Citrus Sinensis ID: 019280

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
MTNSSPSPLVSPTSSRSVTETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGTDF
cccccccccccccccEEEEEEEEEEEEEEEccEEcccccccccEEEccccccccEEEEEEEEEccccccccccEEEEEEEEcccccccEEEEEEEEEcccccccccEEcccccccccccEEccccccccccccEEEEHHHccccccccccEEEEEEEEEEEEEEccccccccccccccHHHHHHHHHcccccccEEEEcccEEEEEEHHHHHcccHHHHHHHccccccccccEEEccccHHHHHHHHHHEEEccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccc
cccccccccccccccEEEEEEEcEEEEEEEEccEccccccccEEEEcccEEEcccEEEEEEccccccccccccEEEEEEEEccccccEEEEEEEEEEcccccccccccccccccccccccEEccccccccccHEEEHHHHHccccccccEEEEEEEEEEEEEccccccccccEcccccHHHHHHHHHHcccccEEEEEEcccEcHHHHHEHHcccHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHccccccccHccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccc
mtnsspsplvsptssrsvtetvngSHKFVIQGYSLAKgmgigkhiasdnftvggyQWAIYfypdgknpednsAYVSVFIALANEGTDVRALFELTLldqsgkgkhkvhshfdrslesgpytlkyrgsmwgYKRFFRRAMLEtsdylkddclkinctvGVVVSAidcsrlhsiqvpesdigahfgmlldnaessditfdvagekfpAHKLVLaarspifrskfFDELEEDKQEIIISDLEPKVFKAMLHFIYRdtltedvdvdvatpssscmssvsDTLTAKLLAAADRYGLERLRLMCGshlckdisvNSVAKILSLADEHHATELKAVCLRFAAENLAGTDF
mtnsspsplvsptssrsvtetvngSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTDVRALFELTLLdqsgkgkhkvhshfdrslesgpytLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVatpssscmssvsdTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGTDF
MTNsspsplvsptssrsvtETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDtltakllaaaDRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGTDF
************************SHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTDVRALFELTLLDQS******VHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATP***CMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAE*******
******************TETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFD*******EIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGTDF
*********************VNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTDVRALFELTLLDQ************DRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVAT*********SDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGTDF
************TSSRSVTETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTDVRALFELTLLDQS************R*LESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTED***********CMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAG***
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MTNSSPSPLVSPTSSRSVTETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGTDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query343 2.2.26 [Sep-21-2011]
Q9SRV1465 BTB/POZ and MATH domain-c yes no 0.962 0.709 0.750 1e-145
A1L4W5415 BTB/POZ and MATH domain-c no no 0.970 0.802 0.691 1e-142
Q1EBV6410 BTB/POZ and MATH domain-c no no 0.988 0.826 0.723 1e-142
Q9M8J9406 BTB/POZ and MATH domain-c no no 0.965 0.815 0.601 1e-114
O22286408 BTB/POZ and MATH domain-c no no 0.938 0.789 0.576 1e-108
Q8L765407 BTB/POZ and MATH domain-c no no 0.906 0.764 0.595 1e-107
Q6P8B3374 Speckle-type POZ protein yes no 0.839 0.770 0.328 1e-39
Q7ZX06374 Speckle-type POZ protein N/A no 0.839 0.770 0.328 1e-39
Q0IHH9374 Speckle-type POZ protein N/A no 0.839 0.770 0.328 2e-39
Q5NVK7374 Speckle-type POZ protein yes no 0.839 0.770 0.328 3e-39
>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1 Back     alignment and function desciption
 Score =  513 bits (1321), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/333 (75%), Positives = 288/333 (86%), Gaps = 3/333 (0%)

Query: 6   PSPLVSPTSSRSVTETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDG 65
           PSP    T+S SVT+T+NGSH F I+GYSLAKG+GIGKHIASD FTVGGYQWAIYFYPDG
Sbjct: 31  PSP--PTTTSLSVTQTINGSHSFTIKGYSLAKGIGIGKHIASDTFTVGGYQWAIYFYPDG 88

Query: 66  KNPEDNSAYVSVFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYR 125
           KNPEDNSAYVSVFIALA++GTDVRALFEL+LLDQSGKGKHKVHSHFDR+LESGPYTLKYR
Sbjct: 89  KNPEDNSAYVSVFIALASDGTDVRALFELSLLDQSGKGKHKVHSHFDRALESGPYTLKYR 148

