Citrus Sinensis ID: 019319

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
MRMMKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIKPDTEPVQEKVLLSDC
ccccHHHHHHHHHHHHHcccccccccccEEEEEEEEcccccccccHHHHHHHHHHcccEEEEEccccccccccccEEEEEccccHHHHHHHHHHHHHccccEEcccHHHHHHHccHHHHHHHHHHccccccccccccccEEEEcccccccHHHHHHccccccEEEEccccccccccccEEEEEcccccccccccEEEEEEEccccEEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEccccccccccccHHHHHHHccccccccccccccccccc
ccccccccccccccccccccccccccccEEEEEEEccHHHHHHHcHHHHHHHHHHcccEEEEccccccHHHccccEEEEEEcccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccHHHHHHHHHccccccEEEEEEEEcccccccEEEEEEccccHHcccccEEEEEEEccccEEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccHcccccHcccccHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEcccccccccccccccEEEEccccccccHHHHHHccccc
MRMMKEEIEEQTREEellsfpqtqqqSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAidqnrplsdqgpfdiVLHKLTGKEWRQILEEYRqthpevtvldppyaiqhlHNRQSMLQCVADMnlsnsygkvdvprqlvierdassipdvVLKAgltlplvakplvadgsakshELSLAYDQyslkklepplVLQEFVNHGGVLFKVYIVGEAIKVVrrfslpdvtkqdlstsagvfrfprvscaaasaddadldpcvaelpprplLERLAKELRRQLGLRLFNLDIirehgtrdqfyvidinyfpgevwenagvrahiyrlpikpdtepvqekvllsdc
mrmmkeeiEEQTreeellsfpqtqqqskLVVVGYALTSKKtksflqpkleglaRNKGILFVAIDqnrplsdqGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRfslpdvtkqdlstsagvfrfpRVSCAAasaddadldpCVAELPPRPLLERLAKELRRQLGLrlfnldiirehgtrdqfYVIDINYFPGEVWENAGVRAHIYrlpikpdtepvqekvllsdc
MRMMKeeieeqtreeeLLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCaaasaddadldPCVAelpprpllerlakelrrqlGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIKPDTEPVQEKVLLSDC
***************************KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIK***************
*******************************VGYALTSKKT****QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPD***********V**********************AELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIKPDTEPVQEKVLLS**
*********************QTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIKPDTEPVQEKVLLSDC
*************************QSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC******D*DLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIKPDTEPVQEKVLLSDC
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MRMMKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIKPDTEPVQEKVLLSDC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query343 2.2.26 [Sep-21-2011]
Q9SUG3353 Inositol-tetrakisphosphat yes no 0.825 0.801 0.855 1e-133
O81893391 Inositol-tetrakisphosphat no no 0.819 0.718 0.686 1e-105
Q84Y01342 Inositol-tetrakisphosphat N/A no 0.807 0.809 0.470 3e-69
Q9SBA5319 Inositol-tetrakisphosphat no no 0.807 0.868 0.440 4e-62
Q7ZU91396 Inositol-tetrakisphosphat yes no 0.807 0.699 0.329 2e-36
Q5F480407 Inositol-tetrakisphosphat yes no 0.801 0.675 0.337 4e-36
Q13572414 Inositol-tetrakisphosphat no no 0.807 0.669 0.333 2e-35
Q8BYN3419 Inositol-tetrakisphosphat yes no 0.798 0.653 0.333 7e-35
P0C0T1419 Inositol-tetrakisphosphat yes no 0.798 0.653 0.336 2e-34
Q7SY78396 Inositol-tetrakisphosphat N/A no 0.804 0.696 0.328 2e-34
>sp|Q9SUG3|ITPK2_ARATH Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2 Back     alignment and function desciption
 Score =  474 bits (1219), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/283 (85%), Positives = 263/283 (92%)

Query: 28  KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 87
           K ++VGYALTSKK KSFLQPKLEGLARNKGILFVAIDQN+PLS+QGPFDIVLHK  GKEW
Sbjct: 39  KSIIVGYALTSKKIKSFLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEW 98

Query: 88  RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147
           R+ILEE+R  HP+VTVLDPP AI HL NRQSMLQCVADMNLS+S G+V VP+QLVI++DA
Sbjct: 99  RRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDA 158

Query: 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVL 207
           SSIP+ V  AGL LPLVAKPLVADGSAKSHELSLAYDQ+SL KLEPPLVLQEFVNHGGVL
Sbjct: 159 SSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNHGGVL 218

