Citrus Sinensis ID: 019275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MDSVFTTNPCPISKTRISARSFYYHLHFLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQNNENRLF
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccEEEEcccccEEEEEEEccccEEEEccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEccccccEEEEEEccccccccccccccccEEEEEEcccccccccHHHHHccccEEEcccccccEEEEcccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHEEEEEccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHcccccccEEEcccccccccccccccccEEEEccccEEEEEcccccEEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEcccccccccEEEcccccccccccccccccEEEEEEcccccccccHHHHcccccEcccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mdsvfttnpcpisktrisarSFYYHLHFLMLPLVFAFCsittssqaspcrtscgdipinypfgiddgcgnpyyrhmlvcsdygklelrtpsgrypvrsisysdphilladpfmwncqdgdnfrptrpfsldtsthfslstqndylffncseenviieprpifcerfpercdsscdsssylcrhlpecasalhgssccayypKATESLRLMLKYCASYTSVYwrnvgnvppydqipeygirvdfdipvttaclqcqdmtkgggtcgfhtetqnflclcpkgnatsyckdheisghsragvIAGTVTGVSAAGAIGIGAGVWYFRKVratepvtcgvqnnenrlf
Flexible Loop (DISEMBL)
mdsvfttnpcpisktrISARSFYYHLHFLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRatepvtcgvqnnenrlf
Low Complexity Region (SEG)
MDSVFTTNPCPISKTRISARSFYYHLHFLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPERcdsscdsssYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRagviagtvtgvsaagaigigagvWYFRKVRATEPVTCGVQNNENRLF
Disordered region (IsUnstruct)
*********CPISKTRISARSFYYHLHFLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGV********
Disordered Region (DISOPRED)
**SV***NPCPISKTRISARSFYYHLHFLMLPLVFAFCSITT**********CGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCK*****GHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRA****************
Disordered Region (DISEMBL)
MDSVFTTNPCPISKTRISARSFYYHLHFLMLPLVFAFCSITT********TSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQNNENRLF
Disordered Region (DISPRO)
**SVFTTNPCPISKTRISARSFYYHLHFLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQNN*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSVFTTNPCPISKTRISARSFYYHLHFLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQNNENRLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
Q9LMN7	733	Wall-associated receptor	no	no	0.134	0.062	0.448	0.0003

>sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 26 LHFLMLPLVFAFCSITTSSQASP---CRTSCGDIPINYPFGIDDGCGNP 71
          +H L L  +F + + T   +A P   C+T CGD+PI+YPFGI  GC  P
Sbjct: 3  VHSLFLMAIFFYLAYTQLVKAQPRDDCQTRCGDVPIDYPFGISTGCYYP 51

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
225444293	339	PREDICTED: uncharacterized protein LOC10	0.944	0.955	0.779	1e-150
255554811	340	conserved hypothetical protein [Ricinus	0.915	0.923	0.794	1e-141
356557927	326	PREDICTED: uncharacterized protein LOC10	0.860	0.904	0.756	1e-135
357480359	333	hypothetical protein MTR_4g132450 [Medic	0.889	0.915	0.719	1e-133
224113711	311	predicted protein [Populus trichocarpa]	0.889	0.980	0.764	1e-132
224117942	334	predicted protein [Populus trichocarpa]	0.935	0.961	0.735	1e-132
356520081	318	PREDICTED: uncharacterized protein LOC10	0.883	0.952	0.743	1e-130
356564482	327	PREDICTED: uncharacterized protein LOC10	0.874	0.917	0.747	1e-129
449454897	323	PREDICTED: uncharacterized protein LOC10	0.921	0.978	0.661	1e-124
449515684	451	PREDICTED: uncharacterized LOC101211130	0.860	0.654	0.694	1e-122

>gi|225444293|ref|XP_002263584.1| PREDICTED: uncharacterized protein LOC100250418 [Vitis vinifera] gi|302144103|emb|CBI23208.3| unnamed protein product [Vitis vinifera]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/326 (77%), Positives = 286/326 (87%), Gaps = 2/326 (0%)

Query: 19  ARSFYYHLHFLML-PLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHML 77
           + SF YHL FL+L PL+F F ++T ++QAS CRTSCG IPINYPFGIDDGCG+PYYRH+L
Sbjct: 15  SSSFAYHLFFLILTPLIFPFLTLT-AAQASLCRTSCGGIPINYPFGIDDGCGSPYYRHIL 73

Query: 78  VCSDYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFS 137
           VC D G+LELRTPSGRYPVRS+SYSDPHIL++DPFMWNCQDGD FRPTRPFSLDTSTHFS
Sbjct: 74  VCPDSGQLELRTPSGRYPVRSLSYSDPHILVSDPFMWNCQDGDAFRPTRPFSLDTSTHFS 133

Query: 138 LSTQNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCC 197
           LS QNDYLFFNCSE++VI+EP+PIFCERFP+RCDSSCDS+SYLCRHLPECASAL GSSCC
Sbjct: 134 LSPQNDYLFFNCSEDDVIVEPKPIFCERFPDRCDSSCDSASYLCRHLPECASALGGSSCC 193

Query: 198 AYYPKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDM 257
           +YYPKATESLRLMLKYCASYTSVYWR+ G  PP DQIPEYG+RVDFDIPVTT CLQCQD 
Sbjct: 194 SYYPKATESLRLMLKYCASYTSVYWRSSGGNPPDDQIPEYGVRVDFDIPVTTRCLQCQDT 253

Query: 258 TKGGGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRAGVIAGTVTGVSAAGAIGIGA 317
           TKGGGTCGF T+TQ+FLCLC +GN T+YCKD  +  + R GVIAGT T VS AG +GI A
Sbjct: 254 TKGGGTCGFDTQTQDFLCLCEQGNTTTYCKDLVVRHNKRIGVIAGTATAVSFAGVVGIAA 313

Query: 318 GVWYFRKVRATEPVTCGVQNNENRLF 343
           G+WY  K+R   PV CGVQ+NENRLF
Sbjct: 314 GIWYLIKLRKKAPVACGVQSNENRLF 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554811|ref|XP_002518443.1| conserved hypothetical protein [Ricinus communis] gi|223542288|gb|EEF43830.1| conserved hypothetical protein [Ricinus communis]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/317 (79%), Positives = 285/317 (89%), Gaps = 3/317 (0%)

Query: 28  FLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLEL 87
           F+ML  + +F S+TT+ QAS CRT CG IPINYPFGIDDGCG+PYYRHMLVCSD G LE 
Sbjct: 26  FIMLNTLPSF-SLTTA-QASHCRTFCGTIPINYPFGIDDGCGSPYYRHMLVCSDSGNLEF 83

Query: 88  RTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFF 147
           RTPSGRY V SISYSDPHI++ADPFMWNCQDG +FR TRPFSLDTSTHF+LS+QNDYLFF
Sbjct: 84  RTPSGRYQVHSISYSDPHIIVADPFMWNCQDGSHFRATRPFSLDTSTHFTLSSQNDYLFF 143