Query: 126 GSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGM 185
           GSMWGYKRFFRR MLETSD+LKDDCLKINCTVGVVVS IDC RLHSI VP SDIG+HFGM
Sbjct: 149 GSMWGYKRFFRRLMLETSDFLKDDCLKINCTVGVVVSEIDCPRLHSIHVPASDIGSHFGM 208

Query: 186 LLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKA 245
           LL+N + SDITF+V+GEKF AH+LVLAARSP+F S+F D   E+ ++I ++D+EPKVFKA
Sbjct: 209 LLENEDGSDITFNVSGEKFRAHRLVLAARSPVFESEFLDVTGEEDRDIEVTDMEPKVFKA 268

Query: 246 MLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKD 305
           +LH+IY+D L ED +   ++ SS    S SDTL AKLL AAD+Y L RL LMC S LCKD
Sbjct: 269 LLHYIYKDALIEDAESSSSSGSSV-GPSASDTLAAKLLGAADKYKLPRLSLMCESVLCKD 327

Query: 306 ISVNSVAKILSLADEHHATELKAVCLRFAAENL 338
           ISV+SVA IL+LAD ++A+ LK+VCL+FAAENL
Sbjct: 328 ISVDSVANILALADRYNASALKSVCLKFAAENL 360
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana GN=BPM6 PE=1 SV=1 Back     alignment and function description
>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1 Back     alignment and function description
>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1 Back     alignment and function description
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1 Back     alignment and function description
>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=1 Back     alignment and function description
>sp|Q6P8B3|SPOP_XENTR Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX06|SPOPA_XENLA Speckle-type POZ protein A OS=Xenopus laevis GN=spop-a PE=2 SV=1 Back     alignment and function description
>sp|Q0IHH9|SPOPB_XENLA Speckle-type POZ protein B OS=Xenopus laevis GN=spop-b PE=2 SV=1 Back     alignment and function description
>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
225436081411 PREDICTED: BTB/POZ and MATH domain-conta 0.959 0.800 0.851 1e-163
359479214423 PREDICTED: BTB/POZ and MATH domain-conta 0.959 0.777 0.851 1e-163
296084009405 unnamed protein product [Vitis vinifera] 0.962 0.814 0.849 1e-163
356499261396 PREDICTED: BTB/POZ and MATH domain-conta 0.973 0.843 0.799 1e-157
225439239431 PREDICTED: BTB/POZ and MATH domain-conta 0.973 0.774 0.812 1e-156
357493545407 Speckle-type POZ protein [Medicago trunc 0.941 0.793 0.806 1e-155
255586415397 Speckle-type POZ protein, putative [Rici 0.924 0.798 0.816 1e-154
356553693396 PREDICTED: BTB/POZ and MATH domain-conta 0.967 0.838 0.785 1e-153
222820580403 BTB-POZ and MATH domain protein [Capsicu 0.982 0.836 0.761 1e-152
449462751428 PREDICTED: BTB/POZ and MATH domain-conta 0.979 0.785 0.769 1e-150
>gi|225436081|ref|XP_002277148.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 282/331 (85%), Positives = 306/331 (92%), Gaps = 2/331 (0%)

Query: 9   LVSPTSSRSVTETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNP 68
           + SPTSSRSVTETVNGSHKFVIQGYSLAKGMG+GKHIASDNFTVGGYQWAIYFYPDGKNP
Sbjct: 21  VASPTSSRSVTETVNGSHKFVIQGYSLAKGMGVGKHIASDNFTVGGYQWAIYFYPDGKNP 80

Query: 69  EDNSAYVSVFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM 128
           EDNS YVSVFIALA+EG DVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM
Sbjct: 81  EDNSTYVSVFIALASEGNDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM 140

Query: 129 WGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLD 188
           WGYKRFFRRA+LETSD+LKDDCLKINCTVGVVVSAIDCSRLHSIQVP+SDIGAHFG+LL+
Sbjct: 141 WGYKRFFRRALLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPDSDIGAHFGVLLE 200

Query: 189 NAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLH 248
           N E SD+ FDVAGEKF AHKLVLAARSP+FR++FFD LEED QE++I+DLEPKVFKAMLH
Sbjct: 201 NMEGSDVVFDVAGEKFHAHKLVLAARSPVFRNEFFDRLEEDTQEVVITDLEPKVFKAMLH 260