Query: 208 FKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPR 267
           FKVYIVGEAI+VVRRFSLPDV++++L  SAGVFRFPRVSCAAASADDADLDP +AELPPR
Sbjct: 219 FKVYIVGEAIRVVRRFSLPDVSRRELPKSAGVFRFPRVSCAAASADDADLDPSIAELPPR 278

Query: 268 PLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG 310
           PLLERLAKELRR LGLRLFNLDIIREHGTRD+FYVIDINYFPG
Sbjct: 279 PLLERLAKELRRGLGLRLFNLDIIREHGTRDRFYVIDINYFPG 321
Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 9
>sp|O81893|ITPK3_ARATH Inositol-tetrakisphosphate 1-kinase 3 OS=Arabidopsis thaliana GN=ITPK3 PE=2 SV=3 Back     alignment and function description
>sp|Q84Y01|ITPK1_MAIZE Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SBA5|ITPK1_ARATH Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZU91|ITPK1_DANRE Inositol-tetrakisphosphate 1-kinase OS=Danio rerio GN=itpk1 PE=2 SV=2 Back     alignment and function description
>sp|Q5F480|ITPK1_CHICK Inositol-tetrakisphosphate 1-kinase OS=Gallus gallus GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q13572|ITPK1_HUMAN Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2 Back     alignment and function description
>sp|Q8BYN3|ITPK1_MOUSE Inositol-tetrakisphosphate 1-kinase OS=Mus musculus GN=Itpk1 PE=2 SV=1 Back     alignment and function description
>sp|P0C0T1|ITPK1_BOVIN Inositol-tetrakisphosphate 1-kinase OS=Bos taurus GN=ITPK1 PE=1 SV=1 Back     alignment and function description
>sp|Q7SY78|ITPK1_XENLA Inositol-tetrakisphosphate 1-kinase OS=Xenopus laevis GN=itpk1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
224081885319 predicted protein [Populus trichocarpa] 0.827 0.890 0.880 1e-144
255537904355 Inositol-tetrakisphosphate 1-kinase, put 0.877 0.847 0.841 1e-137
18413088353 inositol-tetrakisphosphate 1-kinase 2 [A 0.825 0.801 0.855 1e-131
5262190338 inositol 1, 3, 4-trisphosphate 5/6-kinas 0.827 0.840 0.852 1e-131
297813275363 predicted protein [Arabidopsis lyrata su 0.819 0.774 0.841 1e-130
351721983354 inositol phosphate kinase [Glycine max] 0.825 0.799 0.848 1e-129
225458958347 PREDICTED: inositol-tetrakisphosphate 1- 0.836 0.827 0.898 1e-129
356507953354 PREDICTED: inositol-tetrakisphosphate 1- 0.825 0.799 0.844 1e-129
302142133315 unnamed protein product [Vitis vinifera] 0.825 0.898 0.908 1e-129
255562182327 Inositol-tetrakisphosphate 1-kinase, put 0.903 0.948 0.727 1e-122
>gi|224081885|ref|XP_002306515.1| predicted protein [Populus trichocarpa] gi|222855964|gb|EEE93511.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/284 (88%), Positives = 268/284 (94%)

Query: 28  KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 87
           K  VVGYALTSKK KSFL+PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW
Sbjct: 1   KFAVVGYALTSKKIKSFLKPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 60

Query: 88  RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147
           RQILE+YR+THPEVTVLDPP AIQHLHNRQSMLQCVADMNLSNSYGKV +P+Q+VI++DA
Sbjct: 61  RQILEDYRRTHPEVTVLDPPDAIQHLHNRQSMLQCVADMNLSNSYGKVGIPKQIVIKKDA 120

Query: 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVL 207
           SSIP  V KAGL LP+VAKPLVADGSAKSHELSLAYDQ SL+KLEPPLVLQEFVNHGGV+
Sbjct: 121 SSIPGAVAKAGLMLPIVAKPLVADGSAKSHELSLAYDQQSLQKLEPPLVLQEFVNHGGVM 180

Query: 208 FKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPR 267
           FKVYIVGE IKVVRRFSLPDV K++LS  AGVFRFPRVSCAAASAD+ADLDP VAELPPR
Sbjct: 181 FKVYIVGETIKVVRRFSLPDVCKRELSNIAGVFRFPRVSCAAASADNADLDPGVAELPPR 240