Query: 148 NCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESL 207
           NCSEENVI+EP+PIFCERFP++CDS+CDS+SYLCRHLP CA+AL GSSCC+YYPKATESL
Sbjct: 144 NCSEENVIVEPKPIFCERFPDQCDSTCDSASYLCRHLPGCATALGGSSCCSYYPKATESL 203

Query: 208 RLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFH 267
           RLMLKYCASYTS+YWRN G   PYDQ+PEYGIR+DFDIPVTT CL+CQDMTKGGGTCGF 
Sbjct: 204 RLMLKYCASYTSIYWRNNGANSPYDQVPEYGIRIDFDIPVTTHCLECQDMTKGGGTCGFD 263

Query: 268 TETQNFLCLCPKGNATSYCKDHEIS-GHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVR 326
           T++QNFLCLC + N T+YCKDH  S  HSRAGVIAGT+TGVSAAGA+GIGAG+WY++KVR
Sbjct: 264 TQSQNFLCLCNERNVTTYCKDHGTSRQHSRAGVIAGTLTGVSAAGALGIGAGMWYWKKVR 323

Query: 327 ATEPVTCGVQNNENRLF 343
           A  PVTCGVQ+NENRLF
Sbjct: 324 AKAPVTCGVQSNENRLF 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557927|ref|XP_003547261.1| PREDICTED: uncharacterized protein LOC100798581 [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/296 (75%), Positives = 262/296 (88%), Gaps = 1/296 (0%)

Query: 49  CRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILL 108
           CRTSCGDIPI YPFGIDDGCG+PYYRH+L CS+ GKLELRTPSGRYPVR++SYSDPH+++
Sbjct: 31  CRTSCGDIPIKYPFGIDDGCGSPYYRHILQCSNSGKLELRTPSGRYPVRNLSYSDPHVVV 90

Query: 109 ADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPE 168
            DPFMW+C+DG+ FRPTRPFSLDT+THF LS QN+Y+FFNCS+++VII+P+P+FCE FPE
Sbjct: 91  TDPFMWSCEDGEKFRPTRPFSLDTATHFKLSPQNEYMFFNCSQDSVIIQPKPMFCEHFPE 150

Query: 169 RCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNV 228
            CDSSCDS+SYLCRHLP C+ AL  S+CC+YYPKATESLRLMLKYCASY SVYW+NVG  
Sbjct: 151 HCDSSCDSASYLCRHLPGCSFALPRSTCCSYYPKATESLRLMLKYCASYASVYWKNVGAP 210

Query: 229 PPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCKD 288
            PYDQ+PEYGIRVDFDIPVTT CLQCQD  KGGGTCGF T+ Q+F+CLC  GN+T++CKD
Sbjct: 211 MPYDQVPEYGIRVDFDIPVTTRCLQCQDPLKGGGTCGFDTQNQSFICLCKDGNSTTHCKD 270

Query: 289 HEISGHS-RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQNNENRLF 343
           ++I+ H+ R  VIAGTVTGVS AGA GIGA VWY +KVRA  PVTCGVQ+NENRLF
Sbjct: 271 YDIARHNRRVHVIAGTVTGVSVAGAFGIGAAVWYLKKVRAKAPVTCGVQSNENRLF 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480359|ref|XP_003610465.1| hypothetical protein MTR_4g132450 [Medicago truncatula] gi|357497989|ref|XP_003619283.1| hypothetical protein MTR_6g045690 [Medicago truncatula] gi|355494298|gb|AES75501.1| hypothetical protein MTR_6g045690 [Medicago truncatula] gi|355511520|gb|AES92662.1| hypothetical protein MTR_4g132450 [Medicago truncatula]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/307 (71%), Positives = 261/307 (85%), Gaps = 2/307 (0%)

Query: 39  SITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRS 98
           SI T SQ++ CRTSCG IPI YPF IDDGCG+PYYR +L CSD  KLELRTPSGRYP+ +
Sbjct: 27  SILTKSQSTLCRTSCGSIPIQYPFSIDDGCGSPYYRFILSCSDTQKLELRTPSGRYPIHN 86

Query: 99  ISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEP 158
           +SY DPHI++ DPFMWNC+DG N+RPTRPFSLDTST F LS+QN Y+FFNCSEE VI++P
Sbjct: 87  VSYIDPHIVVTDPFMWNCEDGVNYRPTRPFSLDTSTRFKLSSQNQYIFFNCSEEKVIVKP 146

Query: 159 RPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYT 218
           +P+FCE+FPE CDSSCDS+SYLCRHLPEC+ A+ GSSCC+Y PKATESLRLML+YC SY 
Sbjct: 147 KPVFCEQFPEHCDSSCDSASYLCRHLPECSFAMSGSSCCSYKPKATESLRLMLEYCTSYA 206

Query: 219 SVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTK-GGGTCGFHTETQNFLCLC 277
           SVYWRNVG    YDQ+P+YGIR+DFDIPVTT CLQCQD +K GGGTCGF T+TQ+FLCLC
Sbjct: 207 SVYWRNVGAPQLYDQVPQYGIRIDFDIPVTTRCLQCQDQSKGGGGTCGFDTQTQSFLCLC 266

Query: 278 PKGNATSYCKDHEISGHSR-AGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQ 336
            +GN T++C DHE + HSR   VIAGTVT +SA GA+GIG G+WY +K++A  PVTCGVQ
Sbjct: 267 KEGNFTTHCNDHENARHSRNVHVIAGTVTAISAFGALGIGGGIWYLKKMKAKAPVTCGVQ 326

Query: 337 NNENRLF 343
           +NENRLF
Sbjct: 327 SNENRLF 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113711|ref|XP_002316549.1| predicted protein [Populus trichocarpa] gi|222859614|gb|EEE97161.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/306 (76%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 39  SITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRS 98
           S  +S  AS CRTSCG IPINYPFGIDDGCG+PYYRHML+CSD G LELRTPSGRY VRS
Sbjct: 6   SSRSSQAASHCRTSCGTIPINYPFGIDDGCGSPYYRHMLLCSDSGILELRTPSGRYQVRS 65

Query: 99  ISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEP 158
           ISYSDPH+++ DPFMW C+DG +FR TR FSLDTSTH +LS+QNDYLFFNCSEE VI+EP
Sbjct: 66  ISYSDPHMIVTDPFMWKCKDGHHFRATRAFSLDTSTHLTLSSQNDYLFFNCSEEKVIVEP 125

Query: 159 RPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYT 218
           +PIFCERFP+RCDS+CDS+SYLCRHLP C +AL G SCC+Y+PKATESLRLMLKYCASYT
Sbjct: 126 KPIFCERFPDRCDSTCDSASYLCRHLPGCGAALGGRSCCSYFPKATESLRLMLKYCASYT 185

Query: 219 SVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLC- 277
           S+YWR  G   P D +PEYGIRVDFDIPVTT CLQCQDM KGGG CGF T++QNFLCLC 
Sbjct: 186 SIYWRINGANAPDDHVPEYGIRVDFDIPVTTDCLQCQDMKKGGGRCGFDTQSQNFLCLCN 245

Query: 278 PKGNATSYCKDHEISGHSRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQN 337
            + N T+YC DH  S HS+AG+IAGTVTGVSAAGA+GIGAG+WY++KVRA+ PVTCGVQ+
Sbjct: 246 QRSNVTTYCNDHSSSSHSKAGIIAGTVTGVSAAGALGIGAGLWYWKKVRASAPVTCGVQS 305

Query: 338 NENRLF 343
           NENRLF
Sbjct: 306 NENRLF 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117942|ref|XP_002331517.1| predicted protein [Populus trichocarpa] gi|222873741|gb|EEF10872.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/325 (73%), Positives = 278/325 (85%), Gaps = 4/325 (1%)

Query: 22  FYYHLHFLMLPLV-FAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCS 80
           F++    L + L+ F +  +T +  A  CRTSCG IPI+YPFGIDDGCG+PYYRH+LVCS
Sbjct: 11  FHHSFCLLFIILISFPYFFLTKAQAAGHCRTSCGTIPISYPFGIDDGCGSPYYRHILVCS 70

Query: 81  DYGKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLST 140
           D G LELRTPSGRY VRSISYSDPH+++ DPFMW+CQDG +FR TRPFSLDTSTH +LS+
Sbjct: 71  DSGFLELRTPSGRYQVRSISYSDPHMIVTDPFMWSCQDGHHFRATRPFSLDTSTHLTLSS 130

Query: 141 QNDYLFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYY 200
           QNDYLFFNCSEE VI++P+PIFCERFP+RCDS+CDS+SYLCRHLP CA+AL GSSCC+Y 
Sbjct: 131 QNDYLFFNCSEERVIVQPKPIFCERFPDRCDSTCDSASYLCRHLPGCATALGGSSCCSYL 190

Query: 201 PKATESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKG 260
           PKATESLRLMLKYCASY S+YWR   N P  DQ+PEYGIRVDFDIPVTT CLQCQDM KG
Sbjct: 191 PKATESLRLMLKYCASYASIYWRTGVNAPD-DQVPEYGIRVDFDIPVTTDCLQCQDMKKG 249

Query: 261 GGTCGFHTETQNFLCLC-PKGNATSYCKDH-EISGHSRAGVIAGTVTGVSAAGAIGIGAG 318
           GG+CGF T++Q+FLCLC  + N T+YC DH   + HS+AGVIAGTVTGVSAAGAIGIGAG
Sbjct: 250 GGSCGFDTQSQSFLCLCNQRSNVTTYCNDHSSTTSHSKAGVIAGTVTGVSAAGAIGIGAG 309

Query: 319 VWYFRKVRATEPVTCGVQNNENRLF 343
           +WY++KVRAT PVTCGVQ+NENRLF
Sbjct: 310 LWYWKKVRATAPVTCGVQSNENRLF 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520081|ref|XP_003528694.1| PREDICTED: uncharacterized protein LOC100795731 [Glycine max]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/304 (74%), Positives = 270/304 (88%), Gaps = 1/304 (0%)

Query: 41  TTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSIS 100
           TT +Q++PCRTSCGDIPI YPFGIDDGCG+PYYR++LVCSD GKL++RTPSGRY V ++S
Sbjct: 15  TTRAQSTPCRTSCGDIPIEYPFGIDDGCGSPYYRYILVCSDSGKLQVRTPSGRYHVHNVS 74

Query: 101 YSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRP 160
           Y+DPHIL+ DPFMWNC DG+N+RPTRPFSLDTST F LS QN+YLFFNCSE++VI++P+P
Sbjct: 75  YADPHILVTDPFMWNCDDGENYRPTRPFSLDTSTRFKLSPQNEYLFFNCSEDHVIVKPKP 134

Query: 161 IFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSV 220
           IFCERFPERCDSSCDS SYLCRH+P C+ A+ GSSCC+Y P++ ESLRLMLKYC SYTSV
Sbjct: 135 IFCERFPERCDSSCDSGSYLCRHMPGCSFAMTGSSCCSYSPRSIESLRLMLKYCTSYTSV 194

Query: 221 YWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKG 280
           YWRNVG   P+DQ+PEYGIR+DFDIPVTT CLQCQD +KGGGTCGF T+TQ+F+CLC +G
Sbjct: 195 YWRNVGAPQPHDQVPEYGIRIDFDIPVTTRCLQCQDPSKGGGTCGFDTQTQSFMCLCKEG 254

Query: 281 NATSYCKDHEISGHSR-AGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQNNE 339
           N T++CKD++ + H+R   VIAGTV+GVSAAGA GIGAG+WY +KVRA  PVTCGVQ+NE
Sbjct: 255 NFTTHCKDYDAARHNRKVHVIAGTVSGVSAAGAFGIGAGIWYLKKVRAKAPVTCGVQSNE 314

Query: 340 NRLF 343
           NRLF
Sbjct: 315 NRLF 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564482|ref|XP_003550483.1| PREDICTED: uncharacterized protein LOC100808021 [Glycine max]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/301 (74%), Positives = 266/301 (88%), Gaps = 1/301 (0%)

Query: 44  SQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSD 103
           +Q++PCRTSCGDIPI YPFGIDDGCG+PYYR++LVCSD GKL++RTPSGRY V ++SY+D
Sbjct: 27  TQSTPCRTSCGDIPIEYPFGIDDGCGSPYYRYILVCSDSGKLQVRTPSGRYNVHNVSYAD 86

Query: 104 PHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFC 163
           PHIL+ DPFMWNC DG+N+RPTRPFSLDTST F LS  N+YLFFNCSE++VI++P+PIFC
Sbjct: 87  PHILITDPFMWNCDDGENYRPTRPFSLDTSTRFKLSPHNEYLFFNCSEDHVIVKPKPIFC 146

Query: 164 ERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWR 223
           ERFPERCDSSCDS SYLCRH+P C+ A+ GSSCC+Y P+ATESLRLMLKYC SYTSVYWR
Sbjct: 147 ERFPERCDSSCDSGSYLCRHMPGCSFAMSGSSCCSYSPRATESLRLMLKYCTSYTSVYWR 206

Query: 224 NVGNVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNAT 283
           NVG   PYDQ+PEYGIR+DFDIPVT  CLQCQD  KGGGTCGF T TQ+F+CLC +GN+T
Sbjct: 207 NVGAPQPYDQVPEYGIRIDFDIPVTRRCLQCQDPYKGGGTCGFDTGTQSFMCLCKEGNST 266

Query: 284 SYCKDHEISGHSR-AGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQNNENRL 342
           ++CKD++ + H+R   VIAGTV+GVSAAGA GIGAG+WY +KVRA  PVTCGVQ+NENRL
Sbjct: 267 THCKDYDATRHNRKVHVIAGTVSGVSAAGAFGIGAGIWYLKKVRAKAPVTCGVQSNENRL 326

Query: 343 F 343
           F
Sbjct: 327 F 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454897|ref|XP_004145190.1| PREDICTED: uncharacterized protein LOC101213294 [Cucumis sativus]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 261/322 (81%), Gaps = 6/322 (1%)

Query: 25  HLHFLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGK 84
           H + +++  +F F    T SQ++ CRTSCG I INYPFGIDDGCG+PYYRH+L C+D GK
Sbjct: 5   HYYSVLILTLFLF---ITPSQSTKCRTSCGQIQINYPFGIDDGCGSPYYRHILDCTDSGK 61

Query: 85  LELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDY 144
           LELRTPSGRYP+ SISY++ HI + DP+MWNC DGDNFRPTRPFSLDTSTH SLS+QNDY
Sbjct: 62  LELRTPSGRYPIESISYAERHIKITDPYMWNCDDGDNFRPTRPFSLDTSTHLSLSSQNDY 121

Query: 145 LFFNCSEENVIIEPRPIFCERFPERCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKAT 204
           LFFNCSE+NVI+ P+P+FCERFPERCDSSCDS+SYLCRHLP+C+  L  +SCC+YYPKAT
Sbjct: 122 LFFNCSEDNVIVAPKPMFCERFPERCDSSCDSASYLCRHLPDCSGGLGAASCCSYYPKAT 181

Query: 205 ESLRLMLKYCASYTSVYWRNVGNV-PPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGT 263
           ESLRLMLKYC+SYTSVYW+++G    PYDQ+PEYGIRVDFDIPV+T CL CQDM +GGG+
Sbjct: 182 ESLRLMLKYCSSYTSVYWKSIGAPDQPYDQVPEYGIRVDFDIPVSTRCLHCQDMVRGGGS 241

Query: 264 CGFHTETQNFLCLCPKGNATSYCKDHEISGHSRA-GVIAGT-VTGVSAAGAIGIGAGVWY 321
           CGF T++Q FLCLC + N T++C DH+ S   +   VI+GT     +A   +   A +W+
Sbjct: 242 CGFDTQSQGFLCLCGERNVTTFCGDHDTSQQKKKYVVISGTAAAVSAAGVFVVAAAVIWF 301

Query: 322 FRKVRATEPVTCGVQNNENRLF 343
            R+VRA  PVTCGVQ+N+NRLF
Sbjct: 302 VRRVRAKAPVTCGVQSNDNRLF 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515684|ref|XP_004164878.1| PREDICTED: uncharacterized LOC101211130 [Cucumis sativus]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/298 (69%), Positives = 248/298 (83%), Gaps = 3/298 (1%)

Query: 49  CRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGRYPVRSISYSDPHILL 108
           CRTSCG I INYPFGIDDGCG+PYYRH+L C+D GKLELRTPSGRYP+ SISY++ HI +
Sbjct: 154 CRTSCGQIQINYPFGIDDGCGSPYYRHILDCTDSGKLELRTPSGRYPIESISYAERHIKI 213

Query: 109 ADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRPIFCERFPE 168
            DP+MWNC DGDNFRPTRPFSLDTSTH SLS+QNDYLFFNCSE+NVI+ P+P+FCERFPE
Sbjct: 214 TDPYMWNCDDGDNFRPTRPFSLDTSTHLSLSSQNDYLFFNCSEDNVIVAPKPMFCERFPE 273

Query: 169 RCDSSCDSSSYLCRHLPECASALHGSSCCAYYPKATESLRLMLKYCASYTSVYWRNVGNV 228
           RCDSSCDS+SYLCRHLP+C+  L  +SCC+YYPKATESLRLMLKYC+SYTSVYW+++G  
Sbjct: 274 RCDSSCDSASYLCRHLPDCSGGLGAASCCSYYPKATESLRLMLKYCSSYTSVYWKSIGAP 333

Query: 229 -PPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKGNATSYCK 287
             PYDQ+PEYGIRVDFDIPV+T CL CQDM +GGG+CGF T++Q FLCLC + N T++C 
Sbjct: 334 DQPYDQVPEYGIRVDFDIPVSTRCLHCQDMVRGGGSCGFDTQSQGFLCLCGERNVTTFCG 393

Query: 288 DHEISGHSRA-GVIAGT-VTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQNNENRLF 343
           DH+ S   +   VI+GT     +A   +   A +W+ R+VRA  PVTCGVQ+N+NRLF
Sbjct: 394 DHDTSQQKKKYVVISGTAAAVSAAGVFVVAAAVIWFVRRVRAKAPVTCGVQSNDNRLF 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:505006118	329	AT1G11915 "AT1G11915" [Arabido	0.927	0.966	0.626	1.9e-115
TAIR|locus:2012863	305	AT1G10380 "AT1G10380" [Arabido	0.723	0.813	0.323	1.3e-27
TAIR|locus:2157742	303	AT5G50290 "AT5G50290" [Arabido	0.723	0.818	0.281	1.1e-21
TAIR|locus:2084425	639	AT3G53840 [Arabidopsis thalian	0.682	0.366	0.238	8.2e-06
TAIR|locus:2185118	657	AT5G02070 [Arabidopsis thalian	0.626	0.327	0.248	0.00014
TAIR|locus:2014962	733	WAK5 "wall associated kinase 5	0.134	0.062	0.448	0.00054
TAIR|locus:2014897	741	WAK3 "wall associated kinase 3	0.451	0.209	0.258	0.00078

TAIR|locus:505006118 AT1G11915 "AT1G11915" [Arabidopsis thaliana (taxid:3702)]

 Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
 Identities = 203/324 (62%), Positives = 243/324 (75%)

Query:    25 HLHFLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYG- 83
             ++ F  L +     S TTSSQ++ CR+SCG+IPINYPF IDDGCG+PYYRHML+CSD   
Sbjct:     7 YIIFFSLLMTILLQSSTTSSQSNLCRSSCGNIPINYPFSIDDGCGSPYYRHMLICSDNDT 66

Query:    84 KLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQND 143
             KLELRTPSG+YPV+SISYSDPH+L++DPFMWNCQD DNFRPTR FS+D+STHF++S QND
Sbjct:    67 KLELRTPSGKYPVKSISYSDPHLLVSDPFMWNCQDRDNFRPTRSFSIDSSTHFTVSPQND 126

Query:   144 YLFFNCSEENVIIEPRPIFCERFPERXXXXXXXXXYLCRHLPECASALHGS--SCCAYYP 201
             YLFFNC+ + VI+EP+P+FCERFP+R         YLCRHLPEC SAL GS  SCC+YYP
Sbjct:   127 YLFFNCNTDKVIVEPKPLFCERFPDRCDSSCDSSSYLCRHLPECGSAL-GSRVSCCSYYP 185

Query:   202 KATESLRLMLKYCASYTSVYWRNVG-NVPPYDQIPEYGIRVDFDIPVTTACLQCQDMTKG 260
             KAT+SLRLML+ CA+YTSVYWR+ G    PYDQ PEYGIRVD++ PVT  CL CQ+ TKG
Sbjct:   186 KATQSLRLMLQDCATYTSVYWRSTGVENAPYDQFPEYGIRVDYEFPVTMKCLLCQETTKG 245

Query:   261 GGTCGFHTETQNFLCLCPKGNATSYCKDHEISGHSRXXXXXXXXXXXXXXXXXXXXXXX- 319
             GG CGF+T T++FLCLC +GN T+YCKD  +  H R                        
Sbjct:   246 GGVCGFNTRTRDFLCLCKQGNVTTYCKDPSLVNHKRVGAIAGTVTAVSAAGAIGVAGGVY 305

Query:   320 WYFRKVRATEPVTCGVQNNENRLF 343
             WY RKVRA  PVTCGVQ+NENR+F
Sbjct:   306 WYLRKVRANAPVTCGVQSNENRIF 329

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012863 AT1G10380 "AT1G10380" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 88/272 (32%), Positives = 121/272 (44%)

Query:    28 FLMLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCS-DYGKLE 86
             F +    F F S   SSQA  C+ +CG IPI YP G   GCG+P +   + C  D   L 
Sbjct:    10 FFIFLFSFFFLSSHVSSQA--CQKTCGQIPIKYPLGTGSGCGDPRFTRYITCDPDQQTLT 67

Query:    87 LRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLF 146
             L T +G YP+ S+ Y+   I + DP M  C      RP+  F LD    FS      +  
Sbjct:    68 LTTHTGSYPITSVDYAKQEIYVTDPSMSTCACT---RPSHGFGLDWDAPFSFHDDTVFTL 124

Query:   147 FNCS-EENVIIEPRPIFCERFP--ERXXXXXXXXXYL-CRHLPECASALHGSSCCAYYP- 201
              +CS +E+ +  P      R    +R         Y  CR +      L  S+CC Y P 
Sbjct:   125 LDCSVDESPVFTPLSNGSGRVSLCDRQSSSICTFLYSNCRAIS--LINLQVSTCCVYVPL 182

Query:   202 KATESLRLMLKY--CASYTSVYWRNVGNVPPYDQIPE---YGIRVDFDIPVTTACLQ-CQ 255
                 S  + L    C+SY+  Y  N+G  P  +  PE   YGI + +   V       C 
Sbjct:   183 DLGPSFEMDLNKLKCSSYSGFY--NLG--PGQESHPENWNYGIALKYKFNVFDEYPGVCG 238

Query:   256 DMTKGGGTCGFHTETQNFLCLCPKG-NATSYC 286
                +  G CGF+T++ +F+C CP G N TS C
Sbjct:   239 SCERSNGACGFNTQSSSFVCNCPGGINTTSDC 270

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157742 AT5G50290 "AT5G50290" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 80/284 (28%), Positives = 126/284 (44%)

Query:    30 MLPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRT 89
             +L L+ +F ++        CR+ CG+I ++YPFGI +GCG+P YR +L C +   L    
Sbjct:     3 ILILILSFVTLFEICVVDACRSYCGNITVDYPFGIRNGCGHPGYRDLLFCMN-DVLMFHI 61

Query:    90 PSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDT--STHFSLSTQNDYLFF 147
              SG Y V  I Y+   I L DP M NC+          F  +   + +F+ ++ N ++  
Sbjct:    62 SSGSYRVLDIDYAYQSITLHDPHMSNCETIVLGGKGNGFEAEDWRTPYFNPTSDNVFMLI 121

Query:   148 NCSEENVIIEPRPIFCERFPERXXXXXXXXXYLCRHLPECAS---------ALHGSS--- 195
              CS ++      PIF + FPE+           C     C +          +H  S   
Sbjct:   122 GCSPKS------PIF-QGFPEKKVPCRNISGMSCEEYMSCPAWDMVGYRQPGIHSGSGPP 174

Query:   196 -CCAYYPKATESLRLMLKYCASYTSVYWRNVGNVP---PYDQIPEYGIRVDFDIPVTTAC 251
              CC    ++ +++ L    C  Y+S Y  N+  +    P D    YGIRV +++  + A 
Sbjct:   175 MCCGVGFESVKAINLSKLECEGYSSAY--NLAPLKLRGPSDWA--YGIRVKYELQGSDAF 230

Query:   252 LQCQDMTKGGGTCGFHTETQNFL---CLCPKGNATSYCKDHEIS 292
               C+      GTCG+       L   C+C   N+T+ C D  IS
Sbjct:   231 --CRACVATSGTCGYEPADGGGLRHVCMCDNHNSTTNC-DSVIS 271

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2084425 AT3G53840 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 62/260 (23%), Positives = 98/260 (37%)

Query:    31 LPLVFAFCSITTSSQASPCRTSCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTP 90
             L L+  F S T + +  P   +CG   + YP      CG+P YR  + C +YG L   T 
Sbjct:    13 LSLLIYFSSTTQAFKRCP---NCGSTRVPYPLSTGLDCGDPGYR--IRCDNYGSLWFDTL 67

Query:    91 SGRY-PVRSISYSDPHILLADP-FMWN-CQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFF 147
             +G   P+++I  S    +L  P F  N C   D         LD +  F++S  N  +  
Sbjct:    68 NGSTNPIKTIDPSGQRFVLRPPGFEQNKCVSVDI--KYHGIQLDLNLPFNVSCSNTVIIM 125

Query:   148 NCSEENVIIEPRPIF-CE--RFPERXXXXXXXXXYLCRHLPECASALHGSSCCAYYPKAT 204
             NC+++ +       F C       +           CR +  C     G+S   Y     
Sbjct:   126 NCTKDGLDAYSSQGFNCSDNSLCHKFLNANLEARGNCRGVTSCCWYKTGASVNTY----- 180

Query:   205 ESLRLMLKYCASYTSVYWRNVGNVPPYDQIPEYGIRVDFDIPVTTACLQ---CQDMTKGG 261
             +  R     C++Y S  + N+    P  +  E  + + ++ P    C     C+D+    
Sbjct:   181 KVYRARPDMCSAYQS--FMNLDLTIPVSKWGEPAVEILWEAPREPVCKSQGDCRDLLNS- 237

Query:   262 GTCGFH-TETQNFLCLCPKG 280
               C    T      C C KG
Sbjct:   238 -VCSNDSTNLGQKRCFCKKG 256

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2185118 AT5G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
 Identities = 62/250 (24%), Positives = 100/250 (40%)

Query:    46 ASPCRT-SCGDIPINYPFGIDDGCGNPYYRHMLVCSDYGKLELRTPSGR-YPVRSISYSD 103
             A P R  +CG + + YP      CG+  YR  + C   GKL      G  Y + SI+   
Sbjct:    38 AGPPRCPNCGPMVVPYPLSTGPTCGDQAYR--INCVG-GKLYFGALHGSSYVITSINSVT 94

Query:   104 PHILLADPFMWN---CQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCSEENVIIEPRP 160
               I+L  P + +   C   D  +  +   LD    FS+++ N  L  NCS+   +++  P
Sbjct:    95 QRIVLRPPGLASSVSCISADVSK--QGLELDPHLPFSITSSNTILLLNCSQ--AMLQA-P 149

Query:   161 IFCERFPERXXXXXXXXXYLCRHLPECASALHGSSCCAYYPKATES---LRLMLKYCASY 217
             I C   P           Y+  +   C+ A     CC +    +++   +R+    C +Y
Sbjct:   150 IDCS--P-----TSLCYSYIKNNASPCSKA---PLCCTFRTDGSQTAYTIRINGGGCLAY 199

Query:   218 TSVYWRNVGNV--PPYDQIPEYGIRVDFDIPVTTAC---LQCQDMTKGGGTCGFHTETQN 272
              S    N      PP  + P+ G+ + + +P    C   + C ++  G   C     T  
Sbjct:   200 QSFVGLNPNKEVPPPGKKWPDTGLELQWALPKEPVCKTDVDC-NLLLGKSKC-LPDPTSL 257

Query:   273 FL--CLCPKG 280
              L  C C KG
Sbjct:   258 GLKRCSCKKG 267

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014962 WAK5 "wall associated kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00054, Sum P(2) = 0.00054
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query:    26 LHFLMLPLVFAFCSITTSSQASP---CRTSCGDIPINYPFGIDDGCGNP 71
             +H L L  +F + + T   +A P   C+T CGD+PI+YPFGI  GC  P
Sbjct:     3 VHSLFLMAIFFYLAYTQLVKAQPRDDCQTRCGDVPIDYPFGISTGCYYP 51

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014897 WAK3 "wall associated kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00078, P = 0.00078
 Identities = 45/174 (25%), Positives = 68/174 (39%)

Query:    28 FLMLPLVFAFCSITTSSQASP---CRTSCGDIPINYPFGIDDGCGNPYYRHM-LVCSDYG 83
             FL++    A+  +    Q  P   C+  CG++ I YPFGI  GC  P   +  L C    
Sbjct:     8 FLVVIFFLAYTQLV-KGQHQPREDCKLKCGNVTIEYPFGISTGCYYPGDDNFNLTCVVEE 66

Query:    84 KLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQND 143
             KL L    G   V +IS+S    +L + F   C +  N            + FSLS+ N 
Sbjct:    67 KLLL---FGIIQVTNISHSGHVSVLFERFS-ECYEQKNETNGTALGYQLGSSFSLSSNNK 122

Query:   144 YLFFNCSEENVIIEPRPIFCERFPERXXXXXXXXXYLCRHLPECASALHGSSCC 197
             +    C+  +++          F ++          LC   PE     +G  CC
Sbjct:   123 FTLVGCNALSLL--------STFGKQNYSTGCLS--LCNSQPEANGRCNGVGCC 166


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      343       311   0.00080  116 3  11 22  0.48    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  264 KB (2138 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.94u 0.08s 24.02t   Elapsed:  00:00:01
  Total cpu time:  23.94u 0.08s 24.02t   Elapsed:  00:00:01
  Start:  Sat May 11 06:55:40 2013   End:  Sat May 11 06:55:41 2013

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
pfam13947	106	pfam13947, GUB_WAK_bind, Wall-associated receptor	9e-19

>gnl|CDD|222467 pfam13947, GUB_WAK_bind, Wall-associated receptor kinase galacturonan-binding

 Score = 80.0 bits (198), Expect = 9e-19
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 49  CRTSCGDIPINYPFGIDDGCG-NPYYRHMLVCSD-YGKLELRTPSGRYPVRSISYSDPHI 106
           C   CG++ I YPFGI  GC  +P +   L C++      L   +G Y V SIS ++  +
Sbjct: 4   CPDRCGNVSIPYPFGIGPGCARDPGFE--LTCNNTTSPPRLLLGNGNYEVLSISLANGTV 61

Query: 107 LLADPFMWNCQDGDNFRPTRPFSLDTSTHFSLSTQNDYLFFNCS 150
            + DP   NC +    R            F  S++N ++   C+
Sbjct: 62  RVLDPISSNCYNSSGKRTDNGSLSLGGPFFFSSSRNKFVVVGCN 105

This cysteine-rich GUB_WAK_bind domain is the extracellular part of this serine/threonine kinase that binds to the cell-wall pectins. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
PF13947	106	GUB_WAK_bind: Wall-associated receptor kinase gala	99.89
PF14380	94	WAK_assoc: Wall-associated receptor kinase C-termi	98.92
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	96.55
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	96.07
PF08488	103	WAK: Wall-associated kinase; InterPro: IPR013695 T	95.88
PF15102	146	TMEM154: TMEM154 protein family	94.45
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	94.23
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	93.61
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	88.44
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	88.3
PF12662	24	cEGF: Complement Clr-like EGF-like	87.21
PF12191	129	stn_TNFRSF12A: Tumour necrosis factor receptor stn	86.07
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	85.92
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	83.42
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	80.89
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	80.03

>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding

Probab=99.89  E-value=6e-23  Score=166.19  Aligned_cols=102  Identities=35%  Similarity=0.714  Sum_probs=82.9

Q ss_pred             CCCCCCCCCCccCcCCCCCCCCCCC-CCCCeEEeeCCC-CceeEecCCCcEEEEEEEecCCeEEEecCcccccCCCCCCC
Q 019275           46 ASPCRTSCGDIPINYPFGIDDGCGN-PYYRHMLVCSDY-GKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFR  123 (343)
Q Consensus        46 ~~~C~~~CG~v~I~YPF~i~~~Cg~-p~~gF~L~C~~~-~~~~l~~~~~~~~V~~I~~~~~ti~v~~~~~~~C~~~~~~~  123 (343)
                      +++|+++||+++|+||||++++|++ |  +|+|+|+++ .++.|.+.++.|+|++|+|++++|+|.++..+.|.......
T Consensus         1 ~~~C~~~CGnv~IpYPFgi~~~C~~~~--~F~L~C~~~~~~~~l~l~~~~~~V~~I~~~~~~i~v~~~~~~~~~~~~~~~   78 (106)
T PF13947_consen    1 KPGCPSSCGNVSIPYPFGIGPGCGRDP--GFELTCNNNTSPPKLLLSSGNYEVLSISYENGTIRVSDPISSNCYSSSSSN   78 (106)
T ss_pred             CCCCCCccCCEeecCCCccCCCCCCCC--CcEEECCCCCCCceeEecCCcEEEEEEecCCCEEEEEeccccceecCCCCc
Confidence            4689999999999999999999999 5  999999976 35677777889999999999999999999887776653321


Q ss_pred             C-CcceecCCCCCccccC-CCeEEEEcCCC
Q 019275          124 P-TRPFSLDTSTHFSLST-QNDYLFFNCSE  151 (343)
Q Consensus       124 ~-~~~~~l~~~~pF~~S~-~N~~~~~gC~~  151 (343)
                      . ...++++  .||.+++ .|.++++||++
T Consensus        79 ~~~~~~~~~--~~~~~s~~~N~~~~~GC~t  106 (106)
T PF13947_consen   79 SSNSNLSLN--GPFFFSSSSNKFTVVGCNT  106 (106)
T ss_pred             ccccEEeec--CCceEccCCcEEEEECCCC
Confidence            1 2234444  4888876 89999999974

>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal

Probab=98.92  E-value=5.8e-10  Score=88.28  Aligned_cols=48  Identities=25%  Similarity=0.915  Sum_probs=42.6

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCChhhhhcCCCCceeeccCCCCCeEeeCCCC
Q 019275          229 PPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKG  280 (343)
Q Consensus       229 ~~~~~~~~~gf~L~W~i~~~~~C~~C~~~~~sgg~Cg~~~~~~~~~C~C~~G  280 (343)
                      ..|.++|++||+|+|.+. .++|.+|++   |||+|+|+.+...|.|+|+||
T Consensus        46 ~~~~~~L~~GF~L~w~~~-~~~C~~C~~---SgG~Cgy~~~~~~f~C~C~dg   93 (94)
T PF14380_consen   46 GNYEEVLKKGFELEWNAD-SGDCRECEA---SGGRCGYDSNSEQFTCFCSDG   93 (94)
T ss_pred             hHHHHHHhcCcEEEEeCC-CCcCcChhc---CCCEeCCCCCCceEEEECCCC
Confidence            347888999999999973 469999995   799999999889999999998

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=96.55  E-value=0.0014  Score=55.75  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=15.4

Q ss_pred             ceEEEeehhHHHHHHHHHheeeEE
Q 019275          297 AGVIAGTVTGVSAAGAIGIGAGVW  320 (343)
Q Consensus       297 ~~ii~g~~~g~~~l~~~~~~~~i~  320 (343)
                      ..||+|+++|+++++++++++++|
T Consensus        48 knIVIGvVVGVGg~ill~il~lvf   71 (154)
T PF04478_consen   48 KNIVIGVVVGVGGPILLGILALVF   71 (154)
T ss_pred             ccEEEEEEecccHHHHHHHHHhhe
Confidence            457788888777666655544444

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=96.07  E-value=0.0082  Score=39.48  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=18.6

Q ss_pred             CccceEEEeehhHHHHHHH-HHheeeEEEEeec
Q 019275          294 HSRAGVIAGTVTGVSAAGA-IGIGAGVWYFRKV  325 (343)
Q Consensus       294 ~~~~~ii~g~~~g~~~l~~-~~~~~~i~~~r~r  325 (343)
                      ++...|.+|+++.++++++ ++++.++||+|+|
T Consensus         8 ~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen    8 SNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRKK   40 (40)
T ss_pred             CceEEEEEEEEechHHHHHHHHHHhheEEeccC
Confidence            3446677777776655444 4455556665543

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF08488 WAK: Wall-associated kinase; InterPro: IPR013695 This domain is found together with the eukaryotic protein kinase domain IPR000719 from INTERPRO in plant wall-associated kinases (WAKs) and related proteins

Probab=95.88  E-value=0.015  Score=46.70  Aligned_cols=23  Identities=22%  Similarity=0.593  Sum_probs=16.8

Q ss_pred             CCCCCCcceee-ecCCC-ceeEEee
Q 019275          189 SALHGSSCCAY-YPKAT-ESLRLML  211 (343)
Q Consensus       189 ~~c~g~gCC~~-ip~~~-~~~~~~~  211 (343)
                      ..|+|.+|||+ ||.+. ..+.+.+
T Consensus         2 ~~CsG~~CCQt~iP~~~~qv~~~~i   26 (103)
T PF08488_consen    2 SSCSGIGCCQTSIPSGLLQVFNVTI   26 (103)
T ss_pred             CccCCcceeccCCCCCCceEEEEEe
Confidence            46899999999 99864 4455443

WAKs are serine-threonine kinases which might be involved in signalling to the cytoplasm and are required for cell expansion []. ; GO: 0004674 protein serine/threonine kinase activity, 0016021 integral to membrane

>PF15102 TMEM154: TMEM154 protein family

Probab=94.45  E-value=0.048  Score=46.22  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=20.5

Q ss_pred             eEEEeehhHHHHHHHHH-heeeEEEEeeccccccccccccc
Q 019275          298 GVIAGTVTGVSAAGAIG-IGAGVWYFRKVRATEPVTCGVQN  337 (343)
Q Consensus       298 ~ii~g~~~g~~~l~~~~-~~~~i~~~r~rrk~~~~~~~~~~  337 (343)
                      .|++++...++++|++. ++..+.|||||.|+..+..|.|+
T Consensus        58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gsq~   98 (146)
T PF15102_consen   58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSSQGSQS   98 (146)
T ss_pred             EEEEeHHHHHHHHHHHHHHHheeEEeecccCCCCccccccc
Confidence            34444442233333333 33444567777777766555554

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=94.23  E-value=0.037  Score=45.62  Aligned_cols=30  Identities=20%  Similarity=0.540  Sum_probs=25.3

Q ss_pred             CceeeccCCCCCeEeeCCCCCCCCCCCcCC
Q 019275          261 GGTCGFHTETQNFLCLCPKGNATSYCKDHE  290 (343)
Q Consensus       261 gg~Cg~~~~~~~~~C~C~~Gn~~~gC~~~~  290 (343)
                      ||.|.+-.+-..+.|.|..|+.-..|+..+
T Consensus        55 HG~C~yI~dl~~~~CrC~~GYtGeRCEh~d   84 (139)
T PHA03099         55 HGDCIHARDIDGMYCRCSHGYTGIRCQHVV   84 (139)
T ss_pred             CCEEEeeccCCCceeECCCCccccccccee
Confidence            789999887789999999997766898654

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=93.61  E-value=0.07  Score=42.28  Aligned_cols=12  Identities=42%  Similarity=0.601  Sum_probs=7.5

Q ss_pred             ceEEEeehhHHH
Q 019275          297 AGVIAGTVTGVS  308 (343)
Q Consensus       297 ~~ii~g~~~g~~  308 (343)
                      .+.|+|+++|+.
T Consensus        65 ~gaiagi~vg~~   76 (96)
T PTZ00382         65 TGAIAGISVAVV   76 (96)
T ss_pred             cccEEEEEeehh
Confidence            556777766544

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=88.44  E-value=0.04  Score=35.69  Aligned_cols=29  Identities=14%  Similarity=0.083  Sum_probs=15.1

Q ss_pred             cceEEEeehhHHHHHHHHHheeeEE-EEeec
Q 019275          296 RAGVIAGTVTGVSAAGAIGIGAGVW-YFRKV  325 (343)
Q Consensus       296 ~~~ii~g~~~g~~~l~~~~~~~~i~-~~r~r  325 (343)
                      .+.||+|+++|.+.+++ ++..+.+ |||.|
T Consensus         5 ~IaIIv~V~vg~~iiii-~~~~YaCcykk~~   34 (38)
T PF02439_consen    5 TIAIIVAVVVGMAIIII-CMFYYACCYKKHR   34 (38)
T ss_pred             hhhHHHHHHHHHHHHHH-HHHHHHHHHcccc
Confidence            46677777776544443 3334333 44333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=88.30  E-value=0.022  Score=47.05  Aligned_cols=12  Identities=42%  Similarity=0.750  Sum_probs=6.2

Q ss_pred             cceEEEeehhHH
Q 019275          296 RAGVIAGTVTGV  307 (343)
Q Consensus       296 ~~~ii~g~~~g~  307 (343)
                      .+.||.|+++|+
T Consensus        66 i~~Ii~gv~aGv   77 (122)
T PF01102_consen   66 IIGIIFGVMAGV   77 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             eeehhHHHHHHH
Confidence            355555555543

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=87.21  E-value=0.66  Score=27.11  Aligned_cols=20  Identities=30%  Similarity=0.826  Sum_probs=15.2

Q ss_pred             CeEeeCCCCCC----CCCCCcCCC
Q 019275          272 NFLCLCPKGNA----TSYCKDHEI  291 (343)
Q Consensus       272 ~~~C~C~~Gn~----~~gC~~~~~  291 (343)
                      +|.|.|+.|+.    ...|.||+.
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            48999999943    456998863

>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins

Probab=86.07  E-value=0.21  Score=41.15  Aligned_cols=34  Identities=15%  Similarity=-0.040  Sum_probs=0.4

Q ss_pred             ceEEEeehhHHHHHHHHHheeeEEEEeeccccccc
Q 019275          297 AGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPV  331 (343)
Q Consensus       297 ~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~~~  331 (343)
                      +..|.|.+.++ ++++..+..+++++|.|||+|..
T Consensus        78 ~~pi~~sal~v-~lVl~llsg~lv~rrcrrr~~~t  111 (129)
T PF12191_consen   78 LWPILGSALSV-VLVLALLSGFLVWRRCRRREKFT  111 (129)
T ss_dssp             S----------------------------------
T ss_pred             ehhhhhhHHHH-HHHHHHHHHHHHHhhhhccccCC
Confidence            33344444332 23333344566677777777653

Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=85.92  E-value=0.9  Score=38.86  Aligned_cols=31  Identities=19%  Similarity=0.086  Sum_probs=22.4

Q ss_pred             ccceEEEeehhHHHHHHHHHheeeEEEEeecc
Q 019275          295 SRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVR  326 (343)
Q Consensus       295 ~~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rr  326 (343)
                      -.+++++|+.+ +.+|++++++++++++|||.
T Consensus        50 IVIGvVVGVGg-~ill~il~lvf~~c~r~kkt   80 (154)
T PF04478_consen   50 IVIGVVVGVGG-PILLGILALVFIFCIRRKKT   80 (154)
T ss_pred             EEEEEEecccH-HHHHHHHHhheeEEEecccC
Confidence            45999999876 55677777778888655543

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=83.42  E-value=0.24  Score=44.54  Aligned_cols=41  Identities=12%  Similarity=0.067  Sum_probs=23.0

Q ss_pred             cceEEEeehhHHHHHHHHHheeeEEE-Eeecccccccccccc
Q 019275          296 RAGVIAGTVTGVSAAGAIGIGAGVWY-FRKVRATEPVTCGVQ  336 (343)
Q Consensus       296 ~~~ii~g~~~g~~~l~~~~~~~~i~~-~r~rrk~~~~~~~~~  336 (343)
                      ..+|++|+++|+..++|+++++.+++ .|++..++...+|=|
T Consensus        36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKq   77 (221)
T PF08374_consen   36 YVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQ   77 (221)
T ss_pred             ceeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhccc
Confidence            46778888777666666555555553 233333444444544

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=80.89  E-value=0.51  Score=34.29  Aligned_cols=24  Identities=42%  Similarity=0.308  Sum_probs=0.0

Q ss_pred             ceEEEeehhHHHHHHHHHheeeEEEE
Q 019275          297 AGVIAGTVTGVSAAGAIGIGAGVWYF  322 (343)
Q Consensus       297 ~~ii~g~~~g~~~l~~~~~~~~i~~~  322 (343)
                      +++|+|+++|+  ++.+.++.|++|+
T Consensus        12 aavIaG~Vvgl--l~ailLIlf~iyR   35 (64)
T PF01034_consen   12 AAVIAGGVVGL--LFAILLILFLIYR   35 (64)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            45566655543  2223334455553

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=80.03  E-value=0.51  Score=34.33  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=0.5

Q ss_pred             cceEEEeehhHHHHHHHHHheeeEEEEeeccccc
Q 019275          296 RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATE  329 (343)
Q Consensus       296 ~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~  329 (343)
                      +..+++|+++| +++.++.+++++.+.--|-|++
T Consensus         7 ~~~vlaavIaG-~Vvgll~ailLIlf~iyR~rkk   39 (64)
T PF01034_consen    7 RSEVLAAVIAG-GVVGLLFAILLILFLIYRMRKK   39 (64)
T ss_dssp             -------------------------------S--
T ss_pred             cchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence            34577777765 3466666677777778885554

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	96.65
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	96.24
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	95.12

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=96.65  E-value=7.6e-05  Score=49.31  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=18.5

Q ss_pred             cceEEEeehhHHHHHHHHHheeeEEEEeeccccc
Q 019275          296 RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATE  329 (343)
Q Consensus       296 ~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~  329 (343)
                      ...|++|+++|+++++++.++.+++.+|||+|+|
T Consensus        10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k   43 (44)
T 2ks1_B           10 IPSIATGMVGALLLLLVVALGIGLFMRRRHIVRK   43 (44)
T ss_dssp             SSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred             cceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence            3456667777666655555444444344444444

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=96.24  E-value=9.3e-05  Score=48.81  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=19.3

Q ss_pred             cceEEEeehhHHHHHHHHHheeeEEEEeecccccc
Q 019275          296 RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEP  330 (343)
Q Consensus       296 ~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~~  330 (343)
                      ...|++|+++|+++++++.++.+++.+|||+|+|+
T Consensus         9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr   43 (44)
T 2l2t_A            9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR   43 (44)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred             cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            34466677766666555554444444455555544

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=95.12  E-value=0.0006  Score=44.87  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=17.5

Q ss_pred             cceEEEeehhHHHHHHHHHheeeEEEEeecccc
Q 019275          296 RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRAT  328 (343)
Q Consensus       296 ~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~  328 (343)
                      ....|++.++|+.++++++++.++|.+|||.|+
T Consensus        10 ~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~   42 (44)
T 2jwa_A           10 PLTSIISAVVGILLVVVLGVVFGILIKRRQQKI   42 (44)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhheehhhhhc
Confidence            345566666675555555555555544444433

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	80.88

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.88  E-value=0.65  Score=28.22  Aligned_cols=28  Identities=39%  Similarity=0.882  Sum_probs=23.1

Q ss_pred             CCceeeccCCCCCeEeeCCCCCCCCCCC
Q 019275          260 GGGTCGFHTETQNFLCLCPKGNATSYCK  287 (343)
Q Consensus       260 sgg~Cg~~~~~~~~~C~C~~Gn~~~gC~  287 (343)
                      -||.|.......+|.|.|..|+.-..|.
T Consensus         8 ngG~C~~~~~~~~y~C~C~~g~~G~~Ce   35 (41)
T d1tpga1           8 NGGTCQQALYFSDFVCQCPEGFAGKSCE   35 (41)
T ss_dssp             TTCEEEEESSSSCEEEECCTTCBSSSCC
T ss_pred             CCCEEecCCCCCCeEECCCCCCCCCCcC
Confidence            4899998777789999999997655675