Query: 249 FIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISV 308
           FIYRD L E  DV++   SS+C SS SDTL  KLLAAAD+YGL RLR MC SH+CKDISV
Sbjct: 261 FIYRDALIE--DVEMVASSSTCASSESDTLMEKLLAAADKYGLARLRRMCESHICKDISV 318

Query: 309 NSVAKILSLADEHHATELKAVCLRFAAENLA 339
           ++VAK L+LAD +HATELKAVCLRFAAENLA
Sbjct: 319 HTVAKTLALADRYHATELKAVCLRFAAENLA 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479214|ref|XP_003632235.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084009|emb|CBI24397.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499261|ref|XP_003518460.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] Back     alignment and taxonomy information
>gi|225439239|ref|XP_002277085.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357493545|ref|XP_003617061.1| Speckle-type POZ protein [Medicago truncatula] gi|355518396|gb|AET00020.1| Speckle-type POZ protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255586415|ref|XP_002533853.1| Speckle-type POZ protein, putative [Ricinus communis] gi|223526202|gb|EEF28528.1| Speckle-type POZ protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356553693|ref|XP_003545187.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] Back     alignment and taxonomy information
>gi|222820580|gb|ACM67640.1| BTB-POZ and MATH domain protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|449462751|ref|XP_004149104.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Cucumis sativus] gi|449508344|ref|XP_004163287.1| PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
TAIR|locus:2079384465 BPM4 "BTB-POZ and MATH domain 0.927 0.683 0.733 2.9e-126
TAIR|locus:2147167410 BPM5 "BTB-POZ and MATH domain 0.932 0.780 0.713 3e-124
TAIR|locus:2080188415 BPM6 "BTB-POZ and MATH domain 0.930 0.768 0.677 4.7e-119
TAIR|locus:2082445406 BPM2 "BTB-POZ and MATH domain 0.915 0.773 0.590 8.2e-99
TAIR|locus:2063953408 BPM3 [Arabidopsis thaliana (ta 0.906 0.762 0.570 1.1e-94
UNIPROTKB|Q0IHH9374 spop-b "Speckle-type POZ prote 0.836 0.767 0.327 9.2e-36
UNIPROTKB|Q6P8B3374 spop "Speckle-type POZ protein 0.836 0.767 0.327 9.2e-36
UNIPROTKB|Q7ZX06374 spop-a "Speckle-type POZ prote 0.836 0.767 0.327 9.2e-36
UNIPROTKB|E1C049374 SPOP "Uncharacterized protein" 0.836 0.767 0.324 1.5e-35
UNIPROTKB|Q0VCW1374 SPOP "Speckle-type POZ protein 0.836 0.767 0.324 1.5e-35
TAIR|locus:2079384 BPM4 "BTB-POZ and MATH domain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 234/319 (73%), Positives = 271/319 (84%)

Query:    20 ETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFI 79
             +T+NGSH F I+GYSLAKG+GIGKHIASD FTVGGYQWAIYFYPDGKNPEDNSAYVSVFI
Sbjct:    43 QTINGSHSFTIKGYSLAKGIGIGKHIASDTFTVGGYQWAIYFYPDGKNPEDNSAYVSVFI 102

Query:    80 ALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAM 139
             ALA++GTDVRALFEL+LLDQSGKGKHKVHSHFDR+LESGPYTLKYRGSMWGYKRFFRR M
Sbjct:   103 ALASDGTDVRALFELSLLDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFRRLM 162

Query:   140 LETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGMLLDNAESSDITFDV 199
             LETSD+LKDDCLKINCTVGVVVS IDC RLHSI VP SDIG+HFGMLL+N + SDITF+V
Sbjct:   163 LETSDFLKDDCLKINCTVGVVVSEIDCPRLHSIHVPASDIGSHFGMLLENEDGSDITFNV 222

Query:   200 AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDV 259
             +GEKF AH+LVLAARSP+F S+F D   E+ ++I ++D+EPKVFKA+LH+IY+D L ED 
Sbjct:   223 SGEKFRAHRLVLAARSPVFESEFLDVTGEEDRDIEVTDMEPKVFKALLHYIYKDALIEDA 282