Query: 268 PLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGE 311
           PLLE+LA+EL R+LGLRLFNLDIIREHGTRD+FYVIDINYFPGE
Sbjct: 241 PLLEKLARELCRRLGLRLFNLDIIREHGTRDRFYVIDINYFPGE 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537904|ref|XP_002510017.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi|223550718|gb|EEF52204.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18413088|ref|NP_567334.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] gi|83288250|sp|Q9SUG3.2|ITPK2_ARATH RecName: Full=Inositol-tetrakisphosphate 1-kinase 2; AltName: Full=Inositol 1,3,4-trisphosphate 5/6-kinase 2; Short=AtItpk-2; Short=Inositol-triphosphate 5/6-kinase 2; Short=Ins(1,3,4)P(3) 5/6-kinase 2 gi|15215758|gb|AAK91424.1| AT4g08170/T12G13_10 [Arabidopsis thaliana] gi|16323320|gb|AAL15415.1| AT4g08170/T12G13_10 [Arabidopsis thaliana] gi|332657201|gb|AEE82601.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5262190|emb|CAB45787.1| inositol 1, 3, 4-trisphosphate 5/6-kinase-like protein [Arabidopsis thaliana] gi|7267457|emb|CAB81153.1| inositol 1, 3, 4-trisphosphate 5/6-kinase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297813275|ref|XP_002874521.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320358|gb|EFH50780.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|351721983|ref|NP_001237484.1| inositol phosphate kinase [Glycine max] gi|156752165|gb|ABU93833.1| inositol phosphate kinase [Glycine max] Back     alignment and taxonomy information
>gi|225458958|ref|XP_002285550.1| PREDICTED: inositol-tetrakisphosphate 1-kinase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507953|ref|XP_003522727.1| PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|302142133|emb|CBI19336.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255562182|ref|XP_002522099.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi|223538698|gb|EEF40299.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
TAIR|locus:2132487353 AT4G08170 [Arabidopsis thalian 0.825 0.801 0.752 4.3e-109
TAIR|locus:2134253391 AT4G33770 [Arabidopsis thalian 0.833 0.731 0.609 3.6e-89
TAIR|locus:2148990319 ITPK1 "inositol (1,3,4) P3 5/6 0.626 0.673 0.456 3.7e-54
UNIPROTKB|Q5F480407 ITPK1 "Inositol-tetrakisphosph 0.603 0.508 0.319 1.4e-31
ZFIN|ZDB-GENE-040426-1953396 itpk1 "inositol 1,3,4-triphosp 0.807 0.699 0.312 8.8e-31
UNIPROTKB|Q13572414 ITPK1 "Inositol-tetrakisphosph 0.562 0.466 0.347 9.9e-31
MGI|MGI:2446159419 Itpk1 "inositol 1,3,4-triphosp 0.562 0.460 0.342 3.4e-30
RGD|1595691421 Itpk1 "inositol-tetrakisphosph 0.562 0.458 0.342 3.8e-30
UNIPROTKB|J9NW00419 ITPK1 "Uncharacterized protein 0.807 0.661 0.306 5e-28
UNIPROTKB|P0C0T1419 ITPK1 "Inositol-tetrakisphosph 0.807 0.661 0.309 6.4e-28
TAIR|locus:2132487 AT4G08170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 213/283 (75%), Positives = 234/283 (82%)

Query:    28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 87
             K ++VGYALTSKK KSFLQPKLEGLARNKGILFVAIDQN+PLS+QGPFDIVLHK  GKEW
Sbjct:    39 KSIIVGYALTSKKIKSFLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEW 98

Query:    88 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147
             R+ILEE+R  HP+VTVLDPP AI HL NRQSMLQCVADMNLS+S G+V VP+QLVI++DA
Sbjct:    99 RRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDA 158

Query:   148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVL 207
             SSIP+ V  AGL LPLVAKPLVADGSAKSHELSLAYDQ+SL KLEPPLVLQEFVNHGGVL
Sbjct:   159 SSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNHGGVL 218

Query:   208 FKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCXXXXXXXXXXXPCVAXXXXX 267
             FKVYIVGEAI+VVRRFSLPDV++++L  SAGVFRFPRVSC           P +A     
Sbjct:   219 FKVYIVGEAIRVVRRFSLPDVSRRELPKSAGVFRFPRVSCAAASADDADLDPSIAELPPR 278

Query:   268 XXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPG 310
                           GLRLFNLDIIREHGTRD+FYVIDINYFPG
Sbjct:   279 PLLERLAKELRRGLGLRLFNLDIIREHGTRDRFYVIDINYFPG 321
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0032957 "inositol trisphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0047325 "inositol tetrakisphosphate 1-kinase activity" evidence=IEA
GO:0052725 "inositol-1,3,4-trisphosphate 6-kinase activity" evidence=IEA
GO:0052726 "inositol-1,3,4-trisphosphate 5-kinase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
TAIR|locus:2134253 AT4G33770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148990 ITPK1 "inositol (1,3,4) P3 5/6-kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F480 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1953 itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q13572 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2446159 Itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1595691 Itpk1 "inositol-tetrakisphosphate 1-kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW00 ITPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0T1 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SUG3ITPK2_ARATH2, ., 7, ., 1, ., 1, 5, 90.85510.82500.8016yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1.1340.979
4th Layer2.7.1.1590.979
3rd Layer2.7.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.4486.1
hypothetical protein (319 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX2631
hypothetical protein (348 aa)
     •••0.900
gw1.XIX.770.1
hypothetical protein (311 aa)
     • •0.899
gw1.III.1387.1
hypothetical protein (309 aa)
     • •0.899
gw1.29.16.1
hypothetical protein (315 aa)
     • •0.899
estExt_fgenesh4_pg.C_LG_V0044
hypothetical protein (396 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
PLN02941328 PLN02941, PLN02941, inositol-tetrakisphosphate 1-k 0.0
pfam05770307 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trispho 1e-168
COG0189318 COG0189, RimK, Glutathione synthase/Ribosomal prot 0.002
>gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase Back     alignment and domain information 
 Score =  555 bits (1433), Expect = 0.0
 Identities = 216/295 (73%), Positives = 245/295 (83%), Gaps = 3/295 (1%)

Query: 19  SFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIV 78
           +   +  Q K  VVGYALT KK KSFLQP LE LAR+KGI  VAID +RPLS+QGPFD++
Sbjct: 11  APLSSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVI 70

Query: 79  LHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 138
           LHKL GKEWRQ LEEYR+ HP+VTVLDPP AIQ LHNRQSMLQ VAD+ LS+ YG V VP
Sbjct: 71  LHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVP 130

Query: 139 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
           +QLV+  D SSIPD V  AGL  PLVAKPLVADGSAKSH++SLAYDQ  L KLEPPLVLQ
Sbjct: 131 KQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQ 190

Query: 199 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-- 256
           EFVNHGGVLFKVY+VG+ +K VRRFSLPDV++++LS++ GV  FPRVS AAASADDAD  
Sbjct: 191 EFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNG 250

Query: 257 -LDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG 310
            LDP VAELPPRP LE LA+ELRR+LGLRLFN D+IREHGT D++YVIDINYFPG
Sbjct: 251 GLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPG 305

Length = 328
>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate 5/6-kinase Back     alignment and domain information
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 343
PF05770307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 100.0
PLN02941328 inositol-tetrakisphosphate 1-kinase 100.0
PRK10446300 ribosomal protein S6 modification protein; Provisi 99.96
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 99.96
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 99.96
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 99.95
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 99.93
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.91
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 99.9
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 99.9
PRK12458338 glutathione synthetase; Provisional 99.89
PRK05246316 glutathione synthetase; Provisional 99.89
PRK14571299 D-alanyl-alanine synthetase A; Provisional 99.87
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 99.87
PRK14570364 D-alanyl-alanine synthetase A; Provisional 99.86
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 99.85
PRK14569296 D-alanyl-alanine synthetase A; Provisional 99.85
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 99.85
PRK14016 727 cyanophycin synthetase; Provisional 99.84
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 99.84
PRK14572347 D-alanyl-alanine synthetase A; Provisional 99.83
KOG1057 1018 consensus Arp2/3 complex-interacting protein VIP1/ 99.82
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 99.82
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 99.8
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 99.77
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 99.77
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 99.74
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 99.73
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 99.72
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 99.72
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 99.69
PLN02948 577 phosphoribosylaminoimidazole carboxylase 99.64
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 99.64
PRK07206416 hypothetical protein; Provisional 99.63
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.63
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 99.63
PRK06849389 hypothetical protein; Provisional 99.61
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.61
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 99.6
PRK08462 445 biotin carboxylase; Validated 99.58
PRK12833 467 acetyl-CoA carboxylase biotin carboxylase subunit; 99.56
PRK05586 447 biotin carboxylase; Validated 99.55
TIGR00514 449 accC acetyl-CoA carboxylase, biotin carboxylase su 99.54
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 99.54
PLN02735 1102 carbamoyl-phosphate synthase 99.54
PLN02735 1102 carbamoyl-phosphate synthase 99.53
PRK02186 887 argininosuccinate lyase; Provisional 99.52
PRK08463 478 acetyl-CoA carboxylase subunit A; Validated 99.52
PRK08654 499 pyruvate carboxylase subunit A; Validated 99.52
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.52
PRK07178 472 pyruvate carboxylase subunit A; Validated 99.51
PRK08591 451 acetyl-CoA carboxylase biotin carboxylase subunit; 99.5
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 99.46
PRK06524 493 biotin carboxylase-like protein; Validated 99.46
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 99.46
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.46
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.45
PRK06111 450 acetyl-CoA carboxylase biotin carboxylase subunit; 99.44
PLN02257 434 phosphoribosylamine--glycine ligase 99.42
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.4
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 99.37
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 99.36
PRK12999 1146 pyruvate carboxylase; Reviewed 99.35
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 99.32
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 99.31
PRK06395 435 phosphoribosylamine--glycine ligase; Provisional 99.27
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 99.21
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 99.19
COG0439 449 AccC Biotin carboxylase [Lipid metabolism] 99.17
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 99.1
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 99.06
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 99.03
PRK05784 486 phosphoribosylamine--glycine ligase; Provisional 99.0
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 98.96
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 98.85
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 98.85
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 98.83
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 98.75
COG2232389 Predicted ATP-dependent carboligase related to bio 98.74
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 98.74
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 98.7
KOG0238 670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 98.67
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 98.66
KOG3895488 consensus Synaptic vesicle protein Synapsin [Signa 98.59
COG3919415 Predicted ATP-grasp enzyme [General function predi 98.55
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 98.51
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 98.43
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 98.42
COG0151 428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 98.33
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 98.23
KOG0369 1176 consensus Pyruvate carboxylase [Energy production 98.15
PF14305239 ATPgrasp_TupA: TupA-like ATPgrasp 97.46
KOG0370 1435 consensus Multifunctional pyrimidine synthesis pro 97.38
TIGR01016 386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 97.05
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 97.02
PRK00696 388 sucC succinyl-CoA synthetase subunit beta; Provisi 96.85
KOG2156 662 consensus Tubulin-tyrosine ligase-related protein 96.8
PF14243130 DUF4343: Domain of unknown function (DUF4343) 95.89
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 94.86
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 94.42
PF07065299 D123: D123; InterPro: IPR009772 This family contai 92.28
KOG2157497 consensus Predicted tubulin-tyrosine ligase [Postt 92.05
KOG0237 788 consensus Glycinamide ribonucleotide synthetase (G 91.92
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 89.63
PRK14046 392 malate--CoA ligase subunit beta; Provisional 88.83
PF02951119 GSH-S_N: Prokaryotic glutathione synthetase, N-ter 85.56
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 81.1
COG0045 387 SucC Succinyl-CoA synthetase, beta subunit [Energy 80.89
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information 
Probab=100.00  E-value=9.2e-88  Score=640.09  Aligned_cols=303  Identities=52%  Similarity=0.884  Sum_probs=250.7

Q ss_pred             cCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCchhHHHHHHHHHHhCCCceee
Q 019319           25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL  104 (343)
Q Consensus        25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~~~~~~~l~~~~~~~p~v~Vi  104 (343)
                      ..+++++|||||++||+++|+|++|+.+|+++||+|++||+++||++|||||+||||+|++.|++.+++|.++||+++||
T Consensus         3 ~~~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~vi   82 (307)
T PF05770_consen    3 TQRKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVI   82 (307)
T ss_dssp             GGGTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEE
T ss_pred             ccccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEEeC
Q 019319          105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD  184 (343)
Q Consensus       105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv~~  184 (343)
                      ||+++|++++||.+|+++|.++......+.|++|+++++.++.+++.+.+.+++|+||+||||++||||+.||.|+||++
T Consensus        83 Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~  162 (307)
T PF05770_consen   83 DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFN  162 (307)
T ss_dssp             T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-S
T ss_pred             cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEEC
Confidence            99999999999999999999887666677999999999976667788888899999999999999999999999999999


Q ss_pred             hhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCCCCC--cccc
Q 019319          185 QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD--PCVA  262 (343)
Q Consensus       185 ~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~--~~~~  262 (343)
                      +++|+++++|||+||||||+|++|||||||++++++.|+|+||+..++.....+.|+|+++|+.++.+....++  +...
T Consensus       163 ~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~  242 (307)
T PF05770_consen  163 EEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQV  242 (307)
T ss_dssp             GGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTT
T ss_pred             HHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccc
Confidence            99999999999999999999999999999999999999999999987766667889999999988776665555  4456


Q ss_pred             CCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchHHHHHhHHhh
Q 019319          263 ELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPIK  328 (343)
Q Consensus       263 ~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~~~l~~~l~~  328 (343)
                      ++|+.+.++++|..+|++|||+|||||+|++++|+++||||||||||||+ |||||+.+|+++|++
T Consensus       243 ~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~-~vp~f~~~l~~~~~~  307 (307)
T PF05770_consen  243 EMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYK-KVPDFESVLTDFILD  307 (307)
T ss_dssp             TS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TT-TSCTHHHHHHHHHH-
T ss_pred             cCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCcc-CCCChHHHHHHHhhC
Confidence            78888999999999999999999999999999995589999999999999 999999999999975

Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton] Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14243 DUF4343: Domain of unknown function (DUF4343) Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long Back     alignment and domain information
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
2qb5_A347 Crystal Structure Of Human Inositol 1,3,4-Trisphosp 6e-29
2q7d_A346 Crystal Structure Of Human Inositol 1,3,4-Trisphosp 7e-29
2odt_X328 Structure Of Human Inositol 1,3,4-Trisphosphate 56- 3e-28
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase Complexed M 1e-08
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Adp And Mn2+ Length = 347 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 134/294 (45%), Gaps = 17/294 (5%)
Query: 32  VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
           VGY L+ KK K         L R +G+  V ++ +RP+ +QGP D+++HKLT        
Sbjct: 22  VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 81
Query: 84  ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
                 E     +EY   HPE  VLDP  AI+ L +R    + +  +       ++  P 
Sbjct: 82  NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 141
Query: 140 QL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
            + +          ++ K GLT P + K  VA G+  SHE+++ ++Q  L  ++PP V+Q
Sbjct: 142 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 200
Query: 199 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXX 256
            F+NH  VL+KV++VGE+  VV+R SL + +       +  F    VS            
Sbjct: 201 NFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELD 260
Query: 257 XXPCVAXXXXXXXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPG 310
               V                    G+ LF +DII  + T  Q  VIDIN FPG
Sbjct: 261 KIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPG 313
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Amppnp And Mn2+ Length = 346 Back     alignment and structure
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase Length = 328 Back     alignment and structure
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp Length = 324 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 1e-101
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 9e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 6e-05
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 6e-04
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Length = 346 Back     alignment and structure
 Score =  302 bits (773), Expect = e-101
 Identities = 100/302 (33%), Positives = 153/302 (50%), Gaps = 17/302 (5%)

Query: 24  QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT 83
           Q   K   VGY L+ KK K         L R +G+  V ++ +RP+ +QGP D+++HKLT
Sbjct: 13  QTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLT 72

Query: 84  ------------GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
                         E     +EY   HPE  VLDP  AI+ L +R    + +  +     
Sbjct: 73  DVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYME 132

Query: 132 YGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK 190
             ++  P  + +          ++ K GLT P + K  VA G+  SHE+++ ++Q  L  
Sbjct: 133 DDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNA 191

Query: 191 LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 250
           ++PP V+Q F+NH  VL+KV++VGE+  VV+R SL + +       +  F    VS   +
Sbjct: 192 IQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPES 251

Query: 251 SADDADLDPC--VAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYF 308
           S+   +LD    V E P   ++  L++ LR+ LG+ LF +DII  + T  Q  VIDIN F
Sbjct: 252 SSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAF 310

Query: 309 PG 310
           PG
Sbjct: 311 PG 312
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Length = 324 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280 Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 100.0
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 100.0
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 100.0
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 99.97
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 99.97
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 99.96
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 99.92
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.92
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 99.91
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.91
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 99.9
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.88
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 99.88
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 99.88
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 99.88
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 99.87
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 99.87
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.87
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.87
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 99.86
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 99.86
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 99.85
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 99.85
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 99.83
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 99.79
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.75
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.74
3vot_A 425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 99.74
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 99.72
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 99.71
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 99.71
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.71
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 99.71
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 99.69
2dwc_A 433 PH0318, 433AA long hypothetical phosphoribosylglyc 99.68
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 99.68
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 99.68
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 99.67
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 99.65
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 99.64
3ouz_A 446 Biotin carboxylase; structural genomics, center fo 99.6
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 99.59
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.58
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 99.58
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.57
2ip4_A 417 PURD, phosphoribosylamine--glycine ligase; GAR syn 99.57
3mjf_A 431 Phosphoribosylamine--glycine ligase; structural ge 99.56
2vpq_A 451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 99.56
2yrx_A 451 Phosphoribosylglycinamide synthetase; glycinamide 99.56
2dzd_A 461 Pyruvate carboxylase; biotin carboxylase, ligase; 99.56
3vmm_A 474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 99.54
2yw2_A 424 Phosphoribosylamine--glycine ligase; glycinamide r 99.54
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 99.53
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 99.52
1ulz_A 451 Pyruvate carboxylase N-terminal domain; biotin car 99.5
3glk_A 540 Acetyl-COA carboxylase 2; ATP binding, alternative 99.49
2w70_A 449 Biotin carboxylase; ligase, ATP-binding, fatty aci 99.49
2qk4_A 452 Trifunctional purine biosynthetic protein adenosi; 99.48
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 99.45
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 99.44
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 99.42
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 99.41
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 99.4
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 99.37
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 99.33
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 99.02
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 98.93
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 98.85
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 98.31
1wr2_A238 Hypothetical protein PH1789; structural genomics, 98.27
3ufx_B 397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 97.49
2nu8_B 388 SCS-beta, succinyl-COA synthetase beta chain; citr 97.42
2fp4_B 395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 97.2
2io8_A619 Bifunctional glutathionylspermidine synthetase/ami 97.1
2vob_A652 Trypanothione synthetase; ligase; 2.3A {Leishmania 92.02
3n6x_A474 Putative glutathionylspermidine synthase; domain o 91.66
3mwd_A 425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 87.01
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
Probab=100.00  E-value=1.2e-61  Score=471.17  Aligned_cols=306  Identities=32%  Similarity=0.501  Sum_probs=258.8

Q ss_pred             cCCceEEEEEEecccccccccchHHHhhhhhcceEEEEeeCCCCCCcCCCccEEEEccCc------------hhHHHHHH
Q 019319           25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------------KEWRQILE   92 (343)
Q Consensus        25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~ID~~~~l~~q~~fDvilhK~t~------------~~~~~~l~   92 (343)
                      ..+++++|||||++||.++|++++|+++++++|++++.||++.++..|++||+||||+++            ..+.+.++
T Consensus        14 ~~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~   93 (346)
T 2q7d_A           14 TFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQ   93 (346)
T ss_dssp             GGGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999987            25788899


Q ss_pred             HHHHhCCCceeeChhhHHHHhcCHHHHHHHHHhccccCCCCCccCCcEEEEecC-CCCchHHHHhcCCCCcEEEecCCCC
Q 019319           93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVAD  171 (343)
Q Consensus        93 ~~~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~-~~~~~~~l~~~~l~fP~VvKp~~a~  171 (343)
                      +|..+|||++||||+++|++|.||+.|+++|++..+....++|++|+|+++.+. .+++.+.+...+++||+|+||+.|+
T Consensus        94 ~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~  173 (346)
T 2q7d_A           94 EYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAH  173 (346)
T ss_dssp             HHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCS
T ss_pred             HHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence            999889999999999999999999999999998644444569999999999643 3455555556789999999999999


Q ss_pred             CCCCceeeEEEeChhhHhccCCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecc--ccccc
Q 019319          172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPR--VSCAA  249 (343)
Q Consensus       172 GS~~sh~m~iv~~~~~L~~l~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~--~s~~~  249 (343)
                      ||+ +|+|+++++.++|..++.|+|+||||+|+|++|||||||+++++++|+++|+|..+.  +..|+|+|..  +++++
T Consensus       174 Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g  250 (346)
T 2q7d_A          174 GTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPE  250 (346)
T ss_dssp             STT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTT
T ss_pred             cce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCC
Confidence            996 999999999999999999999999999999999999999999999999999887653  2356777764  66665


Q ss_pred             ccCCCCCCCc--cccCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchHHHHHhHHh
Q 019319          250 ASADDADLDP--CVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVRAHIYRLPI  327 (343)
Q Consensus       250 ~~~~~~~~~~--~~~~~p~~~~~~~lA~~l~~~lGl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~~~l~~~l~  327 (343)
                      ..+.....++  ...++++.++++++|.+++++||++++|||+|++.++| +|||+|||+||||+ |+++|...+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~~-g~~~~~~~i~~~l~  328 (346)
T 2q7d_A          251 SSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGYE-GVSEFFTDLLNHIA  328 (346)
T ss_dssp             CCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCCT-TCTTHHHHHHHHHH
T ss_pred             ccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCcccc-ccchHHHHHHHHHH
Confidence            4432221111  12345667889999999999999999999999986455 69999999999999 99999999999999


Q ss_pred             hhcccchh
Q 019319          328 KPDTEPVQ  335 (343)
Q Consensus       328 ~~i~~~~~  335 (343)
                      +++++++.
T Consensus       329 ~~~~~~~~  336 (346)
T 2q7d_A          329 TVLQGQST  336 (346)
T ss_dssp             HHHHHHHT
T ss_pred             HHhhccCC
Confidence            99876543
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* Back     alignment and structure
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 99.83
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 99.8
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 99.78
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 99.75
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.72
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 99.64
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 99.37
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 99.35
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 99.33
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.31
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 99.3
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 99.28
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 99.22
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 99.2
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 99.14
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 99.14
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.04
d1uc8a188 Lysine biosynthesis enzyme LysX, N-terminal domain 98.12
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 93.64
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 93.27
d1gsaa1122 Prokaryotic glutathione synthetase, N-terminal dom 90.55
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.9e-20  Score=164.04  Aligned_cols=190  Identities=14%  Similarity=0.124  Sum_probs=119.9

Q ss_pred             ChhhHHHHhcCHHHHH-HHHHh-ccccCCCCCccCCcEEEEecCCCCchHHHHhcCCCCcEEEecCCCCCCCCceeeEEE
Q 019319          105 DPPYAIQHLHNRQSML-QCVAD-MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA  182 (343)
Q Consensus       105 Dp~~ai~~~~dR~~~~-~~L~~-~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~GS~~sh~m~iv  182 (343)
                      |++++|++|.||..++ +++.. ..+.  ..++|++......    +..+  .....+||+|+||..+  + +|+||.++
T Consensus         1 Ns~~si~~~~dK~~v~~~l~~~~~~l~--~~~~p~~~~~~~~----~~~~--~~~~~~~PvVvKP~~g--~-~g~Gv~~v   69 (206)
T d1i7na2           1 NSLESIYNFCDKPWVFAQMVAIFKTLG--GEKFPLIEQTYYP----NHRE--MLTLPTFPVVVKIGHA--H-SGMGKVKV   69 (206)
T ss_dssp             SCHHHHHHTSSHHHHHHHHHHHHHHHC--TTTSCBCCCEEES----SGGG--GSSCCCSSEEEEESSC--S-TTTTEEEE
T ss_pred             CCHHHHHHhcCcHHHHHHHHHHhcccC--CCccceeeccccc----chhH--HhhhcCCceEEecCCC--C-CCCCeEEE
Confidence            7899999999995433 22221 1121  1245555443221    1222  2345789999999884  3 57899999


Q ss_pred             eChhhHhcc-------CCCeEEEecccCCCcEEEEEEECCEEEEEEEecCCCCccccCccCCceeeecccccccccCCCC
Q 019319          183 YDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA  255 (343)
Q Consensus       183 ~~~~~L~~l-------~~p~v~QEFI~h~g~~~Kv~VIG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~  255 (343)
                      .++++|...       +.++++||||+ ++.+++|+|+|+++..+.+++.++    +|+++.        ..      ..
T Consensus        70 ~~~~~l~~~~~~~~~~~~~~~vqe~I~-~~~dirv~vig~~~~~~~~~~~~~----~~~~n~--------~~------~~  130 (206)
T d1i7na2          70 ENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKTNT--------GS------AM  130 (206)
T ss_dssp             CSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSCT----TTSCSC--------CC------SS
T ss_pred             eecchhhhHHHHHhhccCeEEEEEeec-ccceEEEEEEecceeEEEeecccc----cccccc--------cc------Cc
Confidence            999888653       77999999996 468999999999999887776432    233221        00      00


Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEEecCCCCCccCCcchH--HHHHhHHhhhcc
Q 019319          256 DLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINYFPGEVWENAGVR--AHIYRLPIKPDT  331 (343)
Q Consensus       256 ~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl~l~GvDvi~~~~~g~~~~ViDVN~fPg~~~gv~~~~--~~l~~~l~~~i~  331 (343)
                      ..    ...+. +..++++.++++.+ +++++|||++++. +| ++||+|||..|...++-...+  ..+.|++.+.+.
T Consensus       131 ~~----~~~~~-~~~~~~~~~~~~~~~~~~~~gvD~~~~~-dG-~~yvlEvN~~~~~~~~~~~~~~~~~i~d~v~~~~~  202 (206)
T d1i7na2         131 LE----QIAMS-DRYKLWVDACSEMFGGLDICAVKAVHGK-DG-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMN  202 (206)
T ss_dssp             EE----EECCC-HHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             cc----cccCC-hHHHHHHHHHhhhccccceeeEEEEEcC-CC-CEEEEEEcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence            00    01112 34566666776666 5799999999985 45 799999999886541211111  235555555443
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure