPLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDLTSTQITDV 122

Query: 227 SVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCS 286
           +    L NL     VL L  N +  +I      + +L+ L + + ++    P    N+  
Sbjct: 123 TPLAGLSNLQ----VLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 287 LNRLFLPHNKLS 298
           L  L    NK+S
Sbjct: 175 LTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 21/194 (10%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
            A+  L  ++ LDL++           +  LS L+ L L     +  +  P   L+ L Y
Sbjct: 101 SAIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLD-LNQITNIS-PLAGLTNLQY 155

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L + N+    +  L  L++LS L  L      ++  S     +A L +L  + L++  + 
Sbjct: 156 LSIGNAQ---VSDLTPLANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQIS 208

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
            ++P        ++++  + L++  + +  V+ +  NL    +V   +   +    P   
Sbjct: 209 DVSP-----LANTSNLFIVTLTNQTITNQPVF-YNNNLVVPNVVKGPSGAPI---APATI 259

Query: 258 QHMVSLKSLHLTDN 271
               +  S +LT N
Sbjct: 260 SDNGTYASPNLTWN 273

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 32/196 (16%), Positives = 74/196 (37%), Gaps = 15/196 (7%)

Query: 79  ALLKLHDLRHLDLS-NNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLV 136
           A   L ++  + +S +          F   LS++ ++ +    +L  +     + L  L 
Sbjct: 50  AFSNLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLK 108

Query: 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLRSC 194
           +L + N+ L     L  +        L+++      S   + FQ +       TL L + 
Sbjct: 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNN 166

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLF-NLSRNILVLDLAFNSLRGSI 253
               +       FN  T ++ + L+ N    + +    F  +     +LD++  S+  ++
Sbjct: 167 GFTSVQGYA---FNG-TKLDAVYLNKNKY-LTVIDKDAFGGVYSGPSLLDVSQTSVT-AL 220

Query: 254 P-EAFQHMVSLKSLHL 268
           P +  +H+  L + + 
Sbjct: 221 PSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 14/149 (9%)

Query: 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLD 217
                  ++  ++       ++ +   S +TL L    L  I       F+   +I  + 
Sbjct: 11  HQEEDFRVTCKDIQ------RIPSLPPSTQTLKLIETHLRTIPSH---AFSNLPNISRIY 61

Query: 218 LSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP-EAFQHMVSLKSLHLTDNELEGG 276
           +S +      +    F     +  +++        I  +A + +  LK L + +  L+  
Sbjct: 62  VSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-M 119

Query: 277 IP--KFFGNMCSLNRLFLPHNKLSGELSE 303
            P      +      L +  N     +  
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 9e-13
 Identities = 31/169 (18%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
           ++ L Y+ L N N+     L  + +  +++ L ++ I+ T  +     ++ L +L+ L +
Sbjct: 43  MNSLTYITLANINV---TDLTGIEYAHNIKDLTINNIHATNYN----PISGLSNLERLRI 95

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG 251
               +       +      TS+  LD+S +    S +   +  L   +  +DL++N    
Sbjct: 96  MGKDVTSDKIPNLSGL---TSLTLLDISHSAHDDSILTK-INTLP-KVNSIDLSYNGAIT 150

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE 300
            I    + +  LKSL++  + +         +   LN+L+     + G+
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 15/169 (8%)

Query: 105 IGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD 164
              ++ L Y+ L+     +      +Y   +  L + N +     +   +S LS+L  L 
Sbjct: 40  EAQMNSLTYITLAN--INVTDLTGIEYAHNIKDLTINNIH---ATNYNPISGLSNLERLR 94

Query: 165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLP 224
           +   ++T  SD    ++ L SL  L +   A      + I        + ++DLS N   
Sbjct: 95  IMGKDVT--SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL---PKVNSIDLSYNGA- 148

Query: 225 SSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNEL 273
            + + P L  L   +  L++ F+ +        +    L  L+     +
Sbjct: 149 ITDIMP-LKTLP-ELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 12/144 (8%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLE 141
             H+++ L ++N H         I  LS L  L +               L+ L  L + 
Sbjct: 64  YAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           +S       L  ++ L  +  +DLSY            +  L  LK+L ++   +     
Sbjct: 121 HSAH-DDSILTKINTLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGVHDYRG 176

Query: 202 SFIWHFNLSTSIETLDLSDNNLPS 225
             I  F     +  L      +  
Sbjct: 177 --IEDF---PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 19/129 (14%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 181 AKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL 240
           A++ SL  + L +  +  +  + I +     +I+ L +++ +  + +    +  LS N+ 
Sbjct: 41  AQMNSLTYITLANINVTDL--TGIEYA---HNIKDLTINNIHATNYNP---ISGLS-NLE 91

Query: 241 VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE 300
            L +    +          + SL  L ++ +  +  I      +  +N + L +N    +
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 301 LSEMIQNLS 309
           +   ++ L 
Sbjct: 152 IMP-LKTLP 159

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
            +P +  L +L  L +       S     +  L+ L  L++S       +      L  +
Sbjct: 81  YNP-ISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
             + L  +    +  +  L  L  L+ L++ +  +         +     L  L   S
Sbjct: 139 NSIDLSYNGA--ITDIMPLKTLPELKSLNIQFDGVHDYRG----IEDFPKLNQLYAFS 190

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 46/212 (21%), Positives = 74/212 (34%), Gaps = 20/212 (9%)

Query: 86  LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENSN 144
              ++    +   + +P  +        L+LS    L           + L  L L+ + 
Sbjct: 12  HLEVNCDKRNL--TALPPDL--PKDTTILHLS-ENLLYTFSLATLMPYTRLTQLNLDRA- 65

Query: 145 LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFI 204
              L  L+    L  L  LDLS+  L       Q    L +L  L +    L  +     
Sbjct: 66  --ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGA- 119

Query: 205 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSL 263
                   ++ L L  N L   ++ P L   +  +  L LA N+L   +P      + +L
Sbjct: 120 --LRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
            +L L +N L      FFG+   L   FL  N
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 15/164 (9%)

Query: 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL 196
            L L  + L++  SL  L   + L  L+L    LTK     QV   L  L TL L    L
Sbjct: 35  ILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQL 89

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE- 255
             +         L  ++  LD+S N L  +S+          +  L L  N L+ ++P  
Sbjct: 90  QSLPLLGQ---TL-PALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPG 142

Query: 256 AFQHMVSLKSLHLTDNELEGGIPK-FFGNMCSLNRLFLPHNKLS 298
                  L+ L L +N L   +P      + +L+ L L  N L 
Sbjct: 143 LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 15/143 (10%)

Query: 157 LSSLRHLDLSYINLTKSSDWFQVVAKL-RSLKTLVLRSCALPPINPSFIWHFNLSTSIET 215
           ++S   ++    NLT       +   L +    L L    L   + +        T +  
Sbjct: 9   VASHLEVNCDKRNLT------ALPPDLPKDTTILHLSENLLYTFSLAT---LMPYTRLTQ 59

Query: 216 LDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG 275
           L+L    L    V   L  L      LDL+ N L+ S+P   Q + +L  L ++ N L  
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGT----LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 276 GIPKFFGNMCSLNRLFLPHNKLS 298
                   +  L  L+L  N+L 
Sbjct: 115 LPLGALRGLGELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 51/198 (25%), Positives = 70/198 (35%), Gaps = 38/198 (19%)

Query: 75  TISP-ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 133
           T S   L+    L  L+L       + +    G+L  L  L+LS    L  +P   Q L 
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLS-HNQLQSLPLLGQTLP 100

Query: 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
            L  L +  + L SL  L  L  L  L+ L L    L                       
Sbjct: 101 ALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELK---------------------- 137

Query: 194 CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI 253
             LPP           +  +E L L++NNL  + +   L N   N+  L L  NSL  +I
Sbjct: 138 -TLPP------GLLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLY-TI 187

Query: 254 PEAFQHMVSLKSLHLTDN 271
           P+ F     L    L  N
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLV 136
                L  L  LDLS+N      +P    +L  L  L++S    L  +P    + L  L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQ 127

Query: 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL 196
            L L+ + L +L     L+    L  L L+  NLT+      ++  L +L TL+L+  +L
Sbjct: 128 ELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQENSL 184

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW 231
             I   F   F     +    L  N        PW
Sbjct: 185 YTIPKGF---FGSH-LLPFAFLHGN--------PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL 266
            +   S   ++    NL  +++ P   +L ++  +L L+ N L             L  L
Sbjct: 6   VSKVASHLEVNCDKRNL--TALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           +L   EL   +    G +  L  L L HN+L   L  + Q L 
Sbjct: 61  NLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP 100

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 39/163 (23%), Positives = 59/163 (36%), Gaps = 9/163 (5%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRLENS 143
               LDLS+N+            L+ L  L LS    L  +    F  +  L YL L ++
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPS 202
           +L +L      S L +L  L L   ++     + F+    +  L+ L L    +      
Sbjct: 99  HLHTLDE-FLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQISRFPVE 154

Query: 203 FIWHFNLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLD 243
            I   N    +  LDLS N L     +    L    +N L L 
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 13/157 (8%)

Query: 158 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETL 216
           S    LDLS+ NL++  ++W     +L +L +L+L    L  I+      F    ++  L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEA---FVPVPNLRYL 93

Query: 217 DLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEG 275
           DLS N+L   ++  +LF+  + + VL L  N +   +   AF+ M  L+ L+L+ N++  
Sbjct: 94  DLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 276 GIPKFFGNMC---SLNRLFLPHNKLSGELSEMIQNLS 309
              +   +      L  L L  NKL       +Q L 
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 6e-10
 Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 8/198 (4%)

Query: 79  ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVY 137
              +L +L  L LS+NH        F+  +  LRYL+LS    L  +    F  L  L  
Sbjct: 59  TPTRLTNLHSLLLSHNHLNFISSEAFVP-VPNLRYLDLS-SNHLHTLDEFLFSDLQALEV 116

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCAL 196
           L L N+++  +        ++ L+ L LS   +++   +  +   KL  L  L L S  L
Sbjct: 117 LLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN--LSRNILVLDLAFNSLRGSIP 254
             +  + +     +     L L +N L        LF+    R +  +      L     
Sbjct: 176 KKLPLTDLQKLP-AWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHS 234

Query: 255 EAFQHMVSLKSLHLTDNE 272
           +   ++ SL   + ++ +
Sbjct: 235 KKLHNIFSLDFFNCSEYK 252

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 9e-10
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYP-WLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKS 265
           +L +    LDLS NNL  S +   W      N+  L L+ N L   I   AF  + +L+ 
Sbjct: 36  SLPSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRY 92

Query: 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           L L+ N L       F ++ +L  L L +N + 
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 49/257 (19%), Positives = 83/257 (32%), Gaps = 47/257 (18%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
           +S  L  L  L+ L LS+N  G + +      L       L     L K           
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL-------LDPQCRLEK----------- 146

Query: 136 VYLRLENSNLFSLGSL---EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL-----RSLK 187
             L+LE  +L +         L      + L +S  ++ ++    +V+ +        L+
Sbjct: 147 --LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG--VRVLCQGLKDSPCQLE 202

Query: 188 TLVLRSCALPPINPSFI-WHFNLSTSIETLDLSDNNLPSSSV---YPWLFNLSRNILVLD 243
            L L SC +   N   +        S+  L L  N L    +    P L + S  +  L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 244 LAFNSLR----GSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNM-----CSLNRLFLPH 294
           +    +     G +    +   SLK L L  NEL     +          C L  L++  
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 295 NKLSGE----LSEMIQN 307
              +       S ++  
Sbjct: 323 CSFTAACCSHFSSVLAQ 339

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 51/282 (18%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN 144
           D++ LD+       +   E +  L + + + L                       L  + 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-------------------DCGLTEAR 44

Query: 145 LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL-----RSLKTLVLRSCALPPI 199
              + S   L    +L  L+L    L         V +        ++ L L++C L   
Sbjct: 45  CKDISSA--LRVNPALAELNLRSNELGDVG--VHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 200 NPSFIWH-FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN---ILVLDLAFNSLR----G 251
               +        +++ L LSDN L  + +      L      +  L L + SL      
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFG-----NMCSLNRLFLPHNKLSGE----LS 302
            +    +     K L +++N++     +        + C L  L L    ++ +    L 
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 303 EMIQNLSG----GCTMNSL--EGVLEIIKSHRAGRKSMRPLD 338
            ++ + +         N L   G+ E+          +R L 
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 44/257 (17%), Positives = 73/257 (28%), Gaps = 47/257 (18%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLS----RLRYLNLS-CGTSLLKVPRPFQ 130
           ++  L    D + L +SNN    + V      L     +L  L L  CG +        +
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT----SDNCR 217

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR---SLK 187
            L G+                  ++  +SLR L L    L            L     L+
Sbjct: 218 DLCGI------------------VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 188 TLVLRSCALPPINPSFIWH-FNLSTSIETLDLSDNNLPSSSVY---PWLFNLSRNILVLD 243
           TL +  C +       +        S++ L L+ N L           L      +  L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 244 LAFNSLRG----SIPEAFQHMVSLKSLHLTDNELEGGIPKFFG-----NMCSLNRLFLPH 294
           +   S                  L  L +++N LE    +            L  L+L  
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 295 NKLSGE----LSEMIQN 307
             +S      L+  +  
Sbjct: 380 CDVSDSSCSSLAATLLA 396

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 46/258 (17%), Positives = 80/258 (31%), Gaps = 45/258 (17%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
           IS AL     L  L+L +N  G   V   +  L        +    + K           
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ-------TPSCKIQK----------- 89

Query: 136 VYLRLENSNLFSLGSL---EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS----LKT 188
             L L+N  L   G       L  L +L+ L LS   L   +    +   L      L+ 
Sbjct: 90  --LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG-DAGLQLLCEGLLDPQCRLEK 146

Query: 189 LVLRSCALPPINPSFIWH-FNLSTSIETLDLSDNNLPSSSVY---PWLFNLSRNILVLDL 244
           L L  C+L   +   +          + L +S+N++  + V      L +    +  L L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 245 AFNSLR----GSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNM-----CSLNRLFLPHN 295
               +       +        SL+ L L  N+L                  L  L++   
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 296 KLSGE----LSEMIQNLS 309
            ++ +    L  +++   
Sbjct: 267 GITAKGCGDLCRVLRAKE 284

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFI-WHFNLSTSIETL 216
             ++ LD+    L+  + W +++  L+  + + L  C L       I     ++ ++  L
Sbjct: 3   LDIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 217 DLSDNNLPSSSVYPW---LFNLSRNILVLDLAFNSLR----GSIPEAFQHMVSLKSLHLT 269
           +L  N L    V+     L   S  I  L L    L     G +    + + +L+ LHL+
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 270 DNEL-EGGIPKFFG----NMCSLNRLFLPHNKLSGE 300
           DN L + G+           C L +L L +  LS  
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 209 LSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR----GSIPEAFQHMVSLK 264
           +S  I++LD+    L  +     L  L +   V+ L    L       I  A +   +L 
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 265 SLHLTDNELEGGIPKFFGNM-----CSLNRLFLPHNKLSGE----LSEMIQNLS 309
            L+L  NEL                C + +L L +  L+G     LS  ++ L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 56/331 (16%), Positives = 103/331 (31%), Gaps = 63/331 (19%)

Query: 48  SNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFG---GSPVPEF 104
           +  +   K L L     E+ +       +   LL+   ++ + LS N  G      + E 
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKS------VFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN 55

Query: 105 IGSLSRLRYLNLSC---GTSLLKVPRPFQYLSG-------LVYLRLENSNLFSLGSL--- 151
           I S   L     S    G    ++P   + L         L  +RL ++           
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 152 EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST 211
           ++LS  + L HL L    L   +     +A+        L+  A+             + 
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQA--GAKIAR-------ALQELAV-------NKKAKNAP 159

Query: 212 SIETLDLSDNNLPSSSVYPW--LFNLSRNILVLDLAFNSLR-----GSIPEAFQHMVSLK 264
            + ++    N L + S+  W   F   R +  + +  N +R       + E   +   LK
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 265 SLHLTDNEL--EGG--IPKFFGNMCSLNRLFLPHNKLSGE----LSEMIQNLSGGCTMNS 316
            L L DN     G   +     +  +L  L L    LS      + +    L     + +
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE-NIGLQT 278

Query: 317 L---------EGVLEIIKSHRAGRKSMRPLD 338
           L         + V  +          +  L+
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 52/283 (18%), Positives = 93/283 (32%), Gaps = 43/283 (15%)

Query: 53  HVKVLNLRRSDDENARGKVLKG--TISPALLKLHDLRHLDLSNNHF---GGSPVPEFIGS 107
            +++           + ++ +    +  ALLK   L  + LS+N F      P+ +F+  
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 108 LSRLRYLNLS-CGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS 166
            + L +L L   G      P+    ++           L  L   +   +   LR +   
Sbjct: 121 HTPLEHLYLHNNGLG----PQAGAKIA---------RALQELAVNKKAKNAPPLRSIICG 167

Query: 167 YINLTKSS--DWFQVVAKLRSLKTLVLRSCALPPINPSFIWH-----FNLSTSIETLDLS 219
              L   S  +W +     R L T+ +       I P  I H           ++ LDL 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNG---IRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 220 DNNLPSSSVYPWLFNLSRN--ILVLDLAFNSLRG----SIPEAFQHMV--SLKSLHLTDN 271
           DN             L     +  L L    L      ++ +AF  +    L++L L  N
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 272 EL--EGGIP---KFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
           E+  +            M  L  L L  N+   E  +++  + 
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIR 326

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 43/241 (17%), Positives = 74/241 (30%), Gaps = 40/241 (16%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
           I        +    +L                L+ +  +  +   S +K  +  QYL  +
Sbjct: 17  IFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANN--SDIKSVQGIQYLPNV 70

Query: 136 VYLRLEN------SNLFSLGSLEWL-------------SHLSSLRHLDLSYINLTKSSDW 176
             L L          L +L +L WL               L  L+ L L +  ++     
Sbjct: 71  TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD---- 126

Query: 177 FQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 236
              +  L  L++L L +  +  I        +  T ++TL L DN +        L  L 
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181

Query: 237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK 296
                L L+ N +   +  A   + +L  L L   E          N+   N +      
Sbjct: 182 ----NLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 297 L 297
           L
Sbjct: 236 L 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 22/192 (11%)

Query: 107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS 166
           + +     NL      +        L+ +  +   NS++    S++ + +L ++  L L+
Sbjct: 22  AFAETIKDNLKK--KSVTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 167 YINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSS 226
              LT      + +A L++L  L L    +  ++            +++L L  N +   
Sbjct: 77  GNKLTD----IKPLANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLSLEHNGI--- 124

Query: 227 SVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCS 286
           S    L +L   +  L L  N +  +       +  L +L L DN++   I      +  
Sbjct: 125 SDINGLVHLP-QLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTK 179

Query: 287 LNRLFLPHNKLS 298
           L  L+L  N +S
Sbjct: 180 LQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 128 PFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187
                +  +   L+  ++         + L+S+  +  +  ++       Q +  L ++ 
Sbjct: 19  SDDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKS----VQGIQYLPNVT 71

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247
            L L    L  I P          ++  L L +N +   S    L  L      L L  N
Sbjct: 72  KLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLK----SLSLEHN 122

Query: 248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            +   I     H+  L+SL+L +N++          +  L+ L L  N++S
Sbjct: 123 GIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 19/213 (8%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN 144
           +    +L       +         S  +   +    S +K  +  QYL  + YL L  + 
Sbjct: 20  ETIKANLKKKSV--TDAVTQNELNSIDQ---IIANNSDIKSVQGIQYLPNVRYLALGGNK 74

Query: 145 LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFI 204
           L  + +L+    L++L +L L+   L    +   V  KL +LK LVL    L  + P  +
Sbjct: 75  LHDISALK---ELTNLTYLILTGNQLQSLPN--GVFDKLTNLKELVLVENQLQSL-PDGV 128

Query: 205 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSL 263
             F+  T++  L+L+ N L   S+   +F+   N+  LDL++N L+ S+PE  F  +  L
Sbjct: 129 --FDKLTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQL 183

Query: 264 KSLHLTDNELEGGIPK-FFGNMCSLNRLFLPHN 295
           K L L  N+L+  +P   F  + SL  ++L  N
Sbjct: 184 KDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 147 SLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWH 206
           S+      + L+S+  +  +  ++         +  L +++ L L    L  I+      
Sbjct: 30  SVTDAVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGNKLHDISA----- 80

Query: 207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKS 265
               T++  L L+ N L   S+   +F+   N+  L L  N L+ S+P+  F  + +L  
Sbjct: 81  LKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137

Query: 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
           L+L  N+L+      F  + +L  L L +N+L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 25/222 (11%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
           + P    L +    +L                LS ++  N     S ++     Q+ + L
Sbjct: 12  VFP-DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDN--SNIQSLAGMQFFTNL 65

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA 195
             L L ++    +  L  L  L+ L  L ++   L   +           L  L L +  
Sbjct: 66  KELHLSHNQ---ISDLSPLKDLTKLEELSVNRNRLKNLNG-----IPSACLSRLFLDNNE 117

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE 255
           L   +           ++E L + +N L S  +  +L  L     VLDL  N +  +   
Sbjct: 118 LRDTDS-----LIHLKNLEILSIRNNKLKSIVMLGFLSKLE----VLDLHGNEIT-NT-G 166

Query: 256 AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
               +  +  + LT  +      K+   +   N +  P  + 
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 21/171 (12%)

Query: 128 PFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 187
           P   L+  V   L   ++  L S +    LS +++ +    N+         +    +LK
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQS----LAGMQFFTNLK 66

Query: 188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN 247
            L L    +  ++P         T +E L ++ N L + +  P        +  L L  N
Sbjct: 67  ELHLSHNQISDLSP-----LKDLTKLEELSVNRNRLKNLNGIPSA-----CLSRLFLDNN 116

Query: 248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            L     ++  H+ +L+ L + +N+L+       G +  L  L L  N+++
Sbjct: 117 EL--RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT 163

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 7e-10
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLR 139
                 L   +LS      + +   + S   L+ L       LL +    + L  L+Y +
Sbjct: 345 SATDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 402

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPI 199
                  +L +++       +R   L  +      +   +  +   ++ L L    L   
Sbjct: 403 ETLQYFSTLKAVD------PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--- 453

Query: 200 NPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQH 259
             + + H      +  LDLS N L   ++ P L  L R + VL  + N+L  ++     +
Sbjct: 454 --TVLCHLEQLLLVTHLDLSHNRL--RALPPALAAL-RCLEVLQASDNALE-NVDG-VAN 506

Query: 260 MVSLKSLHLTDNELEG-GIPKFFGNMCSLNRLFLPHNKLS 298
           +  L+ L L +N L+     +   +   L  L L  N L 
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             L +L  + HLDLS+N      +P  + +L  L  L  S   + L+       L  L  
Sbjct: 457 CHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASD--NALENVDGVANLPRLQE 512

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTLV 190
           L L N+ L    +++ L     L  L+L   +L +      ++   L S+ +++
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 35/146 (23%)

Query: 84  HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS 143
            D+R L L++       V   +  L  + +L+LS    L  +P     L  L  L+  ++
Sbjct: 441 ADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLS-HNRLRALPPALAALRCLEVLQASDN 496

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF 203
            L ++  +    +L  L+ L L    L +S+     +  L S   L              
Sbjct: 497 ALENVDGVA---NLPRLQELLLCNNRLQQSAA----IQPLVSCPRL-------------- 535

Query: 204 IWHFNLSTSIETLDLSDNNLPSSSVY 229
                       L+L  N+L      
Sbjct: 536 ----------VLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 18/183 (9%)

Query: 129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK- 187
           +          L              +    L   +LS    T      +   +L+ L+ 
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRD--SATDEQLFRCELSVEKSTVLQSELESCKELQELEP 379

Query: 188 ---TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL---- 240
                +L    L       ++         TL   D    +         L  N +    
Sbjct: 380 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439

Query: 241 -----VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
                VL LA   L  ++    + ++ +  L L+ N L   +P     +  L  L    N
Sbjct: 440 YADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496

Query: 296 KLS 298
            L 
Sbjct: 497 ALE 499

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 53/214 (24%), Positives = 79/214 (36%), Gaps = 39/214 (18%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENS 143
           D + LDL +N     P   F   L++LR L L+    L  +P   F+ L  L  L + ++
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPS 202
            L +L  +     L +L  L L    L       F     L  L  L L    L  +   
Sbjct: 96  KLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPRVF---DSLTKLTYLSLGYNELQSLPKG 151

Query: 203 FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMV 261
               F+  TS++ L L +N L                             +PE AF  + 
Sbjct: 152 V---FDKLTSLKELRLYNNQLKR---------------------------VPEGAFDKLT 181

Query: 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
            LK+L L +N+L+      F ++  L  L L  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 47/192 (24%), Positives = 66/192 (34%), Gaps = 37/192 (19%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLE 141
           +L  LR L L++N     P   F   L  L  L ++    L  +P               
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKE-LKNLETLWVT-DNKLQALP--------------- 101

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPIN 200
              +F          L +L  L L    L       F     L  L  L L    L  + 
Sbjct: 102 -IGVF--------DQLVNLAELRLDRNQLKSLPPRVF---DSLTKLTYLSLGYNELQSLP 149

Query: 201 PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQH 259
                 F+  TS++ L L +N L    V    F+    +  L L  N L+  +PE AF  
Sbjct: 150 KGV---FDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDS 203

Query: 260 MVSLKSLHLTDN 271
           +  LK L L +N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)

Query: 158 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETL 216
           +  + LDL    L+   S  F    +L  L+ L L    L  +       F    ++ETL
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFH---RLTKLRLLYLNDNKLQTLPAGI---FKELKNLETL 90

Query: 217 DLSDNNLPS--SSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNEL 273
            ++DN L +    V+  L NL+     L L  N L+ S+P   F  +  L  L L  NEL
Sbjct: 91  WVTDNKLQALPIGVFDQLVNLAE----LRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 274 EGGIPK-FFGNMCSLNRLFLPHNKLS 298
           +  +PK  F  + SL  L L +N+L 
Sbjct: 146 QS-LPKGVFDKLTSLKELRLYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSL 266
           N+    + LDL  N L  SS+    F+    + +L L  N L+ ++P   F+ + +L++L
Sbjct: 34  NIPADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            +TDN+L+      F  + +L  L L  N+L 
Sbjct: 91  WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 21/153 (13%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYLRL 140
           +L +L  L +++N     P+  F   L  L  L L     L  +P R F  L+ L YL L
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQ-LVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSL 140

Query: 141 ENSNLFSL--GSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198
             + L SL  G  +    L+SL+ L L    L +  +      KL  LKTL L +  L  
Sbjct: 141 GYNELQSLPKGVFD---KLTSLKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLKR 195

Query: 199 INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW 231
           +       F+    ++ L L +N        PW
Sbjct: 196 VPEGA---FDSLEKLKMLQLQEN--------PW 217

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSL 266
           NL  +I  + L  N +    + P  F+  + +  +DL+ N +   +   AFQ + SL SL
Sbjct: 29  NLPETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL 85

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            L  N++       F  + SL  L L  NK++
Sbjct: 86  VLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 11/140 (7%)

Query: 158 SSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETL 216
            ++  + L    +       F      + L+ + L +  +  + P     F    S+ +L
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFS---PYKKLRRIDLSNNQISELAPDA---FQGLRSLNSL 85

Query: 217 DLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEG 275
            L  N +  + +   LF    ++ +L L  N +   +   AFQ + +L  L L DN+L+ 
Sbjct: 86  VLYGNKI--TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 276 GIPKFFGNMCSLNRLFLPHN 295
                F  + ++  + L  N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP-EAFQHMVSLKSLHLT 269
             +  +DLS+N +  S + P  F   R++  L L  N +   +P   F+ + SL+ L L 
Sbjct: 56  KKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112

Query: 270 DNELEGGIPKF-FGNMCSLNRLFLPHNKLS 298
            N++   +    F ++ +LN L L  NKL 
Sbjct: 113 ANKINC-LRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 11/123 (8%)

Query: 75  TISP-ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYL 132
            I P A      LR +DLSNN         F G L  L  L L  G  + ++P   F+ L
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLY-GNKITELPKSLFEGL 103

Query: 133 SGLVYLRLENSNLFSL--GSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
             L  L L  + +  L   + +    L +L  L L    L   +      + LR+++T+ 
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMH 158

Query: 191 LRS 193
           L  
Sbjct: 159 LAQ 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 208 NLSTSIETLDLSDNN---LPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSL 263
           ++      L L++N    L ++ ++  L  L +    ++ + N +   I E AF+    +
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRK----INFSNNKIT-DIEEGAFEGASGV 83

Query: 264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
             + LT N LE    K F  + SL  L L  N+++
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           LRL N+    L +      L  LR ++ S   +T   +          +  ++L S  L 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--AFEGASGVNEILLTSNRLE 94

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-A 256
            +       F    S++TL L  N +  + V    F    ++ +L L  N +  ++   A
Sbjct: 95  NVQHKM---FKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

Query: 257 FQHMVSLKSLHLTDN 271
           F  + SL +L+L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
               L L +     +  + I  F     +  ++ S+N +  + +    F  +  +  + L
Sbjct: 33  YTAELRLNNNEFTVLEATGI--FKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILL 88

Query: 245 AFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGGIPKF-FGNMCSLNRLFLPHNKLS 298
             N L  ++    F+ + SLK+L L  N +   +    F  + S+  L L  N+++
Sbjct: 89  TSNRLE-NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 12/136 (8%)

Query: 163 LDLSYINLTK--SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSD 220
           L L+    T   ++  F+   KL  L+ +   +  +  I       F  ++ +  + L+ 
Sbjct: 37  LRLNNNEFTVLEATGIFK---KLPQLRKINFSNNKITDIEEGA---FEGASGVNEILLTS 90

Query: 221 NNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGGIPK 279
           N L   +V   +F    ++  L L  N +   +   +F  + S++ L L DN++    P 
Sbjct: 91  NRL--ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 280 FFGNMCSLNRLFLPHN 295
            F  + SL+ L L  N
Sbjct: 148 AFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 14/141 (9%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENS 143
               L L+NN F           L +LR +N S    +  +    F+  SG+  + L  S
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILL-TS 90

Query: 144 NLFSLGSLEW--LSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRSCALPPIN 200
           N   L +++      L SL+ L L    +T   +D F     L S++ L L    +  + 
Sbjct: 91  N--RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVA 145

Query: 201 PSFIWHFNLSTSIETLDLSDN 221
           P     F+   S+ TL+L  N
Sbjct: 146 PGA---FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 40  CKWRGVRCSNK------TG---HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLD 90
           C+   V CSN+           +   L L  +       +      +    KL  LR ++
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNN-------EFTVLEATGIFKKLPQLRKIN 63

Query: 91  LSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYLRLENSNLFSLG 149
            SNN         F G  S +  + L+    L  V  + F+ L  L  L L ++ +  + 
Sbjct: 64  FSNNKITDIEEGAFEG-ASGVNEILLT-SNRLENVQHKMFKGLESLKTLMLRSNRITCV- 120

Query: 150 SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
             +    LSS+R L L    +T  +        L SL TL L +
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAP--GAFDTLHSLSTLNLLA 162

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 52/270 (19%), Positives = 101/270 (37%), Gaps = 42/270 (15%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSL----SRLRYLNLS-------CGTSLLK 124
           +       H +  LDLS N+       E I +     + +  LNLS           L++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 125 VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHL-----SSLRHLDLSYINLTKS--SDWF 177
           +       + +  L L + N  S  S + L         ++  LDL + + +    S++ 
Sbjct: 74  ILAAIP--ANVTSLNL-SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130

Query: 178 QVVAKL-RSLKTLVLRSCALPPINPSFIWHF-----NLSTSIETLDLSDNNLPSSSVY-- 229
           Q  + L  S+ +L LR      +              +  ++ +L+L  NNL S +    
Sbjct: 131 QAFSNLPASITSLNLRGND---LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187

Query: 230 -PWLFNLSRNILVLDLAFNSLRGS----IPEAFQHM-VSLKSLHLTDNELEG----GIPK 279
             +L ++  ++  LDL+ N L       +   F  +   + SL+L  N L G     +  
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247

Query: 280 FFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
              ++  L  ++L ++ +     E  + L 
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.7 bits (120), Expect = 3e-07
 Identities = 34/264 (12%), Positives = 78/264 (29%), Gaps = 27/264 (10%)

Query: 32  RDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDL 91
            D  +        +    K   +K + +     E      +   I     K      L  
Sbjct: 87  YDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFW 146

Query: 92  SNNHFG--------GSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS 143
            +  F            +   + ++  L  L +    +L    +P      L  L +  S
Sbjct: 147 GDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEII-S 202

Query: 144 NLFSLGSLEWL--SHLSSLRHLDLSYINLTKSSD-------WFQVVAKLRSLKTLVLRSC 194
                  +E +  S L +L  L L         D             +  +LK L +   
Sbjct: 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262

Query: 195 ALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR--NILVLDLAFNSL--- 249
               +        ++   +ET+D+S   L        L ++ +  ++  +++ +N L   
Sbjct: 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

Query: 250 -RGSIPEAFQHMVSLKSLHLTDNE 272
            +  + ++    + +      D++
Sbjct: 323 MKKELQKSLPMKIDVSDSQEYDDD 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 25/105 (23%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 121 SLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEW--LSHLSSLRHLDLSYINLTKSSDWFQ 178
             L           L  L +EN     L  LE   L  L  LR+L +    L   +    
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAP--D 74

Query: 179 VVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL 223
                  L  L L   AL  ++   +   +L      L LS N L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ----ELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 9e-07
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 206 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS 265
           H   + ++  L + +       +          +  L +  + LR   P+AF     L  
Sbjct: 26  HLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
           L+L+ N LE    K    + SL  L L  N L
Sbjct: 85  LNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 7e-06
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLR 192
            G   LR          SL  L    +L  L +      +  +  + +  L  L+ L + 
Sbjct: 8   HGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIV 64

Query: 193 SCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLF-NLSRNILVLD 243
              L  + P     F+ +  +  L+LS N L   S+       LS   LVL 
Sbjct: 65  KSGLRFVAPD---AFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP-EAFQHMVSLKSLHL 268
           S+ +        +             + N+  L +        +     + +  L++L +
Sbjct: 10  SSGLRCTRDGALDSLHH------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 269 TDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS 309
             + L    P  F     L+RL L  N L     + +Q LS
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 30/130 (23%), Positives = 43/130 (33%), Gaps = 26/130 (20%)

Query: 39  CCKW-RGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFG 97
           C     G+RC+   G +  L                      L    +L  L + N    
Sbjct: 6   CPHGSSGLRCTRD-GALDSL--------------------HHLPGAENLTELYIENQQHL 44

Query: 98  GSPVPEFIGSLSRLRYLNLSCGTSLLKVPR-PFQYLSGLVYLRLENSNLFSLGSLEWLSH 156
                  +  L  LR L +   + L  V    F +   L  L L  + L SL S + +  
Sbjct: 45  QHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQG 102

Query: 157 LSSLRHLDLS 166
           L SL+ L LS
Sbjct: 103 L-SLQELVLS 111

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 6/257 (2%)

Query: 37  RDCCKWRGVRCSNKTGHVKVLN--LRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNN 94
            D   W+ +  + K  H  V    L +        +               ++H+DLSN+
Sbjct: 44  SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 103

Query: 95  HFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWL 154
               S +   +   S+L+ L+L        +       S LV L L   + FS  +L+ L
Sbjct: 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163

Query: 155 -SHLSSLRHLDLSYINLTKSSDWFQVVAKL-RSLKTLVLRSCALPPINPSFIWHFNLSTS 212
            S  S L  L+LS+            VA +  ++  L L                    +
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223

Query: 213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAF-NSLRGSIPEAFQHMVSLKSLHLTDN 271
           +  LDLSD+ +  +  +   F L   +  L L+    +          + +LK+L +   
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

Query: 272 ELEGGIPKFFGNMCSLN 288
             +G +      +  L 
Sbjct: 283 VPDGTLQLLKEALPHLQ 299

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 83  LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLRLE 141
           L     +D S+N        +    L RL+ L ++    + ++     Q L  L  L L 
Sbjct: 41  LDQFDAIDFSDN---EIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELILT 96

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTL 189
           N++L  LG L+ L+ L SL +L +    +T        V+ K+  ++ L
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 77  SPALLKLHDLRHLDLSNNHFGGSPVPEFIGS-LSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
           +         R LDL        PV E +G+ L +   ++ S    + K+   F  L  L
Sbjct: 12  AAQYTNAVRDRELDLRGY---KIPVIENLGATLDQFDAIDFS-DNEIRKL-DGFPLLRRL 66

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
             L + N+ +  +G       L  L  L L+  N          +A L+SL  L +
Sbjct: 67  KTLLVNNNRICRIGEGL-DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCI 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 154 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI 213
            ++    R LDL    +    +   + A L     +      +  ++      F L   +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIRKLD-----GFPLLRRL 66

Query: 214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG-SIPEAFQHMVSLKSLHLTDNE 272
           +TL +++N +    +   L     ++  L L  NSL      +    + SL  L +  N 
Sbjct: 67  KTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124

Query: 273 L 273
           +
Sbjct: 125 V 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSL 263
              +  +     LDL    +P       L         +D + N +R  + + F  +  L
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIE---NLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRL 66

Query: 264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           K+L + +N +          +  L  L L +N L 
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 11/199 (5%)

Query: 82  KLHDLRHLDLSNNHF---GGSPVPEFIGSLSRLRYLNLSCGTSLLK---VPRPFQYLSGL 135
              +L+ LDL  +      G  +  F  + + L  LN+SC  S +    + R       L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213

Query: 136 VYLRLENS-NLFSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKLRSLKTLVLRS 193
             L+L  +  L  L +L  L     L  L         +   +  +   L   K L   S
Sbjct: 214 KSLKLNRAVPLEKLATL--LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271

Query: 194 CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI 253
                +       +++ + + TL+LS   + S  +   L      +  L +        +
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK-LLCQCPKLQRLWVLDYIEDAGL 330

Query: 254 PEAFQHMVSLKSLHLTDNE 272
                    L+ L +  +E
Sbjct: 331 EVLASTCKDLRELRVFPSE 349

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 3/150 (2%)

Query: 53  HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLR 112
             ++  +     +    + L       +    DLR L LS                 ++ 
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKME 459

Query: 113 YLNLS-CGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLT 171
            L+++  G S L +         L  L + +        L   S L ++R L +S  +++
Sbjct: 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

Query: 172 KSSDWFQVVAKLRSLKTLVLRSCALPPINP 201
             +    +  K+  L   V+     P   P
Sbjct: 520 FGA-CKLLGQKMPKLNVEVIDERGAPDSRP 548

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 40/278 (14%), Positives = 89/278 (32%), Gaps = 35/278 (12%)

Query: 81  LKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC---------------GTSLLKV 125
            ++       +   +         I    ++R + L                 G     +
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 126 PRPFQYLSGLVYLRLENSNLFSLGSLEWLS-HLSSLRHLDLSYINLTKSSDWFQVVAKLR 184
                  + L  +RL+   + +   LE ++    + + L LS      +     + A  R
Sbjct: 98  EAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156

Query: 185 SLKTLVLRSCALPPINPSFIWHF-NLSTSIETLDLSD--NNLPSSSVYPWLFNLSRNILV 241
           +LK L LR   +  ++  ++ HF +  TS+ +L++S   + +  S++   L     N+  
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL-ERLVTRCPNLKS 215

Query: 242 LDLAFNSLRGSIPEAFQHMVSLKSLHL------TDNELEGGIPKFFGNMCSLNRLFLPHN 295
           L L        +    Q    L+ L           ++  G+         L  L    +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 296 KLSGELSEMIQNLSG-------GCTMNSLEGVLEIIKS 326
            +   L  +    S          T+ S   +++++  
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQS-YDLVKLLCQ 312

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
           +   L  L   +HL LS N+         +  +  LR L+L     + K+         L
Sbjct: 40  MDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSLGR-NLIKKIENLDAVADTL 95

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL 191
             L +  +    + SL  +  L +LR L +S  N   +      +A L  L+ L+L
Sbjct: 96  EELWISYNQ---IASLSGIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 27/170 (15%)

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198
             E          E +        L      + K       ++ L++ K L L +  +  
Sbjct: 13  IFEERKSVVATEAEKVE-------LHGMIPPIEKMD---ATLSTLKACKHLALSTNNIEK 62

Query: 199 INPSFIWHFNLS--TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA 256
           I+       +LS   ++  L L  N +        L  ++  +  L +++N +  S+   
Sbjct: 63  IS-------SLSGMENLRILSLGRNLIKKIEN---LDAVADTLEELWISYNQIA-SL-SG 110

Query: 257 FQHMVSLKSLHLTDNELE--GGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
            + +V+L+ L++++N++   G I      +  L  L L  N L  +  E 
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKEN 159

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 18/163 (11%)

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK-SSDWFQVVAKLRSLKTLVLRS--- 193
           L L  S   +  S      L+ L  L+L Y  L   S+  F     L  L TL L +   
Sbjct: 40  LDL-QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD---DLTELGTLGLANNQL 95

Query: 194 CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSI 253
            +LP         F+  T ++ L L  N L   S+   +F+    +  L L  N L+ SI
Sbjct: 96  ASLPL------GVFDHLTQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQ-SI 146

Query: 254 PE-AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
           P  AF  + +L++L L+ N+L+      F  +  L  + L  N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSL 266
            +    E LDL    L  +++    F     +  L+L +N L+ ++    F  +  L +L
Sbjct: 32  GIPADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
            L +N+L       F ++  L++L+L  N+L
Sbjct: 89  GLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLDL 244
           + L L+S  L  ++ +    F   T +  L+L  N L +  + V+  L  L      L L
Sbjct: 38  EKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT----LGL 90

Query: 245 AFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           A N L  S+P   F H+  L  L+L  N+L+      F  +  L  L L  N+L 
Sbjct: 91  ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 73  KGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 132
            G I     +  +L  L L N           +  L +L+ L LS       +    + L
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTL 189
             L +L L  + L  + +LE L  L  L+ LDL    +T  +D    V   L  L  L
Sbjct: 95  PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN 144
            +R L L N       +         L +L+L     L+ V      L  L  L L  + 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISVS-NLPKLPKLKKLELSENR 82

Query: 145 LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           +F    +     L +L HL+LS   L   S   + + KL  LK+L L +C
Sbjct: 83  IFGGLDML-AEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDN 271
           ++  L L +       +         N+  L L    L  S+      +  LK L L++N
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSEN 81

Query: 272 ELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            + GG+      + +L  L L  NKL 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 34/145 (23%)

Query: 130 QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 189
           +  + +  L L+N            +   +L  L L  + L         V+ L  L  L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-------VSNLPKLPKL 73

Query: 190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL 249
                                   + L+LS+N +        L     N+  L+L+ N L
Sbjct: 74  ------------------------KKLELSENRI--FGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 250 RG-SIPEAFQHMVSLKSLHLTDNEL 273
           +  S  E  + +  LKSL L + E+
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEV 132

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLR 139
             +  +L  L   N           +  L++L+ L LS       +    +    L +L 
Sbjct: 38  TDEFEELEFLSTINVGL---TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTL 189
           L  + +  L ++E L  L +L+ LDL    +T  +D    V   L  L  L
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN 144
           D++ L L N+      +         L +L+      L  +      L+ L  L L ++ 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSIA-NLPKLNKLKKLELSDNR 75

Query: 145 LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC 194
           +     +       +L HL+LS   +   S   + + KL +LK+L L +C
Sbjct: 76  VSGGLEVL-AEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 34/145 (23%)

Query: 130 QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 189
           +  S +  L L+NS                L  L    + LT        +A L  L  L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-------IANLPKLNKL 66

Query: 190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL 249
                                   + L+LSDN +  S     L     N+  L+L+ N +
Sbjct: 67  ------------------------KKLELSDNRV--SGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 250 RG-SIPEAFQHMVSLKSLHLTDNEL 273
           +  S  E  + + +LKSL L + E+
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEV 125

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSL 266
            +   +  L L  N        P   +  +++ ++DL+ N +  ++   +F +M  L +L
Sbjct: 28  GIPRDVTELYLDGNQFTLV---PKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTL 83

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
            L+ N L    P+ F  + SL  L L  N +S
Sbjct: 84  ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 208 NLSTSIETLDLSDN---NLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSL 263
           ++      L L+DN    + S  ++  L +L +    L+L  N L   I   AF+    +
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFGRLPHLVK----LELKRNQLT-GIEPNAFEGASHI 80

Query: 264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS 298
           + L L +N+++    K F  +  L  L L  N++S
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 12/137 (8%)

Query: 161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSD 220
           + L L    +TK      V   L +LK L L S  L  + P  +  F+  T +  LDL  
Sbjct: 43  QILYLHDNQITKLEP--GVFDSLINLKELYLGSNQLGAL-PVGV--FDSLTQLTVLDLGT 97

Query: 221 NNLPS--SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIP 278
           N L    S+V+  L +L      L +  N L   +P   + +  L  L L  N+L+    
Sbjct: 98  NQLTVLPSAVFDRLVHLKE----LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152

Query: 279 KFFGNMCSLNRLFLPHN 295
             F  + SL   +L  N
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA-FQHMVSLKSL 266
            + T+ + L L DN +  + + P +F+   N+  L L  N L  ++P   F  +  L  L
Sbjct: 37  GIPTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVL 93

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
            L  N+L       F  +  L  LF+  NKL
Sbjct: 94  DLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKS 265
           F+   +++ L L  N L   ++   +F+    + VLDL  N L   +P   F  +V LK 
Sbjct: 60  FDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKE 116

Query: 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
           L +  N+L   +P+    +  L  L L  N+L
Sbjct: 117 LFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 65/369 (17%), Positives = 126/369 (34%), Gaps = 110/369 (29%)

Query: 12  ALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSN-----KTGHVKVLNL--RRSDD 64
           A  T   S+      L+    D  K    K+   R  +      T + + L++      D
Sbjct: 283 AATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 65  ENAR--------GKVLKGTISPAL--LKLHDLRHL--DLSNNHF-GGSPVPEFIGSLSRL 111
             A            L   I  +L  L+  + R +   LS   F   + +P     LS +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPT--ILLSLI 395

Query: 112 ----------RYLNLSCGTSLLKVPRPFQYLSGL--VYLRL--ENSNLFSLGSLEWLSHL 157
                       +N     SL++  +P +    +  +YL L  +  N ++L       H 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYAL-------HR 447

Query: 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLD 217
           S + H    Y N+ K+ D                     P ++  F  H  +   ++ ++
Sbjct: 448 SIVDH----Y-NIPKTFDSD---------------DLIPPYLDQYFYSH--IGHHLKNIE 485

Query: 218 LSDNNLPSSSVYPWLFNLSRNILVLDLAF--NSLR---------GSIPEAFQHMVSLKSL 266
             +              L R +  LD  F    +R         GSI    Q +   K  
Sbjct: 486 HPER-----------MTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP- 532

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLP---HNKLSGELSEMIQNLSGGCTMNSLEGVLEI 323
           ++ DN+     PK+   + ++   FLP    N +  + +++++ ++    M   E + E 
Sbjct: 533 YICDND-----PKYERLVNAILD-FLPKIEENLICSKYTDLLR-IA---LMAEDEAIFE- 581

Query: 324 IKSHRAGRK 332
            ++H+  ++
Sbjct: 582 -EAHKQVQR 589

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 45/256 (17%), Positives = 73/256 (28%), Gaps = 58/256 (22%)

Query: 76  ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGL 135
              +   L  LR L+L+         P     ++           ++L   R       L
Sbjct: 64  QRFSAEVLSSLRQLNLAGVRMT----PVKCTVVA-----------AVLGSGR-----HAL 103

Query: 136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA 195
             + L +  L   G    L      R L L   +L   +   + +         +L    
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA--CKDLRD-------LLLHD- 153

Query: 196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN--ILVLDLAFNSLR--- 250
                            I TL LS+N L ++ V   +  L+ N  +  L L    L    
Sbjct: 154 --------------QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG 199

Query: 251 -GSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNM----CSLNRLFLPHNKLSGE----L 301
              +         L+ L++  N                  SL  L L  N+LS E    L
Sbjct: 200 LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259

Query: 302 SEMIQNLSGGCTMNSL 317
            ++     GG  +   
Sbjct: 260 RDLGGAAEGGARVVVS 275

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 9/154 (5%)

Query: 75  TISPALLKLHDLRHLDLSN-NHFGGSPVPEFIGSLSR----LRYLNLSCGTSLLK---VP 126
           +I   L  L D R + L         P+   + SL      LR          L    + 
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456

Query: 127 RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL 186
              QY   + ++ L        G +E+     +L+ L++     ++ +     V KL SL
Sbjct: 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA-IAAAVTKLPSL 515

Query: 187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSD 220
           + L ++           +       +IE +    
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 32/266 (12%), Positives = 79/266 (29%), Gaps = 37/266 (13%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQYLSGLVYL 138
                +L      + +       +++  +   +   L        ++P  F + + +  L
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298

Query: 139 RLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP 198
            L  + L +      +    +L  L+    N+        +    + LK L +   A   
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

Query: 199 INPSFIWHFN---------LSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL 249
                    +             +E + +  +++ + S    L ++   +  L       
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES----LESIGTYLKNL------- 405

Query: 250 RGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN---------KLSGE 300
                  F+ ++  +   +TD  L+ G+         L R                  G+
Sbjct: 406 -----CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460

Query: 301 LSEMIQNLSGGCTMNSLEGVLEIIKS 326
            S  ++ +  G    S EG++E  + 
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEFSRG 486

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSL 266
            +      LDL  N+L   S+   +F+   ++  L L  N L+ S+P   F  + SL  L
Sbjct: 25  GIPAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYL 81

Query: 267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
           +L+ N+L+      F  +  L  L L  N+L
Sbjct: 82  NLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLD 217
           +   +LDL   +L    +   V  +L SL  L L    L  + P+ +  FN  TS+  L+
Sbjct: 28  AQTTYLDLETNSLKSLPN--GVFDELTSLTQLYLGGNKLQSL-PNGV--FNKLTSLTYLN 82

Query: 218 LSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE-AFQHMVSLKSLHLTDNELEGG 276
           LS N L   S+   +F+    +  L L  N L+ S+P+  F  +  LK L L  N+L+  
Sbjct: 83  LSTNQL--QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-S 138

Query: 277 IPK-FFGNMCSLNRLFLPHN 295
           +P   F  + SL  ++L  N
Sbjct: 139 VPDGVFDRLTSLQYIWLHDN 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.39
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.26

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.9e-39  Score=285.05  Aligned_cols=293  Identities=26%  Similarity=0.361  Sum_probs=248.0

Q ss_pred             cCCCHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCcc--ccceEEcCCC--CcEEEEEcCCCCcccccCccccc--cc
Q 019237            3 MRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCK--WRGVRCSNKT--GHVKVLNLRRSDDENARGKVLKG--TI   76 (344)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~--~~~~~c~~~~--~~l~~l~l~~~~~~~~~~~~~~~--~~   76 (344)
                      +.|.+.|++||++|++++.+|. ...+|+   .+.++|.  |.|++|....  ++++.|+++++        .+.+  .+
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~--------~l~~~~~~   68 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPI   68 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC--------CCSSCEEC
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCC--------CccCCccc
Confidence            3699999999999999998876 678997   5778998  9999997544  89999999999        7888  89


Q ss_pred             chhhhcCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhh
Q 019237           77 SPALLKLHDLRHLDLSN-NHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLS  155 (344)
Q Consensus        77 ~~~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~  155 (344)
                      |..+.++++|++|++++ |.+.+. +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+... .+..+.
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~  146 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSIS  146 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGG
T ss_pred             ChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHh
Confidence            99999999999999995 888876 889999999999999999999999999999999999999999998832 236788


Q ss_pred             cCCCCCEEEccccccCCCCchHHHHhhcc-cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhh
Q 019237          156 HLSSLRHLDLSYINLTKSSDWFQVVAKLR-SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN  234 (344)
Q Consensus       156 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  234 (344)
                      .+++|++|++++|.+.+..+  ..+..++ .|++|++++|.+.+..+.   .+..+. |++|++++|.+.+  ..+..+.
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N~l~~--~~~~~~~  218 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPP---TFANLN-LAFVDLSRNMLEG--DASVLFG  218 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEEEEECCG---GGGGCC-CSEEECCSSEEEE--CCGGGCC
T ss_pred             cCCCCCeEECcCCcccCcCC--HHHhhhhhcCcEEECcCCeeeccCCh---HHhCCc-ccEEECcCCcccC--cCCHHHh
Confidence            99999999999999874422  3677777 999999999998865543   234434 9999999999843  3445556


Q ss_pred             ccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----
Q 019237          235 LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----  310 (344)
Q Consensus       235 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----  310 (344)
                      .+++|+.|++++|.+++.++. +..+++|++|++++|++++.+|..+..+++|+.|+|++|.+++.+|.. ..+++    
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l  296 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS  296 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred             cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence            667999999999999866665 778899999999999999889999999999999999999999888875 44444    


Q ss_pred             cccccc-ccc
Q 019237          311 GCTMNS-LEG  319 (344)
Q Consensus       311 ~l~~n~-l~~  319 (344)
                      ++++|+ +.|
T Consensus       297 ~l~~N~~lc~  306 (313)
T 1ogq_A          297 AYANNKCLCG  306 (313)
T ss_dssp             GTCSSSEEES
T ss_pred             HhcCCCCccC
Confidence            888888 444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-37  Score=306.44  Aligned_cols=313  Identities=25%  Similarity=0.357  Sum_probs=181.0

Q ss_pred             ccCCCHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccc---cch
Q 019237            2 VMRCIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGT---ISP   78 (344)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~---~~~   78 (344)
                      ++.+.+.|++||++|++++.||. ...+|+   .+++||.|.||+|+  .++|+.++|+++        .+.|.   +|+
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~--------~l~g~~~~l~~   71 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSK--------PLNVGFSAVSS   71 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTS--------CCCEEHHHHHH
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCC--------CcCCccCccCh
Confidence            45567889999999999998888 889998   67899999999997  689999999998        55555   565


Q ss_pred             hhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCc--ccccCCCCcEEEccCCCCCCCCchhhhhc
Q 019237           79 ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPR--PFQYLSGLVYLRLENSNLFSLGSLEWLSH  156 (344)
Q Consensus        79 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~--~~~~l~~L~~L~ls~~~l~~~~~~~~l~~  156 (344)
                      ++.+++.|+.++++.+.+..  ++..++.+++|++|++++|.+.+.+|.  .++++++|++|++++|.+........+..
T Consensus        72 ~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  149 (768)
T 3rgz_A           72 SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK  149 (768)
T ss_dssp             HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCC
T ss_pred             hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhcc
Confidence            55555555555555554422  334455555555555555555554444  45555555555555554432221111234


Q ss_pred             CCCCCEEEccccccCCCCchH-HHH----------------------hhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237          157 LSSLRHLDLSYINLTKSSDWF-QVV----------------------AKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI  213 (344)
Q Consensus       157 ~~~L~~L~l~~~~~~~~~~~~-~~l----------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  213 (344)
                      +++|++|++++|.+....... ..+                      ..+++|++|++++|.+.+..+.    +..+++|
T Consensus       150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L  225 (768)
T 3rgz_A          150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF----LGDCSAL  225 (768)
T ss_dssp             CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB----CTTCCSC
T ss_pred             CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc----cccCCCC
Confidence            445555555555444332100 113                      3444555555555554443331    3334555


Q ss_pred             cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCC-CCCCEEeC
Q 019237          214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNM-CSLNRLFL  292 (344)
Q Consensus       214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~L  292 (344)
                      ++|++++|.+.+ . .+.....+++|++|++++|.+++.+|..  .+++|++|++++|++++.+|..+... ++|+.|++
T Consensus       226 ~~L~Ls~n~l~~-~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          226 QHLDISGNKLSG-D-FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             CEEECCSSCCCS-C-HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred             CEEECcCCcCCC-c-ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence            555555555532 2 2222233345555555555555444433  45555555555555555566655543 77777777


Q ss_pred             CCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          293 PHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       293 ~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      ++|.+++.+|..+..++.    ++++|+++|.+|..     ....+++|+.|+++
T Consensus       302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-----~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-----TLLKMRGLKVLDLS  351 (768)
T ss_dssp             CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-----HHTTCTTCCEEECC
T ss_pred             cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-----HHhcCCCCCEEeCc
Confidence            777777777776666655    67777777666632     12357777777765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-35  Score=287.16  Aligned_cols=280  Identities=17%  Similarity=0.247  Sum_probs=208.5

Q ss_pred             CHHHHHHHHHhHhhcccc-CCCC-------CCCCCCCCCCCCccc---cceEEcCCCCcEEEEEcCCCCcccccCccccc
Q 019237            6 IDEEREALLTFKQSMVDK-YGVL-------SSWGRDNDKRDCCKW---RGVRCSNKTGHVKVLNLRRSDDENARGKVLKG   74 (344)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~-~~~~-------~~w~~~~~~~~~c~~---~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~   74 (344)
                      ...|+.||.+|++++.++ +.+.       ..|+   .+.++|.|   .||+|+.. ++|+.|+|+++        .+.|
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~--------~l~g   95 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGF--------GASG   95 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTS--------CCEE
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCc--------ccCC
Confidence            346899999999999544 3322       2798   57899999   99999644 89999999999        8889


Q ss_pred             ccchhhhcCCCCCEEeCCCCCC------CC--------------------------------------------------
Q 019237           75 TISPALLKLHDLRHLDLSNNHF------GG--------------------------------------------------   98 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~------~~--------------------------------------------------   98 (344)
                      .+|++++++++|++|++++|.+      .+                                                  
T Consensus        96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~  175 (636)
T 4eco_A           96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI  175 (636)
T ss_dssp             EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred             cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence            9999999999999999998843      00                                                  


Q ss_pred             --------------------CCccccccCCCCCcEEEccCCcCCCc-----------------CCcccc--cCCCCcEEE
Q 019237           99 --------------------SPVPEFIGSLSRLRYLNLSCGTSLLK-----------------VPRPFQ--YLSGLVYLR  139 (344)
Q Consensus        99 --------------------~~~~~~l~~l~~L~~L~Ls~~~~~~~-----------------~~~~~~--~l~~L~~L~  139 (344)
                                          .++|..++++++|++|++++|.+.+.                 +|..+.  ++++|++|+
T Consensus       176 ~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~  255 (636)
T 4eco_A          176 KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE  255 (636)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence                                01567788899999999999998875                 899988  999999999


Q ss_pred             ccCCCCCCCCchhhhhcCCCCCEEEccccc-cCCCCchHHHHhhc------ccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237          140 LENSNLFSLGSLEWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKL------RSLKTLVLRSCALPPINPSFIWHFNLSTS  212 (344)
Q Consensus       140 ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~l~~~------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  212 (344)
                      +++|.+.. ..+..+..+++|++|++++|. +.+. .++..+..+      ++|++|++++|.+...+.  ...+..+++
T Consensus       256 L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~--~~~l~~l~~  331 (636)
T 4eco_A          256 VYNCPNLT-KLPTFLKALPEMQLINVACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV--ETSLQKMKK  331 (636)
T ss_dssp             EECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC--HHHHTTCTT
T ss_pred             ecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccc-cchHHHHhhhccccCCCCCEEECCCCcCCccCc--hhhhccCCC
Confidence            99998774 334778889999999999997 6541 123455554      899999999998885443  113555678


Q ss_pred             ccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCC-CCEEEccCCccCCCccccccCCC--CCCE
Q 019237          213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVS-LKSLHLTDNELEGGIPKFFGNMC--SLNR  289 (344)
Q Consensus       213 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~l~--~L~~  289 (344)
                      |++|++++|.+.+ .++  .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|+.
T Consensus       332 L~~L~L~~N~l~g-~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~  406 (636)
T 4eco_A          332 LGMLECLYNQLEG-KLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA  406 (636)
T ss_dssp             CCEEECCSCCCEE-ECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred             CCEEeCcCCcCcc-chh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence            8888888888853 444  2334457777777777777 66666777777 777777777776 5666555433  6666


Q ss_pred             EeCCCCcCccccchHHh
Q 019237          290 LFLPHNKLSGELSEMIQ  306 (344)
Q Consensus       290 L~L~~n~l~~~~~~~~~  306 (344)
                      |++++|.+++.+|..+.
T Consensus       407 L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          407 IDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             EECCSSCTTTTTTCSSC
T ss_pred             EECcCCcCCCcchhhhc
Confidence            66666666666555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.9e-33  Score=275.72  Aligned_cols=274  Identities=19%  Similarity=0.269  Sum_probs=197.5

Q ss_pred             CCCHHHHHHHHHhHhhccccCCCCCCCCCCC--CCCCC--ccc------------cceEEcCCCCcEEEEEcCCCCcccc
Q 019237            4 RCIDEEREALLTFKQSMVDKYGVLSSWGRDN--DKRDC--CKW------------RGVRCSNKTGHVKVLNLRRSDDENA   67 (344)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~~~~--c~~------------~~~~c~~~~~~l~~l~l~~~~~~~~   67 (344)
                      .+...|++||++|++++.+|     +|+...  ...++  |.|            .||.|+. .++|+.|+|+++     
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~-----  333 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF-----  333 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT-----
T ss_pred             ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC-----
Confidence            34567899999999999776     776421  12344  999            9999964 689999999999     


Q ss_pred             cCcccccccchhhhcCCCCCEEeC-CCCCCCCC-----------------------------------------------
Q 019237           68 RGKVLKGTISPALLKLHDLRHLDL-SNNHFGGS-----------------------------------------------   99 (344)
Q Consensus        68 ~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~-----------------------------------------------   99 (344)
                         .+.|.+|++++++++|++|+| ++|.+.+.                                               
T Consensus       334 ---~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~  410 (876)
T 4ecn_A          334 ---GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR  410 (876)
T ss_dssp             ---CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred             ---CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence               788999999999999999999 66632111                                               


Q ss_pred             ----------------------------CccccccCCCCCcEEEccCCcCCC-----------------cCCcccc--cC
Q 019237          100 ----------------------------PVPEFIGSLSRLRYLNLSCGTSLL-----------------KVPRPFQ--YL  132 (344)
Q Consensus       100 ----------------------------~~~~~l~~l~~L~~L~Ls~~~~~~-----------------~~~~~~~--~l  132 (344)
                                                  .+|..++++++|+.|+|++|.+.+                 .+|..++  ++
T Consensus       411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L  490 (876)
T 4ecn_A          411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL  490 (876)
T ss_dssp             CTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred             CccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence                                        056678889999999999998887                 3888877  89


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccc-cCCCCchHHHHhhcc-------cCcEEEecCCCCCCCCCchh
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLR-------SLKTLVLRSCALPPINPSFI  204 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~l~~~~-------~L~~L~l~~~~~~~~~~~~~  204 (344)
                      ++|++|++++|.+.. ..+..+..+++|++|++++|. +... .++..+..++       +|+.|++++|.+...+.  .
T Consensus       491 ~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~-~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~--~  566 (876)
T 4ecn_A          491 KDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAA-QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA--S  566 (876)
T ss_dssp             TTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHH-HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC--H
T ss_pred             CCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCcccc-cchHHHHhhhhcccccCCccEEEeeCCcCCccCC--h
Confidence            999999999998764 233778889999999999987 6540 1233445444       88888888888874433  1


Q ss_pred             hccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCC-CCEEEccCCccCCCccccccC
Q 019237          205 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVS-LKSLHLTDNELEGGIPKFFGN  283 (344)
Q Consensus       205 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~  283 (344)
                      ..+..+++|+.|++++|.+.  .++  .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~--~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~  640 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVR--HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA  640 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCC--BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred             hhhhcCCCCCEEECCCCCcc--cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence            13455678888888888773  344  3344557778888887777 67777777777 777777777777 56655544


Q ss_pred             CCC--CCEEeCCCCcCcccc
Q 019237          284 MCS--LNRLFLPHNKLSGEL  301 (344)
Q Consensus       284 l~~--L~~L~L~~n~l~~~~  301 (344)
                      ++.  |+.|+|++|.+++.+
T Consensus       641 ~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          641 KSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             TCSSCEEEEECCSSCTTTTS
T ss_pred             cccCCCCEEECcCCcCCCcc
Confidence            432  555555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=1.1e-32  Score=245.05  Aligned_cols=274  Identities=18%  Similarity=0.248  Sum_probs=211.8

Q ss_pred             cCCCHHHHHHHHHhHhhc-cccCCCCCCCCCC-CCCCCCccccceEEc--------CCCCcEEEEEcCCCCcccccCccc
Q 019237            3 MRCIDEEREALLTFKQSM-VDKYGVLSSWGRD-NDKRDCCKWRGVRCS--------NKTGHVKVLNLRRSDDENARGKVL   72 (344)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~-~~~~~~c~~~~~~c~--------~~~~~l~~l~l~~~~~~~~~~~~~   72 (344)
                      +.+...+++||.+|++.+ .++..+...|... ....++|.|.|+.|.        ....+++.|+++++        .+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n--------~l   93 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV--------PL   93 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS--------CC
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC--------Cc
Confidence            456677899999999998 6787777889411 157789999999984        23478999999998        56


Q ss_pred             ccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchh
Q 019237           73 KGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLE  152 (344)
Q Consensus        73 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~  152 (344)
                      . .+|..+.++++|++|++++|.++.  +|..++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.... +.
T Consensus        94 ~-~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~-p~  168 (328)
T 4fcg_A           94 P-QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL-PE  168 (328)
T ss_dssp             S-SCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC-CS
T ss_pred             h-hcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc-Ch
Confidence            5 678888889999999999999883  8888889999999999988877 77888999999999999997655322 12


Q ss_pred             hh---------hcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237          153 WL---------SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL  223 (344)
Q Consensus       153 ~l---------~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  223 (344)
                      .+         ..+++|++|++++|.+...+.   .+..+++|++|++++|.+.+.++    .+..+++|++|++++|.+
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA---SIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRGCTA  241 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEECCCCCCG---GGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTTCTT
T ss_pred             hHhhccchhhhccCCCCCEEECcCCCcCcchH---hhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcCCcc
Confidence            23         348888888888888775543   57788888888888888876554    345567888888888877


Q ss_pred             CCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237          224 PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      .+ .++. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       242 ~~-~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          242 LR-NYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CC-BCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hh-hhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            54 3333 3444557888888888877788888888888888888888888788888888888888888776655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=9.5e-31  Score=257.93  Aligned_cols=257  Identities=28%  Similarity=0.398  Sum_probs=219.0

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ..++.+++++|        .+.+.+|..+.++++|++|++++|.+++. +|..++.+++|++|++++|.+.+.+|..+..
T Consensus       394 ~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  464 (768)
T 3rgz_A          394 NTLQELYLQNN--------GFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMY  464 (768)
T ss_dssp             CCCCEEECCSS--------EEEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             CCccEEECCCC--------ccccccCHHHhcCCCCCEEECcCCcccCc-ccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence            34666666666        78888999999999999999999998876 8888999999999999999999999999999


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++|++|++++|.+.... +..+..+++|++|++++|.+.+..+  ..+..+++|++|++++|.+.+..+.   .+..++
T Consensus       465 l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~  538 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIP--KWIGRLENLAILKLSNNSFSGNIPA---ELGDCR  538 (768)
T ss_dssp             CTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEEECCG---GGGGCT
T ss_pred             CCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcCC--hHHhcCCCCCEEECCCCcccCcCCH---HHcCCC
Confidence            999999999999988432 3678899999999999999886543  4678899999999999998865553   355668


Q ss_pred             cccEEEcCCCCCCCCCCcchhhh---------------------------------------------------------
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFN---------------------------------------------------------  234 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~---------------------------------------------------------  234 (344)
                      +|++|++++|.+.+ .++..++.                                                         
T Consensus       539 ~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          539 SLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCEEECCCCccCC-cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            99999999998754 44433321                                                         


Q ss_pred             ------------ccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237          235 ------------LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       235 ------------~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                                  ..+.|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..++.+++|+.|+|++|.++|.+|
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence                        13468899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhccC----cccccccccccccc
Q 019237          303 EMIQNLSG----GCTMNSLEGVLEII  324 (344)
Q Consensus       303 ~~~~~l~~----~l~~n~l~~~~~~~  324 (344)
                      ..+..+..    ++++|+++|.+|..
T Consensus       698 ~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          698 QAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             hHHhCCCCCCEEECcCCcccccCCCc
Confidence            99998877    99999999999954

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.3e-30  Score=242.17  Aligned_cols=292  Identities=24%  Similarity=0.242  Sum_probs=189.4

Q ss_pred             CCCccccc--eEEcCCC--------CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237           37 RDCCKWRG--VRCSNKT--------GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG  106 (344)
Q Consensus        37 ~~~c~~~~--~~c~~~~--------~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  106 (344)
                      ...|.|.+  +.|....        .++++|+++++        .+.+..|..+.++++|++|++++|.+.....+..+.
T Consensus         5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~   76 (455)
T 3v47_A            5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN--------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR   76 (455)
T ss_dssp             --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS--------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT
T ss_pred             cceeEEEccccCcCCCCcccCCCCCCccCEEEecCC--------ccCcCChhHhccCccccEEECcCCcccceECccccc
Confidence            34555544  6675332        67999999999        677777888999999999999999886541356788


Q ss_pred             CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc-hhhhhcCCCCCEEEccccccCCCCchHHHHhhccc
Q 019237          107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS-LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS  185 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~  185 (344)
                      .+++|++|++++|.+.+..|..+..+++|++|++++|.+..... ...+..+++|++|++++|.+....+ ...+..+++
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~  155 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRR  155 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCTT
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCCc
Confidence            89999999999999888888889999999999999998874211 1237788899999999998877643 123678889


Q ss_pred             CcEEEecCCCCCCCCCchhhcc-------------------------------ccCCcccEEEcCCCCCCC---------
Q 019237          186 LKTLVLRSCALPPINPSFIWHF-------------------------------NLSTSIETLDLSDNNLPS---------  225 (344)
Q Consensus       186 L~~L~l~~~~~~~~~~~~~~~~-------------------------------~~~~~L~~L~l~~n~l~~---------  225 (344)
                      |++|++++|.+.+..+.....+                               ..+++|++|++++|.+.+         
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            9999999888776544322111                               122456666666665521         


Q ss_pred             ----------------------------------------------------CCCcchhhhccCCccEEEccCCcCcCCc
Q 019237          226 ----------------------------------------------------SSVYPWLFNLSRNILVLDLAFNSLRGSI  253 (344)
Q Consensus       226 ----------------------------------------------------~~~~~~~~~~~~~L~~L~ls~n~l~~~~  253 (344)
                                                                          ....+..+..+++|++|++++|.+++..
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence                                                                0111222233345555555555555444


Q ss_pred             hHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccccccccccc
Q 019237          254 PEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRA  329 (344)
Q Consensus       254 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~  329 (344)
                      +..+..+++|++|++++|.+++..+..+..+++|+.|+|++|.+++..|..+..+++    ++++|++++..+..     
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----  390 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI-----  390 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT-----
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH-----
Confidence            555555556666666666555444555555666666666666665555555555444    56666665533322     


Q ss_pred             ccccCCCCcceEec
Q 019237          330 GRKSMRPLDWIAIA  343 (344)
Q Consensus       330 ~~~~l~~L~~l~l~  343 (344)
                       ...+++|+.|+++
T Consensus       391 -~~~l~~L~~L~l~  403 (455)
T 3v47_A          391 -FDRLTSLQKIWLH  403 (455)
T ss_dssp             -TTTCTTCCEEECC
T ss_pred             -hccCCcccEEEcc
Confidence             2356666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.9e-28  Score=216.98  Aligned_cols=282  Identities=19%  Similarity=0.227  Sum_probs=225.3

Q ss_pred             CCCCccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237           36 KRDCCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG  106 (344)
Q Consensus        36 ~~~~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  106 (344)
                      ....|.|+.+.|...         .+.++.|+++++        .+++..+..+.++++|++|++++|.++.. .+..++
T Consensus        27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~   97 (330)
T 1xku_A           27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN--------KITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFA   97 (330)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS--------CCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTT
T ss_pred             CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCC--------cCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhc
Confidence            334578888888531         257889999998        67776677899999999999999999875 588899


Q ss_pred             CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC
Q 019237          107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL  186 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L  186 (344)
                      .+++|++|++++|.+. .+|..+.  ++|++|++++|.+...+. ..+..+++|++|++++|.+.........+..+++|
T Consensus        98 ~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A           98 PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence            9999999999988876 4565554  799999999999986553 66889999999999999986532223467889999


Q ss_pred             cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEE
Q 019237          187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL  266 (344)
Q Consensus       187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  266 (344)
                      ++|++++|.+...+...      .++|++|++++|.+.  .+.+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus       174 ~~L~l~~n~l~~l~~~~------~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  245 (330)
T 1xku_A          174 SYIRIADTNITTIPQGL------PPSLTELHLDGNKIT--KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  245 (330)
T ss_dssp             CEEECCSSCCCSCCSSC------CTTCSEEECTTSCCC--EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             CEEECCCCccccCCccc------cccCCEEECCCCcCC--ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence            99999999998766421      279999999999994  3444555666799999999999997777789999999999


Q ss_pred             EccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhc------cC----cccccccccccccccccccccccCCC
Q 019237          267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNL------SG----GCTMNSLEGVLEIIKSHRAGRKSMRP  336 (344)
Q Consensus       267 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l------~~----~l~~n~l~~~~~~~~~~~~~~~~l~~  336 (344)
                      ++++|+++ .+|..+..+++|+.|++++|.+++..+..++..      ..    ++++|++....    ........++.
T Consensus       246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~----i~~~~f~~~~~  320 (330)
T 1xku_A          246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE----IQPSTFRCVYV  320 (330)
T ss_dssp             ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG----SCGGGGTTCCC
T ss_pred             ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc----cCccccccccc
Confidence            99999999 788889999999999999999997766666543      11    68888875311    11134557888


Q ss_pred             CcceEec
Q 019237          337 LDWIAIA  343 (344)
Q Consensus       337 L~~l~l~  343 (344)
                      |+.+++.
T Consensus       321 l~~l~L~  327 (330)
T 1xku_A          321 RAAVQLG  327 (330)
T ss_dssp             GGGEEC-
T ss_pred             eeEEEec
Confidence            8888875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=8.4e-29  Score=231.43  Aligned_cols=277  Identities=21%  Similarity=0.237  Sum_probs=168.4

Q ss_pred             CcEEEEEcCCCCccc----------------ccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEE
Q 019237           52 GHVKVLNLRRSDDEN----------------ARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLN  115 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~----------------~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  115 (344)
                      ..++.|+++++.+..                +.++.+.+..|..|.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEE
Confidence            467777777773321                111233333344444455555555555544432 222344455555555


Q ss_pred             ccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCC
Q 019237          116 LSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA  195 (344)
Q Consensus       116 Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  195 (344)
                      +++|.+.+..+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.....  ..+..+++|+.|++++|.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCc
Confidence            55555444444445555555555555555443221 334555566666666665554432  345666666666666666


Q ss_pred             CCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237          196 LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG  275 (344)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  275 (344)
                      +....+   ..+..+++|+.|++++|...+ .+++...... +|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       188 i~~~~~---~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          188 INAIRD---YSFKRLYRLKVLEISHWPYLD-TMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             CCEECT---TCSCSCTTCCEEEEECCTTCC-EECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred             CcEeCh---hhcccCcccceeeCCCCcccc-ccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence            555433   234455677777777766543 3444444333 78888888888885555678888889999999888886


Q ss_pred             CccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          276 GIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       276 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      ..+..+..+++|+.|+|++|.+++..|..+..+++    ++++|++++..+...      ..+++|+.|+++
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~  328 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF------HSVGNLETLILD  328 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB------SCGGGCCEEECC
T ss_pred             cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc------CCCcccCEEEcc
Confidence            66667888888888999888888777777777666    888888887655433      356777777765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=3.4e-28  Score=221.55  Aligned_cols=266  Identities=20%  Similarity=0.247  Sum_probs=185.5

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      .+++.++++++        .+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..|..+..
T Consensus        45 ~~l~~l~l~~~--------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           45 NNQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             CCCSEEEEESC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCceEEEecCC--------chhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence            45666666666        55543344467788888888888877664 4456777888888888888777777777777


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcc----
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHF----  207 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----  207 (344)
                      +++|++|++++|.+...+. ..+..+++|++|++++|.+.....  ..+..+++|++|++++|.+..........+    
T Consensus       116 l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~  192 (390)
T 3o6n_A          116 VPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN  192 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT--TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccCh--hhccCCCCCCEEECCCCcCCccccccccccceee
Confidence            8888888888887775553 335677788888888887766543  346677778888887777665432110000    


Q ss_pred             ------------------------------ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhh
Q 019237          208 ------------------------------NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF  257 (344)
Q Consensus       208 ------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  257 (344)
                                                    ...++|+.|++++|.+.+   .+ ....+++|++|++++|.+++..|..+
T Consensus       193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TA-WLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC---CG-GGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc---cH-HHcCCCCccEEECCCCcCCCcChhHc
Confidence                                          011356666666666633   12 33455688999999998887778888


Q ss_pred             hcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccccccccccccccc
Q 019237          258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKS  333 (344)
Q Consensus       258 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~  333 (344)
                      ..+++|++|++++|+++ .++..+..+++|+.|++++|.++ .+|..+..++.    ++++|+++.. +        ...
T Consensus       269 ~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--------~~~  337 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--------LST  337 (390)
T ss_dssp             TTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--------CCT
T ss_pred             cccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--------chh
Confidence            88889999999999888 56666777889999999999888 45655665555    8888888654 2        346


Q ss_pred             CCCCcceEecC
Q 019237          334 MRPLDWIAIAY  344 (344)
Q Consensus       334 l~~L~~l~l~~  344 (344)
                      +++|+.|++++
T Consensus       338 ~~~L~~L~l~~  348 (390)
T 3o6n_A          338 HHTLKNLTLSH  348 (390)
T ss_dssp             TCCCSEEECCS
T ss_pred             hccCCEEEcCC
Confidence            78888888753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.9e-28  Score=218.45  Aligned_cols=277  Identities=19%  Similarity=0.234  Sum_probs=221.8

Q ss_pred             CCccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCC
Q 019237           38 DCCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSL  108 (344)
Q Consensus        38 ~~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  108 (344)
                      ..|.|..+.|...         .++++.|+++++        .+.+..|..+.++++|++|++++|.++.. .+..++.+
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l  101 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN--------DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPL  101 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCC--------cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCc
Confidence            3478998888532         257899999998        67766677899999999999999999875 57889999


Q ss_pred             CCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcE
Q 019237          109 SRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT  188 (344)
Q Consensus       109 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~  188 (344)
                      ++|++|++++|.+. .+|..+.  ++|++|++++|.+...+. ..+..+++|++|++++|.+.........+..+ +|+.
T Consensus       102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A          102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY  176 (332)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred             CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence            99999999988876 5565554  799999999999987654 56888999999999999886421112345555 8999


Q ss_pred             EEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEc
Q 019237          189 LVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHL  268 (344)
Q Consensus       189 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l  268 (344)
                      |++++|.+...+...      .++|++|++++|.+.  .+.+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus       177 L~l~~n~l~~l~~~~------~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          177 LRISEAKLTGIPKDL------PETLNELHLDHNKIQ--AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             CBCCSSBCSSCCSSS------CSSCSCCBCCSSCCC--CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             EECcCCCCCccCccc------cCCCCEEECCCCcCC--ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence            999999998866521      278999999999994  444445556679999999999999877888999999999999


Q ss_pred             cCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhcc---------C-cccccccc--cccccccccccccccCCC
Q 019237          269 TDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS---------G-GCTMNSLE--GVLEIIKSHRAGRKSMRP  336 (344)
Q Consensus       269 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~---------~-~l~~n~l~--~~~~~~~~~~~~~~~l~~  336 (344)
                      ++|+++ .+|..+..+++|+.|++++|.+++..+..++...         . ++++|++.  +..|.      ....++.
T Consensus       249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~------~~~~l~~  321 (332)
T 2ft3_A          249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA------TFRCVTD  321 (332)
T ss_dssp             CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG------GGTTBCC
T ss_pred             CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc------cccccch
Confidence            999999 7888899999999999999999977666666542         1 78888876  33343      3447888


Q ss_pred             CcceEec
Q 019237          337 LDWIAIA  343 (344)
Q Consensus       337 L~~l~l~  343 (344)
                      |+.+++.
T Consensus       322 L~~l~l~  328 (332)
T 2ft3_A          322 RLAIQFG  328 (332)
T ss_dssp             STTEEC-
T ss_pred             hhhhhcc
Confidence            8888875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=4.3e-29  Score=232.00  Aligned_cols=134  Identities=21%  Similarity=0.188  Sum_probs=107.7

Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      +|+.|++++|.+.+..+   ..+..+++|++|++++|.+.  .+.+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       276 ~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLK---SVFSHFTDLEQLTLAQNEIN--KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             CCCEEECCSSCCCEECT---TTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             CceEEEecCccccccch---hhcccCCCCCEEECCCCccc--ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence            44444444444444332   23566689999999999994  44454556667999999999999978889999999999


Q ss_pred             EEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccccc
Q 019237          265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEI  323 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~  323 (344)
                      +|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++    ++++|++++..|.
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999999999777889999999999999999999766666666666    9999999999884

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=9.4e-29  Score=231.09  Aligned_cols=266  Identities=20%  Similarity=0.181  Sum_probs=210.8

Q ss_pred             cccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCC
Q 019237           64 DENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS  143 (344)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~  143 (344)
                      ..++.++.+.+..+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus        36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred             EEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence            346777788877788888999999999999988775 5777888899999999988877666667788899999999999


Q ss_pred             CCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237          144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL  223 (344)
Q Consensus       144 ~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  223 (344)
                      .+..... ..+..+++|++|++++|.+.....  ..+..+++|++|++++|.+...+.   ..+..+++|+.|++++|.+
T Consensus       115 ~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          115 KIVILLD-YMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSIPT---EALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             CCCEECT-TTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCCCSSCCH---HHHTTCTTCCEEEEESCCC
T ss_pred             ccccCCh-hHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCcCcccCh---hHhcccCCCcEEeCCCCcC
Confidence            8875432 567788899999999988776543  356788899999999998877654   2456668899999999888


Q ss_pred             CCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccch
Q 019237          224 PSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSE  303 (344)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  303 (344)
                      .  .+.+..+..+++|++|++++|.+.+.++.......+|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+.
T Consensus       189 ~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  266 (477)
T 2id5_A          189 N--AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS  266 (477)
T ss_dssp             C--EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred             c--EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence            3  44454556667899999999887777776666667899999999999854446788999999999999999977777


Q ss_pred             HHhhccC----cccccccccccccccccccccccCCCCcceEecC
Q 019237          304 MIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY  344 (344)
Q Consensus       304 ~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~~  344 (344)
                      .+..+++    ++++|++++..|...      ..+++|+.|+|++
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~  305 (477)
T 2id5_A          267 MLHELLRLQEIQLVGGQLAVVEPYAF------RGLNYLRVLNVSG  305 (477)
T ss_dssp             SCTTCTTCCEEECCSSCCSEECTTTB------TTCTTCCEEECCS
T ss_pred             hccccccCCEEECCCCccceECHHHh------cCcccCCEEECCC
Confidence            7777666    899999998777544      3788999998863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=8.1e-28  Score=230.67  Aligned_cols=265  Identities=20%  Similarity=0.243  Sum_probs=189.7

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL  132 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l  132 (344)
                      .++.++++++        .+....+..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+.+..|..|+.+
T Consensus        52 ~l~~l~l~~~--------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           52 NQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             CCSEEEESSC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CceEEEeeCC--------CCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            3455555555        66554455567788888888888887764 44577778888888888888777777777888


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcc-----
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHF-----  207 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----  207 (344)
                      ++|++|++++|.+...+. ..+..+++|++|++++|.+....+  ..+..+++|+.|++++|.+.+.+......+     
T Consensus       123 ~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l  199 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV  199 (597)
T ss_dssp             TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhc
Confidence            888888888888775553 345677888888888887766543  356777788888888877765432110000     


Q ss_pred             -----------------------------ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhh
Q 019237          208 -----------------------------NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ  258 (344)
Q Consensus       208 -----------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  258 (344)
                                                   ...++|+.|++++|.+.+   ++ ....+++|+.|++++|.+++..|..+.
T Consensus       200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~---~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TA-WLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC---CG-GGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC---Ch-hhccCCCCCEEECCCCccCCCCHHHhc
Confidence                                         011346666666666643   22 344556899999999999888888888


Q ss_pred             cCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccccccC
Q 019237          259 HMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSM  334 (344)
Q Consensus       259 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l  334 (344)
                      .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..++.    ++++|.+++..         ...+
T Consensus       276 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~  344 (597)
T 3oja_B          276 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---------LSTH  344 (597)
T ss_dssp             TCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---------CCTT
T ss_pred             CccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---------hhhc
Confidence            8999999999999988 46777778899999999999988 56766766666    89999887642         3467


Q ss_pred             CCCcceEecC
Q 019237          335 RPLDWIAIAY  344 (344)
Q Consensus       335 ~~L~~l~l~~  344 (344)
                      +.|+.|++++
T Consensus       345 ~~L~~L~l~~  354 (597)
T 3oja_B          345 HTLKNLTLSH  354 (597)
T ss_dssp             CCCSEEECCS
T ss_pred             CCCCEEEeeC
Confidence            8888888763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=6.9e-28  Score=231.76  Aligned_cols=271  Identities=21%  Similarity=0.198  Sum_probs=156.3

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL  132 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l  132 (344)
                      .++.++++++        .+.+..+..+..+++|++|++++|.++.  +|..+..+++|++|++++|.+.+..|..+..+
T Consensus       255 ~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          255 SVESINLQKH--------YFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             EEEEEECTTC--------CCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             ceeEEEeecC--------ccCccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence            5777777777        4444444556666666666666666653  55555666666666666666555555555555


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH------------------------HHHhhcccCcE
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF------------------------QVVAKLRSLKT  188 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------------------------~~l~~~~~L~~  188 (344)
                      ++|++|++++|.+........+..+++|++|++++|.+.......                        ..+..+++|++
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  404 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL  404 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred             CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence            555555555555442111123444555555555555444332111                        23344455555


Q ss_pred             EEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCC---chHhhhcCCCCCE
Q 019237          189 LVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGS---IPEAFQHMVSLKS  265 (344)
Q Consensus       189 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~~~~~~~L~~  265 (344)
                      |++++|.+.+..+  ...+..+++|++|++++|.+.  ...+..+..+++|++|++++|.+++.   .+..+..+++|+.
T Consensus       405 L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          405 LDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHSLLD--ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             EECTTCCEECCTT--CCTTTTCTTCCEEECTTCCCB--TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             EECCCCcCCCccc--chhhhCcccCCEEECCCCccC--CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence            5555554443322  112344466666666666663  23333344455677777777766642   2245666777777


Q ss_pred             EEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC---cccccccccccccccccccccccCCCCcceEe
Q 019237          266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG---GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAI  342 (344)
Q Consensus       266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l  342 (344)
                      |++++|++++..|..+..+++|+.|+|++|.+++..|..+..++.   ++++|++++..|....      .+++|+.+++
T Consensus       481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~------~l~~L~~L~l  554 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP------ILSQQRTINL  554 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHH------HHHTSSEEEC
T ss_pred             EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcc------cCCCCCEEeC
Confidence            777777777655666777777777777777777777777766665   6777777766654332      5667777776


Q ss_pred             c
Q 019237          343 A  343 (344)
Q Consensus       343 ~  343 (344)
                      .
T Consensus       555 ~  555 (606)
T 3t6q_A          555 R  555 (606)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=4.2e-28  Score=233.29  Aligned_cols=247  Identities=21%  Similarity=0.221  Sum_probs=185.0

Q ss_pred             ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcC--CcccccCCCCcEEEccCCCCCCC
Q 019237           71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV--PRPFQYLSGLVYLRLENSNLFSL  148 (344)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~--~~~~~~l~~L~~L~ls~~~l~~~  148 (344)
                      .+.+..|..+..+++|++|++++|.+.....+..+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+...
T Consensus       312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  391 (606)
T 3t6q_A          312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL  391 (606)
T ss_dssp             CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred             CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence            4444445556666666666666665553312233566666777777766665544  55666777777777777776543


Q ss_pred             CchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCC
Q 019237          149 GSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSV  228 (344)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  228 (344)
                      . +..+..+++|++|++++|.+..... ...+..+++|++|++++|.+....+.   .+..+++|++|++++|.+.+..+
T Consensus       392 ~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~  466 (606)
T 3t6q_A          392 K-TEAFKECPQLELLDLAFTRLKVKDA-QSPFQNLHLLKVLNLSHSLLDISSEQ---LFDGLPALQHLNLQGNHFPKGNI  466 (606)
T ss_dssp             C-TTTTTTCTTCSEEECTTCCEECCTT-CCTTTTCTTCCEEECTTCCCBTTCTT---TTTTCTTCCEEECTTCBCGGGEE
T ss_pred             C-HHHhcCCccCCeEECCCCcCCCccc-chhhhCcccCCEEECCCCccCCcCHH---HHhCCCCCCEEECCCCCCCcccc
Confidence            2 2556778888888888888765532 12467899999999999998876653   35667999999999999854112


Q ss_pred             c-chhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhh
Q 019237          229 Y-PWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQN  307 (344)
Q Consensus       229 ~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  307 (344)
                      + ......+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..++.| .|++++|.+++..|..+..
T Consensus       467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~  545 (606)
T 3t6q_A          467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI  545 (606)
T ss_dssp             CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH
T ss_pred             ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc
Confidence            1 1345566799999999999998889999999999999999999998889999999999 9999999999888887777


Q ss_pred             ccC----ccccccccccccc
Q 019237          308 LSG----GCTMNSLEGVLEI  323 (344)
Q Consensus       308 l~~----~l~~n~l~~~~~~  323 (344)
                      +++    ++++|++.+..+.
T Consensus       546 l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          546 LSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             HHTSSEEECTTCCEECSGGG
T ss_pred             CCCCCEEeCCCCCccccCCc
Confidence            666    9999999887663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.9e-28  Score=216.53  Aligned_cols=242  Identities=23%  Similarity=0.332  Sum_probs=204.4

Q ss_pred             CCCCEEeCCCCCCCC--CCccccccCCCCCcEEEccC-CcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCC
Q 019237           84 HDLRHLDLSNNHFGG--SPVPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSL  160 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L  160 (344)
                      ..++.|+++++.+.+  . ++..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|.+... .+..+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence            468999999999987  5 888999999999999995 899999999999999999999999999732 22678899999


Q ss_pred             CEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC-cccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237          161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST-SIETLDLSDNNLPSSSVYPWLFNLSRNI  239 (344)
Q Consensus       161 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L  239 (344)
                      ++|++++|.+....+  ..+..+++|++|++++|.+.+..+.   .+..+. +|++|++++|.+.+ .++..+ ... .|
T Consensus       128 ~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~-~~~~~~-~~l-~L  199 (313)
T 1ogq_A          128 VTLDFSYNALSGTLP--PSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTG-KIPPTF-ANL-NL  199 (313)
T ss_dssp             CEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEE-ECCGGG-GGC-CC
T ss_pred             CEEeCCCCccCCcCC--hHHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeec-cCChHH-hCC-cc
Confidence            999999999985533  4788999999999999999854442   234445 89999999999954 444443 444 49


Q ss_pred             cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccc
Q 019237          240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMN  315 (344)
Q Consensus       240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n  315 (344)
                      ++|++++|.+++..+..+..+++|+.|++++|.+++.++. +..+++|++|++++|.+++.+|..+..+++    ++++|
T Consensus       200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            9999999999999999999999999999999999966665 788999999999999999999999988877    99999


Q ss_pred             ccccccccccccccccccCCCCcceEec
Q 019237          316 SLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       316 ~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      +++|.+|..       ..+++|+.+++.
T Consensus       279 ~l~~~ip~~-------~~l~~L~~l~l~  299 (313)
T 1ogq_A          279 NLCGEIPQG-------GNLQRFDVSAYA  299 (313)
T ss_dssp             EEEEECCCS-------TTGGGSCGGGTC
T ss_pred             cccccCCCC-------ccccccChHHhc
Confidence            999998854       356666666553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=2.9e-27  Score=227.39  Aligned_cols=102  Identities=24%  Similarity=0.215  Sum_probs=66.7

Q ss_pred             cccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCC
Q 019237           70 KVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLG  149 (344)
Q Consensus        70 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~  149 (344)
                      +.+.+..|..|.++++|++|++++|.++.. .|..++.+++|++|++++|.+.+..+..++++.+|++|++++|.+....
T Consensus        66 n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           66 CEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence            355555566677777777777777777664 4666667777777777766666555556666667777777776666544


Q ss_pred             chhhhhcCCCCCEEEccccccCC
Q 019237          150 SLEWLSHLSSLRHLDLSYINLTK  172 (344)
Q Consensus       150 ~~~~l~~~~~L~~L~l~~~~~~~  172 (344)
                      .+..+..+++|++|++++|.+..
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCCCE
T ss_pred             chHhHhhcCCCCEEEccCCccee
Confidence            44556667777777776665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=7.3e-27  Score=207.93  Aligned_cols=266  Identities=18%  Similarity=0.133  Sum_probs=215.2

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL  132 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l  132 (344)
                      +++.++++++        .+. .+|..+.  +.+++|++++|.++.. .+..++.+++|++|++++|.+.+..|..+..+
T Consensus        32 ~l~~l~~~~~--------~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (330)
T 1xku_A           32 HLRVVQCSDL--------GLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPL   99 (330)
T ss_dssp             ETTEEECTTS--------CCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCeEEEecCC--------Ccc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence            4678899887        333 3454433  5899999999999885 45578999999999999999998889999999


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS  212 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  212 (344)
                      ++|++|++++|.+...+.  .  ..++|++|++++|.+.....  ..+..+++|++|++++|.+...... ...+..+++
T Consensus       100 ~~L~~L~Ls~n~l~~l~~--~--~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~  172 (330)
T 1xku_A          100 VKLERLYLSKNQLKELPE--K--MPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKK  172 (330)
T ss_dssp             TTCCEEECCSSCCSBCCS--S--CCTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTT
T ss_pred             CCCCEEECCCCcCCccCh--h--hcccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcC-hhhccCCCC
Confidence            999999999999986653  2  23799999999999887653  5688999999999999988642111 234566799


Q ss_pred             ccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeC
Q 019237          213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL  292 (344)
Q Consensus       213 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L  292 (344)
                      |++|++++|.+.  .++..+.   ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus       173 L~~L~l~~n~l~--~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          173 LSYIRIADTNIT--TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  247 (330)
T ss_dssp             CCEEECCSSCCC--SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             cCEEECCCCccc--cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence            999999999983  4554433   58999999999999877899999999999999999999766778899999999999


Q ss_pred             CCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          293 PHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       293 ~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      ++|.++ .+|..+..++.    ++++|++++..+..+.........+.|+.+++.
T Consensus       248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~  301 (330)
T 1xku_A          248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF  301 (330)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             CCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence            999999 77888887766    899999998777555433333446777777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.3e-27  Score=227.11  Aligned_cols=286  Identities=22%  Similarity=0.266  Sum_probs=198.8

Q ss_pred             CccccceEEcCC-----------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccC
Q 019237           39 CCKWRGVRCSNK-----------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGS  107 (344)
Q Consensus        39 ~c~~~~~~c~~~-----------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  107 (344)
                      .|.|.++ |+..           ...+++|+++++        .+.+..|..+.++++|++|++++|.++.. .+..++.
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~   72 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN--------KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS   72 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS--------CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCC--------ccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence            4777776 6422           247999999999        67777788899999999999999999875 5677899


Q ss_pred             CCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237          108 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK  187 (344)
Q Consensus       108 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~  187 (344)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+...+.+..+..+++|++|++++|......+ ...+..+++|+
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~  151 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLN  151 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEE
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccC
Confidence            99999999999998887777799999999999999999866555668889999999999997433211 13577888999


Q ss_pred             EEEecCCCCCCCCCchhhc---------------------cccCCcccEEEcCCCCCCCCCCcc-hh-------------
Q 019237          188 TLVLRSCALPPINPSFIWH---------------------FNLSTSIETLDLSDNNLPSSSVYP-WL-------------  232 (344)
Q Consensus       188 ~L~l~~~~~~~~~~~~~~~---------------------~~~~~~L~~L~l~~n~l~~~~~~~-~~-------------  232 (344)
                      +|++++|.+.+..+.....                     +..+++|++|++++|.+.+..+.+ .+             
T Consensus       152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~  231 (549)
T 2z81_A          152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR  231 (549)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred             eeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence            9999998887643321111                     123577888888888774411000 00             


Q ss_pred             --------------------------------------------------------------------------hhccCC
Q 019237          233 --------------------------------------------------------------------------FNLSRN  238 (344)
Q Consensus       233 --------------------------------------------------------------------------~~~~~~  238 (344)
                                                                                                .....+
T Consensus       232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~  311 (549)
T 2z81_A          232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK  311 (549)
T ss_dssp             SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred             ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence                                                                                      011124


Q ss_pred             ccEEEccCCcCcCCchHhh-hcCCCCCEEEccCCccCCCcc---ccccCCCCCCEEeCCCCcCccccc--hHHhhccC--
Q 019237          239 ILVLDLAFNSLRGSIPEAF-QHMVSLKSLHLTDNELEGGIP---KFFGNMCSLNRLFLPHNKLSGELS--EMIQNLSG--  310 (344)
Q Consensus       239 L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~--  310 (344)
                      |+.|++++|.++ .+|..+ ..+++|+.|++++|++++.+|   ..+..+++|+.|++++|.+++..+  ..+..+++  
T Consensus       312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence            555555555555 444444 567888888888888876553   336677888888888888875432  34555555  


Q ss_pred             --cccccccccccccccccccccccCCCCcceEec
Q 019237          311 --GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       311 --~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                        ++++|++++ +|.      ....+++|+.|+++
T Consensus       391 ~L~Ls~N~l~~-lp~------~~~~~~~L~~L~Ls  418 (549)
T 2z81_A          391 SLDISRNTFHP-MPD------SCQWPEKMRFLNLS  418 (549)
T ss_dssp             EEECTTCCCCC-CCS------CCCCCTTCCEEECT
T ss_pred             EEECCCCCCcc-CCh------hhcccccccEEECC
Confidence              788888874 332      12344555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=5.6e-27  Score=233.32  Aligned_cols=285  Identities=21%  Similarity=0.195  Sum_probs=151.1

Q ss_pred             ccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCc-cccccCCCCCcEEEccC
Q 019237           40 CKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPV-PEFIGSLSRLRYLNLSC  118 (344)
Q Consensus        40 c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~Ls~  118 (344)
                      |.|..+.+  ..++++.|||++|        .+.+..|..+.++++|++|++++|..... + +..+.++++|++|++++
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N--------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFN--------YIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESC--------CCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCC--------cCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCC
Confidence            34444444  3467888888888        44444455555555555555555533322 2 34455555555555555


Q ss_pred             CcCCCcCCcccccCCCCcEEEccCCCCCCC-CchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCC
Q 019237          119 GTSLLKVPRPFQYLSGLVYLRLENSNLFSL-GSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP  197 (344)
Q Consensus       119 ~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  197 (344)
                      |.+.+..|..|..+++|++|++++|.+... +....+..+++|++|++++|.+..... ...+..+++|++|++++|.+.
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCC
Confidence            555555555555555555555555555431 111124445555555555555444321 123445555555555555444


Q ss_pred             CCCCchhhc-----------------------cccC------CcccEEEcCCCCCCCCCCcchhhhc-------------
Q 019237          198 PINPSFIWH-----------------------FNLS------TSIETLDLSDNNLPSSSVYPWLFNL-------------  235 (344)
Q Consensus       198 ~~~~~~~~~-----------------------~~~~------~~L~~L~l~~n~l~~~~~~~~~~~~-------------  235 (344)
                      +..+.....                       +..+      .+|+.|++++|.+.+ ..+..+...             
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-DITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST-TTTSGGGGTSCSCCBSEEECCS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch-hHHHHHHhhcCcccccceeccc
Confidence            332211100                       1111      136777777765532 121111110             


Q ss_pred             ------------------------cCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          236 ------------------------SRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       236 ------------------------~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                                              .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+.++++|+.|+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence                                    13567777777776655566666677777777777777655566666677777777


Q ss_pred             CCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          292 LPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      |++|.+++..|..+.++++    ++++|++.+..+...      ..+++|+.|+++
T Consensus       321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~------~~l~~L~~L~Ls  370 (844)
T 3j0a_A          321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF------KFLEKLQTLDLR  370 (844)
T ss_dssp             EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS------CSCCCCCEEEEE
T ss_pred             CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh------cCCCCCCEEECC
Confidence            7777776665666665555    667776655544322      245666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=2.3e-27  Score=229.00  Aligned_cols=226  Identities=16%  Similarity=0.199  Sum_probs=129.7

Q ss_pred             ccc-ccchhhhcC------CCCCEEeCCCCCCCCCCccc--cccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccC
Q 019237           72 LKG-TISPALLKL------HDLRHLDLSNNHFGGSPVPE--FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLEN  142 (344)
Q Consensus        72 ~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~  142 (344)
                      +++ .+|..++.+      ++|++|++++|.++.  +|.  .++.+++|++|++++|.+.+.+| .+..+++|++|++++
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY  362 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence            555 566666554      666666666666662  555  66677777777777776666666 666666677777777


Q ss_pred             CCCCCCCchhhhhcCCC-CCEEEccccccCCCCchHHHHhh--cccCcEEEecCCCCCCCCCchhhc----cccCCcccE
Q 019237          143 SNLFSLGSLEWLSHLSS-LRHLDLSYINLTKSSDWFQVVAK--LRSLKTLVLRSCALPPINPSFIWH----FNLSTSIET  215 (344)
Q Consensus       143 ~~l~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~L~~  215 (344)
                      |.+...+  ..+..+++ |++|++++|.+...+.   .+..  +++|+.|++++|.+.+..+.....    .-.+.+|++
T Consensus       363 N~l~~lp--~~l~~l~~~L~~L~Ls~N~l~~lp~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          363 NQITEIP--ANFCGFTEQVENLSFAHNKLKYIPN---IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             SEEEECC--TTSEEECTTCCEEECCSSCCSSCCS---CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             Ccccccc--HhhhhhcccCcEEEccCCcCcccch---hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            6666333  44666777 7777777777664432   2232  235666666666665543321110    002346666


Q ss_pred             EEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHh-hhcC-------CCCCEEEccCCccCCCcccccc--CCC
Q 019237          216 LDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEA-FQHM-------VSLKSLHLTDNELEGGIPKFFG--NMC  285 (344)
Q Consensus       216 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~~-------~~L~~L~l~~n~~~~~~~~~l~--~l~  285 (344)
                      |++++|.+  ..++..++..+++|++|++++|.++ .+|.. +...       ++|+.|++++|+++ .+|..+.  .++
T Consensus       438 L~Ls~N~l--~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~  513 (636)
T 4eco_A          438 INLSNNQI--SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP  513 (636)
T ss_dssp             EECCSSCC--CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred             EECcCCcc--CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC
Confidence            66666666  2455555554556666666666665 33322 2211       15666666666655 4555554  556


Q ss_pred             CCCEEeCCCCcCccccchHHhhccC
Q 019237          286 SLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       286 ~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      +|+.|+|++|.+++ +|..+..+++
T Consensus       514 ~L~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          514 YLVGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred             CcCEEECCCCCCCC-cChhhhcCCC
Confidence            66666666666654 5555555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.8e-26  Score=224.89  Aligned_cols=159  Identities=23%  Similarity=0.315  Sum_probs=83.2

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      .+++.|+++++        .+.+..+..+.++++|++|++++|.++.. .+..++.+++|++|++++|.+....+..|.+
T Consensus        25 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHN--------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             TTCSEEECCSS--------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCC--------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence            56788888887        44444444556666666666666655554 4455555666666666655555444344555


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++|++|++++|.+...+. ..+..+++|++|++++|.+.....  ..+..+++|++|++++|.+.+..+...... .++
T Consensus        96 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~  171 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNKIQALKSEELDIF-ANS  171 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCCC--CSSSCCTTCCEEECCSSCCCCBCHHHHGGG-TTC
T ss_pred             CCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccCc--hhhcccccCCEEEccCCcccccCHHHhhcc-ccc
Confidence            5666666666655554332 334555555555555555544321  233445555555555555544332111111 124


Q ss_pred             cccEEEcCCCCC
Q 019237          212 SIETLDLSDNNL  223 (344)
Q Consensus       212 ~L~~L~l~~n~l  223 (344)
                      +|++|++++|.+
T Consensus       172 ~L~~L~L~~n~l  183 (680)
T 1ziw_A          172 SLKKLELSSNQI  183 (680)
T ss_dssp             EESEEECTTCCC
T ss_pred             cccEEECCCCcc
Confidence            455555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.4e-27  Score=207.10  Aligned_cols=270  Identities=22%  Similarity=0.243  Sum_probs=210.1

Q ss_pred             CCccccceEEcCCC---------CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCC-ccccccC
Q 019237           38 DCCKWRGVRCSNKT---------GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSP-VPEFIGS  107 (344)
Q Consensus        38 ~~c~~~~~~c~~~~---------~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~  107 (344)
                      -.|.|.++.|....         ..++.|+++++        .+....+..+.++++|++|++++|.++... .+..+..
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n--------~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~   76 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESN--------KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG   76 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCC--------ccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence            34889999996422         57999999998        566444445789999999999999987521 2456667


Q ss_pred             CCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237          108 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK  187 (344)
Q Consensus       108 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~  187 (344)
                      +++|++|++++|.+. .+|..+..+++|++|++++|.+...+....+..+++|++|++++|.+.....  ..+..+++|+
T Consensus        77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~  153 (306)
T 2z66_A           77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLE  153 (306)
T ss_dssp             CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--TTTTTCTTCC
T ss_pred             ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--hhcccCcCCC
Confidence            999999999988776 4666788999999999999998877654568889999999999998876543  4577889999


Q ss_pred             EEEecCCCCCC-CCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEE
Q 019237          188 TLVLRSCALPP-INPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL  266 (344)
Q Consensus       188 ~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  266 (344)
                      +|++++|.+.+ ..+   ..+..+++|++|++++|.+.  .+.+..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus       154 ~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          154 VLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             EEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             EEECCCCccccccch---hHHhhCcCCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            99999998765 222   24566789999999999984  4445555566799999999999997777788899999999


Q ss_pred             EccCCccCCCccccccCCC-CCCEEeCCCCcCcccc-----chHHhhccC-ccccccccccccc
Q 019237          267 HLTDNELEGGIPKFFGNMC-SLNRLFLPHNKLSGEL-----SEMIQNLSG-GCTMNSLEGVLEI  323 (344)
Q Consensus       267 ~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~-----~~~~~~l~~-~l~~n~l~~~~~~  323 (344)
                      ++++|++++..+..+..++ +|+.|+|++|.++...     +.++.+... .+..+.+....|.
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            9999999988888888885 9999999999998653     233333333 4455666665553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.8e-27  Score=211.07  Aligned_cols=250  Identities=22%  Similarity=0.307  Sum_probs=194.0

Q ss_pred             CCCCCccccceEEcCC-----------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccc
Q 019237           35 DKRDCCKWRGVRCSNK-----------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPE  103 (344)
Q Consensus        35 ~~~~~c~~~~~~c~~~-----------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  103 (344)
                      .+...|.|.++ |+..           ..+++.|+++++        .+++..+..+.++++|++|++++|.++.. .+.
T Consensus        25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~   94 (353)
T 2z80_A           25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN--------RITYISNSDLQRCVNLQALVLTSNGINTI-EED   94 (353)
T ss_dssp             --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTT
T ss_pred             ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC--------cCcccCHHHhccCCCCCEEECCCCccCcc-CHh
Confidence            56678999876 5421           247899999998        66665566899999999999999999875 566


Q ss_pred             cccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccc-cCCCCchHHHHhh
Q 019237          104 FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAK  182 (344)
Q Consensus       104 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~l~~  182 (344)
                      .++.+++|++|++++|.+.+..+..+..+++|++|++++|.+...+....+..+++|++|++++|. +.....  ..+..
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~  172 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAG  172 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTT
T ss_pred             hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--HHccC
Confidence            789999999999999988865555588999999999999999876643467889999999999984 444432  36788


Q ss_pred             cccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCC----------
Q 019237          183 LRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGS----------  252 (344)
Q Consensus       183 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----------  252 (344)
                      +++|++|++++|.+.+..+.   .+..+++|++|++++|.+  ..++..+....++|+.|++++|.+++.          
T Consensus       173 l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCS--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             CCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCcc--ccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence            99999999999998876542   455668999999999998  456666666677899999999988752          


Q ss_pred             ---------------------chHhhhcCCCCCEEEccCCccCCCcccc-ccCCCCCCEEeCCCCcCccccc
Q 019237          253 ---------------------IPEAFQHMVSLKSLHLTDNELEGGIPKF-FGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       253 ---------------------~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                                           +|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|.+++..|
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                                 3556667777888888888777 45544 4677788888888887776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1e-26  Score=223.55  Aligned_cols=139  Identities=22%  Similarity=0.164  Sum_probs=119.9

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ  130 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  130 (344)
                      ..+++.|+++++        .+.+..+..|.++++|++|++++|.++.. .+..|+.+++|++|++++|.+.+..|..|.
T Consensus        31 ~~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  101 (606)
T 3vq2_A           31 PSSTKNIDLSFN--------PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFS  101 (606)
T ss_dssp             CTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred             CCCcCEEECCCC--------CcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcC
Confidence            367999999999        77777777999999999999999999875 577889999999999999999998899999


Q ss_pred             cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCC
Q 019237          131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN  200 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  200 (344)
                      ++++|++|++++|.+...+. ..+..+++|++|++++|.+.... ++..+..+++|++|++++|.+.+..
T Consensus       102 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             TCTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             CcccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecC
Confidence            99999999999999987664 44889999999999999987632 1246888999999999988776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=6e-27  Score=208.65  Aligned_cols=263  Identities=21%  Similarity=0.163  Sum_probs=212.6

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL  132 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l  132 (344)
                      +++.++++++        .++ .+|..+.  ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..+..+
T Consensus        34 ~l~~l~~~~~--------~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  101 (332)
T 2ft3_A           34 HLRVVQCSDL--------GLK-AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPL  101 (332)
T ss_dssp             ETTEEECCSS--------CCS-SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred             cCCEEECCCC--------Ccc-ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence            4678999987        443 4555443  6899999999999874 46688999999999999999998889999999


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCC--CCCchhhccccC
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP--INPSFIWHFNLS  210 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~  210 (344)
                      ++|++|++++|.+...+.  .+  .++|++|++++|.+.....  ..+..+++|++|++++|.+..  ..+   ..+..+
T Consensus       102 ~~L~~L~L~~n~l~~l~~--~~--~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l  172 (332)
T 2ft3_A          102 RKLQKLYISKNHLVEIPP--NL--PSSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEP---GAFDGL  172 (332)
T ss_dssp             TTCCEEECCSSCCCSCCS--SC--CTTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCT---TSSCSC
T ss_pred             CCCCEEECCCCcCCccCc--cc--cccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCc---ccccCC
Confidence            999999999999986653  22  2899999999999987754  457889999999999999864  222   234454


Q ss_pred             CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEE
Q 019237          211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRL  290 (344)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  290 (344)
                       +|++|++++|.+.  .++..+.   ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|
T Consensus       173 -~L~~L~l~~n~l~--~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  246 (332)
T 2ft3_A          173 -KLNYLRISEAKLT--GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL  246 (332)
T ss_dssp             -CCSCCBCCSSBCS--SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEE
T ss_pred             -ccCEEECcCCCCC--ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEE
Confidence             8999999999994  4554433   589999999999998878899999999999999999997777789999999999


Q ss_pred             eCCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          291 FLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       291 ~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      ++++|.++ .+|..+..++.    ++++|++++..+............+.|+.+++.
T Consensus       247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~  302 (332)
T 2ft3_A          247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF  302 (332)
T ss_dssp             ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred             ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence            99999999 78888888776    999999988766444322222335667777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.5e-26  Score=227.97  Aligned_cols=239  Identities=17%  Similarity=0.184  Sum_probs=115.2

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCC-CCC-CCccccccCC-------CCCcEEEccCCcC
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNH-FGG-SPVPEFIGSL-------SRLRYLNLSCGTS  121 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~l~~l-------~~L~~L~Ls~~~~  121 (344)
                      ..+++.|+|++|        .+.+.+|..++++++|++|++++|. +++ . +|..++.+       ++|++|++++|.+
T Consensus       490 L~~L~~L~Ls~N--------~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          490 LKDLTDVELYNC--------PNMTQLPDFLYDLPELQSLNIACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             CTTCCEEEEESC--------TTCCSCCGGGGGCSSCCEEECTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CCCCCEEECcCC--------CCCccChHHHhCCCCCCEEECcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcC
Confidence            356777777777        4555555555555555555555555 443 2 34333322       2555555555544


Q ss_pred             CCcCCc--ccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhccc-CcEEEecCCCCC-
Q 019237          122 LLKVPR--PFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS-LKTLVLRSCALP-  197 (344)
Q Consensus       122 ~~~~~~--~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~-  197 (344)
                      . .+|.  .+.++++|++|++++|.+...+   .+..+++|++|++++|.+...+   ..+..+++ |+.|++++|.+. 
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N~L~~  633 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHNKLKY  633 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSSCCCS
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccch---HHHhhccccCCEEECcCCCCCc
Confidence            4 4444  4555555555555555544222   3344444444444444444222   12334444 444444444433 


Q ss_pred             ------------------------CCCCchhhccc--cCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC
Q 019237          198 ------------------------PINPSFIWHFN--LSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG  251 (344)
Q Consensus       198 ------------------------~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~  251 (344)
                                              +..+.+.....  ...+|+.|++++|.+  ..++..++..+++|+.|++++|.++ 
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L--~~lp~~~~~~l~~L~~L~Ls~N~L~-  710 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI--QKFPTELFATGSPISTIILSNNLMT-  710 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC--CSCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred             CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC--CccCHHHHccCCCCCEEECCCCcCC-
Confidence                                    32221110000  112455555555555  2344444444445666666666555 


Q ss_pred             CchHhhhc--------CCCCCEEEccCCccCCCcccccc--CCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          252 SIPEAFQH--------MVSLKSLHLTDNELEGGIPKFFG--NMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       252 ~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++
T Consensus       711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~  777 (876)
T 4ecn_A          711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ  777 (876)
T ss_dssp             CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred             ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence            33332211        125566666666555 4555554  55666666666666654 4555554444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=2.8e-25  Score=199.04  Aligned_cols=251  Identities=24%  Similarity=0.364  Sum_probs=163.1

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ  130 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  130 (344)
                      .++++.++++++.        +.+ ++. +..+++|++|++++|.++.  + +.+..+++|++|++++|.+....+  +.
T Consensus        65 ~~~L~~L~l~~n~--------i~~-~~~-~~~l~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L~l~~n~i~~~~~--~~  129 (347)
T 4fmz_A           65 LTNLEYLNLNGNQ--------ITD-ISP-LSNLVKLTNLYIGTNKITD--I-SALQNLTNLRELYLNEDNISDISP--LA  129 (347)
T ss_dssp             CTTCCEEECCSSC--------CCC-CGG-GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCSEEECTTSCCCCCGG--GT
T ss_pred             cCCccEEEccCCc--------ccc-chh-hhcCCcCCEEEccCCcccC--c-hHHcCCCcCCEEECcCCcccCchh--hc
Confidence            3568888888873        332 222 5666666666666666554  2 235556666666666555543222  44


Q ss_pred             cCCCCcEEEccCC-----------------------CCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237          131 YLSGLVYLRLENS-----------------------NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK  187 (344)
Q Consensus       131 ~l~~L~~L~ls~~-----------------------~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~  187 (344)
                      .+++|++|++++|                       .+...+.   +..+++|++|++++|.+.....    +..+++|+
T Consensus       130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~  202 (347)
T 4fmz_A          130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP----LASLTSLH  202 (347)
T ss_dssp             TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGG----GGGCTTCC
T ss_pred             cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCccccccc----ccCCCccc
Confidence            5555555555555                       4332221   4444555555555554444321    44555555


Q ss_pred             EEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEE
Q 019237          188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH  267 (344)
Q Consensus       188 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  267 (344)
                      .|++++|.+.+..+     +..+++|++|++++|.+..  +++  ...+++|++|++++|.+++ + ..+..+++|+.|+
T Consensus       203 ~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~  271 (347)
T 4fmz_A          203 YFTAYVNQITDITP-----VANMTRLNSLKIGNNKITD--LSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN  271 (347)
T ss_dssp             EEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCC--CGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred             eeecccCCCCCCch-----hhcCCcCCEEEccCCccCC--Ccc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence            55555555544322     4455788888888888843  333  4555689999999998884 3 4577889999999


Q ss_pred             ccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          268 LTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       268 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      +++|.+++ + ..+..+++|+.|++++|.+++..|..+..+++    ++++|++++..|        ...+++|+.|+++
T Consensus       272 l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~  341 (347)
T 4fmz_A          272 VGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--------LASLSKMDSADFA  341 (347)
T ss_dssp             CCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--------GGGCTTCSEESSS
T ss_pred             ccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--------hhhhhccceeehh
Confidence            99999885 4 34778899999999999999888888888777    899999988766        2368888888876


Q ss_pred             C
Q 019237          344 Y  344 (344)
Q Consensus       344 ~  344 (344)
                      +
T Consensus       342 ~  342 (347)
T 4fmz_A          342 N  342 (347)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=8e-26  Score=213.46  Aligned_cols=109  Identities=22%  Similarity=0.221  Sum_probs=69.7

Q ss_pred             ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC--CchHhhhcCCCCCEEEccCCccCCCcccc-ccCC
Q 019237          208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG--SIPEAFQHMVSLKSLHLTDNELEGGIPKF-FGNM  284 (344)
Q Consensus       208 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l  284 (344)
                      ..+++|++|++++|.+.+ ..+.. ...+++|+.|++++|.+++  .+|..+..+++|++|++++|.+.+.+|.. +..+
T Consensus       321 ~~l~~L~~L~Ls~n~l~~-~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTD-TVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT  398 (520)
T ss_dssp             SSCCCCCEEECCSSCCCT-TTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred             hhCCcccEEEeECCccCh-hhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence            345677777777777743 23333 3445578888888887775  45566777788888888888877645543 5666


Q ss_pred             CCCCEEeCCCCcCccccchHHh-hccC-cccccccc
Q 019237          285 CSLNRLFLPHNKLSGELSEMIQ-NLSG-GCTMNSLE  318 (344)
Q Consensus       285 ~~L~~L~L~~n~l~~~~~~~~~-~l~~-~l~~n~l~  318 (344)
                      ++|+.|++++|.+++.+|..+. .+.. ++++|+++
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK  434 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC
T ss_pred             ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc
Confidence            6777777777766655554442 3333 56666655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=6.1e-26  Score=210.57  Aligned_cols=239  Identities=24%  Similarity=0.277  Sum_probs=199.3

Q ss_pred             ccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCc
Q 019237           42 WRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLR  112 (344)
Q Consensus        42 ~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  112 (344)
                      |..+.|...         ..+++.|+|++|        .+.+..+..|.++++|++|++++|.+... .+..+..+++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMEN--------NIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCC--------cCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCC
Confidence            456777532         257899999998        77777788899999999999999999875 567888999999


Q ss_pred             EEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEec
Q 019237          113 YLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLR  192 (344)
Q Consensus       113 ~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~  192 (344)
                      +|++++|.+....+..+..+++|++|++++|.+...+. ..+..+++|++|++++|....... ...+..+++|+.|+++
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECT
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECC
Confidence            99999999887777778999999999999999986553 568889999999999854433321 1357789999999999


Q ss_pred             CCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237          193 SCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE  272 (344)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  272 (344)
                      +|.+.+.+.     +..+++|+.|++++|.+.  .+.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus       205 ~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          205 MCNIKDMPN-----LTPLVGLEELEMSGNHFP--EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             TSCCSSCCC-----CTTCTTCCEEECTTSCCS--EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCccccccc-----ccccccccEEECcCCcCc--ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence            999987643     556689999999999994  4556666677799999999999998888899999999999999999


Q ss_pred             cCCCccccccCCCCCCEEeCCCCcCc
Q 019237          273 LEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       273 ~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      +++..+..+..+++|+.|+|++|.+.
T Consensus       278 l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          278 LSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCccChHHhccccCCCEEEccCCCcC
Confidence            99766677888999999999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=5.9e-26  Score=201.72  Aligned_cols=215  Identities=20%  Similarity=0.210  Sum_probs=186.9

Q ss_pred             cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      ....++.|++++|.++.  +|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+...+  ..+..+++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP--ASIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC--GGGGGCTTCC
T ss_pred             cccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc--HHHhcCcCCC
Confidence            35789999999999985  8888889999999999999888 88999999999999999999999554  6789999999


Q ss_pred             EEEccccccCCCCchHHH---------HhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchh
Q 019237          162 HLDLSYINLTKSSDWFQV---------VAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL  232 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  232 (344)
                      +|++++|......+  ..         +..+++|++|++++|.+...+.    .+..+++|++|++++|.+.  .+++. 
T Consensus       154 ~L~L~~n~~~~~~p--~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l~--~l~~~-  224 (328)
T 4fcg_A          154 ELSIRACPELTELP--EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLS--ALGPA-  224 (328)
T ss_dssp             EEEEEEETTCCCCC--SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCCC--CCCGG-
T ss_pred             EEECCCCCCccccC--hhHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCCC--cCchh-
Confidence            99999987665532  12         3348999999999999985543    3566789999999999994  45555 


Q ss_pred             hhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          233 FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       233 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      ...+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..++.
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            455669999999999999899999999999999999999999899999999999999999999999999999999876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=9.5e-26  Score=215.20  Aligned_cols=103  Identities=23%  Similarity=0.311  Sum_probs=69.1

Q ss_pred             ccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccC-CCccccccCCCCCCEEeCCCCcCccccchHHhhccC---
Q 019237          235 LSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELE-GGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG---  310 (344)
Q Consensus       235 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---  310 (344)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++   
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence            3345666666666665555666666777777777777765 356667777777777777777777666766666555   


Q ss_pred             -cccccccccccccccccccccccCCCCcceEec
Q 019237          311 -GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       311 -~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                       ++++|++++..|..      ...+++|+.+++.
T Consensus       499 L~l~~n~l~~~~~~~------~~~l~~L~~L~l~  526 (570)
T 2z63_A          499 LNMASNQLKSVPDGI------FDRLTSLQKIWLH  526 (570)
T ss_dssp             EECCSSCCSCCCTTT------TTTCTTCCEEECC
T ss_pred             EeCCCCcCCCCCHHH------hhcccCCcEEEec
Confidence             77777777765533      2367777777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=208.15  Aligned_cols=239  Identities=26%  Similarity=0.297  Sum_probs=197.8

Q ss_pred             ccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCc
Q 019237           42 WRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLR  112 (344)
Q Consensus        42 ~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  112 (344)
                      |..+.|...         ...++.|+|+++        .+.+..+..|.++++|++|++++|.+... .+..|..+++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHEN--------QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSC--------CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCC--------cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCC
Confidence            456777532         256888999998        67777778899999999999999999875 557788999999


Q ss_pred             EEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEec
Q 019237          113 YLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLR  192 (344)
Q Consensus       113 ~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~  192 (344)
                      +|++++|.+....+..|..+++|++|++++|.+...+. ..+..+++|++|++++|....... ...+..+++|++|+++
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~  193 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLA  193 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECT
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH-HHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCC
Confidence            99999998887777788999999999999999986654 567889999999999865433321 1357889999999999


Q ss_pred             CCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237          193 SCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE  272 (344)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  272 (344)
                      +|.+...+.     +..+++|+.|++++|.+.  .+.+..+..+++|++|++++|.+++..+..|..+++|+.|+|++|+
T Consensus       194 ~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          194 MCNLREIPN-----LTPLIKLDELDLSGNHLS--AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             TSCCSSCCC-----CTTCSSCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             CCcCccccc-----cCCCcccCEEECCCCccC--ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence            999887653     556689999999999983  4555566677799999999999998888889999999999999999


Q ss_pred             cCCCccccccCCCCCCEEeCCCCcCc
Q 019237          273 LEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       273 ~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      +++..+..+..+++|+.|+|++|.+.
T Consensus       267 l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          267 LTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCccChhHhccccCCCEEEcCCCCcc
Confidence            99766777888999999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=8.9e-26  Score=205.53  Aligned_cols=248  Identities=21%  Similarity=0.174  Sum_probs=174.4

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      +++++|+++++        .+.+..+..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+....+..+..
T Consensus        69 ~~L~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~  139 (390)
T 3o6n_A           69 RQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN  139 (390)
T ss_dssp             CCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCcEEECCCC--------cccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence            57888999888        55555556777777788888877777764 4556677777777777777666444444567


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHh------------------------------
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVA------------------------------  181 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~------------------------------  181 (344)
                      +++|++|++++|.+...+. ..+..+++|++|++++|.+.....  ..+.                              
T Consensus       140 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~  216 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS  216 (390)
T ss_dssp             CTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCG--GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC
T ss_pred             CCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcccc--ccccccceeecccccccccCCCCcceEEECCCCe
Confidence            7777777777777765432 446667777777777776654321  0111                              


Q ss_pred             -------hcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCch
Q 019237          182 -------KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP  254 (344)
Q Consensus       182 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  254 (344)
                             ..++|+.|++++|.+.+.     ..+..+++|++|++++|.+.  .+.+..+..+++|++|++++|.++ .++
T Consensus       217 l~~~~~~~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~-~~~  288 (390)
T 3o6n_A          217 INVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLV-ALN  288 (390)
T ss_dssp             CCEEECCCCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCC--EEESGGGTTCSSCCEEECCSSCCC-EEE
T ss_pred             eeeccccccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCcCC--CcChhHccccccCCEEECCCCcCc-ccC
Confidence                   112455555555555543     23556689999999999884  444555566678999999999998 466


Q ss_pred             HhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-cccccccccc
Q 019237          255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLEGV  320 (344)
Q Consensus       255 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~~  320 (344)
                      ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++.....+..+.. ++++|++.+.
T Consensus       289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence            66677899999999999988 67777888899999999999998654444444444 8999988764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=3.2e-25  Score=211.28  Aligned_cols=109  Identities=22%  Similarity=0.212  Sum_probs=89.1

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ++++.|++++|        .+.+..|..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|..  .
T Consensus        52 ~~L~~L~Ls~N--------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQN--------SISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--P  119 (562)
T ss_dssp             TTCCEEECCSS--------CCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred             CCcCEEECCCC--------CccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence            67899999998        67776777889999999999999988875 5677888999999999988876 55555  7


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK  172 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~  172 (344)
                      +++|++|++++|.+...+.+..+..+++|++|++++|.+..
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             cccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            88899999999988876655678888888888888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.1e-24  Score=193.34  Aligned_cols=253  Identities=18%  Similarity=0.253  Sum_probs=170.9

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ  130 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  130 (344)
                      ...++.++++++.        +.. ++ .+..+++|++|++++|.++.  ++. +..+++|++|++++|.+...  ..+.
T Consensus        43 l~~L~~L~l~~~~--------i~~-~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~--~~~~  107 (347)
T 4fmz_A           43 LESITKLVVAGEK--------VAS-IQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI--SALQ  107 (347)
T ss_dssp             HTTCSEEECCSSC--------CCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred             cccccEEEEeCCc--------ccc-ch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--hHHc
Confidence            4679999999984        432 33 38889999999999999987  444 88999999999999987653  4688


Q ss_pred             cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccC
Q 019237          131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLS  210 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  210 (344)
                      .+++|++|++++|.+...+.   +..+++|++|++++|.......   .+..+++|++|++++|.+.....     +..+
T Consensus       108 ~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~-----~~~l  176 (347)
T 4fmz_A          108 NLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTP-----IANL  176 (347)
T ss_dssp             TCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGC
T ss_pred             CCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchh-----hccC
Confidence            99999999999999986543   6777888888888875444332   35566666666666665554332     2333


Q ss_pred             CcccEEEcCCCCCCC--------------------CCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccC
Q 019237          211 TSIETLDLSDNNLPS--------------------SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTD  270 (344)
Q Consensus       211 ~~L~~L~l~~n~l~~--------------------~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~  270 (344)
                      ++|++|++++|.+..                    ..+.+  ...+++|++|++++|.+++..+  +..+++|++|++++
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT  252 (347)
T ss_dssp             TTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCC
Confidence            445555555554421                    11111  3344567777777777764333  66777777777777


Q ss_pred             CccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          271 NELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       271 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      |.+++ + ..+..+++|+.|++++|.+++.  ..+..+++    ++++|++++..+....      .+++|+.|+++
T Consensus       253 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~------~l~~L~~L~L~  319 (347)
T 4fmz_A          253 NQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG------GLTNLTTLFLS  319 (347)
T ss_dssp             SCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH------TCTTCSEEECC
T ss_pred             CccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh------ccccCCEEEcc
Confidence            77764 3 3466777788888888777754  23444444    7788877766654333      67788888775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=1.6e-25  Score=215.95  Aligned_cols=101  Identities=22%  Similarity=0.304  Sum_probs=74.7

Q ss_pred             CCccEEEccCCcCc-CCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----c
Q 019237          237 RNILVLDLAFNSLR-GSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----G  311 (344)
Q Consensus       237 ~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~  311 (344)
                      +.++.|++++|.+. +..|..+..+++|++|++++|++++..|..|.++++|+.|+|++|.+++..|..+..+++    +
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence            45666666666533 235667777888888888888888777778888888888888888888777777777666    8


Q ss_pred             ccccccccccccccccccccccC-CCCcceEec
Q 019237          312 CTMNSLEGVLEIIKSHRAGRKSM-RPLDWIAIA  343 (344)
Q Consensus       312 l~~n~l~~~~~~~~~~~~~~~~l-~~L~~l~l~  343 (344)
                      +++|+|++..|....      .+ ++|+.|+|+
T Consensus       549 Ls~N~l~~~~~~~l~------~l~~~L~~L~L~  575 (635)
T 4g8a_A          549 YSLNHIMTSKKQELQ------HFPSSLAFLNLT  575 (635)
T ss_dssp             CTTSCCCBCCSSCTT------CCCTTCCEEECT
T ss_pred             CCCCcCCCCCHHHHH------hhhCcCCEEEee
Confidence            888888887775433      44 467888775

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.4e-25  Score=194.02  Aligned_cols=250  Identities=20%  Similarity=0.141  Sum_probs=200.0

Q ss_pred             EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCC
Q 019237           55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG  134 (344)
Q Consensus        55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~  134 (344)
                      +.++.++.        .++ .+|..+  .++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..+++
T Consensus        14 ~~~~c~~~--------~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   81 (285)
T 1ozn_A           14 VTTSCPQQ--------GLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLAL   81 (285)
T ss_dssp             CEEECCSS--------CCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             eEEEcCcC--------Ccc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence            56677766        343 344433  46899999999999875 4567889999999999999988888889999999


Q ss_pred             CcEEEccCCC-CCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237          135 LVYLRLENSN-LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI  213 (344)
Q Consensus       135 L~~L~ls~~~-l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  213 (344)
                      |++|++++|. +.... +..+..+++|++|++++|.+.....  ..+..+++|++|++++|.+...++.   .+..+++|
T Consensus        82 L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L  155 (285)
T 1ozn_A           82 LEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNL  155 (285)
T ss_dssp             CCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTC
T ss_pred             CCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECH--hHhhCCcCCCEEECCCCcccccCHh---HhccCCCc
Confidence            9999999997 66543 3668889999999999999887743  4678899999999999999877652   35667899


Q ss_pred             cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237          214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP  293 (344)
Q Consensus       214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~  293 (344)
                      ++|++++|.+  ..+++..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus       156 ~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          156 THLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             CEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             cEEECCCCcc--cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            9999999998  34555556667799999999999998889999999999999999999997666778999999999999


Q ss_pred             CCcCccccch--HHhhccC-cccccccccccccc
Q 019237          294 HNKLSGELSE--MIQNLSG-GCTMNSLEGVLEII  324 (344)
Q Consensus       294 ~n~l~~~~~~--~~~~l~~-~l~~n~l~~~~~~~  324 (344)
                      +|.+....+.  .+..+.. ....+.+.+..|..
T Consensus       234 ~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          234 DNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             SSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred             CCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence            9999865432  1222222 56667777766643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=4.2e-25  Score=215.15  Aligned_cols=140  Identities=21%  Similarity=0.158  Sum_probs=105.5

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      .++++|+++++        .+.+..|..+.++++|++|++++|.++.. .+..++.+++|++|++++|.+.+..|..|.+
T Consensus        49 ~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  119 (680)
T 1ziw_A           49 SQLTSLDVGFN--------TISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVK  119 (680)
T ss_dssp             TTCSEEECCSS--------CCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred             CcCcEEECCCC--------ccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccc
Confidence            57899999988        67777788888888899999988888763 3346788888888888888887777778888


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP  201 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  201 (344)
                      +++|++|++++|.+..... ..+..+++|++|++++|.+.......-....+++|++|++++|.+.+..+
T Consensus       120 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          120 QKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             cCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence            8888888888888875432 45677888888888888877664311112345778888888887766544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=211.69  Aligned_cols=128  Identities=23%  Similarity=0.235  Sum_probs=112.5

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      .+++.|+++++        .+.+..|..+.++++|++|++++|.++.. .+..++.+++|++|++++|.+. .+|..  .
T Consensus        21 ~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQN--------YISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--P   88 (520)
T ss_dssp             TTCSEEECCSS--------CCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred             ccccEEECCCC--------cccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence            68999999999        77777778999999999999999999875 5788999999999999999887 46655  7


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC--cEEEecCCCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL--KTLVLRSCAL  196 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~  196 (344)
                      +++|++|++++|.+...+.+..+..+++|++|++++|.+...     .+..+++|  +.|++++|.+
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTT
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccc
Confidence            999999999999999766667899999999999999998762     45677788  9999999988

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.5e-25  Score=215.00  Aligned_cols=245  Identities=21%  Similarity=0.187  Sum_probs=180.0

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      .+++.|+++++        .+.+..|..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+....+..|..
T Consensus        75 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~  145 (597)
T 3oja_B           75 RQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN  145 (597)
T ss_dssp             CCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCC--------CCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence            57889999998        66666666788888888888888888775 5566778888888888888777655555677


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcc---------------------------
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR---------------------------  184 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~---------------------------  184 (344)
                      +++|++|++++|.+...+. ..+..+++|++|++++|.+....     +..++                           
T Consensus       146 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls  219 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS  219 (597)
T ss_dssp             CTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred             CCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence            8888888888888775442 45677788888888888776542     12222                           


Q ss_pred             -------------cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC
Q 019237          185 -------------SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG  251 (344)
Q Consensus       185 -------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~  251 (344)
                                   +|+.|++++|.+.+.     ..+..+++|+.|++++|.+.  .+.+..+..+++|+.|++++|.++ 
T Consensus       220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~-----~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~-  291 (597)
T 3oja_B          220 HNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLV-  291 (597)
T ss_dssp             SSCCCEEECSCCSCCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCC--EEESGGGTTCSSCCEEECTTSCCC-
T ss_pred             CCcccccccccCCCCCEEECCCCCCCCC-----hhhccCCCCCEEECCCCccC--CCCHHHhcCccCCCEEECCCCCCC-
Confidence                         345555555555442     23556688999999999884  344555556678999999999988 


Q ss_pred             CchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-cccccccccc
Q 019237          252 SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLEGV  320 (344)
Q Consensus       252 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~~  320 (344)
                      .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..+..+.. ++++|++.+.
T Consensus       292 ~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence            46666677889999999999988 67777888899999999999988664444444444 8888888764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.6e-25  Score=206.34  Aligned_cols=253  Identities=21%  Similarity=0.178  Sum_probs=205.1

Q ss_pred             ceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC
Q 019237           44 GVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL  123 (344)
Q Consensus        44 ~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~  123 (344)
                      ...|..   ..+.++.++.        .++ .+|..+.  +++++|++++|.++.. .+..|..+++|++|++++|.+.+
T Consensus        49 ~C~C~~---~~~~v~c~~~--------~l~-~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~  113 (452)
T 3zyi_A           49 VCSCSN---QFSKVVCTRR--------GLS-EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQ  113 (452)
T ss_dssp             TSEECS---SSCEEECCSS--------CCS-SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCEECC---CCcEEEECCC--------CcC-ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCC
Confidence            455642   2345677665        343 3554443  5899999999999885 67788999999999999999998


Q ss_pred             cCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch
Q 019237          124 KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF  203 (344)
Q Consensus       124 ~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  203 (344)
                      ..+..|..+++|++|++++|.+...+. ..+..+++|++|++++|.+.....  ..+..+++|+.|++++|......+  
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~--  188 (452)
T 3zyi_A          114 IEVGAFNGLASLNTLELFDNWLTVIPS-GAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLMRLDLGELKKLEYIS--  188 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSBCCT-TTSSSCTTCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTTCCEEC--
T ss_pred             cChhhccCcccCCEEECCCCcCCccCh-hhhcccCCCCEEECCCCCcceeCH--hHHhcCCcccEEeCCCCCCccccC--
Confidence            888999999999999999999986653 557889999999999999886653  467889999999999854433322  


Q ss_pred             hhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccC
Q 019237          204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGN  283 (344)
Q Consensus       204 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~  283 (344)
                      ...+..+++|++|++++|.+.+  + +. ...+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~--~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKD--M-PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSS--C-CC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhccCCCCCCEEECCCCcccc--c-cc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence            2346677999999999999943  3 33 344569999999999999888999999999999999999999877888999


Q ss_pred             CCCCCEEeCCCCcCccccchHHhhccC----cccccccccc
Q 019237          284 MCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGV  320 (344)
Q Consensus       284 l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~  320 (344)
                      +++|+.|+|++|.+++..+..+..+++    ++++|++...
T Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            999999999999999776666666665    8899987543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.5e-25  Score=205.70  Aligned_cols=252  Identities=21%  Similarity=0.190  Sum_probs=205.0

Q ss_pred             ceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC
Q 019237           44 GVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL  123 (344)
Q Consensus        44 ~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~  123 (344)
                      ...|..   ..+.++..+.        .++ .+|..+.  ++++.|++++|.+... .+..|..+++|++|++++|.+..
T Consensus        38 ~C~C~~---~~~~v~c~~~--------~l~-~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~  102 (440)
T 3zyj_A           38 VCSCSN---QFSKVICVRK--------NLR-EVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRT  102 (440)
T ss_dssp             SSEECT---TSCEEECCSC--------CCS-SCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCE
T ss_pred             CCEeCC---CCCEEEeCCC--------CcC-cCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCc
Confidence            345642   2346677665        343 4555443  5899999999999875 56788999999999999999988


Q ss_pred             cCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch
Q 019237          124 KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF  203 (344)
Q Consensus       124 ~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  203 (344)
                      ..+..|.++++|++|++++|.++..+. ..+..+++|++|++++|.+.....  ..+..+++|++|++++|......+  
T Consensus       103 i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~--  177 (440)
T 3zyj_A          103 IEIGAFNGLANLNTLELFDNRLTTIPN-GAFVYLSKLKELWLRNNPIESIPS--YAFNRIPSLRRLDLGELKRLSYIS--  177 (440)
T ss_dssp             ECGGGGTTCSSCCEEECCSSCCSSCCT-TTSCSCSSCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTTCCEEC--
T ss_pred             cChhhccCCccCCEEECCCCcCCeeCH-hHhhccccCceeeCCCCcccccCH--HHhhhCcccCEeCCCCCCCcceeC--
Confidence            888899999999999999999997664 568889999999999999887653  467889999999999855433322  


Q ss_pred             hhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccC
Q 019237          204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGN  283 (344)
Q Consensus       204 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~  283 (344)
                      ...+..+++|++|++++|.+.  .++ . ...+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~--~~~-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLR--EIP-N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCS--SCC-C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             cchhhcccccCeecCCCCcCc--ccc-c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence            234667799999999999994  343 3 345569999999999999888999999999999999999999877888999


Q ss_pred             CCCCCEEeCCCCcCccccchHHhhccC----ccccccccc
Q 019237          284 MCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEG  319 (344)
Q Consensus       284 l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~  319 (344)
                      +++|+.|+|++|.+++..+..+..+++    ++++|++..
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            999999999999999777666666665    888988753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.7e-25  Score=212.07  Aligned_cols=102  Identities=24%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc
Q 019237           71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS  150 (344)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~  150 (344)
                      .+.+..+..|.++++|++|++++|.++.. .+..++.+++|++|++++|.+....+..++.+++|++|++++|.+.....
T Consensus        63 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~l  141 (570)
T 2z63_A           63 EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL  141 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCC
T ss_pred             cCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecC
Confidence            45555555666666777777776666553 34556667777777777666655544456677777777777777765444


Q ss_pred             hhhhhcCCCCCEEEccccccCCC
Q 019237          151 LEWLSHLSSLRHLDLSYINLTKS  173 (344)
Q Consensus       151 ~~~l~~~~~L~~L~l~~~~~~~~  173 (344)
                      +..+..+++|++|++++|.+...
T Consensus       142 p~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          142 PEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CGGGGGCTTCCEEECTTSCCCEE
T ss_pred             hhhhcccCCCCEEeCcCCcccee
Confidence            46677777788888777776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=4.6e-25  Score=209.63  Aligned_cols=85  Identities=34%  Similarity=0.481  Sum_probs=45.2

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC-cCCccc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL-KVPRPF  129 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-~~~~~~  129 (344)
                      ..++++|++++|        .+.+..|..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+.+ ..|..+
T Consensus        49 l~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           49 CANLQVLILKSS--------RINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             CTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             CCcccEEECCCC--------CcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhh
Confidence            356777777777        44444445555555555555555555543 33335555555555555555443 233444


Q ss_pred             ccCCCCcEEEccCCC
Q 019237          130 QYLSGLVYLRLENSN  144 (344)
Q Consensus       130 ~~l~~L~~L~ls~~~  144 (344)
                      .++++|++|++++|.
T Consensus       120 ~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          120 PNLTNLQTLRIGNVE  134 (549)
T ss_dssp             TTCTTCCEEEEEESS
T ss_pred             hccCCccEEECCCCc
Confidence            445555555555444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=8e-26  Score=199.05  Aligned_cols=249  Identities=23%  Similarity=0.272  Sum_probs=201.4

Q ss_pred             EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCc--CCcccccC
Q 019237           55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK--VPRPFQYL  132 (344)
Q Consensus        55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~l  132 (344)
                      +.++.++.        .++ .+|..+.  ++|++|++++|.++.. .+..+..+++|++|++++|.+...  .+..+..+
T Consensus        10 ~~l~c~~~--------~l~-~ip~~~~--~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~   77 (306)
T 2z66_A           10 TEIRCNSK--------GLT-SVPTGIP--SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT   77 (306)
T ss_dssp             TEEECCSS--------CCS-SCCSCCC--TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred             CEEEcCCC--------Ccc-cCCCCCC--CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccc
Confidence            36777776        343 3444332  5899999999999863 334578999999999999987633  35667789


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCc
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS  212 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  212 (344)
                      ++|++|++++|.+...+  ..+..+++|++|++++|.+..... ...+..+++|++|++++|.+....+.   .+..+++
T Consensus        78 ~~L~~L~Ls~n~i~~l~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~  151 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSS  151 (306)
T ss_dssp             SCCCEEECCSCSEEEEE--EEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTT
T ss_pred             cccCEEECCCCccccCh--hhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchh---hcccCcC
Confidence            99999999999988654  457889999999999999887643 13578899999999999998766542   3566699


Q ss_pred             ccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeC
Q 019237          213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL  292 (344)
Q Consensus       213 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L  292 (344)
                      |++|++++|.+.+ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus       152 L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          152 LEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             CCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             CCEEECCCCcccc-ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence            9999999998843 234445566679999999999999777899999999999999999999766667889999999999


Q ss_pred             CCCcCccccchHHhhcc-C----cccccccccccc
Q 019237          293 PHNKLSGELSEMIQNLS-G----GCTMNSLEGVLE  322 (344)
Q Consensus       293 ~~n~l~~~~~~~~~~l~-~----~l~~n~l~~~~~  322 (344)
                      ++|.+++..|..+..++ .    ++++|++.+.-+
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            99999998888887764 3    899999987643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=4.7e-24  Score=198.62  Aligned_cols=217  Identities=25%  Similarity=0.383  Sum_probs=110.0

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ  130 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  130 (344)
                      ..++++|+++++        .+.+. ++ +.++++|++|++++|.+..  +++ ++.+++|++|++++|.+....+  +.
T Consensus        67 l~~L~~L~Ls~n--------~l~~~-~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~  131 (466)
T 1o6v_A           67 LNNLTQINFSNN--------QLTDI-TP-LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDIDP--LK  131 (466)
T ss_dssp             CTTCCEEECCSS--------CCCCC-GG-GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred             hcCCCEEECCCC--------ccCCc-hh-hhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCChH--Hc
Confidence            357888888887        44433 22 6667777777777776665  333 6667777777777665554322  55


Q ss_pred             cCCCCcEEEccCCCCCCCCch------------------hhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEec
Q 019237          131 YLSGLVYLRLENSNLFSLGSL------------------EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLR  192 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~  192 (344)
                      .+++|++|++++|.+...+..                  ..+..+++|++|++++|.+....    .+..+++|++|+++
T Consensus       132 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~  207 (466)
T 1o6v_A          132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----VLAKLTNLESLIAT  207 (466)
T ss_dssp             TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECC
T ss_pred             CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh----hhccCCCCCEEEec
Confidence            666666666666655443210                  11334455555555555554432    24455555555555


Q ss_pred             CCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237          193 SCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE  272 (344)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  272 (344)
                      +|.+.+..+     +..+++|+.|++++|.+.+  + +. ...+++|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       208 ~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~--~-~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  276 (466)
T 1o6v_A          208 NNQISDITP-----LGILTNLDELSLNGNQLKD--I-GT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ  276 (466)
T ss_dssp             SSCCCCCGG-----GGGCTTCCEEECCSSCCCC--C-GG-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred             CCccccccc-----ccccCCCCEEECCCCCccc--c-hh-hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc
Confidence            555544322     2223445555555554422  1 11 2223345555555555443322  4444444444444444


Q ss_pred             cCCCccccccCCCCCCEEeCCCCcCcc
Q 019237          273 LEGGIPKFFGNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       273 ~~~~~~~~l~~l~~L~~L~L~~n~l~~  299 (344)
                      +++. +. +..+++|+.|++++|.+++
T Consensus       277 l~~~-~~-~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          277 ISNI-SP-LAGLTALTNLELNENQLED  301 (466)
T ss_dssp             CCCC-GG-GTTCTTCSEEECCSSCCSC
T ss_pred             cCcc-cc-ccCCCccCeEEcCCCcccC
Confidence            4422 21 3444444444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.2e-26  Score=204.87  Aligned_cols=269  Identities=20%  Similarity=0.191  Sum_probs=179.9

Q ss_pred             CCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237           27 LSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG  106 (344)
Q Consensus        27 ~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  106 (344)
                      .+.|.   ....|+.+..+........++.++++++        .+  .+|..+...  |+.|++++|.+....++..+.
T Consensus        21 ~~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~n--------~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~   85 (312)
T 1wwl_A           21 KPDWS---SAFNCLGAADVELYGGGRSLEYLLKRVD--------TE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRIL   85 (312)
T ss_dssp             SCCGG---GGGGSSSCSEEEEEEEEEECTTHHHHCC--------TT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHH
T ss_pred             ccchH---HHhhhhccccEEEEccCCCceeEeeccc--------cc--ccHHHHHHH--HhhcccccccccCCCcCHHHH
Confidence            45665   3344444544433223345666777776        44  556655554  777788888774433555554


Q ss_pred             -------CCCCCcEEEccCCcCCCcCCccc--ccCCCCcEEEccCCCCCCCCchhhhhcC-----CCCCEEEccccccCC
Q 019237          107 -------SLSRLRYLNLSCGTSLLKVPRPF--QYLSGLVYLRLENSNLFSLGSLEWLSHL-----SSLRHLDLSYINLTK  172 (344)
Q Consensus       107 -------~l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~ls~~~l~~~~~~~~l~~~-----~~L~~L~l~~~~~~~  172 (344)
                             .+++|++|++++|.+.+.+|..+  ..+++|++|++++|.+...+  ..+..+     ++|++|++++|.+..
T Consensus        86 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~  163 (312)
T 1wwl_A           86 FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD--AWLAELQQWLKPGLKVLSIAQAHSLN  163 (312)
T ss_dssp             HHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS--SHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred             HHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh--HHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence                   67888888888888887777766  77888888888888887663  445554     788888888888877


Q ss_pred             CCchHHHHhhcccCcEEEecCCCCCCCCCchhh-ccccCCcccEEEcCCCCCCCC-CCcchhhhccCCccEEEccCCcCc
Q 019237          173 SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIW-HFNLSTSIETLDLSDNNLPSS-SVYPWLFNLSRNILVLDLAFNSLR  250 (344)
Q Consensus       173 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~ls~n~l~  250 (344)
                      ...  ..+..+++|++|++++|.+.+..+.... .+..+++|++|++++|.+... .++..++..+++|++|++++|.++
T Consensus       164 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  241 (312)
T 1wwl_A          164 FSC--EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR  241 (312)
T ss_dssp             CCT--TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred             chH--HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            653  3567788888888888876542110001 125567888888888887320 122233345568888888888888


Q ss_pred             CCch-HhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccc
Q 019237          251 GSIP-EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEG  319 (344)
Q Consensus       251 ~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~  319 (344)
                      +..| ..+..+++|++|++++|+++ .+|..+.  ++|+.|++++|.+++. |. +..+++    ++++|++++
T Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          242 DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6553 44556778888888888887 6777665  7888888888888865 54 555555    788888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=9.9e-25  Score=207.92  Aligned_cols=127  Identities=24%  Similarity=0.266  Sum_probs=108.9

Q ss_pred             EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCC
Q 019237           55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG  134 (344)
Q Consensus        55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~  134 (344)
                      +.++++++        .+++ +|..+.  ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..|..+++
T Consensus        34 ~~l~ls~~--------~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           34 SMVDYSNR--------NLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             CEEECTTS--------CCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             cEEEcCCC--------CCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            78999998        5654 666554  7999999999999885 5678999999999999999999888999999999


Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237          135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP  198 (344)
Q Consensus       135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  198 (344)
                      |++|++++|.++..+.  .  .+++|++|++++|.+..... +..+..+++|++|++++|.+..
T Consensus       102 L~~L~Ls~N~l~~lp~--~--~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          102 LEYLDVSHNRLQNISC--C--PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CCEEECTTSCCCEECS--C--CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCEEECCCCcCCccCc--c--ccccCCEEECCCCCccccCc-hHhhcccCcccEEecCCCcccc
Confidence            9999999999996664  2  79999999999999887531 2478889999999999998765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=6.6e-24  Score=196.68  Aligned_cols=214  Identities=19%  Similarity=0.175  Sum_probs=140.2

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      .+++.++++++        .+.+ +| .+..+++|++|++++|.+++.  +  ++.+++|++|++++|.+.+. +  +..
T Consensus        42 ~~L~~L~Ls~n--------~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~--~~~  104 (457)
T 3bz5_A           42 ATLTSLDCHNS--------SITD-MT-GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D--VTP  104 (457)
T ss_dssp             TTCCEEECCSS--------CCCC-CT-TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred             CCCCEEEccCC--------Cccc-Ch-hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence            56888888887        4554 34 577888888888888887763  2  67788888888888777664 2  677


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++|++|++++|.+...+    +..+++|++|++++|.+....     +..+++|++|++++|...+..+     +..++
T Consensus       105 l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~-----~~~l~  170 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKKITKLD-----VTPQT  170 (457)
T ss_dssp             CTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTCSCCCCCC-----CTTCT
T ss_pred             CCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCCCcccccc-----cccCC
Confidence            788888888888877643    567778888888888776642     4566777777777774333221     33446


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      +|++|++++|.+.+  ++   ...+++|+.|++++|.+++.   .+..+++|+.|++++|++++ +|  +..+++|+.|+
T Consensus       171 ~L~~L~ls~n~l~~--l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          171 QLTTLDCSFNKITE--LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             TCCEEECCSSCCCC--CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             cCCEEECCCCccce--ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence            67777777776633  22   23344666666666666643   25556666666666666664 44  55666666666


Q ss_pred             CCCCcCccccchHHhh
Q 019237          292 LPHNKLSGELSEMIQN  307 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~  307 (344)
                      +++|.+++..+..+..
T Consensus       240 l~~N~l~~~~~~~l~~  255 (457)
T 3bz5_A          240 CSVNPLTELDVSTLSK  255 (457)
T ss_dssp             CCSSCCSCCCCTTCTT
T ss_pred             eeCCcCCCcCHHHCCC
Confidence            6666666544443333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.2e-24  Score=185.41  Aligned_cols=218  Identities=25%  Similarity=0.291  Sum_probs=143.7

Q ss_pred             CCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEc
Q 019237           37 RDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNL  116 (344)
Q Consensus        37 ~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L  116 (344)
                      .+.|.|.++.|.. .+..+.++++++        .++ .+|..+.  +++++|++++|.++.. .+..+..+++|++|++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~--------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l   68 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSK--------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYL   68 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTS--------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEEC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCC--------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEEC
Confidence            4789999988842 345678888887        444 3454333  5788999999888774 4456788888888888


Q ss_pred             cCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCC
Q 019237          117 SCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL  196 (344)
Q Consensus       117 s~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  196 (344)
                      ++|.+....+..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+.....  ..                 
T Consensus        69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~-----------------  128 (270)
T 2o6q_A           69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLPP--RV-----------------  128 (270)
T ss_dssp             CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCT--TT-----------------
T ss_pred             CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeCH--HH-----------------
Confidence            8887776555556777888888888887775543 344555666666666655544322  12                 


Q ss_pred             CCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCC
Q 019237          197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG  276 (344)
Q Consensus       197 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  276 (344)
                                +..+++|++|++++|.+  ..+++..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus       129 ----------~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          129 ----------FDSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             ----------TTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ----------hCcCcCCCEEECCCCcC--CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence                      33345566666666655  233444344455677777777777655555666777777777777777754


Q ss_pred             ccccccCCCCCCEEeCCCCcCcc
Q 019237          277 IPKFFGNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       277 ~~~~l~~l~~L~~L~L~~n~l~~  299 (344)
                      .+..+..+++|+.|+|++|.+..
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CHHHhccccCCCEEEecCCCeeC
Confidence            45556777778888887777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1.3e-23  Score=195.64  Aligned_cols=255  Identities=20%  Similarity=0.280  Sum_probs=146.0

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCC----
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVP----  126 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~----  126 (344)
                      ..+++.|+++++        .+.+..+  +.++++|++|++++|.++.  ++. +..+++|++|++++|.+.....    
T Consensus        89 l~~L~~L~l~~n--------~l~~~~~--~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l  155 (466)
T 1o6v_A           89 LTKLVDILMNNN--------QIADITP--LANLTNLTGLTLFNNQITD--IDP-LKNLTNLNRLELSSNTISDISALSGL  155 (466)
T ss_dssp             CTTCCEEECCSS--------CCCCCGG--GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECCCGGGTTC
T ss_pred             cccCCEEECCCC--------ccccChh--hcCCCCCCEEECCCCCCCC--ChH-HcCCCCCCEEECCCCccCCChhhccC
Confidence            467899999988        4554333  7788888888888888776  333 6677777777777665543210    


Q ss_pred             ---------------cccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEe
Q 019237          127 ---------------RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVL  191 (344)
Q Consensus       127 ---------------~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l  191 (344)
                                     ..+..+++|++|++++|.+...+   .+..+++|++|++++|.+....+    +..+++|++|++
T Consensus       156 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l  228 (466)
T 1o6v_A          156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP----LGILTNLDELSL  228 (466)
T ss_dssp             TTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEEC
T ss_pred             CcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc----ccccCCCCEEEC
Confidence                           12455677777777777766543   35666777777777776655432    344555666666


Q ss_pred             cCCCCCCCCCch-----------------hhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCch
Q 019237          192 RSCALPPINPSF-----------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP  254 (344)
Q Consensus       192 ~~~~~~~~~~~~-----------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  254 (344)
                      ++|.+.+...-.                 ...+..+++|++|++++|.+.+  +++  ...+++|+.|++++|.+++..+
T Consensus       229 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~L~~n~l~~~~~  304 (466)
T 1o6v_A          229 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISP--LAGLTALTNLELNENQLEDISP  304 (466)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CGG--GTTCTTCSEEECCSSCCSCCGG
T ss_pred             CCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc--ccc--ccCCCccCeEEcCCCcccCchh
Confidence            655554431100                 0002333445555555554421  222  2233455555555555553322


Q ss_pred             HhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccccccccccccc
Q 019237          255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAG  330 (344)
Q Consensus       255 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~  330 (344)
                        +..+++|+.|++++|++++..|  +..+++|+.|++++|.+++.  ..+..+++    ++++|++++..|        
T Consensus       305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--------  370 (466)
T 1o6v_A          305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--------  370 (466)
T ss_dssp             --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--------
T ss_pred             --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--------
Confidence              4555666666666666554333  45556666666666666543  23444444    667777766655        


Q ss_pred             cccCCCCcceEec
Q 019237          331 RKSMRPLDWIAIA  343 (344)
Q Consensus       331 ~~~l~~L~~l~l~  343 (344)
                      ...+++|+.|++.
T Consensus       371 ~~~l~~L~~L~l~  383 (466)
T 1o6v_A          371 LANLTRITQLGLN  383 (466)
T ss_dssp             GTTCTTCCEEECC
T ss_pred             hhcCCCCCEEecc
Confidence            2356777777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=7.2e-25  Score=218.13  Aligned_cols=258  Identities=21%  Similarity=0.202  Sum_probs=195.1

Q ss_pred             ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcC-CcccccCCCCcEEEccCCCCCCCC
Q 019237           71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLRLENSNLFSLG  149 (344)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-~~~~~~l~~L~~L~ls~~~l~~~~  149 (344)
                      .++ .+|.   ..+++++|++++|.++.. .+..+..+++|++|++++|...+.+ |..|.++++|++|++++|.+....
T Consensus        15 ~L~-~vP~---lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           15 NLT-QVPQ---VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CSS-CCCS---SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCC-CCCC---CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            444 3454   446899999999999876 6788999999999999999777666 788999999999999999998653


Q ss_pred             chhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCc
Q 019237          150 SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVY  229 (344)
Q Consensus       150 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  229 (344)
                       +..+..+++|++|++++|.+.........+..+++|++|++++|.+.+..+  ...+..+++|++|++++|.+.+ ..+
T Consensus        90 -p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~~L~Ls~N~i~~-~~~  165 (844)
T 3j0a_A           90 -PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--HPSFGKLNSLKSIDFSSNQIFL-VCE  165 (844)
T ss_dssp             -TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--CGGGGTCSSCCEEEEESSCCCC-CCS
T ss_pred             -HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--chhHhhCCCCCEEECCCCcCCe-eCH
Confidence             367889999999999999988643211237889999999999999987654  2346777999999999998854 222


Q ss_pred             chhhhc-cC------------------------------CccEEEccCCcCcCCchHhhhc-------------------
Q 019237          230 PWLFNL-SR------------------------------NILVLDLAFNSLRGSIPEAFQH-------------------  259 (344)
Q Consensus       230 ~~~~~~-~~------------------------------~L~~L~ls~n~l~~~~~~~~~~-------------------  259 (344)
                      ..+... .+                              .|+.|++++|.+++..+..+..                   
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~  245 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA  245 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred             HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence            222111 01                              2677777777665433332221                   


Q ss_pred             -------------------CCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccc
Q 019237          260 -------------------MVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNS  316 (344)
Q Consensus       260 -------------------~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~  316 (344)
                                         .++|+.|++++|.+.+..+..+..+++|+.|+|++|.+++..|..+.++++    ++++|.
T Consensus       246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence                               257888888888888766777888889999999999988777777777766    888888


Q ss_pred             cccccccccccccccccCCCCcceEec
Q 019237          317 LEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       317 l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      +++..|...      ..+++|+.|+++
T Consensus       326 l~~~~~~~~------~~l~~L~~L~L~  346 (844)
T 3j0a_A          326 LGELYSSNF------YGLPKVAYIDLQ  346 (844)
T ss_dssp             CSCCCSCSC------SSCTTCCEEECC
T ss_pred             CCccCHHHh------cCCCCCCEEECC
Confidence            887766443      377888888875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=1.2e-24  Score=189.67  Aligned_cols=240  Identities=21%  Similarity=0.196  Sum_probs=194.2

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCc-CCCcCCccc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGT-SLLKVPRPF  129 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~~~~~  129 (344)
                      ...++.|+++++        .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|. +....+..+
T Consensus        31 ~~~l~~L~l~~n--------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~  101 (285)
T 1ozn_A           31 PAASQRIFLHGN--------RISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (285)
T ss_dssp             CTTCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             CCCceEEEeeCC--------cCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence            357999999998        67766677899999999999999999875 57788999999999999997 665668889


Q ss_pred             ccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcccc
Q 019237          130 QYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL  209 (344)
Q Consensus       130 ~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  209 (344)
                      ..+++|++|++++|.+..... ..+..+++|++|++++|.+.....  ..+..+++|++|++++|.+...+..   .+..
T Consensus       102 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~  175 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPER---AFRG  175 (285)
T ss_dssp             TTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCEECTT---TTTT
T ss_pred             cCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCCCcccccCHH---HhcC
Confidence            999999999999999986543 668889999999999999987754  3578899999999999998876542   3566


Q ss_pred             CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCE
Q 019237          210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNR  289 (344)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  289 (344)
                      +++|++|++++|.+.  .+.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. .-...++.
T Consensus       176 l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~  252 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK  252 (285)
T ss_dssp             CTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred             ccccCEEECCCCccc--ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence            799999999999994  343445556679999999999999877888999999999999999988644321 01123445


Q ss_pred             EeCCCCcCccccchHHhhc
Q 019237          290 LFLPHNKLSGELSEMIQNL  308 (344)
Q Consensus       290 L~L~~n~l~~~~~~~~~~l  308 (344)
                      +..+.+.+....|..+.+.
T Consensus       253 ~~~~~~~~~c~~p~~l~g~  271 (285)
T 1ozn_A          253 FRGSSSEVPCSLPQRLAGR  271 (285)
T ss_dssp             CCSEECCCBEEESGGGTTC
T ss_pred             cccccCccccCCchHhCCc
Confidence            5566777777777766553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=5.8e-26  Score=200.94  Aligned_cols=241  Identities=22%  Similarity=0.186  Sum_probs=189.3

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ++++.|+++++        .+.+..|..+..+++|++|++++|.++.  .++ +..+++|++|++++|.+.+.     ..
T Consensus        34 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~Ls~n~l~~l-----~~   97 (317)
T 3o53_A           34 WNVKELDLSGN--------PLSQISAADLAPFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNNYVQEL-----LV   97 (317)
T ss_dssp             GGCSEEECTTS--------CCCCCCHHHHTTCTTCCEEECTTSCCEE--EEE-ETTCTTCCEEECCSSEEEEE-----EE
T ss_pred             CCCCEEECcCC--------ccCcCCHHHhhCCCcCCEEECCCCcCCc--chh-hhhcCCCCEEECcCCccccc-----cC
Confidence            57889999998        6777777889999999999999999876  333 78899999999998876643     23


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      .++|++|++++|.+...+.    ..+++|++|++++|.+.....  ..+..+++|++|++++|.+.+..+.  .....++
T Consensus        98 ~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~  169 (317)
T 3o53_A           98 GPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFA--ELAASSD  169 (317)
T ss_dssp             CTTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTTSCCCEEEGG--GGGGGTT
T ss_pred             CCCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCCCCCCcccHH--HHhhccC
Confidence            4899999999998886542    347889999999999887643  3567789999999999998876542  2234568


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      +|++|++++|.+..  ++.. . ..++|++|++++|.++ .++..+..+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       170 ~L~~L~L~~N~l~~--~~~~-~-~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          170 TLEHLNLQYNFIYD--VKGQ-V-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD  243 (317)
T ss_dssp             TCCEEECTTSCCCE--EECC-C-CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred             cCCEEECCCCcCcc--cccc-c-ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence            99999999999843  3322 2 2568999999999999 45555888999999999999998 6888888999999999


Q ss_pred             CCCCcCc-cccchHHhhccC----cccc-cccccccc
Q 019237          292 LPHNKLS-GELSEMIQNLSG----GCTM-NSLEGVLE  322 (344)
Q Consensus       292 L~~n~l~-~~~~~~~~~l~~----~l~~-n~l~~~~~  322 (344)
                      +++|.++ +.+|..+..++.    ++++ +.+.|..|
T Consensus       244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             CTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             ccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            9999998 777777777766    5553 33555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.2e-25  Score=197.22  Aligned_cols=242  Identities=21%  Similarity=0.231  Sum_probs=194.3

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ..++..+++.+        .+...++..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+  +..
T Consensus        10 ~~l~i~~ls~~--------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~   78 (317)
T 3o53_A           10 NRYKIEKVTDS--------SLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LES   78 (317)
T ss_dssp             TEEEEESCCTT--------THHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETT
T ss_pred             CceeEeecccc--------chhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhh
Confidence            45666677666        66655666667788999999999999886 66789999999999999998876554  889


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++|++|++++|.++..+      ..++|++|++++|.+.....     ..+++|++|++++|.+.+..+.   .+..++
T Consensus        79 l~~L~~L~Ls~n~l~~l~------~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~~---~~~~l~  144 (317)
T 3o53_A           79 LSTLRTLDLNNNYVQELL------VGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDL---DEGCRS  144 (317)
T ss_dssp             CTTCCEEECCSSEEEEEE------ECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGGB---CTGGGS
T ss_pred             cCCCCEEECcCCcccccc------CCCCcCEEECCCCccCCcCc-----cccCCCCEEECCCCCCCCccch---hhhccC
Confidence            999999999999887543      45899999999999887643     3478899999999999886542   345568


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      +|++|++++|.+.+ ..+..+...+++|++|++++|.+++. +.. ..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus       145 ~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          145 RVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS  220 (317)
T ss_dssp             SEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred             CCCEEECCCCCCCc-ccHHHHhhccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence            99999999999954 22334444567999999999999844 332 34899999999999999 5666688999999999


Q ss_pred             CCCCcCccccchHHhhccC----cccccccc-ccccc
Q 019237          292 LPHNKLSGELSEMIQNLSG----GCTMNSLE-GVLEI  323 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~l~~----~l~~n~l~-~~~~~  323 (344)
                      +++|.++ .+|..+..+++    ++++|++. +.+|.
T Consensus       221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            9999999 56777766665    89999998 54443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=7.4e-25  Score=196.77  Aligned_cols=246  Identities=22%  Similarity=0.211  Sum_probs=186.8

Q ss_pred             EEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCc
Q 019237           57 LNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLV  136 (344)
Q Consensus        57 l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~  136 (344)
                      .+.+++        .++ .+|..+.  ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.++++|+
T Consensus        36 c~~~~~--------~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           36 CKGSSG--------SLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             EECCST--------TCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             eeCCCC--------Ccc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            677776        444 4565444  4899999999999874 444789999999999999999888888899999999


Q ss_pred             EEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCC-CCCCCCchhhccccCCcccE
Q 019237          137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA-LPPINPSFIWHFNLSTSIET  215 (344)
Q Consensus       137 ~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~  215 (344)
                      +|++++|.++..+. ..+..+++|++|++++|.+...+. ...+..+++|++|++++|. +....+   ..+..+++|++
T Consensus       104 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~  178 (353)
T 2z80_A          104 HLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQR---KDFAGLTFLEE  178 (353)
T ss_dssp             EEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEE
T ss_pred             EEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCH---HHccCCCCCCE
Confidence            99999999996653 558899999999999999886542 1246789999999999984 555433   24566799999


Q ss_pred             EEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCc------------------
Q 019237          216 LDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI------------------  277 (344)
Q Consensus       216 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------------  277 (344)
                      |++++|.+.  .+.+.....+++|++|++++|.++......+..+++|+.|++++|.+++..                  
T Consensus       179 L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L  256 (353)
T 2z80_A          179 LEIDASDLQ--SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF  256 (353)
T ss_dssp             EEEEETTCC--EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred             EECCCCCcC--ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence            999999984  344444556679999999999997433344566899999999999998632                  


Q ss_pred             -------------cccccCCCCCCEEeCCCCcCccccchH-HhhccC----cccccccccccc
Q 019237          278 -------------PKFFGNMCSLNRLFLPHNKLSGELSEM-IQNLSG----GCTMNSLEGVLE  322 (344)
Q Consensus       278 -------------~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~----~l~~n~l~~~~~  322 (344)
                                   |..+..+++|+.|++++|.++ .+|.. +..+++    ++++|++.+..|
T Consensus       257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                         333455667777777777776 44443 344444    677777766655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.7e-25  Score=196.18  Aligned_cols=244  Identities=20%  Similarity=0.152  Sum_probs=177.1

Q ss_pred             hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCC-CcCCcccc-------cCCCCcEEEccCCCCCCCCch
Q 019237           80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSL-LKVPRPFQ-------YLSGLVYLRLENSNLFSLGSL  151 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~-~~~~~~~~-------~l~~L~~L~ls~~~l~~~~~~  151 (344)
                      ++..++|+.+++++|.+ .  +|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|.+..... 
T Consensus        39 ~~~~~~L~~l~l~~n~l-~--~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-  112 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-A--DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP-  112 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-C--CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC-
T ss_pred             EccCCCceeEeeccccc-c--cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH-
Confidence            45667788899999988 3  66655533  888888888773 45565554       68899999999998874322 


Q ss_pred             hhh--hcCCCCCEEEccccccCCCCchHHHHhhc-----ccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCC
Q 019237          152 EWL--SHLSSLRHLDLSYINLTKSSDWFQVVAKL-----RSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLP  224 (344)
Q Consensus       152 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  224 (344)
                      ..+  ..+++|++|++++|.+...+.   .+..+     ++|++|++++|.+.+.++.   .+..+++|++|++++|.+.
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATRDA---WLAELQQWLKPGLKVLSIAQAHSLNFSCE---QVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSSSS---HHHHHHTTCCTTCCEEEEESCSCCCCCTT---TCCCCSSCCEEECCSCTTC
T ss_pred             HHHHHhcCCCccEEEccCCCCcchhH---HHHHHHHhhcCCCcEEEeeCCCCccchHH---HhccCCCCCEEECCCCCcC
Confidence            222  788999999999999888754   34444     8899999999998887642   4566789999999999874


Q ss_pred             CC-CCcchh-hhccCCccEEEccCCcCcC--Cch-HhhhcCCCCCEEEccCCccCCCcc-ccccCCCCCCEEeCCCCcCc
Q 019237          225 SS-SVYPWL-FNLSRNILVLDLAFNSLRG--SIP-EAFQHMVSLKSLHLTDNELEGGIP-KFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       225 ~~-~~~~~~-~~~~~~L~~L~ls~n~l~~--~~~-~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~  298 (344)
                      +. .++..+ ...+++|++|++++|.+++  .++ ..+..+++|+.|++++|++++..| ..+..+++|+.|++++|.++
T Consensus       187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            31 012222 2455689999999999883  222 344677899999999999987664 44566789999999999998


Q ss_pred             cccchHHh-hccC-cccccccccccccccccccccccCCCCcceEecC
Q 019237          299 GELSEMIQ-NLSG-GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY  344 (344)
Q Consensus       299 ~~~~~~~~-~l~~-~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~~  344 (344)
                       .+|..+. .+.. ++++|++++. |.       ...+++|+.|++.+
T Consensus       267 -~ip~~~~~~L~~L~Ls~N~l~~~-p~-------~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          267 -QVPKGLPAKLSVLDLSYNRLDRN-PS-------PDELPQVGNLSLKG  305 (312)
T ss_dssp             -SCCSSCCSEEEEEECCSSCCCSC-CC-------TTTSCEEEEEECTT
T ss_pred             -hhhhhccCCceEEECCCCCCCCC-hh-------HhhCCCCCEEeccC
Confidence             6676555 3333 8999999876 42       34788888888763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=4e-24  Score=199.79  Aligned_cols=229  Identities=22%  Similarity=0.190  Sum_probs=186.8

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ++++.|+|+++        .+.+..|..+..+++|++|++++|.+++.  ++ +..+++|++|++++|.+.+..     .
T Consensus        34 ~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~-----~   97 (487)
T 3oja_A           34 WNVKELDLSGN--------PLSQISAADLAPFTKLELLNLSSNVLYET--LD-LESLSTLRTLDLNNNYVQELL-----V   97 (487)
T ss_dssp             GGCCEEECCSS--------CCCCCCGGGGTTCTTCCEEECTTSCCEEE--EE-CTTCTTCCEEECCSSEEEEEE-----E
T ss_pred             CCccEEEeeCC--------cCCCCCHHHHhCCCCCCEEEeeCCCCCCC--cc-cccCCCCCEEEecCCcCCCCC-----C
Confidence            47999999999        77777788899999999999999999763  33 889999999999999876433     3


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      .++|++|++++|.+...+.    ..+++|++|++++|.+....+  ..+..+++|+.|++++|.+.+..+.  .....++
T Consensus        98 ~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~~l~  169 (487)
T 3oja_A           98 GPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFA--ELAASSD  169 (487)
T ss_dssp             CTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGG--BCGGGGSSEEEEECTTSCCCEEEGG--GGGGGTT
T ss_pred             CCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCc--hhhcCCCCCCEEECCCCCCCCcChH--HHhhhCC
Confidence            4899999999999986653    356899999999999987643  3567899999999999999886542  2233568


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      +|++|++++|.+.+  ++. .. .+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus       170 ~L~~L~Ls~N~l~~--~~~-~~-~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          170 TLEHLNLQYNFIYD--VKG-QV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD  243 (487)
T ss_dssp             TCCEEECTTSCCCE--EEC-CC-CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred             cccEEecCCCcccc--ccc-cc-cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEE
Confidence            99999999999943  332 22 36689999999999995 4445888999999999999999 5888888999999999


Q ss_pred             CCCCcCc-cccchHHhhccC
Q 019237          292 LPHNKLS-GELSEMIQNLSG  310 (344)
Q Consensus       292 L~~n~l~-~~~~~~~~~l~~  310 (344)
                      +++|.+. +.+|..+..++.
T Consensus       244 l~~N~l~c~~~~~~~~~l~~  263 (487)
T 3oja_A          244 LRGNGFHCGTLRDFFSKNQR  263 (487)
T ss_dssp             CTTCCBCHHHHHHHHTTCHH
T ss_pred             cCCCCCcCcchHHHHHhCCC
Confidence            9999998 666776666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=7.5e-25  Score=204.74  Aligned_cols=219  Identities=21%  Similarity=0.235  Sum_probs=179.9

Q ss_pred             cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      .+++|++|++++|.++.. .+..++.+++|++|++++|.+.+..|  +..+++|++|++++|.+...+      ..++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------~~~~L~  102 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------VGPSIE  102 (487)
T ss_dssp             TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE------ECTTCC
T ss_pred             cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC------CCCCcC
Confidence            344899999999999886 67789999999999999999887665  889999999999999887544      348999


Q ss_pred             EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237          162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV  241 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  241 (344)
                      +|++++|.+.....     ..+++|+.|++++|.+.+..+.   .+..+++|++|++++|.+.+ ..+..+...+++|+.
T Consensus       103 ~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~  173 (487)
T 3oja_A          103 TLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEH  173 (487)
T ss_dssp             EEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCE
T ss_pred             EEECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccE
Confidence            99999999988753     3568999999999999886542   34556899999999999954 344455546679999


Q ss_pred             EEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccc
Q 019237          242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSL  317 (344)
Q Consensus       242 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l  317 (344)
                      |++++|.+++. +. ...+++|+.|++++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..++.    ++++|++
T Consensus       174 L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          174 LNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             EECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred             EecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence            99999999854 32 2358999999999999995 65568899999999999999995 6777766655    8999998


Q ss_pred             c-cccc
Q 019237          318 E-GVLE  322 (344)
Q Consensus       318 ~-~~~~  322 (344)
                      . +.+|
T Consensus       250 ~c~~~~  255 (487)
T 3oja_A          250 HCGTLR  255 (487)
T ss_dssp             CHHHHH
T ss_pred             cCcchH
Confidence            7 4444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.5e-22  Score=187.58  Aligned_cols=232  Identities=18%  Similarity=0.175  Sum_probs=160.2

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ  130 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  130 (344)
                      ..+++.|+++++        .+++ +|  ++.+++|++|++++|.+++.  +  ++.+++|++|++++|.+.+. +  +.
T Consensus        63 l~~L~~L~Ls~n--------~l~~-~~--~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l-~--~~  124 (457)
T 3bz5_A           63 LTGLTKLICTSN--------NITT-LD--LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKL-D--VS  124 (457)
T ss_dssp             CTTCSEEECCSS--------CCSC-CC--CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCC-C--CT
T ss_pred             cCCCCEEEccCC--------cCCe-Ec--cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCee-c--CC
Confidence            467999999998        4554 23  78889999999999998873  2  77899999999998887763 3  78


Q ss_pred             cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccC
Q 019237          131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLS  210 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  210 (344)
                      .+++|++|++++|.++..+    +..+++|++|++++|......    .+..+++|++|++++|.+.+.+      +..+
T Consensus       125 ~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l~------l~~l  190 (457)
T 3bz5_A          125 QNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITELD------VSQN  190 (457)
T ss_dssp             TCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCCC------CTTC
T ss_pred             CCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccceec------cccC
Confidence            8899999999999988653    667888888888888544332    2567788888888888877743      3445


Q ss_pred             CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCC-----
Q 019237          211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC-----  285 (344)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-----  285 (344)
                      ++|+.|++++|.+.+  + +  ...+++|+.|++++|++++ +|  +..+++|+.|++++|++++..+..+.++.     
T Consensus       191 ~~L~~L~l~~N~l~~--~-~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~  262 (457)
T 3bz5_A          191 KLLNRLNCDTNNITK--L-D--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI  262 (457)
T ss_dssp             TTCCEEECCSSCCSC--C-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred             CCCCEEECcCCcCCe--e-c--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence            778888888887744  2 1  3344578888888888875 55  66777888888888887754333333332     


Q ss_pred             --CCCEEeCCCCcCccccchH-HhhccC-cccccccccccc
Q 019237          286 --SLNRLFLPHNKLSGELSEM-IQNLSG-GCTMNSLEGVLE  322 (344)
Q Consensus       286 --~L~~L~L~~n~l~~~~~~~-~~~l~~-~l~~n~l~~~~~  322 (344)
                        +|+.|++++|.+.+.+|.. +..+.. ++++|.+.+.+|
T Consensus       263 ~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          263 QTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence              3445555555544444421 112222 555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=1.3e-24  Score=193.70  Aligned_cols=269  Identities=17%  Similarity=0.163  Sum_probs=205.6

Q ss_pred             CCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcC--CCCCEEeCCCCCCCCCCccccccCCCCCcEE
Q 019237           37 RDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKL--HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYL  114 (344)
Q Consensus        37 ~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  114 (344)
                      .-|..|.++.++  ...++.++++++        .+.   +..+..+  +.++.|++++|.+.+. .+ .+..+++|++|
T Consensus        34 ~vc~~W~~~~~~--~~~~~~l~l~~~--------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L   98 (336)
T 2ast_B           34 GVCKRWYRLASD--ESLWQTLDLTGK--------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHM   98 (336)
T ss_dssp             SSCHHHHHHHTC--STTSSEEECTTC--------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEE
T ss_pred             HHHHHHHHHhcC--chhheeeccccc--------cCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEE
Confidence            345579988874  345889999987        443   4556666  8999999999998874 33 35679999999


Q ss_pred             EccCCcCCCc-CCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEcccc-ccCCCCchHHHHhhcccCcEEEec
Q 019237          115 NLSCGTSLLK-VPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKLRSLKTLVLR  192 (344)
Q Consensus       115 ~Ls~~~~~~~-~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~~~~L~~L~l~  192 (344)
                      ++++|.+... ++..+..+++|++|++++|.+.. ..+..+..+++|++|++++| .+... .+...+..+++|++|+++
T Consensus        99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B           99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECC
T ss_pred             EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCC
Confidence            9999987755 77778899999999999998763 23467888999999999999 44432 234568889999999999


Q ss_pred             CC-CCCCCCCchhhccccCC-cccEEEcCCC--CCCCCCCcchhhhccCCccEEEccCCc-CcCCchHhhhcCCCCCEEE
Q 019237          193 SC-ALPPINPSFIWHFNLST-SIETLDLSDN--NLPSSSVYPWLFNLSRNILVLDLAFNS-LRGSIPEAFQHMVSLKSLH  267 (344)
Q Consensus       193 ~~-~~~~~~~~~~~~~~~~~-~L~~L~l~~n--~l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~  267 (344)
                      +| .+++..  ....+..++ +|++|++++|  .+++ ...+.....+++|++|++++|. +++..+..+..+++|++|+
T Consensus       177 ~~~~l~~~~--~~~~~~~l~~~L~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          177 WCFDFTEKH--VQVAVAHVSETITQLNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             CCTTCCHHH--HHHHHHHSCTTCCEEECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCCcChHH--HHHHHHhcccCCCEEEeCCCcccCCH-HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence            99 776531  123355568 9999999999  4543 2233455567799999999999 7777788889999999999


Q ss_pred             ccCCc-cCCCccccccCCCCCCEEeCCCCcCccccchHHh-hccC-cccccccccccccccc
Q 019237          268 LTDNE-LEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQ-NLSG-GCTMNSLEGVLEIIKS  326 (344)
Q Consensus       268 l~~n~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~-~l~~n~l~~~~~~~~~  326 (344)
                      +++|. +.......+..+++|+.|++++| ++......+. .++. ++++|++++..|....
T Consensus       254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence            99995 33233335788999999999999 6654444554 3666 8999999999886543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.90  E-value=6.4e-23  Score=197.84  Aligned_cols=108  Identities=24%  Similarity=0.306  Sum_probs=87.5

Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      +++.|++++|.+.. .+.+..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+
T Consensus       470 ~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          470 SLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             TCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred             hhhhhhhhhccccc-ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence            44455555554322 23344556667999999999999988899999999999999999999977788899999999999


Q ss_pred             CCCCcCccccchHHhhccC-----cccccccccc
Q 019237          292 LPHNKLSGELSEMIQNLSG-----GCTMNSLEGV  320 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~l~~-----~l~~n~l~~~  320 (344)
                      |++|.+++..|+.+..++.     ++++|++...
T Consensus       549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999998988877643     8999998653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=8.1e-23  Score=177.13  Aligned_cols=210  Identities=28%  Similarity=0.284  Sum_probs=152.9

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237           84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L  163 (344)
                      ++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...+. ..+..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred             CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEE
Confidence            3688888888888764 34467778888888888887777666677888888888888888775443 556778888888


Q ss_pred             EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCcc---
Q 019237          164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL---  240 (344)
Q Consensus       164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~---  240 (344)
                      ++++|.+.....  ..+..+++|++|++++|.+.....  ...+..+++|++|++++|.+.  .+++..+....+|+   
T Consensus       106 ~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~l--~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~l~  179 (276)
T 2z62_A          106 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQ--SIYCTDLRVLHQMPLLN  179 (276)
T ss_dssp             ECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCC--EECGGGGHHHHTCTTCC
T ss_pred             ECCCCCccccCc--hhcccCCCCCEEECcCCccceecC--chhhccCCCCCEEECCCCCCC--cCCHHHhhhhhhccccc
Confidence            888887776643  236777888888888888776431  123555688888888888883  33333333344555   


Q ss_pred             -EEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237          241 -VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       241 -~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                       .|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|.++...+
T Consensus       180 l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          180 LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence             889999998854444443 4579999999999886555667889999999999999886654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.7e-22  Score=174.08  Aligned_cols=204  Identities=22%  Similarity=0.181  Sum_probs=158.6

Q ss_pred             hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237           80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS  159 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~  159 (344)
                      +.+++++++++++++.++.  +|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.++..+.   ...+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTT
T ss_pred             ccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCc
Confidence            5566778888888887765  555443  678888888888777777777888888888888888775543   257788


Q ss_pred             CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237          160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI  239 (344)
Q Consensus       160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  239 (344)
                      |++|++++|.+...+.   .+..+++|++|++++|.+...++.   .+..+++|++|++++|.+  ..+++..+...++|
T Consensus        79 L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNEL--KTLPPGLLTPTPKL  150 (290)
T ss_dssp             CCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTC
T ss_pred             CCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCC--CccChhhcccccCC
Confidence            8888888888876553   557788888888888888876642   356668899999999988  45666666667789


Q ss_pred             cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCcc
Q 019237          240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  299 (344)
                      +.|++++|+++...+..+..+++|+.|++++|+++ .+|..+..+++|+.++|++|.+.-
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            99999999998666667788899999999999998 678878888899999999998763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=5.4e-23  Score=196.43  Aligned_cols=241  Identities=24%  Similarity=0.263  Sum_probs=123.0

Q ss_pred             CCCCCCCCCCCCccccceE------EcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCc
Q 019237           28 SSWGRDNDKRDCCKWRGVR------CSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPV  101 (344)
Q Consensus        28 ~~w~~~~~~~~~c~~~~~~------c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  101 (344)
                      ..|.   .+.++|.|.+..      |......++.++++++        .++ .+|..+.  ++|++|++++|.++.  +
T Consensus        13 ~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n--------~L~-~lp~~l~--~~L~~L~L~~N~l~~--l   76 (622)
T 3g06_A           13 SAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLTS--L   76 (622)
T ss_dssp             HHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS--------CCS-CCCSCCC--TTCSEEEECSCCCSC--C
T ss_pred             HHHH---hcCCcchhccccccCcccccccCCCCcEEEecCC--------CcC-ccChhhC--CCCcEEEecCCCCCC--C
Confidence            4565   456788885421      1111234778888887        444 4454443  577777777777764  4


Q ss_pred             cccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHh
Q 019237          102 PEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVA  181 (344)
Q Consensus       102 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~  181 (344)
                      +.   .+++|++|++++|.+.. +|.   .+++|++|++++|.+...+.     .+++|++|++++|.+...+.      
T Consensus        77 p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~------  138 (622)
T 3g06_A           77 PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------  138 (622)
T ss_dssp             CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC------
T ss_pred             CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC------
Confidence            44   35677777777776543 443   45667777777776665442     34556666666655554432      


Q ss_pred             hcccCcEEEecCCCCCCCCCchhhcc--------------ccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCC
Q 019237          182 KLRSLKTLVLRSCALPPINPSFIWHF--------------NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN  247 (344)
Q Consensus       182 ~~~~L~~L~l~~~~~~~~~~~~~~~~--------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n  247 (344)
                      .+++|++|++++|.+.+.+.. ...+              ..+++|+.|++++|.+.+  ++.    ..++|+.|++++|
T Consensus       139 ~l~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~--l~~----~~~~L~~L~L~~N  211 (622)
T 3g06_A          139 LPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS--LPT----LPSELYKLWAYNN  211 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCC----CCTTCCEEECCSS
T ss_pred             CCCCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC--CCC----ccchhhEEECcCC
Confidence            124555555555555443221 0000              112555666666665522  221    1124444444444


Q ss_pred             cCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-cccccccc
Q 019237          248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLE  318 (344)
Q Consensus       248 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~  318 (344)
                      .++ .+|.   .+++|+.|++++|.+++ +|   ..+++|+.|+|++|.++ .+|..+..+.. ++++|+|+
T Consensus       212 ~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          212 RLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCC
T ss_pred             ccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCCC
Confidence            444 2221   12445555555555552 33   23345555555555555 33332222333 55555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.7e-22  Score=174.80  Aligned_cols=211  Identities=26%  Similarity=0.276  Sum_probs=143.7

Q ss_pred             hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237           80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS  159 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~  159 (344)
                      ...+++|+.|+++++.+..  + +.+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+...+. ..+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~  110 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPN-GVFDKLTN  110 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCTT
T ss_pred             cccccceeeeeeCCCCccc--c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccCh-hHhcCCcC
Confidence            4566777888888777654  2 3456677788888877776542  356777777788887777775443 44567777


Q ss_pred             CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237          160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI  239 (344)
Q Consensus       160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  239 (344)
                      |++|++++|.+.....  ..+..+++|++|++++|.+.+.++.   .+..+++|++|++++|.+.  .+++..+..+++|
T Consensus       111 L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L  183 (272)
T 3rfs_A          111 LKELVLVENQLQSLPD--GVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQLQ--SLPEGVFDKLTQL  183 (272)
T ss_dssp             CCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTC
T ss_pred             CCEEECCCCcCCccCH--HHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCcC--ccCHHHhcCCccC
Confidence            7777777777766543  2456677777777777777665542   2445577777777777773  4445445555677


Q ss_pred             cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      ++|++++|.+++..+..+..+++|+.|++++|.+.+       .+++|+.++++.|.++|.+|..++.+..
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            777777777776666667777777777777776653       3456777777777777777777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=3.2e-22  Score=173.40  Aligned_cols=212  Identities=24%  Similarity=0.207  Sum_probs=173.6

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ..++.|+++++        .+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..
T Consensus        28 ~~l~~L~ls~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             TTCCEEECTTC--------CCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CCccEEECCCC--------cccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            46999999999        67766666899999999999999999874 4557889999999999999998888888999


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++|++|++++|.+..... ..+..+++|++|++++|.+.... ++..+..+++|++|++++|.+.+.++.....+..++
T Consensus        99 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  176 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             CccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence            9999999999999987654 35788999999999999988742 124788899999999999999887653333333333


Q ss_pred             ccc-EEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCc
Q 019237          212 SIE-TLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI  277 (344)
Q Consensus       212 ~L~-~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  277 (344)
                      .+. .|++++|.+.  .+++..+... +|+.|++++|.+++..+..+..+++|+.|++++|++....
T Consensus       177 ~l~l~L~ls~n~l~--~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          177 LLNLSLDLSLNPMN--FIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             TCCEEEECCSSCCC--EECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             ccceeeecCCCccc--ccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            333 8999999993  4555555444 8999999999999766777889999999999999998543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=1.3e-21  Score=181.26  Aligned_cols=213  Identities=24%  Similarity=0.330  Sum_probs=112.6

Q ss_pred             ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc
Q 019237           71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS  150 (344)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~  150 (344)
                      .+++ +| .++++++|++|++++|.+++  ++..   ..+|++|++++|.+.+ +| .+..+++|++|++++|.+...+.
T Consensus       142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~  212 (454)
T 1jl5_A          142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD  212 (454)
T ss_dssp             CCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred             CCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC
Confidence            4443 44 36666666666666666654  3332   2366666666665554 34 46666666666666666654332


Q ss_pred             hhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcc
Q 019237          151 LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYP  230 (344)
Q Consensus       151 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  230 (344)
                           ..++|++|++++|.+...+    .+..+++|++|++++|.+.+.+..       +++|++|++++|.+.+  ++.
T Consensus       213 -----~~~~L~~L~l~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~N~l~~--l~~  274 (454)
T 1jl5_A          213 -----LPLSLESIVAGNNILEELP----ELQNLPFLTTIYADNNLLKTLPDL-------PPSLEALNVRDNYLTD--LPE  274 (454)
T ss_dssp             -----CCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSSCCSC-------CTTCCEEECCSSCCSC--CCC
T ss_pred             -----CcCcccEEECcCCcCCccc----ccCCCCCCCEEECCCCcCCccccc-------ccccCEEECCCCcccc--cCc
Confidence                 1235666666666555332    245666667777766666553321       1455555555555421  211


Q ss_pred             hhhhccCCccEEEccCCcCcC--CchHhh-------------hcC-CCCCEEEccCCccCCCccccccCCCCCCEEeCCC
Q 019237          231 WLFNLSRNILVLDLAFNSLRG--SIPEAF-------------QHM-VSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPH  294 (344)
Q Consensus       231 ~~~~~~~~L~~L~ls~n~l~~--~~~~~~-------------~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~  294 (344)
                          ..++|++|++++|.+++  .+|..+             ..+ ++|+.|++++|++++ +|..   +++|+.|++++
T Consensus       275 ----~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~  346 (454)
T 1jl5_A          275 ----LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF  346 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             ----ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence                11244444444444443  111111             111 366666666666663 4443   35677777777


Q ss_pred             CcCccccchHHhhccC-ccccccccc
Q 019237          295 NKLSGELSEMIQNLSG-GCTMNSLEG  319 (344)
Q Consensus       295 n~l~~~~~~~~~~l~~-~l~~n~l~~  319 (344)
                      |.++ .+|..+..+.. ++++|++++
T Consensus       347 N~l~-~lp~~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          347 NHLA-EVPELPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             SCCS-CCCCCCTTCCEEECCSSCCSS
T ss_pred             Cccc-cccchhhhccEEECCCCCCCc
Confidence            7766 34442223333 677777766

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=2.6e-23  Score=189.02  Aligned_cols=248  Identities=19%  Similarity=0.227  Sum_probs=129.8

Q ss_pred             ccchhhhcCCCCCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCc---CCCcCCccc-------ccCCCCcEEEcc
Q 019237           75 TISPALLKLHDLRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGT---SLLKVPRPF-------QYLSGLVYLRLE  141 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~---~~~~~~~~~-------~~l~~L~~L~ls  141 (344)
                      .++..+..+++|++|++++|.++...   ++..+..+++|++|++++|.   +.+.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            34555666666666666666654431   11234456666666666542   223334333       455666666666


Q ss_pred             CCCCCCCC---chhhhhcCCCCCEEEccccccCCCC--chHHHHhhc---------ccCcEEEecCCCCCCCC-Cchhhc
Q 019237          142 NSNLFSLG---SLEWLSHLSSLRHLDLSYINLTKSS--DWFQVVAKL---------RSLKTLVLRSCALPPIN-PSFIWH  206 (344)
Q Consensus       142 ~~~l~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~---------~~L~~L~l~~~~~~~~~-~~~~~~  206 (344)
                      +|.+....   .+..+..+++|++|++++|.+....  .+...+..+         ++|++|++++|.+.... +.+...
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            66665422   2234556666666666666654221  112223333         56666666666655221 111123


Q ss_pred             cccCCcccEEEcCCCCCCCCC---CcchhhhccCCccEEEccCCcCc----CCchHhhhcCCCCCEEEccCCccCCC---
Q 019237          207 FNLSTSIETLDLSDNNLPSSS---VYPWLFNLSRNILVLDLAFNSLR----GSIPEAFQHMVSLKSLHLTDNELEGG---  276 (344)
Q Consensus       207 ~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~ls~n~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~---  276 (344)
                      +..+++|++|++++|.+....   +.+.....+++|++|++++|.++    ..++..+..+++|++|++++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            334456666666666663101   12212234446666666666664    34555666666666666666666543   


Q ss_pred             -ccccc--cCCCCCCEEeCCCCcCcc----ccchHH-hhccC----cccccccccccc
Q 019237          277 -IPKFF--GNMCSLNRLFLPHNKLSG----ELSEMI-QNLSG----GCTMNSLEGVLE  322 (344)
Q Consensus       277 -~~~~l--~~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~----~l~~n~l~~~~~  322 (344)
                       ++..+  ..+++|+.|+|++|.+++    .+|..+ ..+++    ++++|++++..+
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             34444  226666666666666665    355544 22333    666666665553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=9.1e-24  Score=196.35  Aligned_cols=245  Identities=20%  Similarity=0.203  Sum_probs=106.4

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccc-----cCCCCCcEEEccCCcCCCcC--
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFI-----GSLSRLRYLNLSCGTSLLKV--  125 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l-----~~l~~L~~L~Ls~~~~~~~~--  125 (344)
                      +++.|++++|.+.+.+    ...++..+..+++|++|++++|.++.. .+..+     ...++|++|++++|.+....  
T Consensus        86 ~L~~L~L~~n~i~~~~----~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAG----CGVLSSTLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CCCEEECTTSCCBGGG----HHHHHHHTTSCTTCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             ceeEEEccCCCCCHHH----HHHHHHHHccCCceeEEECCCCcCchH-HHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            4666666665221100    024455566666666666666665432 11111     12345666666655554422  


Q ss_pred             --CcccccCCCCcEEEccCCCCCCCCchhhhh-----cCCCCCEEEccccccCCCC--chHHHHhhcccCcEEEecCCCC
Q 019237          126 --PRPFQYLSGLVYLRLENSNLFSLGSLEWLS-----HLSSLRHLDLSYINLTKSS--DWFQVVAKLRSLKTLVLRSCAL  196 (344)
Q Consensus       126 --~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~  196 (344)
                        +..+..+++|++|++++|.+..... ..+.     ..++|++|++++|.+....  .+...+..+++|++|++++|.+
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHH-HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHH-HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence              3333445566666666655442211 1111     1345666666665554431  1233444555666666665554


Q ss_pred             CCCCCch--hhccccCCcccEEEcCCCCCCCCCC--cchhhhccCCccEEEccCCcCcCCchHhhhc-----CCCCCEEE
Q 019237          197 PPINPSF--IWHFNLSTSIETLDLSDNNLPSSSV--YPWLFNLSRNILVLDLAFNSLRGSIPEAFQH-----MVSLKSLH  267 (344)
Q Consensus       197 ~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-----~~~L~~L~  267 (344)
                      .+.....  ...+..+++|++|++++|.++....  .+.....+++|++|++++|.+++..+..+..     .++|++|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            3321000  0011123455555555555422000  1111222334555555555544322222211     13444444


Q ss_pred             ccCCccCCC----ccccccCCCCCCEEeCCCCcCccccch
Q 019237          268 LTDNELEGG----IPKFFGNMCSLNRLFLPHNKLSGELSE  303 (344)
Q Consensus       268 l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~  303 (344)
                      +++|.+++.    ++..+..+++|+.|++++|.+++..+.
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            444444432    233333445555555555555444333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=2.9e-21  Score=164.95  Aligned_cols=192  Identities=23%  Similarity=0.308  Sum_probs=109.9

Q ss_pred             CCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEcc
Q 019237           38 DCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLS  117 (344)
Q Consensus        38 ~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls  117 (344)
                      +|+.|.|+.|..   ..+.++++++        .++ .+|..+.  +.+++|++++|.+... .+..+..+++|++|+++
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~--------~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~   67 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGK--------SLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLD   67 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTC--------CCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred             cCCCCCceEcCC---CCeEEecCCC--------Ccc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECC
Confidence            578899999942   3456777776        333 3444333  4677788887777764 45556667777777777


Q ss_pred             CCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCC
Q 019237          118 CGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP  197 (344)
Q Consensus       118 ~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  197 (344)
                      +|.+.+..+..+..+++|++|++++|.+...+. .                          .+..+++|++|++++|.+.
T Consensus        68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~--------------------------~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-G--------------------------VFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-T--------------------------TTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCccCHhHhccCCcCCEEECCCCcccccCh-h--------------------------HhcccCCCCEEEcCCCcCC
Confidence            776666555555666666666666665553321 1                          1223333444444444333


Q ss_pred             CCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCc
Q 019237          198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI  277 (344)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  277 (344)
                      ..+                             +..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus       121 ~~~-----------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          121 SLP-----------------------------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCC-----------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcC-----------------------------hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            322                             222223335555555555555444445556666666666666666544


Q ss_pred             cccccCCCCCCEEeCCCCcCccc
Q 019237          278 PKFFGNMCSLNRLFLPHNKLSGE  300 (344)
Q Consensus       278 ~~~l~~l~~L~~L~L~~n~l~~~  300 (344)
                      +..+..+++|+.|++++|.++..
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            55566666777777777766644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.2e-21  Score=167.72  Aligned_cols=222  Identities=24%  Similarity=0.302  Sum_probs=181.3

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      .+..+++..+.+...   .....+++|+.|++++|.+.. + ..+..+++|++|++++|.+...   ..+..+++|++|+
T Consensus        20 ~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~   91 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEE
T ss_pred             HHHHHHhcCcccccc---cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEE
Confidence            344566767666542   334568999999999887653 2 3578899999999999999864   4688999999999


Q ss_pred             ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237          165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL  244 (344)
Q Consensus       165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  244 (344)
                      +++|.+.....  ..+..+++|++|++++|.+.+.++.   .+..+++|++|++++|.+.  .+++..+..+++|+.|++
T Consensus        92 L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           92 LTGNQLQSLPN--GVFDKLTNLKELVLVENQLQSLPDG---VFDKLTNLTYLNLAHNQLQ--SLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             CTTSCCCCCCT--TTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEEC
T ss_pred             CCCCccCccCh--hHhcCCcCCCEEECCCCcCCccCHH---HhccCCCCCEEECCCCccC--ccCHHHhccCccCCEEEC
Confidence            99999987754  3578899999999999999887653   3566799999999999994  566666667779999999


Q ss_pred             cCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-ccccccccccccc
Q 019237          245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLEGVLEI  323 (344)
Q Consensus       245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~~~~~  323 (344)
                      ++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..|.    +.. ++++|.++|.+|.
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~----l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG----IRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT----THHHHHHHHHTGGGBBC
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH----HHHHHHHHHhCCCcccC
Confidence            99999977777889999999999999999987777789999999999999999876552    222 7788999998885


Q ss_pred             cc
Q 019237          324 IK  325 (344)
Q Consensus       324 ~~  325 (344)
                      ..
T Consensus       241 ~~  242 (272)
T 3rfs_A          241 SA  242 (272)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=3.7e-23  Score=187.97  Aligned_cols=242  Identities=22%  Similarity=0.232  Sum_probs=183.9

Q ss_pred             CcEEEEEcCCCCcccccCcccccc----cchhhhcCCCCCEEeCCCCCCCCC--Cccccc-------cCCCCCcEEEccC
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGT----ISPALLKLHDLRHLDLSNNHFGGS--PVPEFI-------GSLSRLRYLNLSC  118 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l-------~~l~~L~~L~Ls~  118 (344)
                      ++++.|+|+++        .+.+.    ++..+..+++|++|++++|.+...  .+|..+       ..+++|++|++++
T Consensus        32 ~~L~~L~L~~n--------~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           32 DSVKEIVLSGN--------TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             SCCCEEECTTS--------EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             CCccEEECCCC--------CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            56999999999        55554    444577899999999999755431  134433       6899999999999


Q ss_pred             CcCCC----cCCcccccCCCCcEEEccCCCCCCCCc---hhhhhcC---------CCCCEEEccccccCCC--CchHHHH
Q 019237          119 GTSLL----KVPRPFQYLSGLVYLRLENSNLFSLGS---LEWLSHL---------SSLRHLDLSYINLTKS--SDWFQVV  180 (344)
Q Consensus       119 ~~~~~----~~~~~~~~l~~L~~L~ls~~~l~~~~~---~~~l~~~---------~~L~~L~l~~~~~~~~--~~~~~~l  180 (344)
                      |.+..    .++..+..+++|++|++++|.+.....   ...+..+         ++|++|++++|.+...  ..+...+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99887    466778889999999999999863321   1223444         8999999999998743  3333577


Q ss_pred             hhcccCcEEEecCCCCCCCCC-chhh-ccccCCcccEEEcCCCCCCC---CCCcchhhhccCCccEEEccCCcCcCC---
Q 019237          181 AKLRSLKTLVLRSCALPPINP-SFIW-HFNLSTSIETLDLSDNNLPS---SSVYPWLFNLSRNILVLDLAFNSLRGS---  252 (344)
Q Consensus       181 ~~~~~L~~L~l~~~~~~~~~~-~~~~-~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~~L~~L~ls~n~l~~~---  252 (344)
                      ..+++|++|++++|.+..... .... .+..+++|++|++++|.++.   ..++. ....+++|++|++++|.+++.   
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHH
Confidence            889999999999998873210 0111 45566899999999999842   02333 345567999999999999864   


Q ss_pred             -chHhhhc--CCCCCEEEccCCccCC----Cccccc-cCCCCCCEEeCCCCcCccccc
Q 019237          253 -IPEAFQH--MVSLKSLHLTDNELEG----GIPKFF-GNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       253 -~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~L~~n~l~~~~~  302 (344)
                       ++..+..  +++|++|++++|.+++    .+|..+ .++++|+.|++++|.+++..+
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             5666644  8999999999999996    377777 568999999999999997764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=3.1e-21  Score=184.26  Aligned_cols=222  Identities=23%  Similarity=0.246  Sum_probs=112.9

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      .+++.|++++|        .++ .+|.   .+++|++|++++|.++.  ++.   .+++|++|++++|.+.+. |.   .
T Consensus        61 ~~L~~L~L~~N--------~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l-~~---~  119 (622)
T 3g06_A           61 AHITTLVIPDN--------NLT-SLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTHL-PA---L  119 (622)
T ss_dssp             TTCSEEEECSC--------CCS-CCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCCCC-CC---C
T ss_pred             CCCcEEEecCC--------CCC-CCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCCCC-CC---C
Confidence            56888888888        343 2443   45677778888777765  444   467777777776665542 22   3


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhh--------------cccCcEEEecCCCCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAK--------------LRSLKTLVLRSCALP  197 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~--------------~~~L~~L~l~~~~~~  197 (344)
                      +.+|++|++++|.++..+.     .+++|++|++++|.+...+..+..+..              +++|+.|++++|.+.
T Consensus       120 l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          120 PSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence            4556666666665554432     135555555555555443221112222              266777777777766


Q ss_pred             CCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCc
Q 019237          198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGI  277 (344)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  277 (344)
                      +.+..       +++|+.|++++|.+.  .++.    ..++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+
T Consensus       195 ~l~~~-------~~~L~~L~L~~N~l~--~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l  256 (622)
T 3g06_A          195 SLPTL-------PSELYKLWAYNNRLT--SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL  256 (622)
T ss_dssp             CCCCC-------CTTCCEEECCSSCCS--SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred             CCCCc-------cchhhEEECcCCccc--ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence            54331       144555555555542  2221    12345555555555442 33   23344444555544444 23


Q ss_pred             cccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccc
Q 019237          278 PKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVL  321 (344)
Q Consensus       278 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~  321 (344)
                      |.   .+++|+.|+|++|.++ .+|..+..+++    ++++|++++.+
T Consensus       257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred             Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence            33   2344444444444444 33444444433    44444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=7.9e-23  Score=180.25  Aligned_cols=228  Identities=20%  Similarity=0.122  Sum_probs=135.6

Q ss_pred             CCCEEeCCCCCCCCCCcccc--ccCCCCCcEEEccCCcCCCcCCccc--ccCCCCcEEEccCCCCCCCCc---hhhhhcC
Q 019237           85 DLRHLDLSNNHFGGSPVPEF--IGSLSRLRYLNLSCGTSLLKVPRPF--QYLSGLVYLRLENSNLFSLGS---LEWLSHL  157 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~ls~~~l~~~~~---~~~l~~~  157 (344)
                      .++.+.+.++.++...+...  +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.....   ...+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46666776666543211111  1124567777777777777777666  667777777777777764221   0223457


Q ss_pred             CCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch-hhccccCCcccEEEcCCCCCCCCCCcch---hh
Q 019237          158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF-IWHFNLSTSIETLDLSDNNLPSSSVYPW---LF  233 (344)
Q Consensus       158 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~  233 (344)
                      ++|++|++++|.+.....  ..+..+++|++|++++|.+.+..... ...+..+++|++|++++|.+.  .++..   +.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~  220 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSC--EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALA  220 (310)
T ss_dssp             SCCCEEEEECCSSCCCCT--TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhH--HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHH
Confidence            777777777777765542  35566777777777777654311000 011234467777777777772  22221   23


Q ss_pred             hccCCccEEEccCCcCcCCchHhhhcC---CCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccc-cchHHhhcc
Q 019237          234 NLSRNILVLDLAFNSLRGSIPEAFQHM---VSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE-LSEMIQNLS  309 (344)
Q Consensus       234 ~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  309 (344)
                      ..+++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|+|++|.+++. .+..+..+.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~  297 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVD  297 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCcc
Confidence            444577777777777776656555554   57777777777777 5666553  6777777777777752 233333333


Q ss_pred             C-ccccccccc
Q 019237          310 G-GCTMNSLEG  319 (344)
Q Consensus       310 ~-~l~~n~l~~  319 (344)
                      . ++++|+++.
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            3 677777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=3.4e-21  Score=169.53  Aligned_cols=192  Identities=19%  Similarity=0.279  Sum_probs=90.9

Q ss_pred             cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      .+++|++|++++|.+..  ++ .+..+++|++|++++|.+....+  +..+++|++|++++|.+...+   .+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS---AIAGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---GGTTCTTCC
T ss_pred             HcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch---hhcCCCCCC
Confidence            34445555555554443  22 34445555555555444433222  444555555555555544332   244455555


Q ss_pred             EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237          162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV  241 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  241 (344)
                      +|++++|.+....    .+..+++|++|++++|.+.+.++     +..+++|++|++++|.+.  .+++  ...+++|++
T Consensus       111 ~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~--~~~~--l~~l~~L~~  177 (308)
T 1h6u_A          111 TLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVS--DLTP--LANLSKLTT  177 (308)
T ss_dssp             EEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCE
T ss_pred             EEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCC--CChh--hcCCCCCCE
Confidence            5555555544432    24445555555555555444322     333355555555555552  2222  233345555


Q ss_pred             EEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237          242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       242 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      |++++|.+++..+  +..+++|++|++++|++++ ++ .+..+++|+.|++++|.++
T Consensus       178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          178 LKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEEEE
T ss_pred             EECCCCccCcChh--hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCeee
Confidence            5555555553222  4455555555555555553 22 1445555555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.87  E-value=1e-23  Score=195.95  Aligned_cols=283  Identities=20%  Similarity=0.183  Sum_probs=162.9

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhh-cCC----CCCEEeCCCCCCCCC---CccccccCCCCCcEEEccCCcCCC
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALL-KLH----DLRHLDLSNNHFGGS---PVPEFIGSLSRLRYLNLSCGTSLL  123 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~----~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~Ls~~~~~~  123 (344)
                      +++++|+++++        .+.+..+..+. .++    +|++|++++|.++..   .++..+..+++|++|++++|.+..
T Consensus        56 ~~L~~L~Ls~n--------~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           56 PALAELNLRSN--------ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             TTCCEEECTTC--------CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCcCEEeCCCC--------cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            45677777776        33333222222 233    577777777776532   145566677777777777766544


Q ss_pred             cCCcccc-----cCCCCcEEEccCCCCCCCCc---hhhhhcCCCCCEEEccccccCCCCc--hHHHHh-hcccCcEEEec
Q 019237          124 KVPRPFQ-----YLSGLVYLRLENSNLFSLGS---LEWLSHLSSLRHLDLSYINLTKSSD--WFQVVA-KLRSLKTLVLR  192 (344)
Q Consensus       124 ~~~~~~~-----~l~~L~~L~ls~~~l~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~l~-~~~~L~~L~l~  192 (344)
                      ..+..+.     ..++|++|++++|.++....   ...+..+++|++|++++|.+.....  +...+. ..++|++|+++
T Consensus       128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  207 (461)
T 1z7x_W          128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE  207 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence            3333222     23467777777776664321   2445566777777777776544311  111111 24477777777


Q ss_pred             CCCCCCCCCc-hhhccccCCcccEEEcCCCCCCCCC---CcchhhhccCCccEEEccCCcCcCC----chHhhhcCCCCC
Q 019237          193 SCALPPINPS-FIWHFNLSTSIETLDLSDNNLPSSS---VYPWLFNLSRNILVLDLAFNSLRGS----IPEAFQHMVSLK  264 (344)
Q Consensus       193 ~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~  264 (344)
                      +|.+...... +...+..+++|++|++++|.+.+..   +.+.+....++|++|++++|.+++.    ++..+..+++|+
T Consensus       208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  287 (461)
T 1z7x_W          208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK  287 (461)
T ss_dssp             TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred             CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence            7776653211 1223344577888888888763311   1122222345788888888887743    566677778888


Q ss_pred             EEEccCCccCCCcccccc-----CCCCCCEEeCCCCcCccc----cchHHhhccC----ccccccccccccccccccccc
Q 019237          265 SLHLTDNELEGGIPKFFG-----NMCSLNRLFLPHNKLSGE----LSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGR  331 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~  331 (344)
                      +|++++|.+.+..+..+.     ..++|+.|++++|.+++.    ++..+..+++    ++++|.+++..+...  ....
T Consensus       288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~l  365 (461)
T 1z7x_W          288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL--CQGL  365 (461)
T ss_dssp             EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH--HHHH
T ss_pred             eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH--HHHH
Confidence            888888877643333222     236888888888888765    3444544455    788888776543211  1111


Q ss_pred             -ccCCCCcceEecC
Q 019237          332 -KSMRPLDWIAIAY  344 (344)
Q Consensus       332 -~~l~~L~~l~l~~  344 (344)
                       ...+.|+.|++++
T Consensus       366 ~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          366 GQPGSVLRVLWLAD  379 (461)
T ss_dssp             TSTTCCCCEEECTT
T ss_pred             cCCCCceEEEECCC
Confidence             1266788887753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2.8e-22  Score=180.51  Aligned_cols=224  Identities=21%  Similarity=0.202  Sum_probs=98.4

Q ss_pred             hhhhcCC-CCCEEeCCCCCCCCCCccccccCC-----CCCcEEEccCCcCCCcCCcccc----cC-CCCcEEEccCCCCC
Q 019237           78 PALLKLH-DLRHLDLSNNHFGGSPVPEFIGSL-----SRLRYLNLSCGTSLLKVPRPFQ----YL-SGLVYLRLENSNLF  146 (344)
Q Consensus        78 ~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l-----~~L~~L~Ls~~~~~~~~~~~~~----~l-~~L~~L~ls~~~l~  146 (344)
                      ..+..++ +|++|++++|.++.. .+..+..+     ++|++|++++|.+....+..+.    .+ ++|++|++++|.+.
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            4444555 555555555555443 22223222     5555555555555444433222    22 45555555555554


Q ss_pred             CCCch---hhhhc-CCCCCEEEccccccCCCC--chHHHHhhcc-cCcEEEecCCCCCCCCCchh-hccccC-CcccEEE
Q 019237          147 SLGSL---EWLSH-LSSLRHLDLSYINLTKSS--DWFQVVAKLR-SLKTLVLRSCALPPINPSFI-WHFNLS-TSIETLD  217 (344)
Q Consensus       147 ~~~~~---~~l~~-~~~L~~L~l~~~~~~~~~--~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~-~~~~~~-~~L~~L~  217 (344)
                      ..+..   ..+.. .++|++|++++|.+....  .+...+..++ +|++|++++|.+.+...... ..+... ++|++|+
T Consensus       123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~  202 (362)
T 3goz_A          123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD  202 (362)
T ss_dssp             GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEE
Confidence            33321   11122 235555555555554331  1222333333 55555555555544332111 112222 3555555


Q ss_pred             cCCCCCCCCC---CcchhhhccCCccEEEccCCcCcCCch----HhhhcCCCCCEEEccCCccCCC-------ccccccC
Q 019237          218 LSDNNLPSSS---VYPWLFNLSRNILVLDLAFNSLRGSIP----EAFQHMVSLKSLHLTDNELEGG-------IPKFFGN  283 (344)
Q Consensus       218 l~~n~l~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~l~~  283 (344)
                      +++|.+.+..   ++..+....++|++|++++|.+++..+    ..+..+++|++|++++|.+.+.       ++..+..
T Consensus       203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~  282 (362)
T 3goz_A          203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN  282 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred             CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence            5555552210   111222222355555555555554332    2233445555555555553321       1223444


Q ss_pred             CCCCCEEeCCCCcCccccc
Q 019237          284 MCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       284 l~~L~~L~L~~n~l~~~~~  302 (344)
                      +++|+.|++++|.+.+..+
T Consensus       283 l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          283 IQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CCEEEEECTTSCBCCGGGC
T ss_pred             CCceEEEecCCCcCCCcch
Confidence            5555555555555554433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.8e-22  Score=175.83  Aligned_cols=236  Identities=20%  Similarity=0.224  Sum_probs=173.6

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccc--cCCCCCcEEEccCCcCCCcCC---
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFI--GSLSRLRYLNLSCGTSLLKVP---  126 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~Ls~~~~~~~~~---  126 (344)
                      .+++.+.+.+..+.+   ..+. .+. .+..+++|++|++++|.+.+. .+..+  ..+++|++|++++|.+.+..+   
T Consensus        64 ~~l~~l~l~~~~~~~---~~~~-~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~  137 (310)
T 4glp_A           64 LRVRRLTVGAAQVPA---QLLV-GAL-RVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLA  137 (310)
T ss_dssp             CCCCEEEECSCCCBH---HHHH-HHH-HHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHH
T ss_pred             cceeEEEEeCCcCCH---HHHH-HHH-HhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhH
Confidence            356778887773221   1111 111 233456799999999999876 66666  889999999999999887655   


Q ss_pred             -cccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH--HHHhhcccCcEEEecCCCCCCCCCch
Q 019237          127 -RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF--QVVAKLRSLKTLVLRSCALPPINPSF  203 (344)
Q Consensus       127 -~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~  203 (344)
                       ..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+.....+.  ..+..+++|++|++++|.++..+...
T Consensus       138 ~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  216 (310)
T 4glp_A          138 ELQQWLKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC  216 (310)
T ss_dssp             HHHTTBCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH
T ss_pred             HHHhhhccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH
Confidence             344578999999999999976553 56788999999999999875431111  12357889999999999987543321


Q ss_pred             hhccccCCcccEEEcCCCCCCCCCCcchhhhc--cCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccc
Q 019237          204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL--SRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFF  281 (344)
Q Consensus       204 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  281 (344)
                      ...+..+++|++|++++|.+.+ ..++.+...  +++|++|++++|.++ .+|..+.  ++|++|++++|++++ +|. +
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~  290 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-P  290 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-T
T ss_pred             HHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-h
Confidence            2234566899999999999954 334433333  268999999999999 6676664  799999999999994 444 6


Q ss_pred             cCCCCCCEEeCCCCcCccc
Q 019237          282 GNMCSLNRLFLPHNKLSGE  300 (344)
Q Consensus       282 ~~l~~L~~L~L~~n~l~~~  300 (344)
                      ..+++|+.|+|++|.+++.
T Consensus       291 ~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          291 DELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             TSCCCCSCEECSSTTTSCC
T ss_pred             hhCCCccEEECcCCCCCCC
Confidence            7889999999999998753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=2.1e-20  Score=161.43  Aligned_cols=201  Identities=23%  Similarity=0.304  Sum_probs=145.5

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      ..+.++++++.++.  +|..+.  +++++|++++|.+....+..|..+++|++|++++|.++..+. ..+..++      
T Consensus        17 ~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-~~~~~l~------   85 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-GIFKELK------   85 (270)
T ss_dssp             TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-TTTSSCT------
T ss_pred             CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-hhhcCCC------
Confidence            46778888887765  554432  567777777777666655666777777777777776664432 2233444      


Q ss_pred             ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237          165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL  244 (344)
Q Consensus       165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  244 (344)
                                          +|++|++++|.+...++   ..+..+++|++|++++|.+  ..+++..+..+++|++|++
T Consensus        86 --------------------~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           86 --------------------NLETLWVTDNKLQALPI---GVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             --------------------TCCEEECCSSCCCCCCT---TTTTTCSSCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC
T ss_pred             --------------------CCCEEECCCCcCCcCCH---hHcccccCCCEEECCCCcc--CeeCHHHhCcCcCCCEEEC
Confidence                                45555555555444433   1344557888888888888  3455655667779999999


Q ss_pred             cCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccccc
Q 019237          245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGV  320 (344)
Q Consensus       245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~  320 (344)
                      ++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++    ++++|++...
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            999999766777899999999999999999766667889999999999999999766666666665    8999998654


Q ss_pred             c
Q 019237          321 L  321 (344)
Q Consensus       321 ~  321 (344)
                      -
T Consensus       221 c  221 (270)
T 2o6q_A          221 C  221 (270)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=1.7e-20  Score=173.73  Aligned_cols=202  Identities=24%  Similarity=0.271  Sum_probs=105.5

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      +|++|++++|.+++  +| .++.+++|++|++++|.+.+ +|..   ..+|++|++++|.+...+   .+..+++|++|+
T Consensus       132 ~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~  201 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP---ELQNLPFLTAIY  201 (454)
T ss_dssp             TCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC---CCTTCTTCCEEE
T ss_pred             CCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc---cccCCCCCCEEE
Confidence            45555555555543  33 35555555555555555443 3322   135555555555555432   245566666666


Q ss_pred             ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237          165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL  244 (344)
Q Consensus       165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  244 (344)
                      +++|.+...+.      ..++|++|++++|.+...+.     +..+++|++|++++|.+.  .++.    ..++|+.|++
T Consensus       202 l~~N~l~~l~~------~~~~L~~L~l~~n~l~~lp~-----~~~l~~L~~L~l~~N~l~--~l~~----~~~~L~~L~l  264 (454)
T 1jl5_A          202 ADNNSLKKLPD------LPLSLESIVAGNNILEELPE-----LQNLPFLTTIYADNNLLK--TLPD----LPPSLEALNV  264 (454)
T ss_dssp             CCSSCCSSCCC------CCTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCS--SCCS----CCTTCCEEEC
T ss_pred             CCCCcCCcCCC------CcCcccEEECcCCcCCcccc-----cCCCCCCCEEECCCCcCC--cccc----cccccCEEEC
Confidence            66666554432      11356666666666554331     344567777777777763  2222    2246777777


Q ss_pred             cCCcCcCCchHhhhcCCCCCEEEccCCccCC--Cccccc-------------cCC-CCCCEEeCCCCcCccccchHHhhc
Q 019237          245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEG--GIPKFF-------------GNM-CSLNRLFLPHNKLSGELSEMIQNL  308 (344)
Q Consensus       245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l-------------~~l-~~L~~L~L~~n~l~~~~~~~~~~l  308 (344)
                      ++|.+++ +|..   .++|+.|++++|++++  .+|..+             ..+ ++|+.|++++|.+++ +|..+..+
T Consensus       265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~~~L  339 (454)
T 1jl5_A          265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL  339 (454)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred             CCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccccCCcC
Confidence            7777763 4432   2567777777776664  222111             111 355555555555553 34333333


Q ss_pred             cC-cccccccc
Q 019237          309 SG-GCTMNSLE  318 (344)
Q Consensus       309 ~~-~l~~n~l~  318 (344)
                      .. ++++|+++
T Consensus       340 ~~L~L~~N~l~  350 (454)
T 1jl5_A          340 ERLIASFNHLA  350 (454)
T ss_dssp             CEEECCSSCCS
T ss_pred             CEEECCCCccc
Confidence            33 55666555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=5.2e-22  Score=178.81  Aligned_cols=250  Identities=20%  Similarity=0.166  Sum_probs=185.8

Q ss_pred             ccccccchhhhcCCCCCEEeCCCCCCCCCCcc----ccccCCC-CCcEEEccCCcCCCcCCcccccC-----CCCcEEEc
Q 019237           71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVP----EFIGSLS-RLRYLNLSCGTSLLKVPRPFQYL-----SGLVYLRL  140 (344)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~-~L~~L~Ls~~~~~~~~~~~~~~l-----~~L~~L~l  140 (344)
                      .+.+.+|..+...++|++|++++|.++.. .+    ..+..++ +|++|++++|.+....+..+..+     ++|++|++
T Consensus         9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A            9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             TTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             cchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence            78888888888888899999999999875 33    6677888 89999999999988777777664     89999999


Q ss_pred             cCCCCCCCCch---hhhhcC-CCCCEEEccccccCCCCc--hHHHHhh-cccCcEEEecCCCCCCCCCch-hhccccC-C
Q 019237          141 ENSNLFSLGSL---EWLSHL-SSLRHLDLSYINLTKSSD--WFQVVAK-LRSLKTLVLRSCALPPINPSF-IWHFNLS-T  211 (344)
Q Consensus       141 s~~~l~~~~~~---~~l~~~-~~L~~L~l~~~~~~~~~~--~~~~l~~-~~~L~~L~l~~~~~~~~~~~~-~~~~~~~-~  211 (344)
                      ++|.+......   ..+..+ ++|++|++++|.+.....  +...+.. .++|++|++++|.+.+..... ...+... +
T Consensus        88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~  167 (362)
T 3goz_A           88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA  167 (362)
T ss_dssp             CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred             cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence            99999865431   124445 899999999999877643  2233444 369999999999988654321 1222333 4


Q ss_pred             cccEEEcCCCCCCCCCCcchhh---hcc-CCccEEEccCCcCcCC----chHhhhc-CCCCCEEEccCCccCCCcc----
Q 019237          212 SIETLDLSDNNLPSSSVYPWLF---NLS-RNILVLDLAFNSLRGS----IPEAFQH-MVSLKSLHLTDNELEGGIP----  278 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~---~~~-~~L~~L~ls~n~l~~~----~~~~~~~-~~~L~~L~l~~n~~~~~~~----  278 (344)
                      +|++|++++|.+.+ ..+..+.   ... ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..+    
T Consensus       168 ~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  246 (362)
T 3goz_A          168 NVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK  246 (362)
T ss_dssp             TCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred             cccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence            99999999999954 2222222   223 4899999999999863    5556665 4599999999999987544    


Q ss_pred             ccccCCCCCCEEeCCCCcCccccchH-------HhhccC----cccccccccccc
Q 019237          279 KFFGNMCSLNRLFLPHNKLSGELSEM-------IQNLSG----GCTMNSLEGVLE  322 (344)
Q Consensus       279 ~~l~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~----~l~~n~l~~~~~  322 (344)
                      ..+..+++|+.|++++|.+.+..+..       +..+++    ++++|++.+..+
T Consensus       247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            34577899999999999965443332       223333    899999977633

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.6e-20  Score=162.41  Aligned_cols=200  Identities=20%  Similarity=0.147  Sum_probs=166.8

Q ss_pred             ccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcc
Q 019237          105 IGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR  184 (344)
Q Consensus       105 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~  184 (344)
                      ++++++++.++++++.+. .+|..+.  +++++|++++|.+..... ..+..+++|++|++++|.+.....    ...++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~   77 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQV----DGTLP   77 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEEC----CSCCT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccC----CCCCC
Confidence            567899999999987765 4565554  689999999999986543 678899999999999999887654    26889


Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      +|+.|++++|.+...+.    .+..+++|++|++++|.+  ..+++..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        78 ~L~~L~Ls~N~l~~l~~----~~~~l~~L~~L~l~~N~l--~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           78 VLGTLDLSHNQLQSLPL----LGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             TCCEEECCSSCCSSCCC----CTTTCTTCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cCCEEECCCCcCCcCch----hhccCCCCCEEECCCCcC--cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            99999999999987654    345668999999999999  456666667777999999999999977777888999999


Q ss_pred             EEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccc
Q 019237          265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEG  319 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~  319 (344)
                      .|++++|++++..+..+..+++|+.|+|++|.++ .+|..+.....    ++++|++..
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            9999999999655566788999999999999999 67777776555    788888754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.4e-21  Score=162.08  Aligned_cols=197  Identities=20%  Similarity=0.221  Sum_probs=156.2

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCc-CCCcCCcccccCCCCcEEEccC-CCCCCCCchhhhhcCCCCCE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGT-SLLKVPRPFQYLSGLVYLRLEN-SNLFSLGSLEWLSHLSSLRH  162 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~~~~~~~l~~L~~L~ls~-~~l~~~~~~~~l~~~~~L~~  162 (344)
                      +|++|++++|.++.. .+..+..+++|++|++++|. +....+..|..+++|++|++++ |.+...+. ..+..+++|++
T Consensus        32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCE
T ss_pred             cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCE
Confidence            789999999998874 44478889999999999887 5555556788899999999998 88876553 45778899999


Q ss_pred             EEccccccCCCCchHHHHhhcccCc---EEEecCC-CCCCCCCchhhccccCCccc-EEEcCCCCCCCCCCcchhhhccC
Q 019237          163 LDLSYINLTKSSDWFQVVAKLRSLK---TLVLRSC-ALPPINPSFIWHFNLSTSIE-TLDLSDNNLPSSSVYPWLFNLSR  237 (344)
Q Consensus       163 L~l~~~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~  237 (344)
                      |++++|.+...+.    +..+++|+   +|++++| .+...++.   .+..+++|+ +|++++|.+  ..++...+.. +
T Consensus       110 L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l--~~i~~~~~~~-~  179 (239)
T 2xwt_C          110 LGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGF--TSVQGYAFNG-T  179 (239)
T ss_dssp             EEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCC--CEECTTTTTT-C
T ss_pred             EeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCC--cccCHhhcCC-C
Confidence            9999998887653    56677777   9999999 87776542   356678999 999999998  3555555555 5


Q ss_pred             CccEEEccCCc-CcCCchHhhhcC-CCCCEEEccCCccCCCccccccCCCCCCEEeCCCCc
Q 019237          238 NILVLDLAFNS-LRGSIPEAFQHM-VSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK  296 (344)
Q Consensus       238 ~L~~L~ls~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~  296 (344)
                      +|++|++++|. +++..+..+..+ ++|+.|++++|+++ .+|..  .+++|+.|+++++.
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            89999999995 886667788888 99999999999998 45554  57899999998863

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=5.7e-22  Score=176.61  Aligned_cols=239  Identities=20%  Similarity=0.198  Sum_probs=182.2

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ..++.++++++        .+.+..+. +..+++|++|++++|.++...++..+..+++|++|++++|.+.+..+..+..
T Consensus        70 ~~l~~L~l~~n--------~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~  140 (336)
T 2ast_B           70 QGVIAFRCPRS--------FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK  140 (336)
T ss_dssp             TTCSEEECTTC--------EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred             ccceEEEcCCc--------cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence            67899999998        66665554 6689999999999999865446777889999999999999988788888889


Q ss_pred             CCCCcEEEccCC-CCCCCCchhhhhcCCCCCEEEcccc-ccCCCCchHHHHhhcc-cCcEEEecCCC--CCCCCCchhhc
Q 019237          132 LSGLVYLRLENS-NLFSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKLR-SLKTLVLRSCA--LPPINPSFIWH  206 (344)
Q Consensus       132 l~~L~~L~ls~~-~l~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~~~~~~~~~~  206 (344)
                      +++|++|++++| .++....+..+..+++|++|++++| .+... .+...+..++ +|++|++++|.  ++..  .....
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~l~~~  217 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKS--DLSTL  217 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHH--HHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-HHHHHHHhcccCCCEEEeCCCcccCCHH--HHHHH
Confidence            999999999999 5664334456888999999999999 76643 2345678899 99999999994  4321  11234


Q ss_pred             cccCCcccEEEcCCCC-CCCCCCcchhhhccCCccEEEccCCc-CcCCchHhhhcCCCCCEEEccCCccCCCccccccCC
Q 019237          207 FNLSTSIETLDLSDNN-LPSSSVYPWLFNLSRNILVLDLAFNS-LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNM  284 (344)
Q Consensus       207 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l  284 (344)
                      +..+++|++|++++|. +++ ..+..+ ...++|++|++++|. ++......+..+++|+.|++++| ++......+.  
T Consensus       218 ~~~~~~L~~L~l~~~~~l~~-~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--  292 (336)
T 2ast_B          218 VRRCPNLVHLDLSDSVMLKN-DCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--  292 (336)
T ss_dssp             HHHCTTCSEEECTTCTTCCG-GGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--
T ss_pred             HhhCCCCCEEeCCCCCcCCH-HHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--
Confidence            4567999999999998 543 444444 445799999999995 44333346788999999999999 5543323232  


Q ss_pred             CCCCEEeCCCCcCccccchHHhh
Q 019237          285 CSLNRLFLPHNKLSGELSEMIQN  307 (344)
Q Consensus       285 ~~L~~L~L~~n~l~~~~~~~~~~  307 (344)
                      ..++.|++++|.+++..|..+..
T Consensus       293 ~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          293 EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             hhCcceEEecccCccccCCcccc
Confidence            23666668999999988876554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.5e-19  Score=158.98  Aligned_cols=191  Identities=20%  Similarity=0.291  Sum_probs=161.0

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      .+++.|+++++        .+.. ++ .+..+++|++|++++|.++.  ++. +..+++|++|++++|.+...  ..+..
T Consensus        41 ~~L~~L~l~~~--------~i~~-l~-~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~  105 (308)
T 1h6u_A           41 DGITTLSAFGT--------GVTT-IE-GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNV--SAIAG  105 (308)
T ss_dssp             HTCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCC--GGGTT
T ss_pred             CCcCEEEeeCC--------CccC-ch-hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCc--hhhcC
Confidence            57999999998        4442 34 48889999999999999987  445 88999999999999987653  36889


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++|++|++++|.+...+   .+..+++|++|++++|.+.....    +..+++|+.|++++|.+.+..+     +..++
T Consensus       106 l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~-----l~~l~  173 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP-----LANLS  173 (308)
T ss_dssp             CTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG-----GTTCT
T ss_pred             CCCCCEEECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh-----hcCCC
Confidence            999999999999998654   38899999999999999987753    7889999999999999887543     56679


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG  275 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  275 (344)
                      +|+.|++++|.+.  .+++  ...+++|++|++++|.+++..+  +..+++|+.|++++|++++
T Consensus       174 ~L~~L~l~~n~l~--~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          174 KLTTLKADDNKIS--DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TCCEEECCSSCCC--CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCEEECCCCccC--cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            9999999999994  3443  4556799999999999995543  7889999999999999984

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=3.4e-20  Score=157.11  Aligned_cols=199  Identities=19%  Similarity=0.197  Sum_probs=162.1

Q ss_pred             CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCC-CCCCCccccccCCCCCcEEEccC-CcCCCcCCcc
Q 019237           51 TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNH-FGGSPVPEFIGSLSRLRYLNLSC-GTSLLKVPRP  128 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~  128 (344)
                      ...++.++++++        .+++..+..+..+++|++|++++|. ++.. .+..+..+++|++|++++ |.+....+..
T Consensus        30 ~~~l~~L~l~~n--------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           30 PPSTQTLKLIET--------HLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CTTCCEEEEESC--------CCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             CCcccEEEEeCC--------cceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            357899999998        6776666689999999999999997 7763 345788999999999998 8888777788


Q ss_pred             cccCCCCcEEEccCCCCCCCCchhhhhcCCCCC---EEEcccc-ccCCCCchHHHHhhcccCc-EEEecCCCCCCCCCch
Q 019237          129 FQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR---HLDLSYI-NLTKSSDWFQVVAKLRSLK-TLVLRSCALPPINPSF  203 (344)
Q Consensus       129 ~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~  203 (344)
                      |..+++|++|++++|.+...+.   +..+++|+   +|++++| .+.....  ..+..+++|+ +|++++|.+...+.  
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~~i~~--  173 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFTSVQG--  173 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCCEECT--
T ss_pred             hCCCCCCCEEeCCCCCCccccc---cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCcccCH--
Confidence            8999999999999999987653   67778887   9999999 7776653  3578899999 99999999886554  


Q ss_pred             hhccccCCcccEEEcCCCC-CCCCCCcchhhhcc-CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237          204 IWHFNLSTSIETLDLSDNN-LPSSSVYPWLFNLS-RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE  272 (344)
Q Consensus       204 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  272 (344)
                       ..+.. ++|+.|++++|. +  ..+++..+... ++|+.|++++|.++ .+|..  .+++|+.|+++++.
T Consensus       174 -~~~~~-~~L~~L~L~~n~~l--~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          174 -YAFNG-TKLDAVYLNKNKYL--TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             -TTTTT-CEEEEEECTTCTTC--CEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             -hhcCC-CCCCEEEcCCCCCc--ccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence             23455 799999999995 8  35556666666 79999999999998 44443  57889999998763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=7.1e-21  Score=179.75  Aligned_cols=208  Identities=21%  Similarity=0.271  Sum_probs=128.0

Q ss_pred             CCCCCCCCCCCCc-----cccce-EEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCc
Q 019237           28 SSWGRDNDKRDCC-----KWRGV-RCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPV  101 (344)
Q Consensus        28 ~~w~~~~~~~~~c-----~~~~~-~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  101 (344)
                      ..|.   ...++|     .|.++ .|.  .++++.|+++++        .+.+ +|..+  +++|++|++++|.++.  +
T Consensus        34 ~~W~---~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n--------~L~~-lp~~l--~~~L~~L~Ls~N~l~~--i   95 (571)
T 3cvr_A           34 DKWE---KQALPGENRNEAVSLLKECL--INQFSELQLNRL--------NLSS-LPDNL--PPQITVLEITQNALIS--L   95 (571)
T ss_dssp             HHHH---TTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSS--------CCSC-CCSCC--CTTCSEEECCSSCCSC--C
T ss_pred             HHHh---ccCCccccccchhhhccccc--cCCccEEEeCCC--------CCCc-cCHhH--cCCCCEEECcCCCCcc--c
Confidence            4665   344556     68888 674  246889999988        5554 55544  3678999999998875  5


Q ss_pred             cccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHh
Q 019237          102 PEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVA  181 (344)
Q Consensus       102 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~  181 (344)
                      |   ..+++|++|++++|.+.+ +|. +..  +|++|++++|.++..+.     .+++|++|++++|.+...+.      
T Consensus        96 p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~------  157 (571)
T 3cvr_A           96 P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE------  157 (571)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC------
T ss_pred             c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC-----cCccccEEeCCCCccCcCCC------
Confidence            5   447888888888887776 555 554  78888888887776442     45667777776666655332      


Q ss_pred             hcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCC
Q 019237          182 KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV  261 (344)
Q Consensus       182 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~  261 (344)
                      .+++|++|++++|.+.+.+.     +.  ++|++|++++|                          .++ .+|. +..  
T Consensus       158 ~l~~L~~L~Ls~N~L~~lp~-----l~--~~L~~L~Ls~N--------------------------~L~-~lp~-~~~--  200 (571)
T 3cvr_A          158 LPTSLEVLSVRNNQLTFLPE-----LP--ESLEALDVSTN--------------------------LLE-SLPA-VPV--  200 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCC-----CC--TTCCEEECCSS--------------------------CCS-SCCC-CC---
T ss_pred             cCCCcCEEECCCCCCCCcch-----hh--CCCCEEECcCC--------------------------CCC-chhh-HHH--
Confidence            34455555555555544322     11  44455555555                          444 3333 221  


Q ss_pred             CC-------CEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhcc
Q 019237          262 SL-------KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS  309 (344)
Q Consensus       262 ~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  309 (344)
                      +|       +.|++++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..+.
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            33       66666666666 4555555566666666666666666666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=2e-19  Score=169.93  Aligned_cols=181  Identities=23%  Similarity=0.254  Sum_probs=128.4

Q ss_pred             CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEE
Q 019237          110 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL  189 (344)
Q Consensus       110 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L  189 (344)
                      +|+.|++++|.+.+ +|..+.  ++|++|++++|.+...+     ..+++|++|++++|.+...+.    +..  +|+.|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~----l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPE----LPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC----CCT--TCCEE
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcch----hhc--CCCEE
Confidence            56666666555544 444332  55666666666666433     235667777777776665432    222  78888


Q ss_pred             EecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEcc
Q 019237          190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLT  269 (344)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~  269 (344)
                      ++++|.+.+.+.       .+++|+.|++++|.+.  .++.    .+++|+.|++++|.+++ +|. +.  ++|+.|+++
T Consensus       126 ~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~--~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          126 DVDNNQLTMLPE-------LPALLEYINADNNQLT--MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             ECCSSCCSCCCC-------CCTTCCEEECCSSCCS--CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             ECCCCcCCCCCC-------cCccccEEeCCCCccC--cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            888887777443       3478999999999884  3443    45689999999999985 666 55  899999999


Q ss_pred             CCccCCCccccccCCCCC-------CEEeCCCCcCccccchHHhhccC----cccccccccccccccc
Q 019237          270 DNELEGGIPKFFGNMCSL-------NRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKS  326 (344)
Q Consensus       270 ~n~~~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~  326 (344)
                      +|.++ .+|. +..  +|       +.|+|++|.++ .+|..+..+++    ++++|++++.+|....
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            99999 6777 554  77       99999999999 67888888777    9999999998875433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=2.2e-18  Score=147.03  Aligned_cols=176  Identities=24%  Similarity=0.239  Sum_probs=135.6

Q ss_pred             CCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237          134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI  213 (344)
Q Consensus       134 ~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  213 (344)
                      ..++++++++.++..+.  .  -.+++++|++++|.+.....  ..+..+++|++|++++|.+.+..+.   .+..+++|
T Consensus        15 ~~~~l~~~~~~l~~~p~--~--~~~~l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L   85 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPS--G--IPADTEKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQTLSAG---VFDDLTEL   85 (251)
T ss_dssp             GGTEEECTTCCCSSCCS--C--CCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTC
T ss_pred             CCeEEecCCCCccccCC--C--CCCCCCEEEccCCCcCccCH--hHhcCcccCCEEECCCCcCCccCHh---HhccCCcC
Confidence            45566666666665542  1  12467777777777666543  3466777888888888877776542   35566889


Q ss_pred             cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237          214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP  293 (344)
Q Consensus       214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~  293 (344)
                      ++|++++|.+  ..+++..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+|+
T Consensus        86 ~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           86 GTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             CEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCcc--cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            9999999988  45566666677799999999999997777778999999999999999996666679999999999999


Q ss_pred             CCcCccccchHHhhccC----cccccccccc
Q 019237          294 HNKLSGELSEMIQNLSG----GCTMNSLEGV  320 (344)
Q Consensus       294 ~n~l~~~~~~~~~~l~~----~l~~n~l~~~  320 (344)
                      +|.+++..+..+..+++    ++++|++.+.
T Consensus       164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999777777777666    8999999876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=2.7e-18  Score=142.19  Aligned_cols=66  Identities=23%  Similarity=0.210  Sum_probs=31.7

Q ss_pred             CccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      +|++|++++|.+++..+..+..+++|+.|++++|.+.+       .+++|+.|+++.|.++|.+|..++.+..
T Consensus       125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            44444444444443333334444555555555554432       2344555555555555555555554444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=2e-18  Score=143.05  Aligned_cols=133  Identities=28%  Similarity=0.298  Sum_probs=84.4

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237           84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L  163 (344)
                      ++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...+. ..+..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEE
Confidence            4788999999988764 45567788888888888888776666666778888888888888775543 345566677777


Q ss_pred             EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237          164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL  223 (344)
Q Consensus       164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  223 (344)
                      ++++|.+.....  ..+..+++|++|++++|.+.+.++.   .+..+++|++|++++|.+
T Consensus       106 ~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          106 ALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             ECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCB
T ss_pred             EcCCCcCcccCH--hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCCe
Confidence            777766655432  2244455555555555555443321   123334444444444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=5.9e-20  Score=175.92  Aligned_cols=84  Identities=11%  Similarity=0.012  Sum_probs=41.9

Q ss_pred             cCCccEEEccCCc--CcCCchHhh-hcCCCCCEEEccCCccCC-CccccccCCCCCCEEeCCCCcCccccch-HHhhccC
Q 019237          236 SRNILVLDLAFNS--LRGSIPEAF-QHMVSLKSLHLTDNELEG-GIPKFFGNMCSLNRLFLPHNKLSGELSE-MIQNLSG  310 (344)
Q Consensus       236 ~~~L~~L~ls~n~--l~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~  310 (344)
                      +++|++|++++|.  +++..+..+ ..+++|+.|++++|.+++ .++..+.++++|+.|+|++|.+++.... ....+++
T Consensus       435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  514 (592)
T 3ogk_B          435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS  514 (592)
T ss_dssp             CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred             CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence            4455555554432  333323222 235566666666666554 2334445566666666666666544222 2223333


Q ss_pred             ----ccccccccc
Q 019237          311 ----GCTMNSLEG  319 (344)
Q Consensus       311 ----~l~~n~l~~  319 (344)
                          ++++|++++
T Consensus       515 L~~L~ls~n~it~  527 (592)
T 3ogk_B          515 LRYLWVQGYRASM  527 (592)
T ss_dssp             CCEEEEESCBCCT
T ss_pred             cCeeECcCCcCCH
Confidence                566666544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1e-18  Score=156.49  Aligned_cols=230  Identities=18%  Similarity=0.175  Sum_probs=162.0

Q ss_pred             ceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC
Q 019237           44 GVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL  123 (344)
Q Consensus        44 ~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~  123 (344)
                      -.+|..     ++++.+++        .++ .+|..+  .+++++|++++|.++.. .+..|..+++|++|+|++|.+.+
T Consensus         6 ~C~C~~-----~~v~C~~~--------~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~   68 (350)
T 4ay9_X            6 ICHCSN-----RVFLCQES--------KVT-EIPSDL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLE   68 (350)
T ss_dssp             SSEEET-----TEEEEEST--------TCC-SCCTTC--CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCC
T ss_pred             ccEeeC-----CEEEecCC--------CCC-ccCcCc--CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCC
Confidence            356742     24566665        454 466655  35899999999999873 33468999999999999999877


Q ss_pred             cCC-cccccCCCCcE-EEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecC-CCCCCCC
Q 019237          124 KVP-RPFQYLSGLVY-LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS-CALPPIN  200 (344)
Q Consensus       124 ~~~-~~~~~l~~L~~-L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~  200 (344)
                      .+| ..|.+++++++ +.+..|.+...+. ..+..+++|++|++++|.+.....  .......++..|++.+ +.+...+
T Consensus        69 ~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~  145 (350)
T 4ay9_X           69 VIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIE  145 (350)
T ss_dssp             EECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEEC
T ss_pred             ccChhHhhcchhhhhhhcccCCcccccCc-hhhhhccccccccccccccccCCc--hhhcccchhhhhhhcccccccccc
Confidence            665 46788888765 5666788876543 567889999999999999887754  2344556777888865 4455444


Q ss_pred             Cchhhcccc-CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccC-CcCcCCchHhhhcCCCCCEEEccCCccCCCcc
Q 019237          201 PSFIWHFNL-STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAF-NSLRGSIPEAFQHMVSLKSLHLTDNELEGGIP  278 (344)
Q Consensus       201 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  278 (344)
                      ..   .+.. ...++.|++++|.+  ..+++.++... +|+++++++ |.++...+..|..+++|+.|++++|+++ .+|
T Consensus       146 ~~---~f~~~~~~l~~L~L~~N~i--~~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp  218 (350)
T 4ay9_X          146 RN---SFVGLSFESVILWLNKNGI--QEIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP  218 (350)
T ss_dssp             TT---SSTTSBSSCEEEECCSSCC--CEECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCC
T ss_pred             cc---chhhcchhhhhhccccccc--cCCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccC
Confidence            31   2333 24688999999999  45666655554 799999975 5666444567889999999999999998 455


Q ss_pred             ccccCCCCCCEEeCCCCcCccccc
Q 019237          279 KFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       279 ~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                      ..  .+.+|+.|.+.++.--..+|
T Consensus       219 ~~--~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          219 SY--GLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             SS--SCTTCCEEECTTCTTCCCCC
T ss_pred             hh--hhccchHhhhccCCCcCcCC
Confidence            42  24566677766654333555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=3e-18  Score=153.49  Aligned_cols=235  Identities=22%  Similarity=0.262  Sum_probs=176.3

Q ss_pred             CccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcc-ccccCC
Q 019237           39 CCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVP-EFIGSL  108 (344)
Q Consensus        39 ~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l  108 (344)
                      .|.|..+.|...         ...++.|+|++|        .++...+.+|.++++|++|+|++|.+.+. ++ ..|..+
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N--------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L   78 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLT--------KLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNL   78 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESC--------CCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSC
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCC--------cCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcc
Confidence            378888999532         246889999998        67654455799999999999999998664 44 467888


Q ss_pred             CCCcE-EEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEcccc-ccCCCCchHHHHhhc-cc
Q 019237          109 SRLRY-LNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKL-RS  185 (344)
Q Consensus       109 ~~L~~-L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~l~~~-~~  185 (344)
                      +++++ +.+..|++....|..|..+++|++|++++|.+...+. ..+....++..+++.++ .+.....  ..+..+ ..
T Consensus        79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~  155 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFE  155 (350)
T ss_dssp             TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECT--TSSTTSBSS
T ss_pred             hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc-hhhcccchhhhhhhccccccccccc--cchhhcchh
Confidence            88876 5556677877778889999999999999999987664 33445667888888664 4443332  233443 46


Q ss_pred             CcEEEecCCCCCCCCCchhhccccCCcccEEEcCC-CCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSD-NNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       186 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      ++.|++++|.+...+..   .+.. .+|+.+++.+ |.+  ..++...+..+++|+.|++++|+++ .+|..  .+.+|+
T Consensus       156 l~~L~L~~N~i~~i~~~---~f~~-~~L~~l~l~~~n~l--~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~  226 (350)
T 4ay9_X          156 SVILWLNKNGIQEIHNS---AFNG-TQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLK  226 (350)
T ss_dssp             CEEEECCSSCCCEECTT---SSTT-EEEEEEECTTCTTC--CCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCC
T ss_pred             hhhhccccccccCCChh---hccc-cchhHHhhccCCcc--cCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccch
Confidence            88999999999876652   3433 7899999986 555  4777777777889999999999999 55542  356788


Q ss_pred             EEEccCCccCCCccccccCCCCCCEEeCCCC
Q 019237          265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHN  295 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n  295 (344)
                      .|.+.++.--+.+|. +..+++|+.+++.++
T Consensus       227 ~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          227 KLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             EEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             HhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            888777754447774 788999999999864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=4e-18  Score=148.63  Aligned_cols=173  Identities=22%  Similarity=0.270  Sum_probs=116.2

Q ss_pred             hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237           80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS  159 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~  159 (344)
                      +..+++|+.|++++|.+..  + +.+..+++|++|++++|.+.+..+  +..+++|++|++++|.+...   ..+..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~--~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~---~~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL---SSLKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG---GGGTTCTT
T ss_pred             hhhcCcccEEEccCCCccc--C-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC---hhhccCCC
Confidence            3456677888888877765  3 236667778888888777665443  67777788888887777653   33667777


Q ss_pred             CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237          160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI  239 (344)
Q Consensus       160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  239 (344)
                      |++|++++|.+....    .+..+++|+.|++++|.+.+..     .+..+++|++|++++|.+.+  +++  ...+++|
T Consensus       114 L~~L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~--~~~--l~~l~~L  180 (291)
T 1h6t_A          114 LKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISD--IVP--LAGLTKL  180 (291)
T ss_dssp             CCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCC--CGG--GTTCTTC
T ss_pred             CCEEECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCcccc--chh--hcCCCcc
Confidence            777777777776642    4566777777777777776641     34555777777777777732  333  3444577


Q ss_pred             cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237          240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG  275 (344)
Q Consensus       240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  275 (344)
                      ++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus       181 ~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            777777777763 33 26667777777777777664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7.5e-18  Score=146.87  Aligned_cols=190  Identities=19%  Similarity=0.249  Sum_probs=154.7

Q ss_pred             CCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEc
Q 019237           86 LRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDL  165 (344)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l  165 (344)
                      +..+.+..+.+...   ..+..+++|+.|++++|.+... + .+..+++|++|++++|.+...+.   +..+++|++|++
T Consensus        26 ~~~~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l   97 (291)
T 1h6t_A           26 TIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHTTCSCTTSE---ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred             HHHHHhcCCCcccc---cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEEC
Confidence            44455666666542   2235689999999998877654 3 48889999999999999987652   889999999999


Q ss_pred             cccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEcc
Q 019237          166 SYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLA  245 (344)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls  245 (344)
                      ++|.+....    .+..+++|++|++++|.+.+..     .+..+++|++|++++|.+.+  + + ....+++|++|+++
T Consensus        98 ~~n~l~~~~----~l~~l~~L~~L~L~~n~i~~~~-----~l~~l~~L~~L~l~~n~l~~--~-~-~l~~l~~L~~L~L~  164 (291)
T 1h6t_A           98 DENKVKDLS----SLKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITD--I-T-VLSRLTKLDTLSLE  164 (291)
T ss_dssp             CSSCCCCGG----GGTTCTTCCEEECTTSCCCCCG-----GGGGCTTCCEEECCSSCCCC--C-G-GGGGCTTCSEEECC
T ss_pred             CCCcCCCCh----hhccCCCCCEEECCCCcCCCCh-----hhcCCCCCCEEEccCCcCCc--c-h-hhccCCCCCEEEcc
Confidence            999988753    4789999999999999988753     35567999999999999944  3 3 34556699999999


Q ss_pred             CCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccc
Q 019237          246 FNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE  300 (344)
Q Consensus       246 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  300 (344)
                      +|.+++..+  +..+++|+.|++++|.++ .++. +..+++|+.|++++|.++..
T Consensus       165 ~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          165 DNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             CCccccchh--hcCCCccCEEECCCCcCC-CChh-hccCCCCCEEECcCCcccCC
Confidence            999996555  889999999999999998 4554 88999999999999998754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1e-17  Score=159.79  Aligned_cols=173  Identities=22%  Similarity=0.261  Sum_probs=127.6

Q ss_pred             hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237           80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS  159 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~  159 (344)
                      +..++.|+.|++++|.+..  ++ .+..+++|+.|+|++|.+.+..+  +..+++|++|+|++|.+...+   .+..+++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS---SLKDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT---TSTTCTT
T ss_pred             hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh---hhccCCC
Confidence            4567788888888888765  33 46778888888888887766544  777888888888888877543   4677888


Q ss_pred             CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237          160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI  239 (344)
Q Consensus       160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  239 (344)
                      |++|+|++|.+....    .+..+++|+.|++++|.+.+.     ..+..+++|+.|++++|.+.+  +++  ...+++|
T Consensus       111 L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~--~~~--l~~l~~L  177 (605)
T 1m9s_A          111 LKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISD--IVP--LAGLTKL  177 (605)
T ss_dssp             CCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCCC--CGG--GTTCTTC
T ss_pred             CCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcCCC--chh--hccCCCC
Confidence            888888888877653    467788888888888887765     235566788888888888743  333  4455678


Q ss_pred             cEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCC
Q 019237          240 LVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEG  275 (344)
Q Consensus       240 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  275 (344)
                      +.|+|++|.+++ ++ .+..+++|+.|+|++|.+.+
T Consensus       178 ~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          178 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred             CEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence            888888888874 33 47778888888888888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=1.8e-19  Score=172.51  Aligned_cols=129  Identities=9%  Similarity=0.023  Sum_probs=73.5

Q ss_pred             CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEcc----CCcCcCC-----chHhhhcCCCCCEEEccCCc--cCCCcc
Q 019237          210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLA----FNSLRGS-----IPEAFQHMVSLKSLHLTDNE--LEGGIP  278 (344)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls----~n~l~~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~  278 (344)
                      +++|++|+++.+.+++ ..+..+...+++|++|+++    .+.+++.     ++..+..+++|++|++++|.  +++..+
T Consensus       377 ~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          377 CQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             CTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             CccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            4566666665555543 3333344445567777775    4455542     34445667777777776543  443333


Q ss_pred             ccc-cCCCCCCEEeCCCCcCcccc-chHHhhccC----cccccccccccccccccccccccCCCCcceEecC
Q 019237          279 KFF-GNMCSLNRLFLPHNKLSGEL-SEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIAY  344 (344)
Q Consensus       279 ~~l-~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~~  344 (344)
                      ..+ ..+++|+.|+|++|.+++.. +..+..+++    ++++|++++....     .....+++|+.|++++
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA-----AAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH-----HHHHHCSSCCEEEEES
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH-----HHHHhcCccCeeECcC
Confidence            333 33678888888888877633 333344443    7888877543221     1223678888888763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.4e-17  Score=139.94  Aligned_cols=165  Identities=22%  Similarity=0.218  Sum_probs=124.8

Q ss_pred             CCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237           27 LSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG  106 (344)
Q Consensus        27 ~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  106 (344)
                      ...|.   .+...|.|.++.|...                    .+ ..+|..+.  ++|++|++++|.+... .+..+.
T Consensus         9 ~~~~~---~~~~~Cs~~~v~c~~~--------------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~   61 (229)
T 3e6j_A            9 HSAAC---PSQCSCSGTTVDCRSK--------------------RH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVFD   61 (229)
T ss_dssp             --CCC---CTTCEEETTEEECTTS--------------------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTT
T ss_pred             hhccC---CCCCEEeCCEeEccCC--------------------Cc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHhh
Confidence            34555   5788999999999531                    11 13333222  6788999999988875 677788


Q ss_pred             CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC
Q 019237          107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL  186 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L  186 (344)
                      .+++|++|++++|.+....+..|..+++|++|++++|.++..+. ..+..+++|++|++++|.+...+.   .+..+++|
T Consensus        62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L  137 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTELPR---GIERLTHL  137 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSCCT---TGGGCTTC
T ss_pred             CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccccCc---ccccCCCC
Confidence            88999999999888866666667888899999999998886653 456788899999999998886643   56888899


Q ss_pred             cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCC
Q 019237          187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPS  225 (344)
Q Consensus       187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  225 (344)
                      ++|++++|.+...+.   ..+..+++|+.|++++|.+..
T Consensus       138 ~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          138 THLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSCBCT
T ss_pred             CEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCCccC
Confidence            999999998887664   245666889999999998843

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.1e-17  Score=157.55  Aligned_cols=191  Identities=19%  Similarity=0.252  Sum_probs=157.4

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      .+..+.+..+.+...  . .+..+++|+.|++++|.+... + .+..+++|++|+|++|.+...+.   +..+++|++|+
T Consensus        22 ~l~~l~l~~~~i~~~--~-~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDA--V-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHTTCSCTTSE--E-CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEE
T ss_pred             HHHHHhccCCCcccc--c-chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEE
Confidence            455566777766542  2 245789999999998887643 3 58899999999999999986653   88999999999


Q ss_pred             ccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEc
Q 019237          165 LSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL  244 (344)
Q Consensus       165 l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  244 (344)
                      |++|.+....    .+..+++|+.|++++|.+.+.+     .+..+++|+.|++++|.+.+  + + .+..+++|+.|+|
T Consensus        94 Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~--l-~-~l~~l~~L~~L~L  160 (605)
T 1m9s_A           94 LDENKIKDLS----SLKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITD--I-T-VLSRLTKLDTLSL  160 (605)
T ss_dssp             CCSSCCCCCT----TSTTCTTCCEEECTTSCCCCCG-----GGGGCTTCSEEECCSSCCCC--C-G-GGGSCTTCSEEEC
T ss_pred             CcCCCCCCCh----hhccCCCCCEEEecCCCCCCCc-----cccCCCccCEEECCCCccCC--c-h-hhcccCCCCEEEC
Confidence            9999998764    5788999999999999998753     35667999999999999954  3 3 3455679999999


Q ss_pred             cCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccc
Q 019237          245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE  300 (344)
Q Consensus       245 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  300 (344)
                      ++|.+++..|  +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+.
T Consensus       161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             cCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            9999997666  8899999999999999984 44 588999999999999999865

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=4.8e-18  Score=165.80  Aligned_cols=263  Identities=18%  Similarity=0.116  Sum_probs=117.4

Q ss_pred             CCCHHHHHHHHHhHhhc-cccCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCcccccCcccccccchhhhc
Q 019237            4 RCIDEEREALLTFKQSM-VDKYGVLSSWGRDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENARGKVLKGTISPALLK   82 (344)
Q Consensus         4 ~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~~~c~~~~~~c~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~   82 (344)
                      .-.+.+++|+.++..+. +..+..-..|..  ..+....|.+..+.  .++++.++|.++        .+.. ++..+..
T Consensus       128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~n--------~~~~-~~~~~l~  194 (727)
T 4b8c_D          128 SLVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFAN--------GKDE-ANQALLQ  194 (727)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred             hccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeCC--------CCCc-chhhHhh
Confidence            34456789999999888 344444456753  45556788887774  367899999887        3333 3333322


Q ss_pred             CCCCCEEe-----CCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcC
Q 019237           83 LHDLRHLD-----LSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHL  157 (344)
Q Consensus        83 l~~L~~L~-----l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~  157 (344)
                      ...|..+.     +..|.+..  .+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+...+  ..+..+
T Consensus       195 ~l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l  269 (727)
T 4b8c_D          195 HKKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELP--AEIKNL  269 (727)
T ss_dssp             -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCC--GGGGGG
T ss_pred             cCccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccC--hhhhCC
Confidence            22333322     22233321  4566778888999999988776 67777778888999999999888554  667888


Q ss_pred             CCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccC
Q 019237          158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR  237 (344)
Q Consensus       158 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  237 (344)
                      ++|++|+|++|.+...+.   .+..+++|+.|+|++|.+...+.    .+..+++|++|++++|.+.+ .++..+.....
T Consensus       270 ~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~  341 (727)
T 4b8c_D          270 SNLRVLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEK-QFLKILTEKSV  341 (727)
T ss_dssp             TTCCEEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCS-HHHHHHHHHHH
T ss_pred             CCCCEEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCC-CChHHHhhcch
Confidence            899999999988885543   67888888889988888876554    25666888888888888843 33332222211


Q ss_pred             CccEEEccCCcCcCCchHhhhcCCCCCEEEccCC--------ccCCCccccccCCCCCCEEeCCCCcCc
Q 019237          238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDN--------ELEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n--------~~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      ....+++++|.+++.+|..      |+.|+++.|        .+.+..+..+..+..+....++.|-+.
T Consensus       342 ~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          342 TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred             hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            2334678888888766643      445556555        222223333445556666667777664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.71  E-value=2.4e-18  Score=164.83  Aligned_cols=127  Identities=10%  Similarity=0.062  Sum_probs=60.1

Q ss_pred             CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEcc--C----CcCcC-----CchHhhhcCCCCCEEEccCCccCCCcc
Q 019237          210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLA--F----NSLRG-----SIPEAFQHMVSLKSLHLTDNELEGGIP  278 (344)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls--~----n~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~  278 (344)
                      +++|++|.+..+.+++ .....+...+++|++|+++  +    +.+++     .++..+..+++|+.|++++ .+++..+
T Consensus       371 ~~~L~~L~~~~~~l~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTN-AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             CTTCCEEEEEESCCCH-HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             chhHHHHHHhcCCcCH-HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            3455555554444432 2222333334566666666  2    33431     1222345556666666655 3443333


Q ss_pred             ccccC-CCCCCEEeCCCCcCccccchHH-hhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          279 KFFGN-MCSLNRLFLPHNKLSGELSEMI-QNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       279 ~~l~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      ..+.. +++|+.|+|++|.+++..+..+ ..+++    ++++|.+++...     ......+++|+.|+++
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~-----~~~~~~l~~L~~L~l~  514 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL-----LANASKLETMRSLWMS  514 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH-----HHTGGGGGGSSEEEEE
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH-----HHHHHhCCCCCEEeee
Confidence            33333 5666666666666655544433 22333    666666633221     1122345666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=2.6e-16  Score=131.38  Aligned_cols=158  Identities=20%  Similarity=0.206  Sum_probs=133.3

Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCccc
Q 019237          135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIE  214 (344)
Q Consensus       135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  214 (344)
                      -++++++++.++..+.  .  -.+.+++|++++|.+..... ...+..+++|+.|++++|.+.+..+.   .+..+++|+
T Consensus        13 ~~~l~~s~n~l~~iP~--~--~~~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~---~~~~l~~L~   84 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE--H--IPQYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEG---AFEGASGVN   84 (220)
T ss_dssp             TTEEECCSSCCSSCCS--C--CCTTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCCEECTT---TTTTCTTCC
T ss_pred             CCEeEeCCCCcccCcc--C--CCCCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCCEECHH---HhCCCCCCC
Confidence            4689999999987663  2  24568999999999887632 12478899999999999999876642   466679999


Q ss_pred             EEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCC
Q 019237          215 TLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPH  294 (344)
Q Consensus       215 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~  294 (344)
                      +|++++|.+  ..+++..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|+|++
T Consensus        85 ~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           85 EILLTSNRL--ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             EEECCSSCC--CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCcc--CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            999999999  456676677778999999999999988899999999999999999999987788999999999999999


Q ss_pred             CcCccccc
Q 019237          295 NKLSGELS  302 (344)
Q Consensus       295 n~l~~~~~  302 (344)
                      |.+....+
T Consensus       163 N~l~c~c~  170 (220)
T 2v70_A          163 NPFNCNCY  170 (220)
T ss_dssp             CCEECSGG
T ss_pred             cCCcCCCc
Confidence            99986644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=4.5e-17  Score=139.77  Aligned_cols=171  Identities=18%  Similarity=0.250  Sum_probs=122.7

Q ss_pred             cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      .+..+..++++++.++.  ++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+...+.   +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh---hccCCCCC
Confidence            45567778888888876  44 56778899999999887654 44 67788889999999988886552   77888888


Q ss_pred             EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237          162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV  241 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  241 (344)
                      +|++++|.+.....    +.. ++|+.|++++|.+.+.+     .+..+++|++|++++|.+.+  + +. ...+++|+.
T Consensus        89 ~L~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~Ls~N~i~~--~-~~-l~~l~~L~~  154 (263)
T 1xeu_A           89 ELSVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDTD-----SLIHLKNLEILSIRNNKLKS--I-VM-LGFLSKLEV  154 (263)
T ss_dssp             EEECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBSG-----GGTTCTTCCEEECTTSCCCB--C-GG-GGGCTTCCE
T ss_pred             EEECCCCccCCcCc----ccc-CcccEEEccCCccCCCh-----hhcCcccccEEECCCCcCCC--C-hH-HccCCCCCE
Confidence            88888888877643    122 77888888888777642     24556778888888887733  2 22 344557788


Q ss_pred             EEccCCcCcCCchHhhhcCCCCCEEEccCCccCCC
Q 019237          242 LDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGG  276 (344)
Q Consensus       242 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  276 (344)
                      |++++|.+++.  ..+..+++|+.|++++|.++..
T Consensus       155 L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          155 LDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             EECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             EECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            88888777744  5566777777777777777643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=2.7e-16  Score=131.23  Aligned_cols=158  Identities=22%  Similarity=0.233  Sum_probs=129.6

Q ss_pred             CcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEE
Q 019237          111 LRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV  190 (344)
Q Consensus       111 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~  190 (344)
                      -+.++++++.+. .+|..+.  ..+++|++++|.+........+..+++|++|++++|.+.....  ..+..+++|++|+
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~--~~~~~l~~L~~L~   87 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--GAFEGASGVNEIL   87 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEE
T ss_pred             CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH--HHhCCCCCCCEEE
Confidence            358999977765 4666554  4578999999999876543557899999999999999887653  4678899999999


Q ss_pred             ecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccC
Q 019237          191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTD  270 (344)
Q Consensus       191 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~  270 (344)
                      +++|.+.+.++.   .+..+++|++|++++|.+.  .+.+..+..+++|+.|++++|.+++..|..+..+++|+.|++++
T Consensus        88 Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           88 LTSNRLENVQHK---MFKGLESLKTLMLRSNRIT--CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCSSCCCCCCGG---GGTTCSSCCEEECTTSCCC--CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCCccCccCHh---HhcCCcCCCEEECCCCcCC--eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            999999887753   4667799999999999994  45555566677999999999999987799999999999999999


Q ss_pred             CccCCCcc
Q 019237          271 NELEGGIP  278 (344)
Q Consensus       271 n~~~~~~~  278 (344)
                      |.+....+
T Consensus       163 N~l~c~c~  170 (220)
T 2v70_A          163 NPFNCNCY  170 (220)
T ss_dssp             CCEECSGG
T ss_pred             cCCcCCCc
Confidence            99876443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=2.2e-16  Score=141.87  Aligned_cols=180  Identities=23%  Similarity=0.204  Sum_probs=136.5

Q ss_pred             EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc-CCCCCcEEEccCCcCCCcCCcccccCC
Q 019237           55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQYLS  133 (344)
Q Consensus        55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~  133 (344)
                      +.++++++        .++ .+|..+.  +.++.|++++|.++.. .+..+. .+++|++|++++|.+....+..|..++
T Consensus        21 ~~l~c~~~--------~l~-~iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~   88 (361)
T 2xot_A           21 NILSCSKQ--------QLP-NVPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP   88 (361)
T ss_dssp             TEEECCSS--------CCS-SCCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CEEEeCCC--------CcC-ccCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence            36888887        444 3555443  3689999999999875 455565 899999999999999888888899999


Q ss_pred             CCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237          134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI  213 (344)
Q Consensus       134 ~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  213 (344)
                      +|++|++++|.+...+. ..+..+++|++|++++|.+.....  ..+..+++|+.|++++|.+...+.........+++|
T Consensus        89 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             TCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEECH--HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            99999999999986553 557889999999999999887643  467888999999999999888765432222456889


Q ss_pred             cEEEcCCCCCCCCCCcchhhhccCC--ccEEEccCCcCcC
Q 019237          214 ETLDLSDNNLPSSSVYPWLFNLSRN--ILVLDLAFNSLRG  251 (344)
Q Consensus       214 ~~L~l~~n~l~~~~~~~~~~~~~~~--L~~L~ls~n~l~~  251 (344)
                      +.|++++|.+  ..++...+..++.  ++.|++++|.+..
T Consensus       166 ~~L~L~~N~l--~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          166 MLLDLSSNKL--KKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CEEECCSSCC--CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CEEECCCCCC--CccCHHHhhhccHhhcceEEecCCCccC
Confidence            9999999988  3455444444444  4778888888873

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=2.6e-16  Score=131.31  Aligned_cols=153  Identities=18%  Similarity=0.206  Sum_probs=108.2

Q ss_pred             cEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccE
Q 019237          136 VYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIET  215 (344)
Q Consensus       136 ~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  215 (344)
                      +.++++++.++..+.  .  -.+++++|++++|.+.....  ..+..+++|+.|++++|.+....+   ..+..+++|++
T Consensus        14 ~~v~c~~~~l~~iP~--~--l~~~l~~L~l~~n~i~~i~~--~~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~   84 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT--N--LPETITEIRLEQNTIKVIPP--GAFSPYKKLRRIDLSNNQISELAP---DAFQGLRSLNS   84 (220)
T ss_dssp             TEEECTTSCCSSCCS--S--CCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECCSSCCCEECT---TTTTTCSSCCE
T ss_pred             CEEEcCCCCcCcCCC--c--cCcCCCEEECCCCcCCCcCH--hHhhCCCCCCEEECCCCcCCCcCH---HHhhCCcCCCE
Confidence            445555555554442  1  12456666666666655432  245566677777777777665543   23555678888


Q ss_pred             EEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCC
Q 019237          216 LDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN  295 (344)
Q Consensus       216 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n  295 (344)
                      |++++|.+  ..+++..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|+|++|
T Consensus        85 L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           85 LVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             EECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcC--CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            88888888  4566666666778888999988888777888888899999999999988766667888899999999999


Q ss_pred             cCcc
Q 019237          296 KLSG  299 (344)
Q Consensus       296 ~l~~  299 (344)
                      .+.-
T Consensus       163 ~~~c  166 (220)
T 2v9t_B          163 PFIC  166 (220)
T ss_dssp             CEEC
T ss_pred             CcCC
Confidence            8764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=6.2e-18  Score=161.90  Aligned_cols=243  Identities=13%  Similarity=0.076  Sum_probs=123.8

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhh-cCCCCCEEeCCCC-CCCCCCccccccCCCCCcEEEccCCcCCCcCCccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALL-KLHDLRHLDLSNN-HFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPF  129 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~  129 (344)
                      ++++.|+++++        .+.+..+..+. .+++|++|++++| .++...++..+..+++|++|++++|.+.+..+..+
T Consensus       105 ~~L~~L~L~~~--------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B          105 TWLEEIRLKRM--------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             TTCCEEEEESC--------BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred             CCCCeEEeeCc--------EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence            34666666665        44444444443 4666777777666 33322233333456777777777666544333222


Q ss_pred             ----ccCCCCcEEEccCCC--CCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCC--------
Q 019237          130 ----QYLSGLVYLRLENSN--LFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA--------  195 (344)
Q Consensus       130 ----~~l~~L~~L~ls~~~--l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------  195 (344)
                          ..+++|++|++++|.  +...........+++|++|++++|...  ..+...+..+++|++|++..+.        
T Consensus       177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  254 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVY  254 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred             HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchhhH
Confidence                245567777777665  111111122344577777777766211  1133445556666666644331        


Q ss_pred             ------------------CCCCCCc-hhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcC-CchH
Q 019237          196 ------------------LPPINPS-FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG-SIPE  255 (344)
Q Consensus       196 ------------------~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~  255 (344)
                                        +...... +......+++|++|++++|.+.+ .....+...+++|++|++++| +++ .++.
T Consensus       255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~-~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~  332 (594)
T 2p1m_B          255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-YDLVKLLCQCPKLQRLWVLDY-IEDAGLEV  332 (594)
T ss_dssp             HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH-HHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred             HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH-HHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence                              1111110 01111234678888888877643 223333445567777777776 332 2333


Q ss_pred             hhhcCCCCCEEEccC---------CccCCCccccc-cCCCCCCEEeCCCCcCccccchHHh
Q 019237          256 AFQHMVSLKSLHLTD---------NELEGGIPKFF-GNMCSLNRLFLPHNKLSGELSEMIQ  306 (344)
Q Consensus       256 ~~~~~~~L~~L~l~~---------n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~  306 (344)
                      ....+++|++|++.+         +.+++.....+ ..+++|+.|.++.|.+++..+..+.
T Consensus       333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~  393 (594)
T 2p1m_B          333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA  393 (594)
T ss_dssp             HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred             HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence            334567777777732         33332222222 2366777776666666655544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=1.4e-15  Score=127.77  Aligned_cols=155  Identities=23%  Similarity=0.240  Sum_probs=111.5

Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCccc
Q 019237          135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIE  214 (344)
Q Consensus       135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  214 (344)
                      -+.++.+++.+...+.    .-.++|++|++++|.+.....  ..+..+++|++|++++|.+...+..   .+..+++|+
T Consensus        21 ~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~N~l~~i~~~---~~~~l~~L~   91 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEP--GVFDSLINLKELYLGSNQLGALPVG---VFDSLTQLT   91 (229)
T ss_dssp             TTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred             CCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCH--HHhhCccCCcEEECCCCCCCCcChh---hcccCCCcC
Confidence            4456666666555442    122566777777776666532  3456677777777777777665532   345567888


Q ss_pred             EEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCC
Q 019237          215 TLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPH  294 (344)
Q Consensus       215 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~  294 (344)
                      +|++++|.+  ..+++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus        92 ~L~Ls~N~l--~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           92 VLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             EEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcC--CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            888888888  3555665666678999999999888 7788888889999999999999865556788889999999999


Q ss_pred             CcCcccc
Q 019237          295 NKLSGEL  301 (344)
Q Consensus       295 n~l~~~~  301 (344)
                      |.+....
T Consensus       169 N~~~c~c  175 (229)
T 3e6j_A          169 NPWDCEC  175 (229)
T ss_dssp             SCBCTTB
T ss_pred             CCccCCc
Confidence            9887654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=4.6e-16  Score=127.60  Aligned_cols=152  Identities=20%  Similarity=0.290  Sum_probs=85.3

Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++|++|++++|.+...+   .+..+++|++|++++|.+....    .+..+++|++|++++|.+.+..+   ..+..++
T Consensus        43 l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~  112 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYN----PISGLSNLERLRIMGKDVTSDKI---PNLSGLT  112 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCSCCG----GGTTCTTCCEEEEECTTCBGGGS---CCCTTCT
T ss_pred             cCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCCcch----hhhcCCCCCEEEeECCccCcccC---hhhcCCC
Confidence            344444444444444322   2444455555555555333221    34455566666666655544221   1234456


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCc-CcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEE
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNS-LRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRL  290 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  290 (344)
                      +|++|++++|.+.+ ..+ .....+++|++|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|+.|
T Consensus       113 ~L~~L~Ls~n~i~~-~~~-~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L  186 (197)
T 4ezg_A          113 SLTLLDISHSAHDD-SIL-TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL  186 (197)
T ss_dssp             TCCEEECCSSBCBG-GGH-HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred             CCCEEEecCCccCc-HhH-HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence            77777777777632 222 333445577777777776 54 445 56777888888888888774 44 56777888888


Q ss_pred             eCCCCcCcc
Q 019237          291 FLPHNKLSG  299 (344)
Q Consensus       291 ~L~~n~l~~  299 (344)
                      ++++|.+.+
T Consensus       187 ~l~~N~i~~  195 (197)
T 4ezg_A          187 YAFSQTIGG  195 (197)
T ss_dssp             EECBC----
T ss_pred             EeeCcccCC
Confidence            888887653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=3.6e-16  Score=140.47  Aligned_cols=171  Identities=24%  Similarity=0.262  Sum_probs=126.5

Q ss_pred             CccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhh-cCCCCCEEeCCCCCCCCCCccccccCC
Q 019237           39 CCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALL-KLHDLRHLDLSNNHFGGSPVPEFIGSL  108 (344)
Q Consensus        39 ~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l  108 (344)
                      .|.+..+.|...         ...++.|+|++|        .+++..+..+. .+++|++|++++|.++.. .+..|..+
T Consensus        17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N--------~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l   87 (361)
T 2xot_A           17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHN--------NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPV   87 (361)
T ss_dssp             EEETTEEECCSSCCSSCCSSCCTTCSEEECCSS--------CCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTC
T ss_pred             EECCCEEEeCCCCcCccCccCCCCCCEEECCCC--------CCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCC
Confidence            366777777431         245778888888        66665566666 888899999999988774 44568888


Q ss_pred             CCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHH---hhccc
Q 019237          109 SRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVV---AKLRS  185 (344)
Q Consensus       109 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l---~~~~~  185 (344)
                      ++|++|+|++|.+....+..|..+++|++|++++|.+..... ..+..+++|++|++++|.+...+.  ..+   ..+++
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~  164 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPK  164 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTT
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCc
Confidence            999999999888877777778888999999999998885543 567788899999999998887653  222   56888


Q ss_pred             CcEEEecCCCCCCCCCchhhccccCCc--ccEEEcCCCCCC
Q 019237          186 LKTLVLRSCALPPINPSFIWHFNLSTS--IETLDLSDNNLP  224 (344)
Q Consensus       186 L~~L~l~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~l~  224 (344)
                      |+.|++++|.+...+..   .+..++.  ++.|++++|.+.
T Consensus       165 L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSCEE
T ss_pred             CCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCCcc
Confidence            99999999988876642   2333344  478888888873

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=7.7e-16  Score=126.25  Aligned_cols=153  Identities=17%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             hcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCC
Q 019237           81 LKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSL  160 (344)
Q Consensus        81 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L  160 (344)
                      ..+++|++|++++|.++.  ++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.... +..+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDK-IPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGG-SCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCccc-ChhhcCCCCC
Confidence            344455555555555543  33 3445555555555555322  1224455555555555555554311 1334455555


Q ss_pred             CEEEccccccCCCCchHHHHhhcccCcEEEecCCC-CCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCc
Q 019237          161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA-LPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI  239 (344)
Q Consensus       161 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  239 (344)
                      ++|++++|.+....  +..+..+++|++|++++|. +...+     .+..+++|++|++++|.+.+  ++  ....+++|
T Consensus       115 ~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~~n~i~~--~~--~l~~l~~L  183 (197)
T 4ezg_A          115 TLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFDGVHD--YR--GIEDFPKL  183 (197)
T ss_dssp             CEEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECTTBCCCC--CT--TGGGCSSC
T ss_pred             CEEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECCCCCCcC--hH--HhccCCCC
Confidence            55555555554321  2345555566666666555 43332     23344566666666666532  21  22334466


Q ss_pred             cEEEccCCcCc
Q 019237          240 LVLDLAFNSLR  250 (344)
Q Consensus       240 ~~L~ls~n~l~  250 (344)
                      ++|++++|.+.
T Consensus       184 ~~L~l~~N~i~  194 (197)
T 4ezg_A          184 NQLYAFSQTIG  194 (197)
T ss_dssp             CEEEECBC---
T ss_pred             CEEEeeCcccC
Confidence            66666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=7.8e-17  Score=138.29  Aligned_cols=152  Identities=19%  Similarity=0.247  Sum_probs=103.9

Q ss_pred             hhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCC
Q 019237           79 ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLS  158 (344)
Q Consensus        79 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~  158 (344)
                      .+..+++|++|++++|.++.  ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+...+.   +.. +
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---~~~-~  106 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---IPS-A  106 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT---CCC-S
T ss_pred             chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc---ccc-C
Confidence            46677778888888877765  33 56677788888888777665443  7777788888888887776543   222 7


Q ss_pred             CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237          159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN  238 (344)
Q Consensus       159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  238 (344)
                      +|++|++++|.+....    .+..+++|+.|++++|.+.+.+     .+..+++|++|++++|.+.+  +  .....+++
T Consensus       107 ~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~~--~--~~l~~l~~  173 (263)
T 1xeu_A          107 CLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEITN--T--GGLTRLKK  173 (263)
T ss_dssp             SCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCCB--C--TTSTTCCC
T ss_pred             cccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCcc--h--HHhccCCC
Confidence            7888888887776653    4667777888888887776653     24555777888888887743  2  22344557


Q ss_pred             ccEEEccCCcCcCC
Q 019237          239 ILVLDLAFNSLRGS  252 (344)
Q Consensus       239 L~~L~ls~n~l~~~  252 (344)
                      |+.|++++|.+++.
T Consensus       174 L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          174 VNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCEEEEEEEEEECC
T ss_pred             CCEEeCCCCcccCC
Confidence            78888887777643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.65  E-value=1e-15  Score=127.73  Aligned_cols=140  Identities=24%  Similarity=0.251  Sum_probs=116.9

Q ss_pred             cchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhh
Q 019237           76 ISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLS  155 (344)
Q Consensus        76 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~  155 (344)
                      +|..+.  ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+...+. ..+.
T Consensus        26 iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~  101 (220)
T 2v9t_B           26 IPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFE  101 (220)
T ss_dssp             CCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTT
T ss_pred             CCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHcc
Confidence            444333  5799999999999874 44578889999999999999988889999999999999999999997664 5567


Q ss_pred             cCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCC
Q 019237          156 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLP  224 (344)
Q Consensus       156 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  224 (344)
                      .+++|++|++++|.+.....  ..+..+++|+.|++++|.+...++.   .+..+++|+.|++++|.+.
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCCCCEeCH--HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCCcC
Confidence            89999999999999988754  4678899999999999999887753   3556689999999999883

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=8.2e-18  Score=159.44  Aligned_cols=121  Identities=23%  Similarity=0.275  Sum_probs=91.2

Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      .|+.|++++|.+.  .++.  +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.|+
T Consensus       442 ~L~~L~Ls~n~l~--~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHKDLT--VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTSCCS--SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred             CceEEEecCCCCC--CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence            5778888888883  3443  445568888888888888 778888888888888888888884 66 678888888888


Q ss_pred             CCCCcCcccc-chHHhhccC----cccccccccccccccccccccccCCCCcceEe
Q 019237          292 LPHNKLSGEL-SEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAI  342 (344)
Q Consensus       292 L~~n~l~~~~-~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l  342 (344)
                      |++|.+++.. |..+..+++    ++++|++++.+|....   ....+|+|+.|++
T Consensus       515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~---l~~~lp~L~~L~l  567 (567)
T 1dce_A          515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER---LAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH---HHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH---HHHHCcccCccCC
Confidence            8888888776 777877776    8888888887663322   2335788888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.5e-15  Score=121.18  Aligned_cols=137  Identities=25%  Similarity=0.219  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCCCcccccCcccc-cccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLK-GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ  130 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  130 (344)
                      .+++.|+++++        .+. +.+|..+..+++|++|++++|.++.  + ..+..+++|++|++++|.+.+.+|..+.
T Consensus        24 ~~L~~L~l~~n--------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           24 AAVRELVLDNC--------KSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             TSCSEEECCSC--------BCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             ccCCEEECCCC--------CCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            44566666665        343 4455555556666666666666554  2 4455566666666666665555555555


Q ss_pred             cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH-HHHhhcccCcEEEecCCCCCCC
Q 019237          131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLVLRSCALPPI  199 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~  199 (344)
                      .+++|++|++++|.+...+.+..+..+++|++|++++|.+.....+. ..+..+++|+.|++.+|.....
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            56666666666666554443344555566666666666555443211 2345555555555555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=1.2e-17  Score=158.39  Aligned_cols=184  Identities=23%  Similarity=0.202  Sum_probs=122.9

Q ss_pred             CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCC-------------CCCCCchhhhhcCCCCCEEE-ccccccCC
Q 019237          107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN-------------LFSLGSLEWLSHLSSLRHLD-LSYINLTK  172 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~-------------l~~~~~~~~l~~~~~L~~L~-l~~~~~~~  172 (344)
                      .+++|+.|++++|.+. .+|..++++.+|+.|++++|.             .. ...+..+..+++|++|+ ++.+.+..
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccch
Confidence            3455555555544442 445555555555555554432             11 11224566677777777 55554322


Q ss_pred             CCchH---HHHh--hcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCC
Q 019237          173 SSDWF---QVVA--KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFN  247 (344)
Q Consensus       173 ~~~~~---~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n  247 (344)
                      .....   ..+.  ....|+.|++++|.+.+.+.     +..+++|+.|++++|.+.  .+|.. +..+++|+.|++++|
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-----~~~l~~L~~L~Ls~N~l~--~lp~~-~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLR--ALPPA-LAALRCLEVLQASDN  496 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-----GGGGTTCCEEECCSSCCC--CCCGG-GGGCTTCCEEECCSS
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcC-----ccccccCcEeecCccccc--ccchh-hhcCCCCCEEECCCC
Confidence            21100   0111  12368899999999887643     455689999999999983  55554 445668999999999


Q ss_pred             cCcCCchHhhhcCCCCCEEEccCCccCCCc-cccccCCCCCCEEeCCCCcCccccc
Q 019237          248 SLRGSIPEAFQHMVSLKSLHLTDNELEGGI-PKFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       248 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                      .+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|+|++|.+++..|
T Consensus       497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            9994 67 7888999999999999998665 8889999999999999999986644

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=3.6e-15  Score=116.45  Aligned_cols=130  Identities=24%  Similarity=0.227  Sum_probs=74.6

Q ss_pred             CcEEEEEcCCCCcccccCcccc-cccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLK-GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ  130 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  130 (344)
                      .+++.++++++        .+. +.+|..+..+++|++|++++|.++.  + ..++.+++|++|++++|.+.+.+|..+.
T Consensus        17 ~~l~~L~l~~n--------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   85 (149)
T 2je0_A           17 SDVKELVLDNS--------RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAE   85 (149)
T ss_dssp             GGCSEEECTTC--------BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred             ccCeEEEccCC--------cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence            34666666666        444 4555555666666666666666654  2 4555666666666666666555555555


Q ss_pred             cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH-HHHhhcccCcEEEec
Q 019237          131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLVLR  192 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~  192 (344)
                      .+++|++|++++|.+...+.+..+..+++|++|++++|.+.....+. ..+..+++|+.|+++
T Consensus        86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            56666666666666654333344556666666666666655543211 234555556555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=5.1e-15  Score=144.46  Aligned_cols=139  Identities=24%  Similarity=0.247  Sum_probs=106.0

Q ss_pred             HHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhh
Q 019237          178 QVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF  257 (344)
Q Consensus       178 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  257 (344)
                      ..+..++.|+.|+|++|.+...+..   .+ .+++|++|+|++|.+.  .++..+ ..+++|+.|+|++|.++ .+|..+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~---~~-~l~~L~~L~Ls~N~l~--~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~  289 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISAN---IF-KYDFLTRLYLNGNSLT--ELPAEI-KNLSNLRVLDLSHNRLT-SLPAEL  289 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGG---GG-GCCSCSCCBCTTSCCS--CCCGGG-GGGTTCCEEECTTSCCS-SCCSSG
T ss_pred             hhhccCCCCcEEECCCCCCCCCChh---hc-CCCCCCEEEeeCCcCc--ccChhh-hCCCCCCEEeCcCCcCC-ccChhh
Confidence            4567778888888888887765542   22 4588888899988883  555544 45568999999999988 778888


Q ss_pred             hcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC-----ccccccccccccccc
Q 019237          258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-----GCTMNSLEGVLEIIK  325 (344)
Q Consensus       258 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-----~l~~n~l~~~~~~~~  325 (344)
                      ..+++|+.|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+.....     ++++|.++|.+|...
T Consensus       290 ~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            88999999999999887 77888888999999999999999888887766433     688888888877543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=2.8e-14  Score=116.34  Aligned_cols=114  Identities=25%  Similarity=0.323  Sum_probs=79.6

Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      ++++|++++|.+...++.  ..+..+++|++|++++|.+.  .+.+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCCCSBCCS--CSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCEEECCCCcCCccCCc--cccccCCCCCEEECCCCCCC--CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            455555555555544431  12444567777777777773  34344445556788888888888766667777888888


Q ss_pred             EEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237          265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                      +|++++|++++..|..+..+++|+.|+|++|.+++..+
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88888888887777888888888888888888886654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=2.8e-14  Score=113.71  Aligned_cols=37  Identities=22%  Similarity=0.135  Sum_probs=16.8

Q ss_pred             CccEEEccCCcCcCCch---HhhhcCCCCCEEEccCCccC
Q 019237          238 NILVLDLAFNSLRGSIP---EAFQHMVSLKSLHLTDNELE  274 (344)
Q Consensus       238 ~L~~L~ls~n~l~~~~~---~~~~~~~~L~~L~l~~n~~~  274 (344)
                      +|++|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            34444444444442222   24444555555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=3.8e-14  Score=115.56  Aligned_cols=129  Identities=23%  Similarity=0.290  Sum_probs=109.6

Q ss_pred             cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcch-hhhccCCccEEEccCCcCcCCchHhhhcCCCCCE
Q 019237          187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPW-LFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS  265 (344)
Q Consensus       187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  265 (344)
                      +.++++++.+...+..+      ..++++|++++|.+.  .+++. .+..+++|++|++++|.+++..|..|..+++|+.
T Consensus        11 ~~l~~s~~~l~~ip~~~------~~~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI------PLHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCSCC------CTTCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCcCcCccCC------CCCCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence            67888888887766421      248999999999994  44442 4566779999999999999888999999999999


Q ss_pred             EEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccccccccccc
Q 019237          266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLEGVLEI  323 (344)
Q Consensus       266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~  323 (344)
                      |++++|++++..+..+..+++|+.|+|++|.+++..|..+..+++    ++++|++.+..+.
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            999999999777777999999999999999999988888887766    8999999887664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=9.4e-15  Score=129.54  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=55.2

Q ss_pred             CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC-EEEccCCccCCCccccccCCCCCC
Q 019237          210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK-SLHLTDNELEGGIPKFFGNMCSLN  288 (344)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~~l~~L~  288 (344)
                      +++|+.+++++|.+  ..++...+..+.+|+.|+++.| ++.....+|.++++|+ .+++.+ .++...+.+|.++++|+
T Consensus       225 ~~~L~~l~L~~n~i--~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNA--TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCc--ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            45666666666655  3455555556666666666665 4434455666666666 666665 44433345566666666


Q ss_pred             EEeCCCCcCccccchHHhhc
Q 019237          289 RLFLPHNKLSGELSEMIQNL  308 (344)
Q Consensus       289 ~L~L~~n~l~~~~~~~~~~l  308 (344)
                      .+++++|.++...+..|.++
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTT
T ss_pred             EEEeCCCccCccchhhhcCC
Confidence            66666666664444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=3.5e-13  Score=108.30  Aligned_cols=114  Identities=25%  Similarity=0.327  Sum_probs=85.7

Q ss_pred             ccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCC
Q 019237          184 RSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSL  263 (344)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L  263 (344)
                      ++|++|++++|.+.+.++.   .+..+++|++|++++|.+  ..+++..+..+++|+.|++++|.+++..+..+..+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHG---VFDKLTQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCcccEeCHH---HhcCcccccEEECCCCcc--eEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence            4566666666666654432   244557788888888877  34555555566789999999998886667778888999


Q ss_pred             CEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccc
Q 019237          264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELS  302 (344)
Q Consensus       264 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  302 (344)
                      +.|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus       103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999999999986555557889999999999999987655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=1.1e-13  Score=107.90  Aligned_cols=85  Identities=18%  Similarity=0.157  Sum_probs=42.4

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237           84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L  163 (344)
                      ++|++|++++|.++...++..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+... .+..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence            45666666666665111555555566666666665554443  3444555555555555555432 11333334444444


Q ss_pred             EccccccC
Q 019237          164 DLSYINLT  171 (344)
Q Consensus       164 ~l~~~~~~  171 (344)
                      ++++|.+.
T Consensus        94 ~ls~N~i~  101 (149)
T 2je0_A           94 NLSGNKIK  101 (149)
T ss_dssp             ECTTSCCC
T ss_pred             ECCCCcCC
Confidence            44444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=4.5e-13  Score=107.63  Aligned_cols=113  Identities=23%  Similarity=0.252  Sum_probs=79.2

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237           84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L  163 (344)
                      ++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.++..+. ..+..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH-HHhhCCcccCEE
Confidence            4677888888777654 44456777778888888777766655666777788888888887775543 445677778888


Q ss_pred             EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCC
Q 019237          164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN  200 (344)
Q Consensus       164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  200 (344)
                      ++++|.+...+.  ..+..+++|++|++++|.+....
T Consensus       106 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          106 ALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             ECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ECcCCcceEeCH--HHhcCCcccCEEEecCCCeeccC
Confidence            888877776543  34566777888888887776544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=4.4e-13  Score=109.28  Aligned_cols=109  Identities=24%  Similarity=0.331  Sum_probs=68.6

Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      ++++|++++|.+...+.    .+..+++|++|++++|.+  ..+++..+..+++|++|++++|.+++..+..|..+++|+
T Consensus        32 ~l~~L~L~~n~i~~ip~----~~~~l~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPK----ELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             TCCEEECCSSCCCSCCG----GGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCEEECCCCcCchhHH----HhhcccCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence            44555555555543331    234445666666666666  234444444555777777777777766666777777888


Q ss_pred             EEEccCCccCCCccccccCCCCCCEEeCCCCcCcc
Q 019237          265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  299 (344)
                      .|++++|++++..+..+..+++|+.|++++|.+..
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            88888887775444457777888888888887753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.7e-13  Score=110.04  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=71.5

Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchH--hhhcCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPE--AFQHMVS  262 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~~~  262 (344)
                      +|+.|++++|.+.+.     ..+..+++|++|++++|.+  ..+++.++..+++|++|++++|.++ .+|.  .+..+++
T Consensus        43 ~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~  114 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS  114 (176)
T ss_dssp             CCSEEECCSSCCCEE-----CCCCCCSSCCEEECCSSCC--CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTT
T ss_pred             CCCEEECCCCCCCcc-----cccccCCCCCEEECCCCcc--cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCC
Confidence            555555555555443     1244456777777777777  3444455455667888888888876 5554  6777888


Q ss_pred             CCEEEccCCccCCCccc----cccCCCCCCEEeCCCCcCcc
Q 019237          263 LKSLHLTDNELEGGIPK----FFGNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       263 L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~L~~n~l~~  299 (344)
                      |+.|++++|.++ .+|.    .+..+++|+.|++++|....
T Consensus       115 L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          115 LTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            888888888887 4555    37778888888888887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=9.4e-13  Score=107.30  Aligned_cols=110  Identities=23%  Similarity=0.278  Sum_probs=89.8

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237           84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L  163 (344)
                      ++|++|++++|.++.  ++..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+...+. ..+..+++|++|
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEE
Confidence            478889999998875  66788888999999999888888777888888999999999998886653 567788899999


Q ss_pred             EccccccCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237          164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPP  198 (344)
Q Consensus       164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  198 (344)
                      ++++|.+.....  ..+..+++|+.|++.+|.+.-
T Consensus       108 ~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          108 SLHGNDISVVPE--GAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             ECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEEC
T ss_pred             ECCCCCCCeeCh--hhhhcCccccEEEeCCCCeec
Confidence            999998887653  356778889999998887654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=9e-13  Score=105.77  Aligned_cols=108  Identities=24%  Similarity=0.256  Sum_probs=53.5

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEE
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLD  164 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~  164 (344)
                      +|++|++++|.++.  + ..+..+++|++|++++|.+....+..+..+++|++|++++|.+...+....+..+++|++|+
T Consensus        43 ~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence            55555555555544  2 34455555555555555554333233355555555555555554433222445555555555


Q ss_pred             ccccccCCCCch-HHHHhhcccCcEEEecCCC
Q 019237          165 LSYINLTKSSDW-FQVVAKLRSLKTLVLRSCA  195 (344)
Q Consensus       165 l~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~  195 (344)
                      +++|.+...+.. ...+..+++|+.|+++.|.
T Consensus       120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            555555443321 1124445555555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=1.7e-14  Score=118.21  Aligned_cols=19  Identities=5%  Similarity=0.088  Sum_probs=9.0

Q ss_pred             hhcCCCCCEEeCCCCCCCC
Q 019237           80 LLKLHDLRHLDLSNNHFGG   98 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~   98 (344)
                      +.....++.++++.+.+.+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~   32 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHG   32 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCB
T ss_pred             HHhcccccCcchheeEecc
Confidence            3444455555555544443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=3.5e-13  Score=119.40  Aligned_cols=230  Identities=14%  Similarity=0.145  Sum_probs=159.2

Q ss_pred             CCcEEEEEcCCCCcc--cccCccccc---------cc-chhhhc--------CCCCCEEeCCCCCCCCCCccccccCCCC
Q 019237           51 TGHVKVLNLRRSDDE--NARGKVLKG---------TI-SPALLK--------LHDLRHLDLSNNHFGGSPVPEFIGSLSR  110 (344)
Q Consensus        51 ~~~l~~l~l~~~~~~--~~~~~~~~~---------~~-~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~l~~l~~  110 (344)
                      .++++.|||+++.+.  ......+.+         .+ +.+|.+        +++|+.+++.. .++.. -...|..+++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI-EDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEE-CTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccch-hHHHhhcCcc
Confidence            457899999998766  111111111         22 235566        89999999988 77654 4456788899


Q ss_pred             CcEEEccCCcCCCcCCcccccCCCCcEEEccCCCC----CCCCchhhhhcC--------------------------CCC
Q 019237          111 LRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNL----FSLGSLEWLSHL--------------------------SSL  160 (344)
Q Consensus       111 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l----~~~~~~~~l~~~--------------------------~~L  160 (344)
                      |+.++++.|.+....+..|..+.++.++.......    ..... ..+..+                          .++
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-cccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence            99999998887777777788777777776655211    11110 112222                          233


Q ss_pred             CEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCcc
Q 019237          161 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIL  240 (344)
Q Consensus       161 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  240 (344)
                      ..+.+.++..  ...+......+++|+.+++.+|.+...+.   ..|..+.+|+.+++..| +  ..+....+..+.+|+
T Consensus       205 ~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n~i~~I~~---~aF~~~~~L~~l~l~~n-i--~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          205 NFLTIEGKLD--NADFKLIRDYMPNLVSLDISKTNATTIPD---FTFAQKKYLLKIKLPHN-L--KTIGQRVFSNCGRLA  276 (329)
T ss_dssp             SEEEEEECCC--HHHHHHHHHHCTTCCEEECTTBCCCEECT---TTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCC
T ss_pred             ceEEEeeeec--HHHHHHHHHhcCCCeEEECCCCCcceecH---hhhhCCCCCCEEECCcc-c--ceehHHHhhCChhcc
Confidence            4444433311  11111122348999999999998887664   46788899999999998 5  467788888888899


Q ss_pred             -EEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeC
Q 019237          241 -VLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL  292 (344)
Q Consensus       241 -~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L  292 (344)
                       .+++.. .++...+.+|.++++|+.+++++|.++...+.+|.++++|+.+..
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence             999998 777566789999999999999999999666678999999999864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=1.3e-13  Score=123.98  Aligned_cols=70  Identities=20%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             CccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCC----ccccccCCCCCCEEeCCCCcCccccchHHhh
Q 019237          238 NILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGG----IPKFFGNMCSLNRLFLPHNKLSGELSEMIQN  307 (344)
Q Consensus       238 ~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  307 (344)
                      +|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.    ++..+..+++|+.|+|++|.+++.....++.
T Consensus       184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            455555555544431    233344444555555555554431    1222333445555555555555444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=3.2e-14  Score=116.63  Aligned_cols=132  Identities=20%  Similarity=0.188  Sum_probs=67.4

Q ss_pred             ccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcc
Q 019237          128 PFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHF  207 (344)
Q Consensus       128 ~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  207 (344)
                      .+..+++|++|++++|.+...+   .+..+++|++|++++|.+...+.   .+..+++|+.|++++|.+.+.+     .+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~---~~~~l~~L~~L~l~~n~l~~l~~---~~~~~~~L~~L~L~~N~l~~l~-----~~  111 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLS-----GI  111 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC---CHHHHTTCCEEEEEEEEECSCSS---HHHHHHHCSEEEEEEEECCCHH-----HH
T ss_pred             HHhcCCCCCEEECCCCCCcccc---ccccCCCCCEEECCCCCcccccc---hhhcCCcCCEEECcCCcCCcCC-----cc
Confidence            4444555555555555554432   34445555555555555554332   3344455555555555554421     13


Q ss_pred             ccCCcccEEEcCCCCCCCCCCcc-hhhhccCCccEEEccCCcCcCCchH----------hhhcCCCCCEEEccCCccC
Q 019237          208 NLSTSIETLDLSDNNLPSSSVYP-WLFNLSRNILVLDLAFNSLRGSIPE----------AFQHMVSLKSLHLTDNELE  274 (344)
Q Consensus       208 ~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~----------~~~~~~~L~~L~l~~n~~~  274 (344)
                      ..+++|++|++++|.+.  .++. .....+++|++|++++|.+++..|.          .+..+++|+.||  ++.++
T Consensus       112 ~~l~~L~~L~l~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKIT--NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHSSEEEESEEECC--CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccCCCCCEEECCCCcCC--chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            33355666666666552  2221 1233344666666666666543332          366777788776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=1.3e-11  Score=98.29  Aligned_cols=109  Identities=26%  Similarity=0.309  Sum_probs=87.9

Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      ..++++++++.+...+..+      .++|++|++++|.+  ..+.+..+..+++|++|++++|++++..+..|..+++|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~------~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI------PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC------CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEeCCCCcCccCccC------CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence            3567888888887766421      27889999999998  445555566677899999999999977777788999999


Q ss_pred             EEEccCCccCCCccccccCCCCCCEEeCCCCcCcccc
Q 019237          265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL  301 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  301 (344)
                      +|++++|++++..+..+..+++|+.|+|++|.++...
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999999999666667889999999999999987553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=9.5e-14  Score=124.83  Aligned_cols=168  Identities=20%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCC--chHHHH-hhcccCcEEEecCCCCCCCCCc-hhhccc
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS--DWFQVV-AKLRSLKTLVLRSCALPPINPS-FIWHFN  208 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~l-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~  208 (344)
                      .+|++|++++|.+...........+++|++|++++|.+....  .+...+ ...++|++|++++|.++..... +...+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            345555555554432222111223345555555555544321  111112 1245566666666655432110 111223


Q ss_pred             cCCcccEEEcCCCCCCCCC--CcchhhhccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCCcccccc
Q 019237          209 LSTSIETLDLSDNNLPSSS--VYPWLFNLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGGIPKFFG  282 (344)
Q Consensus       209 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~  282 (344)
                      ..++|++|++++|.+.+..  .........++|+.|++++|.+++.    +...+..+++|++|+|++|.+++.....+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            3456777777777663210  0112223345788888888887752    344556678888888888888754333332


Q ss_pred             CC---C--CCCEEe--CCCCcCccc
Q 019237          283 NM---C--SLNRLF--LPHNKLSGE  300 (344)
Q Consensus       283 ~l---~--~L~~L~--L~~n~l~~~  300 (344)
                      .+   .  .|+.+.  +..+.++..
T Consensus       261 ~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          261 DLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HCC------CEEECCCC----CHHH
T ss_pred             HHhcCCCccchhhHhhhcCCccCHH
Confidence            22   2  277777  777766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=1.1e-11  Score=98.82  Aligned_cols=106  Identities=25%  Similarity=0.229  Sum_probs=90.8

Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEe
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLF  291 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  291 (344)
                      +.+.+++++|.+  ..++..+.   +++++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus        10 ~~~~l~~s~n~l--~~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSL--ASVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             ETTEEECTTSCC--SSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCc--CccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            578999999999  45665443   5899999999999988899999999999999999999976666788999999999


Q ss_pred             CCCCcCccccchHHhhccC----cccccccccccc
Q 019237          292 LPHNKLSGELSEMIQNLSG----GCTMNSLEGVLE  322 (344)
Q Consensus       292 L~~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~  322 (344)
                      |++|.+++..+..+..+++    ++++|++....+
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999999776666777766    899999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=2.9e-11  Score=96.73  Aligned_cols=107  Identities=23%  Similarity=0.305  Sum_probs=83.7

Q ss_pred             CcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCE
Q 019237          186 LKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS  265 (344)
Q Consensus       186 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  265 (344)
                      -+.++++++.+...+..+      .++|++|++++|.+  ..+++..+..+++|++|++++|++++..+..|..+++|+.
T Consensus        14 ~~~l~~~~n~l~~iP~~~------~~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI------PTDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC------CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCccCCCc------CCCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence            357778888777665421      27888999999988  3455555666678999999999998666666788999999


Q ss_pred             EEccCCccCCCccccccCCCCCCEEeCCCCcCccc
Q 019237          266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE  300 (344)
Q Consensus       266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  300 (344)
                      |+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus        86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             EECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99999999965555688899999999999998744

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.27  E-value=4.2e-11  Score=108.61  Aligned_cols=206  Identities=12%  Similarity=0.101  Sum_probs=93.7

Q ss_pred             hhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcC
Q 019237           78 PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHL  157 (344)
Q Consensus        78 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~  157 (344)
                      .+|.++ +|+.+.+..+ ++.. -...|.. .+|+.+.+. +.+.......|.+|.+|+.+++..|.++..+. ..+. .
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I-~~~aF~~-~~L~~i~lp-~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~-~aF~-~  202 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSI-GDMAFFN-STVQEIVFP-STLEQLKEDIFYYCYNLKKADLSKTKITKLPA-STFV-Y  202 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEE-CTTTTTT-CCCCEEECC-TTCCEECSSTTTTCTTCCEEECTTSCCSEECT-TTTT-T
T ss_pred             hhcccC-CccEEEeCCC-ccEE-CHHhcCC-CCceEEEeC-CCccEehHHHhhCcccCCeeecCCCcceEech-hhEe-e
Confidence            344443 4666666544 3322 1223333 245555555 23444444455555555555555555544332 1222 3


Q ss_pred             CCCCEEEccccccCCCCchHHHHhhcccCcEEEecCC---------------------CCCCCCCchhhccccCCcccEE
Q 019237          158 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSC---------------------ALPPINPSFIWHFNLSTSIETL  216 (344)
Q Consensus       158 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------------------~~~~~~~~~~~~~~~~~~L~~L  216 (344)
                      ++|+.+.+..+ +.....  ..+..+++|+.+.+..+                     .+....   ...|..+++|+.+
T Consensus       203 ~~L~~l~lp~~-l~~I~~--~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~---~~aF~~c~~L~~l  276 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGS--QAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIA---SRAFYYCPELAEV  276 (401)
T ss_dssp             CCCSEEECCTT-CCEECT--TTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEEC---TTTTTTCTTCCEE
T ss_pred             cccCEEEeCCc-hheehh--hHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEC---hhHhhCCCCCCEE
Confidence            44555554422 222211  23444444444444432                     122211   1234445556666


Q ss_pred             EcCCCCCCC---CCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237          217 DLSDNNLPS---SSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP  293 (344)
Q Consensus       217 ~l~~n~l~~---~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~  293 (344)
                      .+.++.+..   ..+....+..+++|+.+.+.. .++.....+|.++.+|+.+.+..+ ++.....+|.++ +|+.+.++
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence            555544310   023444455555566666552 344333445555566666666443 332334455555 66666666


Q ss_pred             CCcCcc
Q 019237          294 HNKLSG  299 (344)
Q Consensus       294 ~n~l~~  299 (344)
                      +|.+..
T Consensus       354 ~n~~~~  359 (401)
T 4fdw_A          354 GTTPPQ  359 (401)
T ss_dssp             CSSCCB
T ss_pred             CCCCcc
Confidence            655543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=4.5e-11  Score=95.60  Aligned_cols=107  Identities=21%  Similarity=0.232  Sum_probs=84.9

Q ss_pred             EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCC
Q 019237           55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG  134 (344)
Q Consensus        55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~  134 (344)
                      +.++++++        .+. .+|..+.  ++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..|..+++
T Consensus        15 ~~l~~~~n--------~l~-~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQNI--------RLA-SVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCSS--------CCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cEEEeCCC--------CCC-ccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            57888887        442 4555443  7899999999999875 5778888999999999999888766666788999


Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCC
Q 019237          135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS  174 (344)
Q Consensus       135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  174 (344)
                      |++|++++|.+...+. ..+..+++|++|++++|.+....
T Consensus        83 L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTB
T ss_pred             hhEEECCCCccceeCH-HHhccccCCCEEEeCCCCccccc
Confidence            9999999999886653 45778889999999988877553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.24  E-value=7.7e-11  Score=106.89  Aligned_cols=213  Identities=12%  Similarity=0.117  Sum_probs=150.5

Q ss_pred             cccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCch
Q 019237           72 LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSL  151 (344)
Q Consensus        72 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~  151 (344)
                      +...-+.+|.+|++|+.+++.+|.++.. -...|. +.+|+.+.+. +.+.......|.++.+|+.+.+..+ ++..+. 
T Consensus       168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I-~~~aF~-~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~-  242 (401)
T 4fdw_A          168 LEQLKEDIFYYCYNLKKADLSKTKITKL-PASTFV-YAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ-  242 (401)
T ss_dssp             CCEECSSTTTTCTTCCEEECTTSCCSEE-CTTTTT-TCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECT-
T ss_pred             ccEehHHHhhCcccCCeeecCCCcceEe-chhhEe-ecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCccc-
Confidence            3333445678888888888888877663 223333 6788888887 4466566677888888999988764 443433 


Q ss_pred             hhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCC--chhhccccCCcccEEEcCCCCCCCCCCc
Q 019237          152 EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP--SFIWHFNLSTSIETLDLSDNNLPSSSVY  229 (344)
Q Consensus       152 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~  229 (344)
                      ..+.. .+|+.+.+..+ +.....  ..+..+++|+.+.+.++.......  -....|..+.+|+.+.+..+ +  ..+.
T Consensus       243 ~aF~~-~~L~~i~lp~~-i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i--~~I~  315 (401)
T 4fdw_A          243 EAFRE-SGITTVKLPNG-VTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I--RILG  315 (401)
T ss_dssp             TTTTT-CCCSEEEEETT-CCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C--CEEC
T ss_pred             ccccc-CCccEEEeCCC-ccEECh--hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e--EEEh
Confidence            44445 78899988543 333322  467899999999998877651110  00346788899999999853 5  3666


Q ss_pred             chhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCC-CCCEEeCCCCcCc
Q 019237          230 PWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC-SLNRLFLPHNKLS  298 (344)
Q Consensus       230 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~  298 (344)
                      ...+..+.+|+.+.+..+ ++.....+|..+ +|+.+++.+|.........+.+++ +++.|.+..+.+.
T Consensus       316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            777888889999999665 654567788999 999999999988755556677774 7888888776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=1.4e-09  Score=96.76  Aligned_cols=95  Identities=26%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             ccchhhhcCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhh
Q 019237           75 TISPALLKLHDLRHLDLSN-NHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEW  153 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~  153 (344)
                      .+|. +..+++|++|+|++ |.+... .+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+...+. ..
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~   99 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KT   99 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TT
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH-HH
Confidence            4777 88999999999996 998874 55678999999999999999999888899999999999999999987663 33


Q ss_pred             hhcCCCCCEEEccccccCCC
Q 019237          154 LSHLSSLRHLDLSYINLTKS  173 (344)
Q Consensus       154 l~~~~~L~~L~l~~~~~~~~  173 (344)
                      +..++ |++|++.+|.+.-.
T Consensus       100 ~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A          100 VQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             TCSCC-CCEEECCSSCCCCC
T ss_pred             cccCC-ceEEEeeCCCccCC
Confidence            44444 99999999988755

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=4.4e-10  Score=100.26  Aligned_cols=84  Identities=12%  Similarity=0.208  Sum_probs=43.9

Q ss_pred             CCcccEEEcCCCCCCCCCCcchhh--hccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCCccccccC
Q 019237          210 STSIETLDLSDNNLPSSSVYPWLF--NLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGGIPKFFGN  283 (344)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~  283 (344)
                      +++|++|++.+|.+.+ .....+.  ..+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++......+..
T Consensus       251 ~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             CTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            3566666666665532 1111222  1244677777777766643    2333345667777777777666433333332


Q ss_pred             -CCCCCEEeCCCCc
Q 019237          284 -MCSLNRLFLPHNK  296 (344)
Q Consensus       284 -l~~L~~L~L~~n~  296 (344)
                       +  ...++++++.
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             1  3456666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=2.4e-09  Score=95.30  Aligned_cols=104  Identities=22%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             EEEecCC-CCCCCCCchhhccccCCcccEEEcCC-CCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCE
Q 019237          188 TLVLRSC-ALPPINPSFIWHFNLSTSIETLDLSD-NNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKS  265 (344)
Q Consensus       188 ~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  265 (344)
                      .++++++ .+...+.     +..+++|+.|+|++ |.+  ..+++..+..+++|+.|+|++|.+++..|..|..+++|+.
T Consensus        12 ~v~~~~~n~l~~ip~-----l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-----LPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             CEECCSSCCCTTTTT-----SCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             EEEcCCCCCCCccCC-----CCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence            3455655 5655443     34446788888875 777  3455555566668888888888888777778888888888


Q ss_pred             EEccCCccCCCccccccCCCCCCEEeCCCCcCcc
Q 019237          266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       266 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  299 (344)
                      |+|++|++++..+..+..++ |+.|+|.+|.+.-
T Consensus        85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             EeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            88888888854444455444 8888888888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=5.3e-10  Score=99.73  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             cCCccEEEccCCcCcCCchHhhh---cCCCCCEEEccCCccCCC----ccccccCCCCCCEEeCCCCcCccccchHHhh-
Q 019237          236 SRNILVLDLAFNSLRGSIPEAFQ---HMVSLKSLHLTDNELEGG----IPKFFGNMCSLNRLFLPHNKLSGELSEMIQN-  307 (344)
Q Consensus       236 ~~~L~~L~ls~n~l~~~~~~~~~---~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-  307 (344)
                      +++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.+++.....+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            45788888887777654433332   466788888888777653    2333345677888888888777665555554 


Q ss_pred             ccC--cccccc
Q 019237          308 LSG--GCTMNS  316 (344)
Q Consensus       308 l~~--~l~~n~  316 (344)
                      +-.  +++.++
T Consensus       331 lg~~~~~~~~~  341 (362)
T 2ra8_A          331 LPMKIDVSDSQ  341 (362)
T ss_dssp             CCSEEECCSBC
T ss_pred             cCCEEEecCCc
Confidence            311  555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.64  E-value=6.2e-09  Score=83.89  Aligned_cols=124  Identities=16%  Similarity=0.117  Sum_probs=65.5

Q ss_pred             cccccchhhhcCCCCCEEeCCCC-CCCCCC---ccccccCCCCCcEEEccCCcCCCcC----CcccccCCCCcEEEccCC
Q 019237           72 LKGTISPALLKLHDLRHLDLSNN-HFGGSP---VPEFIGSLSRLRYLNLSCGTSLLKV----PRPFQYLSGLVYLRLENS  143 (344)
Q Consensus        72 ~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~----~~~~~~l~~L~~L~ls~~  143 (344)
                      +...+...+...+.|++|++++| .+...+   +...+...++|++|+|++|.+....    ...+...++|++|+|++|
T Consensus        24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            34455666777778888888887 765431   2334455666777777766654322    222333455666666666


Q ss_pred             CCCCCCc---hhhhhcCCCCCEEEc--cccccCCC--CchHHHHhhcccCcEEEecCCC
Q 019237          144 NLFSLGS---LEWLSHLSSLRHLDL--SYINLTKS--SDWFQVVAKLRSLKTLVLRSCA  195 (344)
Q Consensus       144 ~l~~~~~---~~~l~~~~~L~~L~l--~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~  195 (344)
                      .+.....   ...+...++|++|++  ++|.+...  ..+...+...+.|++|++++|.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            6553221   123344455666666  45554433  1122334444555555555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=8.7e-09  Score=83.04  Aligned_cols=120  Identities=14%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             HhhcccCcEEEecCC-CCCCCCCc-hhhccccCCcccEEEcCCCCCCCCC--CcchhhhccCCccEEEccCCcCcCC---
Q 019237          180 VAKLRSLKTLVLRSC-ALPPINPS-FIWHFNLSTSIETLDLSDNNLPSSS--VYPWLFNLSRNILVLDLAFNSLRGS---  252 (344)
Q Consensus       180 l~~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~---  252 (344)
                      +...+.|++|++++| .+...... +...+...++|++|++++|.+.+..  .........++|++|+|++|.|++.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344455555555554 44321110 1112233356666666666663210  0111222334678888888877752   


Q ss_pred             -chHhhhcCCCCCEEEc--cCCccCCC----ccccccCCCCCCEEeCCCCcCcc
Q 019237          253 -IPEAFQHMVSLKSLHL--TDNELEGG----IPKFFGNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       253 -~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~  299 (344)
                       +...+...++|++|++  ++|.+...    +...+...++|+.|+|++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence             4556677788888888  77887753    34455666889999999888763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.56  E-value=1.5e-06  Score=78.61  Aligned_cols=236  Identities=17%  Similarity=0.109  Sum_probs=115.4

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCC------------
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCG------------  119 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~------------  119 (344)
                      ..++.+.+..         .++..-..+|.++.+|+.+++..+ ++.. -...|..+.+|+.+.+..+            
T Consensus        71 ~~L~~i~lp~---------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~  139 (394)
T 4fs7_A           71 RKVTEIKIPS---------TVREIGEFAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILLPLMLKSIGVEAFKGC  139 (394)
T ss_dssp             TTEEEEECCT---------TCCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred             CCceEEEeCC---------CccCcchhHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcccCceeeecceeeecc
Confidence            4677777764         344444557888888999888654 3221 1233444555554444311            


Q ss_pred             ---------cCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEE
Q 019237          120 ---------TSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV  190 (344)
Q Consensus       120 ---------~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~  190 (344)
                               .........|.++.+|+.+.+..+- ...+. ..+..+++|+.+.+..+. .....  ..+..+..|+.+.
T Consensus       140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~-~~F~~c~~L~~i~l~~~~-~~I~~--~~F~~~~~L~~i~  214 (394)
T 4fs7_A          140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHN-GLFSGCGKLKSIKLPRNL-KIIRD--YCFAECILLENME  214 (394)
T ss_dssp             CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECT-TTTTTCTTCCBCCCCTTC-CEECT--TTTTTCTTCCBCC
T ss_pred             cccccccCccccccchhhhcccCCCcEEecCCcc-ceecc-ccccCCCCceEEEcCCCc-eEeCc--hhhccccccceee
Confidence                     1111223456677788888876543 22222 446666777777665441 11111  1233344444433


Q ss_pred             ecCCCC---------------------CCCCCchhhccccCCcccEEEcCCCCCC--C----------------CCCcch
Q 019237          191 LRSCAL---------------------PPINPSFIWHFNLSTSIETLDLSDNNLP--S----------------SSVYPW  231 (344)
Q Consensus       191 l~~~~~---------------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~----------------~~~~~~  231 (344)
                      +..+..                     ....   ...+..+..++.+.+..+...  .                ..++..
T Consensus       215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~---~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~  291 (394)
T 4fs7_A          215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELG---KSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK  291 (394)
T ss_dssp             CCTTCCEECTTTTTTCCCCEEEECTTCCEEC---SSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT
T ss_pred             cCCCceEeehhhcccCCCceEEECCCceecc---cccccccccceeEEcCCCcceeeccccccccccceeccCceeeccc
Confidence            322110                     0000   112333445555554433210  0                011122


Q ss_pred             hhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhcc
Q 019237          232 LFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS  309 (344)
Q Consensus       232 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  309 (344)
                      .+..+.+|+.+.+..+ ++.....+|..+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++......|.+..
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            3334445666666543 33233456677777777777644 44333456777777777777655 4433334454433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.45  E-value=1.2e-08  Score=86.48  Aligned_cols=25  Identities=0%  Similarity=-0.158  Sum_probs=16.8

Q ss_pred             CCCccccceEEcCCCCcEEEEEcCC
Q 019237           37 RDCCKWRGVRCSNKTGHVKVLNLRR   61 (344)
Q Consensus        37 ~~~c~~~~~~c~~~~~~l~~l~l~~   61 (344)
                      ...|.|.|+.|...+.++..+...+
T Consensus        75 ~~l~~~~g~i~~~~~~ki~~~v~~~   99 (267)
T 3rw6_A           75 SALKAVNYKILDRENRRISIIINSS   99 (267)
T ss_dssp             HHHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred             HHHHhcCcEEECCCCCEEEEEEecC
Confidence            3468999999976555665554433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.41  E-value=1.8e-06  Score=78.01  Aligned_cols=99  Identities=14%  Similarity=0.242  Sum_probs=60.6

Q ss_pred             ccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCC
Q 019237          206 HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC  285 (344)
Q Consensus       206 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  285 (344)
                      .|..+..|+.+.+..+..   .+....+..+..|+.+.+.. .++......|..+.+|+.+.+..+ ++.....+|.+|.
T Consensus       260 aF~~c~~L~~i~lp~~~~---~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV---SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC---EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             eeeecccccEEecccccc---eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            456667788887765433   34445556666788887753 344344556777788888887654 4433345677778


Q ss_pred             CCCEEeCCCCcCccccchHHhhccC
Q 019237          286 SLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       286 ~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      +|+.+.|..+ ++......|.+..+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCC
Confidence            8888887544 44333445555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.40  E-value=1.6e-06  Score=78.31  Aligned_cols=202  Identities=15%  Similarity=0.156  Sum_probs=119.0

Q ss_pred             chhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCC-------
Q 019237           77 SPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLG-------  149 (344)
Q Consensus        77 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~-------  149 (344)
                      ..+|.++++|+.+.+..+.. .. -...|..+.+|+.+.+..+ +.......+.++..|+.+.+..+......       
T Consensus       155 ~~aF~~c~~L~~i~l~~~~~-~I-~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~  231 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSME-TL-HNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTG  231 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTCC-EE-CTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCC
T ss_pred             hhhhcccCCCcEEecCCccc-ee-ccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCC
Confidence            34677788888888865432 21 2345666777777777633 33334445556666666555443211000       


Q ss_pred             -------------chhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEE
Q 019237          150 -------------SLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETL  216 (344)
Q Consensus       150 -------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  216 (344)
                                   ....+..+..|+.+.+..+...-..   ..+..+..++.+......+.      ...+..+.+|+.+
T Consensus       232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~---~~F~~~~~l~~~~~~~~~i~------~~~F~~~~~L~~i  302 (394)
T 4fs7_A          232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGG---SLFYNCSGLKKVIYGSVIVP------EKTFYGCSSLTEV  302 (394)
T ss_dssp             CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECS---CTTTTCTTCCEEEECSSEEC------TTTTTTCTTCCEE
T ss_pred             CceEEECCCceecccccccccccceeEEcCCCcceeec---cccccccccceeccCceeec------ccccccccccccc
Confidence                         0022333444444444433221111   12344444554444333211      1245566888888


Q ss_pred             EcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCC
Q 019237          217 DLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN  295 (344)
Q Consensus       217 ~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n  295 (344)
                      .+..+ +  ..+....+..+.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++..+
T Consensus       303 ~l~~~-i--~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          303 KLLDS-V--KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECTT-C--CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccccc-c--ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            88665 3  2455666777779999999754 55455678999999999999877 55455668999999999998654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.27  E-value=3.7e-07  Score=72.01  Aligned_cols=83  Identities=12%  Similarity=0.133  Sum_probs=44.6

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCC-cCCcccccC----CCCcEEEccCCC-CCCCCchhhhhcCC
Q 019237           85 DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLL-KVPRPFQYL----SGLVYLRLENSN-LFSLGSLEWLSHLS  158 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-~~~~~~~~l----~~L~~L~ls~~~-l~~~~~~~~l~~~~  158 (344)
                      .|+.||++++.++..+ ...+..+++|++|+|++|...+ ..-..+..+    ++|++|++++|. ++ ......+..++
T Consensus        62 ~L~~LDLs~~~Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGGGCT
T ss_pred             eEeEEeCcCCCccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHhcCC
Confidence            4666666666655542 2334556666666666664322 211223322    356677776664 43 33334556667


Q ss_pred             CCCEEEccccc
Q 019237          159 SLRHLDLSYIN  169 (344)
Q Consensus       159 ~L~~L~l~~~~  169 (344)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=2.3e-06  Score=67.46  Aligned_cols=85  Identities=18%  Similarity=0.199  Sum_probs=40.5

Q ss_pred             CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcC----CCCCEEEccccccCCCCchHHHHhhccc
Q 019237          110 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHL----SSLRHLDLSYINLTKSSDWFQVVAKLRS  185 (344)
Q Consensus       110 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~~l~~~~~  185 (344)
                      +|++|++++|.+....-..+..+++|++|+|++|...+......+..+    ++|++|++++|.-..... ...+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCCC
Confidence            466666666655444444455566666666666642222222334332    245555555553221111 123444555


Q ss_pred             CcEEEecCCC
Q 019237          186 LKTLVLRSCA  195 (344)
Q Consensus       186 L~~L~l~~~~  195 (344)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            5555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=1.6e-06  Score=73.41  Aligned_cols=83  Identities=23%  Similarity=0.166  Sum_probs=47.7

Q ss_pred             CCCCCcEEEccCCcCCC--cCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCC----c-hHHH
Q 019237          107 SLSRLRYLNLSCGTSLL--KVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSS----D-WFQV  179 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~-~~~~  179 (344)
                      .+++|+.|+|++|.+.+  .++..+..+++|++|+|++|.+........+..+ +|++|++++|.+....    . ....
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            45666666666666655  3444455666677777777766654332333333 6777777777665421    0 1134


Q ss_pred             HhhcccCcEEE
Q 019237          180 VAKLRSLKTLV  190 (344)
Q Consensus       180 l~~~~~L~~L~  190 (344)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56777777764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.06  E-value=8.8e-05  Score=66.87  Aligned_cols=109  Identities=12%  Similarity=0.199  Sum_probs=75.2

Q ss_pred             HHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhh
Q 019237          179 VVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQ  258 (344)
Q Consensus       179 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  258 (344)
                      .+..+..|+.+.+..... ...   ...+..+..|+.+.+... +  ..+....+..+.+|+.+.+..+ ++.....+|.
T Consensus       260 aF~~c~~L~~i~lp~~~~-~I~---~~aF~~c~~L~~i~l~~~-i--~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV-SIG---TGAFMNCPALQDIEFSSR-I--TELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC-EEC---TTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             eeeecccccEEecccccc-eec---CcccccccccccccCCCc-c--cccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            456677888887764432 111   234666788888888643 3  2556667777778999988754 4434466788


Q ss_pred             cCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCc
Q 019237          259 HMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNK  296 (344)
Q Consensus       259 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~  296 (344)
                      +|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++.
T Consensus       332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            8889999988655 554456678888999999988764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.06  E-value=6.2e-05  Score=67.42  Aligned_cols=84  Identities=20%  Similarity=0.230  Sum_probs=42.8

Q ss_pred             cccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCC
Q 019237          207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCS  286 (344)
Q Consensus       207 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~  286 (344)
                      +..+.+|+.+.+..+ +  ..+....+..+.+|+.+.+..+.++.....+|.++.+|+.+.|..+ ++.....+|.++.+
T Consensus       259 F~~~~~l~~i~l~~~-i--~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  334 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-V--KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTTCTTCCEEEECCC-C--SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             cceeehhcccccccc-c--eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence            334445555555332 1  1333344455556666666655555334455666666666666543 33223345556666


Q ss_pred             CCEEeCCC
Q 019237          287 LNRLFLPH  294 (344)
Q Consensus       287 L~~L~L~~  294 (344)
                      |+.+.+..
T Consensus       335 L~~i~ip~  342 (379)
T 4h09_A          335 LSTISYPK  342 (379)
T ss_dssp             CCCCCCCT
T ss_pred             CCEEEECC
Confidence            66665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.67  E-value=2e-05  Score=63.30  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             CcccEEEcCCCCCCC--CCCcchhhhccCCccEEEccCCcCcC----CchHhhhcCCCCCEEEccCCc---cCC----Cc
Q 019237          211 TSIETLDLSDNNLPS--SSVYPWLFNLSRNILVLDLAFNSLRG----SIPEAFQHMVSLKSLHLTDNE---LEG----GI  277 (344)
Q Consensus       211 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~~~~L~~L~l~~n~---~~~----~~  277 (344)
                      ++|+.|+|++|.+.+  ..-.....+....|++|+|+.|.|.+    .+.+.+...+.|++|+|++|.   +..    .+
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            556666666666632  11122233344567777777777764    334556666778888887653   332    23


Q ss_pred             cccccCCCCCCEEeCCCCcCc
Q 019237          278 PKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       278 ~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      ...+...+.|+.|+++.|...
T Consensus       150 a~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhCCCcCeEeccCCCcc
Confidence            445666778888888766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.65  E-value=1.5e-05  Score=64.07  Aligned_cols=93  Identities=13%  Similarity=0.029  Sum_probs=46.7

Q ss_pred             ccchhhhcCCCCCEEeCCCC-CCCCCC---ccccccCCCCCcEEEccCCcCCCcCCccc----ccCCCCcEEEccCCCCC
Q 019237           75 TISPALLKLHDLRHLDLSNN-HFGGSP---VPEFIGSLSRLRYLNLSCGTSLLKVPRPF----QYLSGLVYLRLENSNLF  146 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~-~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~----~~l~~L~~L~ls~~~l~  146 (344)
                      .+...+.+-+.|+.|+|+++ .+...+   +.+.+.....|+.|+|++|.+.......+    ..-..|++|+|++|.+.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            44444555667777777764 554321   23444555666666666666553322222    23355556666655555


Q ss_pred             CCCch---hhhhcCCCCCEEEccc
Q 019237          147 SLGSL---EWLSHLSSLRHLDLSY  167 (344)
Q Consensus       147 ~~~~~---~~l~~~~~L~~L~l~~  167 (344)
                      .....   ..+...+.|++|+|++
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCC
Confidence            32221   2233334455555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.39  E-value=0.0017  Score=58.00  Aligned_cols=146  Identities=13%  Similarity=0.176  Sum_probs=95.2

Q ss_pred             cccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhc
Q 019237          127 RPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWH  206 (344)
Q Consensus       127 ~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  206 (344)
                      ..+..+..|+.+.+..+ +..... ..+..+.+|+.+.+..+ +.....  ..+..+..|+.+.+..+ +....   ...
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~-~~f~~~~~L~~i~lp~~-v~~I~~--~aF~~~~~l~~i~l~~~-i~~i~---~~a  281 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGD-GAFYGMKALDEIAIPKN-VTSIGS--FLLQNCTALKTLNFYAK-VKTVP---YLL  281 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECT-TTTTTCSSCCEEEECTT-CCEECT--TTTTTCTTCCEEEECCC-CSEEC---TTT
T ss_pred             cccccccccceeeeccc-eeEEcc-ccccCCccceEEEcCCC-ccEeCc--cccceeehhcccccccc-ceecc---ccc
Confidence            34455667777776543 222222 45667788888888655 222221  35677888888888643 33222   235


Q ss_pred             cccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCC
Q 019237          207 FNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMC  285 (344)
Q Consensus       207 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  285 (344)
                      |..+.+|+.+.+..+.+  ..+....+..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+++
T Consensus       282 F~~c~~L~~i~l~~~~i--~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAI--ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTTCTTCCEEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccccccccc--ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            77789999999988777  4566677788889999999754 55344668889999999888655 4433345565554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.32  E-value=0.0069  Score=45.06  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=19.6

Q ss_pred             CccEEEccCCcCcCCchHhhhcCCCCCEEEccCCcc
Q 019237          238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNEL  273 (344)
Q Consensus       238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~  273 (344)
                      ++++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455556655555544444455555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.26  E-value=0.012  Score=43.79  Aligned_cols=37  Identities=16%  Similarity=0.017  Sum_probs=18.1

Q ss_pred             CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCC
Q 019237          110 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLF  146 (344)
Q Consensus       110 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~  146 (344)
                      +|++|+|++|.+...-+..|..+++|++|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3455555555444444444444555555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	344
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 1e-19
 Identities = 66/310 (21%), Positives = 112/310 (36%), Gaps = 26/310 (8%)

Query: 5   CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCC--KWRGVRCSNKTGHVKVLNLRRS 62
           C  ++++ALL  K+ + +    LSSW       DCC   W GV C   T   +V NL  S
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 63  DDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSL 122
                        I  +L  L  L  L +   +    P+P  I  L++L YL ++     
Sbjct: 59  G----LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 123 LKVPRPFQYLSGLVYLR-------------LENSNLFSLGSLEWLSHLSSLRHLDLSYIN 169
             +P     +  LV L              + +       + +      ++     S+  
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 170 LTKSSDWF--QVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSS 227
           L  S      ++  K+      +  +      N        L  S +          S +
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 228 VYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSL 287
                  LS+N+  LDL  N + G++P+    +  L SL+++ N L G IP+  GN+   
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRF 293

Query: 288 NRLFLPHNKL 297
           +     +NK 
Sbjct: 294 DVSAYANNKC 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 3e-12
 Identities = 50/256 (19%), Positives = 80/256 (31%), Gaps = 30/256 (11%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN 144
           D   LDL NN            +L  L  L L         P  F  L  L  L L  + 
Sbjct: 32  DTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 145 LFSLGS--------------------LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 184
           L  L                          + L+ +  ++L    L  S         ++
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
            L  + +    +  I         L  S+  L L  N +  + V         N+  L L
Sbjct: 151 KLSYIRIADTNITTIPQG------LPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGL 202

Query: 245 AFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM 304
           +FNS+      +  +   L+ LHL +N+L   +P    +   +  ++L +N +S   S  
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 305 IQNLSGGCTMNSLEGV 320
                      S  GV
Sbjct: 262 FCPPGYNTKKASYSGV 277

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 3e-07
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 234 NLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP 293
           +L  +  +LDL  N +       F+++ +L +L L +N++    P  F  +  L RL+L 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 294 HNKLSG 299
            N+L  
Sbjct: 88  KNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 4e-07
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 208 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH 267
           +L      LDL +N +  + +    F   +N+  L L  N +    P AF  +V L+ L+
Sbjct: 28  DLPPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85

Query: 268 LTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQN 307
           L+ N+L+    K    +  L        K+   +   +  
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 37/234 (15%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 131
           +      A   L  L  L LS N     P  +   +L  LR                F  
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKV---RKSVFNG 122

Query: 132 LSGLVYLRLENSNLFSLGSL-EWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
           L+ ++ + L  + L S G        +  L ++ ++  N+T             SL  L 
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELH 177

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLR 250
           L    +  ++ + +   N       L     +  S S        +   L      N+  
Sbjct: 178 LDGNKITKVDAASLKGLN------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 251 GSIPEAFQHMVSLKSLHLTDNELEG------GIPKFFGNMCSLNRLFLPHNKLS 298
             +P        ++ ++L +N +          P +     S + + L  N + 
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 11/174 (6%)

Query: 74  GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 133
           G  + A   +  L ++ +++ +    P     G    L  L+L             + L+
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRS 193
            L  L L  +++ ++ +    +    LR L L+   L K           + ++ + L +
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLVKVPGGLA---DHKYIQVVYLHN 251

Query: 194 CALPPINPS---FIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDL 244
             +  I  +      +     S   + L  N +    + P  F        + L
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 34/204 (16%), Positives = 73/204 (35%), Gaps = 17/204 (8%)

Query: 72  LKGTISPALLKLHDLRHLDLSNNHFGGSP-VPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 130
           +          L+ +  ++L  N    S         + +L Y+ ++  T++  +P+   
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGL- 169

Query: 131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 190
               L  L L+  N  +      L  L++L  L LS+ +   S+     +A    L+ L 
Sbjct: 170 -PPSLTELHLDG-NKITKVDAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELH 225

Query: 191 LRSCALPPINPSFIWHFNLSTSIETLDLSDNNL----PSSSVYPWLFNLSRNILVLDLAF 246
           L +  L  +      H  +    + + L +NN+     +    P       +   + L  
Sbjct: 226 LNNNKLVKVPGGLADHKYI----QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

Query: 247 NSLRGS--IPEAFQHMVSLKSLHL 268
           N ++     P  F+ +    ++ L
Sbjct: 282 NPVQYWEIQPSTFRCVYVRAAVQL 305

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.9 bits (154), Expect = 5e-12
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 25/214 (11%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLE 141
           KL +L  L  +NN          + +L  L           LK       L+ L  L L 
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-----LKDIGTLASLTNLTDLDLA 249

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINP 201
           N+ + +L  L   S L+ L  L L    ++  S    + A           +  L     
Sbjct: 250 NNQISNLAPL---SGLTKLTELKLGANQISNISPLAGLTAL---------TNLELNENQL 297

Query: 202 SFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMV 261
             I   +   ++  L L  NN+   S    L  L R    L  A N +      +  ++ 
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR----LFFANNKVSD--VSSLANLT 351

Query: 262 SLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
           ++  L    N++    P    N+  + +L L   
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 5e-10
 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 20/184 (10%)

Query: 116 LSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSD 175
           L    + +    P   L+ L  L L  + L  +G+L   + L++L  LDL+   ++  + 
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL---ASLTNLTDLDLANNQISNLAP 258

Query: 176 WFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 235
                  L  L  L L +  +  I+P         T++  L+L++N L   S    L NL
Sbjct: 259 LSG----LTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 236 SRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHN 295
           +     L L FN++    P     +  L+ L   +N++         N+ ++N L   HN
Sbjct: 310 T----YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 296 KLSG 299
           ++S 
Sbjct: 362 QISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 4e-07
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 45/194 (23%)

Query: 78  PALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVY 137
             L  L +L  LDL+NN          +  L++L  L L         P     L+GL  
Sbjct: 235 GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISP-----LAGLTA 286

Query: 138 LRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALP 197
           L     N   L  +  +S+L +L +L L + N++  S                       
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS----------------------- 323

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
                     +  T ++ L  ++N +   S    L NL+ NI  L    N +    P   
Sbjct: 324 --------PVSSLTKLQRLFFANNKV---SDVSSLANLT-NINWLSAGHNQISDLTP--L 369

Query: 258 QHMVSLKSLHLTDN 271
            ++  +  L L D 
Sbjct: 370 ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 38/225 (16%), Positives = 72/225 (32%), Gaps = 18/225 (8%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLE 141
            L++L  ++ SNN          + +L++L  + ++        P         + L   
Sbjct: 64  YLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 142 NSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAK------LRSLKTLVLRSCA 195
                         +   L    +S I+        Q ++       L+ L  L      
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 196 LPPINPSFIWHFNLS-TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIP 254
               N           T++E+L  ++N +   +    L NL      L L  N L+    
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD----ELSLNGNQLKD--I 234

Query: 255 EAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
                + +L  L L +N++    P     +  L  L L  N++S 
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 277

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 80  LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLR 139
           +  L  L  L     +         I +L  L YL L    + +    P   L+ L  L 
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF--NNISDISPVSSLTKLQRLF 335

Query: 140 LENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCA 195
             N+    +  +  L++L+++  L   +  ++  +     +A L  +  L L   A
Sbjct: 336 FANNK---VSDVSSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQA 384

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 4e-08
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
           T+   L +L  + HLDLS+N      +P  + +L  L  L  S      +       L  
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNAL--ENVDGVANLPR 66

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLV 190
           L  L L N+ L    +++ L     L  L+L   +L +      ++   L S+ +++
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 137 YLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCAL 196
            L L + +L     L  L  L  + HLDLS+  L         +  L  L+        +
Sbjct: 2   VLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 197 PPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSL---RGSI 253
             +             ++ L L +N L  S+    L +    +++L+L  NSL    G  
Sbjct: 59  DGVANLPR--------LQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQEEGIQ 109

Query: 254 PEAFQHMVSLKSL 266
               + + S+ S+
Sbjct: 110 ERLAEMLPSVSSI 122

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 43/217 (19%), Positives = 69/217 (31%), Gaps = 8/217 (3%)

Query: 84  HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS 143
              + + L  N     P      +   L  L L            F  L+ L  L L ++
Sbjct: 32  AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 144 NLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF 203
                        L  L  L L    L +      +   L +L+ L L+  AL  +    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 204 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSL 263
                   ++  L L  N +   SV    F    ++  L L  N +    P AF+ +  L
Sbjct: 149 FRDLG---NLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGE 300
            +L+L  N L     +    + +L  L L  N    +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 10/203 (4%)

Query: 114 LNLSC-GTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTK 172
           +  SC    L  VP      +    + L  + +  + +        +L  L L    L +
Sbjct: 14  VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLAR 70

Query: 173 SSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL 232
                     L               +       F+    + TL L    L       + 
Sbjct: 71  IDAAAFTGLALLEQL----DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 233 FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFL 292
                 +  L L  N+L+    + F+ + +L  L L  N +     + F  + SL+RL L
Sbjct: 127 GL--AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 293 PHNKLSGELSEMIQNLSGGCTMN 315
             N+++       ++L    T+ 
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLY 207

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 41/207 (19%), Positives = 69/207 (33%), Gaps = 12/207 (5%)

Query: 93  NNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLE 152
           +N    S  P     L RL  L+L         P  F+ L+ L YL L+++ L +L   +
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-D 147

Query: 153 WLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTS 212
               L +L HL L    ++  S   +    L SL  L+L    +  ++P          +
Sbjct: 148 TFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 213 IETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE 272
           +            S++        R +  L L  N               L+    + +E
Sbjct: 206 L-----YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSE 259

Query: 273 LEGGIPKFFGNMCSLNRLFLPHNKLSG 299
           +   +P+            L  N L G
Sbjct: 260 VPCSLPQRLAGRDLKR---LAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 7e-08
 Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 4/218 (1%)

Query: 74  GTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS 133
                       ++H+DLSN+    S +   +   S+L+ L+L        +       S
Sbjct: 36  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95

Query: 134 GLVYL-RLENSNLFSLGSLEWLSHLSSLRHLDLS-YINLTKSSDWFQVVAKLRSLKTLVL 191
            LV L     S          LS  S L  L+LS   + T+      V     ++  L L
Sbjct: 96  NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 155

Query: 192 RSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAF-NSLR 250
                               ++  LDLSD+ +  +  +   F     +  L L+    + 
Sbjct: 156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDII 214

Query: 251 GSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLN 288
                    + +LK+L +     +G +      +  L 
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 4e-06
 Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 5/136 (3%)

Query: 210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG----SIPEAFQHMVSLKS 265
           S  I++LD+    L S + +  L  L +   V+ L    L       I  A +   +L  
Sbjct: 1   SLDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 266 LHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSGGCTMNSLEGVLEIIK 325
           L+L  NEL                  +    L               T+ +L  + E+  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 326 SHRAGRKSMRPLDWIA 341
           S      +   L    
Sbjct: 120 SDNLLGDAGLQLLCEG 135

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFI-WHFNLSTSIETLD 217
            ++ LD+    L+  + W +++  L+  + + L  C L       I     ++ ++  L+
Sbjct: 3   DIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 218 LSDNNLPSSSVY---PWLFNLSRNILVLDL 244
           L  N L    V+     L   S  I  L L
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 85  DLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSC----GTSLLKVPRPFQYLSGLVYLRL 140
           D++ LD+       +   E +  L + + + L            +    +    L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 141 ENSNLFSLGSLEWLSHLSS----LRHLDLSYIN 169
            ++ L  +G    L  L +    ++ L L    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 9/124 (7%)

Query: 194 CALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRG-- 251
            A      S +        ++  +    +     +   L      + VL LA   +    
Sbjct: 326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 385

Query: 252 --SIPEAFQHMVSLKSLHLTDNELEGGIPKFFG-----NMCSLNRLFLPHNKLSGELSEM 304
             S+        SL+ L L++N L                C L +L L     S E+ + 
Sbjct: 386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

Query: 305 IQNL 308
           +Q L
Sbjct: 446 LQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLR 192
           +  L ++   L      E L  L   + + L    LT++   D    +    +L  L LR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 193 SCALPPINPSFIWH--FNLSTSIETLDLSDNN 222
           S  L  +    +       S  I+ L L +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 38/217 (17%), Positives = 65/217 (29%), Gaps = 18/217 (8%)

Query: 82  KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRP-FQYLSGLVYLRL 140
           K+     ++    +   + +P  +        L+LS    L           + L  L L
Sbjct: 8   KVASHLEVNCDKRNL--TALPPDLPK--DTTILHLS-ENLLYTFSLATLMPYTRLTQLNL 62

Query: 141 ENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPIN 200
           + + L  L     L  L +L        +L         +               +    
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL-----------TVLDVSFNR 111

Query: 201 PSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHM 260
            + +    L    E  +L        ++ P L   +  +  L LA N+L          +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 261 VSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKL 297
            +L +L L +N L   IPK F     L   FL  N  
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 198 PINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAF 257
             +       +L  S+E L++S+N L    +      L R    L  +FN L   +PE  
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKL--IELPALPPRLER----LIASFNHL-AEVPELP 323

Query: 258 QHMVSLKSLHLTDNELEGGIPKFFGNMCSLN 288
           Q   +LK LH+  N L    P    ++  L 
Sbjct: 324 Q---NLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 75  TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 134
            I      L     +D S+N        +    L RL+ L ++            Q L  
Sbjct: 32  VIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88

Query: 135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDW-FQVVAKLRSLKTL 189
           L  L L N++L  LG L+ L+ L SL +L +    +T    +   V+ K+  ++ L
Sbjct: 89  LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 27/208 (12%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 99  SPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLS 158
           + +       +    + ++ G S +        L G+  L    + +    ++E + +L+
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV---TTIEGVQYLN 63

Query: 159 SLRHLDLSYINL----TKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIE 214
           +L  L+L    +       +       +L       + + A      +        T + 
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 215 TLDLSDNNLPSSSVYPWL---FNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDN 271
            L    N          +     L+    +  L+  + + S      ++  L +L   DN
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 272 ELEGGIPKFFGNMCSLNRLFLPHNKLSG 299
           ++    P    ++ +L  + L +N++S 
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISD 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.57
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.01
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.3e-37  Score=269.44  Aligned_cols=293  Identities=26%  Similarity=0.375  Sum_probs=240.1

Q ss_pred             CCHHHHHHHHHhHhhccccCCCCCCCCCCCCCCCCcc--ccceEEcCCC--CcEEEEEcCCCCcccccCccccc--ccch
Q 019237            5 CIDEEREALLTFKQSMVDKYGVLSSWGRDNDKRDCCK--WRGVRCSNKT--GHVKVLNLRRSDDENARGKVLKG--TISP   78 (344)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~--~~~~~c~~~~--~~l~~l~l~~~~~~~~~~~~~~~--~~~~   78 (344)
                      |.++|++||++|++++.+|. +..+|+   .++|||.  |.||+|+...  .||+.|+|+++        .+.|  .+|.
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~--------~l~g~~~lp~   70 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPIPS   70 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC--------CCSSCEECCG
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC--------CCCCCCCCCh
Confidence            89999999999999997774 578998   6889995  9999997643  48999999998        5665  5889


Q ss_pred             hhhcCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcC
Q 019237           79 ALLKLHDLRHLDLSN-NHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHL  157 (344)
Q Consensus        79 ~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~  157 (344)
                      +++++++|++|++++ |.+++. +|..++++++|++|++++|.+.+..+..+..+..|+++++++|.+... .+..+..+
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l  148 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSL  148 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGC
T ss_pred             HHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccC
Confidence            999999999999987 788776 899999999999999999999999999999999999999999987733 34778999


Q ss_pred             CCCCEEEccccccCCCCchHHHHhhcccC-cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhcc
Q 019237          158 SSLRHLDLSYINLTKSSDWFQVVAKLRSL-KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS  236 (344)
Q Consensus       158 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  236 (344)
                      ++++++++++|.+.+..+  ..+..+..+ +.+.+++|.+.+..+.   .+.. .....++++.+...+ .+ +......
T Consensus       149 ~~L~~l~l~~n~l~~~ip--~~~~~l~~l~~~l~~~~n~l~~~~~~---~~~~-l~~~~l~l~~~~~~~-~~-~~~~~~~  220 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPP---TFAN-LNLAFVDLSRNMLEG-DA-SVLFGSD  220 (313)
T ss_dssp             TTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEEEEECCG---GGGG-CCCSEEECCSSEEEE-CC-GGGCCTT
T ss_pred             cccceeeccccccccccc--cccccccccccccccccccccccccc---cccc-ccccccccccccccc-cc-ccccccc
Confidence            999999999998875532  356666665 8899999988776553   2333 344578888887744 33 3444455


Q ss_pred             CCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchH--HhhccC-ccc
Q 019237          237 RNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEM--IQNLSG-GCT  313 (344)
Q Consensus       237 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~-~l~  313 (344)
                      ++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|..++++++|++|+|++|.++|.+|+.  +..+.. +++
T Consensus       221 ~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~  299 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhC
Confidence            689999999999986655 5788899999999999999999999999999999999999999999853  233333 789


Q ss_pred             ccc-cccc
Q 019237          314 MNS-LEGV  320 (344)
Q Consensus       314 ~n~-l~~~  320 (344)
                      +|+ +.|.
T Consensus       300 ~N~~l~g~  307 (313)
T d1ogqa_         300 NNKCLCGS  307 (313)
T ss_dssp             SSSEEEST
T ss_pred             CCccccCC
Confidence            998 4553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=3.1e-25  Score=193.88  Aligned_cols=242  Identities=24%  Similarity=0.331  Sum_probs=199.0

Q ss_pred             CCCEEeCCCCCCCCC-CccccccCCCCCcEEEccC-CcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCE
Q 019237           85 DLRHLDLSNNHFGGS-PVPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRH  162 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~  162 (344)
                      .++.|+++++.+.+. .+|+.++++++|++|+|++ |.+.+.+|..|+++++|++|++++|.+..... ..+..+++|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhhcc
Confidence            588999999998764 3788999999999999986 78888999999999999999999999986554 56788999999


Q ss_pred             EEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEE
Q 019237          163 LDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVL  242 (344)
Q Consensus       163 L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  242 (344)
                      ++++.|.+....+  ..+..++.++.+++++|.+.+..+..  .......++.++++.|.+.+ .. +...... ....+
T Consensus       130 l~l~~N~~~~~~p--~~l~~l~~L~~l~l~~n~l~~~ip~~--~~~l~~l~~~l~~~~n~l~~-~~-~~~~~~l-~~~~l  202 (313)
T d1ogqa_         130 LDFSYNALSGTLP--PSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTG-KI-PPTFANL-NLAFV  202 (313)
T ss_dssp             EECCSSEEESCCC--GGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSEEEE-EC-CGGGGGC-CCSEE
T ss_pred             cccccccccccCc--hhhccCcccceeeccccccccccccc--cccccccccccccccccccc-cc-ccccccc-ccccc
Confidence            9999998776643  47889999999999999988655532  22222345889999998854 33 3334444 56689


Q ss_pred             EccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----cccccccc
Q 019237          243 DLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMNSLE  318 (344)
Q Consensus       243 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n~l~  318 (344)
                      +++.+.+.+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|+|++|+++|.+|+.++.+++    ++++|+|+
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            999999999999999999999999999999986555 5788999999999999999999999999887    99999999


Q ss_pred             cccccccccccccccCCCCcceEe
Q 019237          319 GVLEIIKSHRAGRKSMRPLDWIAI  342 (344)
Q Consensus       319 ~~~~~~~~~~~~~~~l~~L~~l~l  342 (344)
                      |.+|..       ..+++|+.+++
T Consensus       282 g~iP~~-------~~L~~L~~l~l  298 (313)
T d1ogqa_         282 GEIPQG-------GNLQRFDVSAY  298 (313)
T ss_dssp             EECCCS-------TTGGGSCGGGT
T ss_pred             ccCCCc-------ccCCCCCHHHh
Confidence            999843       24556665544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=6e-23  Score=178.48  Aligned_cols=261  Identities=21%  Similarity=0.257  Sum_probs=196.4

Q ss_pred             CCCCccccceEEcCC---------CCcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCcccccc
Q 019237           36 KRDCCKWRGVRCSNK---------TGHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIG  106 (344)
Q Consensus        36 ~~~~c~~~~~~c~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  106 (344)
                      +.-.|.|..+.|...         ...++.|+|++|        .++...+..|.++++|++|++++|.+... .+..|.
T Consensus         6 ~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N--------~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~   76 (305)
T d1xkua_           6 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN--------KITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFA   76 (305)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS--------CCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTT
T ss_pred             CCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCC--------cCCCcChhHhhcccccccccccccccccc-chhhhh
Confidence            344588999999632         256888899888        56644445788889999999999988874 466788


Q ss_pred             CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC
Q 019237          107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL  186 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L  186 (344)
                      .+++|++|++++|++.. +|..+  ...++.|.+..|.+..... ..+.....+..++...+...........+..+++|
T Consensus        77 ~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~-~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L  152 (305)
T d1xkua_          77 PLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  152 (305)
T ss_dssp             TCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             CCCccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhh-hhhhccccccccccccccccccCCCcccccccccc
Confidence            89999999999887654 44432  3578888888888876553 45666778888888877655443333467788899


Q ss_pred             cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEE
Q 019237          187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL  266 (344)
Q Consensus       187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  266 (344)
                      +.+++.+|.+...+.      ..+++|+.|++++|....  ..+..+...+.+++|++++|.+++..+.++..+++|++|
T Consensus       153 ~~l~l~~n~l~~l~~------~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         153 SYIRIADTNITTIPQ------GLPPSLTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             CEEECCSSCCCSCCS------SCCTTCSEEECTTSCCCE--ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             CccccccCCccccCc------ccCCccCEEECCCCcCCC--CChhHhhccccccccccccccccccccccccccccceee
Confidence            999999998876543      224789999999998843  344455566689999999999997778889999999999


Q ss_pred             EccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhh------ccC----cccccccc
Q 019237          267 HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQN------LSG----GCTMNSLE  318 (344)
Q Consensus       267 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~----~l~~n~l~  318 (344)
                      +|++|+++ .+|..+..+++|++|+|++|+++......|..      ..+    ++++|++.
T Consensus       225 ~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         225 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            99999998 67888999999999999999998543334332      122    67788763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=8.8e-23  Score=177.41  Aligned_cols=265  Identities=18%  Similarity=0.135  Sum_probs=211.0

Q ss_pred             EEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCC
Q 019237           54 VKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS  133 (344)
Q Consensus        54 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~  133 (344)
                      .+.+|-++.        .++ .+|..+.  +++++|++++|.++.. .+..|..+++|++|++++|.+....|..|.+++
T Consensus        12 ~~~~~C~~~--------~L~-~lP~~l~--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~   79 (305)
T d1xkua_          12 LRVVQCSDL--------GLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLV   79 (305)
T ss_dssp             TTEEECTTS--------CCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CCEEEecCC--------CCC-ccCCCCC--CCCCEEECcCCcCCCc-ChhHhhccccccccccccccccccchhhhhCCC
Confidence            345666665        455 5666553  5899999999999873 334788999999999999999988888999999


Q ss_pred             CCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237          134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI  213 (344)
Q Consensus       134 ~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  213 (344)
                      .|++|++++|.++..+.    ...+.++.|.+..|.+.....  ..+.....+..+....+........ ...+..+++|
T Consensus        80 ~L~~L~l~~n~l~~l~~----~~~~~l~~L~~~~n~l~~l~~--~~~~~~~~~~~l~~~~n~~~~~~~~-~~~~~~l~~L  152 (305)
T d1xkua_          80 KLERLYLSKNQLKELPE----KMPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKL  152 (305)
T ss_dssp             TCCEEECCSSCCSBCCS----SCCTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTC
T ss_pred             ccCEecccCCccCcCcc----chhhhhhhhhccccchhhhhh--hhhhccccccccccccccccccCCC-cccccccccc
Confidence            99999999999987663    245689999999998887654  4566777888888887754432211 2345666899


Q ss_pred             cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237          214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP  293 (344)
Q Consensus       214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~  293 (344)
                      +.+++++|.+.  .++..   ..++|++|++++|..++..+..+..++.++.|++++|.+.+..+..+.++++|++|+|+
T Consensus       153 ~~l~l~~n~l~--~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~  227 (305)
T d1xkua_         153 SYIRIADTNIT--TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  227 (305)
T ss_dssp             CEEECCSSCCC--SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             CccccccCCcc--ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecc
Confidence            99999999883  44433   34589999999999998888999999999999999999997777888999999999999


Q ss_pred             CCcCccccchHHhhccC----cccccccccccccccccccccccCCCCcceEec
Q 019237          294 HNKLSGELSEMIQNLSG----GCTMNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       294 ~n~l~~~~~~~~~~l~~----~l~~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      +|.++ .+|..+.+++.    ++++|+|+...+..+.-......++.|+.++|.
T Consensus       228 ~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~  280 (305)
T d1xkua_         228 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF  280 (305)
T ss_dssp             SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             ccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECC
Confidence            99998 66888888777    899999997666555444556677888888875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.9e-22  Score=168.93  Aligned_cols=216  Identities=21%  Similarity=0.171  Sum_probs=179.2

Q ss_pred             ccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCC-CCCCCCchhh
Q 019237           75 TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENS-NLFSLGSLEW  153 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~-~l~~~~~~~~  153 (344)
                      .+|..+.  +++++|+|++|.++.. .+..|..+++|++|++++|.+....+..+..+..++++....+ .+...+ +..
T Consensus        25 ~iP~~ip--~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~  100 (284)
T d1ozna_          25 AVPVGIP--AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PAT  100 (284)
T ss_dssp             SCCTTCC--TTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTT
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCC-CHHHhhcccccccccccccccccccccccccccccccccccccccccccc-chh
Confidence            4555443  4789999999999874 3456889999999999999988888888888899999887644 454443 366


Q ss_pred             hhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhh
Q 019237          154 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLF  233 (344)
Q Consensus       154 l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  233 (344)
                      +..+++|++|+++.|.+.....  ..+....+|+.+++.+|.+...++.   .+...++|++|++++|.+  ..+++..+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~l~l~~N~l~~i~~~---~f~~~~~L~~L~l~~N~l--~~l~~~~f  173 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRI--SSVPERAF  173 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC--CEECTTTT
T ss_pred             hcccccCCEEecCCcccccccc--cccchhcccchhhhccccccccChh---HhccccchhhcccccCcc--cccchhhh
Confidence            8889999999999998876643  3567788999999999999887653   466668999999999998  45666677


Q ss_pred             hccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCcccc
Q 019237          234 NLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGEL  301 (344)
Q Consensus       234 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  301 (344)
                      ..+++|+.+++++|++++..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...-
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            77789999999999999888999999999999999999999877888999999999999999988553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-21  Score=166.56  Aligned_cols=177  Identities=24%  Similarity=0.184  Sum_probs=113.3

Q ss_pred             CCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEE
Q 019237          110 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL  189 (344)
Q Consensus       110 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L  189 (344)
                      ++++|+|++|.+....+..|.++++|++|++++|.++..+   .+..+++|++|++++|.+.....   .+..+++|+.|
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~---~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L  105 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---VDGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVL  105 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---CCSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEE
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc---ccccccccccccccccccccccc---ccccccccccc
Confidence            3444444444433333333444444444444444444322   12344555555555555544332   34555666666


Q ss_pred             EecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEcc
Q 019237          190 VLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLT  269 (344)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~  269 (344)
                      +++++.+......   .+..+.+++.|++++|.+  ..+++..+...+.++.+++++|++++..+..+..+++|++|+|+
T Consensus       106 ~l~~~~~~~~~~~---~~~~l~~l~~L~l~~n~l--~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         106 DVSFNRLTSLPLG---ALRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             ECCSSCCCCCCSS---TTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccccccceeecc---cccccccccccccccccc--ceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            6666665554432   344457788888888877  45666666667788899999998887777788888999999999


Q ss_pred             CCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237          270 DNELEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       270 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      +|+++ .+|..+..+++|+.|+|++|.+.
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            99988 78888888899999999998775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=1.4e-20  Score=168.25  Aligned_cols=92  Identities=23%  Similarity=0.364  Sum_probs=69.1

Q ss_pred             CccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccc
Q 019237          238 NILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCT  313 (344)
Q Consensus       238 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~  313 (344)
                      .++.++++.|.+++ + ..+..+++++.|++++|++++ ++ .+..+++|++|++++|.+++ ++ .+.++++    +++
T Consensus       286 ~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         286 ALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAG  359 (384)
T ss_dssp             TCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECC
T ss_pred             cccccccccccccc-c-cccchhcccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECC
Confidence            44555555555442 2 236778899999999999985 43 37789999999999999985 34 5777666    999


Q ss_pred             ccccccccccccccccccccCCCCcceEec
Q 019237          314 MNSLEGVLEIIKSHRAGRKSMRPLDWIAIA  343 (344)
Q Consensus       314 ~n~l~~~~~~~~~~~~~~~~l~~L~~l~l~  343 (344)
                      +|++++..|        ...+++|+.|+|+
T Consensus       360 ~N~l~~l~~--------l~~l~~L~~L~L~  381 (384)
T d2omza2         360 HNQISDLTP--------LANLTRITQLGLN  381 (384)
T ss_dssp             SSCCCBCGG--------GTTCTTCSEEECC
T ss_pred             CCcCCCChh--------hccCCCCCEeeCC
Confidence            999998765        3478999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.6e-21  Score=167.62  Aligned_cols=250  Identities=21%  Similarity=0.197  Sum_probs=192.6

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCc-CCCcCCcccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGT-SLLKVPRPFQ  130 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~~~~~~  130 (344)
                      ..+++|+|++|        .++...+.+|.++++|++|++++|.+... .+..+..+..++++....+. +....+..+.
T Consensus        32 ~~~~~L~Ls~N--------~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  102 (284)
T d1ozna_          32 AASQRIFLHGN--------RISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFH  102 (284)
T ss_dssp             TTCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCCCEEECcCC--------cCCCCCHHHhhcccccccccccccccccc-ccccccccccccccccccccccccccchhhc
Confidence            45789999999        67755566899999999999999999875 55666778999999876544 4455577889


Q ss_pred             cCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccC
Q 019237          131 YLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLS  210 (344)
Q Consensus       131 ~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  210 (344)
                      ++++|++|++++|.+..... ..+...++|+++++++|.+.....  ..+..+++|++|++++|.+...++   ..+..+
T Consensus       103 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~l~l~~N~l~~i~~--~~f~~~~~L~~L~l~~N~l~~l~~---~~f~~l  176 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPE---RAFRGL  176 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCEECT---TTTTTC
T ss_pred             ccccCCEEecCCcccccccc-cccchhcccchhhhccccccccCh--hHhccccchhhcccccCcccccch---hhhccc
Confidence            99999999999999876553 567778999999999999988754  467888999999999999987665   346677


Q ss_pred             CcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEE
Q 019237          211 TSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRL  290 (344)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  290 (344)
                      ++|+.+++++|.+.  .+.+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+... -...++.+
T Consensus       177 ~~L~~l~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~-l~~~l~~~  253 (284)
T d1ozna_         177 HSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKF  253 (284)
T ss_dssp             TTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH-HHHHHHHC
T ss_pred             cccchhhhhhcccc--ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchH-HHHHHHhC
Confidence            99999999999994  4556666777899999999999998889999999999999999999875443211 01234444


Q ss_pred             eCCCCcCccccchHHhhccC-ccccccccc
Q 019237          291 FLPHNKLSGELSEMIQNLSG-GCTMNSLEG  319 (344)
Q Consensus       291 ~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~  319 (344)
                      ....+.+....|..+.+..- +++.+.+.|
T Consensus       254 ~~~~~~~~C~~p~~l~g~~l~~l~~~~l~g  283 (284)
T d1ozna_         254 RGSSSEVPCSLPQRLAGRDLKRLAANDLQG  283 (284)
T ss_dssp             CSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred             cCCCCceEeCCchHHcCCccccCCHHHCCC
Confidence            45555555556666655332 455554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=4.8e-19  Score=158.18  Aligned_cols=165  Identities=22%  Similarity=0.313  Sum_probs=107.3

Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++++.+++++|.+....   ....+++|++|++++|.+....    .+..+++|+.|++.+|.+.+..+     +..++
T Consensus       196 l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~  263 (384)
T d2omza2         196 LTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP-----LSGLT  263 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG-----GTTCT
T ss_pred             ccccceeeccCCccCCCC---cccccCCCCEEECCCCCCCCcc----hhhcccccchhccccCccCCCCc-----ccccc
Confidence            344555555555544332   2344556666666666655442    35566667777777666655432     33345


Q ss_pred             cccEEEcCCCCCCCC-------------------CCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCc
Q 019237          212 SIETLDLSDNNLPSS-------------------SVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNE  272 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~-------------------~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  272 (344)
                      +|++|+++++.+.+.                   .... .....+++++|++++|++++..  .+..+++|++|++++|+
T Consensus       264 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             cCCEeeccCcccCCCCcccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence            666666666554220                   0111 2345568999999999999543  37889999999999999


Q ss_pred             cCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC----ccccc
Q 019237          273 LEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG----GCTMN  315 (344)
Q Consensus       273 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----~l~~n  315 (344)
                      ++ .++ .+.++++|+.|++++|.+++..|  +.++++    ++++|
T Consensus       341 l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            98 455 58889999999999999997654  555544    66665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.4e-20  Score=155.88  Aligned_cols=197  Identities=27%  Similarity=0.241  Sum_probs=160.4

Q ss_pred             EEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCC
Q 019237           54 VKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS  133 (344)
Q Consensus        54 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~  133 (344)
                      ...+|.+++        +++ .+|..+.  +++++|+|++|.++.. .+..|..+++|++|++++|.+.. ++ .+..++
T Consensus        12 ~~~v~C~~~--------~L~-~iP~~lp--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~   77 (266)
T d1p9ag_          12 HLEVNCDKR--------NLT-ALPPDLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLP   77 (266)
T ss_dssp             CCEEECTTS--------CCS-SCCSCCC--TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCT
T ss_pred             CeEEEccCC--------CCC-eeCcCcC--cCCCEEECcCCcCCCc-CHHHhhccccccccccccccccc-cc-cccccc
Confidence            344577776        555 4565553  5799999999999874 44678899999999999998764 33 356789


Q ss_pred             CCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcc
Q 019237          134 GLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSI  213 (344)
Q Consensus       134 ~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L  213 (344)
                      +|++|++++|.+...+  ..+..+++|++|+++++.+.....  ..+..+.+++.|++.+|.+...++.   .+..++++
T Consensus        78 ~L~~L~Ls~N~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~l~~L~l~~n~l~~l~~~---~~~~l~~l  150 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPL--GALRGLGELQELYLKGNELKTLPPG---LLTPTPKL  150 (266)
T ss_dssp             TCCEEECCSSCCSSCC--CCTTTCTTCCEEECCSSCCCCCCS--STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTC
T ss_pred             cccccccccccccccc--cccccccccccccccccccceeec--cccccccccccccccccccceeccc---cccccccc
Confidence            9999999999998655  567889999999999999887654  3567889999999999999887653   35556899


Q ss_pred             cEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccC
Q 019237          214 ETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELE  274 (344)
Q Consensus       214 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  274 (344)
                      +.+++++|.+  ..+++..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus       151 ~~l~l~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         151 EKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CEEECTTSCC--SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             hhcccccccc--cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999999  4566666677779999999999999 88888888999999999999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=3.1e-18  Score=141.82  Aligned_cols=191  Identities=19%  Similarity=0.262  Sum_probs=147.0

Q ss_pred             hhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCC
Q 019237           79 ALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLS  158 (344)
Q Consensus        79 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~  158 (344)
                      .++.+.+|+.|++.+|.++.  + +.+..+++|++|++++|.+.+..|  +..+++++++++++|.++..   ..+..++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i---~~l~~l~  107 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV---SAIAGLQ  107 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC---GGGTTCT
T ss_pred             CHHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc---ccccccc
Confidence            34667789999999998876  5 457889999999999888765443  78889999999999988754   3477889


Q ss_pred             CCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCC
Q 019237          159 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN  238 (344)
Q Consensus       159 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  238 (344)
                      +|+++.++.+......    .+...+.+..+.+..+.+....+     +...++|++|++++|.+.+  . .. ...+++
T Consensus       108 ~L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~n~~~~--~-~~-l~~l~~  174 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSD--L-TP-LANLSK  174 (227)
T ss_dssp             TCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCC--C-GG-GTTCTT
T ss_pred             cccccccccccccccc----hhccccchhhhhchhhhhchhhh-----hcccccccccccccccccc--c-hh-hccccc
Confidence            9999999988776654    35677888889888887765432     4455789999999988743  2 22 344568


Q ss_pred             ccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCC
Q 019237          239 ILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPH  294 (344)
Q Consensus       239 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~  294 (344)
                      |++|++++|++++ ++. +..+++|++|++++|+++ .++. +..+++|+.|++++
T Consensus       175 L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         175 LTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             ceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence            9999999998884 443 778899999999999988 4543 77889999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-18  Score=147.68  Aligned_cols=254  Identities=19%  Similarity=0.140  Sum_probs=165.3

Q ss_pred             EEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCc-CCcccccCCC
Q 019237           56 VLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLK-VPRPFQYLSG  134 (344)
Q Consensus        56 ~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~-~~~~~~~l~~  134 (344)
                      .+|+++.        .+.......+.. ..+..+.++...+... . .......+|++|++++|.+... +...+.++++
T Consensus         4 ~lDLs~~--------~l~~~~l~~l~~-~~~~~lrl~~~~~~~~-~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~   72 (284)
T d2astb2           4 TLDLTGK--------NLHPDVTGRLLS-QGVIAFRCPRSFMDQP-L-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK   72 (284)
T ss_dssp             EEECTTC--------BCCHHHHHHHHH-TTCSEEECTTCEECSC-C-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             EEECCCC--------CCCchHHHHHHh-ccceEeeccccccccc-h-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCC
Confidence            5778776        333222222222 2355666666554331 2 2223456899999998876643 3344567899


Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCccc
Q 019237          135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIE  214 (344)
Q Consensus       135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  214 (344)
                      |++|++++|.+.. .....+..+++|++|++++|.......+......+++|++|++++|...............+++|+
T Consensus        73 L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~  151 (284)
T d2astb2          73 LQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  151 (284)
T ss_dssp             CSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             cccccccccCCCc-HHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccc
Confidence            9999999997763 334667888999999999875433333334456789999999988743221110011223347899


Q ss_pred             EEEcCCCC--CCCCCCcchhhhccCCccEEEccCC-cCcCCchHhhhcCCCCCEEEccCC-ccCCCccccccCCCCCCEE
Q 019237          215 TLDLSDNN--LPSSSVYPWLFNLSRNILVLDLAFN-SLRGSIPEAFQHMVSLKSLHLTDN-ELEGGIPKFFGNMCSLNRL  290 (344)
Q Consensus       215 ~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L  290 (344)
                      .|+++++.  +++ .....+...+++|++|++++| .+++.....+..+++|++|++++| .+++.....+.++++|+.|
T Consensus       152 ~L~l~~~~~~i~~-~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         152 QLNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             EEECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             hhhhccccccccc-ccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEE
Confidence            99998763  332 233445566779999999987 577777778888999999999996 5666666678889999999


Q ss_pred             eCCCCcCccccchHHhhccC-cccccccccccc
Q 019237          291 FLPHNKLSGELSEMIQNLSG-GCTMNSLEGVLE  322 (344)
Q Consensus       291 ~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~~~~  322 (344)
                      ++++|--.+.++.....++. .+..+++++..+
T Consensus       231 ~l~~~~~d~~l~~l~~~lp~L~i~~~~ls~~~~  263 (284)
T d2astb2         231 QVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR  263 (284)
T ss_dssp             ECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             eeeCCCCHHHHHHHHHhCccccccCccCCCCCC
Confidence            99998333333333445665 666666766543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.7e-16  Score=129.53  Aligned_cols=165  Identities=21%  Similarity=0.248  Sum_probs=103.6

Q ss_pred             CCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCc
Q 019237          108 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK  187 (344)
Q Consensus       108 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~  187 (344)
                      +.+|++|++++|.+....  .+..+++|++|++++|.++..+   .+..+++|++|++++|.+....    .+..+++|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~---~~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDENKVKDLS----SLKDLKKLK  115 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCGG----GGTTCTTCC
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc---ccccCccccccccccccccccc----ccccccccc
Confidence            445566666655544321  2455666666666666665433   2455666666666666665432    355666777


Q ss_pred             EEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEE
Q 019237          188 TLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLH  267 (344)
Q Consensus       188 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  267 (344)
                      .|++.+|.+....     .+..++.++.+++++|.+.+   ... ...+++|+.+++++|.+++ ++. +..+++|++|+
T Consensus       116 ~L~l~~~~~~~~~-----~l~~l~~l~~l~~~~n~l~~---~~~-~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~  184 (210)
T d1h6ta2         116 SLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITD---ITV-LSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLY  184 (210)
T ss_dssp             EEECTTSCCCCCG-----GGGGCTTCCEEECCSSCCCC---CGG-GGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred             ccccccccccccc-----cccccccccccccccccccc---ccc-ccccccccccccccccccc-ccc-ccCCCCCCEEE
Confidence            7777766655432     24445677777777777733   122 3344578888888888874 332 67788888888


Q ss_pred             ccCCccCCCccccccCCCCCCEEeCCC
Q 019237          268 LTDNELEGGIPKFFGNMCSLNRLFLPH  294 (344)
Q Consensus       268 l~~n~~~~~~~~~l~~l~~L~~L~L~~  294 (344)
                      +++|+++ .++ .+.++++|+.|+|++
T Consensus       185 Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            8888887 455 477888888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.7e-16  Score=129.48  Aligned_cols=175  Identities=21%  Similarity=0.270  Sum_probs=132.1

Q ss_pred             ccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCc
Q 019237           71 VLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGS  150 (344)
Q Consensus        71 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~  150 (344)
                      .+++.++.  ..+..|++|+++++.++..  . .+..+++|++|++++|.+.+..  .+..+++|++|++++|.++..+ 
T Consensus        35 ~~~~~~~~--~~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~-  106 (210)
T d1h6ta2          35 SVTDAVTQ--NELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS-  106 (210)
T ss_dssp             CTTSEECH--HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG-
T ss_pred             ccCCccCH--HHhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc-
Confidence            44444443  3466889999999988763  2 3677899999999988776533  3677889999999999887543 


Q ss_pred             hhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcc
Q 019237          151 LEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYP  230 (344)
Q Consensus       151 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  230 (344)
                        .+..+++|++|++++|.+....    .+..++.++.+++++|.+.+..     .+..+++|+++++++|.+.  .+.+
T Consensus       107 --~l~~l~~L~~L~l~~~~~~~~~----~l~~l~~l~~l~~~~n~l~~~~-----~~~~l~~L~~l~l~~n~l~--~i~~  173 (210)
T d1h6ta2         107 --SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQIS--DIVP  173 (210)
T ss_dssp             --GGTTCTTCCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCC--CCGG
T ss_pred             --cccccccccccccccccccccc----cccccccccccccccccccccc-----ccccccccccccccccccc--cccc
Confidence              4778899999999998876553    5678888999999998877643     2445688999999999884  3332


Q ss_pred             hhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccC
Q 019237          231 WLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTD  270 (344)
Q Consensus       231 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~  270 (344)
                        ...+++|++|++++|.++ .++ .+..+++|++|+|++
T Consensus       174 --l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 --LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             --ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence              345568999999999988 455 578889999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.4e-17  Score=137.73  Aligned_cols=208  Identities=17%  Similarity=0.138  Sum_probs=133.2

Q ss_pred             ccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcC-CcccccCCCCcEEEccC-CCCCCCCchh
Q 019237           75 TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKV-PRPFQYLSGLVYLRLEN-SNLFSLGSLE  152 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-~~~~~~l~~L~~L~ls~-~~l~~~~~~~  152 (344)
                      .+|..+.  +++++|++++|.++.. .+..|.++++|++|++++|.+...+ +..|..++.++++.+.. +.+.... +.
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~   97 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PE   97 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-TT
T ss_pred             CcCCCCC--CCCCEEECcCCcCCcc-ChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc-cc
Confidence            4555442  4789999999998763 3346788999999999999887654 45677889999998765 4454333 25


Q ss_pred             hhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhcccc-CCcccEEEcCCCCCCCCCCcch
Q 019237          153 WLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNL-STSIETLDLSDNNLPSSSVYPW  231 (344)
Q Consensus       153 ~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~  231 (344)
                      .+..+++|++++++++.+..... ...+..+..+..+...++.+......   .+.. ...++.+++++|.+  ..+...
T Consensus        98 ~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~---~~~~~~~~l~~L~l~~n~l--~~i~~~  171 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGI--QEIHNC  171 (242)
T ss_dssp             SEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCC--CEECTT
T ss_pred             cccccccccccccchhhhccccc-cccccccccccccccccccccccccc---ccccccccceeeecccccc--cccccc
Confidence            67788899999999888765532 12334445555555555555544331   2222 24677788888877  334444


Q ss_pred             hhhccCCccEE-EccCCcCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCC
Q 019237          232 LFNLSRNILVL-DLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLP  293 (344)
Q Consensus       232 ~~~~~~~L~~L-~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~  293 (344)
                      .+... ++.++ ++++|+++...+..|.++++|++|++++|+++...+..+.++++|+.+++.
T Consensus       172 ~~~~~-~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         172 AFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTTTC-CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccch-hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            44433 44444 456677774444567777888888888888774334445555655555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-15  Score=124.97  Aligned_cols=186  Identities=20%  Similarity=0.271  Sum_probs=148.9

Q ss_pred             CcEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCccccc
Q 019237           52 GHVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY  131 (344)
Q Consensus        52 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  131 (344)
                      ..++.+++.++        .++. ++ .+.++++|++|++++|.++.  +. .+..+++|+++++++|.+.. + ..+..
T Consensus        41 ~~L~~L~l~~~--------~i~~-l~-~l~~l~~L~~L~ls~n~i~~--~~-~l~~l~~l~~l~~~~n~~~~-i-~~l~~  105 (227)
T d1h6ua2          41 DGITTLSAFGT--------GVTT-IE-GVQYLNNLIGLELKDNQITD--LA-PLKNLTKITELELSGNPLKN-V-SAIAG  105 (227)
T ss_dssp             HTCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CG-GGTTCCSCCEEECCSCCCSC-C-GGGTT
T ss_pred             CCcCEEECCCC--------CCCc-ch-hHhcCCCCcEeecCCceeec--cc-cccccccccccccccccccc-c-ccccc
Confidence            46899999998        4543 43 47899999999999999976  33 37889999999999887653 3 35788


Q ss_pred             CCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCC
Q 019237          132 LSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLST  211 (344)
Q Consensus       132 l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  211 (344)
                      +++|+++.++++.....   ..+...+.++.+.++.+.+....    .+..+++|+.|++++|.+.+..+     +..++
T Consensus       106 l~~L~~l~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~-----l~~l~  173 (227)
T d1h6ua2         106 LQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSDLTP-----LANLS  173 (227)
T ss_dssp             CTTCCEEECTTSCCCCC---GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGG-----GTTCT
T ss_pred             ccccccccccccccccc---chhccccchhhhhchhhhhchhh----hhccccccccccccccccccchh-----hcccc
Confidence            99999999999987644   34677889999999998877654    46788999999999998876432     56679


Q ss_pred             cccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccC
Q 019237          212 SIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTD  270 (344)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~  270 (344)
                      +|+.|++++|.+.  .++ . ...+++|++|++++|++++ ++ .+..+++|+.|++++
T Consensus       174 ~L~~L~Ls~n~l~--~l~-~-l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         174 KLTTLKADDNKIS--DIS-P-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCSSCCC--CCG-G-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             cceecccCCCccC--CCh-h-hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            9999999999984  333 3 3455799999999999995 44 278999999999873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=9.3e-16  Score=123.94  Aligned_cols=162  Identities=18%  Similarity=0.296  Sum_probs=99.5

Q ss_pred             CCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhcccC
Q 019237          107 SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL  186 (344)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L  186 (344)
                      .++++++|++++|.+...  ..+..+++|++|++++|.++..+   .+..+++|++|++++|.+....    .+..++.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L  108 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADIT----PLANLTNL  108 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG----GGTTCTTC
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc---cccCCccccccccccccccccc----cccccccc
Confidence            345566666665554421  23455666666666666665432   2556666666666666655443    35566677


Q ss_pred             cEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEE
Q 019237          187 KTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSL  266 (344)
Q Consensus       187 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  266 (344)
                      +.|+++++......     .+..+++|+.|++++|.+.  .+ +. ....++++.|++.+|.+++ ++ .+..+++|++|
T Consensus       109 ~~L~l~~~~~~~~~-----~~~~l~~L~~L~l~~n~l~--~~-~~-l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L  177 (199)
T d2omxa2         109 TGLTLFNNQITDID-----PLKNLTNLNRLELSSNTIS--DI-SA-LSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERL  177 (199)
T ss_dssp             SEEECCSSCCCCCG-----GGTTCTTCSEEECCSSCCC--CC-GG-GTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             cccccccccccccc-----ccchhhhhHHhhhhhhhhc--cc-cc-ccccccccccccccccccC-Cc-cccCCCCCCEE
Confidence            77777666655432     2344577777777777762  22 22 2344578888888888774 33 36778888888


Q ss_pred             EccCCccCCCccccccCCCCCCEE
Q 019237          267 HLTDNELEGGIPKFFGNMCSLNRL  290 (344)
Q Consensus       267 ~l~~n~~~~~~~~~l~~l~~L~~L  290 (344)
                      ++++|++++ ++ .+.++++|+.|
T Consensus       178 ~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ECCCCCCCC-Cc-cccCCCCCCcC
Confidence            888888873 44 46777888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-17  Score=142.86  Aligned_cols=219  Identities=19%  Similarity=0.157  Sum_probs=127.6

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCC-CCCCCchhhhhcCCCCC
Q 019237           83 LHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSN-LFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        83 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~-l~~~~~~~~l~~~~~L~  161 (344)
                      ...|++|+++++.++...+...+.++++|++|++++|.+....+..+..+++|++|++++|. ++..........+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34677777777766544344556677777777777776665555666677777777777753 33222222345677788


Q ss_pred             EEEccccccCCCCchHHHHh-hcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCC-CCCCCCcchhhhccCCc
Q 019237          162 HLDLSYINLTKSSDWFQVVA-KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNN-LPSSSVYPWLFNLSRNI  239 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L  239 (344)
                      +|++++|.......+...+. .++.|+.|+++++...-...........+++|++|++++|. +++ .....+. .+++|
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~-~~~~L  202 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFF-QLNYL  202 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGG-GCTTC
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc-hhhhhhc-ccCcC
Confidence            88887764332222222333 34678888877653111111112233445778888888764 333 3444443 34578


Q ss_pred             cEEEccCC-cCcCCchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHh
Q 019237          240 LVLDLAFN-SLRGSIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQ  306 (344)
Q Consensus       240 ~~L~ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  306 (344)
                      ++|++++| .+++.....+..+++|+.|+++++--.+.+......+|+|+   +..+.+++..+..++
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~  267 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIG  267 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCS
T ss_pred             CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccC
Confidence            88888885 56655566677788888888888722223333334566655   455666655444333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.1e-15  Score=123.47  Aligned_cols=162  Identities=22%  Similarity=0.283  Sum_probs=83.5

Q ss_pred             cCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 019237           82 KLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLR  161 (344)
Q Consensus        82 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~  161 (344)
                      .+.++++|+++++.++.  + +.+..+++|++|++++|.+.+..+  +.++++|++|++++|.+...+   .+..+++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT---PLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCS
T ss_pred             HhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc---ccccccccc
Confidence            44556666666665544  2 234455666666666555443222  555566666666666555432   245556666


Q ss_pred             EEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccE
Q 019237          162 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILV  241 (344)
Q Consensus       162 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  241 (344)
                      +|+++++......    .+..+++|+.|++++|.+...+     .+..+++|+.|++.+|.+.+  +. . ...+++|++
T Consensus       110 ~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~-----~l~~~~~L~~L~l~~n~l~~--l~-~-l~~l~~L~~  176 (199)
T d2omxa2         110 GLTLFNNQITDID----PLKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLNFSSNQVTD--LK-P-LANLTTLER  176 (199)
T ss_dssp             EEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG-----GGTTCTTCSEEECCSSCCCC--CG-G-GTTCTTCCE
T ss_pred             ccccccccccccc----ccchhhhhHHhhhhhhhhcccc-----cccccccccccccccccccC--Cc-c-ccCCCCCCE
Confidence            6666655554432    2445556666666665554322     13334566666666665522  22 1 233345666


Q ss_pred             EEccCCcCcCCchHhhhcCCCCCEE
Q 019237          242 LDLAFNSLRGSIPEAFQHMVSLKSL  266 (344)
Q Consensus       242 L~ls~n~l~~~~~~~~~~~~~L~~L  266 (344)
                      |++++|++++ ++ .+..+++|++|
T Consensus       177 L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         177 LDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             EECCCCCCCC-Cc-cccCCCCCCcC
Confidence            6666666552 32 34455555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-16  Score=132.03  Aligned_cols=213  Identities=15%  Similarity=0.134  Sum_probs=151.3

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEcc
Q 019237           87 RHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS  166 (344)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~  166 (344)
                      +.++.++..++.  +|+.+.  +++++|++++|++....+..|.++++|++|++++|.+........+..+++++++.+.
T Consensus        11 ~~i~c~~~~l~~--iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTE--IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSS--CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCC--cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            466777777765  665542  5899999999988766666789999999999999988764333567789999999986


Q ss_pred             c-cccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhh-ccCCccEEEc
Q 019237          167 Y-INLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN-LSRNILVLDL  244 (344)
Q Consensus       167 ~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l  244 (344)
                      . +.+.....  ..+..+++|+++++.++.+.....  ......+..+..+...++.+.  .+....+. ....++.|++
T Consensus        87 ~~n~l~~~~~--~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~~l~~l~~~~~~n~~l~--~i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1          87 KANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIH--TIERNSFVGLSFESVILWL  160 (242)
T ss_dssp             CCTTCCEECT--TSEECCTTCCEEEEESCCCCSCCC--CTTTCBSSCEEEEEESCTTCC--EECTTSSTTSBSSCEEEEC
T ss_pred             cccccccccc--ccccccccccccccchhhhccccc--ccccccccccccccccccccc--cccccccccccccceeeec
Confidence            5 44444332  357889999999999999876554  333444567777777777662  33333333 3347899999


Q ss_pred             cCCcCcCCchHhhhcCCCCCEE-EccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhccC
Q 019237          245 AFNSLRGSIPEAFQHMVSLKSL-HLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG  310 (344)
Q Consensus       245 s~n~l~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  310 (344)
                      ++|.++...+..+ ...++.++ ++.+|+++...+..+.++++|++|+|++|+++...+..+.+++.
T Consensus       161 ~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         161 NKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             CSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             ccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcc
Confidence            9999984444444 44555555 56778888433456889999999999999999544445555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.57  E-value=9.1e-14  Score=121.67  Aligned_cols=238  Identities=23%  Similarity=0.247  Sum_probs=131.4

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL  132 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l  132 (344)
                      ++++||++++        +++ .+|..   +++|++|++++|.++.  +|..   ..+|+.|++++|.+.. ++. +  .
T Consensus        39 ~l~~LdLs~~--------~L~-~lp~~---~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~l~~n~l~~-l~~-l--p   97 (353)
T d1jl5a_          39 QAHELELNNL--------GLS-SLPEL---PPHLESLVASCNSLTE--LPEL---PQSLKSLLVDNNNLKA-LSD-L--P   97 (353)
T ss_dssp             TCSEEECTTS--------CCS-CCCSC---CTTCSEEECCSSCCSS--CCCC---CTTCCEEECCSSCCSC-CCS-C--C
T ss_pred             CCCEEEeCCC--------CCC-CCCCC---CCCCCEEECCCCCCcc--cccc---hhhhhhhhhhhcccch-hhh-h--c
Confidence            4667777776        443 34432   3467777777777764  4543   3466777777665442 221 1  1


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH----------------HHHhhcccCcEEEecCCCC
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF----------------QVVAKLRSLKTLVLRSCAL  196 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------------~~l~~~~~L~~L~l~~~~~  196 (344)
                      +.|++|++++|.+...+.   ...+++|++|+++++.+.......                ..+..++.++.+.+..+..
T Consensus        98 ~~L~~L~L~~n~l~~lp~---~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKLPE---LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             TTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccc---hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            346777777776665442   345666777776666544331100                1234455666666666544


Q ss_pred             CCCCCc---------------hhhccccCCcccEEEcCCCCCCCCCCcchh----------------hhccCCccEEEcc
Q 019237          197 PPINPS---------------FIWHFNLSTSIETLDLSDNNLPSSSVYPWL----------------FNLSRNILVLDLA  245 (344)
Q Consensus       197 ~~~~~~---------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~L~~L~ls  245 (344)
                      ......               .......++.|+.+++++|....  ++...                ......+...++.
T Consensus       175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~  252 (353)
T d1jl5a_         175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT--LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS  252 (353)
T ss_dssp             SSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence            332110               01122334667777777665421  11100                0111223333333


Q ss_pred             CCcCcC----------------CchHhhhcCCCCCEEEccCCccCCCccccccCCCCCCEEeCCCCcCccccchHHhhcc
Q 019237          246 FNSLRG----------------SIPEAFQHMVSLKSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLS  309 (344)
Q Consensus       246 ~n~l~~----------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  309 (344)
                      .+.+.+                .+......+++|++|++++|+++ .+|..   +++|+.|+|++|+++ .+|+....+.
T Consensus       253 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~~~~L~  327 (353)
T d1jl5a_         253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPELPQNLK  327 (353)
T ss_dssp             SSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCCCTTCC
T ss_pred             cccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccccCCCC
Confidence            322221                00111123578999999999988 67753   578999999999998 6676666666


Q ss_pred             C-cccccccccccc
Q 019237          310 G-GCTMNSLEGVLE  322 (344)
Q Consensus       310 ~-~l~~n~l~~~~~  322 (344)
                      . ++++|++.. +|
T Consensus       328 ~L~L~~N~L~~-lp  340 (353)
T d1jl5a_         328 QLHVEYNPLRE-FP  340 (353)
T ss_dssp             EEECCSSCCSS-CC
T ss_pred             EEECcCCcCCC-CC
Confidence            6 899999874 55

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=9.6e-16  Score=134.67  Aligned_cols=142  Identities=22%  Similarity=0.252  Sum_probs=57.8

Q ss_pred             CCCCCEEEccccccCCC--CchHHHHhhcccCcEEEecCCCCCCCCC--chhhccccCCcccEEEcCCCCCCCCC--Ccc
Q 019237          157 LSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLRSCALPPINP--SFIWHFNLSTSIETLDLSDNNLPSSS--VYP  230 (344)
Q Consensus       157 ~~~L~~L~l~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~  230 (344)
                      .+.|+.+.++++.+...  ..+...+..++.|++|++++|.+.....  .....+...++|+.|++++|.++...  ...
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34555555555544332  1122334444555555555554432110  00112233345555555555442100  011


Q ss_pred             hhhhccCCccEEEccCCcCcCCc----hHhhhc--CCCCCEEEccCCccCCC----cccccc-CCCCCCEEeCCCCcCc
Q 019237          231 WLFNLSRNILVLDLAFNSLRGSI----PEAFQH--MVSLKSLHLTDNELEGG----IPKFFG-NMCSLNRLFLPHNKLS  298 (344)
Q Consensus       231 ~~~~~~~~L~~L~ls~n~l~~~~----~~~~~~--~~~L~~L~l~~n~~~~~----~~~~l~-~l~~L~~L~L~~n~l~  298 (344)
                      ......++|++|++++|.+++..    ...+..  .+.|++|++++|+++..    +...+. ++++|+.|+|++|.+.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            11223334555555555554321    122221  23455555555554421    122221 3445555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=2.4e-15  Score=132.11  Aligned_cols=248  Identities=17%  Similarity=0.180  Sum_probs=169.0

Q ss_pred             ccchhhhcCCCCCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCcCCCc----------CCcccccCCCCcEEEcc
Q 019237           75 TISPALLKLHDLRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGTSLLK----------VPRPFQYLSGLVYLRLE  141 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~----------~~~~~~~l~~L~~L~ls  141 (344)
                      .+...+.+...|+.|++++|.+...+   +...+...++|+.++++++.....          +...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            45667888899999999999875532   334566789999999987644321          12234567899999999


Q ss_pred             CCCCCCCCch---hhhhcCCCCCEEEccccccCCCC--chHHH---------HhhcccCcEEEecCCCCCCCCCc-hhhc
Q 019237          142 NSNLFSLGSL---EWLSHLSSLRHLDLSYINLTKSS--DWFQV---------VAKLRSLKTLVLRSCALPPINPS-FIWH  206 (344)
Q Consensus       142 ~~~l~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~--~~~~~---------l~~~~~L~~L~l~~~~~~~~~~~-~~~~  206 (344)
                      +|.+......   ..+...++|++|++++|.+....  .+...         ....+.|+.+.++++.+...... +...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            9998765432   34567899999999999764321  11111         23457899999999887643321 1223


Q ss_pred             cccCCcccEEEcCCCCCCCCCC---cchhhhccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCCcc-
Q 019237          207 FNLSTSIETLDLSDNNLPSSSV---YPWLFNLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGGIP-  278 (344)
Q Consensus       207 ~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~-  278 (344)
                      +...+.|+.|++++|.+....+   ........++|++|++++|.++..    +...+..+++|++|++++|.+++... 
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            3445789999999998843111   122334556899999999998743    45567889999999999999886322 


Q ss_pred             ---cccc--CCCCCCEEeCCCCcCccccchHHhh-----ccC----cccccccccccc
Q 019237          279 ---KFFG--NMCSLNRLFLPHNKLSGELSEMIQN-----LSG----GCTMNSLEGVLE  322 (344)
Q Consensus       279 ---~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~----~l~~n~l~~~~~  322 (344)
                         ..+.  ..+.|++|++++|.++......+..     .+.    ++++|++...-.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~  319 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  319 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcch
Confidence               2333  3478999999999998654333322     222    889999865443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=2.7e-14  Score=114.51  Aligned_cols=111  Identities=26%  Similarity=0.325  Sum_probs=62.6

Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLK  264 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  264 (344)
                      ++++|++++|.++....  ...|..+++|++|++++|.+  ..+++..+...++|++|++++|+++...+.+|.++++|+
T Consensus        30 ~l~~L~Ls~N~i~~~~~--~~~f~~l~~L~~L~L~~N~i--~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          30 HTTELLLNDNELGRISS--DGLFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCCCSBCC--SCSGGGCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCEEEeCCCCCccccc--ccccCCCceEeeeecccccc--ccccccccccccccceeeeccccccccCHHHHhCCCccc
Confidence            34444444444433221  12334445566666666655  233444444455666666666666655555666666667


Q ss_pred             EEEccCCccCCCccccccCCCCCCEEeCCCCcCcc
Q 019237          265 SLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLSG  299 (344)
Q Consensus       265 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  299 (344)
                      +|+|++|++++..+.+|..+++|++++|++|.+..
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccCCccccccCHHHhcCCccccccccccccccc
Confidence            77777776665445556666677777777666653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=7.5e-13  Score=115.70  Aligned_cols=229  Identities=21%  Similarity=0.223  Sum_probs=148.4

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEE
Q 019237           84 HDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHL  163 (344)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L  163 (344)
                      .++++|+++++.++.  +|+.   .++|++|++++|++. .+|..   ..+|++|++++|.++..+.     -.+.|++|
T Consensus        38 ~~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~-----lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD-----LPPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS-----CCTTCCEE
T ss_pred             cCCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh-----hccccccc
Confidence            368999999999976  6654   578999999988776 56754   4589999999999886652     13579999


Q ss_pred             EccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCch---------------hhccccCCcccEEEcCCCCCCCC--
Q 019237          164 DLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSF---------------IWHFNLSTSIETLDLSDNNLPSS--  226 (344)
Q Consensus       164 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------------~~~~~~~~~L~~L~l~~n~l~~~--  226 (344)
                      ++++|.+...+.    ...+++|++|++.++.+...+...               ...+..++.++.+.+..+.....  
T Consensus       104 ~L~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         104 GVSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             ECCSSCCSSCCC----CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             cccccccccccc----hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccc
Confidence            999999887653    467899999999988766443210               11233445677777776654210  


Q ss_pred             ---------------CCcchhhhccCCccEEEccCCcCcCCchHhh-----------------hcCCCCCEEEccCCccC
Q 019237          227 ---------------SVYPWLFNLSRNILVLDLAFNSLRGSIPEAF-----------------QHMVSLKSLHLTDNELE  274 (344)
Q Consensus       227 ---------------~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-----------------~~~~~L~~L~l~~n~~~  274 (344)
                                     ...+. ...++.++.+++++|.... ++...                 ...+.+...++..+.+.
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence                           00111 1234578888888876652 22111                 11123333443333222


Q ss_pred             C----------------CccccccCCCCCCEEeCCCCcCccccchHHhhccC-cccccccccccccccccccccccCCCC
Q 019237          275 G----------------GIPKFFGNMCSLNRLFLPHNKLSGELSEMIQNLSG-GCTMNSLEGVLEIIKSHRAGRKSMRPL  337 (344)
Q Consensus       275 ~----------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~l~~n~l~~~~~~~~~~~~~~~~l~~L  337 (344)
                      +                .++.....+++|++|+|++|.++ .+|..+..+.. ++++|+|+. +|.         .+++|
T Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~L~~-l~~---------~~~~L  326 (353)
T d1jl5a_         258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAE-VPE---------LPQNL  326 (353)
T ss_dssp             EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCC---------CCTTC
T ss_pred             ccccccchhcccccccCccccccccCCCCCEEECCCCccC-ccccccCCCCEEECCCCcCCc-ccc---------ccCCC
Confidence            1                11111233578999999999998 67777777777 999999974 442         24567


Q ss_pred             cceEec
Q 019237          338 DWIAIA  343 (344)
Q Consensus       338 ~~l~l~  343 (344)
                      +.|+++
T Consensus       327 ~~L~L~  332 (353)
T d1jl5a_         327 KQLHVE  332 (353)
T ss_dssp             CEEECC
T ss_pred             CEEECc
Confidence            777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=8.9e-15  Score=117.36  Aligned_cols=162  Identities=19%  Similarity=0.192  Sum_probs=109.5

Q ss_pred             ccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhh
Q 019237           75 TISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWL  154 (344)
Q Consensus        75 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l  154 (344)
                      .+|..+.  +++++|+|++|.|+.......|..+++|++|++++|.+....+..+..+++|++|++++|.+..++. ..+
T Consensus        22 ~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~-~~F   98 (192)
T d1w8aa_          22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMF   98 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSS
T ss_pred             ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH-HHH
Confidence            3454432  5788888888888754245667788888888888888888888888888888888888888886654 567


Q ss_pred             hcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchhhh
Q 019237          155 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN  234 (344)
Q Consensus       155 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  234 (344)
                      ..+++|++|+|++|.+....+  ..+..+++|++|++++|.+......  ..+.  ..++.+.+..+.+.. ..+.    
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~l~L~~N~~~~~~~~--~~~~--~~l~~~~l~~~~~~c-~~p~----  167 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFNCNCHL--AWFA--EWLRKKSLNGGAARC-GAPS----  167 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECTTCCBCCSGGG--HHHH--HHHHHHCCSGGGCBB-CSST----
T ss_pred             hCCCcccccccCCccccccCH--HHhcCCcccccccccccccccccch--HHHh--hhhhhhcccCCCeEe-CCCh----
Confidence            788888888888888877654  4567788888888888877654331  1111  234444455554421 2222    


Q ss_pred             ccCCccEEEccCCcCc
Q 019237          235 LSRNILVLDLAFNSLR  250 (344)
Q Consensus       235 ~~~~L~~L~ls~n~l~  250 (344)
                      ....++.++++.+.++
T Consensus       168 ~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         168 KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             TTTTSBGGGSCTTTCC
T ss_pred             hhcCCEeeecCHhhCc
Confidence            1224555566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.1e-13  Score=102.27  Aligned_cols=121  Identities=25%  Similarity=0.242  Sum_probs=82.1

Q ss_pred             EEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCC
Q 019237           55 KVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG  134 (344)
Q Consensus        55 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~  134 (344)
                      |+|++++|        .++ .++ .+..++.|++|++++|.++.  +|+.++.+++|+.|++++|.+... | .+..+++
T Consensus         1 R~L~Ls~n--------~l~-~l~-~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~   66 (124)
T d1dcea3           1 RVLHLAHK--------DLT-VLC-HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV-D-GVANLPR   66 (124)
T ss_dssp             SEEECTTS--------CCS-SCC-CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSS
T ss_pred             CEEEcCCC--------CCC-CCc-ccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccccc-C-ccccccc
Confidence            35777777        444 233 36777788888888888865  666677788888888887776643 3 4777788


Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH-HHHhhcccCcEE
Q 019237          135 LVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTL  189 (344)
Q Consensus       135 L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L  189 (344)
                      |++|++++|.+...+....+..+++|++|++++|.+....... .....+|+|+.|
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8888888888776665556777778888888887776543221 234455666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.5e-14  Score=108.76  Aligned_cols=126  Identities=25%  Similarity=0.221  Sum_probs=63.5

Q ss_pred             cEEEEEcCCCCcccccCcccccccchhhhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccC
Q 019237           53 HVKVLNLRRSDDENARGKVLKGTISPALLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL  132 (344)
Q Consensus        53 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l  132 (344)
                      .++.|||++|        .++. ++..+..+++|++|++++|.+..  + +.+..+++|++|++++|.+....+..+..+
T Consensus        19 ~lr~L~L~~n--------~I~~-i~~~~~~l~~L~~L~Ls~N~i~~--l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          19 RDRELDLRGY--------KIPV-IENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             SCEEEECTTS--------CCCS-CCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             cCcEEECCCC--------CCCc-cCccccccccCCEEECCCCCCCc--c-CCcccCcchhhhhcccccccCCCccccccc
Confidence            3555666665        2221 23333445556666666665543  2 234555566666666555544333334455


Q ss_pred             CCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchH-HHHhhcccCcEEE
Q 019237          133 SGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLV  190 (344)
Q Consensus       133 ~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~  190 (344)
                      ++|++|++++|.+...+....+..+++|++|++++|.+...+.+. ..+..+++|+.|+
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            566666666665554443344555555666666555554443211 2344455555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.2e-14  Score=110.53  Aligned_cols=132  Identities=19%  Similarity=0.200  Sum_probs=84.2

Q ss_pred             hhcCCCCCEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCC
Q 019237           80 LLKLHDLRHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSS  159 (344)
Q Consensus        80 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~  159 (344)
                      +.+...+++|++++|.|+.  ++..+..+++|++|++++|.+...  +.+..+++|++|++++|.+...+. ..+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~-~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCc-cccccccc
Confidence            5566778888888888876  555556788888888888876643  246777888888888888776543 33456777


Q ss_pred             CCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEE
Q 019237          160 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLD  217 (344)
Q Consensus       160 L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  217 (344)
                      |++|++++|.+.....+ ..+..+++|++|++.+|.+...+.-....+..+++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccc-cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777777777655331 2455666666666666665443321011233345555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.6e-15  Score=136.30  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             CCCEEeCCCCCCCCCC---ccccccCCCCCcEEEccCCcC
Q 019237           85 DLRHLDLSNNHFGGSP---VPEFIGSLSRLRYLNLSCGTS  121 (344)
Q Consensus        85 ~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~  121 (344)
                      .|++|++++|.++...   ++..+..+++|++|++++|.+
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            5666666666654432   223445566666666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.5e-13  Score=101.61  Aligned_cols=104  Identities=22%  Similarity=0.214  Sum_probs=73.0

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEcc
Q 019237           87 RHLDLSNNHFGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLS  166 (344)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~  166 (344)
                      ++|++++|.++.  ++ .+..+++|++|++++|.+. .+|..+..+++|++|++++|.++..+   .+..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~---~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC---ccccccccCeEECC
Confidence            468888888875  43 3677888888888877765 45667777888888888888877553   36677777777777


Q ss_pred             ccccCCCCchHHHHhhcccCcEEEecCCCCCC
Q 019237          167 YINLTKSSDWFQVVAKLRSLKTLVLRSCALPP  198 (344)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  198 (344)
                      +|.+.....+ ..+..+++|+.|++++|.+..
T Consensus        74 ~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSSTT-GGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCCc-hhhcCCCCCCEEECCCCcCCc
Confidence            7777665431 245666667777776666544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.9e-15  Score=135.17  Aligned_cols=83  Identities=17%  Similarity=0.159  Sum_probs=50.4

Q ss_pred             CCccEEEccCCcCcCCc----hHhhhcCCCCCEEEccCCccCCC----cccccc-CCCCCCEEeCCCCcCcccc----ch
Q 019237          237 RNILVLDLAFNSLRGSI----PEAFQHMVSLKSLHLTDNELEGG----IPKFFG-NMCSLNRLFLPHNKLSGEL----SE  303 (344)
Q Consensus       237 ~~L~~L~ls~n~l~~~~----~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~-~l~~L~~L~L~~n~l~~~~----~~  303 (344)
                      ..|+.+++++|.++...    ...+...++|++|+|++|++++.    ++..+. ..+.|+.|+|++|.+++..    ++
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            35677777777665432    22334556788888888877642    233332 3567888888888887543    23


Q ss_pred             HHhhccC----ccccccccc
Q 019237          304 MIQNLSG----GCTMNSLEG  319 (344)
Q Consensus       304 ~~~~l~~----~l~~n~l~~  319 (344)
                      .+...++    ++++|+|+.
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCH
T ss_pred             HHhcCCCCCEEECCCCcCCH
Confidence            3333333    788887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.1e-12  Score=105.30  Aligned_cols=126  Identities=24%  Similarity=0.270  Sum_probs=64.8

Q ss_pred             hhhcCCCCCEEEccccccCCCCchHHHHhhcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCCCCCCCcchh
Q 019237          153 WLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNLPSSSVYPWL  232 (344)
Q Consensus       153 ~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  232 (344)
                      .+..+++|++|++++|.+....    .+..+++|+.|++++|.+...+.    ....+++|++|++++|.+.  .+ +.+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~----~l~~l~~L~~L~Ls~N~i~~i~~----~~~~~~~L~~L~l~~N~i~--~l-~~~  111 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIKKIEN----LDAVADTLEELWISYNQIA--SL-SGI  111 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC----CHHHHTTCCEEECCEEEECSCSS----HHHHHHHCCEEECSEEECC--CH-HHH
T ss_pred             HHhcccccceeECcccCCCCcc----cccCCccccChhhcccccccccc----ccccccccccccccccccc--cc-ccc
Confidence            3455555555555555555432    24455555555555555544332    1112245666666666552  22 222


Q ss_pred             hhccCCccEEEccCCcCcCCch--HhhhcCCCCCEEEccCCccCCCccc----------cccCCCCCCEEe
Q 019237          233 FNLSRNILVLDLAFNSLRGSIP--EAFQHMVSLKSLHLTDNELEGGIPK----------FFGNMCSLNRLF  291 (344)
Q Consensus       233 ~~~~~~L~~L~ls~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~----------~l~~l~~L~~L~  291 (344)
                       ..+++|+.|++++|.++ .++  ..+..+++|+.|++++|++....+.          .+..+|+|+.||
T Consensus       112 -~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 -EKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -HHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             -cccccccccccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence             23335666666666665 332  3456666677777777665432221          134566777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=6.7e-13  Score=106.53  Aligned_cols=86  Identities=17%  Similarity=0.211  Sum_probs=34.7

Q ss_pred             cccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhhhcCCCCCEEEccccccCCCCchHHHHhhc
Q 019237          104 FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL  183 (344)
Q Consensus       104 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  183 (344)
                      .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+...+  .....+++|++|++++|.+...    ..+..+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~--~~~~~~~~L~~L~l~~N~i~~l----~~~~~l  114 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIE--NLDAVADTLEELWISYNQIASL----SGIEKL  114 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCS--SHHHHHHHCCEEECSEEECCCH----HHHHHH
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccccc--cccccccccccccccccccccc----cccccc
Confidence            33444444444444443332 11 2334444444444444444332  1122233444444444444332    123444


Q ss_pred             ccCcEEEecCCCCC
Q 019237          184 RSLKTLVLRSCALP  197 (344)
Q Consensus       184 ~~L~~L~l~~~~~~  197 (344)
                      ++|+.|++++|.+.
T Consensus       115 ~~L~~L~L~~N~i~  128 (198)
T d1m9la_         115 VNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHSSEEEESEEECC
T ss_pred             ccccccccccchhc
Confidence            44444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.1e-10  Score=85.26  Aligned_cols=107  Identities=21%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             cCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCC-CCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCC
Q 019237          185 SLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNN-LPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSL  263 (344)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L  263 (344)
                      ....+...++.+...+.    .+..+++|++|++.++. +  ..+.+..+..+++|+.|++++|+++...+..|..+++|
T Consensus         9 ~~~~l~c~~~~~~~~p~----~l~~l~~l~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLH----HLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             SSSCEECCSSCCCTTTT----TSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             CCCeEEecCCCCccCcc----cccCccccCeeecCCCccc--cccCchhhccccccCcceeeccccCCcccccccccccc
Confidence            34556666666655443    24445788899997664 6  35666666777799999999999996668889999999


Q ss_pred             CEEEccCCccCCCccccccCCCCCCEEeCCCCcCc
Q 019237          264 KSLHLTDNELEGGIPKFFGNMCSLNRLFLPHNKLS  298 (344)
Q Consensus       264 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  298 (344)
                      ++|+|++|+++ .+|.......+|+.|+|++|.+.
T Consensus        83 ~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            99999999999 55554444567999999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.1e-09  Score=83.87  Aligned_cols=93  Identities=24%  Similarity=0.174  Sum_probs=55.7

Q ss_pred             cchhhhcCCCCCEEeCCCCC-CCCCCccccccCCCCCcEEEccCCcCCCcCCcccccCCCCcEEEccCCCCCCCCchhhh
Q 019237           76 ISPALLKLHDLRHLDLSNNH-FGGSPVPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLRLENSNLFSLGSLEWL  154 (344)
Q Consensus        76 ~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~l  154 (344)
                      +|..+..+++|++|++.++. ++.. -+..|..+++|+.|++++|.+....+..|..+++|++|+|++|.++..+. ..+
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~  100 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KTV  100 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TTT
T ss_pred             CcccccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccCh-hhh
Confidence            45556666677777775543 5543 33456666777777777666666666666666677777777776665542 222


Q ss_pred             hcCCCCCEEEccccccC
Q 019237          155 SHLSSLRHLDLSYINLT  171 (344)
Q Consensus       155 ~~~~~L~~L~l~~~~~~  171 (344)
                       ...+|++|++++|.+.
T Consensus       101 -~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3         101 -QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             -CSCCCCEEECCSSCCC
T ss_pred             -ccccccccccCCCccc
Confidence             3335666666666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.3e-07  Score=70.98  Aligned_cols=41  Identities=22%  Similarity=0.257  Sum_probs=17.6

Q ss_pred             hcccCcEEEecCCCCCCCCCchhhccccCCcccEEEcCCCCC
Q 019237          182 KLRSLKTLVLRSCALPPINPSFIWHFNLSTSIETLDLSDNNL  223 (344)
Q Consensus       182 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  223 (344)
                      .+++|++|++++|.++...+- ...+..+++|+.|++++|.+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~-~~~~~~l~~L~~L~Ls~N~i  103 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDM-SSIVQKAPNLKILNLSGNEL  103 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGG-GTHHHHSTTCCCCCCTTSCC
T ss_pred             hCCCCCEeeCCCccccCCchh-HHHHhhCCcccccccccCcc
Confidence            444555555555554443220 11122334445555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.6e-07  Score=67.67  Aligned_cols=82  Identities=22%  Similarity=0.193  Sum_probs=41.1

Q ss_pred             CCcccEEEcCCCCCCCCCCcchhhhccCCccEEEccCCcCcCCchHhhhcCCCCCEEEccCCccCCCcc-------cccc
Q 019237          210 STSIETLDLSDNNLPSSSVYPWLFNLSRNILVLDLAFNSLRGSIPEAFQHMVSLKSLHLTDNELEGGIP-------KFFG  282 (344)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-------~~l~  282 (344)
                      +++|++|++++|.++...........+++|+.|++++|.++...+..+.....|+.|++++|.++....       ..+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            456666666666663322222333444566666666666663222222233456666666666653222       1234


Q ss_pred             CCCCCCEEe
Q 019237          283 NMCSLNRLF  291 (344)
Q Consensus       283 ~l~~L~~L~  291 (344)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            456666553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.01  E-value=2.4e-06  Score=65.47  Aligned_cols=87  Identities=11%  Similarity=0.011  Sum_probs=36.1

Q ss_pred             CCCCCEEeCCCC-CCCCCC---ccccccCCCCCcEEEccCCcCCCcCC----cccccCCCCcEEEccCCCCCCCCch---
Q 019237           83 LHDLRHLDLSNN-HFGGSP---VPEFIGSLSRLRYLNLSCGTSLLKVP----RPFQYLSGLVYLRLENSNLFSLGSL---  151 (344)
Q Consensus        83 l~~L~~L~l~~~-~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~~L~~L~ls~~~l~~~~~~---  151 (344)
                      .+.|++|+|+++ .+....   +...+...++|+.|++++|.+.....    ..+...+.|++|++++|.+......   
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666543 233221   11223344555555555554432111    1222334455555555544432211   


Q ss_pred             hhhhcCCCCCEEEccccc
Q 019237          152 EWLSHLSSLRHLDLSYIN  169 (344)
Q Consensus       152 ~~l~~~~~L~~L~l~~~~  169 (344)
                      ..+...++|++|++++|.
T Consensus        94 ~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHTTTTCCCSEEECCCCS
T ss_pred             HHHHhCCcCCEEECCCCc
Confidence            223333445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=4.7e-06  Score=63.72  Aligned_cols=66  Identities=15%  Similarity=0.217  Sum_probs=26.9

Q ss_pred             CCCCCEEEccccccCCC--CchHHHHhhcccCcEEEecCCCCCCCCC-chhhccccCCcccEEEcCCCC
Q 019237          157 LSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLRSCALPPINP-SFIWHFNLSTSIETLDLSDNN  222 (344)
Q Consensus       157 ~~~L~~L~l~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~  222 (344)
                      .++|++|++++|.+...  ..+...+...+.|++|++++|.+..... .+...+...++|++|++++|.
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34444444444443321  2223344444455555555554433211 011122333455555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.68  E-value=6.1e-06  Score=63.00  Aligned_cols=118  Identities=17%  Similarity=0.120  Sum_probs=53.6

Q ss_pred             cchhhhcCCCCCEEeCCC-CCCCCCC---ccccccCCCCCcEEEccCCcCCCcCC----cccccCCCCcEEEccCCCCCC
Q 019237           76 ISPALLKLHDLRHLDLSN-NHFGGSP---VPEFIGSLSRLRYLNLSCGTSLLKVP----RPFQYLSGLVYLRLENSNLFS  147 (344)
Q Consensus        76 ~~~~~~~l~~L~~L~l~~-~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~~L~~L~ls~~~l~~  147 (344)
                      +.....+.+.|++|++++ +.++...   +...+...++|++|++++|.+.....    ..+.....++.+++++|.+..
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            333344556777777766 3444332   22233455666666666665443211    222334555666665555543


Q ss_pred             CCch---hhhhcCCCCCEEEcc--ccccCCC--CchHHHHhhcccCcEEEecC
Q 019237          148 LGSL---EWLSHLSSLRHLDLS--YINLTKS--SDWFQVVAKLRSLKTLVLRS  193 (344)
Q Consensus       148 ~~~~---~~l~~~~~L~~L~l~--~~~~~~~--~~~~~~l~~~~~L~~L~l~~  193 (344)
                      ....   ..+...++|+.++|.  .|.+...  ..+...+..+++|++|++..
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            2211   233444555544443  2222221  12223344455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.54  E-value=1.4e-05  Score=60.89  Aligned_cols=97  Identities=18%  Similarity=0.238  Sum_probs=65.4

Q ss_pred             ccCCcccEEEcCCC-CCCCCCCcchh---hhccCCccEEEccCCcCcCC----chHhhhcCCCCCEEEccCCccCCC---
Q 019237          208 NLSTSIETLDLSDN-NLPSSSVYPWL---FNLSRNILVLDLAFNSLRGS----IPEAFQHMVSLKSLHLTDNELEGG---  276 (344)
Q Consensus       208 ~~~~~L~~L~l~~n-~l~~~~~~~~~---~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~---  276 (344)
                      ...++|++|+++++ .++. .....+   ....+.|++|++++|.++..    +...+...+.++.+++++|.+...   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~-~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCH-HHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            44589999999974 5643 222222   23446899999999988753    345667788999999999988753   


Q ss_pred             -ccccccCCCCCCEEeC--CCCcCccccchHH
Q 019237          277 -IPKFFGNMCSLNRLFL--PHNKLSGELSEMI  305 (344)
Q Consensus       277 -~~~~l~~l~~L~~L~L--~~n~l~~~~~~~~  305 (344)
                       +...+...++|+.++|  ++|.+.......+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence             3355677888987666  4567765443333