Query:   260 DVDVATPSSSCMSSVSDXXXXXXXXXXDRYGLERLRLMCGSHLCKDISVNSVAKILSLAD 319
             +   ++  SS   S SD          D+Y L RL LMC S LCKDISV+SVA IL+LAD
Sbjct:   283 ESS-SSSGSSVGPSASDTLAAKLLGAADKYKLPRLSLMCESVLCKDISVDSVANILALAD 341

Query:   320 EHHATELKAVCLRFAAENL 338
              ++A+ LK+VCL+FAAENL
Sbjct:   342 RYNASALKSVCLKFAAENL 360
GO:0005634 "nucleus" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=IEP
GO:0042631 "cellular response to water deprivation" evidence=IEP
GO:0071472 "cellular response to salt stress" evidence=IEP
TAIR|locus:2147167 BPM5 "BTB-POZ and MATH domain 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080188 BPM6 "BTB-POZ and MATH domain 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082445 BPM2 "BTB-POZ and MATH domain 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063953 BPM3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IHH9 spop-b "Speckle-type POZ protein B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P8B3 spop "Speckle-type POZ protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZX06 spop-a "Speckle-type POZ protein A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E1C049 SPOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCW1 SPOP "Speckle-type POZ protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1EBV6BPM5_ARATHNo assigned EC number0.72350.98830.8268nono
Q9SRV1BPM4_ARATHNo assigned EC number0.75070.96200.7096yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017445001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (393 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 1e-27
pfam00651101 pfam00651, BTB, BTB/POZ domain 6e-23
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-21
cd03774139 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP 2e-08
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 3e-08
smart0006195 smart00061, MATH, meprin and TRAF homology 7e-08
pfam00917116 pfam00917, MATH, MATH domain 7e-07
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information 
 Score =  104 bits (262), Expect = 1e-27
 Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 19/139 (13%)

Query: 24  GSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALAN 83
           G H + I  +S  +G    + I S  F VGGY+W I  YP+G     +  Y+S+++ L  
Sbjct: 1   GKHTWKIVNFSELEG----ESIYSPPFEVGGYKWRIRIYPNGDGESGD--YLSLYLELDK 54

Query: 84  EGTD-----VRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRA 138
             +D     VRA F L L++Q+G GK    S               +GS WG+ +F    
Sbjct: 55  GESDLEKWSVRAEFTLKLVNQNG-GKSLSKSFTHVFF-------SEKGSGWGFPKFISWD 106

Query: 139 MLETSDYLKDDCLKINCTV 157
            LE S YL DD L I   V
Sbjct: 107 DLEDSYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 343
PHA02713 557 hypothetical protein; Provisional 99.94
PHA02790 480 Kelch-like protein; Provisional 99.94
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.93
PHA03098 534 kelch-like protein; Provisional 99.92
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.92
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.91
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.9
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.9
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.89
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.89
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.89
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.89
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.89
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.88
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.88
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.88
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.85
KOG4591280 consensus Uncharacterized conserved protein, conta 99.84
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.83
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.81
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.78
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.76
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.74
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.73
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.71
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.68
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.66
smart0006195 MATH meprin and TRAF homology. 99.56
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 99.48
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.33
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.97
KOG2838 401 consensus Uncharacterized conserved protein, conta 98.44
KOG0511516 consensus Ankyrin repeat protein [General function 98.42
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.39
KOG2838401 consensus Uncharacterized conserved protein, conta 98.22
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 98.03
KOG3473112 consensus RNA polymerase II transcription elongati 97.55
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.1
KOG2714 465 consensus SETA binding protein SB1 and related pro 97.05
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.63
KOG0511 516 consensus Ankyrin repeat protein [General function 96.47
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 96.47
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 96.36
KOG0297391 consensus TNF receptor-associated factor [Signal t 96.21
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.08
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 94.92
KOG1778 319 consensus CREB binding protein/P300 and related TA 94.58
KOG2715210 consensus Uncharacterized conserved protein, conta 94.19
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 93.77
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 90.44
KOG2723221 consensus Uncharacterized conserved protein, conta 87.02
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 81.08
KOG3840 438 consensus Uncharaterized conserved protein, contai 80.57
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.94  E-value=9.3e-27  Score=226.36  Aligned_cols=148  Identities=18%  Similarity=0.248  Sum_probs=137.9

Q ss_pred             cccHHHHHHHchhcCCCCcEEEEeC-CeeEEeeehhhhccCHhHHhhcCCccccc--cceEEecCCCHHHHHHHhhhhcc
Q 019280          176 ESDIGAHFGMLLDNAESSDITFDVA-GEKFPAHKLVLAARSPIFRSKFFDELEED--KQEIIISDLEPKVFKAMLHFIYR  252 (343)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~Dv~~~v~-~~~~~~hk~iL~~~S~~F~~~~~~~~~e~--~~~i~l~~~~~~~~~~~L~~iY~  252 (343)
                      ...+++.|.+|+.++.++||+|.|+ |++|+|||.|||++|+||++||.++|+|.  +.+|.|.++++++|+.+|+|+||
T Consensus         9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt   88 (557)
T PHA02713          9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYN   88 (557)
T ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence            3567899999999999999999998 89999999999999999999999999975  78999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHH
Q 019280          253 DTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLR  332 (343)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~  332 (343)
                      +.+  +.++                 +++||.+|++|+++.|++.|++||.+.++.+||+.++..|..+.+..|.+.|.+
T Consensus        89 ~~i--~~~n-----------------v~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~  149 (557)
T PHA02713         89 RHI--SSMN-----------------VIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKR  149 (557)
T ss_pred             CCC--CHHH-----------------HHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHH
Confidence            974  4443                 999999999999999999999999999999999999999999999899999999


Q ss_pred             HHHhcccCCC
Q 019280          333 FAAENLAGTD  342 (343)
Q Consensus       333 ~i~~~~~~v~  342 (343)
                      ||.+||.+|.
T Consensus       150 ~i~~~f~~v~  159 (557)
T PHA02713        150 MLMSNIPTLI  159 (557)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 1e-37
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 6e-24
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 5e-20
2vkp_A109 Crystal Structure Of Btb Domain From Btbd6 Length = 2e-07
2cr2_A159 Solution Structure Of N-Terminal Domain Of Speckle- 4e-06
3hql_A145 Structures Of Spop-Substrate Complexes: Insights In 7e-06
3ivb_A145 Structures Of Spop-Substrate Complexes: Insights In 1e-05
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 166/323 (51%), Gaps = 35/323 (10%)
Query: 20  ETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGG---YQWAIYFYPDGKNPEDNSAYVS 76
           + V  S+ + I  +S  +   +G+ I S  F+ G     +W +   P G + E       
Sbjct: 3   KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 61
Query: 77  VFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFR 136
             + ++   ++VRA F+ ++L+  G+          +++ES       +G  WG+K+F R
Sbjct: 62  YLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIR 113
Query: 137 RAML--ETSDYLKDDCLKINCTVGVVVSAIDCS---RLHSIQVPESDIGAHFGMLLDNAE 191
           R  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  +    G L +N+ 
Sbjct: 114 RGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSR 173
Query: 192 SSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEII-ISDLEPKVFKAMLHFI 250
            +D    VAG++F AHK +LAARSP+F + F  E+EE K+  + I+D+EP+VFK M+ FI
Sbjct: 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI 233
Query: 251 YRDTLTEDVDVDVATPSSSCMSSVSDXXXXXXXXXXDRYGLERLRLMCGSHLCKDISVNS 310
           Y             T  +  +  ++D          D+Y LERL++MC   LC ++SV +
Sbjct: 234 Y-------------TGKAPNLDKMAD----DLLAAADKYALERLKVMCEDALCSNLSVEN 276
Query: 311 VAKILSLADEHHATELKAVCLRF 333
            A+IL LAD H A +LK   + F
Sbjct: 277 AAEILILADLHSADQLKTQAVDF 299
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6 Length = 109 Back     alignment and structure
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type Poz Protein Length = 159 Back     alignment and structure
>pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:spopmathx-Pucsbc1_pep2 Length = 145 Back     alignment and structure
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath- Macroh2asbcpep1 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-111
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 2e-68
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 2e-65
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 2e-38
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 4e-38
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 7e-35
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 5e-31
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 4e-30
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 7e-30
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 1e-27
1d00_A168 Tumor necrosis factor receptor associated protein 2e-26
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-21
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 2e-18
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 6e-16
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 4e-15
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 8e-15
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 9e-15
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 2e-14
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 4e-14
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 6e-14
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-13
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-13
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 4e-13
3b84_A119 Zinc finger and BTB domain-containing protein 48; 1e-12
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 3e-12
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 4e-12
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 7e-12
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 1e-06
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
 Score =  325 bits (835), Expect = e-111
 Identities = 108/330 (32%), Positives = 173/330 (52%), Gaps = 37/330 (11%)

Query: 19  TETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGG---YQWAIYFYPDGKNPEDNSAYV 75
           ++ V  S+ + I  +S  +   +G+ I S  F+ G     +W +   P G + E++  Y+
Sbjct: 2   SKVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYL 59

Query: 76  SVFIALA-NEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRF 134
           S+++ L     ++VRA F+ ++L+  G+           ++ES       +G  WG+K+F
Sbjct: 60  SLYLLLVSCPKSEVRAKFKFSILNAKGEETK--------AMESQRAYRFVQGKDWGFKKF 111

Query: 135 FRRAML--ETSDYLKDDCLKINCTVGVVVSAIDCSRLHS---IQVPESDIGAHFGMLLDN 189
            RR  L  E +  L DD L + C V VV  +++ S  ++   ++VPE  +    G L +N
Sbjct: 112 IRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWEN 171

Query: 190 AESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEE-DKQEIIISDLEPKVFKAMLH 248
           +  +D    VAG++F AHK +LAARSP+F + F  E+EE  K  + I+D+EP+VFK M+ 
Sbjct: 172 SRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC 231

Query: 249 FIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISV 308
           FIY                        D +   LLAAAD+Y LERL++MC   LC ++SV
Sbjct: 232 FIYTGKAPNL-----------------DKMADDLLAAADKYALERLKVMCEDALCSNLSV 274

Query: 309 NSVAKILSLADEHHATELKAVCLRFAAENL 338
            + A+IL LAD H A +LK   + F   + 
Sbjct: 275 ENAAEILILADLHSADQLKTQAVDFINYHA 304
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 100.0
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.97
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 99.96
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 99.94
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.93
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.93
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 99.93
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.93
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.92
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 99.92
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.92
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.92
2vpk_A116 Myoneurin; transcription regulation, transcription 99.92
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 99.92
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.92
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.92
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 99.91
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 99.9
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.9
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 99.9
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.9
1d00_A168 Tumor necrosis factor receptor associated protein 99.9
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.9
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.89
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 99.89
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.87
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.86
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.82
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.48
4gwm_A592 Meprin A subunit beta; mulidomain structure, hydro 99.41
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.21
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.06
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.04
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.68
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.44
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.43
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.41
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.95
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.86
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 97.18
3kvt_A115 Potassium channel protein SHAW; tetramerization do 97.06
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 96.68
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 96.64
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 96.25
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 96.0
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 91.66
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 91.06
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 88.24
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 87.61
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 85.75
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 84.71
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 82.56
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 82.56
2vpk_A116 Myoneurin; transcription regulation, transcription 82.28
3b84_A119 Zinc finger and BTB domain-containing protein 48; 81.32
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 80.13
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=5.5e-59  Score=422.96  Aligned_cols=297  Identities=35%  Similarity=0.652  Sum_probs=251.3

Q ss_pred             cceeceEEEEEEcCccccccCCCCCeEeecccccCCe---eEEEEEEcCCCCCCCCCCeEEEEEEeeC-CCceeEEEEEE
Q 019280           19 TETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGY---QWAIYFYPDGKNPEDNSAYVSVFIALAN-EGTDVRALFEL   94 (343)
Q Consensus        19 ~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~---~W~L~v~p~g~~~~~~~~~lsl~l~~~~-~~w~~~~~~~~   94 (343)
                      +++..++|+|+|+||+.++ .+.|+.+.||+|.+||+   +|+|.+||+|.+. ++++|+|+||.|.+ .+|++.|+|++
T Consensus         2 s~~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~-~~~~~lslyL~~~~~~~~~v~a~~~~   79 (312)
T 3hqi_A            2 SKVVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDE-ESKDYLSLYLLLVSCPKSEVRAKFKF   79 (312)
T ss_dssp             EEEEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECCC-CEEEEEEE
T ss_pred             CceEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEEEEECCCCCc-cCCCcEEEEEEEcCCCCCcEEEEEEE
Confidence            3567899999999999987 46789999999999985   9999999999874 36799999999976 56999999999


Q ss_pred             EEecCCCCCccceecccccccccCCeeecccCcccccccccchhcc--ccCcCCCCCcEEEEEeeeeeeeec---ccCCc
Q 019280           95 TLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDYLKDDCLKINCTVGVVVSAI---DCSRL  169 (343)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L--~~~~yl~~d~l~i~~~v~i~~~~~---~~~~~  169 (343)
                      +|+|++|+.......       ...+.|. ++.+|||++|++|++|  +.++|+.||+++|+|+|.+.....   .....
T Consensus        80 ~l~~~~~~~~~~~~~-------~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~  151 (312)
T 3hqi_A           80 SILNAKGEETKAMES-------QRAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTM  151 (312)
T ss_dssp             EEECTTSCEEEEEEC-------SSCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCC
T ss_pred             EEEeCCCCccccccc-------CCceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccc
Confidence            999998876433211       1345665 3458999999999999  456899999999999999986422   12233


Q ss_pred             cccccCcccHHHHHHHchhcCCCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhh
Q 019280          170 HSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLH  248 (343)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~  248 (343)
                      +.+.+|++.+.+++..++.++.++||+|.|+|++|+|||.|||+|||||++||.++++|+ ..+|.|+++++++|+.+|+
T Consensus       152 ~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~  231 (312)
T 3hqi_A          152 NMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC  231 (312)
T ss_dssp             SSCCCCCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHH
T ss_pred             cccCCCCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHH
Confidence            567788999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             hhccCCCCCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHH
Q 019280          249 FIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKA  328 (343)
Q Consensus       249 ~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~  328 (343)
                      |||++.+++...+                 +.+||.+|++|+++.|+..|+++|.+.++.+|++.++.+|++|++..|++
T Consensus       232 ~iYt~~~~~~~~~-----------------~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~  294 (312)
T 3hqi_A          232 FIYTGKAPNLDKM-----------------ADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT  294 (312)
T ss_dssp             HHHHSCCTTHHHH-----------------HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred             hhcCCCCCChHHH-----------------HHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHH
Confidence            9999998765443                 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCC
Q 019280          329 VCLRFAAENLAGTD  342 (343)
Q Consensus       329 ~~~~~i~~~~~~v~  342 (343)
                      .|++||.+|+.+|.
T Consensus       295 ~~~~~i~~~~~~v~  308 (312)
T 3hqi_A          295 QAVDFINYHATDVL  308 (312)
T ss_dssp             HHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998874
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 343
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 4e-26
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 5e-25
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 5e-25
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 5e-24
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 5e-17
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-16
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 4e-26
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 15/153 (9%)

Query: 20  ETVNGSHKFVIQGYSLAKGM---GIGKHIASDNFTVG--GYQWAIYFYPDGKNPEDNSAY 74
           +  NG + + I  + +            I S  F  G  GY+  +  +      +  + Y
Sbjct: 1   QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANY 60

Query: 75  VSVFIALANEGTD------VRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM 128
           +S+F+       D       +    LT+LDQS     + H     +        +     
Sbjct: 61  ISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPR 120

Query: 129 ----WGYKRFFRRAMLETSDYLKDDCLKINCTV 157
               +GY  F     L    ++KDD L + C V
Sbjct: 121 NPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEV 153
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.92
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.92
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.91
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.91
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.91
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.91
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.84
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.79
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.56
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.56
d1t1da_100 Shaker potassium channel {California sea hare (Apl 97.43
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 95.26
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 94.93
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.62
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 88.78
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 86.53
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 83.17
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=173.18  Aligned_cols=113  Identities=26%  Similarity=0.349  Sum_probs=105.0

Q ss_pred             CcccHHHHHHHchhcCCCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhhhhccC
Q 019280          175 PESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRD  253 (343)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~  253 (343)
                      ....+.+.|.+++.++.++||+|.++|++|+|||+||+++|+||++||.+.+.++ ...+.+++++++.|+.+|+|+|+|
T Consensus         8 h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg   87 (122)
T d1r29a_           8 HASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTS   87 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCC
Confidence            3467889999999999999999999999999999999999999999999999888 666777899999999999999999


Q ss_pred             CCCCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhc
Q 019280          254 TLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCK  304 (343)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~  304 (343)
                      ++.++..+                 +.+++.+|++|+++.|++.|+++|.+
T Consensus        88 ~~~i~~~~-----------------v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          88 RLNLREGN-----------------IMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             CCCCCTTT-----------------HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             eecCchhh-----------------HHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            99887765                 99999999999999999999999965
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure