Citrus Sinensis ID: 019328

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLV
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHcccccEEEEcccccccHHHHHHcccccccEEEEEccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHccccccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEccccccHHHHHHcccccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccEccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHEEEEcccccccHHHHHccEEcccHHHHHccccEEEEcccccccccccEcHHHHccccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpgtrWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAvgynnvdvnaankygiavgntpgvlTETTAELAASLSLAAARRIVEADEFMraglydgwlpnlfvgnllkgqtvgvigagrIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLkangeqpvtwkrASSMDEVLREADvislhpvldkttYHLINKERLATMKKEAILVncsrgpviDEVALVEHlkqnpmfrvgldvfedepymkpglsemknAIVVPHIASASKWTREGMATLAALNVLV
Flexible Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFlkangeqpvtwKRASSMDEVLREAdvislhpvldkttYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLV
Low Complexity Region (SEG)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVltettaelaaslslaaaRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLV
Disordered region (IsUnstruct)
******IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALN***
Disordered Region (DISOPRED)
*****************VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLV
Disordered Region (DISEMBL)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLV
Disordered Region (DISPRO)
**KPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
P13443	382	Glycerate dehydrogenase O	N/A	no	0.997	0.892	0.923	0.0
Q9C9W5	386	Glycerate dehydrogenase H	yes	no	0.997	0.883	0.923	0.0
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.888	0.910	0.389	6e-51
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.883	0.890	0.383	7e-49
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.690	0.712	0.455	2e-48
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.786	0.800	0.389	5e-48
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.877	0.903	0.393	1e-47
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.690	0.704	0.423	7e-47
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.842	0.864	0.389	1e-46
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.888	0.910	0.386	3e-43

>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/341 (92%), Positives = 332/341 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL++MKNAI+VPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVL 341

Cucumis sativus (taxid: 3659)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana GN=HPR PE=1 SV=1

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/341 (92%), Positives = 332/341 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++Q CRVEIC  KKTILSVEDII LIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQGCRVEICHLKKTILSVEDIIDLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMR GLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAMMKKEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           +EP+MKPGL++ KNAIVVPHIASASKWTREGMATLAALNVL
Sbjct: 301 EEPFMKPGLADTKNAIVVPHIASASKWTREGMATLAALNVL 341

Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 192/331 (58%), Gaps = 27/331 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E  
Sbjct: 2   KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   K  +N AVGY+N+D+  A K G+ + NTP VLT  TA++A  L LA 
Sbjct: 58  DAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD+F+R+G +      W P +F+G  + G+T+G++G GRIG A AR   +GF M
Sbjct: 116 ARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++Y    +   +EK + A  +F+               +DE+L+E+D + L   L K T
Sbjct: 175 RILYNSRTRKPEVEKELGA--EFM--------------PLDELLKESDFVVLVVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ L++  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVL 341
            + N ++ PHI SA+   REGMA L A N++
Sbjct: 279 SLDNVVLAPHIGSATYGAREGMAELVARNLI 309

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  194 bits (494), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 187/331 (56%), Gaps = 29/331 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+  
Sbjct: 5   KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKI 59

Query: 75  -GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
             E + AA      K  S  +VG++++D+  A K GI V +TPGVLT+  AE    L LA
Sbjct: 60  DAEVMDAA---PNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILA 116

Query: 134 AARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
             RRIVEAD+ +R G +D  W P    G  LKG+T+G++G GRIG A A+ +   F + +
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKI 175

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD+ +   +E  +         N E        + +D +L ++D++S+H  L K TYH
Sbjct: 176 LYYDIERRWDVETVI--------PNME-------FTDLDTLLEKSDIVSIHVPLTKETYH 220

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LS 310
           LIN+ERL  MKK A L+N +RGPV+D  ALV+ LK+  +    LDVFE EP + P   L+
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEP-LPPNHPLT 279

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVL 341
           +  N ++ PHIASA+   R+ MA LAA N++
Sbjct: 280 KFDNVVLAPHIASATIEARQRMAELAARNLI 310

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/259 (45%), Positives = 161/259 (62%), Gaps = 23/259 (8%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K  +  AVGY+N+D+  A K GI V NTPGVLT+ TA+LA +L LA ARRIVEAD F+R+
Sbjct: 69  KIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRS 128

Query: 148 GLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G +     GW P +F+G  LKG+T+G++G GRIG A A+   +GF M +IYY   +    
Sbjct: 129 GEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKR-AKGFGMKIIYYSRTRKPEA 187

Query: 204 EKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262
           E+ + A Y  F                 + +L+E+D ISLH  L K TYH+I ++ L  M
Sbjct: 188 EEEIGAEYVDF-----------------ETLLKESDFISLHVPLTKETYHMIGEKELKLM 230

Query: 263 KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
           K  AIL+N SRG V+D  AL++ LK+  +   GLDVFE+EPY    L ++KN ++ PHI 
Sbjct: 231 KPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIG 290

Query: 323 SASKWTREGMATLAALNVL 341
           SA+   REGMA L A N++
Sbjct: 291 SATHEAREGMAELVAKNLI 309

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/293 (38%), Positives = 168/293 (57%), Gaps = 24/293 (8%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E ++  + D  D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V
Sbjct: 37  EKLLEKVKD-VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYV 93

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTV 168
            NTP VLT  TA+ A +L LA AR +V+ D+F+R+G +      W P  F+G  L G+T+
Sbjct: 94  TNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTI 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A AR   +GF M ++YY   + ++ EK + A                   
Sbjct: 154 GIVGFGRIGQAIARR-AKGFNMRILYYSRTRKSQAEKELGA----------------EYR 196

Query: 229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288
            ++EVL+E+D + L   L K T ++IN+ERL  MK  AILVN +RG V+D  AL++ LK+
Sbjct: 197 PLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKE 256

Query: 289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
             +   GLDVFE+EPY    L  + N ++ PHI SA+   RE MA L A N++
Sbjct: 257 GWIAGAGLDVFEEEPYYNEELFSLDNVVLTPHIGSATFEAREAMAELVARNLI 309

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 192/333 (57%), Gaps = 33/333 (9%)

Query: 15  KYRVVSTKPMP--GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE 72
           K RV  T+ +P  G   I    E D   +     K +     II  + D CD ++  LT+
Sbjct: 2   KPRVFVTREIPERGLSKIEEHFELDLWKDEAPPSKKV-----IIERVKD-CDALVSLLTD 55

Query: 73  DWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSL 132
                +F A  +   +  +  AVGY+N+DV  A K GI V NTPGVLTETTA+ A +L +
Sbjct: 56  PIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLM 113

Query: 133 AAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
           AAARR+VEAD ++R G +   W P + +G  + G+T+G++G GRIG+A AR   +GF M 
Sbjct: 114 AAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARR-AKGFGMR 172

Query: 192 LIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           ++YYD   + R E F    G +++               ++++L E+D +SLH  L + T
Sbjct: 173 ILYYD---SIRREDFEKELGVEYV--------------PLEKLLEESDFVSLHVPLTEET 215

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-- 308
           YH+I +E+L  MK+ AILVN SRG V+D+ AL + LK+  +   GLDVFE EP + P   
Sbjct: 216 YHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAGLDVFEQEP-IPPDDP 274

Query: 309 LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           L +++N ++ PH ASAS  TR  MA + A N++
Sbjct: 275 LLKLENVVLAPHAASASHETRSRMAEMVAENLI 307

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 158/260 (60%), Gaps = 24/260 (9%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           +  + MAVG++N+DV  A + GI V NTPGVLTE TAE   +L LAAARR+VEAD F+R 
Sbjct: 70  RIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRW 129

Query: 148 G----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G    L  GW P + +G  L+G+T+G++G GRIGS  A +  + F M +IY+   +   +
Sbjct: 130 GEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIG-KAFGMRIIYHSRSRKREI 188

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK + A                   S++++LRE+D++S+H  L   T HLI +  L  MK
Sbjct: 189 EKELGA----------------EYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMK 232

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHI 321
           K AILVN  RG ++D  ALV+ L++  +    LDVFE+EP + P   L+  KN ++ PH 
Sbjct: 233 KTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEP-LNPNHPLTAFKNVVLAPHA 291

Query: 322 ASASKWTREGMATLAALNVL 341
           ASA++ TR  MA +AA N++
Sbjct: 292 ASATRETRLRMAMMAAENLV 311

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/313 (38%), Positives = 183/313 (58%), Gaps = 25/313 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N
Sbjct: 18  MLKEHFEVEVWPEEREI-PREVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVAN 73

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD- 151
            AVGY+N+DV  A + GI V NTP VLT+ TA+ A +L LA ARR++EAD F R+G +  
Sbjct: 74  YAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKR 133

Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY   +    EK + 
Sbjct: 134 RGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARR-ARGFGMRILYYSRSRKPEAEKELG 192

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F               S++++LRE+D + L   L K T ++IN+ERL  MKK AIL
Sbjct: 193 A--EF--------------RSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAIL 236

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328
           VN +RG V+D  AL++ LK+  +   GLDV+E+EPY    L  +KN ++ PHI SA+   
Sbjct: 237 VNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGA 296

Query: 329 REGMATLAALNVL 341
           REGMA L A N++
Sbjct: 297 REGMAELVARNLI 309

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/331 (38%), Positives = 188/331 (56%), Gaps = 27/331 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I++L E    VE+  +++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITRAIP-ENGIDMLREH-FEVEVWPEEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F    R   +  +N AVGY+NVDV  A + GI V NTP VLT  TA+ A +L LA 
Sbjct: 58  DGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD F R+G +      W P +F+G+ + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    E+ + A  +F                ++E+L+E+D + L   L K T
Sbjct: 175 RILYYSRTRKPEAEEELKA--EF--------------KPLEELLKESDFVVLAVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+I +  L  MK  AILVN +RG V+D  AL++ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVL 341
            +KN I+ PHI SA+   REGMA L A N++
Sbjct: 279 SLKNVILAPHIGSATFGAREGMAELVARNLI 309

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
255581842	386	hydroxypyruvate reductase, putative [Ric	0.997	0.883	0.970	0.0
118489484	386	unknown [Populus trichocarpa x Populus d	0.997	0.883	0.953	0.0
147805559	386	hypothetical protein VITISV_020147 [Viti	0.997	0.883	0.941	0.0
225428049	386	PREDICTED: glycerate dehydrogenase [Viti	0.997	0.883	0.941	0.0
224078341	386	predicted protein [Populus trichocarpa]	0.997	0.883	0.950	0.0
13873334	386	hydroxypyruvate reductase [Bruguiera gym	0.997	0.883	0.947	0.0
388493492	388	unknown [Lotus japonicus]	0.997	0.878	0.929	0.0
449454213	382	PREDICTED: glycerate dehydrogenase-like	0.997	0.892	0.923	0.0
118723307	386	hydroxypyruvate reductase [Solenostemon	0.997	0.883	0.926	0.0
388506608	386	unknown [Medicago truncatula]	0.997	0.883	0.917	0.0

>gi|255581842|ref|XP_002531721.1| hydroxypyruvate reductase, putative [Ricinus communis] gi|223528624|gb|EEF30641.1| hydroxypyruvate reductase, putative [Ricinus communis]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/341 (97%), Positives = 336/341 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQATRLEKFVTAYG FL+ANGEQPVTWKRASSMDEVLR ADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQATRLEKFVTAYGAFLQANGEQPVTWKRASSMDEVLRVADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVL 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489484|gb|ABK96544.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/341 (95%), Positives = 339/341 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVL 341

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805559|emb|CAN65023.1| hypothetical protein VITISV_020147 [Vitis vinifera]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/341 (94%), Positives = 338/341 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVL 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428049|ref|XP_002279281.1| PREDICTED: glycerate dehydrogenase [Vitis vinifera] gi|297744600|emb|CBI37862.3| unnamed protein product [Vitis vinifera]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/341 (94%), Positives = 338/341 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVL 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078341|ref|XP_002305524.1| predicted protein [Populus trichocarpa] gi|222848488|gb|EEE86035.1| predicted protein [Populus trichocarpa]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/341 (95%), Positives = 339/341 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQ+KTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQQKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVL 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13873334|dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorhiza]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/341 (94%), Positives = 339/341 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP G+YRVVSTKPMPGTRWINLL++QDCR+EICT+KKTILSVEDIIAL+G
Sbjct: 1   MAKPVSIEVWNPRGRYRVVSTKPMPGTRWINLLVQQDCRLEICTEKKTILSVEDIIALMG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALS+AGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA++MDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAATMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LA+MKKEA+LVNCSRGPVIDEVALVEHL++NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLASMKKEAVLVNCSRGPVIDEVALVEHLRRNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL++MKNAIVVPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLADMKNAIVVPHIASASKWTREGMATLAALNVL 341

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493492|gb|AFK34812.1| unknown [Lotus japonicus]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/341 (92%), Positives = 335/341 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  EKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAY  FLKANGE PVTWKRASSMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRASSMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHL+QNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEAALVEHLRQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           +EPYMKPGL+E+KNAIVVPHIASASKWTREGMATLAALNVL
Sbjct: 301 EEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVL 341

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454213|ref|XP_004144850.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|449508825|ref|XP_004163421.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|118564|sp|P13443.1|DHGY_CUCSA RecName: Full=Glycerate dehydrogenase; Short=GDH; AltName: Full=NADH-dependent hydroxypyruvate reductase; Short=HPR gi|18264|emb|CAA41434.1| NADH-dependent hydroxypyruvate reductase [Cucumis sativus] gi|18275|emb|CAA32764.1| unnamed protein product [Cucumis sativus]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/341 (92%), Positives = 332/341 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL++MKNAI+VPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVL 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723307|gb|ABL10359.1| hydroxypyruvate reductase [Solenostemon scutellarioides]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/341 (92%), Positives = 335/341 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+ +EV+NPNGKYRVVSTK MPGTRWINLL++QDCR+EICT+KKTILSVEDII+LIG
Sbjct: 1   MAKPLQVEVYNPNGKYRVVSTKSMPGTRWINLLVDQDCRLEICTEKKTILSVEDIISLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGG AFSNMAVGYNNVDV+AANK+G+AVGNTPGVLT
Sbjct: 61  NKCDGVIGQLTEDWGEKLFSALSRAGGTAFSNMAVGYNNVDVDAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFL+ANGEQPVTWKRASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLQANGEQPVTWKRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL +MKNAI+VPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLEKMKNAIIVPHIASASKWTREGMATLAALNVL 341

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506608|gb|AFK41370.1| unknown [Medicago truncatula]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/341 (91%), Positives = 335/341 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSI+VWNPNGKYRVVSTK MPGTRWINLLI+QDCR+EICT+KKTILSVED IALIG
Sbjct: 1   MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDTIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALS+AGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG FLKANGE PVTWKRA+SMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAIL+NCSRGPVIDEVALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL+E+KNA+VVPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVL 341

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.330	0.349	0.389	4e-38
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.684	0.722	0.36	2.2e-34
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.710	0.740	0.339	4.6e-34
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.684	0.722	0.364	5.8e-34
TIGR_CMR|BA_5135	330	BA_5135 "D-isomer specific 2-h	0.883	0.915	0.296	2.9e-32
TIGR_CMR|SPO_1570	330	SPO_1570 "D-isomer specific 2-	0.766	0.793	0.314	2.9e-32
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.368	0.24	0.384	3.3e-32
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.508	0.548	0.297	9.6e-31
UNIPROTKB|P37666	324	ghrB "GhrB" [Escherichia coli	0.692	0.731	0.363	2.3e-30
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.713	0.743	0.329	4.9e-30

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 225 (84.3 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
 Identities = 44/113 (38%), Positives = 72/113 (63%)

Query:   229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288
             +++E+L+ AD I+++   +   +H+I++E+   MKK A +VN SRGP++ E AL   LK 
Sbjct:   191 TLEELLQTADFITINCAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKT 250

Query:   289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
             N +    LDVFE EP +   L  +KN ++ PH+ +A+  TR+ MA +A  N+L
Sbjct:   251 NEIEGAALDVFEFEPKITEELKGLKNVVLAPHVGNATFETRDAMAEMAVRNIL 303

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 90/250 (36%), Positives = 137/250 (54%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N DV+  ++ GI + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    + T LE+ + A 
Sbjct:   131 TRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S+D++L EAD + L   L + T HLI +  L+ MK  AIL+N
Sbjct:   190 -QF--------------RSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILIN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
              +RGP++DE AL+E L+   +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+
Sbjct:   235 IARGPIVDEPALIEALQNGTIRGAGLDVYEKEPLKESPLFQLKNAVTLPHIGSATTETRQ 294

Query:   331 GMATLAALNV 340
              MA  A  N+
Sbjct:   295 AMADRAYHNL 304

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/262 (33%), Positives = 135/262 (51%)

Query:    82 LSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             ++RAG   +  +    G +N+DV +A + GI V NTPGV                 RR+ 
Sbjct:    65 MARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMH 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E  + M AG +DGW P   +G  L G+ +G+IG GRIG A AR     F M + Y++   
Sbjct:   125 EGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARR-ARAFGMQIHYHNRKP 183

Query:   200 -ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
              ++R+E+ + A              W    S+D++L   D++S++      T+HLIN  R
Sbjct:   184 VSSRIEESLEA------------TYW---DSLDQMLARMDIVSINCPHTPATFHLINARR 228

Query:   259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVV 318
             L  MK EA ++N +RG VIDE AL   ++   +   GLDVFE EP + P L  + N +++
Sbjct:   229 LGLMKPEAYIINTARGEVIDEAALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLL 288

Query:   319 PHIASASKWTREGMATLAALNV 340
             PH+ SA+   R  M     +N+
Sbjct:   289 PHMGSATIEGRTEMGEKVIINI 310

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 91/250 (36%), Positives = 136/250 (54%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N D+   N+ G+ + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAELDAWTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    +   LE+ + A 
Sbjct:   131 QASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRKAALEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S++++L EAD + L   L + T HLI+   LA MK  AILVN
Sbjct:   190 -QF--------------RSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
              SRGPV+DE AL+E L++  +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+
Sbjct:   235 ISRGPVVDEPALIEALQKGQIRGAGLDVYEKEPLAESPLFQLKNAVTLPHIGSATHETRD 294

Query:   331 GMATLAALNV 340
              MA  A  N+
Sbjct:   295 AMAARAMSNL 304

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

TIGR_CMR|BA_5135 BA_5135 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 98/330 (29%), Positives = 162/330 (49%)

Query:    15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             K +V   +P+P   ++   + + C  E   Q + +   + ++  I DK DG++       
Sbjct:    12 KPKVYIAEPVP--TFVENYLSEHCDYEKWEQNEKVPR-DVLLEKIQDK-DGLLN-FGSAI 66

Query:    75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXX 134
              E L  A      K  SN++VGY+N D+ A  K+ +   NTP V                
Sbjct:    67 NEELLEAAPNL--KVVSNISVGYDNFDLQAMAKHNVIGTNTPYVLDDTVADLVFALMLSA 124

Query:   135 XRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              RR+ E D +++ G ++  +     G  +   T+G+IG GRIG A A+    GF M+++Y
Sbjct:   125 GRRVCELDSYVKNGEWNAEIGKEHFGLDVHHSTIGIIGMGRIGEAVAKRAKFGFDMDVLY 184

Query:   195 YDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYH 252
             Y+  +    E KF   Y                   +  +L+++D ++ L P+ D+T YH
Sbjct:   185 YNRRRKEEAEQKFDATY-----------------CDLQTLLKQSDFIVLLTPLTDET-YH 226

Query:   253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSE 311
             LI ++  + MK+ AI +N SRG  +DE AL++ L +  +F  G+D F  EP  K   L  
Sbjct:   227 LIGEKEFSFMKETAIFINASRGKTVDEEALIDALTEKKIFAAGIDTFTQEPIQKDNPLLS 286

Query:   312 MKNAIVVPHIASASKWTREGMATLAALNVL 341
             ++N + +PHI SA+  TR+ MA  AA N++
Sbjct:   287 LQNVVTLPHIGSATLKTRQQMAMTAAENLV 316

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_1570 SPO_1570 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 88/280 (31%), Positives = 141/280 (50%)

Query:    64 DGVIGQLTEDWG-ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
             D ++  +T+  G E L     +   +  +N  VGY+++D +A   +GI V NTP V    
Sbjct:    55 DAILPTVTDKLGAEALDVTAPQT--RLLANYGVGYSHIDSDAVRAHGITVSNTPDVLSEC 112

Query:   123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                          RR  E +  +RAG + GW P   VG+ + G+ +G++G GRIG A A+
Sbjct:   113 TADIAMTLMLMVARRAGEGERELRAGQWTGWRPTHLVGSKVSGKVLGIVGFGRIGQAMAQ 172

Query:   183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
                 GF M ++  +  ++   +  +  YG              +  ++D +L + D +SL
Sbjct:   173 RAHHGFGMKILVQN--RSAVPQDVLDRYGA------------TQVETLDAMLPQCDFVSL 218

Query:   243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
             H        HLIN  RL  MK +A L+N +RG V+DE AL + L  + +    LDVF+ E
Sbjct:   219 HCPGGAANRHLINSRRLDLMKPDAFLINTARGEVVDEHALAQALMFDCIGGAALDVFDGE 278

Query:   303 PYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLV 342
             P + P L +  N +++PH+ SA++ TRE M  +  L+ LV
Sbjct:   279 PRIAPVLLDCDNLVMLPHLGSATRETREAMG-MRVLDNLV 317

GO:0008152 "metabolic process" evidence=ISS

GO:0050578 "(R)-2-hydroxyacid dehydrogenase activity" evidence=ISS

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 229 (85.7 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
 Identities = 50/130 (38%), Positives = 77/130 (59%)

Query:   200 ATRLEKFVT---AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             A R++ F T    Y  F+     Q +      S++E+L+ +D++++H  L+  T +LIN+
Sbjct:   155 AKRVKAFETRVIGYDPFISEERAQ-MLGITLMSLEELLQNSDIVTMHLPLNNETRNLINR 213

Query:   257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 316
             ERL  MKK A ++NC+RG +IDE AL E LK   +    LDVF  EP  +  L E+ N I
Sbjct:   214 ERLKLMKKSAFIINCARGGIIDEEALYEALKAGEIAGAALDVFSKEPLTESPLFELPNVI 273

Query:   317 VVPHIASASK 326
             V PH+ +++K
Sbjct:   274 VTPHLGASTK 283

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 210 (79.0 bits), Expect = 9.6e-31, Sum P(2) = 9.6e-31
 Identities = 53/178 (29%), Positives = 84/178 (47%)

Query:    17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
             +++  +PM  T  +      +   EI T    +   E + AL   + D V+  L + +  
Sbjct:     2 KLLIARPM--TAAVEARARAEFETEIRTSTTPLSEAEMLRAL--REFDIVMPTLGDMFSA 57

Query:    77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
              +FA +     +  +N  VGYN++ V AA   G+AV NTPG                  R
Sbjct:    58 DVFAQVPEPRCRLLANFGVGYNHIAVAAARAAGVAVTNTPGAVTDATADIAMTLLLMTAR 117

Query:   137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
             R  E +  +R+G ++GW P   +G+ + G+ VG++G GRIG A AR    GF M + Y
Sbjct:   118 RAGEGERLVRSGAWEGWHPTQMLGHHVTGKHVGIVGLGRIGQAIARRCHFGFGMQVSY 175

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|P37666 ghrB "GhrB" [Escherichia coli K-12 (taxid:83333)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 93/256 (36%), Positives = 131/256 (51%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A S ++VGY+N DV+A     I + +TP V                 RR+VE  E ++A
Sbjct:    68 RATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +   + G  +  +T+G++G GRIG A A+    GF M +    LY A R  K  
Sbjct:   128 GEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPI----LYNARRHHK-- 181

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  +F   N        R   +D +L+E+D + L   L   T+HL   E+ A MK  AI
Sbjct:   182 EAEERF---NA-------RYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASAS 325
              +N  RGPV+DE AL+  L++  +   GLDVFE EP     P LS M N + VPHI SA+
Sbjct:   232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS-MANVVAVPHIGSAT 290

Query:   326 KWTREGMATLAALNVL 341
               TR GMA  A  N++
Sbjct:   291 HETRYGMAACAVDNLI 306

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046181 "ketogluconate catabolic process" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019521 "D-gluconate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=IEA;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 86/261 (32%), Positives = 130/261 (49%)

Query:    82 LSRAGGKA--FSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             L++AG +    +N   G +++DV  A + GI V NTPGV                 RRI 
Sbjct:    65 LAQAGERMRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIP 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E    M+   + GW P   +G  + G+ +G++G GRIG A AR     F M + Y++   
Sbjct:   125 EGLAVMQKNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARR-ASAFGMQIHYHN--- 180

Query:   200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
               RL   V      L+A      TW    S+D+++   DVIS++     +T+HL+N  RL
Sbjct:   181 RRRLRPEVE---DALEA------TWW--DSLDQMIARMDVISVNCPSTPSTFHLMNARRL 229

Query:   260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319
               MK   ++VN SRG VIDE AL   ++   +   GLDV+E    + P L E+ N +++P
Sbjct:   230 KLMKPTGVIVNTSRGEVIDENALTRMIRTGEIAGAGLDVYEHGTQVNPRLRELPNVVLLP 289

Query:   320 HIASASKWTREGMATLAALNV 340
             H+ SA+   R  M     +N+
Sbjct:   290 HMGSATLEGRIEMGEKVIINI 310

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JEZ2	GYAR_PYRKO	1, ., 1, ., 1, ., 2, 6	0.3897	0.8421	0.8648	yes	no
Q9UYR1	GYAR_PYRAB	1, ., 1, ., 1, ., 2, 6	0.3945	0.8918	0.9104	yes	no
A1RYE4	GYAR_THEPD	1, ., 1, ., 1, ., 2, 6	0.3836	0.8830	0.8908	yes	no
C5A1V0	GYAR_THEGJ	1, ., 1, ., 1, ., 2, 6	0.3867	0.8888	0.9101	yes	no
Q9C9W5	HPR1_ARATH	1, ., 1, ., 1, ., 2, 9	0.9237	0.9970	0.8834	yes	no
B1L765	GYAR_KORCO	1, ., 1, ., 1, ., 2, 6	0.3933	0.8771	0.9036	yes	no
O32264	TKRA_BACSU	1, ., 1, ., 1, ., 2, 1, 5	0.3302	0.8801	0.9261	yes	no
O58320	GYAR_PYRHO	1, ., 1, ., 1, ., 2, 6	0.3865	0.8421	0.8622	yes	no
P13443	DHGY_CUCSA	1, ., 1, ., 1, ., 2, 9	0.9237	0.9970	0.8926	N/A	no
B6YWH0	GYAR_THEON	1, ., 1, ., 1, ., 2, 6	0.3897	0.8888	0.9101	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
4th Layer	1.1.1.29	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IV1470 hydroxypyruvate reductase (386 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	0.0
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-132
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	2e-83
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-83
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	9e-80
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	3e-78
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	8e-78
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	7e-76
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	4e-69
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	4e-64
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	4e-64
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-61
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	5e-61
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	5e-60
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	2e-58
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	7e-58
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-57
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-56
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	3e-56
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	5e-56
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	1e-54
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	9e-54
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	2e-53
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	1e-52
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	1e-52
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-50
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	2e-49
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	1e-48
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	4e-47
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	9e-47
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-45
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	7e-44
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	1e-40
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	7e-40
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	1e-38
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	5e-37
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	4e-34
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-32
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	8e-32
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	1e-31
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-30
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	4e-30
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	4e-30
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	4e-28
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-27
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	8e-26
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	1e-25
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	7e-25
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	4e-24
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-23
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	2e-22
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	3e-18
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	7e-17
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	3e-15
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	4e-15
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	2e-14
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	8e-14
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	6e-13
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	4e-12
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	1e-06
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	2e-05

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  727 bits (1877), Expect = 0.0
 Identities = 323/341 (94%), Positives = 337/341 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++QDCRVEICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKERLA MKKEA+LVN SRGPVIDEVALVEHLK NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVL 341

Length = 386

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  378 bits (973), Expect = e-132
 Identities = 134/327 (40%), Positives = 186/327 (56%), Gaps = 24/327 (7%)

Query: 16  YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWG 75
            +V+ T+ +P    + LL  +   VE+   +   L  E+++       DG++  LT+   
Sbjct: 1   PKVLVTRRLPE-EALALL-REGFEVEVW-DEDRPLPREELLEAAKG-ADGLLCTLTDKID 56

Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAA 135
             L  A      K  +N +VGY+++DV+AA   GI V NTP VLT+ TA+LA +L LAAA
Sbjct: 57  AELLDAAPPL--KVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAA 114

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE D F+RAG + GW P L +G  L G+T+G++G GRIG A AR    GF M ++Y+
Sbjct: 115 RRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAK-GFGMKILYH 173

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           +  +    E+ + A                   S+DE+L E+D +SLH  L   T HLIN
Sbjct: 174 NRSRKPEAEEELGAR----------------YVSLDELLAESDFVSLHCPLTPETRHLIN 217

Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKN 314
            ERLA MK  AIL+N +RG V+DE ALVE LK   +   GLDVFE EP      L  + N
Sbjct: 218 AERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPN 277

Query: 315 AIVVPHIASASKWTREGMATLAALNVL 341
            +++PHI SA+  TR  MA LAA N+L
Sbjct: 278 VVLLPHIGSATVETRTAMAELAADNLL 304

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  255 bits (653), Expect = 2e-83
 Identities = 115/315 (36%), Positives = 169/315 (53%), Gaps = 34/315 (10%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE-------DWGETLFAALSRAG 86
           +E++  V        ++S E+++  I D  D +I  L+        D  + L        
Sbjct: 17  LEENFEV-TYYDGLGLISKEELLERIAD-YDALITPLSTPVDKEIIDAAKNL-------- 66

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K  +N   G++N+DV+ A + GI V NTP V TE TAEL   L LA ARRI E D  MR
Sbjct: 67  -KIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMR 125

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
            G + GW P  F+G+ L G+T+G+IG GRIG A AR   + F M ++YY+ ++ +   + 
Sbjct: 126 RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARR-AKAFGMKILYYNRHRLSEETE- 183

Query: 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266
               G           T+     +DE+L+E+D +SLH      T+HLI+      MK  A
Sbjct: 184 -KELG----------ATYV---DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTA 229

Query: 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
            L+N +RGP++DE ALV+ LK   +    LDVFE EP + P L ++ N I+ PHI +A+ 
Sbjct: 230 YLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATV 289

Query: 327 WTREGMATLAALNVL 341
             R+ MA  AA N++
Sbjct: 290 EARDAMAKEAADNII 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  254 bits (652), Expect = 2e-83
 Identities = 128/312 (41%), Positives = 171/312 (54%), Gaps = 30/312 (9%)

Query: 32  LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI-GQLTEDWGETLFAALSRAGGKAF 90
           LL      V +    +  L+ E++I L+ D  DGVI G   +   E + AA  R   K  
Sbjct: 19  LLEAAGFEVVLNPLGR-PLTEEELIELLKD-ADGVIAG--LDPITEEVLAAAPRL--KVI 72

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           S   VGY+N+D+ AA K GI V NTPG  + + AEL   L LA AR+I +AD  +RAG  
Sbjct: 73  SRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG-- 130

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW     VG  L G+T+G+IG GRIG A AR +  GF M ++ YD Y            
Sbjct: 131 -GWDR--PVGTELYGKTLGIIGLGRIGKAVARRLS-GFGMKVLAYDPYPDE--------- 177

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
            +F K +G + V      S++E+L+E+D ISLH  L   T HLIN   LA MK  AIL+N
Sbjct: 178 -EFAKEHGVEFV------SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILIN 230

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTR 329
            +RG ++DE AL E LK   +    LDVFE+EP      L E+ N I+ PHI +++K   
Sbjct: 231 TARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAV 290

Query: 330 EGMATLAALNVL 341
             M T+AA NV+
Sbjct: 291 LRMGTMAAQNVI 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  245 bits (629), Expect = 9e-80
 Identities = 121/333 (36%), Positives = 173/333 (51%), Gaps = 29/333 (8%)

Query: 14  GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTED 73
            K  V+ST+ +P    +   +++   VE        L+ +  +A      D VI  + + 
Sbjct: 1   MKIVVLSTRKLP--PEVLERLKEKFEVERYEDD---LTPDTELAERLKDADAVITFVNDR 55

Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
               +   L     K  +  + GY+NVD+ AA + GI V N PG  TE  AE A +L LA
Sbjct: 56  IDAEVLEKLPGL--KLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILA 113

Query: 134 AARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
            ARRI E D  +R G +     P+  +G  L+G+T+G+IG GRIG A AR + +GF M +
Sbjct: 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRL-KGFGMKV 172

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD       EK      +++               +DE+L E+D+ISLH  L   T H
Sbjct: 173 LYYDRSPNPEAEK--ELGARYV--------------DLDELLAESDIISLHCPLTPETRH 216

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----G 308
           LIN E LA MK  AILVN +RG ++DE AL++ LK   +   GLDVFE+EP +       
Sbjct: 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLR 276

Query: 309 LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           L    N ++ PHIASA++  R+ MA LA  N+ 
Sbjct: 277 LDNFPNVVLTPHIASATEEARKAMAELALENLE 309

Length = 324

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  242 bits (619), Expect = 3e-78
 Identities = 137/331 (41%), Positives = 193/331 (58%), Gaps = 27/331 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E+   VE+   ++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITREIP-ENGIEML-EEHFEVEVWEDEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   +  +N AVGY+N+DV  A + GI V NTPGVLTE TA+ A +L LA 
Sbjct: 58  DCEVFEAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR+VEAD F+R+G +      W P +F+G  + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    EK + A                    ++E+LRE+D +SLH  L K T
Sbjct: 175 RILYYSRTRKPEAEKELGA----------------EYRPLEELLRESDFVSLHVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVL 341
            +KN ++ PHI SA+   REGMA L A N++
Sbjct: 279 SLKNVVLAPHIGSATFEAREGMAELVAENLI 309

Length = 333

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  240 bits (614), Expect = 8e-78
 Identities = 116/325 (35%), Positives = 160/325 (49%), Gaps = 52/325 (16%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           + LL E    V++       LS E+++A+I D  D +I     ++T +    +  A    
Sbjct: 13  LELLREAGIEVDV----APGLSEEELLAIIAD-ADALIVRSATKVTAE----VIEAAPRL 63

Query: 82  --LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
             + RAG        VG +N+DV AA   GI V N PG  T + AE   +L LA AR I 
Sbjct: 64  KVIGRAG--------VGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIP 115

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY- 198
           +AD  +RAG    W    F+G  L+G+T+G++G GRIG   AR     F M ++ YD Y 
Sbjct: 116 QADASLRAG---KWDRKKFMGVELRGKTLGIVGLGRIGREVARRAR-AFGMKVLAYDPYI 171

Query: 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
            A R                          S+DE+L EAD ISLH  L   T  LIN E 
Sbjct: 172 SAERAAAGGV-----------------ELVSLDELLAEADFISLHTPLTPETRGLINAEE 214

Query: 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAI 316
           LA MK  AIL+N +RG ++DE AL + LK   +    LDVFE EP       L  + N I
Sbjct: 215 LAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEP-PPADSPLLGLPNVI 273

Query: 317 VVPHIASASKWTREGMATLAALNVL 341
           + PH+ ++++  +E +A  AA  VL
Sbjct: 274 LTPHLGASTEEAQERVAVDAAEQVL 298

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  235 bits (601), Expect = 7e-76
 Identities = 107/295 (36%), Positives = 149/295 (50%), Gaps = 23/295 (7%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107
             L  +++ AL+ D  D +I   T      + A   +   K       G +N+D++AA K
Sbjct: 28  DDLLADELEALLAD-ADALIVSSTTPVTAEVLAKAPKL--KFIQVAGAGVDNIDLDAAKK 84

Query: 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167
            GI V N PG   E  AE A  L LA  RR+  AD  +R G    W    F G  L+G+T
Sbjct: 85  RGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAG--FPGYELEGKT 142

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG++G GRIG   A+ + + F M ++YYD  +    E+                    R 
Sbjct: 143 VGIVGLGRIGQRVAKRL-QAFGMKVLYYDRTRKPEPEED----------------LGFRV 185

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L ++DV+ LH  L   T HLIN+E LA MK  A+LVN +RG ++DE AL+  LK
Sbjct: 186 VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALK 245

Query: 288 QNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
              +    LDVFE EP      L E+ N I+ PHIA  ++  RE MA +A  N+ 
Sbjct: 246 SGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLE 300

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  218 bits (558), Expect = 4e-69
 Identities = 106/292 (36%), Positives = 145/292 (49%), Gaps = 25/292 (8%)

Query: 52  VEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIA 111
            E+ +       D +I  +T    E + AA      KA      G +N+D+ AA K GI 
Sbjct: 35  DEEELLEALADADALIVSVTP-VTEEVLAAAPN--LKAIGRAGAGVDNIDLEAATKRGIL 91

Query: 112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171
           V N PG    + AEL  +L LA ARRI +AD   R G    W    F G  L G+TVG+I
Sbjct: 92  VVNAPGGNAISVAELVLALLLALARRIPDADASQRRG---EWDRKAFRGTELAGKTVGII 148

Query: 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231
           G GRIG A A+ + + F M +I YD Y            G                 S+D
Sbjct: 149 GLGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAGVDGVVG---------------VDSLD 192

Query: 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291
           E+L EAD+++LH  L   T  LIN E LA MK  AIL+N +RG V+DE AL+  L    +
Sbjct: 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252

Query: 292 FRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
               LDVFE+EP +     L ++ N I+ PHI  ++   +E +A + A N++
Sbjct: 253 AGAALDVFEEEP-LPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIV 303

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  205 bits (523), Expect = 4e-64
 Identities = 92/247 (37%), Positives = 130/247 (52%), Gaps = 20/247 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           VG +N+DV  A K GI V NTPG  + + AEL   L L+ AR I  A+  M+ G    W 
Sbjct: 72  VGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLG---KWN 128

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              + G  L+G+T+G+IG GRIG   A++      MN+I YD Y        +       
Sbjct: 129 KKKYKGIELRGKTLGIIGFGRIGREVAKI-ARALGMNVIAYDPYPKDEQAVELGV----- 182

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                      +  S++E+L+ +D ISLH  L   T H+INK+ L  MK  AI++N SRG
Sbjct: 183 -----------KTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRG 231

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            VIDE AL+E LK   +    LDVFE+EP     L E+ N  + PHI +++K  +E +  
Sbjct: 232 GVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTKEAQERIGE 291

Query: 335 LAALNVL 341
             A  ++
Sbjct: 292 ELANKII 298

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  205 bits (524), Expect = 4e-64
 Identities = 99/277 (35%), Positives = 144/277 (51%), Gaps = 22/277 (7%)

Query: 65  GVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTA 124
           G  G   E+    L + L     K  ++   GY+ +DV+A  K GI V NTPG + E TA
Sbjct: 60  GETGPFDEE----LISPLP-PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATA 114

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           + A  L L A R    A+   RAG + G+L      +  +G+T+G++G G IG A AR  
Sbjct: 115 DTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDP-RGKTLGILGLGGIGKAIARKA 173

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
              F M +IY++  +     +   A                   S+DE+L ++DV+SL+ 
Sbjct: 174 A-AFGMKIIYHNRSRLPEELEKALA---------------TYYVSLDELLAQSDVVSLNC 217

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L   T HLINK+  A MK   I+VN +RG VIDE ALV+ L+   +   GLDVFE+EP 
Sbjct: 218 PLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPE 277

Query: 305 MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           + PGL +M N  ++PH+ + +  T+E M  L   N+ 
Sbjct: 278 VNPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIE 314

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  198 bits (507), Expect = 1e-61
 Identities = 99/279 (35%), Positives = 137/279 (49%), Gaps = 34/279 (12%)

Query: 53  EDIIALIGDKCDGVIGQ---LTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           +++I    D  D ++ Q   +T +    +  AL R   K      VG +NVDV AA + G
Sbjct: 36  DELIEAAAD-ADALLVQYAPVTAE----VIEALPR--LKVIVRYGVGVDNVDVAAATERG 88

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL--LKGQT 167
           I V N P   TE  A+ A +L LA AR++   D  +RAG +D  +     G +  L+G T
Sbjct: 89  IPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTV----GGPIRRLRGLT 144

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           +G++G GRIG A A+   + F   +I YD Y                  +G   +   R 
Sbjct: 145 LGLVGFGRIGRAVAKRA-KAFGFRVIAYDPY----------------VPDGVAALGGVRV 187

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L  +DV+SLH  L   T HLI+ E LA MK  A LVN +RG ++DE AL   LK
Sbjct: 188 VSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALK 247

Query: 288 QNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
              +    LDV E+EP      L    N I+ PH A  S
Sbjct: 248 SGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYS 286

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  197 bits (503), Expect = 5e-61
 Identities = 113/329 (34%), Positives = 159/329 (48%), Gaps = 32/329 (9%)

Query: 17  RVVSTKPMPGTRW--INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           +V+   P        +  L+     VE+     T   +++  AL+ D  D ++  + +  
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEV----VTAAELDEEAALLAD-ADVLVPGMRKVI 55

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L AA  R   +      VG + VD+ AA   GI V N PG   E+ AE A  L LA 
Sbjct: 56  DAELLAAAPRL--RLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLAL 113

Query: 135 ARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
            RR+ EAD  +RAG    W  P       L G+TVG++G G IG A AR +  GF + +I
Sbjct: 114 LRRLPEADRELRAG---RWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLR-GFGVEVI 169

Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253
           YYD               +F     E+     R   +DE+L E+DV+SLH  L   T HL
Sbjct: 170 YYD---------------RFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHL 214

Query: 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSE 311
           I  E LA MK  AIL+N +RG ++DE AL+  L+   +   GLDVF  EP + P   L  
Sbjct: 215 IGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEP-LPPDDPLLR 273

Query: 312 MKNAIVVPHIASASKWTREGMATLAALNV 340
           + N I+ PHIA  +  + + MA + A N+
Sbjct: 274 LDNVILTPHIAGVTDESYQRMAAIVAENI 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  189 bits (484), Expect = 5e-60
 Identities = 88/196 (44%), Positives = 109/196 (55%), Gaps = 24/196 (12%)

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           +L LA ARRI EAD  +RAG    W P+  +G  L G+TVG+IG GRIG A AR + + F
Sbjct: 2   ALLLALARRIPEADRQVRAG---RWRPDALLGRELSGKTVGIIGLGRIGRAVARRL-KAF 57

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M +I YD Y     E     Y                  S+DE+L E+DV+SLH  L  
Sbjct: 58  GMKVIAYDRYPKAEAEALGARY-----------------VSLDELLAESDVVSLHLPLTP 100

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG 308
            T HLIN ERLA MK  AIL+N +RG ++DE AL+  LK   +    LDVFE EP   P 
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPL-PPD 159

Query: 309 --LSEMKNAIVVPHIA 322
             L E+ N I+ PHIA
Sbjct: 160 HPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  191 bits (487), Expect = 2e-58
 Identities = 91/274 (33%), Positives = 136/274 (49%), Gaps = 34/274 (12%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            DGV+ Q T  + E ++  L+  G K  +  + G + +D++ A + G+ + N P      
Sbjct: 45  YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
            AE A + +L   R   E D  +  G +  W P L +G  ++  TVG+IG GRIGSA A+
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFR-WAPGL-IGREIRDLTVGIIGTGRIGSAAAK 162

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +GF   +I YD Y    LEKF+  Y                  S++++L++AD+ISL
Sbjct: 163 IF-KGFGAKVIAYDPYPNPELEKFLLYY-----------------DSLEDLLKQADIISL 204

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H  L K  +HLIN E  A MK  AILVN +RG ++D  AL++ L    +    LD +E+E
Sbjct: 205 HVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENE 264

Query: 303 -PYMKPGLS-------------EMKNAIVVPHIA 322
             Y     S              M N ++ PHIA
Sbjct: 265 TGYFNKDWSGKEIEDEVLKELIAMPNVLITPHIA 298

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  189 bits (482), Expect = 7e-58
 Identities = 93/309 (30%), Positives = 140/309 (45%), Gaps = 23/309 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           L+++   VE+  +    L  E+++    D  D +I + T      +  A      K  + 
Sbjct: 14  LLKEGGEVEVHDE----LLTEELLEAAKD-ADALIVRSTTPVTAEVLEAAPGL--KVIAR 66

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +N+D++AA + GI V N PG  TE+ AEL   L LA ARRI EAD  +RAG +  
Sbjct: 67  RGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKK 126

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
             P       L G+T+GVIG G IG   A +  +   M ++ YD Y      +       
Sbjct: 127 GGPIGL---ELYGKTLGVIGGGGIGGIGAAIA-KALGMGVVAYDPYPNPERAEEGGVEVL 182

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L               + ++    D+I+L P     T H+I  E    +K    + N  
Sbjct: 183 LLDLL------------LLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNAR 230

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 332
            G VI+E AL   L++         V E+ P +   L ++ N I+ PHIA A++  +E M
Sbjct: 231 GGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENM 290

Query: 333 ATLAALNVL 341
           A  AA N+L
Sbjct: 291 AEEAAENLL 299

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  194 bits (495), Expect = 1e-57
 Identities = 111/316 (35%), Positives = 153/316 (48%), Gaps = 64/316 (20%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG----QLTEDWGETLFAALS----- 83
           +++    VE+    KT L  E+++ +IGD  D +I     ++T +    +  A       
Sbjct: 16  ILKDAPGVEVDV--KTGLDKEELLEIIGD-YDALIVRSATKVTAE----VLEAAKNLKVI 68

Query: 84  -RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD 142
            RAG        VG +NVDV AA + GI V N P   T + AE   +L LA AR I +A 
Sbjct: 69  GRAG--------VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAH 120

Query: 143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR 202
             ++AG    W    F+G  L G+T+G+IG GRIGS  A+   + F M +I YD Y    
Sbjct: 121 ASLKAGK---WERKKFMGVELYGKTLGIIGLGRIGSEVAKRA-KAFGMKVIAYDPY---- 172

Query: 203 LEKFVTAYGQFLKANGEQPVTWKRASSM-------DEVLREADVISLHPVLDKTTYHLIN 255
                              ++ +RA+ +       DE+L  AD I+LH  L   T  LI 
Sbjct: 173 -------------------ISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIG 213

Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKN 314
            E LA MK    ++NC+RG +IDE AL E LK   +    LDVFE EP    P L E+ N
Sbjct: 214 AEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSP-LFELPN 272

Query: 315 AIVVPHIASASKWTRE 330
            +V PH+  AS  T E
Sbjct: 273 VVVTPHLG-AS--TAE 285

Length = 526

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  186 bits (474), Expect = 1e-56
 Identities = 94/251 (37%), Positives = 137/251 (54%), Gaps = 24/251 (9%)

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           ++  VGY+ +D++AA   GI V NTPGVLT+  A+LA  L LA  RRI  AD F+RAG  
Sbjct: 69  ASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAG-- 126

Query: 151 DGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
             W    F +   + G+ VG++G GRIG A AR  +E F M + Y+      R  K    
Sbjct: 127 -RWPKGAFPLTRKVSGKRVGIVGLGRIGRAIAR-RLEAFGMEIAYHG-----RRPK---- 175

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
                       V ++  +S+ E+  E+DV+ +       T HL+N E L  +  + +LV
Sbjct: 176 ----------PDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLV 225

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329
           N +RG V+DE AL+  L++  +   GLDVFE+EP +   L ++ N ++ PHIASA+  TR
Sbjct: 226 NVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETR 285

Query: 330 EGMATLAALNV 340
             M  L   N+
Sbjct: 286 RAMGDLVLANL 296

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  185 bits (472), Expect = 3e-56
 Identities = 98/279 (35%), Positives = 152/279 (54%), Gaps = 24/279 (8%)

Query: 66  VIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTA 124
           +I  +T ++ +  F        K  +   +GY+NVD+ AA ++G+ V   PG V  +  A
Sbjct: 51  IIASVTPNFDKEFFEYNDGL--KLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVA 108

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           E A +L L   R+I +A E ++ G +       FVG+ L G+TVG+IG G IGS  A ++
Sbjct: 109 EHAVALILTVLRKINQASEAVKEGKWT--ERANFVGHELSGKTVGIIGYGNIGSRVAEIL 166

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            EGF   ++ YD Y +           + +K  G +PV      S++E+L E+D+ISLH 
Sbjct: 167 KEGFNAKVLAYDPYVSE----------EVIKKKGAKPV------SLEELLAESDIISLHA 210

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L + TYH+IN++  + MKK  ILVN +RG +IDE AL+E LK   +   GLDV E+EP 
Sbjct: 211 PLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEP- 269

Query: 305 MKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           +K    L   +N ++ PHI + +  +  GM      ++ 
Sbjct: 270 IKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIE 308

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  184 bits (469), Expect = 5e-56
 Identities = 90/255 (35%), Positives = 132/255 (51%), Gaps = 30/255 (11%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY-- 150
           +A GYNNVD+ AA + GI V N PG  T++ A+   +L LA AR +   ++ ++AG +  
Sbjct: 72  LATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQK 131

Query: 151 -DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVT 208
              +    +    L G+T+G+IG G IG A AR+    F M +++ +   A  L E +V 
Sbjct: 132 SPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARI-ARAFGMKVLFAERKGAPPLREGYV- 189

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                               S+DE+L ++DVISLH  L   T +LIN E LA MK  AIL
Sbjct: 190 --------------------SLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAIL 229

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIVVPHIASAS 325
           +N +RG ++DE AL + L    +   GLDV   EP  +     L    N I+ PHIA AS
Sbjct: 230 INTARGGLVDEQALADALNSGKIAGAGLDVLSQEP-PRADNPLLKAAPNLIITPHIAWAS 288

Query: 326 KWTREGMATLAALNV 340
           +  R+ +  +   N+
Sbjct: 289 REARQRLMDILVDNI 303

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  181 bits (461), Expect = 1e-54
 Identities = 94/326 (28%), Positives = 141/326 (43%), Gaps = 41/326 (12%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
             +L      VEI T    +L+ ++   L     D ++   T+     L       G K 
Sbjct: 17  KEILKAGGVDVEIVT---YLLNDDETAELAKG-ADAILTAFTDKIDAELLDKA--PGLKF 70

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL 149
            S  A GY+N+D++ A + GI V N P       AE   +L LA  R     DE  +   
Sbjct: 71  ISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQD 130

Query: 150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
                  +  G  L+ QTVGV+G G+IG A A+   +GF M +I YD ++   LE     
Sbjct: 131 LQ-DAGVI--GRELEDQTVGVVGTGKIGRAVAQRA-KGFGMKVIAYDPFRNPELEDKGVK 186

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
           Y                  S++E+ + +D+ISLH  L    +H+IN+E    MKK  I++
Sbjct: 187 Y-----------------VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIII 229

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------------KPGLSEMKNA 315
           N +RG ++D  AL+E L    +F  GLDV EDE                    L    N 
Sbjct: 230 NTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNV 289

Query: 316 IVVPHIASASKWTREGMATLAALNVL 341
           I+ PH A  +    + M  ++  N++
Sbjct: 290 IITPHTAFYTDDALKNMVEISCENIV 315

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  178 bits (454), Expect = 9e-54
 Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 21/233 (9%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  NVDV AA + GI V NTPG   E  AE    L LA  R I  A   ++ G +     
Sbjct: 77  GPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYY 136

Query: 156 NL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           N    G  L+G+TVG++G G IG   A+ + + F   ++ YD         +V    + +
Sbjct: 137 NYDGYGPELRGKTVGIVGFGAIGRRVAKRL-KAFGAEVLVYD--------PYVDP--EKI 185

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           +A+G + V      S++E+L+ +DV+SLH  L   T  +I  E  A MK  A  +N +R 
Sbjct: 186 EADGVKKV------SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARA 239

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASAS 325
            ++DE AL+E L++  +    LDVF +EP +     L ++ N  + PHIA A+
Sbjct: 240 GLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGAT 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  178 bits (452), Expect = 2e-53
 Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 26/282 (9%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGK--AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTE 121
           +G++G      GE + AAL     K  A S ++VGY+N DV+A     I + +TP VLTE
Sbjct: 47  EGLLGS-----GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTE 101

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           T A+   +L L+ ARR+VE  E ++AG +   +   + G  +  +T+G++G GRIG A A
Sbjct: 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALA 161

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           +    GF M ++Y         E+   A                R   +D +L+E+D + 
Sbjct: 162 QRAHFGFNMPILYNARRHHKEAEERFNA----------------RYCDLDTLLQESDFVC 205

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +   L   T+HL   E+ A MK  AI +N  RGPV+DE AL+  L++  +   GLDVFE 
Sbjct: 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQ 265

Query: 302 EPYMK--PGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           EP     P LS + N + VPHI SA+  TR  MA  A  N++
Sbjct: 266 EPLSVDSPLLS-LPNVVAVPHIGSATHETRYNMAACAVDNLI 306

Length = 323

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  181 bits (461), Expect = 1e-52
 Identities = 116/340 (34%), Positives = 172/340 (50%), Gaps = 57/340 (16%)

Query: 17  RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLT 71
           +V+   P+ P    I++L +    V++    +T LS E+++ +I D  D +I     ++T
Sbjct: 1   KVLIADPISPDG--IDILEDVGVEVDV----QTGLSREELLEIIPDY-DALIVRSATKVT 53

Query: 72  EDWGETLFAALS------RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAE 125
           E+    + AA        RAG        VG +N+D+ AA   GI V N P   T + AE
Sbjct: 54  EE----VIAAAPKLKVIGRAG--------VGVDNIDIEAATARGILVVNAPTGNTISAAE 101

Query: 126 LAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV 185
            A ++ LAAAR I +AD  ++ G    W    F+G  L G+T+GVIG GRIGS  A+   
Sbjct: 102 HALAMLLAAARNIPQADASLKEG---EWDRKAFMGTELYGKTLGVIGLGRIGSIVAKR-A 157

Query: 186 EGFKMNLIYYDLY----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           + F M ++ YD Y    +A +L                     +    +DE+L  AD I+
Sbjct: 158 KAFGMKVLAYDPYISPERAEQL-------------------GVELVDDLDELLARADFIT 198

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +H  L   T  LI  E LA MKK  I+VNC+RG +IDE AL E L++  +    LDVFE 
Sbjct: 199 VHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEK 258

Query: 302 EPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           EP     L ++ N I  PH+ ++++  +E +AT  A  VL
Sbjct: 259 EPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVL 298

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  175 bits (447), Expect = 1e-52
 Identities = 112/334 (33%), Positives = 153/334 (45%), Gaps = 32/334 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +VV T  +     + LL +  C V      +  LS E+++    D  DG++  + +    
Sbjct: 3   KVVITHKVH-PEVLELL-KPHCEVISNQTDEP-LSREELLRRCKD-ADGLMAFMPDRIDA 58

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
               A  R   K  +    GY+N DV A    GI V   P +LTE TAEL   L +   R
Sbjct: 59  DFLDACPRL--KIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
            I+  D F+R+G + GW P  + G  L G+TVG++G G +G A AR +  GF   L+YYD
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLS-GFGATLLYYD 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                       A  Q L           R   +DE+L  +D + L   L   T HLIN 
Sbjct: 175 ------PHPLDQAEEQALNL---------RRVELDELLESSDFLVLALPLTPDTLHLINA 219

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP--------G 308
           E LA MK  A+LVN  RG V+DE A+ E LK   +     DVFE E + +P         
Sbjct: 220 EALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQE 279

Query: 309 LSEMK-NAIVVPHIASASKWTREGMATLAALNVL 341
           L +     +  PHI SA    R  +   AALN+L
Sbjct: 280 LLDQHDRTVFTPHIGSAVDEVRLEIELEAALNIL 313

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  170 bits (432), Expect = 2e-50
 Identities = 90/244 (36%), Positives = 127/244 (52%), Gaps = 27/244 (11%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD+ A  + GI V N  G  TE  AEL   L++   R IV  D  +RAG      
Sbjct: 78  TGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAG----GT 133

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
               +G  L G+TVG++G G IG   AR+  + F   ++ Y      R EK      +  
Sbjct: 134 KAGLIGRELAGKTVGIVGTGAIGLRVARL-FKAFGCKVLAYS-----RSEK------EEA 181

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           KA G   + +    S+DE+L E+D++SLH  L+  T  LI KE+LA MK+ AIL+N +RG
Sbjct: 182 KALG---IEYV---SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARG 235

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGM 332
           PV+D  AL + L +  +   G+DVF+ EP +     L    N I+ PH+A A   T E M
Sbjct: 236 PVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFA---TEEAM 292

Query: 333 ATLA 336
              A
Sbjct: 293 EKRA 296

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  167 bits (426), Expect = 2e-49
 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 21/207 (10%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G+NNVD+ AA + GI V   P       AE A +L LA  R+I  A   +R G +   L 
Sbjct: 78  GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFS--LD 135

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
            L +G  L G+TVGVIG G+IG A+AR++  GF   ++ YD Y    L K    Y     
Sbjct: 136 GL-LGFDLHGKTVGVIGTGKIGQAFARILK-GFGCRVLAYDPYPNPELAKLGVEYV---- 189

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
                         +DE+L E+D+ISLH  L   T+HLIN E +A MK   +L+N SRG 
Sbjct: 190 -------------DLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGG 236

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE 302
           +ID  AL+E LK   +  +GLDV+E+E
Sbjct: 237 LIDTKALIEALKSGKIGGLGLDVYEEE 263

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  165 bits (421), Expect = 1e-48
 Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 53/255 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE------FMRAG 148
            G++++D+ A  + GIAV N P     T AE A +L LA +R++ EA E      F +AG
Sbjct: 72  TGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAG 131

Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           L          G  L G+T+GV+G GRIG   AR+   GF M ++ YD+      E+   
Sbjct: 132 L---------RGFELAGKTLGVVGTGRIGRRVARIAR-GFGMKVLAYDVVPD---EELAE 178

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
             G              R  S++E+L+E+D+ISLH      T+HLIN+E  A MK  A+L
Sbjct: 179 RLGF-------------RYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVL 225

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-------------------- 308
           +N +RG V+D  ALV  LK+  +   GLDV E E  ++                      
Sbjct: 226 INTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADH 285

Query: 309 -LSEMKNAIVVPHIA 322
            L    N I+ PH+A
Sbjct: 286 ALLRKPNVIITPHVA 300

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  161 bits (409), Expect = 4e-47
 Identities = 87/247 (35%), Positives = 121/247 (48%), Gaps = 33/247 (13%)

Query: 81  ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
           A++RAG         G NN+DV+AA+K GI V NTPG      AEL  ++ LA +R I++
Sbjct: 53  AIARAG--------AGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQ 104

Query: 141 ADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           A +++  G  D            FVG  L+G+T+GVIG G IG   A        M +I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANA-ALALGMKVIG 163

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y +      ++   Q             R +S++E+L  AD I+LH  L   T  LI
Sbjct: 164 YDPYLSVEAAWKLSVEVQ-------------RVTSLEELLATADYITLHVPLTDETRGLI 210

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N E LA MK  AIL+N +RG ++DE AL+E L +  +     D  E        L  + N
Sbjct: 211 NAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA-----LLGHLPN 265

Query: 315 AIVVPHI 321
            I  PH+
Sbjct: 266 VIATPHL 272

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  160 bits (407), Expect = 9e-47
 Identities = 85/236 (36%), Positives = 117/236 (49%), Gaps = 23/236 (9%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +   ++D+ AA + GI V  T G     TAEL  +L LA AR + E D  +RA
Sbjct: 71  KLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALARNLPEEDAALRA 129

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G   GW   L  G  L G+T+G++G GRIG+  AR+  + F M                V
Sbjct: 130 G---GWQTTL--GTGLAGKTLGIVGLGRIGARVARIG-QAFGMR---------------V 168

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A+   L A        + A S +E+   +DV+SLH VL   T  L+  E LA MK  A+
Sbjct: 169 IAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTAL 228

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAIVVPHIA 322
           LVN SRGP++DE AL+  L+   +    LDVF+ EP      L  + N ++ PHI 
Sbjct: 229 LVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIG 284

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  156 bits (398), Expect = 2e-45
 Identities = 91/298 (30%), Positives = 134/298 (44%), Gaps = 49/298 (16%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVN 103
           T  K  L++E+     G     ++G         L   L  AG K  S  ++GY+++D++
Sbjct: 28  TLTKEPLTLENAHLAEGYDGISILG--KSKISAELLEKLKEAGVKYISTRSIGYDHIDLD 85

Query: 104 AANKYGIAVGNTP----GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           AA + GI V N       V     A+    L L A R+  +     RA + D  L  L  
Sbjct: 86  AAKELGIKVSNVTYSPNSV-----ADYTVMLMLMALRKYKQI--MKRAEVNDYSLGGL-Q 137

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+  TVGVIG GRIG A  + +  GF   ++ YD Y    ++K+   Y         
Sbjct: 138 GRELRNLTVGVIGTGRIGQAVIKNL-SGFGCKILAYDPYPNEEVKKYAE-Y--------- 186

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
                     +D + +E+D+I+LH  L + TYHLINKE +A MK   I++N +RG +ID 
Sbjct: 187 --------VDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDT 238

Query: 280 VALVEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIA 322
            AL+E L+   +    LDV E E                 +   L    N I+ PH+A
Sbjct: 239 EALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI-LRSFPNVILTPHMA 295

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  152 bits (387), Expect = 7e-44
 Identities = 81/256 (31%), Positives = 119/256 (46%), Gaps = 28/256 (10%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G +++ +    + G+ V N  G  +   AE A +L LA A+RIVE D  +R G++ G
Sbjct: 67  PSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHG 124

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
                     L+G+TVG++G G IG   AR++ + F M                V    +
Sbjct: 125 RAGEEPESKELRGKTVGILGYGHIGREIARLL-KAFGMR---------------VIGVSR 168

Query: 213 FLKANGEQPVTWKRASSM-DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             K   ++   +    S  DE L +ADV+ +   L K T  LI    LA MK  AILVN 
Sbjct: 169 SPKE--DEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNV 226

Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF----EDEPYMKP---GLSEMKNAIVVPHIASA 324
            RGPV+DE AL E LK+ P+    +DV+         + P      E+ N I+ PH A  
Sbjct: 227 GRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGW 286

Query: 325 SKWTREGMATLAALNV 340
           ++ T       AA N+
Sbjct: 287 TEETFRRRIDEAAENI 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  144 bits (366), Expect = 1e-40
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 24/231 (10%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
           GI V +      E  AE   +  L A RRI       RAG  D   P    G  L G+TV
Sbjct: 95  GILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAG-RDWGWPTRRGGRGLYGRTV 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A   + +  F + ++ YD         ++ A      A G          
Sbjct: 154 GIVGFGRIGRAVVEL-LRPFGLRVLVYD--------PYLPA--AEAAALGV------ELV 196

Query: 229 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           S+DE+L  +DV+SLH P+  +T   +I+   LA M+  A  +N +RG ++DE AL+  L+
Sbjct: 197 SLDELLARSDVVSLHAPLTPETR-GMIDARLLALMRDGATFINTARGALVDEAALLAELR 255

Query: 288 QNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLA 336
                R  LDV + EP + P   L  + N ++ PHIA ++   R  +   A
Sbjct: 256 SG-RLRAALDVTDPEP-LPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYA 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  142 bits (360), Expect = 7e-40
 Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 34/258 (13%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            A G NNVD+  A K GIAV N  G  TE+ A+   ++ L+   RI   D ++++G Y  
Sbjct: 70  TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSE 129

Query: 153 WLPNLFVG-----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
               +F         +KG+  G+IG G IG   A++  + F   ++YY      + E++ 
Sbjct: 130 --SPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI-AQAFGAKVVYYSTSGKNKNEEY- 185

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                                S++E+L+ +D+IS+H  L++ T +LI  + L  +K  AI
Sbjct: 186 ------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNA---IVVPHIA 322
           L+N  RG +++E  L + L +  +   GLDV E EP  K  P LS +KN    ++ PHIA
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLS-IKNKEKLLITPHIA 285

Query: 323 SASKWTREGMATLAALNV 340
            ASK  R+ +      N+
Sbjct: 286 WASKEARKTLIEKVKENI 303

Length = 311

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  138 bits (351), Expect = 1e-38
 Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 29/233 (12%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P   T + AEL     +  ARR+ + +     G    W 
Sbjct: 73  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---IWN 129

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
            +    + ++G+T+G+IG G IGS  + +  E   M +I+YD+  A +L       G   
Sbjct: 130 KSATGSHEVRGKTLGIIGYGHIGSQLSVL-AEALGMRVIFYDI--AEKL-----PLG--- 178

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                     ++ SS++E+L EAD ++LH     +T ++I  E +A MKK AIL+N SRG
Sbjct: 179 --------NARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            V+D  AL E L+   +    +DVF        EP+  P L  + N I+ PHI
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSP-LQGLPNVILTPHI 282

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  135 bits (342), Expect = 5e-37
 Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 48/232 (20%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAE-LAASLSLAAARRIVEADEFMRAGLYDGWL 154
           G +++D +   + GI   N PG    + AE + ++L + A R+                 
Sbjct: 67  GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQ----------------- 109

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  LKG+TVG++G G +GS  AR  +E   MN++  D  +A              
Sbjct: 110 -----GFSLKGKTVGIVGVGNVGSRLARR-LEALGMNVLLCDPPRAEAEGDPGFV----- 158

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVN 270
                         S++E+L EAD+I+LH  L +     TYHL++++ LA +K   IL+N
Sbjct: 159 --------------SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILIN 204

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
            SRG VID  AL+  L++    RV LDV+E+EP +   L + K  I  PHIA
Sbjct: 205 ASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLELLD-KVDIATPHIA 255

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  127 bits (321), Expect = 4e-34
 Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 28/256 (10%)

Query: 50  LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           L+ E++    G   D VI +      +         G K      VG+N++D+ AA + G
Sbjct: 34  LNDENVHLAKG--HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELG 91

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQT 167
             +   P       AELA +L++  +R             +  D   P +F    ++  T
Sbjct: 92  FKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVD---PFMF-SKEIRNST 147

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG+IG GRIG   A++  +G    +I YD+Y +   +  VT                   
Sbjct: 148 VGIIGTGRIGLTAAKLF-KGLGAKVIGYDIYPSDAAKDVVTFV----------------- 189

Query: 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            S+DE+L+++D+ISLH P +      LINKE ++ MK  AIL+N +RG + DE A++E L
Sbjct: 190 -SLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEAL 248

Query: 287 KQNPMFRVGLDVFEDE 302
           +   +   G DV  +E
Sbjct: 249 ESGKLAGFGTDVLNNE 264

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  124 bits (315), Expect = 1e-32
 Identities = 93/288 (32%), Positives = 137/288 (47%), Gaps = 46/288 (15%)

Query: 47  KTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAALSR--AGGKAFSNMAVGYNN 99
           K  L  E++I  I D     IG     QLTE+    + AA  +  A G  F    +G N 
Sbjct: 39  KGALDEEELIEAIKDA--HFIGIRSRTQLTEE----VLAAAEKLVAIG-CFC---IGTNQ 88

Query: 100 VDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           VD++AA K GI V N P   T + AEL     +   R I E +     G   GW  +   
Sbjct: 89  VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG---GWNKSAAG 145

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
              ++G+T+G++G G IG+  + ++ E   M + +YD+    +L       G     N  
Sbjct: 146 SFEVRGKTLGIVGYGHIGTQLS-VLAESLGMRVYFYDI--EDKL-----PLG-----NAR 192

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
           Q        S++E+L ++DV+SLH     +T ++I  E LA MK  AIL+N SRG V+D 
Sbjct: 193 Q------VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246

Query: 280 VALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            AL + LK   +    +DVF        +P+  P L  + N I+ PHI
Sbjct: 247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESP-LRGLDNVILTPHI 293

Length = 409

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  120 bits (304), Expect = 8e-32
 Identities = 81/259 (31%), Positives = 121/259 (46%), Gaps = 40/259 (15%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GI V N  G  T + A+   +L LA A R+ +  + + AG    W
Sbjct: 74  ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAG---RW 130

Query: 154 -------LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
                  L + F    L+G+T+G++G G +G A AR+  E F M ++             
Sbjct: 131 QQSSQFCLLD-FPIVELEGKTLGLLGHGELGGAVARL-AEAFGMRVLI------------ 176

Query: 207 VTAYGQFLKANGEQPVTWKRASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                      G+ P    R   +  DE+L + D ++LH  L + T HLI    LA MK 
Sbjct: 177 -----------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSE-MKNAIVVPHI 321
            A+L+N +RG ++DE AL + L+   +     DV   EP +   P L+  +   IV PH 
Sbjct: 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS 285

Query: 322 ASASKWTREGMATLAALNV 340
           A  S+  R+ +    A N 
Sbjct: 286 AWGSREARQRIVGQLAENA 304

Length = 317

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  120 bits (302), Expect = 1e-31
 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 41/246 (16%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GIAV N  G  + T  E    +  A    ++    + R  L D W
Sbjct: 73  ATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMG---WYRDQLSDRW 129

Query: 154 LPNLFVGNL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                             ++G T+GV G G +G+   R+  +   M ++Y +   A+   
Sbjct: 130 ATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRL-AQALGMKVLYAEHKGASVCR 185

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
           +  T +                    +EVL++AD+++LH  L +TT +LIN E LA MK 
Sbjct: 186 EGYTPF--------------------EEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNAIVVP 319
            A L+N  RGP++DE AL++ L+   +    LDV   EP  K          + N ++ P
Sbjct: 226 TAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITP 285

Query: 320 HIASAS 325
           HIA AS
Sbjct: 286 HIAWAS 291

Length = 314

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score =  117 bits (295), Expect = 2e-30
 Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 35/274 (12%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETT 123
           DG+         E ++  L+  G K  +  + G++  D+  A KY + + N P    E+ 
Sbjct: 47  DGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESI 106

Query: 124 AELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
           AE   + ++   R   +    +R   +D  W P + +   +K   V VIG GRIG A A+
Sbjct: 107 AEFTVTQAINLVRHFNQIQTKVR--EHDFRWEPPI-LSRSIKDLKVAVIGTGRIGLAVAK 163

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +G+  +++ YD +   +   +V                     +++E +  AD+++L
Sbjct: 164 IFAKGYGSDVVAYDPFPNAKAATYVD-----------------YKDTIEEAVEGADIVTL 206

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H    K  ++L N +     KK A+ VNC+RG ++D  AL++ L    +    LD +E E
Sbjct: 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFE 266

Query: 303 PYMKPG--------------LSEMKNAIVVPHIA 322
             + P               L   ++ I+ PHIA
Sbjct: 267 RPLFPSDQRGQTINDPLLESLINREDVILTPHIA 300

Length = 332

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  116 bits (292), Expect = 4e-30
 Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 36/245 (14%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  N+D+  A + GI + N P    +   E A  + LA   ++  AD+ +R G+   W  
Sbjct: 72  GLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI---WDR 128

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
               G  L G+TVG+IG G +G A+A+ +  GF   +I YD Y+             F  
Sbjct: 129 EGNRGVELMGKTVGIIGYGNMGKAFAKRL-SGFGCKVIAYDKYK------------NFGD 175

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
           A  EQ        S++ + +EAD++SLH  L   T  ++NKE +++ KK    +N +RG 
Sbjct: 176 AYAEQ-------VSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPG----LSEMKNAIVVPHIASAS 325
           V+    LV+ LK   +    LDV E E       + +P     L +    I+ PHIA   
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAG-- 286

Query: 326 KWTRE 330
            WT E
Sbjct: 287 -WTFE 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  116 bits (293), Expect = 4e-30
 Identities = 71/258 (27%), Positives = 104/258 (40%), Gaps = 39/258 (15%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + +      +  + + N  G+     AE      LA AR++              
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR--- 122

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-- 210
           W     V   L G+TV ++G G IG   AR   + F M                V     
Sbjct: 123 WQRRGPVR-ELAGKTVLIVGLGDIGREIARRA-KAFGMR---------------VIGVRR 165

Query: 211 -GQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAIL 268
            G+      ++  T      +DE+L EAD V++  P L   T  L N ER A MK  A+L
Sbjct: 166 SGRPAPPVVDEVYT---PDELDELLPEADYVVNALP-LTPETRGLFNAERFAAMKPGAVL 221

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIA 322
           +N  RG V+DE AL+E L+   +    LDVFE+EP     L        + N I+ PHI+
Sbjct: 222 INVGRGSVVDEDALIEALESGRIAGAALDVFEEEP-----LPADSPLWDLPNVIITPHIS 276

Query: 323 SASKWTREGMATLAALNV 340
             S    E +  +   N+
Sbjct: 277 GDSPSYPERVVEIFLENL 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score =  111 bits (279), Expect = 4e-28
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 44/300 (14%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE---TLFAALSRAGGKAFSNMAVG 96
           VE+ T K+ +LS   +     D+     G  T  +G+    ++  L   G K  +    G
Sbjct: 26  VEVTTSKE-LLSSATV-----DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79

Query: 97  YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN 156
           ++  D++ A K+ I + N P    ET AE + S++L   RR  + +  ++A  +      
Sbjct: 80  FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE- 138

Query: 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA 216
             +   +K  TV +IG GRIG+A A++   GF   +  YD Y    L+        FL  
Sbjct: 139 -IMSKPVKNMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNKDLD--------FL-- 186

Query: 217 NGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
                 T+K   S+ E +++AD+ISLH   +K +YHL +K     +KK AILVN +RG V
Sbjct: 187 ------TYK--DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDE-PYM----------KPGLSEM---KNAIVVPHIA 322
           I+   L+  +    +    +D +E+E  Y              L E+   +  +V PHIA
Sbjct: 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIA 298

Length = 330

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  108 bits (273), Expect = 2e-27
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 26/230 (11%)

Query: 114 NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           N  G   ET AE A +L LA  R++       RA  +D       +  LL+G TV ++GA
Sbjct: 78  NAAGAYAETVAEHALALLLAGLRQLPA---RARATTWDPAEE-DDLVTLLRGSTVAIVGA 133

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           G IG A   ++   F   +I             V   G+     G        A  +DEV
Sbjct: 134 GGIGRALIPLLA-PFGAKVIA------------VNRSGR--PVEGADETV--PADRLDEV 176

Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
             +AD + L   L   T HL++   LA MK  A LVN +RGP++D  ALV+ L+   +  
Sbjct: 177 WPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAG 236

Query: 294 VGLDVFEDEPYMKPG---LSEMKNAIVVPHIASASKWTREGMATLAALNV 340
             LDV + EP   P    L  + NA++ PH+A+  +  R  +A   A NV
Sbjct: 237 AALDVTDPEPL--PDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENV 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  104 bits (262), Expect = 8e-26
 Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 46/242 (19%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + + +    K GI + N  G+ +   AE      L   + + +A +  +      
Sbjct: 67  YSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKK--- 123

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI----------YYDLYQATR 202
           W  +  +  L  G+T+  +G G IG   A+ + + F M +I          Y+D      
Sbjct: 124 WKMDSSLLEL-YGKTILFLGTGSIGQEIAKRL-KAFGMKVIGVNTSGRDVEYFD------ 175

Query: 203 LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLAT 261
            + +            E          +DEVL+EAD V+++ P L + T+HL ++     
Sbjct: 176 -KCY---------PLEE----------LDEVLKEADIVVNVLP-LTEETHHLFDEAFFEQ 214

Query: 262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVP 319
           MKK A+ +N  RGP +DE AL+E LK   +    LDVFE+EP  K  P L ++ N ++ P
Sbjct: 215 MKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSP-LWDLDNVLITP 273

Query: 320 HI 321
           HI
Sbjct: 274 HI 275

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score =  105 bits (264), Expect = 1e-25
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L  +T GV+GAG +G    R++  G    ++  D  +           G F+        
Sbjct: 114 LAERTYGVVGAGHVGGRLVRVL-RGLGWKVLVCDPPRQEAEGD-----GDFV-------- 159

Query: 223 TWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVID 278
                 S++ +L E DVISLH  L K     T HL+++  LA+++  A L+N SRG V+D
Sbjct: 160 ------SLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213

Query: 279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
             AL E L         LDV+E EP +   L++    I  PHIA  S
Sbjct: 214 NQALREALLSGEDLDAVLDVWEGEPQIDLELAD-LCTIATPHIAGYS 259

Length = 381

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  102 bits (257), Expect = 7e-25
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGLYD 151
           VG   VDV+AA K+GI V   P   T    + AE+A  L L   R+  E    ++A    
Sbjct: 91  VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150

Query: 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR---LEKFVT 208
              P   +G+ L G+TV ++G G IG   A+ +   F + L+      ATR     +   
Sbjct: 151 E--P---IGDTLFGKTVFILGYGAIGIELAKRL-RPFGVKLL------ATRRSWTSEPED 198

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                     +          + E   EAD++ L   L K T  ++N E L++MKK A+L
Sbjct: 199 GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALL 258

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           VN +RG ++D  A++  L+   +  + +DV   EP+  P   + +  N I+ PH+A
Sbjct: 259 VNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF-DPDDPILKHPNVIITPHVA 313

Length = 347

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  100 bits (251), Expect = 4e-24
 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AAN  GI V    G    + AE    + L   R  V   E    G   GW 
Sbjct: 93  IGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEG---GWN 149

Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     L+G+TVG +GAGRIG    R + + F ++L+YYD ++             
Sbjct: 150 VADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL-KPFDVHLLYYDRHR------------- 195

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L    E+ +   R + +++++ + DV++++  L   T  L NKE L+ MKK A LVN +
Sbjct: 196 -LPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTA 254

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+ E L+   +     DV+  +P  K  P    M N  + PHI+  +
Sbjct: 255 RGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHP-WRTMPNNAMTPHISGTT 308

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 35/241 (14%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA+++GI V    G  + + AE    + LA  R    +      G   GW 
Sbjct: 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG---GW- 178

Query: 155 PNLF-VGNL---LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            N+    +    L+G TVG++GAGRIG A  R + + F + L Y D ++           
Sbjct: 179 -NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPFDVKLHYTDRHR----------- 225

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              L    EQ +      S D ++   DV+++H  L   T HL + + L+ MK+ + LVN
Sbjct: 226 ---LPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIASA 324
            +RG ++D  A+V  L+   +     DV+       D P+       M    + PHI+  
Sbjct: 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRT-----MPRNGMTPHISGT 337

Query: 325 S 325
           +
Sbjct: 338 T 338

Length = 385

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQT 167
           G+ + N  GV   +TAELA +L LA+ R +         G ++    P+L        + 
Sbjct: 81  GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSL------ADRR 134

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTW 224
           V ++G G IG A  R                   RL  F   VT   +  +  GEQ    
Sbjct: 135 VLIVGYGSIGRAIER-------------------RLAPFEVRVTRVARTARP-GEQVHGI 174

Query: 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
                +  +L EADV+ L   L   T  L++ E LA M   A+LVN +RGPV+D  ALV 
Sbjct: 175 ---DELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVA 231

Query: 285 HLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAA 337
            L    + R  LDV + EP + PG  L      ++ PH+  A+         L  
Sbjct: 232 ELASGRL-RAALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVR 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 83.4 bits (206), Expect = 3e-18
 Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 28/235 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K   +++ G +++DV+   +  + + +  G  + + AE A +L LA A+ I E +  M+ 
Sbjct: 51  KMIQSLSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKN 109

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G +    P      LL  +++G++G G IG   A ++ + F MN+  Y     TR     
Sbjct: 110 GNFKQ-SPT----KLLYNKSLGILGYGGIGRRVA-LLAKAFGMNIYAY-----TR----- 153

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
           +     + +   +P         +++++++D + +   L   T  +IN + L+  +K   
Sbjct: 154 SYVNDGISSIYMEP---------EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLA 204

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
           ++N +R  V+D+  ++  L+ +       DV+ +EP +    +   N I+ PH+A
Sbjct: 205 IINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE--TNPDNVILSPHVA 257

Length = 303

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 80.7 bits (199), Expect = 7e-17
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 41/241 (17%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI------VEADEFMRAG 148
           +G +++D+ AA   G+ V    G    + AE      L   R        V + E+  AG
Sbjct: 130 IGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189

Query: 149 L----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRL 203
           +    YD           L+G+TVG +GAGRIG    + + + F  NL+Y+D L     L
Sbjct: 190 IAYRAYD-----------LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKMDPEL 237

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK   A               K    +D +L + DV+ ++  L + T  + NKER+A MK
Sbjct: 238 EKETGA---------------KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMK 282

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHI 321
           K  ++VN +RG ++D  A+ +      +   G DV+  +P  K  P    M N  + PHI
Sbjct: 283 KGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY-MPNHAMTPHI 341

Query: 322 A 322
           +
Sbjct: 342 S 342

Length = 386

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 74.8 bits (185), Expect = 3e-15
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 37/215 (17%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           L +  AE   +  L   R +       R G+   W P          + VGV+G G +G+
Sbjct: 91  LAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV---WKPLPQR--PAAERRVGVLGLGELGA 145

Query: 179 AYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237
           A AR +   GF                  V+ + +  K + E    +     +D  L + 
Sbjct: 146 AVARRLAALGFP-----------------VSGWSRSPK-DIEGVTCFHGEEGLDAFLAQT 187

Query: 238 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           D+ + L P+  +T   ++N E LA + + A L+N  RGP + E  L+  L    +    L
Sbjct: 188 DILVCLLPLTPETR-GILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVL 246

Query: 297 DVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
           DVFE EP     L             V PHIA+ +
Sbjct: 247 DVFEQEP-----LPADHPLWRHPRVTVTPHIAAIT 276

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 75.3 bits (185), Expect = 4e-15
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L  +TVG++G G +G      + E   +  +  D  +A R ++     G F      
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARL-EALGIKTLLCDPPRADRGDE-----GDF------ 158

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    S+DE+++EAD+++ H  L K     T HL +++ + ++K  AIL+N  RG 
Sbjct: 159 --------RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA 210

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 333
           V+D  AL+  L +     V LDV+E EP +   L + K  I  PHIA    +T EG A
Sbjct: 211 VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLK-KVDIGTPHIAG---YTLEGKA 264

Length = 378

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 66/213 (30%), Positives = 89/213 (41%), Gaps = 35/213 (16%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWL-------PNLFVGNLLKGQTVGVIGAG 174
           T AE   +L LAA RR+ E  E  R   + G L       P   +  LL G  V + G G
Sbjct: 94  TVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLL-GARVLIWGFG 152

Query: 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMD 231
            IG   A ++                T L   VT   +   + GE+   PV       + 
Sbjct: 153 SIGQRLAPLL----------------TALGARVTGVAR---SAGERAGFPVV--AEDELP 191

Query: 232 EVLREADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290
           E+L E DV + + P    T  H ++ E LA + K A +VN  RG  +DE ALV  L+   
Sbjct: 192 ELLPETDVLVMILPATPSTA-HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGR 250

Query: 291 MFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIA 322
           +    LDV   EP      L +  N I+ PH A
Sbjct: 251 LGGAALDVTATEPLPASSPLWDAPNLILTPHAA 283

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169
           + +    G+     AE      L  +   ++  E  +   +        V + + G+ VG
Sbjct: 79  VPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSV-GKRVG 137

Query: 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGEQPVT 223
           ++G G IG   AR+      M +  Y        E        V   G     +G  P  
Sbjct: 138 ILGYGSIGRQTARLAQ-ALGMEVYAYTRSPRPTPESRKDDGYIVPGTGD---PDGSIPSA 193

Query: 224 W---KRASSMDEVLREA-D--VISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPV 276
           W      +S+ E LR+  D  V+SL P+   T  HL+  E    + K++  + N +RG +
Sbjct: 194 WFSGTDKASLHEFLRQDLDLLVVSL-PLTPATK-HLLGAEEFEILAKRKTFVSNIARGSL 251

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 326
           +D  ALV  L+   +    LDV + EP +     L    N I+ PH++  ++
Sbjct: 252 VDTDALVAALESGQIRGAALDVTDPEP-LPADHPLWSAPNVIITPHVSWQTQ 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 45/234 (19%)

Query: 117 GVLTETTAELAASLSLAAARRI----VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
           GV  E  AE   +  LAAA+R+    V+  E         W         L G T+G++G
Sbjct: 93  GVAAEAIAEFVLAAILAAAKRLPEIWVKGAEQ--------WRRE--PLGSLAGSTLGIVG 142

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG A AR  +    M ++      A R        G+     G +      A+ + E
Sbjct: 143 FGAIGQALARRAL-ALGMRVL------ALRRS------GRPSDVPGVE-----AAADLAE 184

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +   +D + L   L   T HLIN + LA  K    L+N +RG ++D+ AL+E L    + 
Sbjct: 185 LFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRIS 244

Query: 293 RVGLDVFEDEP-------YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALN 339
              LDV + EP       Y  P +       + PH ++ +   R  +A     N
Sbjct: 245 LASLDVTDPEPLPEGHPLYTHPRVR------LSPHTSAIAPDGRRNLADRFLEN 292

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 65.7 bits (160), Expect = 4e-12
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAAN-KYGIAVGNTPGVLTETT---AELAASLSLAAA 135
           A + + G +      +G ++ D+  A  + G+      GV        +  A  LS+   
Sbjct: 81  ALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFI 140

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
            R +E  +  R G              + G+TV V+GAG +G   A+M+  G    ++  
Sbjct: 141 ARFLEVQQPGRLGGAPD----------VAGKTVVVVGAGVVGKEAAQMLR-GLGAQVLIT 189

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLI 254
           D+      +               + +  K    ++E L EADVI     +  K    L+
Sbjct: 190 DINVEALEQ--------------LEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILV 235

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +E +  MK  +++VN + G V    AL   L
Sbjct: 236 PEELVEQMKPGSVIVNVAVGAVGCVQALHTQL 267

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 48/196 (24%), Positives = 68/196 (34%), Gaps = 44/196 (22%)

Query: 99  NVDVNAANKYGIAVGNT-----PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           NVD+ AA + GI V         GV+    +EL         R +              W
Sbjct: 85  NVDIAAARENGITVTGIRDYGDEGVVEYVISELI--------RLLHGFGGKQ-------W 129

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                    L G  VG+IG G  G   A  +   F  ++ YY   +    E     Y   
Sbjct: 130 KE---EPRELTGLKVGIIGLGTTGQMIADAL-SFFGADVYYYSRTRKPDAEAKGIRY--- 182

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
                  P        ++E+L+  DVI     L K    L+ +E    +    IL N S 
Sbjct: 183 ------LP--------LNELLKTVDVICTC--LPKNVI-LLGEEEFELLGDGKILFNTSL 225

Query: 274 GPVIDEVALVEHLKQN 289
           GP  +  AL + LK +
Sbjct: 226 GPSFEVEALKKWLKAS 241

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT 223
               V +IGAG +G   A++       N++ YD+ +            + ++  G   + 
Sbjct: 161 PPAKVLIIGAGVVGLGAAKIAK-KLGANVLVYDIKEEKL---------KGVETLGGSRLR 210

Query: 224 WKRASSMDEVLREADVI---SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
           + +   +++ L++ D++    L          LI +E +  MK+ A++V+ +
Sbjct: 211 YSQKEELEKELKQTDILINAILVD--GPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
PLN02306	386	hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.98
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.89
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.85
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.73
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.7
PLN02494	477	adenosylhomocysteinase	99.69
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.64
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.54
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.47
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.38
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.36
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.34
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.27
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.26
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.21
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.21
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.2
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.13
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.1
PLN02712	667	arogenate dehydrogenase	99.08
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.02
PLN02256	304	arogenate dehydrogenase	99.0
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.98
PLN02858	1378	fructose-bisphosphate aldolase	98.94
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.94
PLN02858	1378	fructose-bisphosphate aldolase	98.92
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.91
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.91
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.87
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.86
PRK08655	437	prephenate dehydrogenase; Provisional	98.86
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.85
PRK07417	279	arogenate dehydrogenase; Reviewed	98.82
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.82
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.81
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.81
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.8
PRK08818	370	prephenate dehydrogenase; Provisional	98.79
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.77
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.77
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.76
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.75
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.75
PRK06545	359	prephenate dehydrogenase; Validated	98.75
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.73
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.73
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.72
PLN02712	667	arogenate dehydrogenase	98.72
PRK05225	487	ketol-acid reductoisomerase; Validated	98.7
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.68
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.68
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.67
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.66
PLN02688	266	pyrroline-5-carboxylate reductase	98.64
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.63
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.61
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.61
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.6
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.6
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.58
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.53
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.53
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.51
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.49
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.48
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.47
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.46
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.46
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.45
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.44
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.44
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.42
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.42
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.41
PRK08507	275	prephenate dehydrogenase; Validated	98.41
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.41
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.39
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.37
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.36
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.35
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.34
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.34
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.33
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.31
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.29
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.26
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.24
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.24
PRK07680	273	late competence protein ComER; Validated	98.2
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.19
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.17
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.16
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.16
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.15
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.09
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.08
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.08
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.06
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.06
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.05
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.05
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.05
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.02
PLN00203	519	glutamyl-tRNA reductase	98.02
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.99
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.98
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.97
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.97
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.96
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.95
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.93
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.92
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK06141	314	ornithine cyclodeaminase; Validated	97.92
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.91
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.89
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.86
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.83
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.82
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.82
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.8
PRK07340	304	ornithine cyclodeaminase; Validated	97.79
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.77
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.76
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.75
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.74
PRK08618	325	ornithine cyclodeaminase; Validated	97.68
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.67
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.64
PRK06046	326	alanine dehydrogenase; Validated	97.61
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.61
PRK14982	340	acyl-ACP reductase; Provisional	97.6
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.59
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.58
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.58
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.57
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.55
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.55
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.55
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.52
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.52
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.51
PRK06823	315	ornithine cyclodeaminase; Validated	97.5
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.5
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.48
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.46
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.44
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.43
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.43
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.41
PRK06407	301	ornithine cyclodeaminase; Provisional	97.4
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.4
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.39
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.39
PRK08291	330	ectoine utilization protein EutC; Validated	97.38
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.38
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.37
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.36
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.34
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.34
PRK07589	346	ornithine cyclodeaminase; Validated	97.34
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.32
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.32
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.24
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.22
PRK06199	379	ornithine cyclodeaminase; Validated	97.22
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.2
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.2
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.18
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.17
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.16
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.15
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.14
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.13
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.11
PTZ00117	319	malate dehydrogenase; Provisional	97.11
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.1
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.09
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.08
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.05
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.02
PLN02477	410	glutamate dehydrogenase	97.01
PRK09414	445	glutamate dehydrogenase; Provisional	96.99
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.99
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.99
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.94
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.85
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.79
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.77
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.75
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.73
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.72
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.72
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	96.69
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.68
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.66
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.66
PRK14031	444	glutamate dehydrogenase; Provisional	96.63
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.59
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.59
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.56
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.56
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.56
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.52
PRK02102	331	ornithine carbamoyltransferase; Validated	96.5
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.48
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.46
PRK14030	445	glutamate dehydrogenase; Provisional	96.44
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.41
PRK06223	307	malate dehydrogenase; Reviewed	96.39
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.36
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.32
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.29
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.26
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.26
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.23
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.21
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.17
PRK10637	457	cysG siroheme synthase; Provisional	96.17
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.1
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.09
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.06
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.05
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.02
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.01
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.98
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	95.98
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.96
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.96
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.95
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.93
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.92
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.92
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.9
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.86
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.85
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.83
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.83
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.76
PRK11579	346	putative oxidoreductase; Provisional	95.73
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.72
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.72
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.71
COG5322	351	Predicted dehydrogenase [General function predicti	95.71
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.69
PRK06444	197	prephenate dehydrogenase; Provisional	95.68
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.64
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.57
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.56
PRK00779	304	ornithine carbamoyltransferase; Provisional	95.53
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.52
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.52
PRK12862	763	malic enzyme; Reviewed	95.51
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.49
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.42
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.4
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.39
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.39
PRK09496	453	trkA potassium transporter peripheral membrane com	95.35
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.34
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.34
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.31
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.24
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.24
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.22
PLN02527	306	aspartate carbamoyltransferase	95.19
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.18
PRK06270	341	homoserine dehydrogenase; Provisional	95.13
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	95.12
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.06
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.01
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.98
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.96
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	94.88
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.88
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.85
COG0281	432	SfcA Malic enzyme [Energy production and conversio	94.84
PRK12861	764	malic enzyme; Reviewed	94.83
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.8
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	94.79
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.79
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.78
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.76
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.75
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.72
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.71
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.69
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.64
PLN02342	348	ornithine carbamoyltransferase	94.63
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.62
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.6
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.58
PRK09496	453	trkA potassium transporter peripheral membrane com	94.57
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.57
PRK06153	393	hypothetical protein; Provisional	94.5
PRK07806	248	short chain dehydrogenase; Provisional	94.41
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.39
PRK04284	332	ornithine carbamoyltransferase; Provisional	94.39
PRK10669	558	putative cation:proton antiport protein; Provision	94.38
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.38
PLN02602	350	lactate dehydrogenase	94.32
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	94.3
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	94.28
PRK14804	311	ornithine carbamoyltransferase; Provisional	94.28
PRK08192	338	aspartate carbamoyltransferase; Provisional	94.27
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.26
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.25
PRK05086	312	malate dehydrogenase; Provisional	94.22
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.21
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.2
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.18
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.15
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.13
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.12
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.09
COG2344	211	AT-rich DNA-binding protein [General function pred	93.96
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.85
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.82
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.78
PTZ00325	321	malate dehydrogenase; Provisional	93.77
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.75
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.72
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.67
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.66
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	93.65
PRK06349	426	homoserine dehydrogenase; Provisional	93.61
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.6
PRK08223	287	hypothetical protein; Validated	93.59
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	93.53
PRK10206	344	putative oxidoreductase; Provisional	93.53
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	93.31
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	93.29
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.21
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	93.2
PRK07411	390	hypothetical protein; Validated	93.2
PRK06701	290	short chain dehydrogenase; Provisional	93.11
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.09
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.09
PRK06392	326	homoserine dehydrogenase; Provisional	93.07
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	92.96
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.96
PRK12937	245	short chain dehydrogenase; Provisional	92.91
PRK04148	134	hypothetical protein; Provisional	92.89
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	92.89
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	92.78
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.72
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.66
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	92.58
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.51
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	92.41
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	92.37
PRK06128	300	oxidoreductase; Provisional	92.37
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	92.13
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	92.12
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.11
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	92.06
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	92.02
PLN00106	323	malate dehydrogenase	91.94
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.93
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	91.89
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	91.89
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	91.87
PRK07877	722	hypothetical protein; Provisional	91.86
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	91.76
PRK15076	431	alpha-galactosidase; Provisional	91.74
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	91.6
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	91.6
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	91.58
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	91.58
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.57
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	91.51
PLN02214	342	cinnamoyl-CoA reductase	91.44
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	91.41
PRK07523	255	gluconate 5-dehydrogenase; Provisional	91.32
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	91.25
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	91.19
PRK12742	237	oxidoreductase; Provisional	91.18
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	91.15
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	91.1
PRK07904	253	short chain dehydrogenase; Provisional	90.99
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	90.99
PRK02261	137	methylaspartate mutase subunit S; Provisional	90.93
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.92
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.83
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	90.6
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.58
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	90.56
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	90.54
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	90.52
PRK06114	254	short chain dehydrogenase; Provisional	90.43
PRK08324	681	short chain dehydrogenase; Validated	90.42
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	90.36
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.3
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.27
CHL00194	317	ycf39 Ycf39; Provisional	90.27
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	90.16
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.1
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	90.09
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	89.95
PRK05866	293	short chain dehydrogenase; Provisional	89.94
PRK06841	255	short chain dehydrogenase; Provisional	89.92
PRK06172	253	short chain dehydrogenase; Provisional	89.79
PLN03209	576	translocon at the inner envelope of chloroplast su	89.76
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.66
PRK08328	231	hypothetical protein; Provisional	89.61
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	89.57
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	89.57
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.55
PLN02740	381	Alcohol dehydrogenase-like	89.54
PRK08374	336	homoserine dehydrogenase; Provisional	89.51
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.42
PRK10537	393	voltage-gated potassium channel; Provisional	89.41
PTZ00188	506	adrenodoxin reductase; Provisional	89.4
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	89.3
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	89.28
PLN00112	444	malate dehydrogenase (NADP); Provisional	89.28
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	89.24
PRK06196	315	oxidoreductase; Provisional	89.21
PLN02427	386	UDP-apiose/xylose synthase	89.16
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	89.13
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	89.07
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	89.02
PRK08265	261	short chain dehydrogenase; Provisional	88.99
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	88.98
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	88.96
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	88.95
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	88.85
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	88.84
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	88.78
PRK12747	252	short chain dehydrogenase; Provisional	88.7
PLN02383	344	aspartate semialdehyde dehydrogenase	88.64
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.61
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	88.49
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	88.45
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	88.4
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.39
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	88.26
PRK13529	563	malate dehydrogenase; Provisional	88.25
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	88.17
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	88.05
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	88.05
PLN03075	296	nicotianamine synthase; Provisional	88.02
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.02
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	87.93
PRK10083	339	putative oxidoreductase; Provisional	87.9
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	87.9
PRK08589	272	short chain dehydrogenase; Validated	87.88
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	87.72
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	87.67
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	87.48
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	87.42
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	87.41
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	87.31
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	87.17
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	87.15
PRK05442	326	malate dehydrogenase; Provisional	87.04
PRK05717	255	oxidoreductase; Validated	87.04
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	86.98
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	86.96

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=5.2e-78  Score=585.33  Aligned_cols=341  Identities=95%  Similarity=1.421  Sum_probs=292.4

Q ss_pred             CCCceeeEEeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHH
Q 019328            1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (342)
Q Consensus         1 ~~~~~~~~~~~~~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~   80 (342)
                      |+|||+|.+-+|+++++|+++.++++....+.|++.+++++.....+...+++++.+.+.+++|++++...+++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~   80 (386)
T PLN02306          1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS   80 (386)
T ss_pred             CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence            89999999999999999999999876434577776666776433223346788998887545999998877789999999


Q ss_pred             HhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019328           81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (342)
Q Consensus        81 ~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g  160 (342)
                      +++++++|+|+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+....|
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g  160 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG  160 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence            99987779999999999999999999999999999999999999999999999999999999999999998886544567


Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++|+||||||||+|+||+.+|++++++|||+|++|||+.+...+.+...++..++..+.....+....+|++++++||+|
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            89999999999999999999999634999999999998754322111112111111111111112235899999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPH  320 (342)
                      ++|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||
T Consensus       241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH  320 (386)
T PLN02306        241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH  320 (386)
T ss_pred             EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHhhhc
Q 019328          321 IASASKWTREGMATLAALNVL  341 (342)
Q Consensus       321 ia~~t~~~~~~~~~~~~~ni~  341 (342)
                      +||.|.++++++...+++||.
T Consensus       321 iag~T~e~~~~~~~~~~~ni~  341 (386)
T PLN02306        321 IASASKWTREGMATLAALNVL  341 (386)
T ss_pred             cccCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999984

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=8.6e-74  Score=544.05  Aligned_cols=302  Identities=37%  Similarity=0.511  Sum_probs=265.2

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        13 ~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~   92 (342)
                      +++++++.+.++.+..+ +.+.+. .+.++..  ....+++++.+.+. ++|++++ +.+++++++++.+++|  |+|++
T Consensus         1 ~~~~~vl~~~~~~~~~~-~~l~~~-~~~~~~~--~~~~~~~~l~~~~~-~~d~~~~-~~~~v~~~~l~~~~~L--k~I~~   72 (324)
T COG0111           1 KMMIKVLVTDPLAPDAL-EELLAA-YDVEVPD--GPDLDEEELLEALA-DADALIV-SVTPVTEEVLAAAPNL--KAIGR   72 (324)
T ss_pred             CCcceeeccCccCHHHH-HHHHhc-ccccccc--ccccchHHHHhhcc-cCcEEEE-ecCCCCHHHHhhCCCc--eEEEE
Confidence            35788999999887654 455444 3333221  22346677887777 4999988 7789999999999987  99999


Q ss_pred             cccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 019328           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG  172 (342)
                      .|+|+||||+++++++||.|+|+|+.|+.+||||++++||+++|+++.+++.+++|.|..   ..+.|.+|+||||||||
T Consensus        73 ~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG  149 (324)
T COG0111          73 AGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIG  149 (324)
T ss_pred             ccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999998863   33567899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~  252 (342)
                      +|+||+.+|+++ ++|||+|++|||+.......               ..+.....+|++++++||||++|+|+|++|+|
T Consensus       150 ~G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         150 LGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             CCHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence            999999999996 89999999999976542111               11223457899999999999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCCCCcHHHHHH
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      |||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+||.|.+++++
T Consensus       214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~  293 (324)
T COG0111         214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER  293 (324)
T ss_pred             ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999876 6999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +..++++|+.
T Consensus       294 ~~~~~~~~i~  303 (324)
T COG0111         294 VAEIVAENIV  303 (324)
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=7e-73  Score=537.40  Aligned_cols=303  Identities=41%  Similarity=0.571  Sum_probs=264.0

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      |++++.+.++++. ..+.+.+. ++++......... . ++.+... ++|++++....++++++++++|+|  |+|+..|
T Consensus         2 k~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~~-~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~~   74 (324)
T COG1052           2 KIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTPD-T-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATRS   74 (324)
T ss_pred             CcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCccc-h-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEec
Confidence            5567888888874 45666554 6665543321122 2 5566665 599999988889999999999987  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCC-CCCcccccccCCCEEEEEcc
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w-~~~~~~g~~l~gktvGIiG~  173 (342)
                      +||||||+++|+++||.|+|+|++++++||||+++|||++.|++.++++++|+|.|..| ......|.+++|||+||||+
T Consensus        75 ~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~  154 (324)
T COG1052          75 AGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL  154 (324)
T ss_pred             cccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999866 23345688999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019328          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~l  253 (342)
                      |+||+++|+++ ++|||+|+||||++.+..+.               ...+ .+.++++++++||+|++|||+|++|+||
T Consensus       155 GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~---------------~~~~-~y~~l~ell~~sDii~l~~Plt~~T~hL  217 (324)
T COG1052         155 GRIGQAVARRL-KGFGMKVLYYDRSPNPEAEK---------------ELGA-RYVDLDELLAESDIISLHCPLTPETRHL  217 (324)
T ss_pred             CHHHHHHHHHH-hcCCCEEEEECCCCChHHHh---------------hcCc-eeccHHHHHHhCCEEEEeCCCChHHhhh
Confidence            99999999997 79999999999997632221               0112 2346999999999999999999999999


Q ss_pred             cCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCc---eEEcCCCCCCcHHHH
Q 019328          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKWTR  329 (342)
Q Consensus       254 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~n---vi~TPHia~~t~~~~  329 (342)
                      ||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||.+ ++||++++|   |++|||+|++|.+++
T Consensus       218 in~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~  297 (324)
T COG1052         218 INAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEAR  297 (324)
T ss_pred             cCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHH
Confidence            9999999999999999999999999999999999999999999999999985 678888777   999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 019328          330 EGMATLAALNVL  341 (342)
Q Consensus       330 ~~~~~~~~~ni~  341 (342)
                      .+|+..+++|+.
T Consensus       298 ~~m~~~~~~nl~  309 (324)
T COG1052         298 KAMAELALENLE  309 (324)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999985

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.9e-72  Score=536.40  Aligned_cols=304  Identities=34%  Similarity=0.512  Sum_probs=263.7

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      +++||+++.++++ ...+.|++. +++.... .....+.+++.+.+. ++|+++++. .++++++++++|+|  |+|+++
T Consensus         1 ~~~~vl~~~~~~~-~~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~-~ad~li~~~-~~~~~~~l~~~p~L--k~I~~~   73 (323)
T PRK15409          1 MKPSVILYKALPD-DLLQRLEEH-FTVTQVA-NLSPETVEQHAAAFA-EAEGLLGSG-EKVDAALLEKMPKL--RAASTI   73 (323)
T ss_pred             CCceEEEeCCCCH-HHHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhc-CCeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence            3578999998875 345677653 4554332 112346678888887 599998764 47999999999997  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~  173 (342)
                      |+|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|..+......|.+|+|||+||||+
T Consensus        74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~  153 (323)
T PRK15409         74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM  153 (323)
T ss_pred             ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999864422223578999999999999


Q ss_pred             ChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328          174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       174 G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~  252 (342)
                      |+||+.+|+++ + +|||+|++|||+.......               ..+. ...++++++++||+|++|+|+|++|+|
T Consensus       154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---------------~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~  216 (323)
T PRK15409        154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE---------------RFNA-RYCDLDTLLQESDFVCIILPLTDETHH  216 (323)
T ss_pred             cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---------------hcCc-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence            99999999996 7 9999999999985432110               0111 245999999999999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      +||++.|++||||++|||+|||++||++||++||++|+|+|||||||++||++ ++|||++|||++|||+||.|.+++++
T Consensus       217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~  296 (323)
T PRK15409        217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN  296 (323)
T ss_pred             ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999986 57999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +...+++||.
T Consensus       297 ~~~~~~~ni~  306 (323)
T PRK15409        297 MAACAVDNLI  306 (323)
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-70  Score=521.23  Aligned_cols=294  Identities=29%  Similarity=0.430  Sum_probs=252.6

Q ss_pred             EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        17 kvl~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      ||++..+  +++ ...+.|++.+ ++....    ..+++++.+.+. ++|++++. ..++++++++++|+|  |+|++.|
T Consensus         2 ki~~~~~~~~~~-~~~~~l~~~~-~~~~~~----~~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~   71 (311)
T PRK08410          2 KIVILDAKTLGD-KDLSVFEEFG-DFQIYP----TTSPEEVIERIK-DANIIITN-KVVIDKEVLSQLPNL--KLICITA   71 (311)
T ss_pred             eEEEEecCCCCh-hhHHHHhhCc-eEEEeC----CCCHHHHHHHhC-CCCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence            4555444  343 2346676543 554322    125678888877 49998876 568999999999987  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCc---ccccccCCCEEEEE
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI  171 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~---~~g~~l~gktvGIi  171 (342)
                      +|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|..+....   ..+++|+|||||||
T Consensus        72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi  151 (311)
T PRK08410         72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII  151 (311)
T ss_pred             cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999986432111   12479999999999


Q ss_pred             ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019328          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~  251 (342)
                      |+|+||+.+|+++ ++|||+|++|||+.....                  .++ ...++++++++||+|++|+|+|++|+
T Consensus       152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T~  211 (311)
T PRK08410        152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKTK  211 (311)
T ss_pred             CCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence            9999999999997 899999999999753210                  011 24689999999999999999999999


Q ss_pred             cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccCC---CceEEcCCCCCCcHH
Q 019328          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM---KNAIVVPHIASASKW  327 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~---~nvi~TPHia~~t~~  327 (342)
                      |+||++.|++||||++|||+|||++||++||++||++|+|+ ||||||++||++. +|||++   |||++|||+||.|.+
T Consensus       212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e  290 (311)
T PRK08410        212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE  290 (311)
T ss_pred             cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence            99999999999999999999999999999999999999999 9999999999864 799987   899999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 019328          328 TREGMATLAALNVL  341 (342)
Q Consensus       328 ~~~~~~~~~~~ni~  341 (342)
                      +++++...+++|+.
T Consensus       291 ~~~~~~~~~~~nl~  304 (311)
T PRK08410        291 ARKTLIEKVKENIK  304 (311)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999984

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-70  Score=537.40  Aligned_cols=304  Identities=28%  Similarity=0.384  Sum_probs=269.2

Q ss_pred             EeCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCC
Q 019328            9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG   87 (342)
Q Consensus         9 ~~~~~~~~kvl~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~   87 (342)
                      ++.|++|+||+++.++++. ..+.|++.++ ++....   ...+++++.+.+. ++|+++++..+++++++++++|+|  
T Consensus         4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L--   76 (409)
T PRK11790          4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIK-DAHFIGIRSRTQLTEEVLAAAEKL--   76 (409)
T ss_pred             CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcC-CCCEEEEeCCCCCCHHHHhhCCCC--
Confidence            6789999999999877653 4567776666 665432   2346788887777 599998877778999999999987  


Q ss_pred             ceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 019328           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (342)
Q Consensus        88 k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gkt  167 (342)
                      |+|+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+   ...|++|.|||
T Consensus        77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~L~gkt  153 (409)
T PRK11790         77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS---AAGSFEVRGKT  153 (409)
T ss_pred             eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc---ccCcccCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999988643   23568999999


Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt  247 (342)
                      |||||+|+||+.+|+++ ++|||+|++|||+.....                .  ......++++++++||+|++|+|+|
T Consensus       154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~----------------~--~~~~~~~l~ell~~sDiVslh~Plt  214 (409)
T PRK11790        154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL----------------G--NARQVGSLEELLAQSDVVSLHVPET  214 (409)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEECCCccccc----------------C--CceecCCHHHHHhhCCEEEEcCCCC
Confidence            99999999999999997 799999999998643210                0  1123458999999999999999999


Q ss_pred             cccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-----CCccCCCceEEcCCCC
Q 019328          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIA  322 (342)
Q Consensus       248 ~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvi~TPHia  322 (342)
                      ++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.     +|||++|||++|||+|
T Consensus       215 ~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia  294 (409)
T PRK11790        215 PSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG  294 (409)
T ss_pred             hHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence            99999999999999999999999999999999999999999999999999999999864     5899999999999999


Q ss_pred             CCcHHHHHHHHHHHHhhhc
Q 019328          323 SASKWTREGMATLAALNVL  341 (342)
Q Consensus       323 ~~t~~~~~~~~~~~~~ni~  341 (342)
                      |+|.++++++...+++|+.
T Consensus       295 ~~t~ea~~~~~~~~~~nl~  313 (409)
T PRK11790        295 GSTQEAQENIGLEVAGKLV  313 (409)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999974

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=9.6e-70  Score=517.40  Aligned_cols=282  Identities=29%  Similarity=0.354  Sum_probs=248.2

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCC
Q 019328           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG  109 (342)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~g  109 (342)
                      .+.+++...++....    ..+++++.+.+. ++|++++. ..++++++++++|+|  |+|+++|+|+|+||+++|+++|
T Consensus        18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g   89 (317)
T PRK06487         18 LSPLEQAFDELQLHD----ATTPEQVAERLR-GAQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG   89 (317)
T ss_pred             hhHHHhhCCeEEEec----CCCHHHHHHHhC-CCeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence            345654444554322    235678888887 59988875 457999999999987  9999999999999999999999


Q ss_pred             ceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       110 I~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      |.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|...   ...+++|+||||||||+|+||+.+|+++ +
T Consensus        90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~  168 (317)
T PRK06487         90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E  168 (317)
T ss_pred             CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence            99999999999999999999999999999999999999999755321   1235799999999999999999999997 8


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCc
Q 019328          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (342)
Q Consensus       187 a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~ga  266 (342)
                      +|||+|++|||+....                     .....+|++++++||+|++|+|+|++|+|+||++.|++||+|+
T Consensus       169 ~fgm~V~~~~~~~~~~---------------------~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga  227 (317)
T PRK06487        169 AFGMRVLIGQLPGRPA---------------------RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA  227 (317)
T ss_pred             hCCCEEEEECCCCCcc---------------------cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence            9999999999864320                     0113589999999999999999999999999999999999999


Q ss_pred             EEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccC--CCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       267 ilIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~--~~nvi~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      +|||+|||++||++||++||++|+|+||+||||++||++. +|||+  +|||++|||+||.|.++++++...+++||.
T Consensus       228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~  305 (317)
T PRK06487        228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENAR  305 (317)
T ss_pred             EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875 79995  899999999999999999999999999984

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.5e-69  Score=519.35  Aligned_cols=304  Identities=44%  Similarity=0.684  Sum_probs=264.7

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      ++||+++.++++ ...+.|++. +++.... .....+.+++.+.+. ++|++++....++++++++++|+|  |+|+++|
T Consensus         2 ~~kil~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~~   75 (333)
T PRK13243          2 KPKVFITREIPE-NGIEMLEEH-FEVEVWE-DEREIPREVLLEKVR-DVDALVTMLSERIDCEVFEAAPRL--RIVANYA   75 (333)
T ss_pred             CceEEEECCCCH-HHHHHHhcC-ceEEEec-CCCCCCHHHHHHHhC-CCcEEEEeCCCCCCHHHHhhCCCC--eEEEecC
Confidence            578898887764 345666654 4554332 222346788888887 599999876668999999999987  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC----CCCCcccccccCCCEEEE
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~----w~~~~~~g~~l~gktvGI  170 (342)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..    |.+....|++|+||||||
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI  155 (333)
T PRK13243         76 VGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI  155 (333)
T ss_pred             ccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999864    222223578999999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      ||+|+||+.+|+++ ++|||+|++|||+.......   .            .+. ...++++++++||+|++|+|+|++|
T Consensus       156 iG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~~~-~~~~l~ell~~aDiV~l~lP~t~~T  218 (333)
T PRK13243        156 IGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK---E------------LGA-EYRPLEELLRESDFVSLHVPLTKET  218 (333)
T ss_pred             ECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH---H------------cCC-EecCHHHHHhhCCEEEEeCCCChHH
Confidence            99999999999997 79999999999986542110   0            011 2358999999999999999999999


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHH
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE  330 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~  330 (342)
                      +++|+++.|++||+|++|||+|||+++|++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.++++
T Consensus       219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~  298 (333)
T PRK13243        219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEARE  298 (333)
T ss_pred             hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 019328          331 GMATLAALNVL  341 (342)
Q Consensus       331 ~~~~~~~~ni~  341 (342)
                      ++...+++||.
T Consensus       299 ~~~~~~~~ni~  309 (333)
T PRK13243        299 GMAELVAENLI  309 (333)
T ss_pred             HHHHHHHHHHH
Confidence            99999999984

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-69  Score=512.81  Aligned_cols=267  Identities=30%  Similarity=0.396  Sum_probs=240.4

Q ss_pred             CCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHH
Q 019328           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (342)
Q Consensus        50 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~  129 (342)
                      .+++++.+.+. ++|++++. ..++++++++++|+|  |+|++.|+|+|+||+++|+++||.|+|+||+++++||||+++
T Consensus        33 ~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~  108 (314)
T PRK06932         33 TSAEQTIERAK-DADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG  108 (314)
T ss_pred             CChHHHHHHhC-CCcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence            35788888887 49988774 557999999999987  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHcCCCCCCCC---CcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 019328          130 LSLAAARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (342)
Q Consensus       130 l~L~~~R~~~~~~~~~~~g~w~~w~~---~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~  206 (342)
                      +||+++|++..+++.+++|.|..+..   ....+++|+||||||||+|.||+.+|+++ ++|||+|++||++....    
T Consensus       109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~----  183 (314)
T PRK06932        109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASV----  183 (314)
T ss_pred             HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCcccc----
Confidence            99999999999999999999864321   11235799999999999999999999997 89999999999864210    


Q ss_pred             HhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL  286 (342)
                                     . .....+|++++++||+|++|+|+|++|+|+||++.|++||||++|||+|||++||++||++||
T Consensus       184 ---------------~-~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL  247 (314)
T PRK06932        184 ---------------C-REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL  247 (314)
T ss_pred             ---------------c-ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence                           0 011358999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCccEEEeecCCCCCCC-CCCcc----CCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          287 KQNPMFRVGLDVFEDEPYM-KPGLS----EMKNAIVVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       287 ~~g~i~gaalDV~~~EP~~-~~~L~----~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      ++|+|+||+||||++||++ ++|||    ++|||++|||+||+|.++++++...+++||.
T Consensus       248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~  307 (314)
T PRK06932        248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIE  307 (314)
T ss_pred             HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999986 47898    5999999999999999999999999999984

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=6.4e-70  Score=501.37  Aligned_cols=301  Identities=33%  Similarity=0.482  Sum_probs=270.7

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      .+.+||+++++.+. .++.|++.+.++++..    ..+.||+...+. ++|++++++.+++++++|+...+ ++|+|++.
T Consensus         5 ~~~~il~~e~~~~~-~~~~l~~~g~~v~~~~----~~~~eel~~~i~-~~~aviVrs~tkvtadvl~aa~~-~lkvVgra   77 (406)
T KOG0068|consen    5 DMRKILVAESLDQA-CIEILKDNGYQVEFKK----NLSLEELIEKIK-DCDALIVRSKTKVTADVLEAAAG-GLKVVGRA   77 (406)
T ss_pred             CcceEEEecccchH-HHHHHHhcCceEEEec----cCCHHHHHHHhc-cCCEEEEEeCCeecHHHHHhhcC-CeEEEEec
Confidence            34489999999874 5789999998887532    357789999998 49999999999999999996433 46999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~  173 (342)
                      |+|+||||+++|+++||.|.|+|.+|+.++||++++++++++|++.+....+|+|+|+.   ..+.|.+|+|||+||+|+
T Consensus        78 g~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~  154 (406)
T KOG0068|consen   78 GIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGL  154 (406)
T ss_pred             ccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeec
Confidence            99999999999999999999999999999999999999999999999999999998753   557899999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019328          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~l  253 (342)
                      |+||+++|+++ +++||+|++|||.......+   .+            + ....+++|+++.||||++|||+||+|++|
T Consensus       155 GrIGseVA~r~-k~~gm~vI~~dpi~~~~~~~---a~------------g-vq~vsl~Eil~~ADFitlH~PLtP~T~~l  217 (406)
T KOG0068|consen  155 GRIGSEVAVRA-KAMGMHVIGYDPITPMALAE---AF------------G-VQLVSLEEILPKADFITLHVPLTPSTEKL  217 (406)
T ss_pred             ccchHHHHHHH-HhcCceEEeecCCCchHHHH---hc------------c-ceeeeHHHHHhhcCEEEEccCCCcchhhc
Confidence            99999999996 89999999999987542211   11            1 12479999999999999999999999999


Q ss_pred             cCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC---CCCccCCCceEEcCCCCCCcHHHHH
Q 019328          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTRE  330 (342)
Q Consensus       254 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvi~TPHia~~t~~~~~  330 (342)
                      +|.+.|++||+|..+||+|||++||+.||++||++|+++|||+|||+.||+.   .+.|.++|||++|||+|+.|.|++.
T Consensus       218 in~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~  297 (406)
T KOG0068|consen  218 LNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQS  297 (406)
T ss_pred             cCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999986   4689999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 019328          331 GMATLAALNVL  341 (342)
Q Consensus       331 ~~~~~~~~ni~  341 (342)
                      +.+..+++++.
T Consensus       298 ~iaievaea~~  308 (406)
T KOG0068|consen  298 RIAIEVAEAVS  308 (406)
T ss_pred             HHHHHHHHHHH
Confidence            99999998863

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-66  Score=504.87  Aligned_cols=292  Identities=22%  Similarity=0.238  Sum_probs=255.7

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CcCccHHHHHHhhccCCceEEEcccccCccChhHHH
Q 019328           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~  106 (342)
                      ..+.|++.++++.+...  ...+.+++.+.+. ++|++|+..  +.++++++++++|+|  |+|++.|+|+||||+++|+
T Consensus        67 ~~~~l~~~g~~~v~~~~--~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~  141 (386)
T PLN03139         67 IRDWLESQGHQYIVTDD--KEGPDCELEKHIP-DLHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAA  141 (386)
T ss_pred             HHHHHHhcCCeEEEeCC--CCCCHHHHHHHhC-CCeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHH
Confidence            45677788888765432  2346778888887 499998864  347999999999998  9999999999999999999


Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      ++||.|+|+||+|+.+||||++++||++.|++..+++.+++|.|... .....+++|.||||||||+|+||+.+|++| +
T Consensus       142 ~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~  219 (386)
T PLN03139        142 AAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-K  219 (386)
T ss_pred             HCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-H
Confidence            99999999999999999999999999999999999999999988521 112346899999999999999999999997 7


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCc
Q 019328          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (342)
Q Consensus       187 a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~ga  266 (342)
                      +|||+|++||++..+....  .            ..+.....++++++++||+|++|+|+|++|+++||++.|++||+|+
T Consensus       220 afG~~V~~~d~~~~~~~~~--~------------~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga  285 (386)
T PLN03139        220 PFNCNLLYHDRLKMDPELE--K------------ETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGV  285 (386)
T ss_pred             HCCCEEEEECCCCcchhhH--h------------hcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCe
Confidence            9999999999985321110  0            0112234589999999999999999999999999999999999999


Q ss_pred             EEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       267 ilIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      +|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||.|.++++++...+++||.
T Consensus       286 ~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~  361 (386)
T PLN03139        286 LIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLD  361 (386)
T ss_pred             EEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999986 479999999999999999999999999999999984

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=1e-66  Score=505.21  Aligned_cols=291  Identities=24%  Similarity=0.268  Sum_probs=255.3

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CcCccHHHHHHhhccCCceEEEcccccCccChhHHHh
Q 019328           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (342)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~  107 (342)
                      .+.|++.++++.+..  +...+.+++.+.+. ++|++|+..  ..++++++++++|+|  |+|+++|+|+||||+++|++
T Consensus        61 ~~~l~~~g~e~~~~~--~~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~  135 (385)
T PRK07574         61 RKFLEERGHELVVTS--DKDGPDSDFEKELP-DADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASE  135 (385)
T ss_pred             HHHHHhcCcEEEEeC--CCCCCHHHHHHHcC-CCeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHH
Confidence            356778888876532  22346788888887 499998863  357999999999997  99999999999999999999


Q ss_pred             CCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhc
Q 019328          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (342)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a  187 (342)
                      +||.|+|+|++|+.+||||++++||+++|++..+++.+++|.|..+.. ...+++|+||||||||+|+||+.+|++| ++
T Consensus       136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~  213 (385)
T PRK07574        136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRL-KP  213 (385)
T ss_pred             CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHH-Hh
Confidence            999999999999999999999999999999999999999999864321 1246799999999999999999999997 79


Q ss_pred             CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcE
Q 019328          188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI  267 (342)
Q Consensus       188 ~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gai  267 (342)
                      |||+|++|||+..+....  .            ..+.....++++++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus       214 fG~~V~~~dr~~~~~~~~--~------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  279 (385)
T PRK07574        214 FDVKLHYTDRHRLPEEVE--Q------------ELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY  279 (385)
T ss_pred             CCCEEEEECCCCCchhhH--h------------hcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence            999999999986321110  0            01122346899999999999999999999999999999999999999


Q ss_pred             EEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       268 lIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      |||+|||+++|++||++||++|+|+|||||||++||++ ++|||++|||++|||+||.|.++++++...+++||.
T Consensus       280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~  354 (385)
T PRK07574        280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILE  354 (385)
T ss_pred             EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999986 479999999999999999999999999999999984

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=2.5e-66  Score=499.09  Aligned_cols=312  Identities=25%  Similarity=0.312  Sum_probs=258.2

Q ss_pred             eCCCCCeEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccC
Q 019328           10 WNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAG   86 (342)
Q Consensus        10 ~~~~~~~kvl~~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~   86 (342)
                      ++-++++|||++.+..+.  .| .+.+++.++ .. +.    ..+.+++.+.+. ++|++++. ..++++++++.+|+| 
T Consensus        13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~-~~----~~~~~e~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L-   83 (347)
T PLN02928         13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPF-IQ-VD----AVAREDVPDVIA-NYDICVPK-MMRLDADIIARASQM-   83 (347)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHhhcCCe-eE-ec----CCCHHHHHHHhc-CCcEEEEC-CCCCCHHHHhcCCCc-
Confidence            456678899998876653  22 344443332 22 22    235677887776 59998876 457999999999987 


Q ss_pred             CceEEEcccccCccChhHHHhCCceEEcCCCC---CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccccc
Q 019328           87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL  163 (342)
Q Consensus        87 ~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~---~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l  163 (342)
                       |+|++.|+|+|+||+++|.++||.|+|+|++   ++.+||||++++||+++|++..+++.+++|.|..     ..+++|
T Consensus        84 -k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l  157 (347)
T PLN02928         84 -KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDTL  157 (347)
T ss_pred             -eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccCC
Confidence             9999999999999999999999999999986   7899999999999999999999999999998742     246799


Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh-hhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      +|||+||||+|.||+.+|+++ ++|||+|++|||+......... .+. ...  ....... ....++++++++||+|++
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~-~~~~~~~--~~~~~~~-~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGL-LIPNGDV--DDLVDEK-GGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhh-ccccccc--ccccccc-CcccCHHHHHhhCCEEEE
Confidence            999999999999999999997 7999999999997532111000 000 000  0000000 134689999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHI  321 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHi  321 (342)
                      |+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+
T Consensus       233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHi  312 (347)
T PLN02928        233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHV  312 (347)
T ss_pred             CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcC
Confidence            999999999999999999999999999999999999999999999999999999999999976 5799999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhhhc
Q 019328          322 ASASKWTREGMATLAALNVL  341 (342)
Q Consensus       322 a~~t~~~~~~~~~~~~~ni~  341 (342)
                      ||+|.++++++...+++|+.
T Consensus       313 a~~t~~~~~~~~~~~~~nl~  332 (347)
T PLN02928        313 AGVTEYSYRSMGKIVGDAAL  332 (347)
T ss_pred             CCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999984

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=4.4e-66  Score=522.24  Aligned_cols=298  Identities=36%  Similarity=0.529  Sum_probs=263.0

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccc
Q 019328           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (342)
Q Consensus        17 kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G   96 (342)
                      ||+++.++.+. ..+.|++.++++...  .  ..+++++.+.+. ++|++++++.+++++++++++|+|  |+|++.|+|
T Consensus         1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G   72 (525)
T TIGR01327         1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIP-DYDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG   72 (525)
T ss_pred             CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhc-CCCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence            47788877653 456777666666532  1  236788888887 599999887778999999999987  999999999


Q ss_pred             cCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChH
Q 019328           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (342)
Q Consensus        97 ~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~I  176 (342)
                      +||||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|..+   .+.|.+|+||||||||+|+|
T Consensus        73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~I  149 (525)
T TIGR01327        73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRI  149 (525)
T ss_pred             cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHH
Confidence            999999999999999999999999999999999999999999999999999988532   24578999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019328          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (342)
Q Consensus       177 G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~  256 (342)
                      |+.+|++| ++|||+|++|||+.......               ..+.....++++++++||+|++|+|+|++|+++||+
T Consensus       150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~  213 (525)
T TIGR01327       150 GSIVAKRA-KAFGMKVLAYDPYISPERAE---------------QLGVELVDDLDELLARADFITVHTPLTPETRGLIGA  213 (525)
T ss_pred             HHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence            99999997 79999999999974321110               011222358999999999999999999999999999


Q ss_pred             hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHHHHHH
Q 019328          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLA  336 (342)
Q Consensus       257 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~  336 (342)
                      +.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||+|+.|.+++++++..+
T Consensus       214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~  293 (525)
T TIGR01327       214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQV  293 (525)
T ss_pred             HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             Hhhhc
Q 019328          337 ALNVL  341 (342)
Q Consensus       337 ~~ni~  341 (342)
                      ++|+.
T Consensus       294 ~~ni~  298 (525)
T TIGR01327       294 AEQVL  298 (525)
T ss_pred             HHHHH
Confidence            99974

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-65  Score=515.90  Aligned_cols=298  Identities=35%  Similarity=0.516  Sum_probs=262.1

Q ss_pred             eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        16 ~kvl~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      |||+++.++++. ..+.|++. ++++..  ..  ..+++++.+.+. ++|++++++.+++++++++++|+|  |+|++.|
T Consensus         1 m~ili~~~~~~~-~~~~l~~~~~~~v~~--~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (526)
T PRK13581          1 MKVLVSDPISPA-GLEILKDAPGVEVDV--KT--GLDKEELLEIIG-DYDALIVRSATKVTAEVLEAAKNL--KVIGRAG   72 (526)
T ss_pred             CeEEEeCCCCHH-HHHHHhccCCeEEEe--CC--CCCHHHHHHHhc-CCCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            478888877653 35667664 455442  11  236788888887 499999887778999999999987  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G  174 (342)
                      +|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|..+   .+.|++|+||||||||+|
T Consensus        73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G  149 (526)
T PRK13581         73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG  149 (526)
T ss_pred             cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999988642   245789999999999999


Q ss_pred             hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019328          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       175 ~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li  254 (342)
                      +||+.+|+++ ++|||+|++|||+.......               ..+... .++++++++||+|++|+|+|++|+++|
T Consensus       150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li  212 (526)
T PRK13581        150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA---------------QLGVEL-VSLDELLARADFITLHTPLTPETRGLI  212 (526)
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCc
Confidence            9999999997 79999999999975432110               011222 389999999999999999999999999


Q ss_pred             CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHHHH
Q 019328          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (342)
Q Consensus       255 ~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~~~  334 (342)
                      +++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||+|+.|.+++++++.
T Consensus       213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  292 (526)
T PRK13581        213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAI  292 (526)
T ss_pred             CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHhhhc
Q 019328          335 LAALNVL  341 (342)
Q Consensus       335 ~~~~ni~  341 (342)
                      .+++|+.
T Consensus       293 ~~~~ni~  299 (526)
T PRK13581        293 QVAEQVI  299 (526)
T ss_pred             HHHHHHH
Confidence            9999984

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=9.5e-65  Score=485.09  Aligned_cols=301  Identities=28%  Similarity=0.435  Sum_probs=256.4

Q ss_pred             CeEEEEeCCCCc-hH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328           15 KYRVVSTKPMPG-TR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        15 ~~kvl~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~   92 (342)
                      ||||++...-+. .. ..+.+++.++++...   +...+++. .+.+. ++|++++...+++++++++++|+.++|+|++
T Consensus         1 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~   75 (330)
T PRK12480          1 MTKIMFFGTRDYEKEMALNWGKKNNVEVTTS---KELLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQ   75 (330)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHHhcCeEEEEc---CCCCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEe
Confidence            377776544333 22 334556666555432   22455554 66666 5999998766789999999998444599999


Q ss_pred             cccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 019328           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG  172 (342)
                      .|+|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+++|.|. |... ..|++|+|+||||||
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG  153 (330)
T PRK12480         76 RTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIG  153 (330)
T ss_pred             cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999884 6432 357899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~  252 (342)
                      +|.||+.+|++| ++|||+|++||+++..... +                 .....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~  214 (330)
T PRK12480        154 TGRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYH  214 (330)
T ss_pred             CCHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence            999999999997 7999999999998754211 0                 01235899999999999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC----------C----CCccCCCceEEc
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVV  318 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvi~T  318 (342)
                      +++++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||+.          +    +|||++|||++|
T Consensus       215 li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilT  294 (330)
T PRK12480        215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVT  294 (330)
T ss_pred             HHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEEC
Confidence            99999999999999999999999999999999999999999999999999962          1    269999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhhc
Q 019328          319 PHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       319 PHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      ||+|++|.++++++.+.+++|+.
T Consensus       295 PHia~~t~~~~~~~~~~~~~n~~  317 (330)
T PRK12480        295 PHIAFFSDEAVQNLVEGGLNAAL  317 (330)
T ss_pred             CcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=6e-64  Score=480.63  Aligned_cols=304  Identities=24%  Similarity=0.403  Sum_probs=258.4

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEE
Q 019328           13 NGKYRVVSTKPMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        13 ~~~~kvl~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~   91 (342)
                      |++++++++++.+.. +.+.+.+ .+.++....   ...++ |..+.+. ++|+++++..+++++++++++|++++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~-e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~   74 (332)
T PRK08605          1 MTKIKIMSVRDEDAP-YIKAWAEKHHVEVDLTK---EALTD-DNVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIA   74 (332)
T ss_pred             CcEEEEEecCHHHHH-HHHHHHHhcCeEEEEec---CCCCH-HHHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEE
Confidence            356778888876543 4555544 333332211   12344 4456665 599999887788999999999986679999


Q ss_pred             EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 019328           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIi  171 (342)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.| .|.+. ..|++|+|+|||||
T Consensus        75 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~-~~~~~-~~~~~l~g~~VgII  152 (332)
T PRK08605         75 QRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDF-RWEPP-ILSRSIKDLKVAVI  152 (332)
T ss_pred             EcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCc-ccccc-cccceeCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999998 47542 35789999999999


Q ss_pred             ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019328          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~  251 (342)
                      |+|.||+.+|++|+++|||+|++||++.......                 ......++++++++||+|++|+|++++|+
T Consensus       153 G~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~-----------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~  215 (332)
T PRK08605        153 GTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT-----------------YVDYKDTIEEAVEGADIVTLHMPATKYNH  215 (332)
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh-----------------hccccCCHHHHHHhCCEEEEeCCCCcchh
Confidence            9999999999997458999999999986542111                 01123589999999999999999999999


Q ss_pred             cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CC-C-----------CccCCCceEE
Q 019328          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK-P-----------GLSEMKNAIV  317 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~-~-----------~L~~~~nvi~  317 (342)
                      ++++++.++.||+|++|||+|||.++|+++|+++|++|+|+||+||||++||+  +. +           +||++|||++
T Consensus       216 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvil  295 (332)
T PRK08605        216 YLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVIL  295 (332)
T ss_pred             hhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEE
Confidence            99999999999999999999999999999999999999999999999999983  22 2           4999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          318 VPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      |||+|++|.++++++...+++|+.
T Consensus       296 TPHia~~t~e~~~~~~~~~~~n~~  319 (332)
T PRK08605        296 TPHIAFYTDAAVKNLIVDALDATL  319 (332)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999974

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=9.4e-64  Score=470.31  Aligned_cols=273  Identities=41%  Similarity=0.592  Sum_probs=243.2

Q ss_pred             CCHHHHHHHhcCCccEEEecCCcCccHHHHHHh-hccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHH
Q 019328           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA  128 (342)
Q Consensus        50 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al  128 (342)
                      .+.++....+.+...++.+.....++.+.+.++ |++  |+|+.+|+|+||||+++|++|||+|+|+|+.++++|||+++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~  126 (336)
T KOG0069|consen   49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAV  126 (336)
T ss_pred             cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHH
Confidence            344455555554345555555667788888887 777  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh
Q 019328          129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT  208 (342)
Q Consensus       129 ~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~  208 (342)
                      +++|.+.|++..+++++++|.| .|......|..+.||||||+|+|+||+.+|+|| ++||+.+.|++|+.....+..  
T Consensus       127 ~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y~~r~~~~~~~~~--  202 (336)
T KOG0069|consen  127 SLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILYHSRTQLPPEEAY--  202 (336)
T ss_pred             HHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeeeecccCCchhhHH--
Confidence            9999999999999999999999 787777788999999999999999999999998 799999999998765422211  


Q ss_pred             hhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      ++.             ....++++++.+||+|++|||+|++|+|+||+++|.+||+|++|||++||.++|++++++||++
T Consensus       203 ~~~-------------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s  269 (336)
T KOG0069|consen  203 EYY-------------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS  269 (336)
T ss_pred             Hhc-------------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence            110             1146999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       289 g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      |+|+||+||||++||.+++||++++||++|||+|+.|.+++++|+..++.|+.
T Consensus       270 G~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~  322 (336)
T KOG0069|consen  270 GKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLL  322 (336)
T ss_pred             CCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHH
Confidence            99999999999999977889999999999999999999999999999999974

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=7.5e-61  Score=462.43  Aligned_cols=271  Identities=27%  Similarity=0.364  Sum_probs=234.7

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~   95 (342)
                      |||++.+.++.  ..+.+.+.+ +++..+  ....+.+++    . ++|++++++.+++++++++ .+++  |+|+++++
T Consensus         1 mkIl~d~~~~~--~~~~~~~~~-ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~   67 (378)
T PRK15438          1 MKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA   67 (378)
T ss_pred             CEEEEeCCcch--HHHHHhhcC-cEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence            57999888764  245665543 665543  234455553    3 5999999888899999985 5776  99999999


Q ss_pred             ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh
Q 019328           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~  175 (342)
                      |+||||+++++++||.|+|+||+|+.+||||++++||++.|+.                     |.+|.||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~  126 (378)
T PRK15438         68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN  126 (378)
T ss_pred             cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999862                     2479999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcc----cc
Q 019328          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (342)
Q Consensus       176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~----t~  251 (342)
                      ||+.+|+++ ++|||+|++|||.....               .   . .....++++++++||+|++|+|+|++    |+
T Consensus       127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~---~-~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~  186 (378)
T PRK15438        127 VGRRLQARL-EALGIKTLLCDPPRADR---------------G---D-EGDFRSLDELVQEADILTFHTPLFKDGPYKTL  186 (378)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc---------------c---c-ccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence            999999997 79999999999854311               0   0 01246899999999999999999996    99


Q ss_pred             cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      ||||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++||..++ |+||||||+|.++..+
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~  265 (378)
T PRK15438        187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKAR  265 (378)
T ss_pred             cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988888988765 9999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +..++++|+.
T Consensus       266 ~~~~~~~~l~  275 (378)
T PRK15438        266 GTTQVFEAYS  275 (378)
T ss_pred             HHHHHHHHHH
Confidence            9999999974

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=7.6e-60  Score=456.75  Aligned_cols=271  Identities=25%  Similarity=0.354  Sum_probs=233.9

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~   95 (342)
                      |||++.+.++..  .+.+++.+ ++...+.  ...+.+    .+. ++|++++++.+++++++++ .+++  |+|+++++
T Consensus         1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~~--~~~~~~----~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~   67 (381)
T PRK00257          1 MKIVADENIPLL--DAFFAGFG-EIRRLPG--RAFDRA----AVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI   67 (381)
T ss_pred             CEEEEecCchhH--HHHHhhCC-cEEEcCC--cccCHH----HhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence            689999888742  34555543 5554332  223333    344 5999999888889999987 4665  99999999


Q ss_pred             ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh
Q 019328           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~  175 (342)
                      |+||||+++++++||.|+|+||+|+.+||||++++||++.|+                     .|+++.||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~  126 (381)
T PRK00257         68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH  126 (381)
T ss_pred             cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence            999999999999999999999999999999999999999875                     13589999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCc----ccc
Q 019328          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY  251 (342)
Q Consensus       176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~----~t~  251 (342)
                      ||+.+|+++ ++|||+|++|||..... +                  ......++++++++||+|++|+|+|+    +|+
T Consensus       127 IG~~va~~l-~a~G~~V~~~Dp~~~~~-~------------------~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~  186 (381)
T PRK00257        127 VGGRLVRVL-RGLGWKVLVCDPPRQEA-E------------------GDGDFVSLERILEECDVISLHTPLTKEGEHPTR  186 (381)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc-c------------------cCccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence            999999997 79999999999854321 0                  01124689999999999999999999    599


Q ss_pred             cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      ||||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++||.. |+++|||+||+|.++..+
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r  265 (381)
T PRK00257        187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKAR  265 (381)
T ss_pred             ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888899985 999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +..++.+|+.
T Consensus       266 ~~~~~~~nl~  275 (381)
T PRK00257        266 GTAQIYQALC  275 (381)
T ss_pred             HHHHHHHHHH
Confidence            9999999974

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=6e-59  Score=441.66  Aligned_cols=283  Identities=19%  Similarity=0.228  Sum_probs=230.5

Q ss_pred             EEEEeCCC-CchHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           17 RVVSTKPM-PGTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        17 kvl~~~~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      .+++..+. ....|.+.|++.  +.++..+..       ++    .. ++|+++++..   +.++++ .++|  |+|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-------~~----~~-~a~~~~~~~~---~~~~l~-~~~L--k~I~~~   63 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-------GD----ND-PADYALVWHP---PVEMLA-GRDL--KAVFAL   63 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-------CC----Cc-cCeEEEEeCC---ChHHhc-cCCc--eEEEEc
Confidence            45544333 444578888775  333332211       11    12 5898887642   356665 4666  999999


Q ss_pred             ccccCccChhH-----HHhCCceEEcCCC-CCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 019328           94 AVGYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (342)
Q Consensus        94 g~G~d~id~~~-----a~~~gI~v~n~p~-~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gkt  167 (342)
                      |+|+|++|.+.     +..+||.|+|+++ .++.+||||++++||++.|++..+.+.+++|.|..+     .+.+++|||
T Consensus        64 ~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~t  138 (312)
T PRK15469         64 GAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFT  138 (312)
T ss_pred             ccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCE
Confidence            99999998332     3458999999875 689999999999999999999999999999987532     246899999


Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt  247 (342)
                      |||||+|.||+.+|++| ++|||+|++||++.+...              +..  ......++++++++||+|++|+|+|
T Consensus       139 vgIvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt  201 (312)
T PRK15469        139 IGILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNT  201 (312)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCC
Confidence            99999999999999997 799999999998754310              000  0112458999999999999999999


Q ss_pred             cccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCCCCcH
Q 019328          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK  326 (342)
Q Consensus       248 ~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia~~t~  326 (342)
                      ++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.
T Consensus       202 ~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~  281 (312)
T PRK15469        202 PETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTR  281 (312)
T ss_pred             HHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999875 79999999999999999998


Q ss_pred             HHHHHHHHHHHhhhc
Q 019328          327 WTREGMATLAALNVL  341 (342)
Q Consensus       327 ~~~~~~~~~~~~ni~  341 (342)
                      ++  ++...+.+|+.
T Consensus       282 ~~--~~~~~~~~n~~  294 (312)
T PRK15469        282 PA--EAVEYISRTIA  294 (312)
T ss_pred             HH--HHHHHHHHHHH
Confidence            76  57888888874

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-58  Score=436.11  Aligned_cols=243  Identities=23%  Similarity=0.340  Sum_probs=213.6

Q ss_pred             CccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHH
Q 019328           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (342)
Q Consensus        62 ~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~  141 (342)
                      ++|+++++..       +...++|  |+|++.|+|+|+||+++|+++||.++|. |.++.+||||++++||+++|++..+
T Consensus        34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~  103 (303)
T PRK06436         34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICEN  103 (303)
T ss_pred             CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHH
Confidence            4788865432       1224565  9999999999999999999998888775 7889999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC
Q 019328          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ++.+++|.|..+     .+++|+||||||||+|+||+++|+++ ++|||+|++|||+..+.               +.. 
T Consensus       104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~-  161 (303)
T PRK06436        104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS-  161 (303)
T ss_pred             HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence            999999988632     35799999999999999999999996 79999999999975321               100 


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (342)
Q Consensus       222 ~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~  301 (342)
                         ....++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||+++|++||+++|++|++.||+||||++
T Consensus       162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~  238 (303)
T PRK06436        162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN  238 (303)
T ss_pred             ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence               11358999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCceEEcCCCC-CCcHHHHHHHHHHHHhhhc
Q 019328          302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVL  341 (342)
Q Consensus       302 EP~~~~~L~~~~nvi~TPHia-~~t~~~~~~~~~~~~~ni~  341 (342)
                      ||++++.  .+|||++|||++ +.|.++++++...+++||.
T Consensus       239 EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~  277 (303)
T PRK06436        239 EPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIK  277 (303)
T ss_pred             CCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHH
Confidence            9986543  789999999986 5899999999999999984

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=4.6e-51  Score=359.03  Aligned_cols=177  Identities=42%  Similarity=0.563  Sum_probs=152.1

Q ss_pred             HHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH
Q 019328          128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV  207 (342)
Q Consensus       128 l~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~  207 (342)
                      +++||++.|++..+++.+++|.|  |.+....+++++|+||||||+|+||+.+|+++ ++|||+|++|||+.+...... 
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~~-   76 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGAD-   76 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHHH-
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhcc-
Confidence            68999999999999999999998  22233567899999999999999999999997 799999999999987543110 


Q ss_pred             hhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                       .            .+ ....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus        77 -~------------~~-~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   77 -E------------FG-VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             -H------------TT-EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             -c------------cc-ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence             0            11 135699999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCC
Q 019328          288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA  322 (342)
Q Consensus       288 ~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia  322 (342)
                      +|+++||+||||++||++. +|||++|||++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            9999999999999999875 5999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.98  E-value=2.4e-32  Score=255.17  Aligned_cols=265  Identities=28%  Similarity=0.383  Sum_probs=219.9

Q ss_pred             CHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHH
Q 019328           51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL  130 (342)
Q Consensus        51 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l  130 (342)
                      +..|+.+.+-..+-+-+...+..++++-+++++.+  +++.+.|.|+|++|+.+|.+.||.|||.|+..-+.+|+-++..
T Consensus        62 stqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h  139 (435)
T KOG0067|consen   62 STQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH  139 (435)
T ss_pred             chHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence            44555543321222222333456788888998887  9999999999999999999999999999999999999999999


Q ss_pred             HHHHHhchHHHHHHHHcCCCCC-CCCC---cccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 019328          131 SLAAARRIVEADEFMRAGLYDG-WLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (342)
Q Consensus       131 ~L~~~R~~~~~~~~~~~g~w~~-w~~~---~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~  206 (342)
                      +|.++|+-....+.+++|.|.+ |...   ........|.++|++|+|+.|+.++.+ +++||..|+.||++...-.+. 
T Consensus       140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~-  217 (435)
T KOG0067|consen  140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK-  217 (435)
T ss_pred             HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh-
Confidence            9999999999999999998842 2111   112346899999999999999999999 599999999999997653322 


Q ss_pred             HhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL  286 (342)
                                    ..+..+..++.+++.++|.+++||.+++.++++|+.-.+++|+.|++++|++||.++|+++|.+||
T Consensus       218 --------------~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaL  283 (435)
T KOG0067|consen  218 --------------SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQAL  283 (435)
T ss_pred             --------------hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhh
Confidence                          123344567999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCccEEEeecCCCCCC--CCCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhh
Q 019328          287 KQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNV  340 (342)
Q Consensus       287 ~~g~i~gaalDV~~~EP~--~~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni  340 (342)
                      ++|++.+++       |.  ...||-+.||.|+|||.++++..+.-+|...++..+
T Consensus       284 k~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~ei  332 (435)
T KOG0067|consen  284 KSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEI  332 (435)
T ss_pred             ccCceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhh
Confidence            999999998       32  124799999999999999999888777777666544

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.89  E-value=4.1e-22  Score=196.39  Aligned_cols=171  Identities=20%  Similarity=0.314  Sum_probs=137.4

Q ss_pred             EcccccCccC-hhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI  170 (342)
                      -+++|+..+- ++.....||+|+|+|++++.+++|+++++++++.      +..+|.+           +.++.||++||
T Consensus       197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~-----------~~~LaGKtVgV  259 (476)
T PTZ00075        197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT-----------DVMIAGKTVVV  259 (476)
T ss_pred             cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc-----------CCCcCCCEEEE
Confidence            3467776542 2233346899999999999999999999999988      3345553           24799999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      +|+|.||+.+|+++ ++|||+|+++++++........              .++ ...+++++++.||+|++|.    .|
T Consensus       260 IG~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~--------------~G~-~~~~leell~~ADIVI~at----Gt  319 (476)
T PTZ00075        260 CGYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAAM--------------EGY-QVVTLEDVVETADIFVTAT----GN  319 (476)
T ss_pred             ECCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHh--------------cCc-eeccHHHHHhcCCEEEECC----Cc
Confidence            99999999999997 7999999999877654322110              111 2357999999999999994    47


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK  306 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~  306 (342)
                      +++|+++.|++||+|++|||+||+   |++.+.++|+.+.    ++||++.||...
T Consensus       320 ~~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        320 KDIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             ccccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            899999999999999999999999   7888999998754    799999999653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.85  E-value=1.9e-20  Score=176.22  Aligned_cols=200  Identities=19%  Similarity=0.204  Sum_probs=146.3

Q ss_pred             HHHHHHHhCCCeEEEecCCC--C---CCCHHHHHHH-hcCCccEEEecCC----------------cCccHHHHHHhhcc
Q 019328           28 RWINLLIEQDCRVEICTQKK--T---ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRA   85 (342)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~--~---~~~~~~~~~~-~~~~~d~~i~~~~----------------~~~~~~~~~~~~~l   85 (342)
                      ...+.|.+.|+.+..+..+.  .   .....++.+. +. ++|++|...+                .++++++++++|  
T Consensus        15 ~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~--   91 (287)
T TIGR02853        15 ELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK--   91 (287)
T ss_pred             HHHHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcC--
Confidence            45677888898886653321  1   0112222222 33 5888875321                224678888776  


Q ss_pred             CCceEEEcccccCccChh-HHHhCCceEE------cCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcc
Q 019328           86 GGKAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF  158 (342)
Q Consensus        86 ~~k~i~~~g~G~d~id~~-~a~~~gI~v~------n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~  158 (342)
                         .++...+|+++.|++ +|+++||.|+      |++.+|+.++||+++.+++..                        
T Consensus        92 ---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------  144 (287)
T TIGR02853        92 ---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------  144 (287)
T ss_pred             ---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------
Confidence               355677889999988 9999999999      999999999999999877732                        


Q ss_pred             cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+.+++|++++|+|+|.||+.+|++| +++|++|++++|+.+.....  ...       +   .......+++++++++|
T Consensus       145 ~~~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~--~~~-------g---~~~~~~~~l~~~l~~aD  211 (287)
T TIGR02853       145 TDFTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLARI--TEM-------G---LIPFPLNKLEEKVAEID  211 (287)
T ss_pred             cCCCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HHC-------C---CeeecHHHHHHHhccCC
Confidence            12378999999999999999999997 79999999999987542111  000       1   11112346788999999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +|++|+|.+     +++++.++.||+++++||++..+
T Consensus       212 iVint~P~~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       212 IVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             EEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            999999964     67899999999999999998744

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.73  E-value=4.5e-17  Score=136.24  Aligned_cols=101  Identities=31%  Similarity=0.428  Sum_probs=85.8

Q ss_pred             EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccccc
Q 019328           18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (342)
Q Consensus        18 vl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~   97 (342)
                      ||+++++++. ..+.|++ +++++++.    ..+.+++.+.+. ++|++++...+++++++++.+|+|  |+|++.|+|+
T Consensus         1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~-~~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~   71 (133)
T PF00389_consen    1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLK-DADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV   71 (133)
T ss_dssp             EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHT-TESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred             eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhC-CCeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence            6888988764 4678887 66887654    347889998887 499999987777999999999987  9999999999


Q ss_pred             CccChhHHHhCCceEEcCCCCCchhHHHHH
Q 019328           98 NNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (342)
Q Consensus        98 d~id~~~a~~~gI~v~n~p~~~~~~vAE~a  127 (342)
                      |+||+++|+++||.|+|+||+++.+||||+
T Consensus        72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.70  E-value=1.2e-15  Score=144.51  Aligned_cols=196  Identities=19%  Similarity=0.188  Sum_probs=142.0

Q ss_pred             HHHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCccEEEecCC----------------cCccHHHHHHh
Q 019328           28 RWINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAAL   82 (342)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~d~~i~~~~----------------~~~~~~~~~~~   82 (342)
                      ...+.|.+.|+++.+...++...         +.++   .+. ++|+++.-.+                ..++++.++.+
T Consensus        16 ~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l   91 (296)
T PRK08306         16 ELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELT   91 (296)
T ss_pred             HHHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhc
Confidence            45677888999987654433211         2222   333 5898875421                12367889999


Q ss_pred             hccCCceEEEcccccCccChhHHHhCCceEEcCCCC------CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC
Q 019328           83 SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN  156 (342)
Q Consensus        83 ~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~------~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~  156 (342)
                      |+.  ..+ ..|.+.+++| +.|.++||.+.+.+..      |+.++||.++.+++.   +                   
T Consensus        92 ~~~--~~v-~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~---~-------------------  145 (296)
T PRK08306         92 PEH--CTI-FSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE---H-------------------  145 (296)
T ss_pred             CCC--CEE-EEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH---h-------------------
Confidence            985  433 3589999998 8899999999987754      888999997765431   0                   


Q ss_pred             cccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328          157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       157 ~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                        .+.++.|++++|+|+|.+|+.+++.| +++|++|+++||++.....  ...+       +   .......++.+.+++
T Consensus       146 --~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~--~~~~-------G---~~~~~~~~l~~~l~~  210 (296)
T PRK08306        146 --TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLAR--ITEM-------G---LSPFHLSELAEEVGK  210 (296)
T ss_pred             --CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH--HHHc-------C---CeeecHHHHHHHhCC
Confidence              12367899999999999999999997 7999999999999754221  1111       1   111123467888999


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +|+|+.++|.     .+++++.++.|++++++||++.
T Consensus       211 aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        211 IDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence            9999999983     4688999999999999999975

>PLN02494 adenosylhomocysteinase

Probab=99.69  E-value=8.5e-17  Score=158.50  Aligned_cols=122  Identities=19%  Similarity=0.293  Sum_probs=102.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..+.||+++|+|+|.||+.+|+++ ++|||+|+++++++.........              ++. ..+++++++.+|+|
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~--------------G~~-vv~leEal~~ADVV  313 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALME--------------GYQ-VLTLEDVVSEADIF  313 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhc--------------CCe-eccHHHHHhhCCEE
Confidence            357999999999999999999996 79999999999887543222111              111 24789999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCC-CccCCHHHHHHH--HHcCCccEEEeecCCCCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR-G~~vd~~aL~~a--L~~g~i~gaalDV~~~EP  303 (342)
                      +.    +..++++++++.|+.||+|++|+|+|| +..||+++|.++  ++.+.+. +.+|+|+.|-
T Consensus       314 I~----tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        314 VT----TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             EE----CCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            97    456889999999999999999999999 689999999998  9999888 9999999865

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.64  E-value=5.8e-15  Score=144.37  Aligned_cols=121  Identities=26%  Similarity=0.283  Sum_probs=101.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++....+...              .++ ...+++++++.+|+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~~--------------~G~-~v~~leeal~~aDVV  254 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAAM--------------DGF-RVMTMEEAAKIGDIF  254 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHHh--------------cCC-EeCCHHHHHhcCCEE
Confidence            358999999999999999999996 8999999999887654322211              111 234678899999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHHHHcCCccEEEeecCCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED  301 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~aL~~g~i~gaalDV~~~  301 (342)
                      +.+..    +.++|+.+.|..||+|++++|+||+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus       255 ItaTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       255 ITATG----NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             EECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            87643    688999999999999999999999998 9999999999988889999999884

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.54  E-value=1.7e-14  Score=136.09  Aligned_cols=97  Identities=24%  Similarity=0.266  Sum_probs=77.3

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..|+||||||||+|.||+++|++| ++||++|++|++........  .       .     .+.. ..++++++++||+|
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~~~A--~-------~-----~G~~-v~sl~Eaak~ADVV   75 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSFEVA--K-------A-----DGFE-VMSVSEAVRTAQVV   75 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhhHHH--H-------H-----cCCE-ECCHHHHHhcCCEE
Confidence            479999999999999999999998 79999999998653321110  0       0     1111 34899999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ++|+|+ ++++++++++.+..||+|++|+- |.|=
T Consensus        76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f-~hgf  108 (335)
T PRK13403         76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF-SHGF  108 (335)
T ss_pred             EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE-CCCc
Confidence            999997 77899999999999999998873 3443

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.47  E-value=1.3e-12  Score=128.55  Aligned_cols=156  Identities=21%  Similarity=0.267  Sum_probs=112.1

Q ss_pred             EcccccCcc-ChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328           92 NMAVGYNNV-DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        92 ~~g~G~d~i-d~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI  170 (342)
                      -+++|+... ..+...+.+++|.|++..+..+.-|...+.-.+....+      .+.           .+..+.|++++|
T Consensus       155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai------~ra-----------t~~~l~Gk~VlV  217 (425)
T PRK05476        155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGI------KRA-----------TNVLIAGKVVVV  217 (425)
T ss_pred             cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHH------HHh-----------ccCCCCCCEEEE
Confidence            457777664 33333467899999999888775554333222222111      111           123589999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      +|+|.||+.+|+++ +++|++|+++|+++....+...              .++. ..+++++++.+|+|+.+.    .+
T Consensus       218 iG~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~--------------~G~~-v~~l~eal~~aDVVI~aT----G~  277 (425)
T PRK05476        218 AGYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAAM--------------DGFR-VMTMEEAAELGDIFVTAT----GN  277 (425)
T ss_pred             ECCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHh--------------cCCE-ecCHHHHHhCCCEEEECC----CC
Confidence            99999999999997 7999999999988754322211              0111 347899999999998875    35


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHH
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~  284 (342)
                      .++|+.+.|+.||+|++++|+|+... +|.++|.+
T Consensus       278 ~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        278 KDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            77899999999999999999999886 78888764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.38  E-value=1.1e-12  Score=113.49  Aligned_cols=111  Identities=23%  Similarity=0.258  Sum_probs=85.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|++| ..-|.+|++|||++++.. .+.+             .+.....++.|++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~~-~~~~-------------~g~~~~~s~~e~~~~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKAE-ALAE-------------AGAEVADSPAEAAEQADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHHH-HHHH-------------TTEEEESSHHHHHHHBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhhh-hhHH-------------hhhhhhhhhhhHhhcccceEeecc
Confidence            5899999999999999998 578999999999976532 2211             123456799999999999999999


Q ss_pred             CCcccccccC-HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       246 lt~~t~~li~-~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      ..++++.++. .+.++.+++|.++||++...+-....+.+.+.+..+
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~  113 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGV  113 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE
T ss_pred             cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccc
Confidence            8888887763 237888999999999999999999999999987653

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.36  E-value=3.2e-12  Score=119.38  Aligned_cols=124  Identities=21%  Similarity=0.153  Sum_probs=100.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+||+||+|.||.++|++| ..-|..|.+|||++.+..+. ..       .     .+.....+..|+.+.||+|++|+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~-~~-------~-----~Ga~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL-LA-------A-----AGATVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH-HH-------H-----cCCcccCCHHHHHHhCCEEEEecC
Confidence            4799999999999999998 57899999999998763221 11       1     123345788999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  303 (342)
                      ..++.+.++.  ...++.||||+++||+|+.+....+.+.++++++.+...--=|.-..+
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            9999999885  579999999999999999999999999999999876544222444433

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.34  E-value=7.6e-12  Score=107.20  Aligned_cols=105  Identities=29%  Similarity=0.426  Sum_probs=76.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..+.||++.|+|||.+|+.+|+.| +++|++|.+++..|-...++..++|               ...+++++++++|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~   82 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF   82 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence            479999999999999999999997 7999999999999877666655443               235799999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHH
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~a  285 (342)
                      +.+.-    .++++..+.|++||+|+++.|++.-.. +|-+.|.+.
T Consensus        83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeecccccc
Confidence            98855    467889999999999999999987654 566665443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.27  E-value=1.6e-11  Score=115.99  Aligned_cols=111  Identities=19%  Similarity=0.168  Sum_probs=88.6

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      +|||||+|.||+.+|+.| ...|.+|++|||++... +.+.        ..     +.....++++++++||+|++|+|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DELL--------AA-----GAVTAETARQVTEQADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HC-----CCcccCCHHHHHhcCCEEEEecCC
Confidence            489999999999999998 57899999999987542 2111        11     112245788999999999999998


Q ss_pred             Cccccccc-C-HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       247 t~~t~~li-~-~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++++.++ + ...+..+++|+++||++++.+.+.+++.+.++++.+.
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            88887775 3 3467889999999999999998889999999886433

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.26  E-value=2e-11  Score=115.38  Aligned_cols=123  Identities=19%  Similarity=0.206  Sum_probs=93.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|+.+ ...|.+|++|||++.... ...        ..     +.....++++++++||+|++|+|
T Consensus         3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~~-~~~--------~~-----g~~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAVA-EVI--------AA-----GAETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HHH--------HC-----CCeecCCHHHHHhcCCEEEEeCC
Confidence            5799999999999999998 578999999999875421 111        01     11234678999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  303 (342)
                      .+.+++.++.  ...+..+++|.++||+|+..+...+++.+.+.+..+...---|+-.+|
T Consensus        68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            8888887764  346788999999999999999888899999987655433223444333

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.21  E-value=5.7e-11  Score=112.60  Aligned_cols=112  Identities=13%  Similarity=0.173  Sum_probs=90.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||..+|+.| ...|.+|++||+++.+. +.+..        .     +.....++.+++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~~~--------~-----g~~~~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DALVD--------K-----GATPAASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH--------c-----CCcccCCHHHHHhcCCEEEEecC
Confidence            4799999999999999998 46789999999987643 22111        1     12234688899999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ...+++..+.  ...+..+++|.++||+|++.+...+.+.+.+.+..+.
T Consensus        67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8777777764  3467789999999999999999999999999987655

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.21  E-value=7.5e-11  Score=111.92  Aligned_cols=113  Identities=19%  Similarity=0.253  Sum_probs=90.4

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l~  243 (342)
                      +|||||+|.||+.+|++| ...|.+|++|||+++... ...        .     .+.....++++++++   +|+|++|
T Consensus         2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~~-~~~--------~-----~g~~~~~s~~~~~~~~~~advVi~~   66 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAVD-VAG--------K-----LGITARHSLEELVSKLEAPRTIWVM   66 (299)
T ss_pred             EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHHH-HHH--------H-----CCCeecCCHHHHHHhCCCCCEEEEE
Confidence            699999999999999998 578999999999875421 111        1     112234688898876   6999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD  297 (342)
                      +|..+.++.++ .+.+..+++|.++||+|++...+...+.+.+.+..+.  -+|
T Consensus        67 vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         67 VPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             ecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            99887888877 4677889999999999999999999999999887643  355

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.20  E-value=2e-10  Score=112.91  Aligned_cols=105  Identities=24%  Similarity=0.349  Sum_probs=83.4

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++........              .++ ...++++.+..+|+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A~~--------------~G~-~~~~~~e~v~~aDV  260 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQAAM--------------EGY-EVMTMEEAVKEGDI  260 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHHHh--------------cCC-EEccHHHHHcCCCE
Confidence            3568999999999999999999996 8999999999988654322211              111 12356788899999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHH
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~  284 (342)
                      |+.+..    +.+.++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus       261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            998753    467788889999999999999999886 78887764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.13  E-value=8.6e-11  Score=112.23  Aligned_cols=120  Identities=22%  Similarity=0.180  Sum_probs=85.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..|+|++|||||+|+||+++|+.| +.+|++|+++++...+.... ...            .+.. ..+.++++++||+|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~-A~~------------~G~~-~~s~~eaa~~ADVV   77 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK-AEA------------DGFE-VLTVAEAAKWADVI   77 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH-HHH------------CCCe-eCCHHHHHhcCCEE
Confidence            468999999999999999999998 79999999887764322111 000            1112 24889999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM  305 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~  305 (342)
                      ++++|.+.. ..+++++.+..|++|++| -.+-|--+..  +.      ..-+..+||+...|..
T Consensus        78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~--~~------~~p~~~~~Vi~vaPn~  132 (330)
T PRK05479         78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIHF--GQ------IVPPADVDVIMVAPKG  132 (330)
T ss_pred             EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChhh--ce------eccCCCCcEEEeCCCC
Confidence            999997655 777778888999999988 4555522211  10      1124557888888753

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.10  E-value=5.1e-10  Score=106.31  Aligned_cols=110  Identities=20%  Similarity=0.244  Sum_probs=88.6

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l~  243 (342)
                      +|||||+|.||+.+|++| ...|.+|.+||++++... .+.        .     .+.....+++++++.   +|+|+++
T Consensus         2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~~-~~~--------~-----~g~~~~~~~~e~~~~~~~~dvvi~~   66 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAVE-ALA--------E-----EGATGADSLEELVAKLPAPRVVWLM   66 (301)
T ss_pred             EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHHH-HHH--------H-----CCCeecCCHHHHHhhcCCCCEEEEE
Confidence            799999999999999998 578999999999976432 111        1     112234688888876   6999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|..+.++.++ ...+..+++|.++||++++.......+.+.+++..+.
T Consensus        67 v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~  114 (301)
T PRK09599         67 VPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH  114 (301)
T ss_pred             ecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence            99877777776 4677889999999999999999999999999887654

>PLN02712 arogenate dehydrogenase

Probab=99.08  E-value=4.3e-10  Score=117.24  Aligned_cols=113  Identities=16%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cC
Q 019328          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA  237 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~s  237 (342)
                      .|+++.+++|||||+|.||+.+|+.+ +.+|++|++||++....  . ...            .+.....+++++++ .+
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~--~-a~~------------~Gv~~~~~~~el~~~~a  426 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSD--E-AQK------------LGVSYFSDADDLCEEHP  426 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHH--H-HHH------------cCCeEeCCHHHHHhcCC
Confidence            35678999999999999999999998 68899999999985321  1 011            11123468888876 58


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      |+|++|+| ...+..++.+-....||+|+++++++.++-...+.+.+.+..
T Consensus       427 DvVILavP-~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        427 EVILLCTS-ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             CEEEECCC-hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            99999999 467888777655557999999999999884444555555444

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.02  E-value=1e-09  Score=110.35  Aligned_cols=128  Identities=12%  Similarity=0.143  Sum_probs=99.6

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l~  243 (342)
                      +||+||+|.||+.+|++|+ .-|.+|.+|||++++. +.+.+..    ...+...  .....+++++++.   +|+|++|
T Consensus         8 ~IG~IGLG~MG~~mA~nL~-~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKV-DETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence            6999999999999999984 6799999999997653 2222110    0001110  1134688898876   9999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  303 (342)
                      +|..+.+..++ ...+..+++|.++||+|+...-+...+.+.+++..+.....=|.-.++
T Consensus        80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            99999999888 568889999999999999999999999999998877766555665555

>PLN02256 arogenate dehydrogenase

Probab=99.00  E-value=5e-09  Score=99.63  Aligned_cols=136  Identities=13%  Similarity=0.141  Sum_probs=90.1

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~  241 (342)
                      -++++|||||+|.||+.+|+.+ +..|.+|++||++....   ....+            +.....++++++ ..+|+|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~---~a~~~------------gv~~~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSD---IAAEL------------GVSFFRDPDDFCEEHPDVVL   97 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHH---HHHHc------------CCeeeCCHHHHhhCCCCEEE
Confidence            4667999999999999999997 67899999999885321   11111            112245788876 4799999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----CCccCCCceEE
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PGLSEMKNAIV  317 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----~~L~~~~nvi~  317 (342)
                      +|+|. ..+..++.+-....+++++++++++.+.-...+++.+.+..+.      .+...=|...    ...+.-.++++
T Consensus        98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~  170 (304)
T PLN02256         98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVY  170 (304)
T ss_pred             EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEE
Confidence            99994 4566666543356789999999999976554555665554321      2222334221    13455566777


Q ss_pred             cCCC
Q 019328          318 VPHI  321 (342)
Q Consensus       318 TPHi  321 (342)
                      +|+.
T Consensus       171 ~~~~  174 (304)
T PLN02256        171 DKVR  174 (304)
T ss_pred             ecce
Confidence            7653

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.98  E-value=2e-09  Score=101.91  Aligned_cols=113  Identities=14%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      +|||||+|+||..+|+.| ...|.+|.+||++++.  +.+..             .+.....+..+++++||+|++|+|.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~~~-------------~g~~~~~s~~~~~~~advVi~~v~~   65 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DELLS-------------LGAVSVETARQVTEASDIIFIMVPD   65 (292)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHHHH-------------cCCeecCCHHHHHhcCCEEEEeCCC
Confidence            699999999999999998 5778999999987632  22111             1122346888999999999999998


Q ss_pred             CcccccccCH--hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee
Q 019328          247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       247 t~~t~~li~~--~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD  297 (342)
                      .++.+..+..  ..+..+++|.++|++|....-....+.+.+.+..+.  .+|
T Consensus        66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd  116 (292)
T PRK15059         66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD  116 (292)
T ss_pred             hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence            8777776632  357778999999999999999999999998876443  445

>PLN02858 fructose-bisphosphate aldolase

Probab=98.94  E-value=3.5e-09  Score=118.01  Aligned_cols=119  Identities=14%  Similarity=0.146  Sum_probs=95.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ..++||+||+|.||..||++| ..-|.+|.+||+++.+. +.+.+             .+.....++.++.++||+|++|
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l~~-------------~Ga~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLM-EKFCE-------------LGGHRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH-------------cCCeecCCHHHHHhcCCEEEEE
Confidence            357899999999999999998 47799999999987643 22211             1223457999999999999999


Q ss_pred             CCCCccccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee
Q 019328          244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       244 lplt~~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD  297 (342)
                      +|..++.+.++  ....++.+++|.++|++|+..+-....+.+.+++..-...-+|
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD  123 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD  123 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence            99999988887  3567888999999999999999999999999987651123455

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.94  E-value=3.4e-09  Score=106.27  Aligned_cols=128  Identities=15%  Similarity=0.227  Sum_probs=98.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh---cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sDiV~l  242 (342)
                      .+|||||+|.||..+|++| ..-|.+|.+|||+++... .+.+.       ....+.......+++++++   ++|+|++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~-~l~~~-------~~~~g~~i~~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTE-EFVKK-------AKEGNTRVKGYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHHh-------hhhcCCcceecCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999998 477899999999987532 22110       0000111123568999886   5899999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  303 (342)
                      ++|....++.++ ++.+..+++|.++|+++.+..-|...+.+.+.+..+.....=|.-.++
T Consensus        73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            999888888888 567788999999999999999999999999998877655544555444

>PLN02858 fructose-bisphosphate aldolase

Probab=98.92  E-value=4.1e-09  Score=117.45  Aligned_cols=110  Identities=19%  Similarity=0.248  Sum_probs=90.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      +.++|||||+|.||..+|++| ...|.+|++||+++.... .+..        .     +.....++.+++++||+|++|
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~l~~--------~-----Ga~~~~s~~e~~~~aDvVi~~  387 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTLV-RFEN--------A-----GGLAGNSPAEVAKDVDVLVIM  387 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHHH--------c-----CCeecCCHHHHHhcCCEEEEe
Confidence            348899999999999999998 588999999999876432 1111        1     112246889999999999999


Q ss_pred             CCCCccccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       244 lplt~~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      +|..++++.++  ....++.+++|.++||+|+..+-..+.+.+.+.+
T Consensus       388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~  434 (1378)
T PLN02858        388 VANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN  434 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence            99999998887  3467889999999999999999888999999887

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.91  E-value=1.2e-08  Score=96.63  Aligned_cols=118  Identities=25%  Similarity=0.247  Sum_probs=78.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhccCCCC-------Cccc-cccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQ-------PVTW-KRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~-~~~~~l~ell~  235 (342)
                      ++|||||+|.||..+|+.++ ..|.+|++||+++......  .....-..+...+..       ..+. ....+. +.++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~   82 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR   82 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence            68999999999999999984 7799999999987643210  000000000000100       0001 112344 5679


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHc
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~  288 (342)
                      .||+|+.|+|..++.+..+..+..+.++++++|+ |+|.-.   ...+.+.+..
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~  133 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR  133 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence            9999999999999999888888778899999987 777664   4556666653

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.91  E-value=1e-08  Score=97.33  Aligned_cols=109  Identities=18%  Similarity=0.260  Sum_probs=84.2

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH---hhcCCEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISLH  243 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~sDiV~l~  243 (342)
                      +|||||+|.||..+|+.| ...|.+|.+|||++... +.+.+        .+     .....+++++   +..+|+|+++
T Consensus         2 ~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l~~--------~g-----~~~~~s~~~~~~~~~~~dvIi~~   66 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAMKE--------DR-----TTGVANLRELSQRLSAPRVVWVM   66 (298)
T ss_pred             EEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHH--------cC-----CcccCCHHHHHhhcCCCCEEEEE
Confidence            799999999999999998 46799999999997653 22111        11     1112355554   4568999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|.. .++.++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus        67 vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        67 VPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             cCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            9976 777776 4667789999999999999999999999999876654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.87  E-value=6.1e-09  Score=96.60  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=94.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ....++||+||+|.||..++..| -..|.+|.+|||+.++.. .|.+             .+.....++.|+.+.||+|+
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~~-~f~~-------------~Ga~v~~sPaeVae~sDvvi   96 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKCK-EFQE-------------AGARVANSPAEVAEDSDVVI   96 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHHH-HHHH-------------hchhhhCCHHHHHhhcCEEE
Confidence            45688999999999999999998 578999999999987642 2211             22344679999999999999


Q ss_pred             EcCCCCcccccccC--HhHHccCCCCcEE-EecCCCccCCHHHHHHHHHcCCc
Q 019328          242 LHPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       242 l~lplt~~t~~li~--~~~l~~mk~gail-IN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      .++|...+.++++.  ...++..++|... |+.|+-+.--...|.+++.....
T Consensus        97 tmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~  149 (327)
T KOG0409|consen   97 TMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG  149 (327)
T ss_pred             EEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence            99999999998873  4578888888777 89999988888899999987643

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.86  E-value=6.2e-09  Score=98.21  Aligned_cols=111  Identities=20%  Similarity=0.192  Sum_probs=85.1

Q ss_pred             EEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcc
Q 019328          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (342)
Q Consensus       170 IiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~  249 (342)
                      |||+|.||..+|+.| ...|.+|.+|||++.... .+.        ..     +.....++.+++++||+|++|+|...+
T Consensus         1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~~-~l~--------~~-----g~~~~~s~~~~~~~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAVE-EAV--------AA-----GAQAAASPAEAAEGADRVITMLPAGQH   65 (288)
T ss_pred             CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHHH-HHH--------Hc-----CCeecCCHHHHHhcCCEEEEeCCChHH
Confidence            689999999999998 577999999999876432 111        11     122346889999999999999998777


Q ss_pred             cccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee
Q 019328          250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       250 t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD  297 (342)
                      ++.++.  ...+..+++|.++||++..++-..+.+.+.+++..+.  .+|
T Consensus        66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            777763  4567789999999999988877778888888765443  355

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.86  E-value=2.5e-08  Score=99.43  Aligned_cols=144  Identities=15%  Similarity=0.202  Sum_probs=95.9

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+||| +|.||+.+|+.| +..|.+|.+|++++.... ......            +.....++++.+++||+|++|+
T Consensus         1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~-~~a~~~------------gv~~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGK-EVAKEL------------GVEYANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHH-HHHHHc------------CCeeccCHHHHhccCCEEEEec
Confidence            3799997 999999999997 678999999999865321 111111            1122357888899999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CCCCccCCCceEEcCCCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIA  322 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvi~TPHia  322 (342)
                      |. ..+..++ ++....+++++++++++.......+++.+.+..+      ..+...-|.  |..+++.-..+++||+-+
T Consensus        67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~------~~~V~~HPmaGp~~~~~~g~~~il~p~~~  138 (437)
T PRK08655         67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEG------VEILPTHPMFGPRTPSLKGQVVILTPTEK  138 (437)
T ss_pred             CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCC------CEEEEcCCCCCCCCcccCCCEEEEecCCC
Confidence            95 3445544 5566778999999999986544445555554432      123333443  334677778899999753


Q ss_pred             CCcHHHHHHH
Q 019328          323 SASKWTREGM  332 (342)
Q Consensus       323 ~~t~~~~~~~  332 (342)
                       .+.+..+.+
T Consensus       139 -~~~~~~~~v  147 (437)
T PRK08655        139 -RSNPWFDKV  147 (437)
T ss_pred             -CCHHHHHHH
Confidence             344444333

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.85  E-value=8.8e-09  Score=98.28  Aligned_cols=98  Identities=24%  Similarity=0.241  Sum_probs=69.3

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      |+||+|||||+|+||+++|+.| +.+|++|+++++......+... .            .+.. ..+..+++++||+|++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a~-~------------~Gv~-~~s~~ea~~~ADiVvL   65 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKAT-E------------DGFK-VGTVEEAIPQADLIMN   65 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHHH-H------------CCCE-ECCHHHHHhcCCEEEE
Confidence            5799999999999999999998 6889998776554322211110 0            1111 2468889999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      ++|... ....+.++....|+++. +|.++-|=-+
T Consensus        66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence            999332 34445566778899886 7888777644

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.82  E-value=3.9e-08  Score=92.37  Aligned_cols=140  Identities=14%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      +|||||+|.||+++|+.| +..|.+|++||+++.......         ..+...   ....+. +.+++||+|++|+|.
T Consensus         2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a~---------~~g~~~---~~~~~~-~~~~~aDlVilavp~   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERAI---------ERGLVD---EASTDL-SLLKDCDLVILALPI   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHH---------HCCCcc---cccCCH-hHhcCCCEEEEcCCH
Confidence            799999999999999998 567999999999865422110         011100   111233 467899999999994


Q ss_pred             CcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----------CCccCCCceE
Q 019328          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKNAI  316 (342)
Q Consensus       247 t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----------~~L~~~~nvi  316 (342)
                      .. +..+ -++....+++++++++++.-..   . ..+++....-.     +..--|...          ..|+.-.+++
T Consensus        68 ~~-~~~~-~~~l~~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~-----~v~~HPm~G~~~~g~~~a~~~lf~g~~~~  136 (279)
T PRK07417         68 GL-LLPP-SEQLIPALPPEAIVTDVGSVKA---P-IVEAWEKLHPR-----FVGSHPMAGTAESGVEAGQRGLFKNRPWV  136 (279)
T ss_pred             HH-HHHH-HHHHHHhCCCCcEEEeCcchHH---H-HHHHHHHhhCC-----ceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence            33 3333 3566677899999999887552   2 33333322111     111113211          1267778899


Q ss_pred             EcCCCCCCcHHHHHHH
Q 019328          317 VVPHIASASKWTREGM  332 (342)
Q Consensus       317 ~TPHia~~t~~~~~~~  332 (342)
                      +||+-.+ +.+..+.+
T Consensus       137 l~p~~~~-~~~~~~~v  151 (279)
T PRK07417        137 LTPTENT-DLNALAIV  151 (279)
T ss_pred             EccCCCC-CHHHHHHH
Confidence            9997653 44444433

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.82  E-value=1.8e-08  Score=101.00  Aligned_cols=125  Identities=21%  Similarity=0.255  Sum_probs=91.9

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH  243 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDiV~l~  243 (342)
                      .|||||+|.||+.+|++| ..-|.+|.+|||++++. +.+.+.+        ..+.......+++++.   +++|+|+++
T Consensus         1 ~IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~-~~l~~~~--------~~g~~~~~~~s~~e~v~~l~~~dvIil~   70 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKT-DEFLAEH--------AKGKKIVGAYSIEEFVQSLERPRKIMLM   70 (467)
T ss_pred             CEEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHhhc--------cCCCCceecCCHHHHHhhcCCCCEEEEE
Confidence            389999999999999998 46799999999998653 2221110        0000112235677766   468999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E  302 (342)
                      +|..+.+..++ .+.+..+++|.++||++....-|...+.+.+.+..+.....=|.-.+
T Consensus        71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~  128 (467)
T TIGR00873        71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE  128 (467)
T ss_pred             CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence            99877788877 46778899999999999999999999999998876654433344443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.81  E-value=4.4e-08  Score=93.26  Aligned_cols=149  Identities=20%  Similarity=0.174  Sum_probs=88.5

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .++|||||+|.||+.+|+.+ +..|  .+|++||+++......  ..       .+   .......++++.+++||+|++
T Consensus         6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~a--~~-------~g---~~~~~~~~~~~~~~~aDvVii   72 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETRARA--RE-------LG---LGDRVTTSAAEAVKGADLVIL   72 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHHH--Hh-------CC---CCceecCCHHHHhcCCCEEEE
Confidence            46899999999999999997 4556  4899999987542111  01       11   111123467888999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeec---CCCCC-CC---CCCccCCCce
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV---FEDEP-YM---KPGLSEMKNA  315 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV---~~~EP-~~---~~~L~~~~nv  315 (342)
                      |+|.. .+..+ .++....++++.++++++....--.+++.+.+..+ +.  .+..   +..|- .+   ..+|+.-.++
T Consensus        73 avp~~-~~~~v-~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~-~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~  147 (307)
T PRK07502         73 CVPVG-ASGAV-AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEG-VH--FIPGHPLAGTEHSGPDAGFAELFENRWC  147 (307)
T ss_pred             CCCHH-HHHHH-HHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCC-Ce--EEeCCCCCCCcccchhhcCHHHHCCCeE
Confidence            99953 23333 34555678999999999765421122222222211 11  2222   11111 01   1257777789


Q ss_pred             EEcCCCCCCcHHHHHHH
Q 019328          316 IVVPHIASASKWTREGM  332 (342)
Q Consensus       316 i~TPHia~~t~~~~~~~  332 (342)
                      ++||+-++ +.++.+.+
T Consensus       148 ~l~~~~~~-~~~~~~~~  163 (307)
T PRK07502        148 ILTPPEGT-DPAAVARL  163 (307)
T ss_pred             EEeCCCCC-CHHHHHHH
Confidence            99997543 44554443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.81  E-value=5.2e-08  Score=93.22  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=97.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhccCCCC----CccccccCCHHHHhhcCCE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~sDi  239 (342)
                      ++|||||.|.||..+|..++ ..|++|..||+++.....  ......-..+...+..    ........++++.++.||+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999999999999999974 789999999998754211  1111000001111100    0011234689999999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP  319 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TP  319 (342)
                      |+-++|.+.+.++-+.++.-+.++++++| .++.. -+...++.+.++. +-...++=-|.+  +.--||.+   |+-+|
T Consensus        87 ViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~-p~R~~g~HffnP--~~~~pLVE---Vv~g~  158 (321)
T PRK07066         87 IQESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH-PERCVVGHPFNP--VYLLPLVE---VLGGE  158 (321)
T ss_pred             EEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC-cccEEEEecCCc--cccCceEE---EeCCC
Confidence            99999999999998888898999999855 44444 3467778887754 223333333322  11123333   56666


Q ss_pred             CCCCCcHHH
Q 019328          320 HIASASKWT  328 (342)
Q Consensus       320 Hia~~t~~~  328 (342)
                      +.+-.+.+.
T Consensus       159 ~T~~e~~~~  167 (321)
T PRK07066        159 RTAPEAVDA  167 (321)
T ss_pred             CCCHHHHHH
Confidence            655444333

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.80  E-value=5.2e-08  Score=91.91  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhc---cCCCCC--------ccccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~l~ell  234 (342)
                      ++|+|||.|.||..+|..++ ..|.+|++||+++..... ..........   ..+...        .......++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQLES-AQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            58999999999999999974 679999999998764221 1110000000   000000        0012246788999


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEE-EecCCCccCCHHHHHHHHHcCCccEEEeecC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gail-IN~sRG~~vd~~aL~~aL~~g~i~gaalDV~  299 (342)
                      ++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-++   ..+.+.++. .-...++..|
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            9999999999987777766656667778999877 78887554   556666543 3334566666

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.79  E-value=8.7e-08  Score=93.25  Aligned_cols=122  Identities=18%  Similarity=0.219  Sum_probs=83.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .-.||+|||+ |.||+++|+.|.+.+|.+|++||+...                         ...++++.+++||+|++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVil   57 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLIF   57 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEEE
Confidence            4568999999 999999999984346999999998421                         12467888999999999


Q ss_pred             cCCCCcccccccCH--hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC---CCCccCCCceEE
Q 019328          243 HPVLDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIV  317 (342)
Q Consensus       243 ~lplt~~t~~li~~--~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvi~  317 (342)
                      |+|.. .+..++.+  .....+|+++++++++.-.    ..+.+++....     .++...-|..   .+.+++-.++++
T Consensus        58 avPv~-~~~~~l~~l~~~~~~l~~~~iVtDVgSvK----~~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~il  127 (370)
T PRK08818         58 SAPIR-HTAALIEEYVALAGGRAAGQLWLDVTSIK----QAPVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVV  127 (370)
T ss_pred             eCCHH-HHHHHHHHHhhhhcCCCCCeEEEECCCCc----HHHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEE
Confidence            99943 34444422  1223489999999998766    22333332211     1233444532   246777788999


Q ss_pred             cCC
Q 019328          318 VPH  320 (342)
Q Consensus       318 TPH  320 (342)
                      ||.
T Consensus       128 tp~  130 (370)
T PRK08818        128 CEA  130 (370)
T ss_pred             eCC
Confidence            997

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.77  E-value=1.6e-08  Score=96.27  Aligned_cols=84  Identities=24%  Similarity=0.316  Sum_probs=67.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+++|||||+|.||+.+|++| ...|.+|.+|+|+..                           .++++++++||+|+++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            457899999999999999998 578999999998632                           3678889999999999


Q ss_pred             CCCCcccccccCHhHHc-cCCCCcEEEecCCCccC
Q 019328          244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGPVI  277 (342)
Q Consensus       244 lplt~~t~~li~~~~l~-~mk~gailIN~sRG~~v  277 (342)
                      +|. +..+.++.. ... .+++++++|++++|-..
T Consensus        55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi~~   87 (308)
T PRK14619         55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGLDP   87 (308)
T ss_pred             CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCcccC
Confidence            996 467776633 222 47899999999885443

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.77  E-value=6.7e-08  Score=96.04  Aligned_cols=148  Identities=14%  Similarity=0.087  Sum_probs=92.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCC---CccccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+|||||+|.||..+|..++ . |.+|++||+++.+. +.+..+...+.+ .+..   ..+....++..+.+++||++++
T Consensus         7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l~~G~~~~~e-~~~~~l~~~g~l~~t~~~~~~~~advvii   82 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LELKNGVDVNLE-TTEEELREARYLKFTSEIEKIKECNFYII   82 (425)
T ss_pred             CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHHHCcCCCCCC-CCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence            68999999999999999974 3 68999999997652 222211000000 0000   0001112333456899999999


Q ss_pred             cCCCCc------cccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHH-Hc--CCccEE-EeecCCCCCCCC----
Q 019328          243 HPVLDK------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRV-GLDVFEDEPYMK----  306 (342)
Q Consensus       243 ~lplt~------~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL-~~--g~i~ga-alDV~~~EP~~~----  306 (342)
                      |+|...      +...++  .+...+.+++|.++|+.|+-.+--.+.+++.+ ++  |...+- -.=+|.+||...    
T Consensus        83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~  162 (425)
T PRK15182         83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK  162 (425)
T ss_pred             EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence            999652      334444  24566789999999999999998888765554 33  221111 111567898743    


Q ss_pred             CCccCCCceEE
Q 019328          307 PGLSEMKNAIV  317 (342)
Q Consensus       307 ~~L~~~~nvi~  317 (342)
                      ..+.+.|+++.
T Consensus       163 ~~~~~~~riv~  173 (425)
T PRK15182        163 HRLTNIKKITS  173 (425)
T ss_pred             ccccCCCeEEE
Confidence            35777787765

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.76  E-value=3.8e-08  Score=93.28  Aligned_cols=104  Identities=30%  Similarity=0.410  Sum_probs=87.1

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      -+.||++-|.|||-.|+.+|+++ +++|++|++..-.|-...++..++|               ....+++....+|+++
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi  269 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV  269 (420)
T ss_pred             eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence            58999999999999999999997 8999999999887766665544433               3467999999999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHH
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~a  285 (342)
                      .+.-    ++++|..+.|..||+|+++-|.+.=.+ ||.+.|.+-
T Consensus       270 T~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~  310 (420)
T COG0499         270 TATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEEL  310 (420)
T ss_pred             EccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHHh
Confidence            8854    688999999999999999999997665 677776643

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.75  E-value=2.7e-08  Score=77.97  Aligned_cols=92  Identities=26%  Similarity=0.361  Sum_probs=63.2

Q ss_pred             EEEEEccChHHHHHHHHHHhcCC---cEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ||||||+|+||..+++.+ ...|   .+|+ +++|++++. .++.+.++          ... ...+..+++++||+|++
T Consensus         1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~~----------~~~-~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEYG----------VQA-TADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHCT----------TEE-ESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhhc----------ccc-ccCChHHhhccCCEEEE
Confidence            699999999999999997 5778   8999 558987653 22222221          111 12378999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      ++|  |+...-+-.+. ....++.++|++.-|
T Consensus        68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence            999  54443344444 666789999988654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.75  E-value=3.7e-07  Score=85.58  Aligned_cols=171  Identities=16%  Similarity=0.186  Sum_probs=109.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++++.+.+.     +..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~  124 (285)
T PRK14189         55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KD-------VDGFHV  124 (285)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCCh
Confidence            34556788887655443 356777776553     24678998754  345543 33333222  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChH-HHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~I-G~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||.|.+ |+.+|
T Consensus       125 ~---n~g~l~~~~~~-~~PcTp~aii~lL----~~---------------------~~i~l~Gk~vvViGrs~iVGkPla  175 (285)
T PRK14189        125 A---NAGALMTGQPL-FRPCTPYGVMKML----ES---------------------IGIPLRGAHAVVIGRSNIVGKPMA  175 (285)
T ss_pred             h---hhhHhhCCCCC-CcCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence            0   11111112222 3445555544333    11                     135899999999999999 99999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .+| ...|+.|..+..+                            ..++.+.+++||+|+.+++    +.++|+.   +.
T Consensus       176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~  219 (285)
T PRK14189        176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM  219 (285)
T ss_pred             HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence            998 6899999886532                            1368899999999999999    4578887   55


Q ss_pred             CCCCcEEEecCCCcc
Q 019328          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~gailIN~sRG~~  276 (342)
                      +|+|+++||+|.-.+
T Consensus       220 ik~gavVIDVGin~~  234 (285)
T PRK14189        220 VKPGATVIDVGMNRD  234 (285)
T ss_pred             cCCCCEEEEcccccc
Confidence            789999999996553

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.75  E-value=7.4e-08  Score=93.78  Aligned_cols=148  Identities=16%  Similarity=0.095  Sum_probs=89.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+++|+.| +..|.+|.+|++++.........+          .........++++++++||+|++|+|
T Consensus         1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~a~~----------~~~~~~~~~~~~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLARALG----------FGVIDELAADLQRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHHHhc----------CCCCcccccCHHHHhcCCCEEEEeCC
Confidence            4799999999999999997 677877777776654321111000          01111123578889999999999999


Q ss_pred             CCcccccccCHhHHc-cCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----------CCccCCCc
Q 019328          246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN  314 (342)
Q Consensus       246 lt~~t~~li~~~~l~-~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----------~~L~~~~n  314 (342)
                      . ..+..++. +... .+++++++++++.-..--.+++.+.+.. ...  .++.   -|.+.          ..|+.-..
T Consensus        70 ~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~---HPMaG~e~sG~~aa~~~lf~g~~  141 (359)
T PRK06545         70 V-DATAALLA-ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGG---HPMAGSHKSGVAAARADLFENAP  141 (359)
T ss_pred             H-HHHHHHHH-HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEee---CCcCcCchhhHHHhcHHHHCCCc
Confidence            5 34555553 3333 4889999999988764333333333221 111  2222   24321          24677777


Q ss_pred             eEEcCCCCCCcHHHHHHHH
Q 019328          315 AIVVPHIASASKWTREGMA  333 (342)
Q Consensus       315 vi~TPHia~~t~~~~~~~~  333 (342)
                      .++||+-.. +.+..+.+.
T Consensus       142 ~il~~~~~~-~~~~~~~v~  159 (359)
T PRK06545        142 WVLTPDDHT-DPDAVAELK  159 (359)
T ss_pred             EEEecCCCC-CHHHHHHHH
Confidence            899997543 444444433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.73  E-value=9.7e-08  Score=94.71  Aligned_cols=110  Identities=23%  Similarity=0.223  Sum_probs=76.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH------------
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------  233 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------  233 (342)
                      ++|+|||+|.||..+|..|+ ..|.+|++||+++.... ....         +..+.   ....++++            
T Consensus         4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~~~~v~-~l~~---------g~~~~---~e~~l~~~l~~~~~~g~l~~   69 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDINQHAVD-TINR---------GEIHI---VEPDLDMVVKTAVEGGYLRA   69 (415)
T ss_pred             cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCCHHHHH-HHHC---------CCCCc---CCCCHHHHHHHHhhcCceee
Confidence            68999999999999999984 67999999999876432 2110         11110   11233333            


Q ss_pred             ---hhcCCEEEEcCCCC------ccccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       234 ---l~~sDiV~l~lplt------~~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                         ++.||+|++|+|..      ++...+.  -+.....+++|+++|+.|.-.+--.+.+...+.+.
T Consensus        70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence               34799999999954      2222332  24566778999999999998888888888777653

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.73  E-value=1.4e-07  Score=88.59  Aligned_cols=149  Identities=23%  Similarity=0.221  Sum_probs=92.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcE--EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHhhcCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMN--LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~--V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~sDiV~  241 (342)
                      -++|+|+|+|.||+++|+.+ +.-|..  |+++|++......+            ...+.......+. .+.+..||+|+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence            46899999999999999997 566665  46666665432221            1112222222233 66778899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----CCccCCCceEE
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PGLSEMKNAIV  317 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----~~L~~~~nvi~  317 (342)
                      +++|-. .|..++ ++....+|+|+++++++.-.----+++.+.+.++     . .+...-|...    .+++.-..+|+
T Consensus        70 vavPi~-~~~~~l-~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~-----~-~~vg~HPM~G~~~~~~lf~~~~~vl  141 (279)
T COG0287          70 VAVPIE-ATEEVL-KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGD-----V-RFVGGHPMFGPEADAGLFENAVVVL  141 (279)
T ss_pred             EeccHH-HHHHHH-HHhcccCCCCCEEEecccccHHHHHHHHHhccCC-----C-eeEecCCCCCCcccccccCCCEEEE
Confidence            999943 344433 4445589999999999886643333444433221     1 3334456433    37888888999


Q ss_pred             cCCCCCCcHHHHHHHHHH
Q 019328          318 VPHIASASKWTREGMATL  335 (342)
Q Consensus       318 TPHia~~t~~~~~~~~~~  335 (342)
                      ||.-... .+...++.+.
T Consensus       142 tp~~~~~-~~~~~~~~~~  158 (279)
T COG0287         142 TPSEGTE-KEWVEEVKRL  158 (279)
T ss_pred             cCCCCCC-HHHHHHHHHH
Confidence            9975443 4444444443

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.72  E-value=5.6e-08  Score=94.98  Aligned_cols=103  Identities=18%  Similarity=0.358  Sum_probs=75.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+.++++.|+|.|.+|+.+++.+ +++|++|.++|+++... +.....++...      ........++.+.++++|+|+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~g~~v------~~~~~~~~~l~~~l~~aDvVI  235 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEFGGRI------HTRYSNAYEIEDAVKRADLLI  235 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhcCcee------EeccCCHHHHHHHHccCCEEE
Confidence            46788999999999999999996 79999999999986532 21111111100      000111235778889999999


Q ss_pred             EcCCCC-cccccccCHhHHccCCCCcEEEecC
Q 019328          242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       242 l~lplt-~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .+++.+ ..+..+++++.++.||+++++||++
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            998653 3356789999999999999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02712 arogenate dehydrogenase

Probab=98.72  E-value=3.7e-08  Score=102.86  Aligned_cols=97  Identities=14%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV  240 (342)
                      .-+-++|||||+|.||+.+|+.| +.+|.+|++||++.....   ...+            +.....++++++ .+||+|
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~---A~~~------------Gv~~~~d~~e~~~~~aDvV  112 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLA---ARSL------------GVSFFLDPHDLCERHPDVI  112 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH---HHHc------------CCEEeCCHHHHhhcCCCEE
Confidence            44557899999999999999997 688999999999743211   1111            112245788866 569999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ++|+|. ..+..++..-.+..|++|++++|++.-.
T Consensus       113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK  146 (667)
T PLN02712        113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK  146 (667)
T ss_pred             EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence            999994 4677777665456799999999997544

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.70  E-value=1.6e-08  Score=99.32  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=67.2

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC------hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (342)
                      ..|+||||+|||+|.+|+.-|..| +-.|.+|.+--|.      .+.....         ..     .++ ...+++|++
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~kA---------~~-----dGF-~v~~~~Ea~   95 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRKA---------TE-----NGF-KVGTYEELI   95 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHHH---------Hh-----cCC-ccCCHHHHH
Confidence            569999999999999999555554 4555555421111      1111000         00     112 236899999


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      ++||+|++.+|++ + ++.+.++.+..||+|+.|. .|.|=-|
T Consensus        96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGFni  135 (487)
T PRK05225         96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGFNI  135 (487)
T ss_pred             HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCcee
Confidence            9999999999988 3 7788899999999999886 4555433

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.68  E-value=1.9e-07  Score=91.42  Aligned_cols=81  Identities=16%  Similarity=0.276  Sum_probs=64.5

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++||||| +|.||+++|+.| +..|..|.+||++..                           .+.++++++||+|++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~~~---------------------------~~~~~~~~~aDlVil  148 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQDDW---------------------------DRAEDILADAGMVIV  148 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCCcc---------------------------hhHHHHHhcCCEEEE
Confidence            568999999 999999999998 677999999997421                           246678899999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |+|... +..++ ++... +++|+++++++.-.
T Consensus       149 avP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK  178 (374)
T PRK11199        149 SVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVK  178 (374)
T ss_pred             eCcHHH-HHHHH-HHHhC-CCCCcEEEECCCcc
Confidence            999654 45544 33444 89999999997755

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.68  E-value=5.2e-07  Score=85.08  Aligned_cols=157  Identities=13%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh----hhhhccCCCC--------CccccccCCHHHH
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY----GQFLKANGEQ--------PVTWKRASSMDEV  233 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~l~el  233 (342)
                      ++|+|||.|.||..+|..++ ..|.+|+.||++.+..... .+..    ..........        ........++++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKA-KERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHH-HHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            58999999999999999974 5689999999987532111 1000    0000000000        0011234688899


Q ss_pred             hhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC
Q 019328          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (342)
Q Consensus       234 l~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~  313 (342)
                      ++.||+|+.++|...+.+.-+-++..+.++++++|+..+.+  +....+.+.++... .-.++-.       .+|.+..|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~  151 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNN  151 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCC
Confidence            99999999999976666666556666778999988543322  34456666665322 2233221       23456778


Q ss_pred             ceEEcCCCCCCcHHHHHHHHHH
Q 019328          314 NAIVVPHIASASKWTREGMATL  335 (342)
Q Consensus       314 nvi~TPHia~~t~~~~~~~~~~  335 (342)
                      .|.++||-. .+.++.+.+...
T Consensus       152 lvevv~~~~-t~~~~~~~~~~~  172 (287)
T PRK08293        152 TAEIMGHPG-TDPEVFDTVVAF  172 (287)
T ss_pred             eEEEeCCCC-CCHHHHHHHHHH
Confidence            888888754 345555554443

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.67  E-value=2.7e-07  Score=82.58  Aligned_cols=111  Identities=20%  Similarity=0.318  Sum_probs=78.8

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCC
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EAD  238 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD  238 (342)
                      +.+++||+++|+|+|+||+.+|+.| ..+|++|+++|++.... ..+.+.++            .. ..+.++++. +||
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~g------------~~-~v~~~~l~~~~~D   87 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELFG------------AT-VVAPEEIYSVDAD   87 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHcC------------CE-EEcchhhccccCC
Confidence            3579999999999999999999998 68999999999986532 22211111            11 123455554 799


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++.|..     .++|+++.++.|+. .+++.-+-+.+-| ..-.+.|++..+.
T Consensus        88 v~vp~A~-----~~~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          88 VFAPCAL-----GGVINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             EEEeccc-----ccccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            9986655     36889999999974 4788888887766 4455666666543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.66  E-value=5.2e-08  Score=83.32  Aligned_cols=94  Identities=27%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHH-HHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      |+||+|+|||||..|+.-|..| +..|.+|++-.+..++.. .+..+              ++ ...+.+|++++||+|+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~~~--------------Gf-~v~~~~eAv~~aDvV~   65 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEKAKAD--------------GF-EVMSVAEAVKKADVVM   65 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHHHT--------------T--ECCEHHHHHHC-SEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHHHC--------------CC-eeccHHHHHhhCCEEE
Confidence            6799999999999999999998 789999998776654221 11111              12 2468999999999999


Q ss_pred             EcCCCCccccc-ccCHhHHccCCCCcEEEecCCCc
Q 019328          242 LHPVLDKTTYH-LINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       242 l~lplt~~t~~-li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +.+|  ++... ++.++....||+|+.|+ .+.|-
T Consensus        66 ~L~P--D~~q~~vy~~~I~p~l~~G~~L~-fahGf   97 (165)
T PF07991_consen   66 LLLP--DEVQPEVYEEEIAPNLKPGATLV-FAHGF   97 (165)
T ss_dssp             E-S---HHHHHHHHHHHHHHHS-TT-EEE-ESSSH
T ss_pred             EeCC--hHHHHHHHHHHHHhhCCCCCEEE-eCCcc
Confidence            9999  44444 44577778999999877 44443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.64  E-value=3.9e-07  Score=84.73  Aligned_cols=104  Identities=30%  Similarity=0.367  Sum_probs=73.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc----EEEEE-cCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+|||||+|+||..+++.|. .-|.    +|++| +|++... +.+. .            .+.....+..+++++||+|
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~~~-~------------~g~~~~~~~~e~~~~aDvV   65 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DVFQ-S------------LGVKTAASNTEVVKSSDVI   65 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HHHH-H------------cCCEEeCChHHHHhcCCEE
Confidence            37999999999999999984 5565    88888 8876542 2211 1            1122345788889999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      ++|+| ....+.++ .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        66 il~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         66 ILAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             EEEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            99997 45566655 3455667899999988665  466666665543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.63  E-value=1.2e-07  Score=89.51  Aligned_cols=169  Identities=19%  Similarity=0.194  Sum_probs=106.1

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccChh
Q 019328           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (342)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~~  103 (342)
                      ..++.|.+.+....++ ..+++++.+.+.     +.+|++++..+  ..+++. +++..+-.  |=|    -|+....+-
T Consensus        57 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDV----DGl~~~N~g  129 (301)
T PRK14194         57 RAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDV----DGFHSENVG  129 (301)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hcc----CccChhhhh
Confidence            4456788776554433 357777776653     24689998754  345543 33333221  211    111111111


Q ss_pred             HHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHHH
Q 019328          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (342)
Q Consensus       104 ~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA~  182 (342)
                      ..      ..+.++ ....++.-++.++-                         ..+.++.||+|+|||.| .||+.+|.
T Consensus       130 ~l------~~~~~~-~~PcTp~aii~lL~-------------------------~~~i~l~Gk~V~vIG~s~ivG~PmA~  177 (301)
T PRK14194        130 GL------SQGRDV-LTPCTPSGCLRLLE-------------------------DTCGDLTGKHAVVIGRSNIVGKPMAA  177 (301)
T ss_pred             HH------hcCCCC-CCCCcHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCccHHHHHH
Confidence            11      111222 34455555554431                         11358999999999996 99999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccC
Q 019328          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (342)
Q Consensus       183 ~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~m  262 (342)
                      +| ..-|+.|.+|+++.                            .++.++.++||+|+++++..    +++....   +
T Consensus       178 ~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---i  221 (301)
T PRK14194        178 LL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---L  221 (301)
T ss_pred             HH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---c
Confidence            98 57799999997642                            36888999999999999954    3455544   7


Q ss_pred             CCCcEEEecCCCc
Q 019328          263 KKEAILVNCSRGP  275 (342)
Q Consensus       263 k~gailIN~sRG~  275 (342)
                      |+|+++||+|--.
T Consensus       222 k~GaiVIDvgin~  234 (301)
T PRK14194        222 KPGAVVIDVGINR  234 (301)
T ss_pred             cCCcEEEEecccc
Confidence            9999999998554

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.61  E-value=1.6e-06  Score=81.43  Aligned_cols=170  Identities=16%  Similarity=0.251  Sum_probs=107.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+..     .+|++++..+  ..+++. +++..+-.  |=|    -|+....+
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDV----DGl~~~n~  127 (286)
T PRK14175         55 KAAEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDV----DGFHPINI  127 (286)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCc----ccCCccch
Confidence            34556788877655443 3467777765531     3679998754  335543 33333221  211    11111111


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                            |-...+.++ ....++.-++.++-                         ..+.++.||++.|||.|. +|+.+|
T Consensus       128 ------g~l~~~~~~-~~PcTp~ai~~ll~-------------------------~~~i~l~Gk~vvVIGrs~~VG~pla  175 (286)
T PRK14175        128 ------GKLYIDEQT-FVPCTPLGIMEILK-------------------------HADIDLEGKNAVVIGRSHIVGQPVS  175 (286)
T ss_pred             ------HhHhcCCCC-CCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCchhHHHHH
Confidence                  111112232 34455555544431                         013479999999999999 999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ...|++|..++++.                            .++.+.+++||+|+.+++-    .++|.++.   
T Consensus       176 ~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~---  219 (286)
T PRK14175        176 KLL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV---  219 (286)
T ss_pred             HHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence            998 68899999887531                            3678889999999999984    44687764   


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                      +|+|+++||+|--.
T Consensus       220 vk~gavVIDvGi~~  233 (286)
T PRK14175        220 VKEGAVIIDVGNTP  233 (286)
T ss_pred             cCCCcEEEEcCCCc
Confidence            58999999998644

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.61  E-value=2.8e-07  Score=86.55  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=73.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      +.+|||||+|+||+.+|+.|. .-|    .+|++++|+..+..+.+...++            .....+..+++.+||+|
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~g------------~~~~~~~~e~~~~aDvV   69 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKYG------------VKGTHNKKELLTDANIL   69 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhcC------------ceEeCCHHHHHhcCCEE
Confidence            468999999999999999974 444    6899999976433333222111            12235778889999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      ++++|. .+....+ .+....++++.++|++.-|-  ..+.+.+.+..
T Consensus        70 ilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~  113 (279)
T PRK07679         70 FLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQK  113 (279)
T ss_pred             EEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC
Confidence            999993 3344444 44455678899999986553  55666666543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.60  E-value=1.1e-05  Score=81.48  Aligned_cols=234  Identities=21%  Similarity=0.204  Sum_probs=126.9

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecC--CCCCCCHHHHHHH---h-----cCCccEEEecCCcCccHHHHHHhh
Q 019328           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQ--KKTILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALS   83 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~---~-----~~~~d~~i~~~~~~~~~~~~~~~~   83 (342)
                      +..||-+|.     +..+.|.+.|+++.+...  ....++.++..+.   +     -+.+|+|+- ...+ +++.++.++
T Consensus        11 ~E~RVAltP-----~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlk-V~~P-~~~e~~~l~   83 (511)
T TIGR00561        11 NECRVAATP-----KTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILK-VNAP-SDAEIAELP   83 (511)
T ss_pred             CCeeeccCH-----HHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEE-eCCC-CHHHHHhcC
Confidence            455554333     235677788888765433  1223455554431   0     013576652 1222 344466665


Q ss_pred             ccCCceEEEcccccCccChhHHHhCCceEEcCCCCC--c--------hhHHHHHHHHHHHHHhchHHHHHHHH---cCCC
Q 019328           84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMR---AGLY  150 (342)
Q Consensus        84 ~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~--~--------~~vAE~al~l~L~~~R~~~~~~~~~~---~g~w  150 (342)
                      . |--+|+...-..|.=-++++.++||.+..---..  +        .++|+.+=      .|-.....+.+-   .|.-
T Consensus        84 ~-g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~lgr~~~g~~  156 (511)
T TIGR00561        84 A-GKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHEFGRFFTGQI  156 (511)
T ss_pred             C-CCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHHhhhhcCCce
Confidence            5 2234444333334334577788998877622111  1        22333322      222222211111   1110


Q ss_pred             CCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-----ccCCCCCcccc
Q 019328          151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWK  225 (342)
Q Consensus       151 ~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  225 (342)
                            -..| .+.+.++.|+|.|.+|...++.+ +++|++|.++|++......  ...++...     ...+...-++.
T Consensus       157 ------taag-~vp~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rle~--a~~lGa~~v~v~~~e~g~~~~gYa  226 (511)
T TIGR00561       157 ------TAAG-KVPPAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQ--VQSMGAEFLELDFKEEGGSGDGYA  226 (511)
T ss_pred             ------ecCC-CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCCeEEeccccccccccccce
Confidence                  0112 45679999999999999999986 7999999999998764221  12222111     00011111111


Q ss_pred             ccCC----------HHHHhhcCCEEEEcC--CCCcccccccCHhHHccCCCCcEEEecC
Q 019328          226 RASS----------MDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       226 ~~~~----------l~ell~~sDiV~l~l--plt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      ...+          +.+.++++|+|+.++  |..+ .-.++.++.++.||||+++||++
T Consensus       227 ~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       227 KVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             eecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence            1112          456678899998886  4322 34789999999999999999986

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.60  E-value=2e-06  Score=80.55  Aligned_cols=170  Identities=18%  Similarity=0.234  Sum_probs=107.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+++.+..++ ..+++++.+.+.     +..|++++..+  ..+++.. ++..+-.  |=       +|.+.-
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KD-------VDGl~~  124 (284)
T PRK14179         55 RSALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KD-------VDGFHP  124 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCH
Confidence            44566788887655543 356777776553     14689998754  3444433 3332221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc-ChHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~-G~IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++-                         ..+.++.||+++|||. |.+|+.+|
T Consensus       125 ~---N~g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~v~vIG~S~ivG~Pla  175 (284)
T PRK14179        125 M---NTGHLWSGRPV-MIPCTPAGIMEMFR-------------------------EYNVELEGKHAVVIGRSNIVGKPMA  175 (284)
T ss_pred             h---hHHHHhCCCCC-CcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcCcHHHH
Confidence            0   11111122333 35566666554441                         1235899999999999 99999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..|...                            ..++.+.+++||+|+.+++...    ++....   
T Consensus       176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~~~----~v~~~~---  219 (284)
T PRK14179        176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGRGH----FVTKEF---  219 (284)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCccc----cCCHHH---
Confidence            998 5679999988321                            1368899999999999999543    455544   


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                      +|+|+++||+|--.
T Consensus       220 ik~GavVIDvgin~  233 (284)
T PRK14179        220 VKEGAVVIDVGMNR  233 (284)
T ss_pred             ccCCcEEEEeccee
Confidence            79999999998554

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.58  E-value=6.6e-07  Score=84.13  Aligned_cols=118  Identities=22%  Similarity=0.306  Sum_probs=77.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--Hh-hhhhhhccCCCCCc--------cccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQPV--------TWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~l~ell  234 (342)
                      ++|+|||.|.||..+|..++ ..|.+|++||+++.......  .. .+.. +...+....        ......+.++ +
T Consensus         4 ~kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~l~~-~~~~g~~~~~~~~~~~~~l~~~~~~~~-~   80 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKSLDR-LVKKGKMTEADKEAALARITGTTDLDD-L   80 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence            57999999999999999984 66999999999876432100  00 0000 011110000        1112345554 7


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      ++||+|+.|+|-..+.+.-+-++..+.++++++++....|  +....|.+.+..
T Consensus        81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            8999999999977777766666677778999998544444  566688888753

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=1.8e-06  Score=81.50  Aligned_cols=154  Identities=23%  Similarity=0.250  Sum_probs=92.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---ccCCCCC--------ccccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~l~ell  234 (342)
                      ++|+|||.|.||..+|..++ ..|.+|++||++++.... ........+   ...+...        .......+++ .+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   81 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLEA-GLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL   81 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence            68999999999999999984 678999999998764321 111000000   0001000        0011234665 47


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~  313 (342)
                      ++||+|+.++|..++.+..+-++....++++++|+ |+|.-.   ...+.+.+.. +-...++-.++  |.+-.++    
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~--p~~~~~~----  151 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN--PVPVMKL----  151 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC--CcccCce----
Confidence            89999999999877766665567777889999998 666544   3467777643 22334455555  3222222    


Q ss_pred             ceEEcCCCCCCcHHHHHHHHH
Q 019328          314 NAIVVPHIASASKWTREGMAT  334 (342)
Q Consensus       314 nvi~TPHia~~t~~~~~~~~~  334 (342)
                       +-+.||.+ .+.+..+....
T Consensus       152 -vei~~g~~-t~~~~~~~~~~  170 (292)
T PRK07530        152 -VELIRGIA-TDEATFEAAKE  170 (292)
T ss_pred             -EEEeCCCC-CCHHHHHHHHH
Confidence             34566643 34555544443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.53  E-value=4.5e-07  Score=84.92  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=77.9

Q ss_pred             CCEEEEEccChHHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..+|||||+|.||+.+++.+.+. .++++. +||+++... +.+.+.++          . ...+.+++++++++|+|++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~g----------~-~~~~~~~eell~~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGLR----------R-PPPVVPLDQLATHADIVVE   73 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhcC----------C-CcccCCHHHHhcCCCEEEE
Confidence            47899999999999999997443 578876 678876542 22222111          0 1234689999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      |+|..  +..-+   ..+.++.|.-++..++|.+.+.++|.++.+++..
T Consensus        74 ~tp~~--~h~e~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~  117 (271)
T PRK13302         74 AAPAS--VLRAI---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG  117 (271)
T ss_pred             CCCcH--HHHHH---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence            99943  23222   2334566777777899988889999999888654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.53  E-value=1.1e-06  Score=74.64  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=77.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.+++++|+|.|.||+.+++.+ ...| .+|.++|++.... +.+.+.++.    ..   . .....+++++++++|+|
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~~~----~~---~-~~~~~~~~~~~~~~Dvv   85 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERFGE----LG---I-AIAYLDLEELLAEADLI   85 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHhh----cc---c-ceeecchhhccccCCEE
Confidence            46789999999999999999998 4564 7899999987543 222222110    00   0 01235677888999999


Q ss_pred             EEcCCCCcc-ccc-ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          241 SLHPVLDKT-TYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       241 ~l~lplt~~-t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      ++++|.... ... .+...   .++++.+++|++..+.. + .|.+.+++..
T Consensus        86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g  132 (155)
T cd01065          86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALG  132 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence            999996653 122 23332   36899999999876543 3 7777777654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.51  E-value=1.2e-06  Score=84.23  Aligned_cols=115  Identities=20%  Similarity=0.238  Sum_probs=76.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhc-cCC-CCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANG-EQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..+|+|||.|.||..+|.+|+ ..|.+|.+|+|+++.. +..... ..... ..+ ..........+++++++.+|+|++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~-~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~   80 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAE-RENREYLPGVALPAELYPTADPEEALAGADFAVV   80 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHh-CcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence            358999999999999999984 6799999999986532 111110 00000 000 000002234578888999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCC-ccCC--HHHHHHHHHc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ  288 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG-~~vd--~~aL~~aL~~  288 (342)
                      ++|... +     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        81 ~v~~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         81 AVPSKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             ECchHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            999552 2     5667889999999999998 4333  5566666654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.49  E-value=1.1e-06  Score=82.97  Aligned_cols=130  Identities=18%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh---hccCCCCC--------ccccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~l~ell  234 (342)
                      ++|||||.|.||..+|..++ ..|.+|+.||++++..... .+.+...   ....+...        .......++ +.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~   82 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAG-RNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDF   82 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHH-HHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence            48999999999999999975 6799999999998753221 1000000   11111110        001124577 457


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccC-CCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~m-k~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~  301 (342)
                      +.||+|+-++|.+.+.+.-+-.+.-+.+ +++++|++.+.+-.+  ..+..+++. +=.-.++..|.+
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~P  147 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFNP  147 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCCC
Confidence            9999999999999998888776555555 899999887666544  445555443 223445566654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.48  E-value=7.2e-07  Score=77.64  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             cccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .++.||++.|||.|.+ |..+|+.| ...|++|+..+|+.                            .++.+.+.+||+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi   90 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI   90 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence            3799999999999996 88899997 68899999888752                            256778999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      |+.+.+..    ++|.++.   ++++.++||++.-.-+|
T Consensus        91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080          91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence            99998832    3688875   57899999999988877

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.47  E-value=2.1e-06  Score=85.07  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhccCCCCCccccccCCHHHHhhcCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +|||||+|.||..+|..|+ ..|.+|++||+++.... .+..+..        ..+......+ ......++++++++||
T Consensus         2 kI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v~-~l~~g~~~~~e~~l~~~~~~~~~~g-~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKVD-KLNKGKSPIYEPGLDELLAKALAAG-RLRATTDYEDAIRDAD   78 (411)
T ss_pred             EEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHHH-HhhcCCCCCCCCCHHHHHHHhhhcC-CeEEECCHHHHHhhCC
Confidence            7999999999999999984 67999999999876421 1111000        0000000000 0123457888899999


Q ss_pred             EEEEcCCCCccc------cccc--CHhHHccCCCCcEEEecCCCccCCHHHHHH-HHHcC-CccEEEeec---CCCCCCC
Q 019328          239 VISLHPVLDKTT------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVE-HLKQN-PMFRVGLDV---FEDEPYM  305 (342)
Q Consensus       239 iV~l~lplt~~t------~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~-aL~~g-~i~gaalDV---~~~EP~~  305 (342)
                      +|++|+|.....      ..+.  -......+++|.++|+.|.-.+=-.+.+.+ .+++. .+. .+.|.   +.+|...
T Consensus        79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~  157 (411)
T TIGR03026        79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLR  157 (411)
T ss_pred             EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCC
Confidence            999999954321      1122  134566789999999999766666667764 44441 111 12332   2344432


Q ss_pred             C----CCccCCCceEEc
Q 019328          306 K----PGLSEMKNAIVV  318 (342)
Q Consensus       306 ~----~~L~~~~nvi~T  318 (342)
                      .    ..++..+.+++.
T Consensus       158 ~G~~~~~~~~~~~iv~G  174 (411)
T TIGR03026       158 EGNAVHDLLNPDRIVGG  174 (411)
T ss_pred             CCChhhhhcCCCEEEEe
Confidence            2    235666677766

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.46  E-value=5.7e-07  Score=83.57  Aligned_cols=95  Identities=22%  Similarity=0.395  Sum_probs=78.2

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+.||.+.|.|||..|+..|+.| ++||++|++....|-..+.+-.++               .....++|+.++.|+++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG---------------~~V~tm~ea~~e~difV  274 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEG---------------YEVTTLEEAIREVDIFV  274 (434)
T ss_pred             eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhc---------------cEeeeHHHhhhcCCEEE
Confidence            47899999999999999999998 899999999876664444332222               23578999999999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      .+.-    .+++|..+.|.+||.++++.|++.-.+
T Consensus       275 TtTG----c~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  275 TTTG----CKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             EccC----CcchhhHHHHHhCcCCcEEeccccccc
Confidence            7754    678899999999999999999987654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.46  E-value=4.7e-06  Score=78.69  Aligned_cols=130  Identities=17%  Similarity=0.267  Sum_probs=81.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh----hhhhhhccCCCCC--------ccccccCCHH
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT----AYGQFLKANGEQP--------VTWKRASSMD  231 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~~----~~~~~~~~~~~~~--------~~~~~~~~l~  231 (342)
                      ++|+|||.|.||..+|..+ ...|.+|+.||+++......  ...    ....... .+...        .......++ 
T Consensus         4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~-~g~~~~~~~~~~~~~i~~~~~~-   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVE-KGKMSEDEAKAIMARIRTSTSY-   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHH-cCCCCHHHHHHHHhCcEeeCCH-
Confidence            6899999999999999997 46799999999987643211  000    0000000 01000        000112345 


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (342)
Q Consensus       232 ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~  301 (342)
                      +.+++||+|+.++|...+.+.-+-++.-+.++++++|++.+.|  +....+.+.+.. +-.-.++..|.+
T Consensus        81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P  147 (291)
T PRK06035         81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNP  147 (291)
T ss_pred             HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCC
Confidence            5679999999999976655555555555678999999877776  456777777753 223344444443

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.45  E-value=8.3e-07  Score=90.17  Aligned_cols=131  Identities=21%  Similarity=0.323  Sum_probs=87.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhccCCCCC--------ccccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (342)
                      ++|||||.|.||+.+|..++ ..|.+|+.||+++......  .. ..+.... ..+...        .......++++ +
T Consensus         8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~~~~~-~   84 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAKLV-EKGKLTAEQADAALARLRPVEALAD-L   84 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence            68999999999999999975 6699999999998653221  00 0010001 111000        00122457766 5


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEE-EecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gail-IN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  303 (342)
                      +.||+|+-++|.+.+.+..+-.+.-+.++++++| +|+|.-++   ..+.+++.. .=.-.++..|.+-|
T Consensus        85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~  150 (507)
T PRK08268         85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP  150 (507)
T ss_pred             CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence            6999999999999999988776666667899999 59988776   367776653 22345667776544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.44  E-value=7.4e-07  Score=83.52  Aligned_cols=104  Identities=20%  Similarity=0.281  Sum_probs=73.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++|||||+|+||+++++.|. .-|    .+|++|||+.... +...+.+            +.....+..+++.+||+|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~~~------------g~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASDKY------------GITITTNNNEVANSADILI   68 (272)
T ss_pred             CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHHhc------------CcEEeCCcHHHHhhCCEEE
Confidence            58999999999999999874 434    3799999987542 2221111            1122357788899999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                      +|+| ......++ ++....++++.++|++.-|-  +.+.|.+.+.
T Consensus        69 Lavk-P~~~~~vl-~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~  110 (272)
T PRK12491         69 LSIK-PDLYSSVI-NQIKDQIKNDVIVVTIAAGK--SIKSTENEFD  110 (272)
T ss_pred             EEeC-hHHHHHHH-HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence            9999 35555555 34445568899999998874  5566666664

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.44  E-value=1.5e-06  Score=88.12  Aligned_cols=132  Identities=19%  Similarity=0.279  Sum_probs=88.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH---HhhhhhhhccCCCCC--------ccccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (342)
                      ++|||||.|.||+.+|..++ ..|.+|..||+++.......   ...+.... ..+...        .......++++ +
T Consensus         6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~~~~~-l   82 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNSLV-TKGKLTAEECERTLKRLIPVTDLHA-L   82 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence            57999999999999999985 67999999999976532110   00011011 111100        00122457766 4


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~  304 (342)
                      +.||+|+-++|...+.+..+..+.-+.++++++|. |||.-++   ..+.+++.. .....++..|.+-|.
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv  149 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV  149 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence            69999999999988888887776667788898876 7766554   567777753 445677777776553

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.42  E-value=1e-06  Score=73.88  Aligned_cols=102  Identities=22%  Similarity=0.289  Sum_probs=72.0

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      +++|+++.|||.|.+|+.++..| ...|++ |+.++|+.++. +++...+       +..........++.+.+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~ra-~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPERA-EALAEEF-------GGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHHH-HHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHHH-HHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence            79999999999999999999998 578986 99999987642 3332222       11112223356777889999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCc-EEEecCCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGP  275 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~ga-ilIN~sRG~  275 (342)
                      +.+.|....   .+.++.++..++.. ++++.+.-.
T Consensus        80 I~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   80 INATPSGMP---IITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             EE-SSTTST---SSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             EEecCCCCc---ccCHHHHHHHHhhhhceeccccCC
Confidence            999885433   77888887776543 777776543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.42  E-value=1e-06  Score=83.20  Aligned_cols=169  Identities=18%  Similarity=0.184  Sum_probs=105.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.|++++..+  ..+++. +++..+-.  |       -+|.+.-
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--K-------DVDGl~~  124 (296)
T PRK14188         55 KQTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--K-------DVDGLHV  124 (296)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--c-------ccccCCh
Confidence            34556788876554432 4577777766531     3679998754  344443 33333221  2       1222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc-cChHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG-~G~IG~~vA  181 (342)
                      ..   .|-...+.++ ....++.-++.++=    +                     .+.++.||+|+||| .|.+|+.+|
T Consensus       125 ~n---~g~l~~~~~~-~~PcTp~ai~~ll~----~---------------------~~i~~~Gk~V~viGrs~~mG~PmA  175 (296)
T PRK14188        125 VN---AGRLATGETA-LVPCTPLGCMMLLR----R---------------------VHGDLSGLNAVVIGRSNLVGKPMA  175 (296)
T ss_pred             hh---HHHHhCCCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEEcCCcchHHHHH
Confidence            10   0111112222 34555655554331    0                     12479999999999 999999999


Q ss_pred             HHHHhcCCcEEEEEc-CChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328          182 RMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~  260 (342)
                      ++| ..-|+.|.+|+ ++                             .++++++++||+|+++++...    ++.+..  
T Consensus       176 ~~L-~~~g~tVtv~~~rT-----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~--  219 (296)
T PRK14188        176 QLL-LAANATVTIAHSRT-----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW--  219 (296)
T ss_pred             HHH-HhCCCEEEEECCCC-----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe--
Confidence            998 46799999995 32                             257888999999999999544    444443  


Q ss_pred             cCCCCcEEEecCCCc
Q 019328          261 TMKKEAILVNCSRGP  275 (342)
Q Consensus       261 ~mk~gailIN~sRG~  275 (342)
                       +|+|+++||+|--.
T Consensus       220 -lk~GavVIDvGin~  233 (296)
T PRK14188        220 -IKPGATVIDVGINR  233 (296)
T ss_pred             -ecCCCEEEEcCCcc
Confidence             89999999998654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.41  E-value=2.3e-06  Score=81.53  Aligned_cols=124  Identities=13%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----hhhhhccCCCC-C--ccccccCCHHHHhhcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ-P--VTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~-~--~~~~~~~~l~ell~~sD  238 (342)
                      ++|||||.|.||..+|..+ ...|.+|++||++.+... .....    .+. ....... .  .......++++++++||
T Consensus         5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~aD   81 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGALE-RARGVIERALGV-YAPLGIASAGMGRIRMEAGLAAAVSGAD   81 (311)
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HHHHHHHHHHHH-hhhcccHHHHhhceEEeCCHHHHhccCC
Confidence            5899999999999999998 467899999999875421 11110    010 0000000 0  00112357888899999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc-CCccEE
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ-NPMFRV  294 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~ga  294 (342)
                      +|++++|...+.+.-+-.+.-..++++++++..+-|  +....+.+.+.. .++.|+
T Consensus        82 lVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig~  136 (311)
T PRK06130         82 LVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVGT  136 (311)
T ss_pred             EEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEE
Confidence            999999966543433333333456777777544334  345677777653 334443

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.41  E-value=9.2e-07  Score=82.87  Aligned_cols=100  Identities=18%  Similarity=0.318  Sum_probs=66.0

Q ss_pred             EEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +|||||+|.||+.+|+.|+ ..|  .+|++||+++.......  .       .+..    ....+++++.. ||+|++|+
T Consensus         2 ~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~~~~--~-------~g~~----~~~~~~~~~~~-aD~Vilav   66 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLKKAL--E-------LGLV----DEIVSFEELKK-CDVIFLAI   66 (275)
T ss_pred             EEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHHHHH--H-------CCCC----cccCCHHHHhc-CCEEEEeC
Confidence            7999999999999999974 445  58999999875422110  0       1110    11246677654 99999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      |.. .+...+ .+... +++++++++++.-    -..+.+++..
T Consensus        67 p~~-~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         67 PVD-AIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             cHH-HHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            943 334433 34555 8999999997552    3445555544

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.41  E-value=1.6e-06  Score=91.96  Aligned_cols=144  Identities=16%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|||||+|.||+.+|+.+ +..|  .+|++||++.......  ..+       +..   .....+++++++++|+|++|
T Consensus         4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~a--~~~-------g~~---~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLELA--VSL-------GVI---DRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHHH--HHC-------CCC---CcccCCHHHHhcCCCEEEEC
Confidence            6899999999999999997 5666  5899999987542211  111       111   01234688889999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC----------CCCccCCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK  313 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~~~~  313 (342)
                      +|.. .+..++ ++....++++.++++++.-...-.+.+.+.+...     ...+..+=|..          ++.|+.-.
T Consensus        71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~-----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~  143 (735)
T PRK14806         71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGEL-----PAGFVPGHPIAGSEKSGVHAANADLFRNH  143 (735)
T ss_pred             CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhcccc-----CCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence            9943 333333 3344557889999999875533344455444331     12333344421          13578888


Q ss_pred             ceEEcCCCCCCcHHHHH
Q 019328          314 NAIVVPHIASASKWTRE  330 (342)
Q Consensus       314 nvi~TPHia~~t~~~~~  330 (342)
                      ++++||+... +.+..+
T Consensus       144 ~~~~~~~~~~-~~~~~~  159 (735)
T PRK14806        144 KVILTPLAET-DPAALA  159 (735)
T ss_pred             eEEEECCCCC-CHHHHH
Confidence            8999997544 444433

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.39  E-value=2.2e-06  Score=80.49  Aligned_cols=107  Identities=18%  Similarity=0.292  Sum_probs=71.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+|||||+|.||+.+++.+. ..|    .+|++|+++...........+          . ......+..++++++|+|+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~----------~-~~~~~~~~~e~~~~aDvVi   69 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY----------P-TVELADNEAEIFTKCDHSF   69 (277)
T ss_pred             CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc----------C-CeEEeCCHHHHHhhCCEEE
Confidence            47999999999999999974 445    689999986543222211111          0 0111357788899999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      +|+| ......++ .+....++++..+|.+.-|  +..+.|.+.+..
T Consensus        70 lavp-p~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~  112 (277)
T PRK06928         70 ICVP-PLAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG  112 (277)
T ss_pred             EecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            9999 22233322 3333456788899998887  666788887643

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.37  E-value=1.5e-06  Score=82.82  Aligned_cols=107  Identities=16%  Similarity=0.208  Sum_probs=70.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc--CCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|.+|++++... +..... +.....  ......+.....+++++++.||+|++|
T Consensus         2 mkI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLA-RNGHDVTLWARDPEQA-AEINAD-RENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHc-CcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            47999999999999999984 6789999999986542 211110 000000  000000122345788899999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      +|. ..+..++ .+....+++++++|+++.|--.
T Consensus        79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence            995 4555554 3455567899999999866443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.36  E-value=2.8e-06  Score=83.51  Aligned_cols=141  Identities=13%  Similarity=0.205  Sum_probs=87.8

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCC------CCccccccCCHHHHhhcCCEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE------QPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~ell~~sDiV  240 (342)
                      +|||||+|.||..+|..++  .|.+|++||++..+. +...++.....+ .+.      .........+..++++.||+|
T Consensus         2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e-~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v   77 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVD-KEIQQFLQSDKIHFNATLDKNEAYRDADYV   77 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCC-cCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence            6999999999999997763  489999999987652 221111000000 000      011112223467788999999


Q ss_pred             EEcCCCCcccc-cccCH-------hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC----CC
Q 019328          241 SLHPVLDKTTY-HLINK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PG  308 (342)
Q Consensus       241 ~l~lplt~~t~-~li~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~----~~  308 (342)
                      ++|+|...+-+ ..++-       +.+..+++|.++|+.|+-.+=-.+.+.+.+.+..+      +|.+|...+    ..
T Consensus        78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d  151 (388)
T PRK15057         78 IIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYD  151 (388)
T ss_pred             EEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCccccc
Confidence            99999552211 11221       22334799999999999998888888888765322      246666533    24


Q ss_pred             ccCCCceEE
Q 019328          309 LSEMKNAIV  317 (342)
Q Consensus       309 L~~~~nvi~  317 (342)
                      ++..|.|++
T Consensus       152 ~~~p~rvv~  160 (388)
T PRK15057        152 NLHPSRIVI  160 (388)
T ss_pred             ccCCCEEEE
Confidence            666666654

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.35  E-value=4.7e-06  Score=84.54  Aligned_cols=118  Identities=18%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-------hhhhhccCCCCCcc-ccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-------YGQFLKANGEQPVT-WKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~l~ell~~s  237 (342)
                      ++|||||.|.||..+|..++ .-|.+|.+||+++..... ..+.       +. .+........+ .....++++++++|
T Consensus         5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~~g~i~~~~~~~ea~~~a   81 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERI-IGEVLANAERAYA-MLTDAPLPPEGRLTFCASLAEAVAGA   81 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHh-hhccchhhhhhceEeeCCHHHHhcCC
Confidence            58999999999999999985 669999999998765321 1000       00 00000000011 22356888999999


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      |+|+.++|...+.+..+-.+.-+.++++++| .++..++ ....+.+.+..
T Consensus        82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         82 DWIQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence            9999999987766765545555667888755 4444443 35577777654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.34  E-value=1e-05  Score=77.11  Aligned_cols=154  Identities=21%  Similarity=0.158  Sum_probs=86.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--Hh-hhhhhhccCCCCC--------ccccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (342)
                      ++|||||.|.||..+|..++ ..|.+|++||+++.......  .. .+.. +...+...        .......++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~~~~~~~~~i~~~~~~~~a~   80 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFA-RAGHEVRLWDADPAAAAAAPAYIAGRLED-LAAFDLLDGEAPDAVLARIRVTDSLADAV   80 (308)
T ss_pred             cEEEEECccHHHHHHHHHHH-HCCCeeEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence            47999999999999999984 67999999999875321110  00 0000 00111100        0012346888999


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCc
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~n  314 (342)
                      +.||+|+.++|...+.+..+-.+.-+..+++.++. .+.. ......+.+.+....  ....|-+-+ |.     .-.|=
T Consensus        81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts-~~~~~~la~~~~~~~--~~~~~hp~~-p~-----~~~~l  150 (308)
T PRK06129         81 ADADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS-ALLASAFTEHLAGRE--RCLVAHPIN-PP-----YLIPV  150 (308)
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC-CCCHHHHHHhcCCcc--cEEEEecCC-Cc-----ccCce
Confidence            99999999999765555444333333345555554 3333 344667888775432  223333332 21     11123


Q ss_pred             eEEcCCCCCCcHHHHHHH
Q 019328          315 AIVVPHIASASKWTREGM  332 (342)
Q Consensus       315 vi~TPHia~~t~~~~~~~  332 (342)
                      +.++||-++ +.+..+..
T Consensus       151 veiv~~~~t-~~~~~~~~  167 (308)
T PRK06129        151 VEVVPAPWT-APATLARA  167 (308)
T ss_pred             EEEeCCCCC-CHHHHHHH
Confidence            668887543 44454443

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.34  E-value=1.5e-05  Score=74.85  Aligned_cols=170  Identities=18%  Similarity=0.230  Sum_probs=107.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+..     ..|++++..+  ..+++.. ++..+-.  |=       +|.+.-
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~  123 (285)
T PRK14191         54 KACERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--KD-------VDGFHP  123 (285)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cc-------ccccCh
Confidence            34556788887655543 3467777665532     3689998754  3444433 3333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++=    +                     .+.++.||++.|||-| .+|+.+|
T Consensus       124 ~---n~g~l~~g~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvVvGrs~~VG~Pla  174 (285)
T PRK14191        124 L---NIGKLCSQLDG-FVPATPMGVMRLLK----H---------------------YHIEIKGKDVVIIGASNIVGKPLA  174 (285)
T ss_pred             h---hHHHHhcCCCC-CCCCcHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence            1   11111222232 34566666654441    1                     2358999999999999 9999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..+..+.                            .++.+.+++||+|+.+++    ..+++..+.+  
T Consensus       175 ~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG----~p~~i~~~~v--  219 (285)
T PRK14191        175 MLM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVG----KPDLIKASMV--  219 (285)
T ss_pred             HHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecC----CCCcCCHHHc--
Confidence            998 57899998874321                            257788999999999997    3457777766  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       220 -k~GavVIDvGi~~  232 (285)
T PRK14191        220 -KKGAVVVDIGINR  232 (285)
T ss_pred             -CCCcEEEEeeccc
Confidence             8999999998654

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.33  E-value=4.7e-07  Score=81.78  Aligned_cols=132  Identities=14%  Similarity=0.194  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHH-hcCCcEEEE-EcCChh
Q 019328          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQA  200 (342)
Q Consensus       123 vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~-~a~g~~V~~-~d~~~~  200 (342)
                      .++|.+..++...|++.            +|.         ..++++|+|+|.+|+.+++.+. ...|+++.+ +|+++.
T Consensus        63 ~~gy~v~~l~~~~~~~l------------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~  121 (213)
T PRK05472         63 GVGYNVEELLEFIEKIL------------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE  121 (213)
T ss_pred             CCCeeHHHHHHHHHHHh------------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence            35688999998888885            121         2358999999999999998531 357888775 676543


Q ss_pred             hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEEEcCCCCcc---cccccCHhHHccCCCCcEEEecCCCc
Q 019328          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~l~lplt~~---t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ... .            ...........++++++++  .|.+++++|.+..   ...+.......-|...++.+|+.+|.
T Consensus       122 ~~~-~------------~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~  188 (213)
T PRK05472        122 KIG-T------------KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDV  188 (213)
T ss_pred             hcC-C------------EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCC
Confidence            210 0            0001111223567888765  9999999997664   22233334455577789999999999


Q ss_pred             cCCHHHHHHHHHc
Q 019328          276 VIDEVALVEHLKQ  288 (342)
Q Consensus       276 ~vd~~aL~~aL~~  288 (342)
                      +|+..+|..+|..
T Consensus       189 ~v~~~~l~~~l~~  201 (213)
T PRK05472        189 IVRNVDLTVELQT  201 (213)
T ss_pred             EEEEechHHHHHH
Confidence            9999999999874

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.31  E-value=3e-06  Score=72.83  Aligned_cols=105  Identities=19%  Similarity=0.272  Sum_probs=64.8

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh-hhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      +|+|+|.|+.|..+|..| ..-|.+|..|+|+.+.. +...+.-. .........+.......+++++++.||+|++++|
T Consensus         1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~~-~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP   78 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQI-EEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP   78 (157)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHHH-HHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred             CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHHH-HHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence            689999999999999997 47789999999987432 22111100 0000000011112235789999999999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      .  ....-+-++....++++..+|++..|=
T Consensus        79 s--~~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   79 S--QAHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             G--GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             H--HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence            3  223334455666678899999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.29  E-value=2.9e-05  Score=72.65  Aligned_cols=170  Identities=15%  Similarity=0.157  Sum_probs=108.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     ..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        49 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--KD-------VDGl~~  118 (279)
T PRK14178         49 RACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--KD-------VDGFHP  118 (279)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence            34556788877655443 3577777766531     4689998754  344443 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++=                         ..+.++.||++.|+|.+ ..|+.+|
T Consensus       119 ~---n~g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~V~ViGrs~~vGrpla  169 (279)
T PRK14178        119 L---NLGRLVSGLPG-FAPCTPNGIMTLLH-------------------------EYKISIAGKRAVVVGRSIDVGRPMA  169 (279)
T ss_pred             h---hHHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCccccHHHH
Confidence            1   01111122333 34555655554431                         11358999999999999 9999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ...|+.|..+..+.                            .++.+.+++||+|+.+++..    +++.++.+  
T Consensus       170 ~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk~----~lv~~~~v--  214 (279)
T PRK14178        170 ALL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGKA----GFITPDMV--  214 (279)
T ss_pred             HHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCcc----cccCHHHc--
Confidence            997 68999998776431                            36888899999999999722    67888885  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |||+++||+|-..
T Consensus       215 -k~GavVIDVgi~~  227 (279)
T PRK14178        215 -KPGATVIDVGINQ  227 (279)
T ss_pred             -CCCcEEEEeeccc
Confidence             9999999998544

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.26  E-value=6.4e-05  Score=70.55  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             cccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .++.||++.|||.|. +|+.+|..| ...|+.|..++.+                            ..++.+.+++||+
T Consensus       155 i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADI  205 (285)
T PRK10792        155 IDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRF----------------------------TKNLRHHVRNADL  205 (285)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECC----------------------------CCCHHHHHhhCCE
Confidence            489999999999999 999999998 5789999987642                            1368899999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+.+++-    .+++..+   .+|+|+++||+|--
T Consensus       206 vi~avG~----p~~v~~~---~vk~gavVIDvGin  233 (285)
T PRK10792        206 LVVAVGK----PGFIPGE---WIKPGAIVIDVGIN  233 (285)
T ss_pred             EEEcCCC----cccccHH---HcCCCcEEEEcccc
Confidence            9999962    2356664   45899999999843

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.24  E-value=9.8e-06  Score=71.33  Aligned_cols=153  Identities=18%  Similarity=0.207  Sum_probs=89.2

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh-hhhhhccCCCC-------CccccccCCHHHHhhc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQ-------PVTWKRASSMDEVLRE  236 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~-------~~~~~~~~~l~ell~~  236 (342)
                      +|||||.|.||+.+|..++ ..|++|..||+++.....  ..... +....+.....       ........+++++. .
T Consensus         1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6999999999999999975 679999999999764221  11111 11111111110       00112357889888 9


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceE
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  316 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi  316 (342)
                      ||+|+=++|-+-+.+.-+-++.-+.++++++|...+.+  +.-..|...+.. +-+-.++=.|.  |+...||.+   |+
T Consensus        79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~~--P~~~~~lVE---vv  150 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFFN--PPHLMPLVE---VV  150 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-S--STTT--EEE---EE
T ss_pred             hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEeccc--ccccCceEE---Ee
Confidence            99999999988888888888888889999998765443  455667777653 33455555553  332234444   67


Q ss_pred             EcCCCCCCcHHHH
Q 019328          317 VVPHIASASKWTR  329 (342)
Q Consensus       317 ~TPHia~~t~~~~  329 (342)
                      -.|+.+-.+.+..
T Consensus       151 ~~~~T~~~~~~~~  163 (180)
T PF02737_consen  151 PGPKTSPETVDRV  163 (180)
T ss_dssp             E-TTS-HHHHHHH
T ss_pred             CCCCCCHHHHHHH
Confidence            7777654444433

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.24  E-value=5.6e-05  Score=70.96  Aligned_cols=169  Identities=17%  Similarity=0.224  Sum_probs=105.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|++.+....++ ..+++++.+.+..     +.|++++..+  ..+++. ++++.+-.  |=       +|.+--
T Consensus        61 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~  130 (287)
T PRK14176         61 KACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KD-------ADGFHP  130 (287)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence            34556788887655543 3567777765531     4689998754  334443 33333221  21       222110


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                         ...|-...+.+. ....++.-++.++=                         ..+.++.||++.|||.|. +|+.+|
T Consensus       131 ---~N~g~l~~g~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrs~iVGkPla  181 (287)
T PRK14176        131 ---YNMGKLMIGDEG-LVPCTPHGVIRALE-------------------------EYGVDIEGKNAVIVGHSNVVGKPMA  181 (287)
T ss_pred             ---hhhhhHhcCCCC-CCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCcccHHHHH
Confidence               011111122232 34556665554431                         123589999999999999 999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ...|+.|..++..                            ..++.+..++||+|+.++.-    .++|..+   .
T Consensus       182 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvv~AvG~----p~~i~~~---~  225 (287)
T PRK14176        182 AML-LNRNATVSVCHVF----------------------------TDDLKKYTLDADILVVATGV----KHLIKAD---M  225 (287)
T ss_pred             HHH-HHCCCEEEEEecc----------------------------CCCHHHHHhhCCEEEEccCC----ccccCHH---H
Confidence            998 6789999887642                            13688889999999998763    2467666   5


Q ss_pred             CCCCcEEEecCCC
Q 019328          262 MKKEAILVNCSRG  274 (342)
Q Consensus       262 mk~gailIN~sRG  274 (342)
                      +|+|+++||+|--
T Consensus       226 vk~gavVIDvGin  238 (287)
T PRK14176        226 VKEGAVIFDVGIT  238 (287)
T ss_pred             cCCCcEEEEeccc
Confidence            6899999999853

>PRK07680 late competence protein ComER; Validated

Probab=98.20  E-value=9.6e-06  Score=75.90  Aligned_cols=104  Identities=19%  Similarity=0.277  Sum_probs=71.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      +|||||+|.||+.+++.|. ..|    .+|.+|+|++... ..+.+.+         .  +.....+..+++..||+|++
T Consensus         2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~---------~--g~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY---------P--GIHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc---------C--CeEEECCHHHHHHhCCEEEE
Confidence            6999999999999999874 445    3799999987542 2211111         0  11223578888899999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                      ++| ......++ ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            998 33344444 3444567888999999854  36777766654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.19  E-value=5.2e-06  Score=77.01  Aligned_cols=104  Identities=16%  Similarity=0.265  Sum_probs=71.0

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      +|||||+|+||+.+++.|. ..|.   .+.+|+|+..+. +.+.+.++           +.....+.++++++||+|+++
T Consensus         2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~~-----------~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERFP-----------KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHcC-----------CceEeCCHHHHHHhCCEEEEE
Confidence            7999999999999999974 4443   357899876542 22211110           112245788899999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +| ......++..  + .++++.++|.++  .-+..+.|.+.+..+
T Consensus        69 v~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         69 VR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             eC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            99 3444444432  3 357889999977  347788888887653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.17  E-value=0.00025  Score=71.85  Aligned_cols=228  Identities=18%  Similarity=0.185  Sum_probs=122.5

Q ss_pred             HHHHHhCCCeEEEecC--CCCCCCHHHHHHH---hc-----CCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCc
Q 019328           30 INLLIEQDCRVEICTQ--KKTILSVEDIIAL---IG-----DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN   99 (342)
Q Consensus        30 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~---~~-----~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~   99 (342)
                      .+.|.+.|+++.+...  ....++.++..+.   +.     +++|+|+-- ..+ +.+-++.+++ |-.+|+...-..|.
T Consensus        23 v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV-~~P-~~~e~~~l~~-g~~li~~l~p~~~~   99 (509)
T PRK09424         23 VEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKV-NAP-SDDEIALLRE-GATLVSFIWPAQNP   99 (509)
T ss_pred             HHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEe-CCC-CHHHHHhcCC-CCEEEEEeCcccCH
Confidence            5677778888866433  2234555555531   10     136766621 222 3444667765 32455554444444


Q ss_pred             cChhHHHhCCceEEc---CCC---CC----chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 019328          100 VDVNAANKYGIAVGN---TPG---VL----TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (342)
Q Consensus       100 id~~~a~~~gI~v~n---~p~---~~----~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvG  169 (342)
                      =-++++.++||.+..   .|-   ..    =.++|+.+=      +|-+..+.+.+  |...  ...........|.+|.
T Consensus       100 ~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~~~--~g~~taaG~~pg~kVl  169 (509)
T PRK09424        100 ELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GRFF--TGQITAAGKVPPAKVL  169 (509)
T ss_pred             HHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--cccC--CCceeccCCcCCCEEE
Confidence            446777899988766   221   00    122333221      22222221111  1110  0000001145699999


Q ss_pred             EEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh---hccCC--CCCcccccc--CC--------HHHHh
Q 019328          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANG--EQPVTWKRA--SS--------MDEVL  234 (342)
Q Consensus       170 IiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~--~~--------l~ell  234 (342)
                      |+|.|.+|...++.+ +.+|++|+++|+++.....  .+.+|..   .....  ....++...  .+        +.+.+
T Consensus       170 ViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rle~--aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~  246 (509)
T PRK09424        170 VIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVAEQ--VESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA  246 (509)
T ss_pred             EECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence            999999999999985 8999999999998865322  2223321   00000  000000000  01        12223


Q ss_pred             hcCCEEEEcCCCCcc-cccccCHhHHccCCCCcEEEecCC
Q 019328          235 READVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~sDiV~l~lplt~~-t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ..+|+|+.+...... .-.++.++.++.||||+.++++|=
T Consensus       247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            579999998753221 335567899999999999999974

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.16  E-value=1.4e-05  Score=73.24  Aligned_cols=109  Identities=19%  Similarity=0.277  Sum_probs=67.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcC--CcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+++|||||.|.||+.+++.+++..  ..+ ++.++++.....+.+...+            +.....+++++++++|+|
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~DiV   70 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------------NVSTTTDWKQHVTSVDTI   70 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------------CcEEeCChHHHHhcCCEE
Confidence            3578999999999999999874321  234 7778875322223222211            112235788999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ++++|. ...+.++ ++.-..++ +.++|.++=|  ++.+.|.+.+..+
T Consensus        71 iiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         71 VLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             EEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            999993 2223322 22222233 5688988766  4555676666543

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.16  E-value=2.2e-05  Score=74.38  Aligned_cols=146  Identities=14%  Similarity=0.154  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019328          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (342)
Q Consensus       177 G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~  256 (342)
                      |+.+|++| ..-|..|++||+++....+...+.    +..     .+.....+..+++++||+|++|+|..++++.++ .
T Consensus        32 GspMArnL-lkAGheV~V~Drnrsa~e~e~~e~----Lae-----aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~  100 (341)
T TIGR01724        32 GSRMAIEF-AMAGHDVVLAEPNREFMSDDLWKK----VED-----AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R  100 (341)
T ss_pred             HHHHHHHH-HHCCCEEEEEeCChhhhhhhhhHH----HHH-----CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence            78999998 467999999998765321110000    111     122345689999999999999999888888887 5


Q ss_pred             hHHccCCCCcEEEecCCCccCCHHHHHHHHHcC-CccEEEeecCCCCCCCCCCccCCCceEEc----CCCCCCcHHHHHH
Q 019328          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPYMKPGLSEMKNAIVV----PHIASASKWTREG  331 (342)
Q Consensus       257 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g-~i~gaalDV~~~EP~~~~~L~~~~nvi~T----PHia~~t~~~~~~  331 (342)
                      ..++.+++|+++||+|+.   +.+.+++.|+.. ++..--+-|..--|..=|.--++..-++.    --.+.+|.|..++
T Consensus       101 GLaa~L~~GaIVID~STI---sP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~  177 (341)
T TIGR01724       101 TIIEHVPENAVICNTCTV---SPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISK  177 (341)
T ss_pred             HHHhcCCCCCEEEECCCC---CHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCHHHHHH
Confidence            688999999999999764   467777777651 01123344455555311111112112222    2234567777776


Q ss_pred             HHHHH
Q 019328          332 MATLA  336 (342)
Q Consensus       332 ~~~~~  336 (342)
                      +.+.+
T Consensus       178 ~~el~  182 (341)
T TIGR01724       178 CVELA  182 (341)
T ss_pred             HHHHH
Confidence            66554

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.15  E-value=0.00013  Score=68.40  Aligned_cols=170  Identities=16%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     ..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p  123 (284)
T PRK14170         54 KRTEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KD-------VDGFHP  123 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence            34556788877655443 3467777765531     4689998754  344443 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      ..   .|-...+.++ ....++.-++.++-                         ..+.++.||++.|||-+. +|+.+|
T Consensus       124 ~N---~g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvVvGrS~iVGkPla  174 (284)
T PRK14170        124 VN---VGNLFIGKDS-FVPCTPAGIIELIK-------------------------STGTQIEGKRAVVIGRSNIVGKPVA  174 (284)
T ss_pred             hh---hhHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            10   0111112222 35556666555441                         124589999999999965 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..+...                            ..++.+.+++||+|+.++.-    .+++..+.+  
T Consensus       175 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~v--  219 (284)
T PRK14170        175 QLL-LNENATVTIAHSR----------------------------TKDLPQVAKEADILVVATGL----AKFVKKDYI--  219 (284)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence            998 5678999876532                            13688999999999999883    456777765  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       220 -k~GavVIDvGin~  232 (284)
T PRK14170        220 -KPGAIVIDVGMDR  232 (284)
T ss_pred             -CCCCEEEEccCcc
Confidence             7999999998655

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=9.1e-05  Score=69.60  Aligned_cols=171  Identities=20%  Similarity=0.206  Sum_probs=107.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+.     +..|++++..+  ..++... ++..+-.  |=       +|.+.-
T Consensus        52 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~  121 (287)
T PRK14173         52 RQAKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--KD-------VDGFHP  121 (287)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence            34556788887655543 356777766553     13689998754  3444433 3333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+.+. ....++.-++.++-                         ..+.++.||++.|||-+ .+|+.+|
T Consensus       122 ~---N~g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla  172 (287)
T PRK14173        122 L---NVGRLWMGGEA-LEPCTPAGVVRLLK-------------------------HYGIPLAGKEVVVVGRSNIVGKPLA  172 (287)
T ss_pred             h---hhHHHhcCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence            0   01111112222 34556665554441                         12358999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..+..+                            ..++.+..++||+|+.++.-    .+++..+.+  
T Consensus       173 ~lL-~~~~aTVtichs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~v--  217 (287)
T PRK14173        173 ALL-LREDATVTLAHSK----------------------------TQDLPAVTRRADVLVVAVGR----PHLITPEMV--  217 (287)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence            998 5778999876532                            13688999999999999972    367877776  


Q ss_pred             CCCCcEEEecCCCcc
Q 019328          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~gailIN~sRG~~  276 (342)
                       |+|+++||+|.-.+
T Consensus       218 -k~GavVIDVGin~~  231 (287)
T PRK14173        218 -RPGAVVVDVGINRV  231 (287)
T ss_pred             -CCCCEEEEccCccc
Confidence             79999999997654

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=0.00017  Score=67.47  Aligned_cols=170  Identities=17%  Similarity=0.230  Sum_probs=105.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+++.+..++ ..+++|+.+.+.     ++.|++++..+  ..+++. +++..+-.  |=       +|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KD-------VDGl~~  124 (278)
T PRK14172         55 KVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN--KD-------IDCLTF  124 (278)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cCccCH
Confidence            34556788887655433 356777776553     13689998754  344443 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||-+ .+|+.+|
T Consensus       125 ~---n~g~l~~g~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~~VGkPla  175 (278)
T PRK14172        125 I---SVGKFYKGEKC-FLPCTPNSVITLI----KS---------------------LNIDIEGKEVVVIGRSNIVGKPVA  175 (278)
T ss_pred             h---hHHHHhCCCCC-CcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            0   11111111222 3445555555433    11                     1348999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..++.+                            ..++.+..++||+|+.++.-    .++|..+.+  
T Consensus       176 ~lL-~~~~AtVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~i--  220 (278)
T PRK14172        176 QLL-LNENATVTICHSK----------------------------TKNLKEVCKKADILVVAIGR----PKFIDEEYV--  220 (278)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence            998 5778999887542                            13688999999999999983    456777774  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       221 -k~gavVIDvGin~  233 (278)
T PRK14172        221 -KEGAIVIDVGTSS  233 (278)
T ss_pred             -CCCcEEEEeeccc
Confidence             7999999997544

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=0.00022  Score=66.95  Aligned_cols=171  Identities=16%  Similarity=0.213  Sum_probs=108.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--KD-------VDGl~~  124 (284)
T PRK14190         55 KAAEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--KD-------VDGFHP  124 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cc-------ccccCH
Confidence            34556788887655443 3567777665531     3678988754  344443 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc-ChHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~-G~IG~~vA  181 (342)
                      ..   .|-...+.++ ....++.-++.++=                         ..+.++.||++.|||- ..+|+.+|
T Consensus       125 ~n---~g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~Gk~vvViGrS~iVG~Pla  175 (284)
T PRK14190        125 IN---VGRMMLGQDT-FLPCTPHGILELLK-------------------------EYNIDISGKHVVVVGRSNIVGKPVG  175 (284)
T ss_pred             hh---HHHHhcCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence            11   1111122233 34566666554441                         1235899999999999 56799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..++.+                            ..++.+.+++||+|+.++.    ..++|..+.+  
T Consensus       176 ~lL-~~~~atVt~chs~----------------------------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~i--  220 (284)
T PRK14190        176 QLL-LNENATVTYCHSK----------------------------TKNLAELTKQADILIVAVG----KPKLITADMV--  220 (284)
T ss_pred             HHH-HHCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecC----CCCcCCHHHc--
Confidence            998 5778999887532                            1368889999999999986    3457888887  


Q ss_pred             CCCCcEEEecCCCcc
Q 019328          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~gailIN~sRG~~  276 (342)
                       |+|+++||+|.-.+
T Consensus       221 -k~gavVIDvGi~~~  234 (284)
T PRK14190        221 -KEGAVVIDVGVNRL  234 (284)
T ss_pred             -CCCCEEEEeecccc
Confidence             89999999987653

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.09  E-value=1.2e-05  Score=69.77  Aligned_cols=110  Identities=20%  Similarity=0.270  Sum_probs=70.5

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccC--CC-CC----------cccccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN--GE-QP----------VTWKRA  227 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~--~~-~~----------~~~~~~  227 (342)
                      ..+...+|.|+|.|+.|+..++.+ +++|++|..+|.++.... .............  .. ..          ......
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERLR-QLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE   93 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHHH-HHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHHH-hhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence            357789999999999999999996 899999999998875321 1111111111110  00 00          001123


Q ss_pred             CCHHHHhhcCCEEEEc-CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       228 ~~l~ell~~sDiV~l~-lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      ..|.+.++.+|+|+.+ +--.+..-.++.++.++.||||++++++|
T Consensus        94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            4578899999998864 43356677899999999999999999996

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.08  E-value=1.3e-05  Score=80.38  Aligned_cols=117  Identities=15%  Similarity=0.208  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEEcCCCCccccc
Q 019328          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH  252 (342)
Q Consensus       176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l~lplt~~t~~  252 (342)
                      ||+.+|++|+ .-|.+|.+|||++.+.. .+.+..       +. ..+.....+++++++.   +|+|++++|..+.+..
T Consensus         1 MG~~mA~nL~-~~G~~V~v~nrt~~~~~-~l~~~~-------g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~   70 (459)
T PRK09287          1 MGKNLALNIA-SHGYTVAVYNRTPEKTD-EFLAEE-------GK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA   70 (459)
T ss_pred             CcHHHHHHHH-hCCCeEEEECCCHHHHH-HHHHhh-------CC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            7999999984 67999999999976532 222110       10 0123345789998875   8999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  303 (342)
                      ++ ...+..|.+|.++|+++....-|...+.+.+++..+.....=|.-.++
T Consensus        71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            88 568899999999999999999999999999998877665555555544

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.08  E-value=5.6e-06  Score=68.69  Aligned_cols=93  Identities=22%  Similarity=0.293  Sum_probs=53.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .-.+|||||.|+.|..+++.| +.-|..|.++ +|+....... .          ..  .......++++++..+|++++
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a-~----------~~--~~~~~~~~~~~~~~~aDlv~i   74 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERA-A----------AF--IGAGAILDLEEILRDADLVFI   74 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHH-H----------C----TT-----TTGGGCC-SEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccccccc-c----------cc--cccccccccccccccCCEEEE
Confidence            346899999999999999998 6778988765 6665332111 0          00  111234578899999999999


Q ss_pred             cCCCCcccccccCHhHHcc--CCCCcEEEecC
Q 019328          243 HPVLDKTTYHLINKERLAT--MKKEAILVNCS  272 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~--mk~gailIN~s  272 (342)
                      ++|.+. ... +-++.-..  .++|.+++-||
T Consensus        75 avpDda-I~~-va~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   75 AVPDDA-IAE-VAEQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             -S-CCH-HHH-HHHHHHCC--S-TT-EEEES-
T ss_pred             EechHH-HHH-HHHHHHHhccCCCCcEEEECC
Confidence            999553 222 23333333  68999999885

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.06  E-value=2.7e-05  Score=70.51  Aligned_cols=116  Identities=23%  Similarity=0.304  Sum_probs=89.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH---hhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~sDiV~l  242 (342)
                      +++|.||+|+||..+++|| ..-|.+|++||+++....+.         ...+     .....+++++   |...-+|-+
T Consensus         1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~---------~~~g-----a~~a~sl~el~~~L~~pr~vWl   65 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEEL---------KDEG-----ATGAASLDELVAKLSAPRIVWL   65 (300)
T ss_pred             CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHH---------HhcC-----CccccCHHHHHHhcCCCcEEEE
Confidence            4799999999999999998 67899999999998754322         1112     2234567665   456789999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~  299 (342)
                      .+|-..-|...| .++-..|.+|-++|+-+...--|....++.|++..|.  -+||=
T Consensus        66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G  119 (300)
T COG1023          66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG  119 (300)
T ss_pred             EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence            999876666654 4566778999999999999989999999999988764  34653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.06  E-value=4.5e-05  Score=69.58  Aligned_cols=139  Identities=19%  Similarity=0.224  Sum_probs=92.3

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc---EEEEEcCCh----hhH--HHHHHhhhhhhhccCCCCCccccccCCHH
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      .++.++++.|+|.|.+|+.+|+.| ...|+   +|+.+||+.    ...  ...+...+.   +......  .  ..++.
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~--~~~l~   92 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T--GGTLK   92 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c--cCCHH
Confidence            468899999999999999999997 57787   499999982    211  111111111   1100001  1  13687


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC-ccEEEeecCCCCCCCCCCcc
Q 019328          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS  310 (342)
Q Consensus       232 ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~  310 (342)
                      +.++++|+|+.+.|     .++++++.++.|+++.++...+.  ...|.-+.+|.+.|. +..-|.     +    ....
T Consensus        93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~a~G~-----~----~~~~  156 (226)
T cd05311          93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIVATGR-----S----DFPN  156 (226)
T ss_pred             HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEEEeCC-----C----CCcc
Confidence            88899999999987     57788999999999999998883  334555555555443 333331     1    1235


Q ss_pred             CCCceEEcCCCCC
Q 019328          311 EMKNAIVVPHIAS  323 (342)
Q Consensus       311 ~~~nvi~TPHia~  323 (342)
                      +..|+++-|-++-
T Consensus       157 Q~nn~~~fPg~~~  169 (226)
T cd05311         157 QVNNVLGFPGIFR  169 (226)
T ss_pred             ccceeeecchhhH
Confidence            7789999998763

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.05  E-value=8.3e-05  Score=69.15  Aligned_cols=102  Identities=23%  Similarity=0.312  Sum_probs=66.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ++|||||+|.||+.+++.+ ...|   .+|.+|+|+++.. +.+.+.++            .....+.++++.+||+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~~-~~~~~~~g------------~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEKR-AALAEEYG------------VRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHHH-HHHHHhcC------------CeecCChHHHHhcCCEEEE
Confidence            5799999999999999987 4556   6899999987542 22211111            1123577888899999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                      |+|. ...+.++ ++....+  +..+|.+.-|-  ..+.+.+.+.
T Consensus        69 ~v~~-~~~~~v~-~~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         69 AVKP-QVMEEVL-SELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             EcCH-HHHHHHH-HHHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            9982 2233332 2222223  45777776653  5566666654

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=0.00021  Score=66.95  Aligned_cols=170  Identities=18%  Similarity=0.228  Sum_probs=104.9

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+.     +..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~  123 (281)
T PRK14183         54 KACDRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KD-------VDGFHP  123 (281)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hc-------ccccCh
Confidence            34456788876654433 346777766553     13689998754  345543 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||-+ .+|+.+|
T Consensus       124 ~---n~g~l~~g~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~~VG~Pla  174 (281)
T PRK14183        124 Y---NVGRLVTGLDG-FVPCTPLGVMELL----EE---------------------YEIDVKGKDVCVVGASNIVGKPMA  174 (281)
T ss_pred             h---hhhHHhcCCCC-CCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCcchHHHH
Confidence            0   01111112232 3445565555433    11                     2358999999999999 8899999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..+...                            ..++.+..++||+|+.++.    ..+++..+.+  
T Consensus       175 ~lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~v--  219 (281)
T PRK14183        175 ALL-LNANATVDICHIF----------------------------TKDLKAHTKKADIVIVGVG----KPNLITEDMV--  219 (281)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCEEEEecC----cccccCHHHc--
Confidence            998 5678999876431                            1368889999999999987    2456777665  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       220 -k~gavvIDvGin~  232 (281)
T PRK14183        220 -KEGAIVIDIGINR  232 (281)
T ss_pred             -CCCcEEEEeeccc
Confidence             7999999998443

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.05  E-value=2.1e-05  Score=75.49  Aligned_cols=101  Identities=17%  Similarity=0.140  Sum_probs=65.1

Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHh--hhhhhhccCC----CCCccccccCCHHHHhhcCCEE
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVT--AYGQFLKANG----EQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      |||+|||+||+.+++.+.+.-++++.+. |..++. ......  +|..+.....    ....+.....++++++.++|+|
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~-~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV   79 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDF-EAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV   79 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHH-HHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence            6999999999999998644457888765 433321 111111  1211100000    0000112245799999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +.|.|   .+.|..+++.+.+|+++++|+-.-
T Consensus        80 ve~Tp---~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        80 VDATP---GGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             EECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence            98854   778899999999999999998653

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.05  E-value=1.1e-05  Score=80.23  Aligned_cols=98  Identities=18%  Similarity=0.262  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|++++|+|.|.||+.+++.| ...| .+|++++|+.... ..+...++       .   ......++.+.+..+|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~g-------~---~~i~~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKELG-------G---EAVKFEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHcC-------C---eEeeHHHHHHHHhhCCEE
Confidence            47899999999999999999997 5788 6899999987542 22222111       0   011224677888999999


Q ss_pred             EEcCCCCcccccccCHhHHccCC----CCcEEEecCCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRG  274 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk----~gailIN~sRG  274 (342)
                      +.|++   .+..+++++.++.+.    .+.++|+.+.-
T Consensus       245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~P  279 (417)
T TIGR01035       245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVP  279 (417)
T ss_pred             EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCC
Confidence            99965   455678888777652    23588888753

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=0.0004  Score=65.26  Aligned_cols=170  Identities=14%  Similarity=0.190  Sum_probs=104.9

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|++++....++ ..+++++.+.+.     +..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KD-------VDGl~~  124 (288)
T PRK14171         55 KNAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KD-------IDGFHP  124 (288)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cccCCc
Confidence            34556788887655433 356777776653     24689998754  344443 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      .   ..|-...+........++.-++.++    ++                     .+.++.||++.|||-+. +|+++|
T Consensus       125 ~---N~g~l~~g~~~~~~PcTp~av~~lL----~~---------------------y~i~l~GK~vvViGrS~iVGkPla  176 (288)
T PRK14171        125 L---NVGYLHSGISQGFIPCTALGCLAVI----KK---------------------YEPNLTGKNVVIIGRSNIVGKPLS  176 (288)
T ss_pred             c---chhhhhcCCCCCCcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            0   1111112221123455555544333    11                     13479999999999965 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..+..+                            ..++.+..++||+|+.++.-    .++|..+.+  
T Consensus       177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~v--  221 (288)
T PRK14171        177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEYF--  221 (288)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHHc--
Confidence            998 5678999876532                            14688999999999999982    367877775  


Q ss_pred             CCCCcEEEecCCC
Q 019328          262 MKKEAILVNCSRG  274 (342)
Q Consensus       262 mk~gailIN~sRG  274 (342)
                       |+|+++||+|--
T Consensus       222 -k~GavVIDvGin  233 (288)
T PRK14171        222 -NPESIVIDVGIN  233 (288)
T ss_pred             -CCCCEEEEeecc
Confidence             799999999843

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.02  E-value=1.1e-05  Score=75.51  Aligned_cols=107  Identities=20%  Similarity=0.337  Sum_probs=77.8

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+...+|.|||.|.+|..-||.+ .++|++|...|.+.+. .....+.|+.-      .........++++.+.++|+|+
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~r-l~~ldd~f~~r------v~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDR-LRQLDDLFGGR------VHTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CCCCccEEEECCccccchHHHHH-hccCCeeEEEecCHHH-HhhhhHhhCce------eEEEEcCHHHHHHHhhhccEEE
Confidence            46678899999999999999994 7999999999998653 22222222210      0011112356889999999998


Q ss_pred             Ec--CCCCcccccccCHhHHccCCCCcEEEecC--CCccC
Q 019328          242 LH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (342)
Q Consensus       242 l~--lplt~~t~~li~~~~l~~mk~gailIN~s--RG~~v  277 (342)
                      -.  +| ....-.++.++.+++||||+++|+++  .|+++
T Consensus       237 gaVLIp-gakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~  275 (371)
T COG0686         237 GAVLIP-GAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCF  275 (371)
T ss_pred             EEEEec-CCCCceehhHHHHHhcCCCcEEEEEEEcCCCce
Confidence            76  45 34567888999999999999999986  35544

>PLN00203 glutamyl-tRNA reductase

Probab=98.02  E-value=2.3e-05  Score=79.73  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.+++|+|||.|.||+.+++.| ...|+ +|++++|+.... ..+...++      + .........++.+.+.+||+|
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~~------g-~~i~~~~~~dl~~al~~aDVV  333 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEFP------D-VEIIYKPLDEMLACAAEADVV  333 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHhC------C-CceEeecHhhHHHHHhcCCEE
Confidence            48899999999999999999997 57887 799999987542 22222221      0 011112234677889999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCC-------cEEEecCCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKE-------AILVNCSRG  274 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~g-------ailIN~sRG  274 (342)
                      +.+.|   ....+|.++.++.++++       -+|||.+--
T Consensus       334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            99875   45667888888877432       377877643

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=0.00022  Score=66.91  Aligned_cols=171  Identities=20%  Similarity=0.216  Sum_probs=106.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++++.+.+..     ..|++++..+  ..++.. +++..+-.  |=|    -|+....+
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDV----DGl~~~n~  127 (284)
T PRK14193         55 RDCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDA----DGLHPTNL  127 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCc----cCCChhhh
Confidence            34556788876654433 3567777765531     3689998754  344443 34433222  211    01111111


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                            |-...+.++ ....++.-++.++=                         ..+.++.||++.|||-+ .+|+.+|
T Consensus       128 ------g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrS~~VGkPla  175 (284)
T PRK14193        128 ------GRLVLNEPA-PLPCTPRGIVHLLR-------------------------RYDVELAGAHVVVIGRGVTVGRPIG  175 (284)
T ss_pred             ------hHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence                  111122233 24555665554441                         12358999999999985 5799999


Q ss_pred             HHHHhc--CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHH
Q 019328          182 RMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (342)
Q Consensus       182 ~~l~~a--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l  259 (342)
                      ..|. .  -++.|..+...                            ..++.+.+++||+|+.++.-    .++|..+.+
T Consensus       176 ~lL~-~~~~~atVtvchs~----------------------------T~~l~~~~k~ADIvV~AvGk----p~~i~~~~i  222 (284)
T PRK14193        176 LLLT-RRSENATVTLCHTG----------------------------TRDLAAHTRRADIIVAAAGV----AHLVTADMV  222 (284)
T ss_pred             HHHh-hccCCCEEEEeCCC----------------------------CCCHHHHHHhCCEEEEecCC----cCccCHHHc
Confidence            9984 4  68999877532                            13688999999999999883    357877775


Q ss_pred             ccCCCCcEEEecCCCcc
Q 019328          260 ATMKKEAILVNCSRGPV  276 (342)
Q Consensus       260 ~~mk~gailIN~sRG~~  276 (342)
                         |+|+++||+|.-.+
T Consensus       223 ---k~GavVIDvGin~~  236 (284)
T PRK14193        223 ---KPGAAVLDVGVSRA  236 (284)
T ss_pred             ---CCCCEEEEcccccc
Confidence               79999999986653

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.00  E-value=3e-05  Score=72.43  Aligned_cols=107  Identities=19%  Similarity=0.328  Sum_probs=69.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a-~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|||||+|.||+.+++.+.+. .+++ +.++|+++... +.+.+.+            +...+.++++++.++|+|++|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~~------------~~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASKT------------GAKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHhc------------CCeeECCHHHHhcCCCEEEEc
Confidence            3799999999999999987432 3576 44689886542 2221111            112346899999999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCH---HHHHHHHHcCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~---~aL~~aL~~g~  290 (342)
                      .|  ++...   +-....++.|.-++..+.|.+.|.   +.|.++.+++.
T Consensus        69 a~--~~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g  113 (265)
T PRK13304         69 AS--VNAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN  113 (265)
T ss_pred             CC--hHHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence            88  33222   122334456666777888888764   46666666654

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.99  E-value=2.8e-05  Score=67.03  Aligned_cols=81  Identities=21%  Similarity=0.303  Sum_probs=57.2

Q ss_pred             ccccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 g~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +.++.||++.|||-+. +|+.++..| ..-|+.|..++.+                            ..++++.+++||
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~----------------------------T~~l~~~~~~AD   81 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSK----------------------------TKNLQEITRRAD   81 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TT----------------------------SSSHHHHHTTSS
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCC----------------------------CCcccceeeecc
Confidence            3579999999999985 999999998 6789999887543                            147888999999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      +|+.++.-    .++|..+.   +|+|+++||++.-..
T Consensus        82 IVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   82 IVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV  112 (160)
T ss_dssp             EEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred             EEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence            99999873    45565554   589999999987664

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=0.00023  Score=67.28  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             cccCCCEEEEEccCh-HHHHHHHHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328          161 NLLKGQTVGVIGAGR-IGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      .++.||++.|||-+. +|+++|.+|.+.   -++.|.....+                            ..++.+.+++
T Consensus       155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~----------------------------t~~l~~~~~~  206 (295)
T PRK14174        155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA----------------------------TKDIPSYTRQ  206 (295)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC----------------------------chhHHHHHHh
Confidence            589999999999964 699999987432   47787765432                            1368889999


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ||+|+.+++..    ++|..+.+   |+|+++||+|--.
T Consensus       207 ADIvI~Avg~~----~li~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        207 ADILIAAIGKA----RFITADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             CCEEEEecCcc----CccCHHHc---CCCCEEEEeeccc
Confidence            99999999632    77888888   8999999998544

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.98  E-value=5.7e-05  Score=70.31  Aligned_cols=106  Identities=24%  Similarity=0.324  Sum_probs=76.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++|||||+|+||+.++.-+ ..-|    -+|++.+|+.+.+. .+.+.|+.          .  ...+..++..++|+|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~g~----------~--~~~~~~~~~~~advv~   67 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEYGV----------V--TTTDNQEAVEEADVVF   67 (266)
T ss_pred             ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHcCC----------c--ccCcHHHHHhhCCEEE
Confidence            5899999999999999987 4555    58999999987653 33333321          1  1467788999999999


Q ss_pred             EcCCCCcccccccCHhHHccCC---CCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk---~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      +++.  |+.    -++.++.++   ++.++|.++-|-  ..+.|.+.|.+.++..
T Consensus        68 LavK--Pq~----~~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~~~~vvR  114 (266)
T COG0345          68 LAVK--PQD----LEEVLSKLKPLTKDKLVISIAAGV--SIETLERLLGGLRVVR  114 (266)
T ss_pred             EEeC--hHh----HHHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcCCCceEE
Confidence            9998  532    255666666   689999998774  5577777776444433

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.97  E-value=3.6e-05  Score=68.70  Aligned_cols=94  Identities=20%  Similarity=0.227  Sum_probs=64.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++++|+|.|+||..+|+++ ...|.+|.+-+++.++..+...+..+          .. ....+.++..+.+|+|++.+|
T Consensus         2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~l~----------~~-i~~~~~~dA~~~aDVVvLAVP   69 (211)
T COG2085           2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAALG----------PL-ITGGSNEDAAALADVVVLAVP   69 (211)
T ss_pred             cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHhhc----------cc-cccCChHHHHhcCCEEEEecc
Confidence            5899999999999999998 47899998886665443332211110          01 123578899999999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      ...- .. +.++....+. |.++|++.-.
T Consensus        70 ~~a~-~~-v~~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          70 FEAI-PD-VLAELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHH-Hh-HHHHHHHHhC-CeEEEecCCC
Confidence            6442 22 2345555555 8899988653

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.97  E-value=4.4e-05  Score=67.51  Aligned_cols=149  Identities=15%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhccCCCCCccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ++|+|+|+|.+|..+|..++ ..|.+|++||.+++.. +....+..        +.++... ..-......+.++.+++|
T Consensus         1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence            58999999999999999985 7899999999987632 11111100        0000000 000112345778889999


Q ss_pred             CEEEEcCCCCcccccccC--------HhHHccCCCCcEEEecCCCccCCHHHHH-HHHHcCCccEEEee-cCCCCCCCC-
Q 019328          238 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-VFEDEPYMK-  306 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~--------~~~l~~mk~gailIN~sRG~~vd~~aL~-~aL~~g~i~gaalD-V~~~EP~~~-  306 (342)
                      |++++|+|...+..+-.|        +...+.++++.++|.-|+-.+=-.+.+. ..|++....+.-++ +|.+|=..+ 
T Consensus        78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G  157 (185)
T PF03721_consen   78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG  157 (185)
T ss_dssp             SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred             ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence            999999994333322222        3455667899999999998887677444 44444322111111 244554432 


Q ss_pred             ---CCccCCCceEE
Q 019328          307 ---PGLSEMKNAIV  317 (342)
Q Consensus       307 ---~~L~~~~nvi~  317 (342)
                         ..+.+.|+|++
T Consensus       158 ~a~~d~~~~~rvV~  171 (185)
T PF03721_consen  158 RAIEDFRNPPRVVG  171 (185)
T ss_dssp             SHHHHHHSSSEEEE
T ss_pred             CcchhccCCCEEEE
Confidence               25777788874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.96  E-value=9.2e-05  Score=62.47  Aligned_cols=80  Identities=23%  Similarity=0.349  Sum_probs=65.2

Q ss_pred             ccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +.++.||++.|+|- +..|+.+|.+| ...|+.|..++.+.                            .++++.+++||
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD   73 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence            45899999999999 56799999997 57899998876431                            36888999999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +|+.+++..    ++|+.+.   +|||+++|+++...
T Consensus        74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            999998844    5677766   58999999998655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=0.00042  Score=65.02  Aligned_cols=170  Identities=18%  Similarity=0.266  Sum_probs=106.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccH-HHHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~-~~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|++++....++ ..+++|+.+.+..     ..|++++..+  ..+++ .+++..+-.  |=|    -|+....+
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDV----DGl~~~N~  125 (282)
T PRK14169         53 RRAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDV----DGFSPVSV  125 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCc----ccCChhhh
Confidence            34556788887655443 3567777765531     3689998754  34443 333333221  211    01111111


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                            |-...+.++ ....++.-++.++=                         ..+.++.||++.|||-+. +|+.+|
T Consensus       126 ------g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla  173 (282)
T PRK14169        126 ------GRLWANEPT-VVASTPYGIMALLD-------------------------AYDIDVAGKRVVIVGRSNIVGRPLA  173 (282)
T ss_pred             ------HHHhcCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence                  111122333 35566666655441                         113589999999999964 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..+...                            ..++.+..++||+|+.+++-    .+++..+.+  
T Consensus       174 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~v--  218 (282)
T PRK14169        174 GLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEADILVVAVGV----PHFIGADAV--  218 (282)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence            998 5779999877432                            13688899999999999983    456777765  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       219 -k~GavVIDvGin~  231 (282)
T PRK14169        219 -KPGAVVIDVGISR  231 (282)
T ss_pred             -CCCcEEEEeeccc
Confidence             7999999998644

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=0.00045  Score=64.77  Aligned_cols=171  Identities=16%  Similarity=0.145  Sum_probs=107.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+.+..++ ..+++++.+.+.     +..|++++..+  ..+++. +++..+-.  |       -+|.+..
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~  122 (282)
T PRK14182         53 KDCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--K-------DADGFHP  122 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence            34556788887655543 346777776653     14689998754  344443 33333221  2       1222221


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+.++.....++.-++.++    ++                     .+.++.||++.|||-+ .+|+++|
T Consensus       123 ~---n~g~l~~g~~~~~~PcTp~avi~ll----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla  174 (282)
T PRK14182        123 F---NVGALSIGIAGVPRPCTPAGVMRML----DE---------------------ARVDPKGKRALVVGRSNIVGKPMA  174 (282)
T ss_pred             h---HHHHHhCCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            1   1121222333323445565555443    11                     1347999999999995 5699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .+| ..-++.|..+..+                            ..++.+..++||+|+.++.-    .++|..+.+  
T Consensus       175 ~lL-~~~~AtVtichs~----------------------------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~i--  219 (282)
T PRK14182        175 MML-LERHATVTIAHSR----------------------------TADLAGEVGRADILVAAIGK----AELVKGAWV--  219 (282)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence            998 5678999887542                            13688899999999999982    567877775  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       220 -k~gaiVIDvGin~  232 (282)
T PRK14182        220 -KEGAVVIDVGMNR  232 (282)
T ss_pred             -CCCCEEEEeecee
Confidence             7999999998554

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.95  E-value=6.9e-05  Score=57.67  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=53.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ..+.+++++|+|.|.+|+.+++.+ ... +.+|.+||+                                        |+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di   57 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI   57 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence            368899999999999999999997 455 567766531                                        99


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      ++.+.+-    .+.+.++..+.+++++++++++
T Consensus        58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          58 LVTATPA----GVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence            9998873    3445566788899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=4.5e-05  Score=71.86  Aligned_cols=79  Identities=23%  Similarity=0.335  Sum_probs=64.2

Q ss_pred             cccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .++.||++.|||.|. .|+++|..| ...|++|..+++..                            .++.+.+++||+
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aDI  205 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQADI  205 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCCE
Confidence            589999999999998 999999997 57889999887621                            357777899999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |+.+++ .+   +++..+.   +|+|++++|++-..
T Consensus       206 vI~AtG-~~---~~v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        206 IVGAVG-KP---ELIKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             EEEccC-CC---CcCCHHH---cCCCCEEEEEEEee
Confidence            999996 22   2677655   68999999997544

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=0.00069  Score=63.69  Aligned_cols=171  Identities=16%  Similarity=0.234  Sum_probs=105.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     +..|++++..+  ..+++. +++..+-.  |=       +|.+--
T Consensus        49 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p  118 (287)
T PRK14181         49 KKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--KD-------VDGLHP  118 (287)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--cC-------cccCCh
Confidence            34556788887655543 346777766552     24689998754  345443 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      .   ..|-...+........++.-++.++    ++                     .+.++.||++.|||-+. +|+.+|
T Consensus       119 ~---n~g~l~~g~~~~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla  170 (287)
T PRK14181        119 V---NMGKLLLGETDGFIPCTPAGIIELL----KY---------------------YEIPLHGRHVAIVGRSNIVGKPLA  170 (287)
T ss_pred             h---hHHHHhcCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            1   0111111221123455565555443    11                     13589999999999965 699999


Q ss_pred             HHHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh
Q 019328          182 RMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       182 ~~l~~a~----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~  257 (342)
                      .+|. .-    ++.|..+..+                            ..++.+.+++||+|+.+++-    .+++..+
T Consensus       171 ~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ADIvV~AvG~----p~~i~~~  217 (287)
T PRK14181        171 ALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEILKTADIIIAAIGV----PLFIKEE  217 (287)
T ss_pred             HHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHH
Confidence            9984 44    7888876432                            14788999999999999983    3578777


Q ss_pred             HHccCCCCcEEEecCCCc
Q 019328          258 RLATMKKEAILVNCSRGP  275 (342)
Q Consensus       258 ~l~~mk~gailIN~sRG~  275 (342)
                      .+   |+|+++||+|--.
T Consensus       218 ~i---k~GavVIDvGin~  232 (287)
T PRK14181        218 MI---AEKAVIVDVGTSR  232 (287)
T ss_pred             Hc---CCCCEEEEecccc
Confidence            75   7999999998654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.93  E-value=3.3e-05  Score=73.78  Aligned_cols=98  Identities=21%  Similarity=0.263  Sum_probs=63.9

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      +.|++|+|+|.|.||+.+++.+ +..| .+|++++|++... ..+...++.          ......++.+.+.++|+|+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~g~----------~~~~~~~~~~~l~~aDvVi  243 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKELGG----------NAVPLDELLELLNEADVVI  243 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHcCC----------eEEeHHHHHHHHhcCCEEE
Confidence            7899999999999999999997 4555 5799999987542 222222211          1111235678889999999


Q ss_pred             EcCCCCcccccccCHhHHccC-CCCcEEEecCCC
Q 019328          242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRG  274 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~m-k~gailIN~sRG  274 (342)
                      .+.|... .+.++ +..++.. +++.++|+.+..
T Consensus       244 ~at~~~~-~~~~~-~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         244 SATGAPH-YAKIV-ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             ECCCCCc-hHHHH-HHHHhhCCCCCeEEEEeCCC
Confidence            9999443 22222 2233222 357788888753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.92  E-value=3e-05  Score=72.15  Aligned_cols=97  Identities=22%  Similarity=0.270  Sum_probs=61.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..+|||||+|+||+++++.|.+ -+    -++++++|+....                    ......+..+++.+||+|
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~-~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V   61 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIEN-SNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII   61 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHh-CCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence            3589999999999999999743 33    2589998865320                    011235677888999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                      ++|+| ...++.++. +....++++ .+|.+.-|-  ..+.+.+.+.
T Consensus        62 ilavk-p~~~~~vl~-~i~~~l~~~-~iIS~~aGi--~~~~l~~~~~  103 (260)
T PTZ00431         62 VLAVK-PDLAGKVLL-EIKPYLGSK-LLISICGGL--NLKTLEEMVG  103 (260)
T ss_pred             EEEeC-HHHHHHHHH-HHHhhccCC-EEEEEeCCc--cHHHHHHHcC
Confidence            99998 334444443 333345554 455554443  3555555553

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=0.00042  Score=65.50  Aligned_cols=171  Identities=15%  Similarity=0.183  Sum_probs=104.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|++++....++ ..+++++.+.+..     ..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~  123 (297)
T PRK14167         54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KD-------VDGFHP  123 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence            34556788887655543 3567777665531     3689998754  344443 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++=                         ..+.++.||++.|||-+ .+|+.+|
T Consensus       124 ~---n~g~l~~g~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla  174 (297)
T PRK14167        124 E---NVGRLVAGDAR-FKPCTPHGIQKLLA-------------------------AAGVDTEGADVVVVGRSDIVGKPMA  174 (297)
T ss_pred             h---hhHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCcccHHHHH
Confidence            0   01111112222 34556665554441                         12357999999999996 5699999


Q ss_pred             HHHHhcC---CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH
Q 019328          182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       182 ~~l~~a~---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~  258 (342)
                      .+|.+.+   ++.|..+...                            ..++.+..++||+|+.++--    .+++..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~  222 (297)
T PRK14167        175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAGV----PELIDGSM  222 (297)
T ss_pred             HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            9985443   7888876431                            13688899999999999762    34777766


Q ss_pred             HccCCCCcEEEecCCCc
Q 019328          259 LATMKKEAILVNCSRGP  275 (342)
Q Consensus       259 l~~mk~gailIN~sRG~  275 (342)
                      +   |+|+++||+|--.
T Consensus       223 i---k~gaiVIDvGin~  236 (297)
T PRK14167        223 L---SEGATVIDVGINR  236 (297)
T ss_pred             c---CCCCEEEEccccc
Confidence            5   7999999998544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.92  E-value=6.3e-05  Score=71.96  Aligned_cols=95  Identities=19%  Similarity=0.188  Sum_probs=63.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++++|||.|.+|+.+++.+...++ -+|.+|+|++++ .+.+.+.+.    ..   +.......++++++++||+|+.
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~~----~~---g~~~~~~~~~~~av~~aDIVi~  195 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAELR----AQ---GFDAEVVTDLEAAVRQADIISC  195 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHH----hc---CCceEEeCCHHHHHhcCCEEEE
Confidence            46899999999999999986533345 579999998764 333333221    10   1112234688999999999988


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +.|.+   .-++..+   .++||+.+.-++
T Consensus       196 aT~s~---~pvl~~~---~l~~g~~i~~ig  219 (314)
T PRK06141        196 ATLST---EPLVRGE---WLKPGTHLDLVG  219 (314)
T ss_pred             eeCCC---CCEecHH---HcCCCCEEEeeC
Confidence            87743   4556554   468998544444

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.91  E-value=5.1e-05  Score=72.95  Aligned_cols=95  Identities=18%  Similarity=0.235  Sum_probs=66.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -+++||||.|.+|+..++.+...+. -+|.+|||+.++. +.+.+.+.    .   .+.......+.++++++||+|+.|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~~~----~---~g~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALRAS----D---YEVPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHHH----h---hCCcEEEeCCHHHHhccCCEEEEe
Confidence            4789999999999998776533333 5799999998653 23322221    1   111123357899999999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +|.   +.-++..+.   +|||+.+.++|.
T Consensus       200 T~s---~~P~~~~~~---l~~g~~v~~vGs  223 (325)
T TIGR02371       200 TPS---RKPVVKADW---VSEGTHINAIGA  223 (325)
T ss_pred             cCC---CCcEecHHH---cCCCCEEEecCC
Confidence            874   345565554   499999999984

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=0.00057  Score=64.58  Aligned_cols=171  Identities=20%  Similarity=0.203  Sum_probs=106.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.   .  ..|++++..+  ..+++. +++..+-.  |       -+|.+.-
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (297)
T PRK14186         55 KACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--K-------DADGLHP  124 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            34556788887655433 356777766553   1  3689998754  344443 33333221  2       1222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      ..   .|=...+.++ ....++.-++.++=                         ..+.++.||++.|||-+ .+|+.+|
T Consensus       125 ~n---~g~l~~~~~~-~~PcTp~aii~lL~-------------------------~~~i~l~Gk~vvVIGrS~iVGkPla  175 (297)
T PRK14186        125 LN---LGRLVKGEPG-LRSCTPAGVMRLLR-------------------------SQQIDIAGKKAVVVGRSILVGKPLA  175 (297)
T ss_pred             hh---HHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence            11   1111122222 34455555554431                         12358999999999995 5699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..+...                            ..++.+..++||+|+.+++-    .+++..+.+  
T Consensus       176 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~i--  220 (297)
T PRK14186        176 LML-LAANATVTIAHSR----------------------------TQDLASITREADILVAAAGR----PNLIGAEMV--  220 (297)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence            998 5779999877432                            13788999999999999983    356777765  


Q ss_pred             CCCCcEEEecCCCcc
Q 019328          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~gailIN~sRG~~  276 (342)
                       |+|+++||+|--.+
T Consensus       221 -k~gavVIDvGin~~  234 (297)
T PRK14186        221 -KPGAVVVDVGIHRL  234 (297)
T ss_pred             -CCCCEEEEeccccc
Confidence             79999999986553

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=0.00059  Score=64.00  Aligned_cols=171  Identities=19%  Similarity=0.265  Sum_probs=105.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+.     +.+|++++..+  ..+++. +++..+-.  |=|    -|+..+.+
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDV----DGl~~~N~  125 (282)
T PRK14166         53 KACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDV----DGFHPINV  125 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCc----ccCChhhh
Confidence            34556788877655433 356777776653     24689998754  344443 33333221  211    12211111


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      -... .|    ..++ ....++.-++.++=    +                     .+.++.||++.|||-+. +|+.+|
T Consensus       126 g~l~-~g----~~~~-~~PcTp~avi~lL~----~---------------------y~i~l~Gk~vvVvGrS~iVGkPla  174 (282)
T PRK14166        126 GYLN-LG----LESG-FLPCTPLGVMKLLK----A---------------------YEIDLEGKDAVIIGASNIVGRPMA  174 (282)
T ss_pred             HHHh-cC----CCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            1111 01    0122 34556666554441    1                     23589999999999964 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..+..+                            ..++.+..++||+|+.++.-    .+++..+.+  
T Consensus       175 ~lL-~~~~atVt~chs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~v--  219 (282)
T PRK14166        175 TML-LNAGATVSVCHIK----------------------------TKDLSLYTRQADLIIVAAGC----VNLLRSDMV--  219 (282)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence            998 5678999877542                            13688999999999999883    456777765  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       220 -k~GavVIDvGin~  232 (282)
T PRK14166        220 -KEGVIVVDVGINR  232 (282)
T ss_pred             -CCCCEEEEecccc
Confidence             7999999998433

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=0.00037  Score=65.80  Aligned_cols=172  Identities=16%  Similarity=0.181  Sum_probs=103.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+..     ..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        56 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~~  125 (297)
T PRK14168         56 KTAHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--KD-------VDGFHP  125 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence            34556788876654433 3577777765531     3689998754  344443 33332221  21       222111


Q ss_pred             hHHHhCCceEEcCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHH
Q 019328          103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAY  180 (342)
Q Consensus       103 ~~a~~~gI~v~n~p-~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~v  180 (342)
                      .   ..|-...+.. ......++.-++.++-                         ..+.++.||++.|||-+ .+|+.+
T Consensus       126 ~---n~g~l~~~~~~~~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPl  177 (297)
T PRK14168        126 V---NVGRLMIGGDEVKFLPCTPAGIQEMLV-------------------------RSGVETSGAEVVVVGRSNIVGKPI  177 (297)
T ss_pred             h---hHHHHhcCCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcccHHH
Confidence            0   0111111110 1234555655554441                         12458999999999995 579999


Q ss_pred             HHHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh
Q 019328          181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       181 A~~l~~a---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~  257 (342)
                      |.+|.+.   .++.|..+...                            ..++.+.+++||+|+.++.-    .+++..+
T Consensus       178 a~lL~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~  225 (297)
T PRK14168        178 ANMMTQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAAGV----PNLVKPE  225 (297)
T ss_pred             HHHHHhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEecCC----cCccCHH
Confidence            9998432   27888876432                            13688889999999999862    3567777


Q ss_pred             HHccCCCCcEEEecCCCc
Q 019328          258 RLATMKKEAILVNCSRGP  275 (342)
Q Consensus       258 ~l~~mk~gailIN~sRG~  275 (342)
                      .+   |+|+++||+|.-.
T Consensus       226 ~i---k~gavVIDvGin~  240 (297)
T PRK14168        226 WI---KPGATVIDVGVNR  240 (297)
T ss_pred             Hc---CCCCEEEecCCCc
Confidence            65   7999999998544

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.89  E-value=4.7e-05  Score=75.83  Aligned_cols=97  Identities=22%  Similarity=0.281  Sum_probs=66.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|++++|+|.|.||+.+++.| ...|+ +|++++|++... ..+...++       .   ......++.+.+.++|+|
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~g-------~---~~~~~~~~~~~l~~aDvV  246 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEFG-------G---EAIPLDELPEALAEADIV  246 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHcC-------C---cEeeHHHHHHHhccCCEE
Confidence            47899999999999999999997 68897 899999987542 22222221       0   011124566778899999


Q ss_pred             EEcCCCCcccccccCHhHHccC-----CCCcEEEecCC
Q 019328          241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~m-----k~gailIN~sR  273 (342)
                      +.+.|.   ...++..+.++.+     +++.++|+.+-
T Consensus       247 I~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        247 ISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            999773   3445666666543     24567777653

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=0.00071  Score=63.49  Aligned_cols=169  Identities=12%  Similarity=0.177  Sum_probs=103.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+.+..++ ..+++++.+.+..     ..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~  123 (282)
T PRK14180         54 KACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KD-------VDGFHP  123 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--cc-------ccccCh
Confidence            34556788887654433 3466777655531     3679998754  344443 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+........++.-++.++=                         ..+.++.||++.|||-+ .+|+.+|
T Consensus       124 ~---n~g~l~~g~~~~~~PcTp~aii~lL~-------------------------~y~i~l~Gk~vvViGrS~~VGkPla  175 (282)
T PRK14180        124 T---NVGRLQLRDKKCLESCTPKGIMTMLR-------------------------EYGIKTEGAYAVVVGASNVVGKPVS  175 (282)
T ss_pred             h---hHHHHhcCCCCCcCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            0   01111111101134455665554431                         12358999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..+...                            ..++.+..++||+|+.+++-    .++|..+.+  
T Consensus       176 ~lL-~~~~ATVt~chs~----------------------------T~dl~~~~k~ADIvIsAvGk----p~~i~~~~v--  220 (282)
T PRK14180        176 QLL-LNAKATVTTCHRF----------------------------TTDLKSHTTKADILIVAVGK----PNFITADMV--  220 (282)
T ss_pred             HHH-HHCCCEEEEEcCC----------------------------CCCHHHHhhhcCEEEEccCC----cCcCCHHHc--
Confidence            998 5678999887542                            13688889999999999983    456777665  


Q ss_pred             CCCCcEEEecCC
Q 019328          262 MKKEAILVNCSR  273 (342)
Q Consensus       262 mk~gailIN~sR  273 (342)
                       |+|+++||+|-
T Consensus       221 -k~gavVIDvGi  231 (282)
T PRK14180        221 -KEGAVVIDVGI  231 (282)
T ss_pred             -CCCcEEEEecc
Confidence             79999999984

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.86  E-value=0.00032  Score=70.76  Aligned_cols=148  Identities=15%  Similarity=0.162  Sum_probs=91.1

Q ss_pred             CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhh--------hhhhccCCCCCccccccCCHHHHhhc
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      .+|+|||+|.+|..+|-.|+. +.|.+|++||.++.+. +....+.        .+.+.. .. .-......+.++.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~-~~-~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQ-CR-GKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHH-hh-cCCEEEEcCHHHHHhc
Confidence            479999999999999998853 4579999999887642 2211110        000000 00 0001223567788999


Q ss_pred             CCEEEEcCCCCcccc------------ccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee-cCCC
Q 019328          237 ADVISLHPVLDKTTY------------HLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFED  301 (342)
Q Consensus       237 sDiV~l~lplt~~t~------------~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD-V~~~  301 (342)
                      ||++++|+| ||...            .+.  -++.-+.+++|.++|.-|.-.+=-++.+.+-|.+.. .|.-+. +|.+
T Consensus        79 advi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~P  156 (473)
T PLN02353         79 ADIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNP  156 (473)
T ss_pred             CCEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECC
Confidence            999999997 33211            111  134556679999999999877776778888777531 121111 3456


Q ss_pred             CCCCC----CCccCCCceEEc
Q 019328          302 EPYMK----PGLSEMKNAIVV  318 (342)
Q Consensus       302 EP~~~----~~L~~~~nvi~T  318 (342)
                      |=+.+    ..+...|+|++-
T Consensus       157 Erl~~G~a~~d~~~p~riViG  177 (473)
T PLN02353        157 EFLAEGTAIEDLFKPDRVLIG  177 (473)
T ss_pred             CccCCCCcccccCCCCEEEEc
Confidence            65432    357788888753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.83  E-value=9.9e-05  Score=71.06  Aligned_cols=120  Identities=15%  Similarity=0.160  Sum_probs=73.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC-----ccccccCCHHHHhhcCCEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----VTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~ell~~sDiV  240 (342)
                      ++|+|||.|.||..+|..| ...|.+|.+|+|....  +.... .+..........     .......+. +.++.+|+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRARIG--DELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHHHH--HHHHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            5799999999999999998 4668999999986432  11111 111000000000     001112344 567899999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      ++++|. ++....+ ++....++++.++|.+.-| +-..+.+.+.+...++..
T Consensus        78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~  127 (341)
T PRK08229         78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA  127 (341)
T ss_pred             EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence            999984 4445444 4455667889999888654 444566777776655444

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.82  E-value=0.0012  Score=63.75  Aligned_cols=79  Identities=20%  Similarity=0.281  Sum_probs=64.3

Q ss_pred             cccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .++.||++.|||-+ .+|+.+|.+| ..-++.|..+...                            ..++.+..++||+
T Consensus       227 i~l~GK~vvVIGRS~iVGkPLa~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADI  277 (364)
T PLN02616        227 VEIKGKRAVVIGRSNIVGMPAALLL-QREDATVSIVHSR----------------------------TKNPEEITREADI  277 (364)
T ss_pred             CCCCCCEEEEECCCccccHHHHHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCE
Confidence            58999999999995 5699999998 5778999887532                            1478899999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |+.++.    ..++|..+.+   |+|+++||+|--.
T Consensus       278 VIsAvG----kp~~i~~d~v---K~GAvVIDVGIn~  306 (364)
T PLN02616        278 IISAVG----QPNMVRGSWI---KPGAVVIDVGINP  306 (364)
T ss_pred             EEEcCC----CcCcCCHHHc---CCCCEEEeccccc
Confidence            999987    3456777765   7999999998544

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.82  E-value=8.9e-05  Score=70.11  Aligned_cols=121  Identities=11%  Similarity=0.181  Sum_probs=73.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|+|.|.||..+|..|+ ..|.+|..|+| .+. .+...+ .+....... ..........+.+++...+|+|++++
T Consensus         1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PKR-AKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HHH-HHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence            37999999999999999985 56899999998 432 222211 111111100 00000111345667778999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      |. .++...+ +.....++++.++|.+.-| +-.++.+.+.+.+.++.+
T Consensus        77 k~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~  122 (305)
T PRK12921         77 KA-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG  122 (305)
T ss_pred             cc-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence            94 3344333 3334446778888877665 444677777776655543

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.80  E-value=0.00092  Score=64.17  Aligned_cols=172  Identities=16%  Similarity=0.261  Sum_probs=106.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|++.+....++ ..+++|+.+.+..     ..|++++..+  ..+++.. ++...-.  |=|    -|+....+
T Consensus       109 K~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDV----DGl~p~N~  181 (345)
T PLN02897        109 KACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDV----DGFHPLNV  181 (345)
T ss_pred             HHHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCc----cCCCHHHH
Confidence            34556788877655443 3567777766531     4689998754  3455543 3332211  211    12211111


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      -.....|-    .++ ....++.-++.++-                         ..+.++.||++.|||-+. +|+.+|
T Consensus       182 G~L~~~~~----~~~-~~PCTp~avi~LL~-------------------------~~~i~l~GK~vvVIGRS~iVGkPla  231 (345)
T PLN02897        182 GNLAMRGR----EPL-FVSCTPKGCVELLI-------------------------RSGVEIAGKNAVVIGRSNIVGLPMS  231 (345)
T ss_pred             HHHhcCCC----CCC-CcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccccHHHH
Confidence            11111000    122 34556666655541                         123589999999999965 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..+...                            ..++++..++||+|+.++.-    .+++..+.+  
T Consensus       232 ~LL-~~~~ATVTicHs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~v~~d~v--  276 (345)
T PLN02897        232 LLL-QRHDATVSTVHAF----------------------------TKDPEQITRKADIVIAAAGI----PNLVRGSWL--  276 (345)
T ss_pred             HHH-HHCCCEEEEEcCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence            997 5678999876432                            13688899999999999883    456777765  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       277 -k~GavVIDVGin~  289 (345)
T PLN02897        277 -KPGAVVIDVGTTP  289 (345)
T ss_pred             -CCCCEEEEccccc
Confidence             7999999998544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.79  E-value=0.00016  Score=68.99  Aligned_cols=96  Identities=10%  Similarity=0.060  Sum_probs=68.4

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ...++++|+|.|.+|+..++.+...++. +|.+|+|++.+ .+.+.+.+..    .   ..... ..+.++++++||+|+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~~~----~---~~~~~-~~~~~~av~~aDiVi  193 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHARA----L---GPTAE-PLDGEAIPEAVDLVV  193 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHHHh----c---CCeeE-ECCHHHHhhcCCEEE
Confidence            3568999999999999999987444564 69999999764 3344433321    0   11111 468899999999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .+.|.+   .-+|..    .+|||+.++.+|.-
T Consensus       194 taT~s~---~Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        194 TATTSR---TPVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             EccCCC---CceeCc----cCCCCCEEEecCCC
Confidence            998844   355543    36999999999843

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.0014  Score=61.75  Aligned_cols=171  Identities=16%  Similarity=0.180  Sum_probs=104.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+.     +..|++++..+  ..+++. +++..+-.  |       -+|.+.-
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~  123 (293)
T PRK14185         54 KACEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--K-------DVDGFHP  123 (293)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence            34556788886655443 346777775543     14689998754  344443 33333221  2       1222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      ..   .|-...+.++ ....++.-++.++=                         ..+.++.||++.|||-+ .+|+.+|
T Consensus       124 ~N---~g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~GK~vvViGrS~iVGkPla  174 (293)
T PRK14185        124 IN---VGRMSIGLPC-FVSATPNGILELLK-------------------------RYHIETSGKKCVVLGRSNIVGKPMA  174 (293)
T ss_pred             hh---HHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence            11   1111112233 34566666554441                         11347999999999995 5699999


Q ss_pred             HHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH
Q 019328          182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       182 ~~l~~a---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~  258 (342)
                      .+|.+.   +++.|..+...                            ..++.+..++||+|+.++.-    .++|..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~  222 (293)
T PRK14185        175 QLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM  222 (293)
T ss_pred             HHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            998432   37888876432                            14788899999999999883    35677665


Q ss_pred             HccCCCCcEEEecCCCc
Q 019328          259 LATMKKEAILVNCSRGP  275 (342)
Q Consensus       259 l~~mk~gailIN~sRG~  275 (342)
                      +   |+|+++||+|--.
T Consensus       223 v---k~gavVIDvGin~  236 (293)
T PRK14185        223 V---KEGAVVIDVGTTR  236 (293)
T ss_pred             c---CCCCEEEEecCcc
Confidence            4   7999999998544

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.77  E-value=0.00018  Score=68.76  Aligned_cols=99  Identities=20%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +++||+|.|..|+.-++.++.-++. +|.+|+|++.. .++|.+.+.    .   .........+.++++++||+|+.+.
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~~~----~---~~~~v~~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAARLR----D---LGVPVVAVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHHHH----C---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHhhc----c---ccccceeccchhhhcccCCEEEEcc
Confidence            5899999999999999987555665 79999999754 344444332    1   1333445679999999999999998


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      |.+..+ -++..+   .+|||+.++.++....
T Consensus       201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence            855433 566655   4689999999987644

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.76  E-value=0.00016  Score=65.52  Aligned_cols=105  Identities=14%  Similarity=0.129  Sum_probs=63.2

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+||| .|.||+.+|+.| ...|.+|.+++|+++.. +.....+...+...+. ... ....+..+.++++|+|++++
T Consensus         1 MkI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~-~~~~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIK-VTGADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-Cce-EEEeChHHHHhcCCEEEEEC
Confidence            3799997 999999999998 46789999999986542 2211111000000000 000 11236678899999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      |.. ....++ ++.-..++ +.++|+++-|--.
T Consensus        77 p~~-~~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        77 PWD-HVLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             CHH-HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            943 233333 22222343 5899999777443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.75  E-value=0.00027  Score=67.06  Aligned_cols=135  Identities=13%  Similarity=0.205  Sum_probs=93.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~l~  243 (342)
                      -++|||||+|++|+-+|+.+ ...|..++.+||..-...   ...|            +....+.+.+++ .++|+|.+|
T Consensus        52 tl~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssa---a~~y------------g~~~ft~lhdlcerhpDvvLlc  115 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSA---AEKY------------GSAKFTLLHDLCERHPDVVLLC  115 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHH---HHHh------------cccccccHHHHHhcCCCEEEEE
Confidence            35799999999999999997 578999999999753211   1122            223356677766 578999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CC---CCccCCCceEEc
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK---PGLSEMKNAIVV  318 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~---~~L~~~~nvi~T  318 (342)
                      +.. ..+..++-.--++++|.|++++++-.-....-+++.+-|-+.      .|....-|.  |+   +....+|=|+.-
T Consensus       116 tsi-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydk  188 (480)
T KOG2380|consen  116 TSI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDK  188 (480)
T ss_pred             ehh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEE
Confidence            763 234444444456778999999999888888888888888764      355555553  22   234457777766


Q ss_pred             CCCC
Q 019328          319 PHIA  322 (342)
Q Consensus       319 PHia  322 (342)
                      -.++
T Consensus       189 vRig  192 (480)
T KOG2380|consen  189 VRIG  192 (480)
T ss_pred             eecc
Confidence            5555

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.74  E-value=0.00026  Score=62.65  Aligned_cols=96  Identities=20%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             cccccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc----cCCHHHH
Q 019328          159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR----ASSMDEV  233 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~el  233 (342)
                      .+.++.||++.|||-+. +|+++|..| ..-|+.|..+|.+.-..   |       .+... .......    ..++.+.
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~---~-------~~~~~-~~hs~t~~~~~~~~l~~~  123 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV---F-------TRGES-IRHEKHHVTDEEAMTLDC  123 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc---c-------ccccc-cccccccccchhhHHHHH
Confidence            46799999999999965 699999998 57799999986432110   0       00000 0000000    1127789


Q ss_pred             hhcCCEEEEcCCCCcccccc-cCHhHHccCCCCcEEEecCC
Q 019328          234 LREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR  273 (342)
Q Consensus       234 l~~sDiV~l~lplt~~t~~l-i~~~~l~~mk~gailIN~sR  273 (342)
                      +++||+|+.+++-    .++ +..+.+   |+|+++||+|-
T Consensus       124 ~~~ADIVIsAvG~----~~~~i~~d~i---k~GavVIDVGi  157 (197)
T cd01079         124 LSQSDVVITGVPS----PNYKVPTELL---KDGAICINFAS  157 (197)
T ss_pred             hhhCCEEEEccCC----CCCccCHHHc---CCCcEEEEcCC
Confidence            9999999999983    344 666665   79999999983

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.68  E-value=0.00031  Score=67.58  Aligned_cols=96  Identities=16%  Similarity=0.162  Sum_probs=66.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++++|||.|.+|+..++.++...+. +|.+|+|++++. +++.+.+.    ..  .+.....+.++++++++||+|++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~~----~~--~~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEIQ----SK--FNTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHHH----Hh--cCCcEEEeCCHHHHHhcCCEEEE
Confidence            467899999999999998775434555 688999997642 33333221    00  11112235688999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |.|..   .-++.    +.+|+|+.++.++.
T Consensus       199 aT~s~---~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        199 VTNAK---TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             ccCCC---CcchH----HhcCCCcEEEecCC
Confidence            99844   34443    56699999988865

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.67  E-value=0.00033  Score=62.06  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccc---cccCCHHHHhhc
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLRE  236 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~  236 (342)
                      .++.++++.|+|. |.+|+.+++.++ ..|.+|..++|+..+ .+.+.+.+..   ..+ .....   ....++.+.+++
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~-~~~~~~~~~~~~~~~~~~~~   97 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA---RFG-EGVGAVETSDDAARAAAIKG   97 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh---hcC-CcEEEeeCCCHHHHHHHHhc
Confidence            4688999999995 999999999974 678899999998643 2222221110   000 00100   112334577889


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      +|+|+.+.|....+  .+.  .-...+++.+++|+.+...++
T Consensus        98 ~diVi~at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~  135 (194)
T cd01078          98 ADVVFAAGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVG  135 (194)
T ss_pred             CCEEEECCCCCcee--chh--hhcccCceeEEEEccCCCCCC
Confidence            99999998855431  111  111345577888877766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.64  E-value=0.00019  Score=67.47  Aligned_cols=117  Identities=17%  Similarity=0.187  Sum_probs=73.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.++++.|+|.|.+|+.+++.| ...| .+|.+++|+.++. +...+.+..    ..  ....  ..++.+.+..+|+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~~----~~--~~~~--~~~~~~~~~~~Div  189 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFGA----LG--KAEL--DLELQEELADFDLI  189 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhhh----cc--ceee--cccchhccccCCEE
Confidence            67899999999999999999998 5889 6899999987542 222222210    00  0011  12445677899999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|..-....-...-.+..++++.+++++.=.+ ..+.=|.+|-+.|
T Consensus       190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P-~~T~ll~~A~~~G  237 (278)
T PRK00258        190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP-LPTPFLAWAKAQG  237 (278)
T ss_pred             EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC-CCCHHHHHHHHCc
Confidence            99999654321111111234567888888886533 3444444444444

>PRK06046 alanine dehydrogenase; Validated

Probab=97.61  E-value=0.00042  Score=66.67  Aligned_cols=95  Identities=20%  Similarity=0.287  Sum_probs=64.9

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -+++||||.|.+|+..++.++...+. +|.+|||+.... +.+.+.+..      ..+.....+.+++++++ +|+|++|
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~~------~~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMSS------VVGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHHh------hcCceEEEeCCHHHHhh-CCEEEEe
Confidence            46899999999999999887434565 577899997543 333322210      01111223568899997 9999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|.+   .-+|..+.   +|+|+.+..+|.
T Consensus       201 Tps~---~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        201 TPSR---KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             cCCC---CcEecHHH---cCCCCEEEecCC
Confidence            9843   45666654   489999888873

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.61  E-value=0.00052  Score=64.72  Aligned_cols=129  Identities=15%  Similarity=0.136  Sum_probs=76.0

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      +|+|||.|.||..+|..|+ ..|.+|..++|+.+.. +.... .+.... .+..........+.+++ +.+|+|++++|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAHL-DALNE-NGLRLE-DGEITVPVLAADDPAEL-GPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHHH-HHHHH-cCCccc-CCceeecccCCCChhHc-CCCCEEEEeccc
Confidence            6999999999999999984 6689999999865431 22111 111010 01000000123456665 899999999994


Q ss_pred             CcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEE--eecCCCCC
Q 019328          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG--LDVFEDEP  303 (342)
Q Consensus       247 t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaa--lDV~~~EP  303 (342)
                       .++...+ +.....+.+++.+|...-| +-.++.+.+.+....+.++.  ..++..+|
T Consensus        77 -~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p  132 (304)
T PRK06522         77 -YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP  132 (304)
T ss_pred             -ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence             3344432 3344456677888888777 33356666666655554432  23334455

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.60  E-value=0.00046  Score=66.57  Aligned_cols=102  Identities=28%  Similarity=0.372  Sum_probs=72.2

Q ss_pred             cccccCCCEEEEEcc-ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       159 ~g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      .|.++.||++.|+|. |.||+.+++.|+...| .+++.++|+... ......++.            .....++++.+.+
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el~------------~~~i~~l~~~l~~  215 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAELG------------GGKILSLEEALPE  215 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHhc------------cccHHhHHHHHcc
Confidence            345799999999998 8999999999853456 489899987543 222111110            0112468899999


Q ss_pred             CCEEEEcCCCCccccc-ccCHhHHccCCCCcEEEecCCCccCCH
Q 019328          237 ADVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       237 sDiV~l~lplt~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~  279 (342)
                      +|+|+.+.-.   ... .++.+.+   +++.++|+.|+-.=||.
T Consensus       216 aDiVv~~ts~---~~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        216 ADIVVWVASM---PKGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CCEEEECCcC---CcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence            9998877542   234 3777654   79999999999887775

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.59  E-value=0.00033  Score=65.75  Aligned_cols=170  Identities=16%  Similarity=0.217  Sum_probs=105.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++++.+.+.     +..|++++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        56 k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KD-------VDGl~~  125 (284)
T PRK14177         56 KACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KD-------VDGVTT  125 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cccCCh
Confidence            44566788877654433 346777766553     14689998754  234433 33333221  21       222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC-hHHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G-~IG~~vA  181 (342)
                      .   ..|-...+.+. ....++.-++.++=                         ..+.++.||++.|||-+ .+|+.+|
T Consensus       126 ~---n~g~l~~g~~~-~~PcTp~avi~ll~-------------------------~y~i~l~Gk~vvViGrS~iVGkPla  176 (284)
T PRK14177        126 L---SFGKLSMGVET-YLPCTPYGMVLLLK-------------------------EYGIDVTGKNAVVVGRSPILGKPMA  176 (284)
T ss_pred             h---hHHHHHcCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            1   11111122222 34455655554331                         01358999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ..| ..-|+.|..++.+                            ..++.+..++||+|+.++.-    .+++..+.+  
T Consensus       177 ~lL-~~~~atVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~i--  221 (284)
T PRK14177        177 MLL-TEMNATVTLCHSK----------------------------TQNLPSIVRQADIIVGAVGK----PEFIKADWI--  221 (284)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEeCCC----cCccCHHHc--
Confidence            998 5778999987642                            13688899999999999883    456777665  


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                       |+|+++||+|--.
T Consensus       222 -k~gavVIDvGin~  234 (284)
T PRK14177        222 -SEGAVLLDAGYNP  234 (284)
T ss_pred             -CCCCEEEEecCcc
Confidence             7999999998533

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.58  E-value=0.00061  Score=65.55  Aligned_cols=96  Identities=11%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++++|||.|.+|+..++.++..++. +|.+|+|+..+ .+++...+..      ..+.......++++.+++||+|+.
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a~~~~~------~~g~~v~~~~~~~~av~~aDiVvt  200 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALALQLSS------LLGIDVTAATDPRAAMSGADIIVT  200 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh------hcCceEEEeCCHHHHhccCCEEEE
Confidence            357999999999999999987434674 69999999764 2333332210      001122234689999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +.|.+   .-+|..+.   +|+|+.+..++
T Consensus       201 aT~s~---~p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       201 TTPSE---TPILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             ecCCC---CcEecHHH---cCCCcEEEeeC
Confidence            98853   35666554   58998888776

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.58  E-value=0.00023  Score=68.94  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019328          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (342)
Q Consensus       177 G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~  256 (342)
                      |..+|..|+ ..|.+|++|||+.....+...+.    +...+     .....+..+++++||+|++++|....++.++ .
T Consensus        32 G~~MA~~La-~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~  100 (342)
T PRK12557         32 GSRMAIEFA-EAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K  100 (342)
T ss_pred             HHHHHHHHH-hCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence            788999874 66899999999875321101110    11111     2234578888999999999999655467766 4


Q ss_pred             hHHccCCCCcEEEecCCCccCCH-HHHHHHHH
Q 019328          257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK  287 (342)
Q Consensus       257 ~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~  287 (342)
                      .....+++|+++||++.+..... +.+.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            67788899999999999986655 56666664

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.57  E-value=0.00016  Score=67.59  Aligned_cols=96  Identities=26%  Similarity=0.321  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      -|.||||+|||||.-|+.=|..| +-.|.+|++=-|..+...+.           +..  .++ ...+.+|+.++||+|.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k-----------A~~--dGf-~V~~v~ea~k~ADvim   79 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK-----------AKE--DGF-KVYTVEEAAKRADVVM   79 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH-----------HHh--cCC-EeecHHHHhhcCCEEE
Confidence            58999999999999999999998 78888877544433221110           001  112 2468999999999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      +.+|... -..++.++.-..||.|+.|- .|.|
T Consensus        80 ~L~PDe~-q~~vy~~~I~p~Lk~G~aL~-FaHG  110 (338)
T COG0059          80 ILLPDEQ-QKEVYEKEIAPNLKEGAALG-FAHG  110 (338)
T ss_pred             EeCchhh-HHHHHHHHhhhhhcCCceEE-eccc
Confidence            9999433 23444556667788887553 3444

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.55  E-value=0.00087  Score=61.19  Aligned_cols=119  Identities=21%  Similarity=0.291  Sum_probs=71.8

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCC---------hhhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .++.|+++.|.|+|++|+.+|+.| ..+|++|++. |.+         ...+........+...      ........+.
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~------~~~~~~~~~~   99 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL------GFPGAERITN   99 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc------cCCCceecCC
Confidence            478999999999999999999998 6899999954 431         1111111111111100      0000001122


Q ss_pred             HHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       231 ~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      ++++ ..||+++-|.+     .+.++.+...+++ =.+++--+-+++ . ..-.+.|+++.+.-+
T Consensus       100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~  156 (227)
T cd01076         100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLVV  156 (227)
T ss_pred             ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEE
Confidence            3322 47899988865     4557888888887 346666666776 3 555577777765443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.55  E-value=0.0011  Score=70.18  Aligned_cols=154  Identities=15%  Similarity=0.164  Sum_probs=94.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--H-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--V-TAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~  235 (342)
                      ++|+|||.|.||..+|..++...|++|+.||++++......  . ..+....+......       .......+++ .++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence            58999999999999999864346999999999875321110  0 00111111100000       0111234664 579


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv  315 (342)
                      .||+|+=++|-+.+.++-+-++.=+.++++++|...+.+  +....|.++++. +-.-.++--|.+  +..-||.+   |
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP--~~~~~lVE---v  455 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSP--VEKMPLVE---V  455 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCc--cccCceEE---E
Confidence            999999999999998888888888889999888644333  445667777753 334555555532  21223433   6


Q ss_pred             EEcCCCCCCcHHH
Q 019328          316 IVVPHIASASKWT  328 (342)
Q Consensus       316 i~TPHia~~t~~~  328 (342)
                      +-+|+.+-.|.+.
T Consensus       456 v~g~~T~~~~~~~  468 (699)
T TIGR02440       456 IPHAGTSEQTIAT  468 (699)
T ss_pred             eCCCCCCHHHHHH
Confidence            6667655433333

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.55  E-value=0.00035  Score=67.63  Aligned_cols=107  Identities=20%  Similarity=0.311  Sum_probs=66.5

Q ss_pred             EEEEEccChHHHHHHHHHHh-c------CCcEEEEEcCCh---hhHHHHHHhhhhhhhccC----C-CCCccccccCCHH
Q 019328          167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKAN----G-EQPVTWKRASSMD  231 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~-a------~g~~V~~~d~~~---~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~  231 (342)
                      +|+|||.|+.|.++|..|+. +      |+.+|..|.+..   .....+   .+.......    + ..+.......+++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~---~in~~~~n~~ylpgi~Lp~~i~at~dl~   77 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTE---IINTTHENVKYLPGIKLPANLVAVPDLV   77 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHH---HHHhcCCCccccCCCcCCCCeEEECCHH
Confidence            58999999999999998753 3      448999998732   111111   111100000    0 0111122346899


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       232 ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      ++++.||+|++++|. ...+. +-.+.-..++++..+|+++-|=-.+
T Consensus        78 eal~~ADiIIlAVPs-~~i~~-vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        78 EAAKGADILVFVIPH-QFLEG-ICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             HHHhcCCEEEEECCh-HHHHH-HHHHHHhhcCCCCEEEEEeCCcccC
Confidence            999999999999992 22333 2344445678899999998885444

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.52  E-value=0.001  Score=70.53  Aligned_cols=154  Identities=17%  Similarity=0.142  Sum_probs=96.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~  235 (342)
                      ++|+|||.|.||..+|..++ ..|++|+.||++.+.....  .. ..+....+......       .......+++ .++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  391 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFE  391 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence            68999999999999999975 6699999999997642111  00 01111111100000       0111234664 469


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv  315 (342)
                      .||+|+=++|-..+.++-+-++.=+.++++++|...+.+  +....|.+++.. +-.-.++--|.+-+  .-||.+   |
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P~~--~~~lVE---v  463 (715)
T PRK11730        392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNPVH--RMPLVE---V  463 (715)
T ss_pred             CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCccc--ccceEE---e
Confidence            999999999999999988888888889999988654333  455667777753 33455555553322  223433   5


Q ss_pred             EEcCCCCCCcHHHH
Q 019328          316 IVVPHIASASKWTR  329 (342)
Q Consensus       316 i~TPHia~~t~~~~  329 (342)
                      +-+||.+-.|.+..
T Consensus       464 v~g~~T~~~~~~~~  477 (715)
T PRK11730        464 IRGEKTSDETIATV  477 (715)
T ss_pred             eCCCCCCHHHHHHH
Confidence            66666654444433

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.52  E-value=0.00046  Score=65.10  Aligned_cols=80  Identities=18%  Similarity=0.248  Sum_probs=65.0

Q ss_pred             ccccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          160 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 g~~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +.++.||++.|||-+ .+|+.+|..| ..-|+.|..+...                            ..++.+.+++||
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVt~chs~----------------------------T~~l~~~~~~AD  205 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLL-LGENCTVTTVHSA----------------------------TRDLADYCSKAD  205 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-hhCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            358999999999995 5799999998 5789999887542                            136889999999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +|+.++.-    .+++..+.+   |+|+++||+|--.
T Consensus       206 IvVsAvGk----p~~i~~~~i---k~gaiVIDVGin~  235 (294)
T PRK14187        206 ILVAAVGI----PNFVKYSWI---KKGAIVIDVGINS  235 (294)
T ss_pred             EEEEccCC----cCccCHHHc---CCCCEEEEecccc
Confidence            99999983    456777776   6999999998544

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.51  E-value=0.00042  Score=67.61  Aligned_cols=112  Identities=20%  Similarity=0.266  Sum_probs=66.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhc------CCcEEEEEcCChhhHHHHHHhhhhhhhc-----cCCCCCccccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQATRLEKFVTAYGQFLK-----ANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a------~g~~V~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~ell  234 (342)
                      ++|+|||.|..|.++|..|+..      ||.+|..|.++.........+.....-.     ..-..+.......++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            5899999999999999998533      4578888877653100000010000000     0001111222346888999


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHc--cCCCCcEEEecCCCccCCH
Q 019328          235 READVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~--~mk~gailIN~sRG~~vd~  279 (342)
                      +.||+|++++|  ++...-+-++.-.  .+++++++|+++-|=-.++
T Consensus        92 ~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         92 EDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             hcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence            99999999999  3322222223323  4666889999887754443

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.50  E-value=0.00054  Score=65.59  Aligned_cols=94  Identities=13%  Similarity=0.145  Sum_probs=67.7

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -+++||+|.|..++.-++.+...+.. +|.+|+|++.+. ++|.+..    +..   ........+.+++++.||+|+.+
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~~----~~~---~~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQYA----QAL---GFAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----Hhc---CCcEEEECCHHHHhcCCCEEEEe
Confidence            56899999999999999886544444 799999998653 3333221    111   12233357899999999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .|   .+.-+|..+.   +|||+.++.+|
T Consensus       200 T~---s~~P~~~~~~---l~~G~hi~~iG  222 (315)
T PRK06823        200 TP---SREPLLQAED---IQPGTHITAVG  222 (315)
T ss_pred             cC---CCCceeCHHH---cCCCcEEEecC
Confidence            76   4456676654   57999999997

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.50  E-value=0.0016  Score=69.15  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=95.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~  235 (342)
                      ++|+|||.|.||..+|..++...|++|..||++++.....  .. ..+....+......       .......++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            6899999999999999987436799999999987532111  00 01111111111000       011123456 4569


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv  315 (342)
                      .||+|+=++|-+.+.+.-+.++.=+.++|+++|...+.  -+....|.+.+.. +-.-.++--|.+  +.--||.+   |
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS--~l~i~~la~~~~~-p~r~ig~Hff~P--~~~~~lVE---v  460 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS--SLPIGQIAAAAAR-PEQVIGLHYFSP--VEKMPLVE---V  460 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHHhcCc-ccceEEEecCCc--cccCceEE---E
Confidence            99999999999999888888888888999999975443  3556777777753 334556666632  21123333   5


Q ss_pred             EEcCCCCCCcHHH
Q 019328          316 IVVPHIASASKWT  328 (342)
Q Consensus       316 i~TPHia~~t~~~  328 (342)
                      +-+|+.+-.|.+.
T Consensus       461 v~g~~Ts~~~~~~  473 (708)
T PRK11154        461 IPHAKTSAETIAT  473 (708)
T ss_pred             ECCCCCCHHHHHH
Confidence            6666554433333

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.48  E-value=0.00054  Score=64.75  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=65.1

Q ss_pred             ccccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 g~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +.++.||++.|||-+. +|+.+|..| ..-|+.|..+...                            ..++++.+++||
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~AD  212 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLL-LKADATVTVVHSR----------------------------TPDPESIVREAD  212 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCC
Confidence            3589999999999965 699999998 5679999887532                            136889999999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +|+.++.-    .++|..+.+   |+|+++||+|--.
T Consensus       213 Ivv~AvGk----~~~i~~~~v---k~gavVIDvGin~  242 (299)
T PLN02516        213 IVIAAAGQ----AMMIKGDWI---KPGAAVIDVGTNA  242 (299)
T ss_pred             EEEEcCCC----cCccCHHHc---CCCCEEEEeeccc
Confidence            99999873    367877775   7999999998544

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.46  E-value=0.00042  Score=64.52  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=64.8

Q ss_pred             cccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+|+||++.|||-++| |+.+|..| ..-++.|.++....                            .++.+..++||+
T Consensus       152 i~l~Gk~~vVVGrS~iVGkPla~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~ADI  202 (283)
T COG0190         152 IDLRGKNVVVVGRSNIVGKPLALLL-LNANATVTVCHSRT----------------------------KDLASITKNADI  202 (283)
T ss_pred             CCCCCCEEEEECCCCcCcHHHHHHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCE
Confidence            5899999999999876 99999998 57899998876431                            378888999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      |+.++-.    .++|..+.   .|+|+++|+++--.+-
T Consensus       203 vv~AvG~----p~~i~~d~---vk~gavVIDVGinrv~  233 (283)
T COG0190         203 VVVAVGK----PHFIKADM---VKPGAVVIDVGINRVN  233 (283)
T ss_pred             EEEecCC----cccccccc---ccCCCEEEecCCcccc
Confidence            9999862    35665444   5899999999865543

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.44  E-value=0.00046  Score=66.79  Aligned_cols=107  Identities=15%  Similarity=0.146  Sum_probs=64.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hh-hhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YG-QFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|||.|.+|..+|..|+ ..| .+..|.+++... +..... .. ..+......+.......++++.++.+|+|+++
T Consensus         8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~~-~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila   84 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAETA-DDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG   84 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHHH-HHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence            57999999999999999985 556 577777765432 111110 00 00000000011112345788889999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      +| +..++..+ ++....+++++.+|++.-|=-.
T Consensus        85 vp-s~~~~~vl-~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         85 VP-SHGFRGVL-TELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             eC-HHHHHHHH-HHHHhhcCCCCEEEEEEeCCcC
Confidence            99 33344433 3334456888889998886433

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.43  E-value=0.00067  Score=63.79  Aligned_cols=168  Identities=18%  Similarity=0.216  Sum_probs=103.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+.     +..|++++..+  ..+++.. ++..+-.  |       -+|.+.-
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~  123 (286)
T PRK14184         54 RACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHP  123 (286)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCH
Confidence            34566788887655443 356777776553     14689998754  3444432 3332211  2       1222211


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      ..   .|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||-+. +|+.+|
T Consensus       124 ~N---~g~l~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla  174 (286)
T PRK14184        124 EN---MGRLALGLPG-FRPCTPAGVMTLL----ER---------------------YGLSPAGKKAVVVGRSNIVGKPLA  174 (286)
T ss_pred             hh---HHHHhCCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            10   1111112233 3445555444333    11                     23589999999999965 699999


Q ss_pred             HHHHhc----CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh
Q 019328          182 RMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       182 ~~l~~a----~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~  257 (342)
                      ..| ..    -++.|..+..+                            ..++.+.+++||+|+.++.    ..++|.++
T Consensus       175 ~lL-~~~~~~~~AtVt~~hs~----------------------------t~~l~~~~~~ADIVI~AvG----~p~li~~~  221 (286)
T PRK14184        175 LML-GAPGKFANATVTVCHSR----------------------------TPDLAEECREADFLFVAIG----RPRFVTAD  221 (286)
T ss_pred             HHH-hCCcccCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecC----CCCcCCHH
Confidence            998 45    67888876532                            1368899999999999996    35678887


Q ss_pred             HHccCCCCcEEEecCC
Q 019328          258 RLATMKKEAILVNCSR  273 (342)
Q Consensus       258 ~l~~mk~gailIN~sR  273 (342)
                      .+   |+|+++||+|-
T Consensus       222 ~v---k~GavVIDVGi  234 (286)
T PRK14184        222 MV---KPGAVVVDVGI  234 (286)
T ss_pred             Hc---CCCCEEEEeee
Confidence            77   89999999984

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.43  E-value=0.00042  Score=62.24  Aligned_cols=94  Identities=20%  Similarity=0.286  Sum_probs=60.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc-ccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDi  239 (342)
                      -++.|+++.|||.|.+|..-++.| ..+|++|.++++...+....+.+        .+  .+.+. .... .+.+..+|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~--~i~~~~~~~~-~~dl~~~~l   72 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QG--GITWLARCFD-ADILEGAFL   72 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cC--CEEEEeCCCC-HHHhCCcEE
Confidence            368999999999999999999998 58999999999987654333211        11  11111 1112 345678999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      |+.+....+     +|.......+...++||+
T Consensus        73 Vi~at~d~~-----ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        73 VIAATDDEE-----LNRRVAHAARARGVPVNV   99 (205)
T ss_pred             EEECCCCHH-----HHHHHHHHHHHcCCEEEE
Confidence            888866432     334444444444566664

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.41  E-value=0.0019  Score=60.00  Aligned_cols=127  Identities=19%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             HHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH
Q 019328          180 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       180 vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~  258 (342)
                      +|+.|+ +++..+|++||+++.....+...         +   +......+ .+.++++|+|++|+|... +.. +-++.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g---~~~~~~~~-~~~~~~~DlvvlavP~~~-~~~-~l~~~   65 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALEL---------G---IIDEASTD-IEAVEDADLVVLAVPVSA-IED-VLEEI   65 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------T---SSSEEESH-HHHGGCCSEEEE-S-HHH-HHH-HHHHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------C---CeeeccCC-HhHhcCCCEEEEcCCHHH-HHH-HHHHh
Confidence            355552 24458999999998754332111         1   11122223 567899999999999332 333 33556


Q ss_pred             HccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe-ecCCCCCC-C---CCCccCCCceEEcCCCC
Q 019328          259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL-DVFEDEPY-M---KPGLSEMKNAIVVPHIA  322 (342)
Q Consensus       259 l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal-DV~~~EP~-~---~~~L~~~~nvi~TPHia  322 (342)
                      ...+++|+++++++.-.---.+++.+.+..+ ....+. =-|-+|-. +   ...|+.-.++++||+-.
T Consensus        66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            6679999999999876644444555555522 222221 12222211 1   23688888999999865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.40  E-value=0.0012  Score=62.75  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=66.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -+++||||.|..|+.-++.+..-++. +|.+|+|++.+. ++|.+.+..    .  .+.......+.++++.+||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~~~----~--~~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERFSK----E--FGVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHHHH----h--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            47899999999999999886544555 699999998653 334333221    1  112233357899999999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|.   +.-+|..+.+   |||+-++-++.
T Consensus       190 T~s---~~P~~~~~~l---~pg~hV~aiGs  213 (301)
T PRK06407        190 TNS---DTPIFNRKYL---GDEYHVNLAGS  213 (301)
T ss_pred             cCC---CCcEecHHHc---CCCceEEecCC
Confidence            873   4566766644   78877666653

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0019  Score=62.05  Aligned_cols=96  Identities=19%  Similarity=0.246  Sum_probs=69.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -+++||||.|..++.-++.+..-|+. +|.+|+|++... +++...    ++....  .......+.+++++.||+|+.+
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a~~----l~~~~~--~~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFAAR----LRKRGG--EAVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHHHH----HHhhcC--ccceeccCHHHHhhcCCEEEEe
Confidence            45899999999999999987656766 699999998753 222221    111111  1123457899999999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|.++   -++..+.+   |||+.+..+|-
T Consensus       203 T~s~~---Pil~~~~l---~~G~hI~aiGa  226 (330)
T COG2423         203 TPSTE---PVLKAEWL---KPGTHINAIGA  226 (330)
T ss_pred             cCCCC---CeecHhhc---CCCcEEEecCC
Confidence            88654   66766665   69999999984

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.39  E-value=0.0014  Score=61.33  Aligned_cols=111  Identities=21%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~  241 (342)
                      ..+++++|+|.|.+|+.++..| ...|.+|.+++|+..+. +++.+.+.    ..+     .....++++. +.++|+|+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~~----~~~-----~~~~~~~~~~~~~~~DivI  183 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERFQ----RYG-----EIQAFSMDELPLHRVDLII  183 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHHh----hcC-----ceEEechhhhcccCccEEE
Confidence            5678999999999999999998 46789999999986542 22222211    001     0111233332 35799999


Q ss_pred             EcCCCC--ccccc-ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          242 LHPVLD--KTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       242 l~lplt--~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      .++|..  ++... .+.   .+.++++.+++++.-.+. ++ .|.++.++.
T Consensus       184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~  229 (270)
T TIGR00507       184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL  229 (270)
T ss_pred             ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence            999974  22211 222   345789999999987664 34 455555544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.39  E-value=0.00066  Score=60.75  Aligned_cols=109  Identities=17%  Similarity=0.267  Sum_probs=70.2

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHH-H-Hhhhh--------hhhcc-CCCCCccc-
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F-VTAYG--------QFLKA-NGEQPVTW-  224 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~---~~~~~~~-~-~~~~~--------~~~~~-~~~~~~~~-  224 (342)
                      ..|..++|+|+|.|.+|..+|+.|+ ..|. ++..+|+.   .+..... + .+..+        ..+.. ........ 
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~   95 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAY   95 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence            4688999999999999999999985 6687 68899887   2110000 0 00000        00000 00000000 


Q ss_pred             ---cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          225 ---KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       225 ---~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                         ....+++++++.+|+|+-| ..+++++.++..+....++...++...
T Consensus        96 ~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~  144 (200)
T TIGR02354        96 DEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS  144 (200)
T ss_pred             eeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence               0123456788999999999 578899999999999999877666643

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.38  E-value=0.0012  Score=63.63  Aligned_cols=95  Identities=15%  Similarity=0.138  Sum_probs=63.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++++|||.|.+|+..+..++...+ -+|.+|+|+..+ .+.+.+.+..      ..+.......++++++++||+|+.
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~~~------~~g~~v~~~~d~~~al~~aDiVi~  203 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADLRA------ELGIPVTVARDVHEAVAGADIIVT  203 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHhh------ccCceEEEeCCHHHHHccCCEEEE
Confidence            35789999999999998887643355 479999998764 3333332210      011222235689999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      +.|..   .-++..+.   +++|+.+..+
T Consensus       204 aT~s~---~p~i~~~~---l~~g~~v~~v  226 (330)
T PRK08291        204 TTPSE---EPILKAEW---LHPGLHVTAM  226 (330)
T ss_pred             eeCCC---CcEecHHH---cCCCceEEee
Confidence            98853   35565544   4677766654

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.38  E-value=0.00084  Score=64.05  Aligned_cols=112  Identities=20%  Similarity=0.220  Sum_probs=71.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|+|+|.|.-|.++|+.|+ .-|.+|..|.|+++...+-...............+.......+++++++.||+|++.+|
T Consensus         2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            58999999999999999985 56688888888765321110000000000111222233346789999999999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHH
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~  280 (342)
                      . ...+..+ ++.-..+++++.+|+++-|=-.+.-
T Consensus        81 s-~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~  113 (329)
T COG0240          81 S-QALREVL-RQLKPLLLKDAIIVSATKGLEPETG  113 (329)
T ss_pred             h-HHHHHHH-HHHhhhccCCCeEEEEeccccCCCc
Confidence            2 3333332 2222456899999999987655443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.37  E-value=0.0011  Score=63.61  Aligned_cols=93  Identities=18%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .|++|+|+|+|.+|....+. ++++|++|+++|++.++.....  +.+..      .-........++.+-+.+|+++.+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~a~--~lGAd------~~i~~~~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLELAK--KLGAD------HVINSSDSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHHHH--HhCCc------EEEEcCCchhhHHhHhhCcEEEEC
Confidence            48999999999999999998 5899999999999987643221  11100      000000011233333347888888


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEec
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      +| .. |-    ...++.+|++..++-+
T Consensus       237 v~-~~-~~----~~~l~~l~~~G~~v~v  258 (339)
T COG1064         237 VG-PA-TL----EPSLKALRRGGTLVLV  258 (339)
T ss_pred             CC-hh-hH----HHHHHHHhcCCEEEEE
Confidence            77 33 22    3466667777666544

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.36  E-value=0.00049  Score=61.71  Aligned_cols=77  Identities=16%  Similarity=0.232  Sum_probs=51.5

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      -++.|+++.|||.|.+|...++.| ...|++|.+++|...+......+.        +  ...+....-.++.+..+|+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~--------~--~i~~~~~~~~~~~l~~adlV   74 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEE--------G--KIRWKQKEFEPSDIVDAFLV   74 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhC--------C--CEEEEecCCChhhcCCceEE
Confidence            479999999999999999999987 578999999998764433322110        1  01111111113456789998


Q ss_pred             EEcCCCCc
Q 019328          241 SLHPVLDK  248 (342)
Q Consensus       241 ~l~lplt~  248 (342)
                      +.+....+
T Consensus        75 iaaT~d~e   82 (202)
T PRK06718         75 IAATNDPR   82 (202)
T ss_pred             EEcCCCHH
Confidence            88877444

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.34  E-value=0.0024  Score=67.99  Aligned_cols=153  Identities=18%  Similarity=0.158  Sum_probs=96.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~  235 (342)
                      ++|||||.|.||..+|..++ ..|++|..||++++.....  .. ..+....+......       .......+++ .++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  413 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFK  413 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence            68999999999999999975 5699999999987642111  00 01111111110000       0111234565 568


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv  315 (342)
                      +||+|+=++|-+.+.+.-+-++.=+.++|+++|...  -+-++-..|.+++.. .-.-.++.-|.+  ...-||.+   |
T Consensus       414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~ig~Hff~P--~~~m~LvE---v  485 (737)
T TIGR02441       414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSR-PEKVIGMHYFSP--VDKMQLLE---I  485 (737)
T ss_pred             cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-ccceEEEeccCC--cccCceEE---E
Confidence            999999999999998888888888889999988632  233556777777754 344566666643  21223443   6


Q ss_pred             EEcCCCCCCcHHH
Q 019328          316 IVVPHIASASKWT  328 (342)
Q Consensus       316 i~TPHia~~t~~~  328 (342)
                      +-+|+.+-.|.+.
T Consensus       486 v~g~~Ts~~~~~~  498 (737)
T TIGR02441       486 ITHDGTSKDTLAS  498 (737)
T ss_pred             eCCCCCCHHHHHH
Confidence            6677665444444

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.34  E-value=0.0011  Score=65.75  Aligned_cols=95  Identities=16%  Similarity=0.275  Sum_probs=63.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|+++.|||.|.||+.+++.| ...|. ++++++|+..+ ...+...++.         .......++.+++.++|+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~~~---------~~~~~~~~l~~~l~~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAFRN---------ASAHYLSELPQLIKKADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHhcC---------CeEecHHHHHHHhccCCEE
Confidence            58899999999999999999998 56775 79999998754 2333332210         0112234667889999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +.|.+.   ...+|..+...  .+.-++|+.+
T Consensus       247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLa  273 (414)
T PRK13940        247 IAAVNV---LEYIVTCKYVG--DKPRVFIDIS  273 (414)
T ss_pred             EECcCC---CCeeECHHHhC--CCCeEEEEeC
Confidence            999873   23445554432  1234566654

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.34  E-value=0.0012  Score=64.03  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=66.0

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -++++|||.|..++.-++.+..-+.. +|.+|+|++... +++.+.+.    .   .+.......++++++++||+|+.+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~~~----~---~~~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARNLA----G---PGLRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHHHH----h---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            46899999999999998876545555 699999997643 33333221    1   122233457899999999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .|.+ +..-+|..+.   +|||+.++-+|
T Consensus       201 T~S~-~~~Pvl~~~~---lkpG~hV~aIG  225 (346)
T PRK07589        201 TADK-TNATILTDDM---VEPGMHINAVG  225 (346)
T ss_pred             cCCC-CCCceecHHH---cCCCcEEEecC
Confidence            8732 2224455544   58999877765

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.32  E-value=0.0022  Score=68.02  Aligned_cols=153  Identities=18%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--H-hhhhhhhccCCCCC-------ccccccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--V-TAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~  235 (342)
                      ++|+|||.|.||..+|..++ ..|++|+.||++.+......  . ..+....+......       .......+++ .++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  391 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD  391 (714)
T ss_pred             ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence            57999999999999999975 56999999999876422110  0 01111111111000       0111234554 469


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv  315 (342)
                      .||+|+=++|-+.+.+.-+-++.=+.++|+++|-..+.+  ++-..|..+++. +=.-.++=-|.+  ...-||.+   |
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~P--~~~~~lvE---v  463 (714)
T TIGR02437       392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFNP--VHRMPLVE---V  463 (714)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCCC--cccCceEe---e
Confidence            999999999998888888888888889999998654333  455667777653 233444444432  21123433   6


Q ss_pred             EEcCCCCCCcHHH
Q 019328          316 IVVPHIASASKWT  328 (342)
Q Consensus       316 i~TPHia~~t~~~  328 (342)
                      +-+++.+-.|.+.
T Consensus       464 v~g~~Ts~~~~~~  476 (714)
T TIGR02437       464 IRGEKSSDETIAT  476 (714)
T ss_pred             cCCCCCCHHHHHH
Confidence            6666665444443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.32  E-value=0.0011  Score=63.62  Aligned_cols=105  Identities=23%  Similarity=0.290  Sum_probs=62.4

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hhhhhccCCCCCccccccCCHHHHh-hcCCEEEEcC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~l~l  244 (342)
                      +|+|||.|.||..+|..| ...|.+|..|+|+.... +..... .+.........+.......++++.+ ..+|+|++++
T Consensus         2 kI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~~-~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav   79 (326)
T PRK14620          2 KISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTTF-ESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV   79 (326)
T ss_pred             EEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHHH-HHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence            699999999999999998 46789999999976421 111110 0000000000011111235677766 5899999999


Q ss_pred             CCCcccccccCHhHHc-cCCCCcEEEecCCCc
Q 019328          245 VLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (342)
Q Consensus       245 plt~~t~~li~~~~l~-~mk~gailIN~sRG~  275 (342)
                      |. .++...+ ++... .+++++.+|...-|-
T Consensus        80 ks-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         80 PT-QQLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             CH-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            93 3344433 22333 567777777776664

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.24  E-value=0.00032  Score=55.86  Aligned_cols=89  Identities=22%  Similarity=0.197  Sum_probs=58.5

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      +++|+++.|||.|.+|..-++.| ...|++|.++++... ..+.             ...  +. ...+++.+..+|+|+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~~-~~~~-------------~i~--~~-~~~~~~~l~~~~lV~   65 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEIE-FSEG-------------LIQ--LI-RREFEEDLDGADLVF   65 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSEH-HHHT-------------SCE--EE-ESS-GGGCTTESEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchh-hhhh-------------HHH--HH-hhhHHHHHhhheEEE
Confidence            68999999999999999999997 689999999999851 1110             011  11 123456688899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .+.+...     +++...+..+.-.+++|++-
T Consensus        66 ~at~d~~-----~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   66 AATDDPE-----LNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             E-SS-HH-----HHHHHHHHHHHTTSEEEETT
T ss_pred             ecCCCHH-----HHHHHHHHHhhCCEEEEECC
Confidence            8877332     44555555665668888753

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.22  E-value=0.00087  Score=60.34  Aligned_cols=98  Identities=21%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             EEEEEccChHHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          167 TVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a-~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +|||||+|.||+.+.+.+..+ .+.+ +.+||++.++.... .            .........+++|++++.|+++=|.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~-~------------~~~~~~~~s~ide~~~~~DlvVEaA   68 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL-E------------ASVGRRCVSDIDELIAEVDLVVEAA   68 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH-H------------hhcCCCccccHHHHhhccceeeeeC
Confidence            799999999999999987423 3344 77899987653211 0            0111222378999999999999886


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHH
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL  282 (342)
                      .  ++.-.   +-..+.+|.|--+|=+|-|.+.|+.-+
T Consensus        69 S--~~Av~---e~~~~~L~~g~d~iV~SVGALad~~l~  101 (255)
T COG1712          69 S--PEAVR---EYVPKILKAGIDVIVMSVGALADEGLR  101 (255)
T ss_pred             C--HHHHH---HHhHHHHhcCCCEEEEechhccChHHH
Confidence            5  32222   224445667777777888888876543

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.22  E-value=0.0024  Score=62.71  Aligned_cols=102  Identities=19%  Similarity=0.280  Sum_probs=69.4

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~sDiV~  241 (342)
                      -+++||+|.|..++.-++.++.-+.  -+|.+|+|++.+. ++|.+.+..    . .... ......+.++++++||+|+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~~~----~-~~~~~~v~~~~s~~eav~~ADIVv  228 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWVAE----T-YPQITNVEVVDSIEEVVRGSDIVT  228 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHHHH----h-cCCCceEEEeCCHHHHHcCCCEEE
Confidence            4689999999999999998744353  3899999998643 334333221    1 0011 1233578999999999999


Q ss_pred             EcCCCCc---ccccccCHhHHccCCCCcEEEecCCCc
Q 019328          242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       242 l~lplt~---~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      .|.+.+.   ++.-+|..+.   +|||+.++.++.-+
T Consensus       229 taT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e  262 (379)
T PRK06199        229 YCNSGETGDPSTYPYVKREW---VKPGAFLLMPAACR  262 (379)
T ss_pred             EccCCCCCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence            9987543   3446676654   47999887776533

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.20  E-value=0.0029  Score=61.54  Aligned_cols=155  Identities=19%  Similarity=0.226  Sum_probs=94.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-------CCCccc-cccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-------EQPVTW-KRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~l~ell~~s  237 (342)
                      .++||+|+|-||.++|-..+ .-|.+|+++|-+...- +..-.+-. ...+..       ....+. ....++++ ++.|
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~V-d~ln~G~~-~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~   85 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKV-DKLNRGES-YIEEPDLDEVVKEAVESGKLRATTDPEE-LKEC   85 (436)
T ss_pred             eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHH-HHHhCCcc-eeecCcHHHHHHHHHhcCCceEecChhh-cccC
Confidence            78999999999999999875 6799999999886531 11100000 000000       000111 11234444 4589


Q ss_pred             CEEEEcCCCCccccc-ccC--------HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC-CccEEEeecC---CCCCC
Q 019328          238 DVISLHPVLDKTTYH-LIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVF---EDEPY  304 (342)
Q Consensus       238 DiV~l~lplt~~t~~-li~--------~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g-~i~gaalDV~---~~EP~  304 (342)
                      |++++|+| ||-+.+ --+        +..-..||+|..+|==|+-.+=-++.++.-|.+. .=-..+-|.|   .+|=.
T Consensus        86 dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv  164 (436)
T COG0677          86 DVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERV  164 (436)
T ss_pred             CEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCcccc
Confidence            99999998 554442 111        2345669999999999998888888888887764 1112224544   44432


Q ss_pred             -CCC---CccCCCceEEcCCCCCCcHHHHH
Q 019328          305 -MKP---GLSEMKNAIVVPHIASASKWTRE  330 (342)
Q Consensus       305 -~~~---~L~~~~nvi~TPHia~~t~~~~~  330 (342)
                       |.+   .+.+.|+||     ||.|..+.+
T Consensus       165 ~PG~~~~el~~~~kVI-----gG~tp~~~e  189 (436)
T COG0677         165 LPGNVLKELVNNPKVI-----GGVTPKCAE  189 (436)
T ss_pred             CCCchhhhhhcCCcee-----ecCCHHHHH
Confidence             333   455667764     677766653

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.20  E-value=0.0054  Score=57.87  Aligned_cols=117  Identities=14%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.++++.|+|.|..|++++..| ...|+ +|..+||+..+. +.+.+.+..    .. .........++.+.++++|+|
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~l~~----~~-~~~~~~~~~~~~~~~~~aDiV  196 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADELNA----RF-PAARATAGSDLAAALAAADGL  196 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHHHh----hC-CCeEEEeccchHhhhCCCCEE
Confidence            46679999999999999999997 57887 799999987542 232222210    00 001111224556677899999


Q ss_pred             EEcCCCCccc--ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTT--YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t--~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.+.|..-..  ...++.   +.++++.+++++.=.+ .++.-|.+|-+.|
T Consensus       197 InaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P-~~T~ll~~A~~~G  243 (284)
T PRK12549        197 VHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFP-LETELLRAARALG  243 (284)
T ss_pred             EECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCC-CCCHHHHHHHHCC
Confidence            9998864211  112232   3356677777765444 3344444444444

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.18  E-value=0.0046  Score=56.05  Aligned_cols=115  Identities=19%  Similarity=0.280  Sum_probs=69.6

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCCh---------hhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .++.|+++.|.|||++|+.+|+.| ...|++|++ .|.+.         ....+. ....+      ...........+-
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~-~~~~~------~~~~~~~~~~~~~   90 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINY-AVALG------GSARVKVQDYFPG   90 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHH-HHhhC------CccccCcccccCc
Confidence            478999999999999999999998 688887665 55543         011111 11111      0000000001122


Q ss_pred             HHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       231 ~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      ++++ ..||+++-|.+     .+.|+.+....++ =.+++--+.+++-+  .-.+.|++..+
T Consensus        91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi  144 (217)
T cd05211          91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGI  144 (217)
T ss_pred             ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCc
Confidence            2322 47999998877     3468888888887 44666677777655  34566666544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.17  E-value=0.00081  Score=55.06  Aligned_cols=97  Identities=14%  Similarity=0.270  Sum_probs=53.4

Q ss_pred             EEEEEc-cChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvGIiG-~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +||||| .|.+|+.+.++|++...+++.. ++++.... ..+...+.   ...+........ .+.+ .+.++|+|++|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~~-~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADPE-ELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSGH-HHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cchh-HhhcCCEEEecC
Confidence            699999 9999999999987777777554 44443110 00001010   000011111111 2333 449999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |... ++. +....   .++|..+|+.|.-
T Consensus        75 ~~~~-~~~-~~~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   75 PHGA-SKE-LAPKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             CHHH-HHH-HHHHH---HHTTSEEEESSST
T ss_pred             chhH-HHH-HHHHH---hhCCcEEEeCCHH
Confidence            9332 121 22222   4789999998743

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.16  E-value=0.0055  Score=58.25  Aligned_cols=154  Identities=21%  Similarity=0.249  Sum_probs=95.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH---HhhhhhhhccCCCCC------cc-ccccCCHHHHh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP------VT-WKRASSMDEVL  234 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~------~~-~~~~~~l~ell  234 (342)
                      -+++||||.|.||+.+|..++. -|.+|..+|++........   ...+...........      .. .....++. .+
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l   80 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL   80 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence            4799999999999999999753 5699999999954311110   000110011100000      00 01122333 67


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~  313 (342)
                      +.||+|+=++|-+-+.++-+-++.=+..||+++|= |||+   +.-.++.++++ .+=...++=.|.+-|     +..+=
T Consensus        81 ~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~~-----~m~LV  151 (307)
T COG1250          81 KDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPVP-----LMPLV  151 (307)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCCC-----cceeE
Confidence            99999999999998888888888888889999984 5544   34567788874 444556655554433     44444


Q ss_pred             ceEEcCCCCCCcHHHH
Q 019328          314 NAIVVPHIASASKWTR  329 (342)
Q Consensus       314 nvi~TPHia~~t~~~~  329 (342)
                      -||-+.+++-.|.+..
T Consensus       152 EvI~g~~T~~e~~~~~  167 (307)
T COG1250         152 EVIRGEKTSDETVERV  167 (307)
T ss_pred             EEecCCCCCHHHHHHH
Confidence            4677777654444433

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.15  E-value=0.0023  Score=59.40  Aligned_cols=103  Identities=13%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhc--CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a--~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~  241 (342)
                      .+|||||+|.||+.+++.+.+.  .++++. +|++.+.. .+.+..         .     .....+++++ ..+.|+|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~~---------~-----~~~~~~l~~ll~~~~DlVV   67 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALAG---------R-----VALLDGLPGLLAWRPDLVV   67 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhhc---------c-----CcccCCHHHHhhcCCCEEE
Confidence            5899999999999999987432  235544 46665432 121110         0     2235689997 58899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC---HHHHHHHHHc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd---~~aL~~aL~~  288 (342)
                      =|..  ++.-.-.   -.+.++.|.-++=.|-|.+.|   ++.|.++.++
T Consensus        68 E~A~--~~av~e~---~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         68 EAAG--QQAIAEH---AEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             ECCC--HHHHHHH---HHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            8877  3222222   233356787888888899888   3455555544

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.14  E-value=0.0018  Score=62.36  Aligned_cols=93  Identities=16%  Similarity=0.113  Sum_probs=59.9

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.|+++.|||.|.||+.+|+.| ...|. +|++.+|+....  .    |+.             .....-+...++|+|
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~--~----~~~-------------~~~~~~~~~~~~DvV  230 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL--P----YRT-------------VVREELSFQDPYDVI  230 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc--c----hhh-------------hhhhhhhcccCCCEE
Confidence            58899999999999999999998 57774 699999986421  0    100             000111345789999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +.|..-|....-.+..+.++..++ -+||+.+=-.
T Consensus       231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR  264 (338)
T PRK00676        231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR  264 (338)
T ss_pred             EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence            987433344444556665554332 3777765433

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.13  E-value=0.0017  Score=62.09  Aligned_cols=87  Identities=16%  Similarity=0.173  Sum_probs=57.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|||+|+|+||+.+++.+.+.-++++.+ +|+++......               ..+.....+.++++.+.|+|++|.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~---------------~~~v~~~~d~~e~l~~iDVViIct   68 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT---------------ETPVYAVADDEKHLDDVDVLILCM   68 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh---------------cCCccccCCHHHhccCCCEEEEcC
Confidence            58999999999999999874344788775 68875221110               011122346777888999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      |...  .   -+.....++.|.=+|+..
T Consensus        69 Ps~t--h---~~~~~~~L~aG~NVV~s~   91 (324)
T TIGR01921        69 GSAT--D---IPEQAPYFAQFANTVDSF   91 (324)
T ss_pred             CCcc--C---HHHHHHHHHcCCCEEECC
Confidence            8432  2   244455567776777764

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.11  E-value=0.002  Score=61.56  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=73.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc-CCCCCcc-ccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVT-WKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||.|.||..+|.+| ...|.+|..+.|.....   .. ..+..+.. .+..... .....+.+ .+..+|+|+++
T Consensus         6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~---~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila   79 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEA---VR-ENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG   79 (313)
T ss_pred             cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHH---HH-hCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence            5899999999999999998 56789999998875321   11 11111110 0100000 01112333 45789999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal  296 (342)
                      +|.. ++...+ +.....+++++.++...-| +-.++.|.+.+...++.++..
T Consensus        80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~  129 (313)
T PRK06249         80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC  129 (313)
T ss_pred             ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence            9944 333322 2333446788888887666 446677777887767666543

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.11  E-value=0.0026  Score=61.04  Aligned_cols=131  Identities=18%  Similarity=0.279  Sum_probs=74.2

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      +..++|+|||.|.+|..+|..++ ..| .++..||.+.......-.+... .....+ .........+.+ .++.||+|+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~-~~~~~~-~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKH-FSTLVG-SNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhh-hccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence            45679999999999999999864 445 6899999876432111111100 000000 011112235666 679999999


Q ss_pred             EcC--CCCc-cccc--------ccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHH--cCCccEEE--ee
Q 019328          242 LHP--VLDK-TTYH--------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD  297 (342)
Q Consensus       242 l~l--plt~-~t~~--------li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~--~g~i~gaa--lD  297 (342)
                      ++.  |..+ .++.        ++-  .+.+....|.+++||++--.-+-...+.+.-.  ..++.|.+  ||
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            998  5433 1111        110  12344456889999986544333444444432  45677666  55

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.10  E-value=0.0019  Score=61.57  Aligned_cols=127  Identities=17%  Similarity=0.225  Sum_probs=74.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+|||.|.+|..+|..++ ..|. +|..+|...........+.+.....  ...........++++ +++||+|+++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~--~~~~~~i~~t~d~~~-~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPV--GGFDTKVTGTNNYAD-TANSDIVVITA   77 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhc--cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence            47999999999999999874 4443 8999998654322111111110000  000111122357777 78999999998


Q ss_pred             CCCcccccc-------cCH-------hHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEE--ee
Q 019328          245 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD  297 (342)
Q Consensus       245 plt~~t~~l-------i~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaa--lD  297 (342)
                      +. |...+.       .|.       +.+....|++++|+++---=+-...+.+.  +...++.|.+  ||
T Consensus        78 g~-p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        78 GL-PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            73 222221       111       23344457899999987554445555555  5556677776  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.09  E-value=0.0027  Score=60.04  Aligned_cols=85  Identities=14%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChh--hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      ++.||++.|+|.|.+|++++..| ...|++ |..++|+..  .+.++..+.+..................++++.++.+|
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence            46789999999999999999997 478986 999999852  22222222111000000000000111123455667889


Q ss_pred             EEEEcCCCC
Q 019328          239 VISLHPVLD  247 (342)
Q Consensus       239 iV~l~lplt  247 (342)
                      +|+.+.|..
T Consensus       202 ilINaTp~G  210 (289)
T PRK12548        202 ILVNATLVG  210 (289)
T ss_pred             EEEEeCCCC
Confidence            999999854

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.08  E-value=0.0027  Score=62.62  Aligned_cols=97  Identities=24%  Similarity=0.282  Sum_probs=65.1

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      +|+++++.|||.|.||.-+|+.| ...| .+|++.+|+..+. ......++          ..+....++.+.+.++|+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA-~~La~~~~----------~~~~~l~el~~~l~~~DvV  242 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERA-EELAKKLG----------AEAVALEELLEALAEADVV  242 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHH-HHHHHHhC----------CeeecHHHHHHhhhhCCEE
Confidence            49999999999999999999998 4677 5788999997653 22222222          1223346777889999999


Q ss_pred             EEcCCCCcccccccCHhHHccC-C--CCcEEEecCC
Q 019328          241 SLHPVLDKTTYHLINKERLATM-K--KEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~m-k--~gailIN~sR  273 (342)
                      +.+..   +...++..+.+... +  ++-++|+.+=
T Consensus       243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiav  275 (414)
T COG0373         243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAV  275 (414)
T ss_pred             EEecC---CCccccCHHHHHHHHhcccCeEEEEecC
Confidence            99954   44555555444332 1  1135666553

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.05  E-value=0.0034  Score=50.64  Aligned_cols=67  Identities=25%  Similarity=0.449  Sum_probs=48.2

Q ss_pred             EEEEEccChHHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      ++||||+|.+|+...+.+.+. -+.++. ++|+++... +.+...++            ...+.+++++++  ..|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~~~------------~~~~~~~~~ll~~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEKYG------------IPVYTDLEELLADEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHTT------------SEEESSHHHHHHHTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHHhc------------ccchhHHHHHHHhhcCCEEEE
Confidence            799999999999998776433 466765 688887542 22222221            224679999998  7899999


Q ss_pred             cCCC
Q 019328          243 HPVL  246 (342)
Q Consensus       243 ~lpl  246 (342)
                      +.|.
T Consensus        69 ~tp~   72 (120)
T PF01408_consen   69 ATPP   72 (120)
T ss_dssp             ESSG
T ss_pred             ecCC
Confidence            9993

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.02  E-value=0.0014  Score=62.05  Aligned_cols=40  Identities=20%  Similarity=0.384  Sum_probs=35.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~  204 (342)
                      .|+.+||+|+|.+|..-.+. ++|||++|+++|+..+++.+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kkee  220 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKKEE  220 (360)
T ss_pred             CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhHHH
Confidence            79999999999999988887 69999999999998755433

>PLN02477 glutamate dehydrogenase

Probab=97.01  E-value=0.0052  Score=60.80  Aligned_cols=118  Identities=26%  Similarity=0.325  Sum_probs=73.5

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCC----------hhhHHHHHHhhhhhhhccCCCCCccccccC
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      |.++.|+||.|.|+|++|+.+|+.| ...|++|++ .|.+          ... ..++....+. +.  ...  +... .
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~-L~~~k~~~g~-l~--~~~--~a~~-i  272 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPA-LRKHVAEGGG-LK--GFP--GGDP-I  272 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHH-HHHHHHhcCc-hh--ccc--cceE-e
Confidence            3479999999999999999999997 689999994 4544          111 1111111110 00  000  0111 1


Q ss_pred             CHHH-HhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          229 SMDE-VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       229 ~l~e-ll~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      +.++ +...||+++-|-     ..+.|+++...+++ =.+++--+-+++ .. .-.+.|++..|.-
T Consensus       273 ~~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~~  330 (410)
T PLN02477        273 DPDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVVV  330 (410)
T ss_pred             cCccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcEE
Confidence            2233 235789988763     46679998888886 447788888887 33 3447777776543

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.99  E-value=0.0047  Score=61.68  Aligned_cols=120  Identities=11%  Similarity=0.086  Sum_probs=72.4

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE-cC----------ChhhHHHHHHhhhhhhhcc-CCCCCccccccC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL----------YQATRLEKFVTAYGQFLKA-NGEQPVTWKRAS  228 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  228 (342)
                      .++.|+||.|.|+|++|+.+|+.| ..+|++|++. |.          ... ...++.+.....+.. ....  +. ...
T Consensus       228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~-~L~~~k~~~~~~l~~~~~~~--~~-~~i  302 (445)
T PRK09414        228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLE-KLKEIKEVRRGRISEYAEEF--GA-EYL  302 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHH-HHHHHHHhcCCchhhhhhhc--CC-eec
Confidence            479999999999999999999998 6899999987 52          221 111111110000000 0000  00 112


Q ss_pred             CHHHHhh-cCCEEEEcCCCCcccccccCHhHHccCC--CCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          229 SMDEVLR-EADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       229 ~l~ell~-~sDiV~l~lplt~~t~~li~~~~l~~mk--~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +.++++. .||+++-|..     .+.|+.+....++  +=.+++-.+-|++ . .+-.+.|.++.|.
T Consensus       303 ~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t-~~A~~~L~~rGI~  362 (445)
T PRK09414        303 EGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-T-PEAIEVFLEAGVL  362 (445)
T ss_pred             CCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-C-HHHHHHHHHCCcE
Confidence            3444443 6999988865     5668887777763  2347777788887 3 3345667766553

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.001  Score=64.10  Aligned_cols=68  Identities=19%  Similarity=0.331  Sum_probs=47.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ++||||||-|..|+.++.. ++.+|.++++.||.++.......+        ... ...+.....+.++.+.||+|+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~--------~~i-~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVAD--------RVI-VAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhccc--------cee-ecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999998 589999999999987642211100        000 0001112357889999999975

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.99  E-value=0.0013  Score=61.19  Aligned_cols=129  Identities=17%  Similarity=0.241  Sum_probs=74.8

Q ss_pred             EEEEcc-ChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       168 vGIiG~-G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      |+|||. |.+|..+|..++ ..|    -++..||.+.+.. ............. . .........++.+.+++||+|++
T Consensus         1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l-~~~~~dl~~~~~~-~-~~~~i~~~~d~~~~~~~aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKL-KGVAMDLQDAVEP-L-ADIKVSITDDPYEAFKDADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccc-hHHHHHHHHhhhh-c-cCcEEEECCchHHHhCCCCEEEE
Confidence            589999 999999999874 445    6899999876432 1111111111111 1 11222334567889999999999


Q ss_pred             cCC--CCc-cccc--------ccC--HhHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEE-eecCC
Q 019328          243 HPV--LDK-TTYH--------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDVFE  300 (342)
Q Consensus       243 ~lp--lt~-~t~~--------li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaa-lDV~~  300 (342)
                      +.-  ..+ .++.        ++.  .+.+++..|.+++||++---=+-...+.+.  +...++.|.+ +|...
T Consensus        77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r  150 (263)
T cd00650          77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIR  150 (263)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence            642  111 1111        110  123444568999999963222333344444  4567899998 87643

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.94  E-value=0.0022  Score=64.91  Aligned_cols=76  Identities=21%  Similarity=0.208  Sum_probs=51.8

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +.++.|++++|+|.|.+|+.++..+ ...|++|.+++|+..+. +.....++       .   ......++.+ +..+|+
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~~-------~---~~~~~~~~~~-l~~~Di  393 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRCQ-------G---KAFPLESLPE-LHRIDI  393 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHhc-------c---ceechhHhcc-cCCCCE
Confidence            3467899999999999999999998 58899999999986542 22211110       0   0011122222 468999


Q ss_pred             EEEcCCCCc
Q 019328          240 ISLHPVLDK  248 (342)
Q Consensus       240 V~l~lplt~  248 (342)
                      |++|+|...
T Consensus       394 VInatP~g~  402 (477)
T PRK09310        394 IINCLPPSV  402 (477)
T ss_pred             EEEcCCCCC
Confidence            999999654

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.85  E-value=0.0061  Score=56.49  Aligned_cols=122  Identities=14%  Similarity=0.131  Sum_probs=72.6

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCCh-----h----hHHH---HHHhhhhhhhccCCCCCc-cccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ-----A----TRLE---KFVTAYGQFLKANGEQPV-TWKR  226 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~-----~----~~~~---~~~~~~~~~~~~~~~~~~-~~~~  226 (342)
                      .++.|+||.|-|||++|+.+|+.| ..+|++|++. |.+-     +    +...   +..+..+..+..- .... +...
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~-~~~~~~a~~  111 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEY-AKKYGTAKY  111 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHH-hhcCCCCEE
Confidence            479999999999999999999998 6899999944 3110     0    0010   0000000000000 0000 0111


Q ss_pred             cCCHHHH-hhcCCEEEEcCCCCcccccccCHhHHccCC--CCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          227 ASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       227 ~~~l~el-l~~sDiV~l~lplt~~t~~li~~~~l~~mk--~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                       .+.+++ -..||+++-|     .+.+.|+++...+++  +=.+++-.+-|++-+  +-.+.|.++.|.
T Consensus       112 -~~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         112 -FEGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             -eCCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence             233333 3579999877     467889999888884  345777777888754  344667766553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.79  E-value=0.0081  Score=55.46  Aligned_cols=124  Identities=21%  Similarity=0.283  Sum_probs=72.9

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE--------cCChhh--HHHHHHhhhhh-hhccCCCCCccccccCCH
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQ-FLKANGEQPVTWKRASSM  230 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~--------d~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l  230 (342)
                      ++.|+++.|-|+|++|+.+|+.| ...|++|++.        |+..-.  ......+..+. ........+-... ..+-
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~  106 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAE-YIPN  106 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSE-EECH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCccccccccccccee-Eecc
Confidence            69999999999999999999998 6889998876        554321  11111112111 0000000000001 1123


Q ss_pred             H-HHh-hcCCEEEEcCCCCcccccccCHhHHc-cCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEE
Q 019328          231 D-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       231 ~-ell-~~sDiV~l~lplt~~t~~li~~~~l~-~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      + +++ ..||+++.|-     ..+.|+++... .+++|+-+| --+.+.+- .++.. .|++..|.-+
T Consensus       107 ~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~vi  167 (244)
T PF00208_consen  107 DDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGILVI  167 (244)
T ss_dssp             HCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-EEE
T ss_pred             ccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCEEE
Confidence            2 455 6899999883     45678888888 787665554 55566654 55554 7777765433

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.77  E-value=0.0039  Score=61.12  Aligned_cols=101  Identities=17%  Similarity=0.088  Sum_probs=66.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +++-|||.|.||+.+|+.|+ .-| .+|+..||+..+.... .+..+.-+   ....+.......+.+++++.|+|+.++
T Consensus         2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i-~~~~~~~v---~~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARI-AELIGGKV---EALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHH-Hhhccccc---eeEEecccChHHHHHHHhcCCEEEEeC
Confidence            68999999999999999985 455 8999999997653221 11100000   001111222346889999999999999


Q ss_pred             CCCcccccccCHhHH-ccCCCCcEEEecCCCccC
Q 019328          245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       245 plt~~t~~li~~~~l-~~mk~gailIN~sRG~~v  277 (342)
                      |..-      +...+ +.++-|.-.+++|-.+..
T Consensus        77 p~~~------~~~i~ka~i~~gv~yvDts~~~~~  104 (389)
T COG1748          77 PPFV------DLTILKACIKTGVDYVDTSYYEEP  104 (389)
T ss_pred             Cchh------hHHHHHHHHHhCCCEEEcccCCch
Confidence            9432      22333 456778888888766544

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.75  E-value=0.0015  Score=58.90  Aligned_cols=157  Identities=19%  Similarity=0.243  Sum_probs=96.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc-----CCCCCcc-----------cc
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-----NGEQPVT-----------WK  225 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----------~~  225 (342)
                      ...-+.|+|||.|.||..+|+.. ...|..|+.+|++.+....+. +.....++.     ....+..           ..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A~-~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~   85 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRAT-KAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK   85 (298)
T ss_pred             cccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHHH-HHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence            44557899999999999999986 588999999999876432221 111111110     0111110           01


Q ss_pred             ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC
Q 019328          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (342)
Q Consensus       226 ~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~  304 (342)
                      ...++.++++.+|+|+=++--+-+.+.-+-++.=...|+.++|+ |+|.   +....+..+++.. -..+||-.|.+-| 
T Consensus        86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvP-  160 (298)
T KOG2304|consen   86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVP-  160 (298)
T ss_pred             HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCch-
Confidence            23466777788888876665555444444444445568887775 4443   4456777887754 5677888887655 


Q ss_pred             CCCCccCCCceEEcCCCCCCcHHHH
Q 019328          305 MKPGLSEMKNAIVVPHIASASKWTR  329 (342)
Q Consensus       305 ~~~~L~~~~nvi~TPHia~~t~~~~  329 (342)
                          ...+=.||=|+..+-.|..+.
T Consensus       161 ----vMKLvEVir~~~TS~eTf~~l  181 (298)
T KOG2304|consen  161 ----VMKLVEVIRTDDTSDETFNAL  181 (298)
T ss_pred             ----hHHHhhhhcCCCCCHHHHHHH
Confidence                344445777777654444443

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.73  E-value=0.0062  Score=56.88  Aligned_cols=108  Identities=17%  Similarity=0.144  Sum_probs=59.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|||||+|.||+.+++.+.+.-++++. ++++........  ..+          ..+.....+++++-...|+|+.|.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~--~~~----------~~~~~~~~d~~~l~~~~DvVve~t   69 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR--RAL----------GEAVRVVSSVDALPQRPDLVVECA   69 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh--hhh----------ccCCeeeCCHHHhccCCCEEEECC
Confidence            4899999999999999987432245543 333332211000  000          001223467888755689999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCH---HHHHHHHHcCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~---~aL~~aL~~g~  290 (342)
                      |...  ..   +-....++.|.-++-.+-|.+.|.   +.|.++.+++.
T Consensus        70 ~~~~--~~---e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g  113 (265)
T PRK13303         70 GHAA--LK---EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG  113 (265)
T ss_pred             CHHH--HH---HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence            8332  21   223333445555555555555543   34555555543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.72  E-value=0.0041  Score=53.47  Aligned_cols=41  Identities=17%  Similarity=0.078  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .-+|.|++|.|||-|.+|...++.| ...|++|.++++...+
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~   48 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICK   48 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCH
Confidence            3589999999999999999999997 5899999999876543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.72  E-value=0.0062  Score=50.13  Aligned_cols=111  Identities=25%  Similarity=0.355  Sum_probs=60.4

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +|+|+|+ |+||+.+++.+...-++++. ++++..++....   ..+..   .+....+.....++++++..+|+++-..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g~~---~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVGEL---AGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCHHH---CTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhhhh---hCcCCcccccchhHHHhcccCCEEEEcC
Confidence            7999999 99999999997545788855 667765221000   01100   1112334445689999999999988775


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                        +|+.-.-.-+..   ++.|.-+|--..|---++.+.++.+.+
T Consensus        76 --~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   76 --NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             ---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             --ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence              343222111222   234666666556664344344444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=96.69  E-value=0.015  Score=56.62  Aligned_cols=127  Identities=18%  Similarity=0.267  Sum_probs=93.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDiV~l  242 (342)
                      ..+|+||+|.||+.+|..+ ..-|.+|.+|+|+..+. ++|..+       .... .......+++|++   +.=--|.+
T Consensus         4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~kt-d~f~~~-------~~~~-k~i~~~~sieefV~~Le~PRkI~l   73 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKT-DEFLAE-------RAKG-KNIVPAYSIEEFVASLEKPRKILL   73 (473)
T ss_pred             cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHH-HHHHHh-------CccC-CCccccCcHHHHHHHhcCCceEEE
Confidence            4699999999999999997 47899999999998764 333332       1111 1122345777764   55566777


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  303 (342)
                      .+-...- ..-+=++.+..|.+|=++|+-+...--|+..-.++|.+..|...+.-|.-.|-
T Consensus        74 MVkAG~~-VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe  133 (473)
T COG0362          74 MVKAGTP-VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE  133 (473)
T ss_pred             EEecCCc-HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence            7654311 11122567888999999999999999999999999999999999999988876

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.68  E-value=0.0047  Score=50.40  Aligned_cols=95  Identities=11%  Similarity=0.115  Sum_probs=52.8

Q ss_pred             EEEEEc-cChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEEEE
Q 019328          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvGIiG-~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV~l  242 (342)
                      ++||+| .|.+|+.+++.+...=+.++.+. +++.... ......+.      .....  ......+++  ..++|+|++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~DvV~~   71 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAG-KRVSEAGP------HLKGEVVLELEPEDFE--ELAVDIVFL   71 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcC-cCHHHHCc------ccccccccccccCChh--hcCCCEEEE
Confidence            589999 59999999998743236777665 4332110 01000000      00000  000112232  258999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      |+|... +...+. .....+++|.++|++|
T Consensus        72 ~~~~~~-~~~~~~-~~~~~~~~g~~viD~s   99 (122)
T smart00859       72 ALPHGV-SKEIAP-LLPKAAEAGVKVIDLS   99 (122)
T ss_pred             cCCcHH-HHHHHH-HHHhhhcCCCEEEECC
Confidence            999553 333221 2345679999999997

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.66  E-value=0.005  Score=55.53  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      -+|.||+|.|||-|..|..=++.+ ...|++|+++++...++...+.+.       .. ..+.. .....+++. .+++|
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~-------~~-i~~~~-~~~~~~~~~-~~~lv   76 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE-------GK-IKWIE-REFDAEDLD-DAFLV   76 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh-------cC-cchhh-cccChhhhc-CceEE
Confidence            479999999999999999999998 589999999999875444333221       11 11111 122344444 49999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +.+++..+     +|+..++..++-.+++|+.
T Consensus        77 iaAt~d~~-----ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          77 IAATDDEE-----LNERIAKAARERRILVNVV  103 (210)
T ss_pred             EEeCCCHH-----HHHHHHHHHHHhCCceecc
Confidence            99988554     6666777777767777763

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.66  E-value=0.0053  Score=54.93  Aligned_cols=98  Identities=22%  Similarity=0.251  Sum_probs=60.6

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh------------------HHHHHHhhhhhhhccCCCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-.                  ..+...+.....   .....
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~v~   92 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL---NSDIQ   92 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh---CCCCE
Confidence            4699999999999999999999984 6786 78899876210                  000000000000   00000


Q ss_pred             ccc----cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCC
Q 019328          222 VTW----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       222 ~~~----~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk  263 (342)
                      ...    ....+++++++++|+|+.|+. +.+++.++++...+..+
T Consensus        93 i~~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i  137 (202)
T TIGR02356        93 VTALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT  137 (202)
T ss_pred             EEEehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence            000    011245678899999998875 56778888776655444

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.63  E-value=0.012  Score=58.68  Aligned_cols=120  Identities=11%  Similarity=0.099  Sum_probs=69.8

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhccCCCCCc----ccc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPV----TWK  225 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~  225 (342)
                      |.+|.|+||.|.|+|++|...|+.| ..+|++|++.+.+..          .... +...+.... .......    +. 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~-~~~v~~~~~~~ga-  298 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLY-RGRIREYAEKYGC-  298 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhc-CCchhhhHhhcCC-
Confidence            4579999999999999999999998 689999998544110          0000 000000000 0000000    11 


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCC-Cc-EEEecCCCccCCHHHHHHHHHcC
Q 019328          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       226 ~~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~-ga-ilIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ...+.++++ ..|||++-|     .+.+.|+++...+++. |. +++--+.| +...++.....+.|
T Consensus       299 ~~i~~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg  359 (444)
T PRK14031        299 KYVEGARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK  359 (444)
T ss_pred             EEcCCcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence            112334443 468988766     4678899999888865 44 44445566 66666554444433

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.59  E-value=0.011  Score=54.92  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=45.6

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|+|+ |.||+.+++.+...-++++.+ +|+.+.....            .  ...+...+.+++++++.+|+|+.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~--~~~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------Q--GALGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------c--CCCCccccCCHHHhccCCCEEEEC
Confidence            47999998 999999999864334688664 7776543110            0  111222357899999899999988


Q ss_pred             CC
Q 019328          244 PV  245 (342)
Q Consensus       244 lp  245 (342)
                      .|
T Consensus        68 t~   69 (257)
T PRK00048         68 TT   69 (257)
T ss_pred             CC
Confidence            76

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.59  E-value=0.01  Score=54.80  Aligned_cols=88  Identities=14%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .++-|+|-|.+++.+|+.+ +.+|++|.++|+++....                         .  .-...++.+....|
T Consensus       101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~~-------------------------~--~~~~~~~~~~~~~~  152 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEFP-------------------------E--DLPDGVATLVTDEP  152 (246)
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCccccc-------------------------c--cCCCCceEEecCCH
Confidence            3799999999999999985 899999999998653100                         0  00123332222222


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                                .+.+..+.+++++|=+.++.-.|.+.|..+|.+...
T Consensus       153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence                      233344567788888889999999999999954444

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.56  E-value=0.033  Score=47.92  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=67.7

Q ss_pred             CCCEEEEEc--cChHHHHHHHHHHhcCCcEEEEEcCChh--hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvGIiG--~G~IG~~vA~~l~~a~g~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .|+||++||  .+++.++++..+ ..||+++....|..-  +......+.........+   .......++++.++++|+
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV   76 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence            489999999  389999999987 689999999988752  121122211111111111   112334799999999999


Q ss_pred             EEEcCCCC----cc-------cccccCHhHHccCCCCcEEEecC
Q 019328          240 ISLHPVLD----KT-------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~lplt----~~-------t~~li~~~~l~~mk~gailIN~s  272 (342)
                      |..-.--.    +.       ..-.++++.++.+|++++|.-+.
T Consensus        77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            98775531    10       11346889999999999998774

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.56  E-value=0.0056  Score=59.21  Aligned_cols=94  Identities=21%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh--------------------hHHHHHHhhhhhhhccC-C
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------------TRLEKFVTAYGQFLKAN-G  218 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~--------------------~~~~~~~~~~~~~~~~~-~  218 (342)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|+..-                    +..+...+.    ++.- .
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~----l~~inp   94 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEH----LRKINS   94 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHH----HHHHCC
Confidence            4699999999999999999999985 6786 7888888641                    000000000    0000 0


Q ss_pred             CCCcccc----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328          219 EQPVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       219 ~~~~~~~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~  260 (342)
                      .......    ...+++++++++|+|+.+.. +.+++.++|.-..+
T Consensus        95 ~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D-~~~~r~~in~~~~~  139 (338)
T PRK12475         95 EVEIVPVVTDVTVEELEELVKEVDLIIDATD-NFDTRLLINDLSQK  139 (338)
T ss_pred             CcEEEEEeccCCHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            0000000    11357888999999999984 67788777765544

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.56  E-value=0.036  Score=53.11  Aligned_cols=109  Identities=13%  Similarity=0.019  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCChhh------HHHHHHhhhh---hhhccCCCCC-------c-cccccC--CHHHHhhc
Q 019328          176 IGSAYARMMVEGFKMNLIYYDLYQAT------RLEKFVTAYG---QFLKANGEQP-------V-TWKRAS--SMDEVLRE  236 (342)
Q Consensus       176 IG~~vA~~l~~a~g~~V~~~d~~~~~------~~~~~~~~~~---~~~~~~~~~~-------~-~~~~~~--~l~ell~~  236 (342)
                      ||..+|..++ ..|.+|..||+++..      ..+.......   ......+...       . ......  ++.+.+++
T Consensus         1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~   79 (314)
T PRK08269          1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD   79 (314)
T ss_pred             CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence            6889999875 669999999998732      0111000000   0001111100       0 011112  25688899


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                      ||+|+-++|-+.+.+.-+-.+..+.++|+++|  +|.-+.+....|.+.++
T Consensus        80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         80 ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            99999999999999998888888899999999  44555566777888775

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.52  E-value=0.011  Score=48.05  Aligned_cols=101  Identities=13%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             CEEEEEc----cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG----~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      |+++|||    -|..|..+.+.| +..|.+|+..+|....-                   .+...+.+++|.-...|+++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence            6899999    799999999998 57999999999875421                   12234678888558899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      +++|- +.+..++.  .+..+..+.+++..+    ..++++.+.+++..+.-
T Consensus        61 v~~~~-~~~~~~v~--~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v  105 (116)
T PF13380_consen   61 VCVPP-DKVPEIVD--EAAALGVKAVWLQPG----AESEELIEAAREAGIRV  105 (116)
T ss_dssp             E-S-H-HHHHHHHH--HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred             EEcCH-HHHHHHHH--HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence            99992 22333332  233346778888887    66777888877766543

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.50  E-value=0.35  Score=46.66  Aligned_cols=106  Identities=18%  Similarity=0.234  Sum_probs=63.7

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|+||++||-+  ++.++++..+ ..||++|....|..-...+.+.+......+..+   .......+++++++++|+
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv  227 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADV  227 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999997  7888888886 689999998887532111111111000001111   122335789999999999


Q ss_pred             EEEcCCCC--c-----c-----cccccCHhHHc-cCCCCcEEEec
Q 019328          240 ISLHPVLD--K-----T-----TYHLINKERLA-TMKKEAILVNC  271 (342)
Q Consensus       240 V~l~lplt--~-----~-----t~~li~~~~l~-~mk~gailIN~  271 (342)
                      |..-+-..  .     +     ..--++++.++ .+|+++++.-+
T Consensus       228 vyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~  272 (331)
T PRK02102        228 IYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC  272 (331)
T ss_pred             EEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence            98853210  0     0     01234666676 46777776644

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.48  E-value=0.016  Score=46.28  Aligned_cols=83  Identities=18%  Similarity=0.167  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019328          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (342)
Q Consensus       176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~  255 (342)
                      -+..+++.| +..|++|.+|||..........   +   .     ..+.....++++.++.+|.|+++.+- ++-+.+--
T Consensus        18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~---~---~-----~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~   84 (106)
T PF03720_consen   18 PALELIEEL-KERGAEVSVYDPYVDEEEIKEL---G---K-----LEGVEVCDDLEEALKGADAVVLATDH-DEFRELDW   84 (106)
T ss_dssp             HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH---C---H-----HHCEEEESSHHHHHTTESEEEESS---GGGGCCGH
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccChHHHHhh---C---C-----ccceEEecCHHHHhcCCCEEEEEecC-HHHhccCH
Confidence            356788887 6889999999999765322110   0   0     01123346899999999999999983 34444333


Q ss_pred             HhHHccCCCCcEEEec
Q 019328          256 KERLATMKKEAILVNC  271 (342)
Q Consensus       256 ~~~l~~mk~gailIN~  271 (342)
                      .+..+.|+++.++|++
T Consensus        85 ~~~~~~~~~~~~iiD~  100 (106)
T PF03720_consen   85 EEIAKLMRKPPVIIDG  100 (106)
T ss_dssp             HHHHHHSCSSEEEEES
T ss_pred             HHHHHhcCCCCEEEEC
Confidence            4556778899999987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.46  E-value=0.0088  Score=60.17  Aligned_cols=119  Identities=18%  Similarity=0.211  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      -+.+++|+|+|+|..|+++|+.| +..|++|.++|.+...........    ++..+   ..........+.+..+|+|+
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~~----l~~~g---i~~~~~~~~~~~~~~~dlVV   82 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSNE----LKELG---VKLVLGENYLDKLDGFDVIF   82 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHHH----HHhCC---CEEEeCCCChHHhccCCEEE
Confidence            46689999999999999999997 699999999998753211110000    11111   11111122235557899998


Q ss_pred             EcCCCCccccc-----------ccCH-hHH-ccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          242 LHPVLDKTTYH-----------LINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       242 l~lplt~~t~~-----------li~~-~~l-~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      .. |.-+.+.-           ++++ +.+ +..+...+-|-=+.|..--..-|...|+..
T Consensus        83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~  142 (458)
T PRK01710         83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE  142 (458)
T ss_pred             EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            87 43332222           1222 122 222334455655678877777777777753

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.44  E-value=0.02  Score=57.08  Aligned_cols=123  Identities=14%  Similarity=0.133  Sum_probs=73.3

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEE--------EcCChhh--H---HHHHHhhhhhhhccC-CCCCcccc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQAT--R---LEKFVTAYGQFLKAN-GEQPVTWK  225 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~--------~d~~~~~--~---~~~~~~~~~~~~~~~-~~~~~~~~  225 (342)
                      |.+|.|+||.|=|+|++|+..|+.| ..+|++|++        ||+.--.  .   ..++.+..+...... ...+ +..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~  300 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GST  300 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCE
Confidence            3479999999999999999999998 689999999        7855211  1   111111111000000 0000 111


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccCC--CCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       226 ~~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk--~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      . .+.++++ ..||+.+-|     .+.+.|+.+...++.  +=.+++--+-| ++..+|- +.|.+..|.
T Consensus       301 ~-i~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~  362 (445)
T PRK14030        301 F-FAGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL  362 (445)
T ss_pred             E-cCCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence            1 1233333 458888766     467889998888873  23466677777 5555543 666666553

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.41  E-value=0.018  Score=55.80  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhh--hhhccC--C--CCCccccccCCHHHHhhcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYG--QFLKAN--G--EQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~--~~~~~~--~--~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+|||+|+|+||+.+++.+...-++++.+. |+.+. ........++  ......  .  ....+.....++++++..+|
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~-~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD   80 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPD-YEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD   80 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChH-HHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence            379999999999999998744457887765 44432 1111111011  000000  0  00011222356888888999


Q ss_pred             EEEEcCCC
Q 019328          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~lpl  246 (342)
                      +|+.|.|.
T Consensus        81 VVIdaT~~   88 (341)
T PRK04207         81 IVVDATPG   88 (341)
T ss_pred             EEEECCCc
Confidence            99999873

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.39  E-value=0.019  Score=54.61  Aligned_cols=126  Identities=12%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+|||.|.+|..+|..++. +++ +|..+|++.........+ ......... .........+.+ .++.||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~d-l~~~~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALD-IAEAAPVEG-FDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHH-HHhhhhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence            589999999999999998752 234 999999976532111111 100000000 011111224564 479999999985


Q ss_pred             --CCCcc-c--------ccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEE
Q 019328          245 --VLDKT-T--------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG  295 (342)
Q Consensus       245 --plt~~-t--------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaa  295 (342)
                        |..+. +        ..++.  .+.+....|.+++|+++--.=+-...+.+.  +...++.|.+
T Consensus        79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g  144 (307)
T PRK06223         79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA  144 (307)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence              32221 1        01110  112333346778888864433333344432  2224677765

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.36  E-value=0.012  Score=56.21  Aligned_cols=125  Identities=16%  Similarity=0.183  Sum_probs=69.8

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCC-ccccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQP-VTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+|+|||.|.+|..+|-.|+ ++..-++..||.+.+..... ....    .+.. ... .......+.++ ++.||+|++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~-a~Dl----~~~~~~~~~~~v~~~~dy~~-~~~adivvi   77 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGE-AMDL----QHGSAFLKNPKIEADKDYSV-TANSKVVIV   77 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHH-HHHH----HHhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence            48999999999999998764 34445899999876432111 1111    1111 000 11122245665 799999999


Q ss_pred             cCC--CCc-ccccc-c--CH-------hHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEEe
Q 019328          243 HPV--LDK-TTYHL-I--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVGL  296 (342)
Q Consensus       243 ~lp--lt~-~t~~l-i--~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaal  296 (342)
                      +.-  ..+ +||.- +  |.       +.+....|.+++|+++---=+-...+.+.  +...++.|.+.
T Consensus        78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt  146 (312)
T cd05293          78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGC  146 (312)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCc
Confidence            633  222 34421 1  11       33444578999999983222222233333  44556676643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.32  E-value=0.0044  Score=52.21  Aligned_cols=121  Identities=17%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCcccc-ccCCHHHHhhcCCEEEEcCC
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVISLHPV  245 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~ell~~sDiV~l~lp  245 (342)
                      |+|+|.|.||..+|-+|+ ..|.+|..+++.. . .+.. ...+..+.... ....... ...+..+-....|+|++|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~-~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSP-R-LEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHH-HTTCEEEEEESHH-H-HHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHH-HCCCceEEEEccc-c-HHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            689999999999999984 6899999999876 2 1221 11121121111 0000001 11112346788999999987


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEE
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaa  295 (342)
                      .. ++...+.. ....+++++.++-.--| +-.++.|.+.+...++.++.
T Consensus        77 a~-~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   77 AY-QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             GG-GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             cc-chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            43 34444433 44455677677766555 44566777676555555544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.29  E-value=0.016  Score=54.53  Aligned_cols=79  Identities=18%  Similarity=0.096  Sum_probs=51.8

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|+++.|||.|.+|+.++..| ...|+ +|..++|+.++. +...+.++..   .....  .....++.+.+.++|+|
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~~~---~~~~~--~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGVQV---GVITR--LEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhhhc---Cccee--ccchhhhhhcccCCCEE
Confidence            46789999999999999999997 57887 699999987542 2222222110   00000  00012344566889999


Q ss_pred             EEcCCCC
Q 019328          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~lplt  247 (342)
                      +.+.|..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9999964

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.26  E-value=0.014  Score=56.06  Aligned_cols=129  Identities=15%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      +..++|+|||.|.+|..+|..++ ..| .+|..+|.+++.......+.... ..... .........+.+ .++.||+|+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~-~~~~I~~~~d~~-~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NVIAG-SNSKVIGTNNYE-DIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hhccC-CCeEEEECCCHH-HhCCCCEEE
Confidence            45579999999999999999864 445 48999999876421111111110 00000 111122234664 569999999


Q ss_pred             EcC--CCCcc--------------cccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHH--cCCccEEE
Q 019328          242 LHP--VLDKT--------------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG  295 (342)
Q Consensus       242 l~l--plt~~--------------t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~--~g~i~gaa  295 (342)
                      ++.  |..+.              +..++.  .+.+....|.+++||++--.=+-...+.+...  ..++.|.+
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            975  22111              111111  12344445788999998433333444444332  34677776

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.26  E-value=0.34  Score=46.89  Aligned_cols=106  Identities=12%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|++|++||-+  ++.++++..+ ..||+++.+..|..-...+.+.+......+..   +.......++++.++++|+
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~---g~~i~~~~d~~ea~~~aDv  228 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKN---GGNITLTEDIAEGVKGADF  228 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHc---CCeEEEEcCHHHHhCCCCE
Confidence            5789999999976  6889999986 58999999988753211111111100001111   1123345799999999999


Q ss_pred             EEEcCCCCcc-------------cccccCHhHHccC-CCCcEEEec
Q 019328          240 ISLHPVLDKT-------------TYHLINKERLATM-KKEAILVNC  271 (342)
Q Consensus       240 V~l~lplt~~-------------t~~li~~~~l~~m-k~gailIN~  271 (342)
                      |..-.-....             ..-.++++.++.. |++++|.-+
T Consensus       229 vytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc  274 (336)
T PRK03515        229 IYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHC  274 (336)
T ss_pred             EEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECC
Confidence            9885321110             0122455666663 666666554

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.23  E-value=0.019  Score=57.30  Aligned_cols=119  Identities=23%  Similarity=0.288  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++.+|++.|+|.|.+|..+|+.| ...|++|.++|+..........+.    +...+   .........++....+|+|+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~---~~~~~~~~~~~~~~~~d~vv   73 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELG---IELVLGEYPEEFLEGVDLVV   73 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcC---CEEEeCCcchhHhhcCCEEE
Confidence            46899999999999999999998 589999999999753322211111    11111   11111223345677899999


Q ss_pred             EcCCCCcccccc----------cC-HhHHcc-CCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          242 LHPVLDKTTYHL----------IN-KERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~~l----------i~-~~~l~~-mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      .+.-..+...-+          +. .+.+.. .+...+-|-=+.|..--..-|...|+.
T Consensus        74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            875433332211          11 112222 232344444467888777777788865

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.21  E-value=0.095  Score=49.97  Aligned_cols=105  Identities=19%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      +.|.||+++|= +++-++.+..+ ..||++|....|..-...+...+.........   +.......++++.+++||+|.
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~~a~~~aDvvy  221 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKEN---GGSVELTHDPVEAVKGADVIY  221 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHc---CCeEEEEcCHHHHhCCCCEEE
Confidence            78999999997 68888888886 68999999988753211111111100000111   112334579999999999998


Q ss_pred             EcCCC--Cc-----c-----cccccCHhHHccCCCCcEEEec
Q 019328          242 LHPVL--DK-----T-----TYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       242 l~lpl--t~-----~-----t~~li~~~~l~~mk~gailIN~  271 (342)
                      .-.-.  ..     +     ..-.++++.++.+|+++++.-+
T Consensus       222 ~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC  263 (304)
T ss_pred             EcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence            74311  10     0     1124577777777777777654

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.17  E-value=0.014  Score=58.04  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=63.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .++|.|||+|.+|.++|+.| +..|.+|.++|++.......   .+   .      ..  ......+.+..++|+++.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~---~~---~------~~--~~~~~~~~~~~~~dlvV~s~   67 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC---PY---I------HE--RYLENAEEFPEQVDLVVRSP   67 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh---HH---H------hh--hhcCCcHHHhcCCCEEEECC
Confidence            46899999999999999997 68999999999875421100   00   0      00  00123344557799988887


Q ss_pred             CCCccccc-----------ccCHhH--Hcc--C-CCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          245 VLDKTTYH-----------LINKER--LAT--M-KKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 plt~~t~~-----------li~~~~--l~~--m-k~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      +..+. ..           ++.+..  +..  + +...+=|-=+-|..=-..-|...|+.
T Consensus        68 gi~~~-~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         68 GIKKE-HPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCCCC-cHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence            65432 21           222211  111  2 11234444456776666667777765

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.17  E-value=0.015  Score=58.51  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      -+|.|++|.|||-|.++..=++.| ..+|++|.++.|...+....+..        .+.  ..+....--++.+..+++|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~--------~~~--i~~~~~~~~~~dl~~~~lv   76 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD--------AGM--LTLVEGPFDESLLDTCWLA   76 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChHHhCCCEEE
Confidence            489999999999999999988887 57999999999876554333211        111  1111111123456889998


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +.+....+     +|++..+..+...+++|++
T Consensus        77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         77 IAATDDDA-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             EECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence            88877544     4444444444444555543

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.10  E-value=1.2  Score=43.02  Aligned_cols=106  Identities=12%  Similarity=0.132  Sum_probs=64.8

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|++|++||-+  ++.++.+..+ ..||++|.+..|..-...+.+.+......+..+   .......++++.++.+|+
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv  228 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF  228 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999976  7889998886 589999998887531111111111100011111   123345789999999999


Q ss_pred             EEEcCCCC----c----c-----cccccCHhHHccC-CCCcEEEec
Q 019328          240 ISLHPVLD----K----T-----TYHLINKERLATM-KKEAILVNC  271 (342)
Q Consensus       240 V~l~lplt----~----~-----t~~li~~~~l~~m-k~gailIN~  271 (342)
                      |..-.-..    .    +     -.--++++.++.. |++++|.-+
T Consensus       229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc  274 (334)
T PRK12562        229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC  274 (334)
T ss_pred             EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence            98864210    0    0     0123467777774 677777765

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.09  E-value=0.0088  Score=58.66  Aligned_cols=73  Identities=25%  Similarity=0.317  Sum_probs=44.9

Q ss_pred             EEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCC--CccccccCCHHHHhhcCCEEEEcC
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      |+|+|.|.+|+.+++.|++.... +|.+.||+.++.. ...+..    ......  ........+++++++++|+|+.|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAE-RLAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-HHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-HHHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            68999999999999998655556 8999999986522 111100    000000  001111234788999999999999


Q ss_pred             C
Q 019328          245 V  245 (342)
Q Consensus       245 p  245 (342)
                      |
T Consensus        76 g   76 (386)
T PF03435_consen   76 G   76 (386)
T ss_dssp             S
T ss_pred             c
Confidence            8

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.06  E-value=0.11  Score=50.23  Aligned_cols=106  Identities=11%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|++|++||=+  ++.++.+..+ ..||++|.+..|..-...+...+......+.   .+.......++++.+++||+
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~---~g~~~~~~~d~~~a~~~aDv  228 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKE---SGARITVTDDIDKAVKGVDF  228 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHH---cCCeEEEEcCHHHHhCCCCE
Confidence            4789999999986  5788888876 5899999998875321111111000000011   11123345799999999999


Q ss_pred             EEEcC----CCCcc---c------ccccCHhHHccC-CCCcEEEec
Q 019328          240 ISLHP----VLDKT---T------YHLINKERLATM-KKEAILVNC  271 (342)
Q Consensus       240 V~l~l----plt~~---t------~~li~~~~l~~m-k~gailIN~  271 (342)
                      |..-.    ....+   .      .-.++++.++.. |++++|.-+
T Consensus       229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~  274 (334)
T PRK01713        229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC  274 (334)
T ss_pred             EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence            98742    11000   1      122577788875 788888765

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.05  E-value=0.16  Score=49.41  Aligned_cols=79  Identities=19%  Similarity=0.216  Sum_probs=48.5

Q ss_pred             ccCCCEEEEEccC--------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328          162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       162 ~l~gktvGIiG~G--------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (342)
                      .+.|+||+|+|.|        ++.++++..+ ..||++|....|..-...+...+......+..   +.......++++.
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~---g~~~~~~~d~~ea  242 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAEN---GGKFNIVNSMDEA  242 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHc---CCeEEEEcCHHHH
Confidence            4789999999854        3446777776 58999999998763211111111000001111   1123345799999


Q ss_pred             hhcCCEEEEcC
Q 019328          234 LREADVISLHP  244 (342)
Q Consensus       234 l~~sDiV~l~l  244 (342)
                      ++++|+|..-.
T Consensus       243 ~~~aDvvyt~~  253 (357)
T TIGR03316       243 FKDADIVYPKS  253 (357)
T ss_pred             hCCCCEEEECC
Confidence            99999998763

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.02  E-value=0.017  Score=52.63  Aligned_cols=107  Identities=22%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHH---HH--H-hhhh--------hhhccCC-CCCccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE---KF--V-TAYG--------QFLKANG-EQPVTW  224 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~---~~--~-~~~~--------~~~~~~~-~~~~~~  224 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-....   .+  . +..+        ..++.-. ...+..
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~   95 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA   95 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            4699999999999999999999985 6676 67778765311000   00  0 0000        0000000 000000


Q ss_pred             c----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       225 ~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .    ...+++++++++|+|+.|+. +++++.++++...+.   +.-+|..+
T Consensus        96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g  143 (228)
T cd00757          96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA  143 (228)
T ss_pred             ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence            0    11345678899999999987 667887777665543   45566654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.01  E-value=0.26  Score=46.28  Aligned_cols=151  Identities=21%  Similarity=0.225  Sum_probs=95.8

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcC----Cc-------EEEEEcCChh-----hHHHHHHhhhhhhhccCCCCCcc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVT  223 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~----g~-------~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  223 (342)
                      |..|...++.|+|.|.-|-.+|+.|. ..    |+       +++.+|+.--     .....+...|   .+....    
T Consensus        20 g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~---a~~~~~----   91 (279)
T cd05312          20 GKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPF---ARKDEE----   91 (279)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHH---HhhcCc----
Confidence            45788999999999999999999874 44    66       7999997721     1111222222   111110    


Q ss_pred             ccccCCHHHHhh--cCCEEEEcCCCCcccccccCHhHHccCC---CCcEEEecCCCccCCHHHHHHHHH--cCC-ccEEE
Q 019328          224 WKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK--QNP-MFRVG  295 (342)
Q Consensus       224 ~~~~~~l~ell~--~sDiV~l~lplt~~t~~li~~~~l~~mk---~gailIN~sRG~~vd~~aL~~aL~--~g~-i~gaa  295 (342)
                       ....+|.|+++  +.|+++=+-    ..-++|+++.++.|.   +.+++.=.|+-...-|-.-.+|.+  +|+ |.+.|
T Consensus        92 -~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATG  166 (279)
T cd05312          92 -KEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASG  166 (279)
T ss_pred             -ccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeC
Confidence             12368999999  889987642    124789999999998   899999999876643433333333  244 66655


Q ss_pred             eecCCCCCCC-CCCccCCCceEEcCCCCC
Q 019328          296 LDVFEDEPYM-KPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       296 lDV~~~EP~~-~~~L~~~~nvi~TPHia~  323 (342)
                      .-.-+.+..- ...--+..|+++-|-++-
T Consensus       167 sPf~pv~~~Gr~~~p~Q~NN~~iFPGigl  195 (279)
T cd05312         167 SPFPPVEYNGKTYVPGQGNNAYIFPGIGL  195 (279)
T ss_pred             CCCCCeeeCCeEecCCCcceeeeccchhh
Confidence            3211111110 113456789999998874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.98  E-value=0.06  Score=52.65  Aligned_cols=161  Identities=14%  Similarity=0.163  Sum_probs=97.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh--------hhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ++|.|+|.|=.|...+-.+ ..+|.+|+.+|..+++- +....        +..+.++.....+ ......+.++.++.+
T Consensus         1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV-~~ln~g~~PI~EpgLe~ll~~~~~~g-Rl~fTtd~~~a~~~a   77 (414)
T COG1004           1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKV-ELLNKGISPIYEPGLEELLKENLASG-RLRFTTDYEEAVKDA   77 (414)
T ss_pred             CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHH-HHHhCCCCCCcCccHHHHHHhccccC-cEEEEcCHHHHHhcC
Confidence            4799999999999999998 58999999999886542 11100        1111222211111 012346788899999


Q ss_pred             CEEEEcCCCCcccccccC--------HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee-cCCCCCCCC-C
Q 019328          238 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDEPYMK-P  307 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~--------~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD-V~~~EP~~~-~  307 (342)
                      |++++++|..+.-.+-+|        ++..+.++..+++|+=|+-.+=-.+.+.+-+.+..-.. -++ ++.+|-+.+ +
T Consensus        78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~  156 (414)
T COG1004          78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGS  156 (414)
T ss_pred             CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcc
Confidence            999999996555455444        34556677779999999988776776666655543222 233 234444432 1


Q ss_pred             ---CccCCCceEEcCCCCCCcHHHHHHHHH
Q 019328          308 ---GLSEMKNAIVVPHIASASKWTREGMAT  334 (342)
Q Consensus       308 ---~L~~~~nvi~TPHia~~t~~~~~~~~~  334 (342)
                         ..+.-+++++    |..+..+.+.|.+
T Consensus       157 Av~D~~~PdRIVi----G~~~~~a~~~~~e  182 (414)
T COG1004         157 AVYDFLYPDRIVI----GVRSERAAAVLRE  182 (414)
T ss_pred             hhhhccCCCeEEE----ccCChhHHHHHHH
Confidence               2444456664    4444444444443

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=95.98  E-value=0.01  Score=58.03  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .++|||||-|..|+.+++.+ +.+|.+|+++|+++..
T Consensus         2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~   37 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS   37 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            47999999999999999985 7899999999988643

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.96  E-value=0.024  Score=54.26  Aligned_cols=102  Identities=17%  Similarity=0.170  Sum_probs=58.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCC-CccccccCCHHHHhhcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+++|+|||.|.+|..+|-.| ...|.  ++..+|.+..... ......    .+.... ........+. +.+++||+|
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~-g~~~Dl----~~~~~~~~~~~i~~~~~-~~~~~adiv   77 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAE-GDAMDL----SHAVPFTSPTKIYAGDY-SDCKDADLV   77 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhH-HHHHHH----HhhccccCCeEEEeCCH-HHhCCCCEE
Confidence            467999999999999999987 45565  8999998765321 111111    111100 0001112344 457999999


Q ss_pred             EEcC--CCCc-ccccc-c--C-------HhHHccCCCCcEEEecC
Q 019328          241 SLHP--VLDK-TTYHL-I--N-------KERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~l--plt~-~t~~l-i--~-------~~~l~~mk~gailIN~s  272 (342)
                      +++.  |..| ++|.- +  |       .+.+..-.|.+++|+++
T Consensus        78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            9874  3322 23311 1  1       12233344788999987

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.96  E-value=0.015  Score=53.03  Aligned_cols=77  Identities=19%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~l~l  244 (342)
                      +++.|+|+|..|..+|+.| ...|..|+..|+++....+...+.+....    ... ......-|.++ +.++|+++.+.
T Consensus         1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~----v~g-d~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHV----VIG-DATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEE----EEe-cCCCHHHHHhcCCCcCCEEEEee
Confidence            5799999999999999998 69999999999987653221111111000    000 00112234555 68899999998


Q ss_pred             CCCc
Q 019328          245 VLDK  248 (342)
Q Consensus       245 plt~  248 (342)
                      ..+.
T Consensus        75 ~~d~   78 (225)
T COG0569          75 GNDE   78 (225)
T ss_pred             CCCH
Confidence            8544

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.95  E-value=0.018  Score=63.06  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=47.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcE-------------EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      ..|+|+|||.|.||+..|+.|++.-+.+             |.+.|++.... +...+.+      .+...... .+.+.
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~l-Dv~D~  639 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQL-DVSDS  639 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEe-ecCCH
Confidence            4789999999999999999985443444             88899987542 2222111      01000111 12344


Q ss_pred             HH---HhhcCCEEEEcCCC
Q 019328          231 DE---VLREADVISLHPVL  246 (342)
Q Consensus       231 ~e---ll~~sDiV~l~lpl  246 (342)
                      ++   +++++|+|++++|.
T Consensus       640 e~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        640 ESLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHHhhcCCCEEEECCCc
Confidence            44   44689999999994

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.93  E-value=0.071  Score=50.63  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .|++++|||-=.=-..++++| .+.|++|+.+.-....        |         ...+.....+.++++++||+|++-
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~--------~---------~~~g~~~~~~~~~~~~~ad~ii~~   62 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD--------H---------GFTGATKSSSLEEALSDVDVIILP   62 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc--------c---------ccCCceeeccHHHHhccCCEEEEC
Confidence            478999999988888999998 6889998865321110        0         011223345678899999999999


Q ss_pred             CCCCcccc---c-------ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          244 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       244 lplt~~t~---~-------li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      +|.+.+..   .       -++.+.+++|++|..++ ++.+.   .. +-+.+++.++..
T Consensus        63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~  117 (296)
T PRK08306         63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL  117 (296)
T ss_pred             CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence            88754431   1       13578999999998544 34433   22 335555666654

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.92  E-value=0.2  Score=46.36  Aligned_cols=152  Identities=12%  Similarity=0.093  Sum_probs=95.2

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCc-----------EEEEEcCChh---hH--HHHHHhhhhhhhccCCCCCcc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------NLIYYDLYQA---TR--LEKFVTAYGQFLKANGEQPVT  223 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-----------~V~~~d~~~~---~~--~~~~~~~~~~~~~~~~~~~~~  223 (342)
                      |+.|...++.|+|.|.-|-.+|+.|. ..++           +++.+|+.--   .+  ...+...+..+.+.       
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-------   91 (254)
T cd00762          20 KKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANP-------   91 (254)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCc-------
Confidence            35788999999999999999999874 4444           6888887620   00  11111111001111       


Q ss_pred             ccccCCHHHHhh--cCCEEEEcCCCCcccccccCHhHHccCC---CCcEEEecCCCccC---CHHHHHHHHHcCCccEEE
Q 019328          224 WKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVI---DEVALVEHLKQNPMFRVG  295 (342)
Q Consensus       224 ~~~~~~l~ell~--~sDiV~l~lplt~~t~~li~~~~l~~mk---~gailIN~sRG~~v---d~~aL~~aL~~g~i~gaa  295 (342)
                      .....+|.|+++  +.|+++=.-    ..-++|.++.++.|.   +.+++.=.|+-..-   ..++.+++=+...|.+.|
T Consensus        92 ~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtG  167 (254)
T cd00762          92 ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASG  167 (254)
T ss_pred             ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEEC
Confidence            012358999999  999987642    225799999999999   89999999887763   334444443333455554


Q ss_pred             eecCCCCCCCC-CCccCCCceEEcCCCCC
Q 019328          296 LDVFEDEPYMK-PGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       296 lDV~~~EP~~~-~~L~~~~nvi~TPHia~  323 (342)
                      --.+.++-.-. -..-+..|+++-|-++-
T Consensus       168 spf~pv~~~g~~~~~~Q~NN~~iFPGigl  196 (254)
T cd00762         168 SPFHPVELNGGTYKPGQGNNLYIFPGVAL  196 (254)
T ss_pred             CCCCCcccCCceeecccccceeeccchhh
Confidence            42222222100 13447789999998874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.92  E-value=0.022  Score=54.05  Aligned_cols=124  Identities=12%  Similarity=0.218  Sum_probs=63.6

Q ss_pred             EEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC-
Q 019328          168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV-  245 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp-  245 (342)
                      |+|||.|.+|..+|..++. +++ +|+.+|++++.. ............... .........+.+ .++.||+|+++.. 
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~-~g~~~dl~~~~~~~~-~~~~I~~t~d~~-~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLP-QGKALDISQAAPILG-SDTKVTGTNDYE-DIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHH-HHHHHHHHHhhhhcC-CCeEEEEcCCHH-HhCCCCEEEEecCC
Confidence            6899999999999998642 334 999999986532 111110000000000 011112224555 4799999999863 


Q ss_pred             -CCcc-c--------ccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHH--HcCCccEEE
Q 019328          246 -LDKT-T--------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRVG  295 (342)
Q Consensus       246 -lt~~-t--------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL--~~g~i~gaa  295 (342)
                       ..+. +        ..++.  .+.+....|.+++|+++--.-+-...+.+..  ...++.|.+
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence             2211 1        11110  1233444577888888733323333333332  223566666

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.90  E-value=0.072  Score=53.25  Aligned_cols=123  Identities=19%  Similarity=0.169  Sum_probs=68.5

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCCh---------hhHH---HHHHhhh-hhhhccCCCCCcccc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRL---EKFVTAY-GQFLKANGEQPVTWK  225 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~---------~~~~---~~~~~~~-~~~~~~~~~~~~~~~  225 (342)
                      +.++.|+||.|=|+|++|+..|+.| ..+|++|+ +.|.+-         ....   .+..... +....... ...+..
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~-~~~~a~  309 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAK-HSSTAK  309 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhh-ccCCcE
Confidence            3579999999999999999999997 68999999 445440         1111   0000000 00000000 000111


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccC-CCCcEEE-ecCCCccCCHHHHHHHHHcCCcc
Q 019328          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEAILV-NCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       226 ~~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~m-k~gailI-N~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      . .+.++++ -.||+.+-|     .+.+.|+.+..+.+ +.++.+| --+-+++- .+ -.+.|++..|.
T Consensus       310 ~-~~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t-~e-A~~~L~~~GI~  371 (454)
T PTZ00079        310 Y-VPGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTT-IE-ATHLFKKNGVI  371 (454)
T ss_pred             E-eCCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCC-HH-HHHHHHHCCcE
Confidence            1 1222322 468988776     46788988887766 4455554 44556553 33 33556665543

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.86  E-value=0.027  Score=51.25  Aligned_cols=96  Identities=11%  Similarity=0.050  Sum_probs=59.4

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      --++.|++|.|||-|.++..=++.| ..+|++|.++.|...+....+..        .+...+.. +..+. +-+..+++
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~i~~~~-r~~~~-~dl~g~~L   88 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGNLKLIK-GNYDK-EFIKDKHL   88 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCCEEEEe-CCCCh-HHhCCCcE
Confidence            3578899999999999999988887 57999999999987654433211        01111111 11122 33577888


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      |+.+....+     +|+...+..+...+++|+
T Consensus        89 ViaATdD~~-----vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         89 IVIATDDEK-----LNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             EEECCCCHH-----HHHHHHHHHHHcCCeEEE
Confidence            888876333     444444444443445553

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.85  E-value=0.048  Score=54.08  Aligned_cols=89  Identities=20%  Similarity=0.268  Sum_probs=62.0

Q ss_pred             ccCCCEEEEEcc----------ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHH
Q 019328          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       162 ~l~gktvGIiG~----------G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      .+.|++|+|+|+          ..-...+++.| ...|++|.+|||........   .              .....+++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~--------------~~~~~~~~  371 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G--------------LPLIDDLE  371 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h--------------cccCCCHH
Confidence            479999999998          44678899998 68899999999986432110   0              01136888


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHhHHc-cCCCCcEEEec
Q 019328          232 EVLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNC  271 (342)
Q Consensus       232 ell~~sDiV~l~lplt~~t~~li~~~~l~-~mk~gailIN~  271 (342)
                      +.++.||.|+++.+-. +-+. ++-+.++ .|+ ..+++++
T Consensus       372 ~~~~~ad~~v~~t~~~-~~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       372 EALKGADALVILTDHD-EFKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HHHhCCCEEEEecCCH-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence            9999999999998733 3333 3444444 355 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.83  E-value=0.02  Score=57.09  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=48.0

Q ss_pred             CEEEEEccChHHHHHHH--HHH-h-cC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          166 QTVGVIGAGRIGSAYAR--MMV-E-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~--~l~-~-a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+|+|||.|.+|...+-  -++ . ++ |.+|..||+++..... ........+.. ...........++.+.++.||+|
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~-~~~~~~~~~~~-~~~~~~I~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLET-VEILAKKIVEE-LGAPLKIEATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHh-cCCCeEEEEeCCHHHHhcCCCEE
Confidence            37999999999998554  122 1 33 5699999998754211 11111111111 11112233356889999999999


Q ss_pred             EEcCCC
Q 019328          241 SLHPVL  246 (342)
Q Consensus       241 ~l~lpl  246 (342)
                      +.++|.
T Consensus        79 i~ai~~   84 (423)
T cd05297          79 INTIQV   84 (423)
T ss_pred             EEeeEe
Confidence            999983

linked to 3D####ucture

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.83  E-value=0.047  Score=51.98  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|+|+|.|.||.-+|-+| ...|.+|..++|.... .+.+...-|-.+...+.. ..+.....-.+.....|+|++++-
T Consensus         3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDRQR-LAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEechHH-HHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence            4799999999999999998 4678999999987532 222211101111111110 000000111123467899999987


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal  296 (342)
                      .. ++...+ +.....+.+++.++-.--| +-.++.+.+.+.+.++.++..
T Consensus        80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence            43 233322 3445556788887766444 345666777776666665544

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.76  E-value=0.094  Score=49.61  Aligned_cols=104  Identities=17%  Similarity=0.272  Sum_probs=59.1

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh--hHHHHHHhhhhhhhccCCCCCcccccc---CCHHHHhh
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLR  235 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~  235 (342)
                      ++.||++.|+|.|..+++++-.|+ ..|+ +|.+++|+..  .+.+.+.+.+..    ...........   ..+.+.+.
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~~~----~~~~~~~~~~~~~~~~l~~~~~  195 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNE----NTDCVVTVTDLADQQAFAEALA  195 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHhhh----ccCceEEEechhhhhhhhhhcc
Confidence            578899999999999999998764 5676 7999999853  222333222210    00000011111   11334566


Q ss_pred             cCCEEEEcCCCCcc--ccc-ccCHhHHccCCCCcEEEecC
Q 019328          236 EADVISLHPVLDKT--TYH-LINKERLATMKKEAILVNCS  272 (342)
Q Consensus       236 ~sDiV~l~lplt~~--t~~-li~~~~l~~mk~gailIN~s  272 (342)
                      ++|+|+.+.|..-.  +.. ++.  ....++++.++.++-
T Consensus       196 ~aDivINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~v  233 (288)
T PRK12749        196 SADILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV  233 (288)
T ss_pred             cCCEEEECCCCCCCCCCCCCCCC--cHHHCCCCCEEEEec
Confidence            89999999986321  111 111  113355666676664

>PRK11579 putative oxidoreductase; Provisional

Probab=95.73  E-value=0.037  Score=53.48  Aligned_cols=66  Identities=17%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~  241 (342)
                      .++||||+|.||+. .+..+.+.-++++. ++|+++....+    .+.           ....+.+++++++  .-|+|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~----~~~-----------~~~~~~~~~ell~~~~vD~V~   69 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA----DWP-----------TVTVVSEPQHLFNDPNIDLIV   69 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh----hCC-----------CCceeCCHHHHhcCCCCCEEE
Confidence            48999999999985 56654333478876 57877543211    110           1123579999996  479999


Q ss_pred             EcCCC
Q 019328          242 LHPVL  246 (342)
Q Consensus       242 l~lpl  246 (342)
                      +|+|.
T Consensus        70 I~tp~   74 (346)
T PRK11579         70 IPTPN   74 (346)
T ss_pred             EcCCc
Confidence            99994

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.72  E-value=0.073  Score=52.23  Aligned_cols=95  Identities=20%  Similarity=0.219  Sum_probs=57.3

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh------------------hhHHHHHHhhhhhhhccCCCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ------------------ATRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..                  ....+...+.+..   ......
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~---~np~v~  206 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAA---LNPDVQ  206 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHH---HCCCCE
Confidence            4689999999999999999999984 6777 688888761                  0111111111100   000000


Q ss_pred             cc-cc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328          222 VT-WK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       222 ~~-~~---~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~  260 (342)
                      +. ..   ...+++++++++|+|+.|+- +.+++.++++...+
T Consensus       207 v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~  248 (376)
T PRK08762        207 VEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK  248 (376)
T ss_pred             EEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            00 00   11245678889999888876 45677777665444

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.72  E-value=0.02  Score=48.30  Aligned_cols=103  Identities=21%  Similarity=0.362  Sum_probs=58.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|||. |.+|..+|-.|. +.++-++..+|+..... +............   .........+..+.+++||+|+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~-~g~a~Dl~~~~~~---~~~~~~i~~~~~~~~~~aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA-EGEALDLSHASAP---LPSPVRITSGDYEALKDADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH-HHHHHHHHHHHHG---STEEEEEEESSGGGGTTESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc-eeeehhhhhhhhh---cccccccccccccccccccEEEEe
Confidence            37999999 999999998764 36667899999986532 1111111100000   001111123556778999999998


Q ss_pred             C--CCCc-cccc-cc--CH-------hHHccCCCCcEEEecC
Q 019328          244 P--VLDK-TTYH-LI--NK-------ERLATMKKEAILVNCS  272 (342)
Q Consensus       244 l--plt~-~t~~-li--~~-------~~l~~mk~gailIN~s  272 (342)
                      .  |..+ ++|. ++  |.       +.+.+..|.++++.++
T Consensus        77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred             ccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence            6  4333 2221 11  11       2333445778888874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.71  E-value=0.05  Score=53.45  Aligned_cols=115  Identities=18%  Similarity=0.238  Sum_probs=72.4

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh----------HHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .++.|+||.|=|+|+.|+..|+.| ...|++|+++|-+..-          ......+..+......     +... .+-
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~-----ga~~-i~~  275 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYA-----GAEY-ITN  275 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhc-----CceE-ccc
Confidence            359999999999999999999997 5789999998766440          0000000000000000     1111 223


Q ss_pred             HHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       231 ~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ++++ ..|||.+-|     .+.+.|+.+...++|-. +++--+.|++- .+|--..++.|
T Consensus       276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG  328 (411)
T COG0334         276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG  328 (411)
T ss_pred             cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC
Confidence            5544 468887654     57888999999998877 77888888865 33333333444

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.71  E-value=0.04  Score=51.13  Aligned_cols=108  Identities=21%  Similarity=0.186  Sum_probs=64.8

Q ss_pred             cccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       159 ~g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .|.+|+..|++|+|+ |.||..+||.|+ +-+++....-|....+..+...    .+..    ..+.....|++..+.+.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la-~~~~~~~ll~r~aea~~rq~l~----~l~e----~~~~~~i~s~d~~~~~e  231 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLA-PKVGVKELLLRDAEARNRQRLT----LLQE----ELGRGKIMSLDYALPQE  231 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhc-cccCEEEEecccHHhhhhhhhh----hccc----ccCCCeeeecccccccc
Confidence            478999999999998 999999999984 6565544444332221111000    0111    11122235666666666


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHH
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~  280 (342)
                      |+++-...  -.+-..|+...   +|||+.+++-++-.=+|+.
T Consensus       232 ~i~v~vAs--~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         232 DILVWVAS--MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             ceEEEEee--cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence            66544322  12234455544   5899999999988766654

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.69  E-value=0.098  Score=49.80  Aligned_cols=108  Identities=23%  Similarity=0.311  Sum_probs=67.9

Q ss_pred             ccCCCEEEEEccC---hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~G---~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+.|++|+++|-|   ++.++.+..+ ..||++|....|..-...+.+.+.    .+.   .+.......++++.++.+|
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~---~G~~v~~~~d~~~a~~~aD  218 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKA---KGIKVRETESLEEVIDEAD  218 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHH---cCCEEEEECCHHHHhCCCC
Confidence            4789999999995   9999999986 689999999887542111111111    111   1122334579999999999


Q ss_pred             EEEEcCCCCc-----cc------ccccCHhHHccCCCCcEEEec-CCCccC
Q 019328          239 VISLHPVLDK-----TT------YHLINKERLATMKKEAILVNC-SRGPVI  277 (342)
Q Consensus       239 iV~l~lplt~-----~t------~~li~~~~l~~mk~gailIN~-sRG~~v  277 (342)
                      +|..---..+     +.      .--++++.++.+|++++|.-+ =||.=|
T Consensus       219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev  269 (301)
T TIGR00670       219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEI  269 (301)
T ss_pred             EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCccc
Confidence            9987421100     00      122466777778888777644 355433

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.68  E-value=0.02  Score=51.09  Aligned_cols=60  Identities=18%  Similarity=0.316  Sum_probs=44.3

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      +++|||- |.||+.+++.+ +..|+.|+                                        +++||+|++|+|
T Consensus         2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilavP   40 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSVP   40 (197)
T ss_pred             EEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeCC
Confidence            7999998 99999999997 78898773                                        246899999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      -. .+..     .++.+.  .++++++.-.
T Consensus        41 v~-~~~~-----~i~~~~--~~v~Dv~SvK   62 (197)
T PRK06444         41 ID-AALN-----YIESYD--NNFVEISSVK   62 (197)
T ss_pred             HH-HHHH-----HHHHhC--CeEEeccccC
Confidence            43 2233     333333  3788987644

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.64  E-value=0.021  Score=47.96  Aligned_cols=86  Identities=23%  Similarity=0.300  Sum_probs=50.3

Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt  247 (342)
                      +-|+|-|.+|+++++.+ +.+|++|.++|++++.                                +..++-+. +.+. 
T Consensus         1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~-   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP-   45 (136)
T ss_dssp             EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred             CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence            46899999999999985 8999999999987431                                01223221 2221 


Q ss_pred             cccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe
Q 019328          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       248 ~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal  296 (342)
                      ++..     +.+ .+.+++++| ++++.-.|.+.|.++|++ +....|+
T Consensus        46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence            1000     111 456677766 888999999999999887 4555554

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.57  E-value=0.19  Score=50.02  Aligned_cols=102  Identities=12%  Similarity=0.209  Sum_probs=66.9

Q ss_pred             ccCCCEEEEEccC---hHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~G---~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|+||++||-+   ++.++++..+ ..+ ||+|....|..-...+.+.+.    ++.   .+.......++++.++++
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~---~G~~v~~~~d~~eav~~A  309 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISR---NGHVIEQTDDLAAGLRGA  309 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHh---cCCeEEEEcCHHHHhCCC
Confidence            4889999999994   8899999886 455 999998887532111111111    111   112233457999999999


Q ss_pred             CEEEEcCCCCcc----------cccccCHhHHcc-CCCCcEEEec
Q 019328          238 DVISLHPVLDKT----------TYHLINKERLAT-MKKEAILVNC  271 (342)
Q Consensus       238 DiV~l~lplt~~----------t~~li~~~~l~~-mk~gailIN~  271 (342)
                      |+|....-..+.          ..-.++++.++. .|++++|.-+
T Consensus       310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc  354 (429)
T PRK11891        310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP  354 (429)
T ss_pred             CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence            999885421111          012357888888 8889888855

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.56  E-value=0.046  Score=55.50  Aligned_cols=114  Identities=21%  Similarity=0.214  Sum_probs=67.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+.|+++.|+|+|.+|.+.++.| +..|++|.++|..+.. .+.. .       ..+   ..........+.++.+|+|+
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~l-~-------~~g---~~~~~~~~~~~~l~~~D~VV   75 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRPH-A-------ERG---VATVSTSDAVQQIADYALVV   75 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHH-H-------hCC---CEEEcCcchHhHhhcCCEEE
Confidence            35789999999999999999986 7999999999976432 1111 1       111   11111112345567899988


Q ss_pred             EcCCCCcccc----------cccCHhHHc-cC-C------C-CcEEEecCCCccCCHHHHHHHHHc
Q 019328          242 LHPVLDKTTY----------HLINKERLA-TM-K------K-EAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~----------~li~~~~l~-~m-k------~-gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      .+-.-.+...          .++++-.+. .+ +      + ..+=|-=+-|..--..-+...|+.
T Consensus        76 ~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         76 TSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            8743223211          123332222 11 1      2 234454466887777777777775

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=95.53  E-value=0.28  Score=46.82  Aligned_cols=103  Identities=19%  Similarity=0.220  Sum_probs=63.8

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|++|+++|= +++.++.+..+ ..||++|....|..-.......+.+   .+..+   .......+++++++++|+|
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvv  221 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVV  221 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEE
Confidence            377899999998 78899999986 6899999998875321111111100   01111   1223457999999999999


Q ss_pred             EEcC----CCCc---c-----cccccCHhHHccCCCCcEEEec
Q 019328          241 SLHP----VLDK---T-----TYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       241 ~l~l----plt~---~-----t~~li~~~~l~~mk~gailIN~  271 (342)
                      ..-.    ....   +     ..--++++.++.+|+++++.-+
T Consensus       222 y~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp  264 (304)
T PRK00779        222 YTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC  264 (304)
T ss_pred             EecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence            8752    1101   0     1123466667777777666554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.52  E-value=0.047  Score=43.66  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=53.1

Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEEEEc
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH  243 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV~l~  243 (342)
                      +-|+|+|.+|+.+++.| +..+.+|.+.|+++...... .        ..+. ........+.+.+    ++++|.|+++
T Consensus         1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~~~-~--------~~~~-~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVEEL-R--------EEGV-EVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHHHH-H--------HTTS-EEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHHHH-H--------hccc-ccccccchhhhHHhhcCccccCEEEEc
Confidence            46999999999999998 56667999999987643221 1        1111 1111112233322    5789999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEE
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailI  269 (342)
                      .+...  .++.-...++.+.+...++
T Consensus        70 ~~~d~--~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   70 TDDDE--ENLLIALLARELNPDIRII   93 (116)
T ss_dssp             SSSHH--HHHHHHHHHHHHTTTSEEE
T ss_pred             cCCHH--HHHHHHHHHHHHCCCCeEE
Confidence            88443  4433344555555555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.52  E-value=0.064  Score=50.08  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=44.6

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|+| +|.||+.+++.+...-++++.+ +|+........   ..+.   -.+..+.+...+.+++++...+|+|+.+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~---~~~~---~~~~~~~gv~~~~d~~~l~~~~DvVIdf   75 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGT---DAGE---LAGIGKVGVPVTDDLEAVETDPDVLIDF   75 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCC---CHHH---hcCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence            3799999 7999999999875456788664 67432211000   0000   0011111223346888886679999999


Q ss_pred             CC
Q 019328          244 PV  245 (342)
Q Consensus       244 lp  245 (342)
                      .|
T Consensus        76 T~   77 (266)
T TIGR00036        76 TT   77 (266)
T ss_pred             CC
Confidence            86

>PRK12862 malic enzyme; Reviewed

Probab=95.51  E-value=0.51  Score=50.50  Aligned_cols=165  Identities=17%  Similarity=0.215  Sum_probs=108.7

Q ss_pred             CCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhc
Q 019328          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (342)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a  187 (342)
                      ..|+|.|+.-   +.+|=.+++-+++..|-.                     |+.+...+|.|.|.|.-|-.+|+.| ..
T Consensus       160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~~---------------------~~~~~~~~iv~~GaGaag~~~a~~l-~~  214 (763)
T PRK12862        160 MKIPVFHDDQ---HGTAIIVAAALLNGLKLV---------------------GKDIEDVKLVASGAGAAALACLDLL-VS  214 (763)
T ss_pred             CCCceEecCc---ccHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence            3589999843   234556777777776532                     4578899999999999999999998 56


Q ss_pred             CCc---EEEEEcCChh---hH---HHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH
Q 019328          188 FKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       188 ~g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~  258 (342)
                      .|.   +++.+|+.--   .+   ...+...|   .+.        ....+|+|+++.+|+++=.-     +-+.|+++.
T Consensus       215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~---a~~--------~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~  278 (763)
T PRK12862        215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARY---AQK--------TDARTLAEVIEGADVFLGLS-----AAGVLKPEM  278 (763)
T ss_pred             cCCCcccEEEEcCCCeeeCCCCccccHHHHHH---hhh--------cccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence            788   7999995520   00   11111111   111        11258999999999887542     258999999


Q ss_pred             HccCCCCcEEEecCCCccC-CHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCC
Q 019328          259 LATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       259 l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~  323 (342)
                      ++.|.+.+++.=.|.-..- ..+..+++ ..|.|.+.|-   ...      --+..|+++-|-++-
T Consensus       279 v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~------p~Q~NN~~~FPgi~~  334 (763)
T PRK12862        279 VKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGR---SDY------PNQVNNVLCFPYIFR  334 (763)
T ss_pred             HHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECC---cCC------CCcccceeeccchhh
Confidence            9999999999999887642 22222332 2234555541   111      135678999998763

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.49  E-value=0.032  Score=49.73  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~  198 (342)
                      +.|.+++|.|+|+|.+|.++++.|+ ..|. ++..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            5799999999999999999999985 6776 58888865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.42  E-value=0.048  Score=49.20  Aligned_cols=37  Identities=35%  Similarity=0.452  Sum_probs=31.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~  198 (342)
                      ..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence            4689999999999999999999985 5566 58888876

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.40  E-value=0.034  Score=53.83  Aligned_cols=94  Identities=22%  Similarity=0.249  Sum_probs=58.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh--------------------HHHHHHhhhhhhhcc-CC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKA-NG  218 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~-~~  218 (342)
                      ..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-.                    ..+...+    .++. ..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~----~l~~inp   94 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKK----RLEEINS   94 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHH----HHHHHCC
Confidence            4699999999999999999999985 6677 88888875310                    0000000    0110 00


Q ss_pred             CCCccc----cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328          219 EQPVTW----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       219 ~~~~~~----~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~  260 (342)
                      ......    ....+++++++++|+|+.++. +.+++.++++...+
T Consensus        95 ~v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~  139 (339)
T PRK07688         95 DVRVEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK  139 (339)
T ss_pred             CcEEEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            000000    012345678999999998876 66788777765544

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.39  E-value=0.46  Score=50.66  Aligned_cols=166  Identities=20%  Similarity=0.266  Sum_probs=109.5

Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      +..|+|.|+.-   +.+|=.+++-+++.+|-.                     |+.+...++.|.|.|.-|-.+|+.| .
T Consensus       151 ~~~ip~f~DD~---~GTa~v~lA~l~na~~~~---------------------~~~~~~~~iv~~GaGaag~~~a~~l-~  205 (752)
T PRK07232        151 RMDIPVFHDDQ---HGTAIISAAALLNALELV---------------------GKKIEDVKIVVSGAGAAAIACLNLL-V  205 (752)
T ss_pred             hcCCCeecccc---chHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECccHHHHHHHHHH-H
Confidence            34689988743   234556777777776532                     4578899999999999999999997 5


Q ss_pred             cCCc---EEEEEcCChh---hH---HHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh
Q 019328          187 GFKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       187 a~g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~  257 (342)
                      ..|.   +++.+|++--   .+   ...+...|   .+.        ....+|.|+++.+|+++=. .    +.+.|.++
T Consensus       206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~---a~~--------~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~  269 (752)
T PRK07232        206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAY---AVD--------TDARTLAEAIEGADVFLGL-S----AAGVLTPE  269 (752)
T ss_pred             HcCCCcccEEEEcCCCeecCCCcccccHHHHHH---hcc--------CCCCCHHHHHcCCCEEEEc-C----CCCCCCHH
Confidence            6788   7999986621   01   11111111   111        1235899999999987654 2    25899999


Q ss_pred             HHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCC
Q 019328          258 RLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       258 ~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~  323 (342)
                      .++.|.+.+++.=.|.-..- ..+..+++ ..|.|.+-|-   ...|      -+..|+++-|-++-
T Consensus       270 ~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~p------nQ~NN~~~FPgi~~  326 (752)
T PRK07232        270 MVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATGR---SDYP------NQVNNVLCFPYIFR  326 (752)
T ss_pred             HHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEECC---cCCC------CcccceeecchhhH
Confidence            99999999999999887752 22222222 2234555551   1112      35678888887763

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.39  E-value=0.12  Score=49.95  Aligned_cols=113  Identities=13%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|++|+++|= .++.++++..+ ..||++|..+.|..-...+...+......+.   .+.......++++.++++|+|
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~---~g~~~~~~~d~~eav~~aDvv  226 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEV---SGGSVLVTDDVDEAVKDADFV  226 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHh---cCCeEEEEcCHHHHhCCCCEE
Confidence            588999999997 67788888876 5899999999876311111111100000000   111233457999999999999


Q ss_pred             EEcC-----CCCc--cc-------ccccCHhHHccCCCCcEEEecC---CCccCC
Q 019328          241 SLHP-----VLDK--TT-------YHLINKERLATMKKEAILVNCS---RGPVID  278 (342)
Q Consensus       241 ~l~l-----plt~--~t-------~~li~~~~l~~mk~gailIN~s---RG~~vd  278 (342)
                      ..-.     ....  +.       .-.++++.++.+|++++|.-+.   ||.=|+
T Consensus       227 y~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis  281 (338)
T PRK02255        227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVT  281 (338)
T ss_pred             EEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceec
Confidence            9833     2100  01       1346888888999998887663   554333

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.35  E-value=0.025  Score=56.41  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=48.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~l~l  244 (342)
                      +++.|+|+|.+|+.+|+.| ...|.+|.++|+++.... ......+...-. +    .......++++ +.++|.|++++
T Consensus         1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~~-~~~~~~~~~~~~-g----d~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERLR-RLQDRLDVRTVV-G----NGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHHH-HHHhhcCEEEEE-e----CCCCHHHHHHcCCCcCCEEEEec
Confidence            4799999999999999997 678999999999876422 111100000000 0    00112345555 78899999999


Q ss_pred             CCCc
Q 019328          245 VLDK  248 (342)
Q Consensus       245 plt~  248 (342)
                      +...
T Consensus        74 ~~~~   77 (453)
T PRK09496         74 DSDE   77 (453)
T ss_pred             CChH
Confidence            8543

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.34  E-value=0.065  Score=51.11  Aligned_cols=98  Identities=19%  Similarity=0.267  Sum_probs=56.6

Q ss_pred             EEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCC--CCccccccCCHHHHhhcCCEEEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      +|+|||.|.+|..+|..|+ ..|  .+|..+|++.........+ .    .....  .+.. ....+. +.++.||+|++
T Consensus         2 kI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~d-l----~~~~~~~~~~~-i~~~d~-~~l~~aDiVii   73 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMD-L----AHGTPFVKPVR-IYAGDY-ADCKGADVVVI   73 (308)
T ss_pred             EEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHH-H----HccccccCCeE-EeeCCH-HHhCCCCEEEE
Confidence            7999999999999999874 556  5899999986432111111 0    00000  0001 112344 45799999999


Q ss_pred             cCCCCcc---ccc--------ccC--HhHHccCCCCcEEEecC
Q 019328          243 HPVLDKT---TYH--------LIN--KERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~lplt~~---t~~--------li~--~~~l~~mk~gailIN~s  272 (342)
                      +.+....   ++-        ++.  .+.+....+.+++++++
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9885322   111        110  12333445778888874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.34  E-value=0.093  Score=53.10  Aligned_cols=115  Identities=16%  Similarity=0.137  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEcc----------ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhh----hhccCC------CCC
Q 019328          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP  221 (342)
Q Consensus       162 ~l~gktvGIiG~----------G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~  221 (342)
                      .+.|++|+|+|+          ..-...+++.| ...|.+|.+|||........  ..++.    +.....      ...
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence            589999999998          45778899998 58899999999985432110  00100    000000      000


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHh-HHccCCCCcEEEecCCCccCCHHHHH
Q 019328          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       222 ~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~-~l~~mk~gailIN~sRG~~vd~~aL~  283 (342)
                      -......++++.++.||+|+++.+- ++-+. ++-+ ..+.|++..+++|. |+ ++|.+.+-
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            0012234667899999999999884 33444 3433 35568766688884 54 34665553

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.31  E-value=0.067  Score=51.94  Aligned_cols=101  Identities=16%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcC-CcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+|+|+|. |.+|+.+++.|. .. +.++.+ ++++.... ....+.+.. +.  ....... ...+.++++.++|+|++
T Consensus         1 ~kVaIiGATG~vG~ellr~L~-~hP~~el~~l~~s~~sag-k~~~~~~~~-l~--~~~~~~~-~~~~~~~~~~~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLL-NHPEVEITYLVSSRESAG-KPVSEVHPH-LR--GLVDLNL-EPIDEEEIAEDADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-cCCCceEEEEeccchhcC-CChHHhCcc-cc--ccCCcee-ecCCHHHhhcCCCEEEE
Confidence            47999998 999999999984 55 677773 45443210 000000100 00  0001111 11255667678999999


Q ss_pred             cCCCCcccccccCHhHHccC-CCCcEEEecCCCccCC
Q 019328          243 HPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVID  278 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~m-k~gailIN~sRG~~vd  278 (342)
                      |+|...      ..+....+ +.|..+|+.|-.-=.+
T Consensus        75 alP~~~------s~~~~~~~~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        75 ALPHGV------SAELAPELLAAGVKVIDLSADFRLK  105 (346)
T ss_pred             CCCchH------HHHHHHHHHhCCCEEEeCChhhhcC
Confidence            999432      23333332 5688899988443333

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.24  E-value=0.1  Score=49.58  Aligned_cols=96  Identities=15%  Similarity=0.177  Sum_probs=57.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cCC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~sD  238 (342)
                      ..++||||.|+||+..+..+.+.-++++. .+|++++.....+...++          .. ..+.+.+++++     +.|
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~G----------i~-~~~~~ie~LL~~~~~~dID   72 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLG----------VA-TSAEGIDGLLAMPEFDDID   72 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcC----------CC-cccCCHHHHHhCcCCCCCC
Confidence            35899999999999977665444456655 567765432112111111          11 12367888885     578


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecC---CCcc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS---RGPV  276 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~s---RG~~  276 (342)
                      +|+.+.|.  ....   +-.....+.|..+|+-+   +|++
T Consensus        73 iVf~AT~a--~~H~---e~a~~a~eaGk~VID~sPA~~~Pl  108 (302)
T PRK08300         73 IVFDATSA--GAHV---RHAAKLREAGIRAIDLTPAAIGPY  108 (302)
T ss_pred             EEEECCCH--HHHH---HHHHHHHHcCCeEEECCccccCCc
Confidence            89999883  2221   11223346788888765   4554

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.24  E-value=0.24  Score=46.70  Aligned_cols=118  Identities=18%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+..|+++.|+|.|..+++++..| ...|+ +|++++|+.++ .++..+.++..    .. ........+++.. .++|+
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~~~~----~~-~~~~~~~~~~~~~-~~~dl  193 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLFGEL----GA-AVEAAALADLEGL-EEADL  193 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhhc----cc-ccccccccccccc-cccCE
Confidence            356899999999999999999998 57885 79999998764 23332222210    00 0001111222222 16999


Q ss_pred             EEEcCCCCccccc---ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          240 ISLHPVLDKTTYH---LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       240 V~l~lplt~~t~~---li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      |+.+.|..-.-..   +++   ...++++.++.++-=.+. ++.=|.+|=+.|.
T Consensus       194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G~  243 (283)
T COG0169         194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQGA  243 (283)
T ss_pred             EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcCC
Confidence            9999997654431   333   566788889988855443 5555555555553

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.22  E-value=0.061  Score=54.67  Aligned_cols=37  Identities=32%  Similarity=0.308  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      ++.+++|+|+|+|..|.++|+.| +..|.+|.++|...
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~   40 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTRE   40 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCC
Confidence            36789999999999999999997 68999999999764

>PLN02527 aspartate carbamoyltransferase

Probab=95.19  E-value=0.18  Score=48.14  Aligned_cols=105  Identities=18%  Similarity=0.307  Sum_probs=64.6

Q ss_pred             ccCCCEEEEEccC---hHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~G---~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|+||+++|-+   +..++.+..+ ..| |++|....|..-...+.+.+.    ++.   .+.......++++.++.|
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~---~g~~~~~~~d~~~a~~~a  219 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTS---KGVEWEESSDLMEVASKC  219 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHH---cCCEEEEEcCHHHHhCCC
Confidence            4789999999965   6889999886 466 999998887531111111111    111   112233457899999999


Q ss_pred             CEEEEcCCCCc------c-c-----ccccCHhHHccCCCCcEEEecC-CC
Q 019328          238 DVISLHPVLDK------T-T-----YHLINKERLATMKKEAILVNCS-RG  274 (342)
Q Consensus       238 DiV~l~lplt~------~-t-----~~li~~~~l~~mk~gailIN~s-RG  274 (342)
                      |+|....-..+      + -     .-.++++.++..|++++|.-+. ||
T Consensus       220 Dvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg  269 (306)
T PLN02527        220 DVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRL  269 (306)
T ss_pred             CEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCc
Confidence            99988532101      0 0     1334667777777777776542 44

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.18  E-value=0.065  Score=51.03  Aligned_cols=102  Identities=23%  Similarity=0.319  Sum_probs=59.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||.|.+|+.+|..|+ ..|  -+|..+|++.... +.............. .... ....+.+ .++.||+|+++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~-~~~~-i~~~~~~-~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLV-NQGIADELVLIDINEEKA-EGEALDLEDALAFLP-SPVK-IKAGDYS-DCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccC-CCeE-EEcCCHH-HhCCCCEEEEc
Confidence            47999999999999999874 556  4899999986542 221111100000000 0001 1123444 47899999999


Q ss_pred             CCCCc---ccc-ccc--C-------HhHHccCCCCcEEEecC
Q 019328          244 PVLDK---TTY-HLI--N-------KERLATMKKEAILVNCS  272 (342)
Q Consensus       244 lplt~---~t~-~li--~-------~~~l~~mk~gailIN~s  272 (342)
                      .....   ++| .++  |       .+.+....|.+++|+++
T Consensus        76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            76421   122 111  1       12345567889999987

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.13  E-value=0.14  Score=49.63  Aligned_cols=119  Identities=20%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             CEEEEEccChHHHHHHHHHHh---------cCCcEEEE-EcCChh---------hHHHHHHhhhhhhhccCCCCC-c-cc
Q 019328          166 QTVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQA---------TRLEKFVTAYGQFLKANGEQP-V-TW  224 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~---------a~g~~V~~-~d~~~~---------~~~~~~~~~~~~~~~~~~~~~-~-~~  224 (342)
                      .+|||+|+|.||+.+++.+.+         +.+++|.+ +|++..         .+...+...       .+... . ..
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~-------~~~~~~~~~~   75 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEE-------TGKLADYPEG   75 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhc-------cCCcccCccc
Confidence            379999999999999998742         23577654 454311         111111110       01000 0 00


Q ss_pred             cccCCHHHHh--hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCc
Q 019328          225 KRASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (342)
Q Consensus       225 ~~~~~l~ell--~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i  291 (342)
                      ....++++++  ...|+|+.++|....+...--.-..+.++.|.-+|-..-+.+. ..+.|.++.++..+
T Consensus        76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            1124788888  4679999999965443222112235556677666654444432 45677777666544

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.12  E-value=0.1  Score=50.23  Aligned_cols=128  Identities=16%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDiV~l  242 (342)
                      ..+|+||++.||+.++-.+ ..-|..|.+|+|+.++.. ++...      .+.  ........|+++++   +.--.|++
T Consensus         7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD-~flan------eak--~~~i~ga~S~ed~v~klk~PR~iil   76 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVD-EFLAN------EAK--GTKIIGAYSLEDFVSKLKKPRVIIL   76 (487)
T ss_pred             cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHH-HHHHH------hhc--CCcccCCCCHHHHHHhcCCCcEEEE
Confidence            3589999999999999987 478999999999987532 22221      111  12223356888875   44566666


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~  304 (342)
                      .+-...-.-. +-++....|.+|-++|+-+...--|+..-.+.|.+..|-..+.-|.-.|--
T Consensus        77 lvkAG~pVD~-~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEG  137 (487)
T KOG2653|consen   77 LVKAGAPVDQ-FIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEG  137 (487)
T ss_pred             EeeCCCcHHH-HHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccc
Confidence            6654433333 335677889999999999999999999999999999988888888887764

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.06  E-value=0.057  Score=49.83  Aligned_cols=106  Identities=20%  Similarity=0.238  Sum_probs=61.5

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhccCC-CCCccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANG-EQPVTW  224 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~-~~~~~~  224 (342)
                      ..|.+++|+|||+|.+|..+|+.|+ ..|. ++..+|...-..  . ..+           .+.....++.-. ......
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~  106 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET  106 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            4799999999999999999999985 5665 677777552110  0 000           000000000000 000000


Q ss_pred             -c-c--cCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          225 -K-R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       225 -~-~--~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                       . .  ..+++++++++|+|+.|+- +.+++..+++...+..+   -+|..
T Consensus       107 ~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~i---p~v~~  153 (245)
T PRK05690        107 INARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKK---PLVSG  153 (245)
T ss_pred             EeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCC---EEEEe
Confidence             0 0  1235678899999999885 66788878776655433   35554

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.01  E-value=0.12  Score=49.65  Aligned_cols=96  Identities=16%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh---cCCE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV  239 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sDi  239 (342)
                      .|++|.|.|.|.+|...++.+ +..|+ +|++.++++++..  +..+++.       .........+++++..   ..|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~~--~a~~lGa-------~~vi~~~~~~~~~~~~~~g~~D~  238 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSLS--LAREMGA-------DKLVNPQNDDLDHYKAEKGYFDV  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHHH--HHHHcCC-------cEEecCCcccHHHHhccCCCCCE
Confidence            589999999999999999985 89998 6888888765432  2222221       1000011123444432   2689


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+-+.... ++    -...++.++++..++.++..
T Consensus       239 vid~~G~~-~~----~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        239 SFEVSGHP-SS----INTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             EEECCCCH-HH----HHHHHHHhhcCCEEEEEccC
Confidence            88887632 11    24567889999999998753

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.98  E-value=0.15  Score=52.39  Aligned_cols=40  Identities=25%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .++.+|++.|+|.|.+|++++..| ...|++|+.++|+.++
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~  414 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER  414 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            357899999999999999999998 5788999999998653

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.96  E-value=0.061  Score=52.94  Aligned_cols=109  Identities=14%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-HhhcCCEE
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI  240 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~sDiV  240 (342)
                      -..++|+|+|. |.+|+++.+.|...=++++..+.+..... ....+.+ ..+.. +  .  .....+++. .++++|+|
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~-~~l~~-~--~--~~~~~~~~~~~~~~~DvV  108 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVF-PHLIT-Q--D--LPNLVAVKDADFSDVDAV  108 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhC-ccccC-c--c--ccceecCCHHHhcCCCEE
Confidence            35569999998 99999999997533367887776543211 0000000 00000 0  0  001112222 24889999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHH
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~  284 (342)
                      ++++|..      ...+....|+.|..+|+.|..-..+.++.++
T Consensus       109 f~Alp~~------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~  146 (381)
T PLN02968        109 FCCLPHG------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE  146 (381)
T ss_pred             EEcCCHH------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence            9999943      3344555567789999998766666655444

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=94.88  E-value=0.056  Score=42.28  Aligned_cols=66  Identities=20%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~  241 (342)
                      ..++.|+|.|++|++++....+..|++ +.++|.+++.-        +.       .-.+...+.+++++.+.  .|+-+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~--------G~-------~i~gipV~~~~~~l~~~~~i~iai   67 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI--------GK-------EIGGIPVYGSMDELEEFIEIDIAI   67 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT--------TS-------EETTEEEESSHHHHHHHCTTSEEE
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc--------Cc-------EECCEEeeccHHHhhhhhCCCEEE
Confidence            357999999999999985433444544 34566655431        10       00112234578888777  99999


Q ss_pred             EcCC
Q 019328          242 LHPV  245 (342)
Q Consensus       242 l~lp  245 (342)
                      +++|
T Consensus        68 i~VP   71 (96)
T PF02629_consen   68 ITVP   71 (96)
T ss_dssp             EES-
T ss_pred             EEcC
Confidence            9999

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.88  E-value=0.087  Score=53.00  Aligned_cols=116  Identities=18%  Similarity=0.239  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..+++++.|+|+|..|.+ +|+.| +..|.+|.++|....+....+        +..+   .......+ .+.+..+|+|
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~l--------~~~g---i~~~~~~~-~~~~~~~d~v   70 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQRL--------LELG---AIIFIGHD-AENIKDADVV   70 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHHH--------HHCC---CEEeCCCC-HHHCCCCCEE
Confidence            456789999999999999 79997 689999999998754322211        1111   11111112 3455689998


Q ss_pred             EEc--CCCC-cccc-------cccCHhHH-cc-CCC-CcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          241 SLH--PVLD-KTTY-------HLINKERL-AT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       241 ~l~--lplt-~~t~-------~li~~~~l-~~-mk~-gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      +..  +|.+ |..+       .++++-.+ .. +++ ..+-|-=+.|..=-..-+.+.|+...
T Consensus        71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            877  3422 2211       23444333 33 332 34555556788877777778887643

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.85  E-value=0.1  Score=52.81  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+.+++|.|+|+|..|+++|+.| ...|++|.++|+..... .+..+..          +..........+.+..+|+|+
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l~~~----------gi~~~~~~~~~~~~~~~d~vV   79 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLIEVT----------GVADISTAEASDQLDSFSLVV   79 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHHHhc----------CcEEEeCCCchhHhcCCCEEE
Confidence            57899999999999999999997 68999999999765432 1111111          111111112234456789988


Q ss_pred             Ec--CCC-Cccc-------ccccCHhHHcc-------C-CC-CcEEEecCCCccCCHHHHHHHHHcC
Q 019328          242 LH--PVL-DKTT-------YHLINKERLAT-------M-KK-EAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       242 l~--lpl-t~~t-------~~li~~~~l~~-------m-k~-gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ..  +|. +|+.       ..++++-.+..       + ++ ..+-|-=+-|..--..-|...|+..
T Consensus        80 ~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         80 TSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             eCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            76  332 2221       12233333321       1 12 2344544668877777777888763

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=94.84  E-value=0.46  Score=46.85  Aligned_cols=172  Identities=20%  Similarity=0.157  Sum_probs=104.0

Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      +..|+|.|+.--   -+|=.+++-+|+.+|-                     .|+.|+..+|.+.|.|.-|-.+++.+ .
T Consensus       165 ~~~IPvFhDDqq---GTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~  219 (432)
T COG0281         165 RMNIPVFHDDQQ---GTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-V  219 (432)
T ss_pred             cCCCCccccccc---HHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence            445777776543   4466677777766643                     35789999999999999999999997 6


Q ss_pred             cCCc---EEEEEcCChh---hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328          187 GFKM---NLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       187 a~g~---~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~  260 (342)
                      +.|+   +|+.+|+.--   .+.+-....+......+..    .. ... ++.+..+|+++-+-     +.+.|.++.++
T Consensus       220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~----~~-~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~  288 (432)
T COG0281         220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDT----GE-RTL-DLALAGADVLIGVS-----GVGAFTEEMVK  288 (432)
T ss_pred             HhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhh----cc-ccc-cccccCCCEEEEcC-----CCCCcCHHHHH
Confidence            8888   5999997621   1100000000000000000    00 111 45788999887662     23899999999


Q ss_pred             cCCCCcEEEecCCCcc-CCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCC
Q 019328          261 TMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       261 ~mk~gailIN~sRG~~-vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~  323 (342)
                      .|.+.+++.=.|.-.. +..++..++=+...|.+-|      -|.  .|- +..|+++-|.|+-
T Consensus       289 ~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG------rsd--~Pn-QvNNvL~FPgIfr  343 (432)
T COG0281         289 EMAKHPIIFALANPTPEITPEDAKEWGDGAAIVATG------RSD--YPN-QVNNVLIFPGIFR  343 (432)
T ss_pred             HhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC------CCC--Ccc-cccceeEcchhhh
Confidence            9999999998887653 2222222221111333332      221  111 7889999999974

>PRK12861 malic enzyme; Reviewed

Probab=94.83  E-value=0.77  Score=49.03  Aligned_cols=163  Identities=17%  Similarity=0.173  Sum_probs=106.4

Q ss_pred             CceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcC
Q 019328          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (342)
Q Consensus       109 gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~  188 (342)
                      .|+|.|+.-   +.+|=.+++-+++.+|-.                     |+.+...+|.|.|.|.-|-.+|+.| ...
T Consensus       157 ~ipvf~DD~---qGTa~v~lA~llnal~~~---------------------gk~l~d~~iv~~GAGaAg~~ia~~l-~~~  211 (764)
T PRK12861        157 KIPVFHDDQ---HGTAITVSAAFINGLKVV---------------------GKSIKEVKVVTSGAGAAALACLDLL-VDL  211 (764)
T ss_pred             CCCeecccc---chHHHHHHHHHHHHHHHh---------------------CCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence            699988743   234556777777776532                     4578889999999999999999997 577


Q ss_pred             Cc---EEEEEcCChh---hH---HHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHH
Q 019328          189 KM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (342)
Q Consensus       189 g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l  259 (342)
                      |.   +++.+|+.--   .+   ...+...|   .+.        ....+|.|+++.+|+++=. .    +.+.|.++.+
T Consensus       212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~---a~~--------~~~~~L~eai~~advliG~-S----~~g~ft~e~v  275 (764)
T PRK12861        212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERF---AQE--------TDARTLAEVIGGADVFLGL-S----AGGVLKAEML  275 (764)
T ss_pred             CCChhhEEEEcCCCeeeCCCcccCCHHHHHH---Hhh--------cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHH
Confidence            88   7999995420   00   01111111   111        1125899999999977543 2    2589999999


Q ss_pred             ccCCCCcEEEecCCCccC-CHHHHHHHHHcCC-ccEEEeecCCCCCCCCCCccCCCceEEcCCCCC
Q 019328          260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       260 ~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~  323 (342)
                      +.|.+.+++.=.|.-..- ..+..++  ..|+ |.+-|-      .   ..--+..|+++-|-++-
T Consensus       276 ~~Ma~~PIIFaLsNPtpE~~pe~a~~--~~g~aivaTGr------s---~~pnQ~NN~l~FPgi~~  330 (764)
T PRK12861        276 KAMAARPLILALANPTPEIFPELAHA--TRDDVVIATGR------S---DYPNQVNNVLCFPYIFR  330 (764)
T ss_pred             HHhccCCEEEECCCCCccCCHHHHHh--cCCCEEEEeCC------c---CCCCccceeeecchhhH
Confidence            999999999999887642 2222222  2244 333311      1   11235679999998763

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.80  E-value=0.13  Score=50.36  Aligned_cols=89  Identities=24%  Similarity=0.328  Sum_probs=59.3

Q ss_pred             cCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH
Q 019328          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (342)
Q Consensus       163 l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (342)
                      |.||||||+|+-          .=...++++| +..|++|.+|||-.......            . .+ ......++++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~------------~-~~-~~~~~~~~~~  372 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR------------N-FP-DVELESDAEE  372 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh------------c-CC-CceEeCCHHH
Confidence            899999999985          3456788887 68999999999976432110            0 00 1234679999


Q ss_pred             HhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEe
Q 019328          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (342)
Q Consensus       233 ll~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN  270 (342)
                      .++.||+++++.. .++-+.+ +-+.+ .|| +..+++
T Consensus       373 ~~~~aDaivi~te-w~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         373 ALKGADAIVINTE-WDEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHhhCCEEEEecc-HHHHhcc-Chhhh-hcc-CCEEEe
Confidence            9999999999865 2333332 33333 555 344443

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=94.79  E-value=0.22  Score=47.53  Aligned_cols=93  Identities=22%  Similarity=0.313  Sum_probs=62.0

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+.|++|++||=   +++.++++..+ ..||+++....|..-..              ....  ......++++.++.+|
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~--------------~~~~--~~~~~~d~~ea~~~aD  215 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP--------------EGMP--EYGVHTDLDEVIEDAD  215 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc--------------cccc--ceEEECCHHHHhCCCC
Confidence            478999999988   58999999986 68999999988743110              0000  1134579999999999


Q ss_pred             EEEEcCCCCcc--------c-----ccccCHhHHccCCCCcEEEec
Q 019328          239 VISLHPVLDKT--------T-----YHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       239 iV~l~lplt~~--------t-----~~li~~~~l~~mk~gailIN~  271 (342)
                      +|....-..+.        -     .-.++++.++.+|++++|.-+
T Consensus       216 vvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc  261 (305)
T PRK00856        216 VVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHP  261 (305)
T ss_pred             EEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECC
Confidence            99875321111        0     123466666667777666544

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.79  E-value=0.32  Score=43.94  Aligned_cols=99  Identities=19%  Similarity=0.143  Sum_probs=60.8

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-----hhcC
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LREA  237 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~s  237 (342)
                      ..|.+|.|.|.|.+|+.+++.+ +..|.+|++.+++.....  +....+       ..........+..+.     -...
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~~--~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKLE--LAKELG-------ADHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHHH--HHHHhC-------CceeccCCcCCHHHHHHHhcCCCC
Confidence            3578999999999999999985 799999999998764321  111111       000000001112111     2457


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      |+++.+++...     .-...++.|+++..+++++....
T Consensus       203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~~  236 (271)
T cd05188         203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTSG  236 (271)
T ss_pred             CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCCC
Confidence            88888776321     23446778888888888876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.78  E-value=0.22  Score=49.74  Aligned_cols=118  Identities=20%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc-CCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-sDiV  240 (342)
                      ++.||++.|+|.|.+|.++|+.| ...|++|.++|+........ .+    .+...+   ..........+++.. .|+|
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g---~~~~~~~~~~~~~~~~~d~v   72 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEG---IKVICGSHPLELLDEDFDLM   72 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcC---CEEEeCCCCHHHhcCcCCEE
Confidence            46799999999999999999998 68999999999764321110 00    011111   111111122344454 8988


Q ss_pred             EEcC--CCC-cc-------cccccCHhHH-ccC-CCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          241 SLHP--VLD-KT-------TYHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       241 ~l~l--plt-~~-------t~~li~~~~l-~~m-k~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      +..-  |.+ |.       ...++.+..+ ..+ +...+-|--+.|..--..-|...|+.
T Consensus        73 V~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~  132 (447)
T PRK02472         73 VKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA  132 (447)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8764  322 11       1122333323 333 33445555567888777777777875

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.76  E-value=0.13  Score=43.05  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=26.8

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~  198 (342)
                      +|.|+|+|.+|.++|+.|+ ..|. ++..+|+.
T Consensus         1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence            5899999999999999984 6777 78888866

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.75  E-value=0.28  Score=46.24  Aligned_cols=119  Identities=19%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.||++.|+|.|..|++++-.|+ ..|+ +|.+++|+..+. ++..+.+..   ..+..........++++.+..+|+|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~div  198 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEE
Confidence            456899999999999999999874 6787 789999987542 222221110   0000000000011234566789999


Q ss_pred             EEcCCCCcccc--cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTY--HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~--~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.+.|..-...  -.++.   ..++++.++.++-=.+ ..+.-|.+|-+.|
T Consensus       199 INaTp~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  245 (283)
T PRK14027        199 VNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_pred             EEcCCCCCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCC
Confidence            99998543111  01222   2345555666554332 3344444444444

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.72  E-value=0.1  Score=52.76  Aligned_cols=120  Identities=18%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +..+.++++.|+|.|.+|.++|+.| ...|.+|.++|+..........+    .++..+   +....-...+ ....+|+
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~----~l~~~g---v~~~~~~~~~-~~~~~D~   81 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALAA----ILEALG---ATVRLGPGPT-LPEDTDL   81 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHH----HHHHcC---CEEEECCCcc-ccCCCCE
Confidence            3467899999999999999999997 68999999999764322111111    111111   1111001111 3456899


Q ss_pred             EEEcCCCCcccc----------cccCH-hHH-ccCCC----CcEEEecCCCccCCHHHHHHHHHc
Q 019328          240 ISLHPVLDKTTY----------HLINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       240 V~l~lplt~~t~----------~li~~-~~l-~~mk~----gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      |+++.-..+.+.          .++++ +++ ..+.+    ..+-|-=+.|..--..-|...|+.
T Consensus        82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            988853323222          12333 222 33422    235555567887777777777765

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.71  E-value=0.056  Score=54.08  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..|++|.|+|+|.-|.++|+.| ...|++|.++|.++.+.......     .   .........-....+.+..+|+|+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~-----~---~~~~i~~~~g~~~~~~~~~~d~vV~   75 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP-----L---LLEGIEVELGSHDDEDLAEFDLVVK   75 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh-----h---hccCceeecCccchhccccCCEEEE
Confidence            4499999999999999999998 68999999999766541000000     0   0001111111112266788999999


Q ss_pred             c--CCCCcc--------cccccCH-hHHccC-CCCcEE-EecCCCccCCHHHHHHHHHc--------CCccEEEeecCCC
Q 019328          243 H--PVLDKT--------TYHLINK-ERLATM-KKEAIL-VNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFED  301 (342)
Q Consensus       243 ~--lplt~~--------t~~li~~-~~l~~m-k~gail-IN~sRG~~vd~~aL~~aL~~--------g~i~gaalDV~~~  301 (342)
                      .  +|.+..        -..++++ +.|-+. ++..++ |--+-|..=-+.-+...|++        |.|...++|+.++
T Consensus        76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~  155 (448)
T COG0771          76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ  155 (448)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence            8  443322        0112322 333332 233344 44445776555555555553        5678888999988


Q ss_pred             CCCC
Q 019328          302 EPYM  305 (342)
Q Consensus       302 EP~~  305 (342)
                      ++.+
T Consensus       156 ~~~~  159 (448)
T COG0771         156 AEPA  159 (448)
T ss_pred             cCCC
Confidence            5543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.69  E-value=0.081  Score=46.19  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh---h--------------HHHHHHhhhhhhhccCCCCCccc----
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA---T--------------RLEKFVTAYGQFLKANGEQPVTW----  224 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~----  224 (342)
                      +|+|+|.|.+|..+|+.|+ ..|. ++..+|...-   .              +.+.........   ........    
T Consensus         1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l---np~v~i~~~~~~   76 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI---NPFVKIEAINIK   76 (174)
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH---CCCCEEEEEEee
Confidence            5899999999999999985 5677 5888887641   0              000000000000   00000000    


Q ss_pred             cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       225 ~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      ....+++++++++|+|+.|.. +.+++..++....+.
T Consensus        77 ~~~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~  112 (174)
T cd01487          77 IDENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN  112 (174)
T ss_pred             cChhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence            011245678899999999844 677887676666554

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.64  E-value=0.088  Score=52.90  Aligned_cols=112  Identities=21%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++.|++|.|+|+|.+|.++|+.| ...|.+|.++|....... ..        ...+..   .... .. +-+..+|+|+
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~l--------~~~g~~---~~~~-~~-~~~~~~d~vv   70 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-KA--------AAAGIT---TADL-RT-ADWSGFAALV   70 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-HH--------HhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence            47799999999999999999997 689999999997644221 11        111111   1111 11 2346799887


Q ss_pred             Ec--CCCC-c----c---ccc----ccCH-hHHcc-C-----CCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          242 LH--PVLD-K----T---TYH----LINK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~--lplt-~----~---t~~----li~~-~~l~~-m-----k~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      ..  +|.+ |    .   ++.    ++.+ +.+.+ +     +...+-|.=+.|..--..-|...|+.
T Consensus        71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~  138 (460)
T PRK01390         71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE  138 (460)
T ss_pred             ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence            64  3322 1    1   111    1332 22222 2     33455666678998888888888876

>PLN02342 ornithine carbamoyltransferase

Probab=94.63  E-value=0.74  Score=44.72  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=63.8

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|+||+++|= .++-++++..+ ..||++|....|..-...+...+.    .+..+.  .......++++.++.+|+|
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVv  263 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVV  263 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence            478999999997 35777777775 589999998887542111111111    011010  1223457999999999999


Q ss_pred             EEcCC----CCcc--------cccccCHhHHccCCCCcEEEec
Q 019328          241 SLHPV----LDKT--------TYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       241 ~l~lp----lt~~--------t~~li~~~~l~~mk~gailIN~  271 (342)
                      ..-.-    ..++        ..-.++++.++.+|++++|.-+
T Consensus       264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp  306 (348)
T PLN02342        264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC  306 (348)
T ss_pred             EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence            97631    1111        1134577778888888777655

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.62  E-value=0.065  Score=55.61  Aligned_cols=38  Identities=18%  Similarity=0.375  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ....|||||||-|..|+.+++.+ +.+|.+|+.+|+++.
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLED   56 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence            47899999999999999999985 789999999998764

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.60  E-value=0.09  Score=50.21  Aligned_cols=45  Identities=22%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAY  210 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~  210 (342)
                      .+|||=|||+||+.+++.+...- .|+|++.+-..++...++...|
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~Llky   47 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKY   47 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhh
Confidence            37999999999999999974334 4999988763333333333333

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.58  E-value=0.19  Score=50.09  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=51.9

Q ss_pred             ccccCCCEEEEEcc----------ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccC
Q 019328          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (342)
Q Consensus       160 g~~l~gktvGIiG~----------G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      +.++.|++|+|+|+          ..-...+++.| ...| ++|.+|||........    +         ..  .....
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~----~---------~~--~~~~~  378 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK----L---------DG--LVTLV  378 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh----c---------cC--ceeeC
Confidence            45789999999998          45678899998 5775 9999999985421000    0         00  01236


Q ss_pred             CHHHHhhcCCEEEEcCCC
Q 019328          229 SMDEVLREADVISLHPVL  246 (342)
Q Consensus       229 ~l~ell~~sDiV~l~lpl  246 (342)
                      ++++.++.||.|+++.+-
T Consensus       379 ~~~~~~~~ad~vvi~t~~  396 (415)
T PRK11064        379 SLDEALATADVLVMLVDH  396 (415)
T ss_pred             CHHHHHhCCCEEEECCCC
Confidence            889999999999999884

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.57  E-value=0.18  Score=50.32  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=59.0

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH----HhhcCC
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREAD  238 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~sD  238 (342)
                      +..+++.|+|+|.+|+.+++.| ...|.+|+++|++++.. +......      .+. ........+.+.    -+.++|
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~~-~~i~gd~~~~~~L~~~~~~~a~  299 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PNT-LVLHGDGTDQELLEEEGIDEAD  299 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CCC-eEEECCCCCHHHHHhcCCccCC
Confidence            4568999999999999999998 68899999999887642 1111110      000 000001122222    357899


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      .|+++.+...  .+++-....+.+.+..+++-+
T Consensus       300 ~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        300 AFIALTNDDE--ANILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             EEEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence            9998888543  344434444555555555544

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.57  E-value=0.093  Score=48.28  Aligned_cols=99  Identities=16%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHH---HH---Hhhhh--------hhhccCC-CCCccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE---KF---VTAYG--------QFLKANG-EQPVTW  224 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~---~~---~~~~~--------~~~~~~~-~~~~~~  224 (342)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..-....   .+   ....|        ..++.-. ......
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~   98 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP   98 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            4699999999999999999999985 5565 67777765321000   00   00000        0000000 000000


Q ss_pred             c--c--cCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       225 ~--~--~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .  .  ..+++++++++|+|+.+.. +.+++..+++...+.
T Consensus        99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~  138 (240)
T TIGR02355        99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA  138 (240)
T ss_pred             EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence            0  1  1235678899999998885 577888887766554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06153 hypothetical protein; Provisional

Probab=94.50  E-value=0.1  Score=51.21  Aligned_cols=107  Identities=16%  Similarity=0.155  Sum_probs=62.0

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh-----HH------HH------HHhhhhhhhccCCCCCcc
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-----RL------EK------FVTAYGQFLKANGEQPVT  223 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~-----~~------~~------~~~~~~~~~~~~~~~~~~  223 (342)
                      .|++++|+|||+|.+|..++..|+ ..|. ++..+|...-.     +.      +.      ..+.+...+..-. ..+.
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in-~~I~  250 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR-RGIV  250 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC-CeEE
Confidence            689999999999999999999986 5565 78888865110     00      00      0000000000000 0010


Q ss_pred             c--cc--cCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          224 W--KR--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       224 ~--~~--~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      .  ..  ..++ +.+..+|+|+.|+. +.++|.++++...+.   +.-+|++|=|-
T Consensus       251 ~~~~~I~~~n~-~~L~~~DiV~dcvD-n~~aR~~ln~~a~~~---gIP~Id~G~~l  301 (393)
T PRK06153        251 PHPEYIDEDNV-DELDGFTFVFVCVD-KGSSRKLIVDYLEAL---GIPFIDVGMGL  301 (393)
T ss_pred             EEeecCCHHHH-HHhcCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEeeecc
Confidence            0  01  1122 35688999999988 455688777766553   55577766554

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.41  E-value=0.2  Score=45.31  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+.||++-|.|. |.||+.+++.| ...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~   41 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA   41 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence            367899999996 99999999998 477999998887653

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.39  E-value=0.19  Score=47.49  Aligned_cols=90  Identities=14%  Similarity=0.232  Sum_probs=51.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      .++||||.|.||+..+..+.+.-++++. .+|++++.....+...++          .. ....+.+++++  +-|+|++
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~G----------i~-~~~~~~e~ll~~~dIDaV~i   70 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELG----------VK-TSAEGVDGLLANPDIDIVFD   70 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCC----------CC-EEECCHHHHhcCCCCCEEEE
Confidence            3799999999999887665433356655 467766432111111111          11 12357888885  5788999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      +.|..  ++.   +-....++.|..+|+-
T Consensus        71 aTp~~--~H~---e~a~~al~aGk~VIde   94 (285)
T TIGR03215        71 ATSAK--AHA---RHARLLAELGKIVIDL   94 (285)
T ss_pred             CCCcH--HHH---HHHHHHHHcCCEEEEC
Confidence            99833  222   1123334556555544

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=94.39  E-value=0.33  Score=46.92  Aligned_cols=106  Identities=15%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|+||++||=+  ++.++.+..+ ..||++|....|..-...+.+.+......+.   .+.......++++.++++|+
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~---~g~~~~~~~d~~ea~~~aDv  227 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAE---TGGKITITDDIDEGVKGSDV  227 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHH---cCCeEEEEcCHHHHhCCCCE
Confidence            4789999999975  7888988886 6899999998875311111111100000000   11123345799999999999


Q ss_pred             EEEcCCCC--c------c-----cccccCHhHHccCC-CCcEEEec
Q 019328          240 ISLHPVLD--K------T-----TYHLINKERLATMK-KEAILVNC  271 (342)
Q Consensus       240 V~l~lplt--~------~-----t~~li~~~~l~~mk-~gailIN~  271 (342)
                      |..-.-..  .      +     ..-.++++.++.+| |+++|.-+
T Consensus       228 vy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp  273 (332)
T PRK04284        228 IYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC  273 (332)
T ss_pred             EEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence            98853210  0      0     11235677777775 47776655

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.38  E-value=0.087  Score=54.39  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=56.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV~  241 (342)
                      -++-|+|+|++|+.+|+.| +..|.++++.|.+++..... .+ .       +. ..-.....+.+-+    ++++|.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~~~~-~~-~-------g~-~~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRVDEL-RE-R-------GI-RAVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHHHHH-HH-C-------CC-eEEEcCCCCHHHHHhcCccccCEEE
Confidence            5689999999999999998 68899999999987643221 11 1       11 1111111222222    47899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEE
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailI  269 (342)
                      ++++.+.++..++-.  ...+.|...+|
T Consensus       487 v~~~~~~~~~~iv~~--~~~~~~~~~ii  512 (558)
T PRK10669        487 LTIPNGYEAGEIVAS--AREKRPDIEII  512 (558)
T ss_pred             EEcCChHHHHHHHHH--HHHHCCCCeEE
Confidence            999976665544432  23334555555

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.38  E-value=0.1  Score=50.62  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=54.6

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-HhhcCCEEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~sDiV~l  242 (342)
                      ++|+|+|. |.+|+.+++.|...=++++.+ .++.....  ...+.+.      ...........++++ ...++|+|++
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~--~l~~~~~------~~~~~~~~~~~~~~~~~~~~vD~Vf~   74 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK--PLSDVHP------HLRGLVDLVLEPLDPEILAGADVVFL   74 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc--chHHhCc------ccccccCceeecCCHHHhcCCCEEEE
Confidence            68999996 999999999974323677654 45322110  0000000      000000001222332 4578999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~  279 (342)
                      |+|... ...+    ..+..+.|..+|+.|-.--.+.
T Consensus        75 alP~~~-~~~~----v~~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         75 ALPHGV-SMDL----APQLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             CCCcHH-HHHH----HHHHHhCCCEEEECCcccCCCC
Confidence            999432 1111    2222357899999985544443

>PLN02602 lactate dehydrogenase

Probab=94.32  E-value=0.22  Score=48.51  Aligned_cols=101  Identities=18%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCC-ccccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQP-VTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ++|+|||.|.+|..+|-.|+ +++.-++..+|...+.....-.| .    .+.. ... .......+.++ +++||+|++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D-L----~~~~~~~~~~~i~~~~dy~~-~~daDiVVi  111 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD-L----QHAAAFLPRTKILASTDYAV-TAGSDLCIV  111 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH-H----HhhhhcCCCCEEEeCCCHHH-hCCCCEEEE
Confidence            69999999999999998764 34445899999876432111111 1    1100 000 11111134444 899999999


Q ss_pred             cCCC--Cc-cccc-cc--C-------HhHHccCCCCcEEEecC
Q 019328          243 HPVL--DK-TTYH-LI--N-------KERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~lpl--t~-~t~~-li--~-------~~~l~~mk~gailIN~s  272 (342)
                      +.-.  .+ +||. ++  |       .+.+....|.+++|+++
T Consensus       112 tAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        112 TAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            8432  22 2442 22  1       12344457889999988

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.30  E-value=0.079  Score=52.47  Aligned_cols=42  Identities=19%  Similarity=0.413  Sum_probs=31.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHH
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFV  207 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~  207 (342)
                      .+|||.|||+||+.++|.+...++++|++ .||......-.+.
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayl  128 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYM  128 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHH
Confidence            59999999999999999853248899888 6665444333333

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=94.28  E-value=0.23  Score=51.78  Aligned_cols=62  Identities=23%  Similarity=0.351  Sum_probs=43.8

Q ss_pred             CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc-cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEc
Q 019328          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD  196 (342)
Q Consensus       119 ~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g-~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d  196 (342)
                      .....||.++-|=|-++|                |+.....+ ..|.+.+|.|||.|.+|..+|+.| .+.|. ++..+|
T Consensus       307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD  369 (664)
T TIGR01381       307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD  369 (664)
T ss_pred             CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence            456677777766655442                43222122 569999999999999999999998 47787 577777


Q ss_pred             C
Q 019328          197 L  197 (342)
Q Consensus       197 ~  197 (342)
                      .
T Consensus       370 ~  370 (664)
T TIGR01381       370 N  370 (664)
T ss_pred             C
Confidence            4

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=94.28  E-value=2.8  Score=40.10  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|+||++||- +++.++++..+ ..||++|....|..-.  +...+..-...+..+    ......++++.++++|+|
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~--~~~~~~~~~~~~~~g----~i~~~~d~~~av~~aDvv  222 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAK--ENIHAQTVERAKKKG----TLSWEMNLHKAVSHADYV  222 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCcc--HHHHHHHHHHHHhcC----CeEEEeCHHHHhCCCCEE
Confidence            478999999998 78999999986 5899999999885421  010000000001111    122346899999999999


Q ss_pred             EEcC
Q 019328          241 SLHP  244 (342)
Q Consensus       241 ~l~l  244 (342)
                      ..-.
T Consensus       223 y~d~  226 (311)
T PRK14804        223 YTDT  226 (311)
T ss_pred             Eeee
Confidence            8843

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=94.27  E-value=0.31  Score=47.19  Aligned_cols=76  Identities=12%  Similarity=0.224  Sum_probs=49.7

Q ss_pred             cccCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          161 NLLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       161 ~~l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ..+.|+||+++|=   +++..+.+..++.-+|++|....|..-...+.+.+.    ++..   +.......++++.++++
T Consensus       155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~ea~~~a  227 (338)
T PRK08192        155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENA---GHKITITDQLEGNLDKA  227 (338)
T ss_pred             CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHHccC
Confidence            3588999999998   578888888654355999998887532111111111    1111   11233457999999999


Q ss_pred             CEEEEc
Q 019328          238 DVISLH  243 (342)
Q Consensus       238 DiV~l~  243 (342)
                      |+|..-
T Consensus       228 Dvvyt~  233 (338)
T PRK08192        228 DILYLT  233 (338)
T ss_pred             CEEEEc
Confidence            999884

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.26  E-value=0.061  Score=52.08  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=30.0

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ||||||-|..|+.+++.+ +.+|.+|+++|+++.
T Consensus         1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~   33 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDAN   33 (352)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCC
Confidence            599999999999999985 789999999998764

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.25  E-value=0.07  Score=45.58  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAY  210 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~  210 (342)
                      +|||-|||+|||.++|.+...-.++|.+. |+.+..+...+..+|
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~Llky   46 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKY   46 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhc
Confidence            79999999999999999755667888766 455344444444333

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK05086 malate dehydrogenase; Provisional

Probab=94.22  E-value=0.19  Score=48.13  Aligned_cols=104  Identities=21%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~--a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++++|||. |.||+.+|..++.  ..+..+..+|+.+...  .....    +.+.. ..........++.+.++.||+|+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~--g~alD----l~~~~~~~~i~~~~~~d~~~~l~~~DiVI   74 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP--GVAVD----LSHIPTAVKIKGFSGEDPTPALEGADVVL   74 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc--ceehh----hhcCCCCceEEEeCCCCHHHHcCCCCEEE
Confidence            58999999 9999999977633  4556888999864321  10000    00100 00010001246677889999999


Q ss_pred             EcCCC--Ccc-ccc-cc------CHh---HHccCCCCcEEEecCCCc
Q 019328          242 LHPVL--DKT-TYH-LI------NKE---RLATMKKEAILVNCSRGP  275 (342)
Q Consensus       242 l~lpl--t~~-t~~-li------~~~---~l~~mk~gailIN~sRG~  275 (342)
                      ++.-.  .+. +|. ++      -.+   .++.-.+.+++++++---
T Consensus        75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            99653  221 121 11      122   333346788999986544

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.21  E-value=0.14  Score=48.45  Aligned_cols=109  Identities=23%  Similarity=0.269  Sum_probs=71.2

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh-hhhccCC-CCCccccccCC--------
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANG-EQPVTWKRASS--------  229 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~--------  229 (342)
                      +-...+.++-++|+|.+|-..+-. ++-.|+-|..+|-.+....+  .+..+ .++.... +..-++.+..|        
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keq--v~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~  235 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQ--VESLGAKFLAVEDEESAGGYAKEMSEEFIAKQA  235 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhh--hhhcccccccccccccCCCccccCCHHHHHHHH
Confidence            345778889999999999999887 46789999988876543111  11111 0111111 11111222222        


Q ss_pred             --HHHHhhcCCEEEEc--CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          230 --MDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       230 --l~ell~~sDiV~l~--lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                        +.+..++.|||+..  +|.-| .-.|+.++..+.||||+++|+.+
T Consensus       236 ~~~a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         236 ELVAEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHHHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence              45667899999765  67655 45688999999999999999974

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.20  E-value=0.11  Score=52.49  Aligned_cols=116  Identities=20%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      +.||+++|+|+|.-|.++|+.| ...|++|+++|.......... ..    ++....   ......+ ++.+.++|+|+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~-~~----l~~~~~---~~~~~~~-~~~~~~~d~vV~   75 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREV-GA----LADAAL---LVETEAS-AQRLAAFDVVVK   75 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHH-HH----HhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence            5689999999999999999997 689999999996543211110 00    111000   0011112 355678999988


Q ss_pred             c--CCCC-ccc-------ccccCHhHH--cc-CC-----CCcEEEecCCCccCCHHHHHHHHHc
Q 019328          243 H--PVLD-KTT-------YHLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~--lplt-~~t-------~~li~~~~l--~~-mk-----~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      .  +|.+ |.-       ..++++-.|  .. ++     +..+-|-=+.|..--..-+...|+.
T Consensus        76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            7  3422 211       124444333  33 32     2345555567887777777777765

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.18  E-value=0.17  Score=48.23  Aligned_cols=68  Identities=22%  Similarity=0.400  Sum_probs=45.7

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCC--cE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCE
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFK--MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g--~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDi  239 (342)
                      .++||||+|.|++. .+..+ +..+  +. |.++|+++.. .+.+.+.|+          .. ..+.+++++++.  -|+
T Consensus         4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~~----------~~-~~~~~~~~ll~~~~iD~   70 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEFG----------IA-KAYTDLEELLADPDIDA   70 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHcC----------CC-cccCCHHHHhcCCCCCE
Confidence            58999999977754 66665 4554  34 5566888764 333333332          11 246799999986  489


Q ss_pred             EEEcCCC
Q 019328          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~lpl  246 (342)
                      |+++.|.
T Consensus        71 V~Iatp~   77 (342)
T COG0673          71 VYIATPN   77 (342)
T ss_pred             EEEcCCC
Confidence            9999993

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.15  E-value=0.18  Score=48.57  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             EEEEEccChHHHHHHHHHHhcC----CcEEEEEcCChhhHHHHHHhhhh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYG  211 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~----g~~V~~~d~~~~~~~~~~~~~~~  211 (342)
                      +|||+|+|+||+.+.|.+. ..    +.+|...+.....+...+..+|+
T Consensus         1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd~~~~~~~ayll~yD   48 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNELADQASMAHLLRYD   48 (325)
T ss_pred             CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEecCCCHHHHHHHHhhC
Confidence            5899999999999999863 33    36777665433333333443443

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.13  E-value=0.16  Score=49.70  Aligned_cols=96  Identities=19%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh------------------HHHHHHhhhhhhhccCCCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|+|.+|..+++.|+ ..|. ++..+|...-.                  ..+.........   .....
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~---np~v~  112 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI---QPDIR  112 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH---CCCCe
Confidence            5699999999999999999999984 6776 78888866210                  000000000000   00000


Q ss_pred             cccc----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          222 VTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       222 ~~~~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      +...    ...+++++++++|+|+.|+. +.+++.++|+...+.
T Consensus       113 i~~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~  155 (370)
T PRK05600        113 VNALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT  155 (370)
T ss_pred             eEEeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence            1000    11346678999999988776 577888887765544

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.12  E-value=0.13  Score=53.65  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=60.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV  240 (342)
                      ..++-|+|+|++|+.+++.| ...|.++++.|.+++.....         +..+. ..-.-...+.+-+    +++||.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~~---------~~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAVNLM---------RKYGY-KVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHHHHH---------HhCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence            45799999999999999998 68899999999987642211         11111 1111112233222    5789999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +++.+..+++..++  ...+++.|...+|-.+|
T Consensus       469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence            99999766554432  34455666666654444

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.09  E-value=0.15  Score=48.34  Aligned_cols=31  Identities=26%  Similarity=0.538  Sum_probs=25.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~  198 (342)
                      +|.|+|.|.+|..+|+.|+ ..|. ++..+|..
T Consensus         1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCC
Confidence            5899999999999999984 6776 57777743

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.96  E-value=0.058  Score=47.43  Aligned_cols=67  Identities=15%  Similarity=0.290  Sum_probs=46.3

Q ss_pred             EEEEEccChHHHHHHHH-HHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~-l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      ++.|||.|++|++++.. ..+..||++. +||-.++.        .|.     ...+......+++++.++  +.|+.++
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~--------VG~-----~~~~v~V~~~d~le~~v~~~dv~iaiL  152 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDK--------VGT-----KIGDVPVYDLDDLEKFVKKNDVEIAIL  152 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHH--------hCc-----ccCCeeeechHHHHHHHHhcCccEEEE
Confidence            59999999999999964 2246789865 78877653        121     111233445567888887  6778999


Q ss_pred             cCCC
Q 019328          243 HPVL  246 (342)
Q Consensus       243 ~lpl  246 (342)
                      |+|.
T Consensus       153 tVPa  156 (211)
T COG2344         153 TVPA  156 (211)
T ss_pred             EccH
Confidence            9993

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.85  E-value=0.24  Score=47.00  Aligned_cols=100  Identities=19%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             EEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      |+|||.|.+|..+|-.++ ..|  .++..+|++.... ............. . .........+ .+.++.||+|+++..
T Consensus         1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~-~g~~~DL~~~~~~-~-~~~~i~~~~~-~~~l~~aDiVIitag   75 (300)
T cd00300           1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKA-KGDALDLSHASAF-L-ATGTIVRGGD-YADAADADIVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHH-HHHHHhHHHhccc-c-CCCeEEECCC-HHHhCCCCEEEEcCC
Confidence            589999999999999874 455  5899999976532 1111111110000 0 0011111233 457899999999965


Q ss_pred             CCc---cccccc---C-------HhHHccCCCCcEEEecC
Q 019328          246 LDK---TTYHLI---N-------KERLATMKKEAILVNCS  272 (342)
Q Consensus       246 lt~---~t~~li---~-------~~~l~~mk~gailIN~s  272 (342)
                      ...   .+|.-+   |       ...++...|.+++||++
T Consensus        76 ~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          76 APRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            321   122110   1       12344455899999998

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.82  E-value=0.31  Score=46.90  Aligned_cols=95  Identities=17%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC---hhhHHHHHHhhhhhhhccCCCCCccccccCCHHH--HhhcC
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREA  237 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~s  237 (342)
                      ..|.+|.|+|.|.||...++.+ +..|++|++.+++   +.+.  ++..+++..       ... ....++.+  .....
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~--~~~~~~Ga~-------~v~-~~~~~~~~~~~~~~~  239 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKA--DIVEELGAT-------YVN-SSKTPVAEVKLVGEF  239 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHH--HHHHHcCCE-------Eec-CCccchhhhhhcCCC
Confidence            3588999999999999999985 8999999999874   3221  122222211       000 00111111  22457


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+-++....     .-.+.++.|+++..++.++.
T Consensus       240 d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         240 DLIIEATGVPP-----LAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             CEEEECcCCHH-----HHHHHHHHccCCcEEEEEec
Confidence            99999876221     22457888999999888764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.78  E-value=0.15  Score=49.59  Aligned_cols=97  Identities=27%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh------------------HHHHHHhhhhhhhcc-CCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKA-NGEQ  220 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~-~~~~  220 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-.                  ..+...+    .++. ....
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~----~l~~~np~v   98 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESARE----AMLALNPDV   98 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHH----HHHHHCCCc
Confidence            4699999999999999999999985 6665 67777765310                  0000000    0000 0000


Q ss_pred             Ccccc----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCC
Q 019328          221 PVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       221 ~~~~~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk  263 (342)
                      .+...    ...+..++++.+|+|+.|.. +.+++.+++....+.-+
T Consensus        99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~~i  144 (355)
T PRK05597         99 KVTVSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARLGI  144 (355)
T ss_pred             EEEEEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence            00000    01234578899999999876 56788777765554433

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.77  E-value=0.29  Score=47.02  Aligned_cols=106  Identities=25%  Similarity=0.275  Sum_probs=59.1

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc---CCHHHHhhc
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE  236 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~  236 (342)
                      -++.++|+|+|. |+||..+|..|+ +...-++..+|..... .+. .+     +.+... .......   .+..+.++.
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~-g~a-~D-----l~~~~~-~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP-GVA-AD-----LSHIDT-PAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc-ccc-cc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence            467789999999 999999999873 1455689999983211 100 00     001111 1111111   223678899


Q ss_pred             CCEEEEcCCC--Cc-ccc-cccC------HhH---HccCCCCcEEEecCCCc
Q 019328          237 ADVISLHPVL--DK-TTY-HLIN------KER---LATMKKEAILVNCSRGP  275 (342)
Q Consensus       237 sDiV~l~lpl--t~-~t~-~li~------~~~---l~~mk~gailIN~sRG~  275 (342)
                      ||+|+++.-.  .+ +|+ .++.      ++.   +..-.+.++++.++-+-
T Consensus        77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv  128 (321)
T PTZ00325         77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV  128 (321)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence            9999988543  22 122 1221      122   33335677888776544

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.75  E-value=0.24  Score=49.58  Aligned_cols=119  Identities=13%  Similarity=0.134  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++.+|++.|+|.|.+|.++|+.| ...|.+|.++|..........       ++.. ..+.........+..+..+|+|+
T Consensus         2 ~~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~-------l~~~-~~gi~~~~g~~~~~~~~~~d~vv   72 (445)
T PRK04308          2 TFQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ-------IGKM-FDGLVFYTGRLKDALDNGFDILA   72 (445)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH-------Hhhc-cCCcEEEeCCCCHHHHhCCCEEE
Confidence            35689999999999999999997 689999999997654311110       1000 00111111111234557899998


Q ss_pred             EcCCCCc---ccc-------cccCH-hHHcc-CC---CCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          242 LHPVLDK---TTY-------HLINK-ERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       242 l~lplt~---~t~-------~li~~-~~l~~-mk---~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ...-..+   .-+       .++.+ +.+.. ++   ...+-|-=+.|..=-..-+...|+..
T Consensus        73 ~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         73 LSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            8733223   211       12222 23333 32   23455555678877777777778753

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.72  E-value=0.33  Score=46.35  Aligned_cols=124  Identities=19%  Similarity=0.337  Sum_probs=64.5

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCc--EEEEEcCChh-hHHHHHHhh-hhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA-TRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~--~V~~~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++|+|+|. |.+|..+|..|+ ..|.  +|+.+|+... ......... +...... .. ........+.+ .++.||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~-~~-~~~i~~~~d~~-~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDALAAA-GI-DAEIKISSDLS-DVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhchhcc-CC-CcEEEECCCHH-HhCCCCEE
Confidence            48999998 999999999874 4443  6999998541 111111000 0000000 00 01111123444 58999999


Q ss_pred             EEcCCCCc---ccc-cc-------cC--HhHHccCCCCcEEEecCCCccCCHHHHHHH----HHcCCccEEE
Q 019328          241 SLHPVLDK---TTY-HL-------IN--KERLATMKKEAILVNCSRGPVIDEVALVEH----LKQNPMFRVG  295 (342)
Q Consensus       241 ~l~lplt~---~t~-~l-------i~--~~~l~~mk~gailIN~sRG~~vd~~aL~~a----L~~g~i~gaa  295 (342)
                      +++.....   +++ .+       +.  ...+....|++++|+++  ..+|.-..+-.    +...++.|.+
T Consensus        77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g  146 (309)
T cd05294          77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG  146 (309)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence            99975321   121 11       10  12244445677888776  55554442221    3445666664

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.67  E-value=0.2  Score=47.79  Aligned_cols=73  Identities=21%  Similarity=0.269  Sum_probs=43.0

Q ss_pred             EEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC--cc-ccccCCHHHHhhcCCEEEE
Q 019328          167 TVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VT-WKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~l~ell~~sDiV~l  242 (342)
                      +|+|||.|.+|..+|-.|+ +.+.-++..+|...+.....-.|     +.+.....  .. .....+ -+.++.||+|++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i~~~~-y~~~~~aDivvi   74 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKIRAGD-YDDCADADIIVI   74 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEEEECC-HHHhCCCCEEEE
Confidence            5899999999999998764 34444799999875432111111     11111100  00 111223 467799999999


Q ss_pred             cCC
Q 019328          243 HPV  245 (342)
Q Consensus       243 ~lp  245 (342)
                      +.-
T Consensus        75 taG   77 (307)
T cd05290          75 TAG   77 (307)
T ss_pred             CCC
Confidence            843

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.66  E-value=0.38  Score=48.10  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             ccccCCCEEEEEcc----------ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 g~~l~gktvGIiG~----------G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      +..+.|++|+|+|+          ..-+..+++.| ...|.+|.+|||........  ..+            +   ...
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~~------------~---~~~  370 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--REY------------G---IIP  370 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hhc------------C---ccc
Confidence            45689999999999          46678999997 68899999999984321110  000            0   011


Q ss_pred             HHH-HhhcCCEEEEcCCCCcccccccCHhHHc-cCCCCcEEEecCCCcc
Q 019328          230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (342)
Q Consensus       230 l~e-ll~~sDiV~l~lplt~~t~~li~~~~l~-~mk~gailIN~sRG~~  276 (342)
                      +++ .++.||.|+++..- ++-+. ++-+.+. .||...++|+ +|+-+
T Consensus       371 ~~~~~~~~ad~vvi~t~h-~~f~~-~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        371 VSEVKSSHYDAIIVAVGH-QQFKQ-MGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             chhhhhcCCCEEEEccCC-HHhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence            222 36789999999873 33333 4444443 4564568888 46554

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=93.65  E-value=0.29  Score=47.43  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=64.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|||||. .+|+..++.+...- +.++. ++|++.+. ..++.+.|+            ...+.+++++++..|+++++
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~g------------i~~y~~~eell~d~Di~~V~   69 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRLG------------VPLYCEVEELPDDIDIACVV   69 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHhC------------CCccCCHHHHhcCCCEEEEE
Confidence            58999999 68999998864322 47766 46877653 333333332            12357999999999999999


Q ss_pred             CCCC-cccccccCHhHHccCCCCc-EEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          244 PVLD-KTTYHLINKERLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       244 lplt-~~t~~li~~~~l~~mk~ga-ilIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      +|.+ |...|.  +-..+.|+.|. +|+--==. .-+.++|+++.++..+.-.
T Consensus        70 ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        70 VRSAIVGGQGS--ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             eCCCCCCccHH--HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence            9842 222221  22333344442 22221111 2344566666666554433

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.61  E-value=0.28  Score=49.03  Aligned_cols=108  Identities=13%  Similarity=0.145  Sum_probs=60.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhc---------CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a---------~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (342)
                      -+|||+|+|.||+.+++.+.+.         .+.++. ++|++.....              ...........++++++.
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~--------------~~~~~~~~~~~d~~~ll~   69 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR--------------GVDLPGILLTTDPEELVN   69 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc--------------CCCCcccceeCCHHHHhh
Confidence            4799999999999998875321         245644 4577643310              000011123468999995


Q ss_pred             --cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCc
Q 019328          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (342)
Q Consensus       236 --~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i  291 (342)
                        +.|+|+.+++.....+    .-..+.|+.|.-+|...-+.+. .-+.|.++.++...
T Consensus        70 d~~iDvVve~tg~~~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         70 DPDIDIVVELMGGIEPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             CCCCCEEEECCCCchHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence              4699999987432111    1123555666555533222222 23567777666544

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.60  E-value=0.098  Score=45.09  Aligned_cols=72  Identities=15%  Similarity=0.092  Sum_probs=48.0

Q ss_pred             EEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       168 vGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      |.|+|. |.+|+.+++.| ..-|.+|.+..|++.+...  .....  .     .........++.+.++.+|.|+.+++.
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~--~~~~~--~-----~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED--SPGVE--I-----IQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH--CTTEE--E-----EESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc--ccccc--c-----ceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            578995 99999999997 5788999999999765321  00000  0     000011123567788999999999975


Q ss_pred             Ccc
Q 019328          247 DKT  249 (342)
Q Consensus       247 t~~  249 (342)
                      +..
T Consensus        71 ~~~   73 (183)
T PF13460_consen   71 PPK   73 (183)
T ss_dssp             TTT
T ss_pred             hcc
Confidence            444

...

>PRK08223 hypothetical protein; Validated

Probab=93.59  E-value=0.24  Score=46.82  Aligned_cols=100  Identities=13%  Similarity=0.109  Sum_probs=57.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH---HHHH---Hhhhh--------hhhccC-CCCCcc-
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR---LEKF---VTAYG--------QFLKAN-GEQPVT-  223 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~---~~~~---~~~~~--------~~~~~~-~~~~~~-  223 (342)
                      ..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|...-..   ..++   .+..|        ..++.- ....+. 
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~  101 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA  101 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence            4699999999999999999999985 5665 577777542110   0000   00000        000000 000000 


Q ss_pred             ---ccccCCHHHHhhcCCEEEEcCCCC-cccccccCHhHHcc
Q 019328          224 ---WKRASSMDEVLREADVISLHPVLD-KTTYHLINKERLAT  261 (342)
Q Consensus       224 ---~~~~~~l~ell~~sDiV~l~lplt-~~t~~li~~~~l~~  261 (342)
                         .....+.+++++.+|+|+-++..- -+++.++|..-.+.
T Consensus       102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~  143 (287)
T PRK08223        102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR  143 (287)
T ss_pred             EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc
Confidence               011346778889999998777532 26777777665543

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=93.53  E-value=0.56  Score=44.87  Aligned_cols=67  Identities=13%  Similarity=0.118  Sum_probs=48.7

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|++|+++|=   +++.++.+..+ ..||+ ++....|..-.  ..            ...........++++.++.+
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~a  218 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNS  218 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCC
Confidence            377999999998   59999999987 68999 99988875311  00            00001233457899999999


Q ss_pred             CEEEEc
Q 019328          238 DVISLH  243 (342)
Q Consensus       238 DiV~l~  243 (342)
                      |+|...
T Consensus       219 Dvvy~~  224 (310)
T PRK13814        219 DVIVTL  224 (310)
T ss_pred             CEEEEC
Confidence            999873

>PRK10206 putative oxidoreductase; Provisional

Probab=93.53  E-value=0.21  Score=48.34  Aligned_cols=68  Identities=15%  Similarity=0.221  Sum_probs=42.7

Q ss_pred             EEEEEccChHHHH-HHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328          167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       167 tvGIiG~G~IG~~-vA~~l~~a-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~  241 (342)
                      ++||||+|.|++. .+..+... -++++. ++|++++..  .+.+.|+           ....+.+++++++  +.|+|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~~-----------~~~~~~~~~ell~~~~iD~V~   69 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIYS-----------HIHFTSDLDEVLNDPDVKLVV   69 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhcC-----------CCcccCCHHHHhcCCCCCEEE
Confidence            7999999998863 34433222 257776 588875432  2222221           0123578999996  569999


Q ss_pred             EcCCCC
Q 019328          242 LHPVLD  247 (342)
Q Consensus       242 l~lplt  247 (342)
                      +++|..
T Consensus        70 I~tp~~   75 (344)
T PRK10206         70 VCTHAD   75 (344)
T ss_pred             EeCCch
Confidence            999943

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=93.31  E-value=0.31  Score=46.52  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=51.1

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      +|+|+|- |-.|.++.|+|+.--.+++.....+...                        ...+.+++++++|++++|+|
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp   58 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP   58 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence            7999997 9999999999865556676655322110                        01245677789999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .. .+..+. ...   .+.|..+|+.|
T Consensus        59 ~~-~s~~~~-~~~---~~~g~~VIDlS   80 (310)
T TIGR01851        59 DD-AAREAV-SLV---DNPNTCIIDAS   80 (310)
T ss_pred             HH-HHHHHH-HHH---HhCCCEEEECC
Confidence            43 222221 111   24688888887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=93.29  E-value=0.52  Score=47.42  Aligned_cols=110  Identities=20%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEcc----ChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh
Q 019328          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       162 ~l~gktvGIiG~----G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (342)
                      -++-++|.|||.    |.+|..+.+.| +..|+  +|+.++|.....                   .+...+.+++++-.
T Consensus         4 l~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~   63 (447)
T TIGR02717         4 LFNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPD   63 (447)
T ss_pred             ccCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCC
Confidence            356689999999    88999999997 55554  798888864320                   11233568999988


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCcc-----CCHHHHHHHHHcCCccEE
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPV-----IDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~-----vd~~aL~~aL~~g~i~ga  294 (342)
                      ..|++++++|- +.+...+. +..+ .+-++++| .-+-++.     -.++.|.++.+++.+.-.
T Consensus        64 ~~Dlavi~vp~-~~~~~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        64 PVDLAVIVVPA-KYVPQVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             CCCEEEEecCH-HHHHHHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence            89999999992 22333332 2222 34444444 3333332     235778888777766544

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.21  E-value=0.22  Score=52.13  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=58.1

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV  240 (342)
                      ..++-|+|+|++|+.+|+.| +..|.++.+.|.+++.....         +..+. ..-+....+.+-+    ++++|.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~~---------~~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHIETL---------RKFGM-KVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHHHHH---------HhcCC-eEEEEeCCCHHHHHhcCCCcCCEE
Confidence            46899999999999999998 68899999999887642211         11111 1111112233322    4689999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEe
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN  270 (342)
                      +++++..+.+..+  ....+.+.|+..++-
T Consensus       469 vv~~~d~~~n~~i--~~~ar~~~p~~~iia  496 (621)
T PRK03562        469 INAIDDPQTSLQL--VELVKEHFPHLQIIA  496 (621)
T ss_pred             EEEeCCHHHHHHH--HHHHHHhCCCCeEEE
Confidence            9999866555443  234444556655543

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=93.20  E-value=0.24  Score=44.64  Aligned_cols=74  Identities=15%  Similarity=0.160  Sum_probs=47.7

Q ss_pred             EEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       168 vGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      |.|+|. |.+|+.+++.|. .-+.+|.+.-|..++.........+...-     ...+....++.+.++.+|.|++++|.
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~~~g~~vv-----~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQALGAEVV-----EADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHHHTTTEEE-----ES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhhcccceEe-----ecccCCHHHHHHHHcCCceEEeecCc
Confidence            678996 999999999985 57889998888764322211111111100     01112235678889999999999995


Q ss_pred             C
Q 019328          247 D  247 (342)
Q Consensus       247 t  247 (342)
                      .
T Consensus        75 ~   75 (233)
T PF05368_consen   75 S   75 (233)
T ss_dssp             S
T ss_pred             c
Confidence            4

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07411 hypothetical protein; Validated

Probab=93.20  E-value=0.23  Score=48.99  Aligned_cols=102  Identities=18%  Similarity=0.128  Sum_probs=60.2

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH---HHHH---Hhhhh--------hhhccC-CCCCccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR---LEKF---VTAYG--------QFLKAN-GEQPVTW  224 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~---~~~~---~~~~~--------~~~~~~-~~~~~~~  224 (342)
                      ..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-..   ...+   ....|        ..++.- ....+..
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~  112 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL  112 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            4699999999999999999999985 5665 677777652110   0000   00000        000000 0000000


Q ss_pred             c----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCC
Q 019328          225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  264 (342)
Q Consensus       225 ~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~  264 (342)
                      .    ...+..++++.+|+|+.|+- +.+++.++|+...+.-+|
T Consensus       113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence            0    11234578899999988876 567888888776665555

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.11  E-value=0.3  Score=45.80  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ..+.||++-|.|. |.||..+|++++ ..|++|+.++++..
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4788999999995 889999999984 67999999988753

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.09  E-value=0.36  Score=44.94  Aligned_cols=37  Identities=27%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~  201 (342)
                      .|++|.|+|.|.||...++.+ +.+|++ |++.++++.+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~r  157 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPDR  157 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            588999999999999999985 899996 8888876543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.09  E-value=0.32  Score=46.57  Aligned_cols=99  Identities=20%  Similarity=0.285  Sum_probs=57.5

Q ss_pred             EEEEEcc-ChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc---cCCHHHHhhcCCEEE
Q 019328          167 TVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS  241 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~sDiV~  241 (342)
                      +|+|||. |.+|..+|-.|+ +.+.-++..+|... ..-+.  ..    +.+ .........   ..++.+.++.||+|+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a--~D----L~~-~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVA--AD----LSH-IPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEE--ch----hhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence            5899999 999999998764 24445899999875 21000  00    111 111111111   123567899999999


Q ss_pred             EcCCC--Cc-ccccc-c--CH-------hHHccCCCCcEEEecCC
Q 019328          242 LHPVL--DK-TTYHL-I--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lpl--t~-~t~~l-i--~~-------~~l~~mk~gailIN~sR  273 (342)
                      ++.-.  .| .+|.- +  |.       +.+..-.|++++|+++-
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN  117 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN  117 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            88542  22 22211 1  11       23444578999999865

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK06392 homoserine dehydrogenase; Provisional

Probab=93.07  E-value=0.3  Score=47.08  Aligned_cols=121  Identities=12%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             EEEEEccChHHHHHHHHHHhc-------CCcEEEEE-cCChhhHHHH-H-HhhhhhhhccCCCCCccccccCCHHHHh-h
Q 019328          167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYY-DLYQATRLEK-F-VTAYGQFLKANGEQPVTWKRASSMDEVL-R  235 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a-------~g~~V~~~-d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~ell-~  235 (342)
                      +|+|+|+|++|+.+++.|.+.       ++.+|.+. |++.....+. + .+..-............ ....++++++ .
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~-~~~~~~~~ll~~   80 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEID-YEKIKFDEIFEI   80 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCC-CCcCCHHHHhcC
Confidence            799999999999999987432       66776644 5432100000 0 00000000000000000 0012566664 4


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQN  289 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g  289 (342)
                      ++|+|+=|.|...+-.. .-.-..+.|+.|.-+|-.+-|.+. .-+.|.++.+++
T Consensus        81 ~~DVvVE~t~~~~~g~~-~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~  134 (326)
T PRK06392         81 KPDVIVDVTPASKDGIR-EKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN  134 (326)
T ss_pred             CCCEEEECCCCCCcCch-HHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence            68999999875321110 112235556788888877777765 455666665554

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=92.96  E-value=0.37  Score=46.10  Aligned_cols=100  Identities=22%  Similarity=0.262  Sum_probs=58.6

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc--c-CCHHHHhhcCCE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADV  239 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~sDi  239 (342)
                      .+|+|||. |++|..+|-.|+ .-+  -++..+|.. ...-+.  ..    +.+.. .......  . .++.+.++.||+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~-~a~g~a--lD----L~~~~-~~~~i~~~~~~~~~y~~~~daDi   71 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIV-NTPGVA--AD----LSHIN-TPAKVTGYLGPEELKKALKGADV   71 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecC-ccceee--hH----hHhCC-CcceEEEecCCCchHHhcCCCCE
Confidence            37999999 999999999863 334  479999987 321111  00    11111 1111111  1 234677899999


Q ss_pred             EEEcC--CCCc-cccccc---CH-------hHHccCCCCcEEEecCCC
Q 019328          240 ISLHP--VLDK-TTYHLI---NK-------ERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~l--plt~-~t~~li---~~-------~~l~~mk~gailIN~sRG  274 (342)
                      |+++.  |..| +||--+   |.       +.+..-.|.+++||++--
T Consensus        72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            99884  4333 233221   11       234445789999999754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.96  E-value=0.33  Score=45.87  Aligned_cols=88  Identities=13%  Similarity=0.020  Sum_probs=54.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .|+++.|+|.|.||...++.+ +.+|++ |.+.|+........            ....  .  ...-++.-...|+|+-
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~~rl~~a------------~~~~--~--i~~~~~~~~g~Dvvid  206 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNPRRRDGA------------TGYE--V--LDPEKDPRRDYRAIYD  206 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHHHhh------------hhcc--c--cChhhccCCCCCEEEE
Confidence            467899999999999999985 899997 55667654332111            0000  0  0000111235788888


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +..... +    -...++.++++..++.++-
T Consensus       207 ~~G~~~-~----~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       207 ASGDPS-L----IDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             CCCCHH-H----HHHHHHhhhcCcEEEEEee
Confidence            876321 1    1456788999999988763

>PRK12937 short chain dehydrogenase; Provisional

Probab=92.91  E-value=0.43  Score=42.86  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      .+.||++-|.|. |.||+.+|+.| ...|++|+...++.
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~   39 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGS   39 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCC
Confidence            467899999996 99999999998 47799988766543

>PRK04148 hypothetical protein; Provisional

Probab=92.89  E-value=0.34  Score=40.48  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +++++.+||+| -|..+|+.| +..|.+|++.|.++..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~a   51 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKA   51 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHH
Confidence            56889999999 899999998 5789999999998864

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=92.89  E-value=1.2  Score=43.03  Aligned_cols=78  Identities=10%  Similarity=0.042  Sum_probs=47.7

Q ss_pred             c-CCCEEEEEccC-------hHHHHHHHHHHhcCCcEEEEEcC-ChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328          163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       163 l-~gktvGIiG~G-------~IG~~vA~~l~~a~g~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (342)
                      + .|+||+|+|.|       ++.++++..+ ..||++|.+..| ..-...+.+.+......+..   +.......++++.
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~ea  241 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAES---GGSLTVSHDIDSA  241 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHc---CCeEEEEcCHHHH
Confidence            5 78999887654       6788888876 589999999998 22110111111000000111   1123345799999


Q ss_pred             hhcCCEEEEcC
Q 019328          234 LREADVISLHP  244 (342)
Q Consensus       234 l~~sDiV~l~l  244 (342)
                      ++++|+|..-.
T Consensus       242 ~~~aDvvy~~~  252 (335)
T PRK04523        242 YAGADVVYAKS  252 (335)
T ss_pred             hCCCCEEEece
Confidence            99999998754

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=92.78  E-value=3.4  Score=39.18  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=67.0

Q ss_pred             cCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++|+|+..+|=| +++.++.... ..|||++....|..-...+++.+.........   +.......++++.++.+|+|.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~---g~~i~~t~d~~eAv~gADvvy  226 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKES---GGKITLTEDPEEAVKGADVVY  226 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhc---CCeEEEecCHHHHhCCCCEEE
Confidence            999999999986 6788887774 58999999887653222222222211111111   112334578999999999998


Q ss_pred             EcCCC--Ccccc-----------cccCHhHHccCCCCcEEEec
Q 019328          242 LHPVL--DKTTY-----------HLINKERLATMKKEAILVNC  271 (342)
Q Consensus       242 l~lpl--t~~t~-----------~li~~~~l~~mk~gailIN~  271 (342)
                      .-+..  ..+..           --+|++.++.-+++++|.-|
T Consensus       227 TDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         227 TDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             ecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            76442  22221           34577778888888888776

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.72  E-value=0.52  Score=44.83  Aligned_cols=96  Identities=21%  Similarity=0.162  Sum_probs=59.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH---HHHhh--cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVLR--EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell~--~s  237 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.+++..+..  +..+++.       .........+.   .++..  ..
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~~~--~~~~~ga-------~~~i~~~~~~~~~~~~~~~~~~~  232 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPERLE--LAKALGA-------DFVINSGQDDVQEIRELTSGAGA  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHhCC-------CEEEcCCcchHHHHHHHhCCCCC
Confidence            389999999999999999985 899999 999888765421  1122221       00000000112   22222  47


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+|+-+.....     .....++.++++..++.++..
T Consensus       233 d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         233 DVAIECSGNTA-----ARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             CEEEECCCCHH-----HHHHHHHHhhcCCEEEEEcCC
Confidence            88887766221     123457788888888887653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.66  E-value=0.35  Score=48.43  Aligned_cols=114  Identities=20%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc-cCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~sDiV~l~  243 (342)
                      +-+++|+|+|.+|.++|+.| ...|.+|.++|..........       ++... .+..... ..+ .+.+.++|+|+..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~s   75 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREF-PDVELRCGGFD-CELLVQASEIIIS   75 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhc-CCcEEEeCCCC-hHHhcCCCEEEEC
Confidence            45899999999999999997 689999999997653211110       11100 0111111 112 3445789998776


Q ss_pred             --CCCC-cccc-------cccCH-hHHc-cCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          244 --PVLD-KTTY-------HLINK-ERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       244 --lplt-~~t~-------~li~~-~~l~-~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                        +|.+ |+-+       .++++ +.+. .++...+-|-=+.|..--..-+...|+.
T Consensus        76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence              3322 2111       23333 2332 3444445555567887777777777875

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=92.58  E-value=0.28  Score=41.65  Aligned_cols=85  Identities=19%  Similarity=0.263  Sum_probs=51.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ...|++|++||+  + ++++++| +.-+.+++++|+++......               . ........++++++||+|+
T Consensus         8 ~~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~~---------------~-~~~~~~~~~~~l~~aD~vi   67 (147)
T PF04016_consen    8 IGPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGEE---------------P-GDVPDEDAEEILPWADVVI   67 (147)
T ss_dssp             TTTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS---------------C-T-EEGGGHHHHGGG-SEEE
T ss_pred             hcCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCCC---------------C-CcCCHHHHHHHHccCCEEE
Confidence            357899999996  1 2367776 57889999999988542110               0 0012346778999999998


Q ss_pred             EcCCCCcccccccC---HhHHccCCCCcEEEecC
Q 019328          242 LHPVLDKTTYHLIN---KERLATMKKEAILVNCS  272 (342)
Q Consensus       242 l~lplt~~t~~li~---~~~l~~mk~gailIN~s  272 (342)
                      +.=.      -++|   .+.++..++++.++=+|
T Consensus        68 iTGs------TlvN~Ti~~iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   68 ITGS------TLVNGTIDDILELARNAREVILYG   95 (147)
T ss_dssp             EECH------HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred             EEee------eeecCCHHHHHHhCccCCeEEEEe
Confidence            7621      1222   34666666565555444

; PDB: 3L5O_B 3NPG_A.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.51  E-value=0.42  Score=47.64  Aligned_cols=114  Identities=18%  Similarity=0.103  Sum_probs=64.9

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++.++++.|+|+|..|.+.++.| +..|.+|.++|..........       +. .   +..........+.+...|+|+
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~---g~~~~~~~~~~~~~~~~d~vv   70 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-E---NVERHTGSLNDEWLLAADLIV   70 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-c---CCEEEeCCCCHHHhcCCCEEE
Confidence            45689999999999999999887 688999999997653211010       10 0   111111111224456788766


Q ss_pred             EcCCCCccccc-----------ccCH-hHHcc-CCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          242 LHPVLDKTTYH-----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~~-----------li~~-~~l~~-mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      .. |.-+...-           ++.+ +.+.. ++...+-|-=+.|..--..-|...|+.
T Consensus        71 ~s-pgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         71 AS-PGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             EC-CCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            54 32222211           2222 33333 333344455567887777777777775

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=92.41  E-value=0.15  Score=41.10  Aligned_cols=87  Identities=11%  Similarity=0.209  Sum_probs=51.9

Q ss_pred             ccChHHHHHHHHHHhc---CCcEEE-EEcCC--hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEEc
Q 019328          172 GAGRIGSAYARMMVEG---FKMNLI-YYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a---~g~~V~-~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l~  243 (342)
                      |+|.||+.+++.+.+.   +++++. +++++  .........              .......++++++.  ..|+|+=|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999997432   267765 45666  111111000              01123468999998  99999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      .+..+-     .+-..+.++.|.-+|-.+-|.+.
T Consensus        67 t~~~~~-----~~~~~~~L~~G~~VVt~nk~ala   95 (117)
T PF03447_consen   67 TSSEAV-----AEYYEKALERGKHVVTANKGALA   95 (117)
T ss_dssp             SSCHHH-----HHHHHHHHHTTCEEEES-HHHHH
T ss_pred             CCchHH-----HHHHHHHHHCCCeEEEECHHHhh
Confidence            553222     23355667789999988888887

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=92.37  E-value=0.64  Score=44.38  Aligned_cols=152  Identities=14%  Similarity=0.114  Sum_probs=80.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|.|+|.|.||.-++-+|+ ..|..|..+-|.+.  .+++... +-.+...............-.+.+..+|+|++++-
T Consensus         1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK   76 (307)
T COG1893           1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK   76 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence            47999999999999999984 66777777776653  2222221 21122111100001112233455668999999986


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE-EEeec-CCCCCCCCCCccCCCceEEcCCCCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR-VGLDV-FEDEPYMKPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g-aalDV-~~~EP~~~~~L~~~~nvi~TPHia~  323 (342)
                      .. +|... -+......++.+.++-+--|- =.++.+-+.....++.+ ...=. ...+|. .-.......+.+.+..++
T Consensus        77 a~-q~~~a-l~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il~G~~~~~a~~~~~g-~v~~~g~g~~~ig~~~~~  152 (307)
T COG1893          77 AY-QLEEA-LPSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVLGGVTTHGAVREGPG-HVVHTGLGDTVIGELRGG  152 (307)
T ss_pred             cc-cHHHH-HHHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEEEEEeeeeeEecCCc-eEEEecCCcEEEccCCCC
Confidence            33 33332 244556677787776544432 33445555555553332 21111 111221 112344567777777776


Q ss_pred             Cc
Q 019328          324 AS  325 (342)
Q Consensus       324 ~t  325 (342)
                      .+
T Consensus       153 ~~  154 (307)
T COG1893         153 RD  154 (307)
T ss_pred             ch
Confidence            55

>PRK06128 oxidoreductase; Provisional

Probab=92.37  E-value=0.5  Score=44.40  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      .+.||++-|.|- |.||+.+|+.|+ ..|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence            478999999997 999999999984 679998876554

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.13  E-value=0.57  Score=43.30  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             cCCCEEEEEccC---hHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       163 l~gktvGIiG~G---~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      +.||++-|.|-+   .||+++|+.|+ .-|++|+..+++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence            689999999997   69999999985 679999988776

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=92.12  E-value=0.42  Score=45.74  Aligned_cols=77  Identities=22%  Similarity=0.231  Sum_probs=49.3

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+||| .|-.|+++.+.|...=..++.....+...                   .     ..+.++.++++|++++|+
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFlal   58 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILCL   58 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEECC
Confidence            4799999 59999999999853334566554332111                   0     023345667899999999


Q ss_pred             CCCcccccccCHhHHccC-CCCcEEEecC
Q 019328          245 VLDKTTYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       245 plt~~t~~li~~~~l~~m-k~gailIN~s  272 (342)
                      |...      ..+....+ +.|..+|+.|
T Consensus        59 p~~~------s~~~~~~~~~~g~~VIDlS   81 (313)
T PRK11863         59 PDDA------AREAVALIDNPATRVIDAS   81 (313)
T ss_pred             CHHH------HHHHHHHHHhCCCEEEECC
Confidence            9432      22222222 5688899887

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.11  E-value=0.16  Score=42.05  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=27.9

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~  199 (342)
                      .++|.|+|+|.+|..+|+.|+ ..|+ ++..+|+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence            579999999999999999985 5576 788888653

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=92.06  E-value=0.51  Score=52.11  Aligned_cols=107  Identities=8%  Similarity=0.063  Sum_probs=65.7

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH-hhhhh------h----hccCC----C----CCcc
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV-TAYGQ------F----LKANG----E----QPVT  223 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~-~~~~~------~----~~~~~----~----~~~~  223 (342)
                      +.-.++.|+|.|+.|+..++.+ .++|++ . .++..-+...... .....      +    .....    .    ....
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            4457899999999999999986 789888 2 3332211110000 00000      0    00000    0    0000


Q ss_pred             ------ccccCC-HHHHhhcCCEEEEcCCCCcccccccCHh-HHccCCCCc----EEEecC
Q 019328          224 ------WKRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS  272 (342)
Q Consensus       224 ------~~~~~~-l~ell~~sDiV~l~lplt~~t~~li~~~-~l~~mk~ga----ilIN~s  272 (342)
                            -.+... +++.+..+|+++.|+-..+.+-.++.++ ..+.||+|.    ++++++
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                  000112 3578899999999998888888999888 777899998    888876

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=92.02  E-value=0.39  Score=40.88  Aligned_cols=31  Identities=35%  Similarity=0.583  Sum_probs=24.8

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEE-EcC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL  197 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~  197 (342)
                      +|||+|+|+||+.+++.+...-++++.+ +|+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            7999999999999999864446788765 454

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PLN00106 malate dehydrogenase

Probab=91.94  E-value=0.48  Score=45.58  Aligned_cols=125  Identities=22%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCC-Cccc-cccCCHHHHhhcCCE
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~sDi  239 (342)
                      ..++|+|+|. |++|..+|..|+. .+.-++..+|..... .+. .+     +.+.... .... ....++.+.++.||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a-~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVA-AD-----VSHINTPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeE-ch-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence            4469999999 9999999998742 344489999986611 100 00     0000110 1111 123456788999999


Q ss_pred             EEEcC--CCCc-cccccc---C----H---hHHccCCCCcEEEecCCCcc----CCHHHHHHH--HHcCCccEEE
Q 019328          240 ISLHP--VLDK-TTYHLI---N----K---ERLATMKKEAILVNCSRGPV----IDEVALVEH--LKQNPMFRVG  295 (342)
Q Consensus       240 V~l~l--plt~-~t~~li---~----~---~~l~~mk~gailIN~sRG~~----vd~~aL~~a--L~~g~i~gaa  295 (342)
                      |+++.  |..| .++.-+   |    .   +.+....|.+++++++----    +....+.+.  +...++.|.+
T Consensus        90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~  164 (323)
T PLN00106         90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT  164 (323)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence            99884  3332 233211   1    1   23444568999999876543    333333332  2334566654

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.93  E-value=0.69  Score=44.80  Aligned_cols=96  Identities=16%  Similarity=0.196  Sum_probs=55.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcc-ccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~sDiV~l  242 (342)
                      .|++|.|.|.|.+|...++.+ +.+|++|++.+.+..+..+ ...+++       ..... ......+.++....|+|+-
T Consensus       183 ~g~~VlV~G~G~vG~~avq~A-k~~Ga~vi~~~~~~~~~~~-~~~~~G-------a~~vi~~~~~~~~~~~~~~~D~vid  253 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIG-KAFGLKVTVISSSSNKEDE-AINRLG-------ADSFLVSTDPEKMKAAIGTMDYIID  253 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcchhhh-HHHhCC-------CcEEEcCCCHHHHHhhcCCCCEEEE
Confidence            588999999999999999984 8999999887766543211 111111       00000 0000122333334688887


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ++.. +.+    -...++.++++..++.++.
T Consensus       254 ~~g~-~~~----~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        254 TVSA-VHA----LGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             CCCC-HHH----HHHHHHHhcCCcEEEEeCC
Confidence            7652 111    1235667777777777653

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=91.89  E-value=1.2  Score=41.43  Aligned_cols=161  Identities=21%  Similarity=0.247  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcC----Cc-------E
Q 019328          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N  191 (342)
Q Consensus       123 vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~----g~-------~  191 (342)
                      +|=-+++-+|+..|-.                     |+.|...++.|+|.|.-|-.+|+.|. ..    |.       +
T Consensus         4 TaaV~lAgll~Al~~~---------------------g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~~   61 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT---------------------GKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARKR   61 (255)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------TS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHTT
T ss_pred             hHHHHHHHHHHHHHHh---------------------CCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhcc
Confidence            4555677777666543                     45799999999999999999999874 44    66       5


Q ss_pred             EEEEcCCh-----hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC--CEEEEcCCCCcccccccCHhHHccCCC
Q 019328          192 LIYYDLYQ-----ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK  264 (342)
Q Consensus       192 V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--DiV~l~lplt~~t~~li~~~~l~~mk~  264 (342)
                      ++.+|+.-     ++....+...|   .+.... .   ....+|.|+++.+  |+++=.-    ...+.|+++.++.|.+
T Consensus        62 i~lvD~~Gll~~~r~~l~~~~~~~---a~~~~~-~---~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~  130 (255)
T PF03949_consen   62 IWLVDSKGLLTDDREDLNPHKKPF---ARKTNP-E---KDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAK  130 (255)
T ss_dssp             EEEEETTEEEBTTTSSHSHHHHHH---HBSSST-T---T--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHH
T ss_pred             EEEEeccceEeccCccCChhhhhh---hccCcc-c---ccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhc
Confidence            88888762     11111122222   111111 1   1125999999999  9987662    2568899999999988


Q ss_pred             ---CcEEEecCCCccCCHHHHHHHHHcCC---ccEEEeecCCCCCCCC-------CCccCCCceEEcCCCC
Q 019328          265 ---EAILVNCSRGPVIDEVALVEHLKQNP---MFRVGLDVFEDEPYMK-------PGLSEMKNAIVVPHIA  322 (342)
Q Consensus       265 ---gailIN~sRG~~vd~~aL~~aL~~g~---i~gaalDV~~~EP~~~-------~~L~~~~nvi~TPHia  322 (342)
                         .+++.=.|.-..--|-.-.+|.+-+.   |.+.|      -|.++       ...-+..|+++-|=++
T Consensus       131 ~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtG------Spf~pv~~~Gr~~~p~Q~NN~~iFPGig  195 (255)
T PF03949_consen  131 HNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATG------SPFPPVEYNGRSDYPNQCNNSYIFPGIG  195 (255)
T ss_dssp             HSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEES------S----EEETSCEESSCE-SGGGTHHHHH
T ss_pred             cCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecC------CccCCeeeCCeEEecCCCCeeEeeccce
Confidence               89999999877643444444444332   22322      22111       1234567888888665

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=91.89  E-value=0.71  Score=44.38  Aligned_cols=164  Identities=15%  Similarity=0.089  Sum_probs=90.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHh------cCCcE--EEEEcCChhhHHHHHHhhhhhh-----hccCCCCCccccccC
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVE------GFKMN--LIYYDLYQATRLEKFVTAYGQF-----LKANGEQPVTWKRAS  228 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~------a~g~~--V~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  228 (342)
                      +-.-++|+|||.|+=|..+|+.++.      .|..+  .|.|+-....+.+...+...+.     .-.....+.......
T Consensus        18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            3445789999999999999998642      23333  4444322211101111111000     000112233334467


Q ss_pred             CHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC---------HHHHHHHHHc--CCccEE--E
Q 019328          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---------EVALVEHLKQ--NPMFRV--G  295 (342)
Q Consensus       229 ~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd---------~~aL~~aL~~--g~i~ga--a  295 (342)
                      ++.+.+.+||+++..+|-  +-..-|-++...+.||++..|...-|=-+.         .+-+-++|.-  +-+.||  |
T Consensus        98 dl~ea~~dADilvf~vPh--Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA  175 (372)
T KOG2711|consen   98 DLVEAAKDADILVFVVPH--QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIA  175 (372)
T ss_pred             hHHHHhccCCEEEEeCCh--hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchH
Confidence            899999999999999993  323334577888899999999887663322         2233344432  123333  2


Q ss_pred             eecCCCCCCC----------CC----CccCCCceEEcCCCCCCcHH
Q 019328          296 LDVFEDEPYM----------KP----GLSEMKNAIVVPHIASASKW  327 (342)
Q Consensus       296 lDV~~~EP~~----------~~----~L~~~~nvi~TPHia~~t~~  327 (342)
                      ..|...++..          .+    .|++.|+..++.---..+.|
T Consensus       176 ~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VE  221 (372)
T KOG2711|consen  176 SEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVE  221 (372)
T ss_pred             HHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhH
Confidence            2444444421          11    37788888887754444433

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=91.87  E-value=0.54  Score=44.70  Aligned_cols=98  Identities=18%  Similarity=0.254  Sum_probs=54.2

Q ss_pred             EEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhcCCEEEEcCC--
Q 019328          170 VIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLHPV--  245 (342)
Q Consensus       170 IiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDiV~l~lp--  245 (342)
                      |||.|.+|..+|..|+ +.+.-++..+|.+.......-.| .    .+.. ..........+-.+.+++||+|+++.-  
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D-l----~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~   75 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD-L----QHAASFLPTPKKIRSGDYSDCKDADLVVITAGAP   75 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH-H----HHhhcccCCCeEEecCCHHHHCCCCEEEECCCCC
Confidence            6899999999999864 23444799999876432111111 1    1110 000000111233567899999999743  


Q ss_pred             CCc-cccc-cc--C-------HhHHccCCCCcEEEecC
Q 019328          246 LDK-TTYH-LI--N-------KERLATMKKEAILVNCS  272 (342)
Q Consensus       246 lt~-~t~~-li--~-------~~~l~~mk~gailIN~s  272 (342)
                      ..| .+|. ++  |       .+.+....|.+++|+++
T Consensus        76 rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        76 QKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            222 1231 11  1       12344457899999987

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK07877 hypothetical protein; Provisional

Probab=91.86  E-value=0.31  Score=51.75  Aligned_cols=98  Identities=20%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhh-----HHHHHHhhhh--------hhhccCC-CCCccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQAT-----RLEKFVTAYG--------QFLKANG-EQPVTW  224 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~-----~~~~~~~~~~--------~~~~~~~-~~~~~~  224 (342)
                      ..|.+++|+|+|+| +|..+|..|+ ..|.  ++..+|...-.     +.-......|        ..+..-. ...+..
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            46999999999999 9999999985 4552  67777644210     0000000000        0000000 000100


Q ss_pred             ----cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          225 ----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       225 ----~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                          ....+++++++.+|+|+-|+. +-+++.++|+...++
T Consensus       181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                012468889999999999998 578999998776654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=91.76  E-value=0.32  Score=36.29  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=29.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ++.|||-|.+|-++|..| ..+|.+|..+++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence            588999999999999998 689999999988754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK15076 alpha-galactosidase; Provisional

Probab=91.74  E-value=0.7  Score=46.28  Aligned_cols=77  Identities=14%  Similarity=0.140  Sum_probs=46.2

Q ss_pred             CEEEEEccChHHHHHHH--HHH--hcC-CcEEEEEcCChhhHH--HHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~--~l~--~a~-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+|+|||.|.+|...+-  .++  .++ +.+|..||..++...  ......   .....+ .........++.+.++.||
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~---~~~~~~-~~~~i~~ttD~~eal~dAD   77 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARK---LAESLG-ASAKITATTDRREALQGAD   77 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHH---HHHhcC-CCeEEEEECCHHHHhCCCC
Confidence            48999999999955433  222  344 458999999875422  111111   111111 1222333568889999999


Q ss_pred             EEEEcCCC
Q 019328          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~lpl  246 (342)
                      +|+.++-.
T Consensus        78 fVv~ti~v   85 (431)
T PRK15076         78 YVINAIQV   85 (431)
T ss_pred             EEeEeeee
Confidence            99988554

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=91.60  E-value=0.88  Score=43.65  Aligned_cols=90  Identities=11%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV  240 (342)
                      .|.+|.|+|.|.||...++.+++.+| .+|++.++++.+....  ..+       +     ..  ...+++.+  ..|+|
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a--~~~-------~-----~~--~~~~~~~~~~g~d~v  226 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF--SFA-------D-----ET--YLIDDIPEDLAVDHA  226 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH--hhc-------C-----ce--eehhhhhhccCCcEE
Confidence            48899999999999999887532354 6899999876542111  111       1     00  01112222  37999


Q ss_pred             EEcCCC--CcccccccCHhHHccCCCCcEEEecCC
Q 019328          241 SLHPVL--DKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lpl--t~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +-++..  ++.+    -...++.++++..++.++-
T Consensus       227 iD~~G~~~~~~~----~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         227 FECVGGRGSQSA----INQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             EECCCCCccHHH----HHHHHHhCcCCcEEEEEee
Confidence            888763  1111    1356788999999988764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=91.60  E-value=0.83  Score=44.29  Aligned_cols=95  Identities=14%  Similarity=0.109  Sum_probs=58.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHh---h-cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL---R-EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell---~-~s  237 (342)
                      .|.+|.|.|.|.+|...++.+ +..|+ +|++.++++.+..  +...++.       .........++ +++.   . ..
T Consensus       191 ~g~~VlV~G~G~vG~~a~~la-k~~G~~~Vi~~~~~~~r~~--~a~~~Ga-------~~~i~~~~~~~~~~i~~~~~~g~  260 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGA-VAAGASQVVAVDLNEDKLA--LARELGA-------TATVNAGDPNAVEQVRELTGGGV  260 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEEcCCHHHHH--HHHHcCC-------ceEeCCCchhHHHHHHHHhCCCC
Confidence            478999999999999999984 89999 6999988765432  2122221       00000001122 1221   1 37


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+-++...+ +    -...++.++++..++.++-
T Consensus       261 d~vid~~G~~~-~----~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         261 DYAFEMAGSVP-A----LETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CEEEECCCChH-H----HHHHHHHHhcCCEEEEEcc
Confidence            88888875222 1    2345777889989888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=91.58  E-value=0.23  Score=47.47  Aligned_cols=80  Identities=24%  Similarity=0.336  Sum_probs=47.2

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC-ccc-ccc-CCHHHHhhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTW-KRA-SSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~l~ell~~sDiV~  241 (342)
                      ++|+|||.|.||+.+|-+|. +.++-++..||...... +.....    +.+..... ... ... .+ -+.++.||+|+
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~-~G~a~D----L~~~~~~~~~~~~i~~~~~-y~~~~~aDiVv   74 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKA-EGVALD----LSHAAAPLGSDVKITGDGD-YEDLKGADIVV   74 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccc-cchhcc----hhhcchhccCceEEecCCC-hhhhcCCCEEE
Confidence            47999999999999998874 35666899999883321 110000    11101000 000 111 12 45678999999


Q ss_pred             EcC--CCCcc-cc
Q 019328          242 LHP--VLDKT-TY  251 (342)
Q Consensus       242 l~l--plt~~-t~  251 (342)
                      ++.  |..|- ||
T Consensus        75 itAG~prKpGmtR   87 (313)
T COG0039          75 ITAGVPRKPGMTR   87 (313)
T ss_pred             EeCCCCCCCCCCH
Confidence            986  66554 44

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=91.58  E-value=2.2  Score=35.65  Aligned_cols=99  Identities=16%  Similarity=0.160  Sum_probs=64.0

Q ss_pred             HHHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019328          179 AYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (342)
Q Consensus       179 ~vA~~l~~a~g~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~  255 (342)
                      ..+++| ...|.+|++=.-.-..   ..++|.+             .++.-..+-++++++||+|+-.=|.+        
T Consensus        18 ~~v~~L-~~~G~~V~VE~gaG~~a~fsD~~Y~~-------------aGA~I~~~~~ev~~~adiIl~v~~p~--------   75 (136)
T PF05222_consen   18 EDVKKL-VKLGHEVLVESGAGEGAGFSDEEYEE-------------AGAEIVSRAEEVYSDADIILKVKPPS--------   75 (136)
T ss_dssp             HHHHHH-HHTTSEEEEETTTTGGGTB-HHHHHH-------------TTEEEESSHHHHHTTSSEEEESS-----------
T ss_pred             HHHHHH-HhCCCEEEEECCCCCcCcccHHHHhh-------------CCcEEecCchhhcccCCEEEEECCCC--------
Confidence            345565 4669999875433211   1112211             22333456679999999998876643        


Q ss_pred             HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (342)
Q Consensus       256 ~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~  301 (342)
                      .+.++.|++|.++|-...-.  ....+++.|.++++...++|-...
T Consensus        76 ~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   76 EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            56888999999999776554  588999999999999999887655

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.57  E-value=0.55  Score=44.87  Aligned_cols=91  Identities=15%  Similarity=0.151  Sum_probs=57.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .|.+|.|.|.|.+|...++. ++.+|++|++.+++..+..  +..+++.       ....    ...++.-...|+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~~--~a~~~Ga-------~~vi----~~~~~~~~~~d~~i~~  230 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAARR--LALALGA-------ASAG----GAYDTPPEPLDAAILF  230 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHHH--HHHHhCC-------ceec----cccccCcccceEEEEC
Confidence            47899999999999998887 5899999999988765432  2222221       0000    0000111235776666


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .... +    .-...++.++++..++.++.
T Consensus       231 ~~~~-~----~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       231 APAG-G----LVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             CCcH-H----HHHHHHHhhCCCcEEEEEec
Confidence            5432 2    23457788999999988774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=91.51  E-value=0.37  Score=44.57  Aligned_cols=96  Identities=14%  Similarity=0.147  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019328          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (342)
Q Consensus       177 G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~  256 (342)
                      |..+|-.++ ..|.+|+..+|+.+-..++..+..    .+     .+....++-.+..+.+.+.++..|....|-++ -+
T Consensus        33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w~~v----ed-----AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~I-ar  101 (340)
T COG4007          33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHWKRV----ED-----AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGI-AR  101 (340)
T ss_pred             chHHHHHHH-HcCCcEEeecCCccccCHHHHHHH----Hh-----cCcEEecCchhhhhcceEEEEecccchhhHHH-HH
Confidence            567777764 669999999999765433322211    12     22333455667889999999999999888874 57


Q ss_pred             hHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328          257 ERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       257 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL  286 (342)
                      +.+.+++.|+++.||..-+.+   .|+.-|
T Consensus       102 ei~~hvpEgAVicnTCT~sp~---vLy~~L  128 (340)
T COG4007         102 EILEHVPEGAVICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             HHHhhCcCCcEecccccCchh---HHHHHh
Confidence            889999999999999987754   566666

>PLN02214 cinnamoyl-CoA reductase

Probab=91.44  E-value=0.62  Score=44.82  Aligned_cols=83  Identities=12%  Similarity=-0.016  Sum_probs=49.3

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.++++.|.|. |.||+.+++.| ..-|.+|.+.+|...................-...........+++++++.+|+|
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            467899999998 99999999998 4679999998886542111100000000000000000111234577888899998


Q ss_pred             EEcCC
Q 019328          241 SLHPV  245 (342)
Q Consensus       241 ~l~lp  245 (342)
                      +.+..
T Consensus        86 ih~A~   90 (342)
T PLN02214         86 FHTAS   90 (342)
T ss_pred             EEecC
Confidence            77764

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=91.41  E-value=0.78  Score=44.06  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.+|.|.|.|.||..+++.+ ++.|.+|++.++++.+
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence            478999999999999999985 8999999999887654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=91.32  E-value=0.52  Score=42.83  Aligned_cols=39  Identities=26%  Similarity=0.199  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .+.||++.|.|- |.||+.+|+.|+ ..|++|+..+|+..+
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~~   46 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPAK   46 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            578999999996 999999999984 679999999987643

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=91.25  E-value=0.63  Score=44.13  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=50.0

Q ss_pred             ccCCCEEEEEc---cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG---~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+.|++|+|+|   +|+.-++.++.| +.||++|..+.|..-...+...++.    ..   .+..+......+|+++++|
T Consensus       155 ~~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~l----~~---~~~~~~~~~~~e~~i~~~D  226 (316)
T COG0540         155 RLDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEEL----EE---KGGVVVEHDSDEEVIEEAD  226 (316)
T ss_pred             CcCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHHH----hh---cCceEEEecchhhhhccCC
Confidence            38999999999   799999999998 7999999999986422111111111    11   1111233455666999999


Q ss_pred             EEEEc
Q 019328          239 VISLH  243 (342)
Q Consensus       239 iV~l~  243 (342)
                      ++.+.
T Consensus       227 Vl~~l  231 (316)
T COG0540         227 VLYML  231 (316)
T ss_pred             EEEee
Confidence            99654

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=91.19  E-value=0.7  Score=43.33  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=31.1

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~  201 (342)
                      ++++.|+|.|..+++++-.| ...|+ +|.+++|+.++
T Consensus       122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~  158 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT  158 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence            46899999999999999997 57787 59999998754

>PRK12742 oxidoreductase; Provisional

Probab=91.18  E-value=1.4  Score=39.27  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=30.2

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      .+.||++-|.|- |.||+.+|+.| ...|++|+...+.
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~   39 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG   39 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence            467999999996 99999999998 5789998876543

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=91.15  E-value=0.71  Score=44.45  Aligned_cols=108  Identities=24%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcCCc-------EEEEEcCChhhH-HHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~g~-------~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (342)
                      +|+|+|. |.+|..+|..|+ ..+.       ++..+|...... .+.....    +.+.. ..........+..+.+++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~-~~~~~~~~~e~el~LiD~~~~~~~a~g~~~D----l~d~~~~~~~~~~~~~~~~~~~~~   75 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIA-RGRMLGKDQPIILHLLDIPPAMKVLEGVVME----LMDCAFPLLDGVVPTHDPAVAFTD   75 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHH-hccccCCCCccEEEEEecCCcccccceeEee----hhcccchhcCceeccCChHHHhCC
Confidence            5899999 999999999874 3222       588999854321 1110000    00000 000001111245678899


Q ss_pred             CCEEEEcC--CCCc-cccc-cc--C-------HhHHccC-CCCcEEEecCCCccCCHHH
Q 019328          237 ADVISLHP--VLDK-TTYH-LI--N-------KERLATM-KKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       237 sDiV~l~l--plt~-~t~~-li--~-------~~~l~~m-k~gailIN~sRG~~vd~~a  281 (342)
                      ||+|++..  |..+ +|+. ++  |       ...+... +|.+++|+++  .++|.-.
T Consensus        76 aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        76 VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            99999874  3322 2221 11  1       1234444 5788888876  4454443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=91.10  E-value=1.1  Score=43.22  Aligned_cols=95  Identities=18%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH----HHHhh--c
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E  236 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~  236 (342)
                      .|.+|.|.|.|.+|...++.+ +.+|++ |++.+++..+..  +..+++       ....-.....+.    .++..  .
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~a-k~~G~~~Vi~~~~~~~~~~--~~~~~G-------a~~~i~~~~~~~~~~i~~~~~~~g  245 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGA-ALAGASKIIAVDIDDRKLE--WAREFG-------ATHTVNSSGTDPVEAIRALTGGFG  245 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--HHHHcC-------CceEEcCCCcCHHHHHHHHhCCCC
Confidence            478999999999999999984 899985 988888765422  112221       100000011122    22222  3


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+-++.. +++   + ...+..++++..++.++-
T Consensus       246 ~d~vid~~g~-~~~---~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       246 ADVVIDAVGR-PET---Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCEEEECCCC-HHH---H-HHHHHHhccCCEEEEECC
Confidence            6888877652 222   1 345677888888888874

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.99  E-value=0.94  Score=41.46  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +++++-|.|. |.||+.+|+.+++.-|++|+..+|+.++
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~   45 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP   45 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence            4778999986 8999999999753335899999987654

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.99  E-value=1  Score=42.87  Aligned_cols=96  Identities=16%  Similarity=0.195  Sum_probs=59.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC-HHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~sDiV~l  242 (342)
                      .|.++.|.|.|.+|+.+++.+ +++|++|++.+++.+...  +...++       ....-.....+ ..+.-...|+++-
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~~--~~~~~g-------~~~vi~~~~~~~~~~~~~~~d~v~~  238 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKKE--DALKLG-------ADEFIATKDPEAMKKAAGSLDLIID  238 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHHH--HHHHcC-------CcEEecCcchhhhhhccCCceEEEE
Confidence            467999999999999999985 899999999988764321  111121       00000000001 1222356788888


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      +.+...     ...+.++.++++..+++++..
T Consensus       239 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~~  265 (337)
T cd05283         239 TVSASH-----DLDPYLSLLKPGGTLVLVGAP  265 (337)
T ss_pred             CCCCcc-----hHHHHHHHhcCCCEEEEEecc
Confidence            877421     125567888888888888653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=90.93  E-value=3.3  Score=34.61  Aligned_cols=112  Identities=16%  Similarity=-0.053  Sum_probs=67.3

Q ss_pred             CCCeEEEEeCCCCch------HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-CCccEEEecCC----cCccHHHHHH
Q 019328           13 NGKYRVVSTKPMPGT------RWINLLIEQDCRVEICTQKKTILSVEDIIALIG-DKCDGVIGQLT----EDWGETLFAA   81 (342)
Q Consensus        13 ~~~~kvl~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~----~~~~~~~~~~   81 (342)
                      |++++||+...-.+.      -....|+..|+++.+.-   ...+.+++.+.+. .++|++.++..    ...-+++++.
T Consensus         1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG---~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~   77 (137)
T PRK02261          1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG---VMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREK   77 (137)
T ss_pred             CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC---CCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHH
Confidence            456777765433331      13346778899987542   2357888887654 35888876532    2223455666


Q ss_pred             hhccCC-ce-EEEccccc-----CccChhHHHhCCceEEcCCCCCchhHHHHH
Q 019328           82 LSRAGG-KA-FSNMAVGY-----NNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (342)
Q Consensus        82 ~~~l~~-k~-i~~~g~G~-----d~id~~~a~~~gI~v~n~p~~~~~~vAE~a  127 (342)
                      +...++ +. |..-|.-.     ...+.+.+++.|+..+..|+...+.++++.
T Consensus        78 L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l  130 (137)
T PRK02261         78 CIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDL  130 (137)
T ss_pred             HHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence            655433 21 23333221     234567899999999999998777777664

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.92  E-value=0.33  Score=46.25  Aligned_cols=39  Identities=28%  Similarity=0.281  Sum_probs=34.5

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  202 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~  202 (342)
                      =.|.|++|.|+|.+|.++++-+ ++.|+ +|++.|-++++-
T Consensus       191 ~~GstvAVfGLG~VGLav~~Ga-ka~GAsrIIgvDiN~~Kf  230 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGA-KAAGASRIIGVDINPDKF  230 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhH-HhcCcccEEEEecCHHHH
Confidence            4689999999999999999984 88897 799999998753

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.83  E-value=1.8  Score=40.91  Aligned_cols=107  Identities=15%  Similarity=0.118  Sum_probs=69.7

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      |++++|||-=.=-..+++.| ...|++|..|.-.....               +.  .+.....+.++.++++|+|++-+
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~~--~~~~~~~~~~~~~~~~~~~i~p~   62 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------GF--TGAVKCELLELDLTTLDVVILPV   62 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------cc--ccceeecchhhhhccCCEEEECC
Confidence            68999999888888899998 57898877664321100               00  12223445666699999999999


Q ss_pred             CCCccccc----------ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          245 VLDKTTYH----------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       245 plt~~t~~----------li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      |.+.+.-.          -++++.++.|+++++ +-++.    +..++-++.++..|.-.
T Consensus        63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~v~  117 (287)
T TIGR02853        63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVKLI  117 (287)
T ss_pred             ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCeEE
Confidence            97766321          246889999997655 33443    34555556665555433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=90.60  E-value=1.2  Score=45.69  Aligned_cols=103  Identities=17%  Similarity=0.114  Sum_probs=65.6

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|++|+++|=   |+..++++..+ ..|| |+|....|..-...+.+.+.    ++.   .+.......++++.+++|
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~~----a~~---~G~~v~i~~d~~eav~~A  242 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVEK----MKK---NGFEVRIFSSIEEYLSQK  242 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHHH----HHH---cCCeEEEEcCHHHHhccC
Confidence            478999999998   58899999986 5798 99998887532111111111    111   112233457999999999


Q ss_pred             CEE--EE-------cCCCC-----ccc--ccccCHhHHccCCCCcEEEecC
Q 019328          238 DVI--SL-------HPVLD-----KTT--YHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       238 DiV--~l-------~lplt-----~~t--~~li~~~~l~~mk~gailIN~s  272 (342)
                      |+.  ..       .+...     .+.  .-.++++.++.+|++++|.-+.
T Consensus       243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            952  22       22211     011  2235889999999999987763

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.58  E-value=1.2  Score=43.02  Aligned_cols=97  Identities=16%  Similarity=0.164  Sum_probs=60.0

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~sDiV~  241 (342)
                      ..|.++.|.|.|.+|..+++.+ +..|++|++.+++.++... ....++.       ... .......+.++....|+++
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~A-k~~G~~vi~~~~~~~~~~~-~~~~~Ga-------~~~i~~~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSDKKREE-ALEHLGA-------DDYLVSSDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HHHhcCC-------cEEecCCChHHHHHhcCCCcEEE
Confidence            3578999999999999999984 8999999888876543221 1111221       000 0000011233334579998


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      -++....     .....++.++++..++.++.
T Consensus       250 d~~g~~~-----~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        250 DTVPVFH-----PLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ECCCchH-----HHHHHHHHhccCCEEEEECC
Confidence            8876321     12346778899999988874

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=90.56  E-value=1  Score=44.56  Aligned_cols=79  Identities=20%  Similarity=0.306  Sum_probs=49.5

Q ss_pred             ccCCCEEEEEcc-----C---hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       162 ~l~gktvGIiG~-----G---~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (342)
                      .+.|+||+|+|-     |   ++.++++..+ ..||++|.+..|..-...+...+......+..   +.......++++.
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~---G~~i~~~~d~~ea  259 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKAS---GGSFRQVNSMEEA  259 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHc---CCeEEEEcCHHHH
Confidence            478999999985     5   5668888876 58999999998863110111111000000111   1123345799999


Q ss_pred             hhcCCEEEEcC
Q 019328          234 LREADVISLHP  244 (342)
Q Consensus       234 l~~sDiV~l~l  244 (342)
                      ++++|+|..-.
T Consensus       260 v~~aDvVYtd~  270 (395)
T PRK07200        260 FKDADIVYPKS  270 (395)
T ss_pred             hCCCCEEEEcC
Confidence            99999998763

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=90.54  E-value=1.4  Score=43.84  Aligned_cols=116  Identities=18%  Similarity=0.204  Sum_probs=67.3

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC--
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP--  244 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l--  244 (342)
                      ++.|||+|.+|.++|+.| +..|.+|.++|............    .++..  .+.....-.+ .+.+..+|+|+..-  
T Consensus         1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~--~gi~~~~g~~-~~~~~~~d~vv~sp~i   72 (433)
T TIGR01087         1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLN--EGSVLHTGLH-LEDLNNADLVVKSPGI   72 (433)
T ss_pred             CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhc--cCcEEEecCc-hHHhccCCEEEECCCC
Confidence            478999999999999997 68999999999765432111000    00000  0111111123 34567899987763  


Q ss_pred             CC-Ccccc-------cccCHh-HH-ccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          245 VL-DKTTY-------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       245 pl-t~~t~-------~li~~~-~l-~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      |. +|+-.       .++.+. .+ ..++...+-|.=+.|..--..-+...|+...
T Consensus        73 ~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        73 PPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            32 22211       133332 22 3344445666667898888888888887643

>cd08293 PTGR2 Prostaglandin reductase

Probab=90.52  E-value=1.4  Score=41.90  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=59.0

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-----hcC
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~s  237 (342)
                      |.+|.|.|. |.+|+..++.+ +.+|+ +|++.+++.++... ..+.++       ..........++.+.+     ...
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlA-k~~G~~~Vi~~~~s~~~~~~-~~~~lG-------a~~vi~~~~~~~~~~i~~~~~~gv  225 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIG-RLLGCSRVVGICGSDEKCQL-LKSELG-------FDAAINYKTDNVAERLRELCPEGV  225 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHH-HHHhcC-------CcEEEECCCCCHHHHHHHHCCCCc
Confidence            489999998 99999999984 89999 89998877653211 111121       1111011112333322     247


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+-++.. +   . + .+.++.++++..+|.++.
T Consensus       226 d~vid~~g~-~---~-~-~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         226 DVYFDNVGG-E---I-S-DTVISQMNENSHIILCGQ  255 (345)
T ss_pred             eEEEECCCc-H---H-H-HHHHHHhccCCEEEEEee
Confidence            888877662 1   1 2 567888999999998763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK06114 short chain dehydrogenase; Provisional

Probab=90.43  E-value=0.62  Score=42.40  Aligned_cols=38  Identities=29%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+.||++-|.|- |.||+.+|++| ...|++|+..+++..
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD   43 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            578999999986 79999999998 578999999988654

>PRK08324 short chain dehydrogenase; Validated

Probab=90.42  E-value=0.72  Score=48.88  Aligned_cols=40  Identities=30%  Similarity=0.373  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ..+.||++-|.| .|.||+.+|+.| ...|++|+..+++...
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            467899999999 599999999998 5789999999998754

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=90.36  E-value=6  Score=33.40  Aligned_cols=118  Identities=16%  Similarity=0.029  Sum_probs=76.8

Q ss_pred             CCCeEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHh-cCCccEEEecCC----cCccHHHHHH
Q 019328           13 NGKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALI-GDKCDGVIGQLT----EDWGETLFAA   81 (342)
Q Consensus        13 ~~~~kvl~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~----~~~~~~~~~~   81 (342)
                      ..++||++.+.-.+      .-....|++.|+++....   ...+++|+.+.. ..++|++.+++.    ...-+.+.++
T Consensus        10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g---~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~   86 (143)
T COG2185          10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLG---LFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEA   86 (143)
T ss_pred             CCCceEEEeccCccccccchHHHHHHHHhCCceEEecC---CcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHH
Confidence            35788887654222      223467888899886432   234677777554 556898876542    2334567778


Q ss_pred             hhccCCceEEEcccccC-ccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHH
Q 019328           82 LSRAGGKAFSNMAVGYN-NVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA  133 (342)
Q Consensus        82 ~~~l~~k~i~~~g~G~d-~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~  133 (342)
                      |...|...|....-|.= -=|....++.|+.=.-.|+-+...+++..+..+-.
T Consensus        87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~  139 (143)
T COG2185          87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA  139 (143)
T ss_pred             HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence            88888877764444432 23667789999999999998777776666655543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.30  E-value=0.9  Score=45.48  Aligned_cols=114  Identities=21%  Similarity=0.258  Sum_probs=65.6

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc--ccC---CHHHHhhcCCEEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RAS---SMDEVLREADVIS  241 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~l~ell~~sDiV~  241 (342)
                      +|.|||+|..|.+.|+.| ...|.+|.++|+...+.......    .+...+   ....  ...   .+.+.+.+.|.|+
T Consensus         2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~g~~~~~~~~~~~~~~~d~vv   73 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEG---ITVKLGKPLELESFQPWLDQPDLVV   73 (459)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcC---CEEEECCccchhhhhHHhhcCCEEE
Confidence            689999999999999987 68899999999876443211000    011111   1111  011   1235678899988


Q ss_pred             EcCCCCcccc----------cccCHh-H-HccCCC-CcEEEecCCCccCCHHHHHHHHHc
Q 019328          242 LHPVLDKTTY----------HLINKE-R-LATMKK-EAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~----------~li~~~-~-l~~mk~-gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      ......++..          .++.+- . ...+++ ..+-|--+.|..--..-|...|+.
T Consensus        74 ~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~  133 (459)
T PRK02705         74 VSPGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA  133 (459)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8533323211          123322 2 233433 345555567887777777777875

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.27  E-value=1.1  Score=43.71  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .|.+|.|.|.|.+|...++. ++++|++|++.+++.+
T Consensus       178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~  213 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSE  213 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChH
Confidence            58899999999999999998 4899999999887654

>CHL00194 ycf39 Ycf39; Provisional

Probab=90.27  E-value=0.65  Score=44.04  Aligned_cols=72  Identities=13%  Similarity=0.066  Sum_probs=45.0

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|.|.| .|.||+.+++.| ..-|.+|.+.+|+..+...  ....+.....     .......++.++++.+|+|+.+.
T Consensus         1 MkIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~~--l~~~~v~~v~-----~Dl~d~~~l~~al~g~d~Vi~~~   72 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKASF--LKEWGAELVY-----GDLSLPETLPPSFKGVTAIIDAS   72 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhhh--HhhcCCEEEE-----CCCCCHHHHHHHHCCCCEEEECC
Confidence            3789999 599999999997 4679999999987543210  0000000000     00112245778899999988765


Q ss_pred             C
Q 019328          245 V  245 (342)
Q Consensus       245 p  245 (342)
                      +
T Consensus        73 ~   73 (317)
T CHL00194         73 T   73 (317)
T ss_pred             C
Confidence            4

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.16  E-value=1.8  Score=41.17  Aligned_cols=95  Identities=14%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDiV  240 (342)
                      .|.+|.|.|.|.+|+.+++.+ +++|.+|++.+++.+..  ++..+++.       ...-.....++.+.+   ...|++
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~~~--~~~~~~g~-------~~~i~~~~~~~~~~~~~~~~~d~v  232 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSDKA--DLARKLGA-------HHYIDTSKEDVAEALQELGGAKLI  232 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChHHH--HHHHHcCC-------cEEecCCCccHHHHHHhcCCCCEE
Confidence            478999999999999999985 89999999998875432  11122221       000000111222211   346888


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +-+.....     .-...++.++++..+++++.
T Consensus       233 i~~~g~~~-----~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         233 LATAPNAK-----AISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             EECCCchH-----HHHHHHHHcccCCEEEEEec
Confidence            76643111     22446778888888888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.10  E-value=0.82  Score=41.12  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ++.++++.|.|. |.||+.+++.| ...|++|++.+|+...
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            467899999996 89999999998 4679999999998653

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=90.09  E-value=1.2  Score=41.94  Aligned_cols=98  Identities=13%  Similarity=0.096  Sum_probs=60.1

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHH--HH--hhcC
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREA  237 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~s  237 (342)
                      ..|.+|.|+|.|.+|+.+++.+ ++.|++ |++.+++.+...  +..+++.       .........++.  ..  -...
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~--~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~v  227 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKLE--LAKKLGA-------TETVDPSREDPEAQKEDNPYGF  227 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHHHhCC-------eEEecCCCCCHHHHHHhcCCCC
Confidence            3578999999999999999985 899998 888888765421  1111110       000000001111  11  2457


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |+++-+++...     ...+.++.|+++..+++++...
T Consensus       228 d~v~~~~~~~~-----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         228 DVVIEATGVPK-----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             cEEEECCCChH-----HHHHHHHHHhcCCEEEEEecCC
Confidence            99988775221     2345678888999999887654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=89.95  E-value=1.3  Score=42.93  Aligned_cols=33  Identities=15%  Similarity=0.390  Sum_probs=25.6

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      .+|+|+| .|.+|+.+++.|...-.+++.++..+
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s   37 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAAS   37 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence            6899998 89999999999853334688877433

>PRK05866 short chain dehydrogenase; Provisional

Probab=89.94  E-value=0.91  Score=42.64  Aligned_cols=41  Identities=20%  Similarity=0.156  Sum_probs=35.4

Q ss_pred             ccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       160 g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +..+.|+++-|.|. |.||+.+|+.|+ .-|++|+..+|+.+.
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~~   76 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARREDL   76 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            45789999999997 999999999984 679999999998643

>PRK06841 short chain dehydrogenase; Provisional

Probab=89.92  E-value=2.4  Score=38.33  Aligned_cols=38  Identities=24%  Similarity=0.286  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ++.||++-|.|. |.||..+|+.|+ ..|++|+..+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~-~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFA-AKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            588999999996 999999999984 67999999998754

>PRK06172 short chain dehydrogenase; Provisional

Probab=89.79  E-value=0.78  Score=41.53  Aligned_cols=39  Identities=23%  Similarity=0.195  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .+.||++-|.|. |.||+.+|++|+ .-|++|+..+|+.+.
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            578999999997 899999999984 679999999998653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=89.76  E-value=0.91  Score=46.95  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      -.|+++.|.|. |.||+.+++.| ...|++|.+++|+...
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek  116 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR  116 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            46889999997 99999999998 4779999999988654

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.66  E-value=1.2  Score=44.47  Aligned_cols=114  Identities=19%  Similarity=0.195  Sum_probs=64.5

Q ss_pred             cCC-CEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc-ccCCHHHHhhcCCE
Q 019328          163 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  239 (342)
Q Consensus       163 l~g-ktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDi  239 (342)
                      +.| +++.|+|+|..|.+.++.|.+.-| ++|.++|..........       ++.    +.... ...+. +.+.++|+
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~-------l~~----g~~~~~g~~~~-~~~~~~d~   71 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQ-------LPE----DVELHSGGWNL-EWLLEADL   71 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHH-------hhc----CCEEEeCCCCh-HHhccCCE
Confidence            445 789999999999999999754444 89999997643211110       110    11111 11132 34578998


Q ss_pred             EEEcC--CC-Ccccc-------cccCH-hHH-ccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          240 ISLHP--VL-DKTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       240 V~l~l--pl-t~~t~-------~li~~-~~l-~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      |+..-  |. +|+-+       .++.+ +.+ ..++...+-|-=+-|..--..-|...|+.
T Consensus        72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            87763  32 22211       13333 232 23444445555567887777777777775

>PRK08328 hypothetical protein; Provisional

Probab=89.61  E-value=0.46  Score=43.37  Aligned_cols=107  Identities=23%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHH---HH---Hhhhhh---------hhcc-CCCCCcc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE---KF---VTAYGQ---------FLKA-NGEQPVT  223 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~---~~---~~~~~~---------~~~~-~~~~~~~  223 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-....   .+   .+..+.         .++. .....+.
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~  101 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIE  101 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEE
Confidence            4699999999999999999999985 6676 67788855311000   00   000000         0000 0000000


Q ss_pred             ----ccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          224 ----WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       224 ----~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                          .....+++++++++|+|+.|+.. .+++.++++-..+   .+.-+|+.+
T Consensus       102 ~~~~~~~~~~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~---~~ip~i~g~  150 (231)
T PRK08328        102 TFVGRLSEENIDEVLKGVDVIVDCLDN-FETRYLLDDYAHK---KGIPLVHGA  150 (231)
T ss_pred             EEeccCCHHHHHHHHhcCCEEEECCCC-HHHHHHHHHHHHH---cCCCEEEEe
Confidence                00123466788999999998874 6678777654333   344466544

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=89.57  E-value=0.85  Score=43.89  Aligned_cols=101  Identities=24%  Similarity=0.259  Sum_probs=56.0

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcC-------CcEEEEEcCChhhH-HHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGF-------KMNLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~-------g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (342)
                      +|+|+|. |.+|..++..|. ..       +.++..+|+..... .......    +.+.. ..........++.+.++.
T Consensus         4 kV~I~GAaG~VG~~la~~L~-~~~~~~~~~~~el~L~D~~~~~~~~~g~~~D----l~d~~~~~~~~~~~~~~~~~~l~~   78 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIA-KGDVFGPDQPVILHLLDIPPALKALEGVVME----LQDCAFPLLKSVVATTDPEEAFKD   78 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHH-hCcccCCCCCcEEEEEEcCCccccccceeee----hhhccccccCCceecCCHHHHhCC
Confidence            6999999 999999999874 32       24899999854321 1110000    00000 000011113567788999


Q ss_pred             CCEEEEcCCC--Cc-cccc-cc--CH-------hHHccC-CCCcEEEecC
Q 019328          237 ADVISLHPVL--DK-TTYH-LI--NK-------ERLATM-KKEAILVNCS  272 (342)
Q Consensus       237 sDiV~l~lpl--t~-~t~~-li--~~-------~~l~~m-k~gailIN~s  272 (342)
                      ||+|+.+.-.  .+ +++. ++  |.       ..+... +|++++|.++
T Consensus        79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (325)
T cd01336          79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG  128 (325)
T ss_pred             CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            9999887432  22 2221 11  11       233444 5788898887

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=89.57  E-value=1.2  Score=42.87  Aligned_cols=107  Identities=18%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcCCc-------EEEEEcCChhh-HHHHHHhhhhhhhccCCCCCc-cccccCCHHHHhhc
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLRE  236 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~g~-------~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~  236 (342)
                      +|+|||. |.+|..+|-.|. ..|.       ++..+|..... ........    +.+...... ...-..+..+.+++
T Consensus         5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D----l~~~~~~~~~~~~i~~~~~~~~~d   79 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAME----LEDCAFPLLAGVVATTDPEEAFKD   79 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHH----HhhccccccCCcEEecChHHHhCC
Confidence            7999998 999999998763 3343       79999985421 01111110    011110000 01111355678899


Q ss_pred             CCEEEEcCC--CCc-cccccc---CH-------hHHccCCC-CcEEEecCCCccCCHH
Q 019328          237 ADVISLHPV--LDK-TTYHLI---NK-------ERLATMKK-EAILVNCSRGPVIDEV  280 (342)
Q Consensus       237 sDiV~l~lp--lt~-~t~~li---~~-------~~l~~mk~-gailIN~sRG~~vd~~  280 (342)
                      ||+|+++.-  ..+ +||.-+   |.       ..+....| .+++|.++  .++|.-
T Consensus        80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~  135 (323)
T TIGR01759        80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTN  135 (323)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHH
Confidence            999998843  222 233221   11       12333444 88999886  444443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.55  E-value=1.5  Score=42.48  Aligned_cols=93  Identities=20%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccC-C----HHHHhh--cCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-S----MDEVLR--EAD  238 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~ell~--~sD  238 (342)
                      ++.|+|.|.||...++.+ +.+|+ +|++.|+++....-+  .++.      + ......... +    ..++..  .+|
T Consensus       171 ~V~V~GaGpIGLla~~~a-~~~Ga~~Viv~d~~~~Rl~~A--~~~~------g-~~~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         171 TVVVVGAGPIGLLAIALA-KLLGASVVIVVDRSPERLELA--KEAG------G-ADVVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHHHHH--HHhC------C-CeEeecCccccHHHHHHHHhCCCCCC
Confidence            999999999999998874 78886 688888887643211  1100      0 000000001 1    112222  489


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      +++-|.. ++.    .-...++..+++..++.++-.
T Consensus       241 ~vie~~G-~~~----~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         241 VVIEAVG-SPP----ALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             EEEECCC-CHH----HHHHHHHHhcCCCEEEEEecc
Confidence            9999988 332    224577888999998888754

>PLN02740 Alcohol dehydrogenase-like

Probab=89.54  E-value=1.8  Score=42.16  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=32.6

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~  201 (342)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.+++..+
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~a-k~~G~~~Vi~~~~~~~r  235 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGA-RARGASKIIGVDINPEK  235 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCCcEEEEcCChHH
Confidence            3588999999999999999985 89999 69999887654

>PRK08374 homoserine dehydrogenase; Provisional

Probab=89.51  E-value=0.92  Score=43.86  Aligned_cols=130  Identities=16%  Similarity=0.241  Sum_probs=64.0

Q ss_pred             CEEEEEccChHHHHHHHHHHh-------cCC--cEEEEE-cCChhh------HHHHHHhhhhhhhccCCC-CCcc---cc
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-------GFK--MNLIYY-DLYQAT------RLEKFVTAYGQFLKANGE-QPVT---WK  225 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-------a~g--~~V~~~-d~~~~~------~~~~~~~~~~~~~~~~~~-~~~~---~~  225 (342)
                      .+|+|+|+|++|+.+++.|.+       .+|  .+|.+. |++...      ..++.. ++   .+..+. ....   ..
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~-~~---~~~~~~~~~~~~~~~~   78 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAK-EV---KENFGKLSNWGNDYEV   78 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHH-Hh---hhccCchhhccccccc
Confidence            489999999999999987632       145  676644 432110      000000 00   000000 0000   00


Q ss_pred             ccCCHHHHh--hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCc-cEEEeecCCC
Q 019328          226 RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM-FRVGLDVFED  301 (342)
Q Consensus       226 ~~~~l~ell--~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i-~gaalDV~~~  301 (342)
                      ...++++++  ..+|+|+-+.+.. ..    ..-..+.++.|.-+|-..-|.+- ..+.|.+..++... ..+.--|--.
T Consensus        79 ~~~~~~ell~~~~~DVvVd~t~~~-~a----~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~G  153 (336)
T PRK08374         79 YNFSPEEIVEEIDADIVVDVTNDK-NA----HEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAG  153 (336)
T ss_pred             cCCCHHHHHhcCCCCEEEECCCcH-HH----HHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEecccccc
Confidence            012677887  4799999777522 11    12233445666666655555432 45566665554332 2222334444


Q ss_pred             CCC
Q 019328          302 EPY  304 (342)
Q Consensus       302 EP~  304 (342)
                      -|.
T Consensus       154 iPi  156 (336)
T PRK08374        154 TPI  156 (336)
T ss_pred             CCc
Confidence            443

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.42  E-value=0.52  Score=47.48  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=65.1

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      -.||+|+|+|+|.-|.++|+.| +. |++|+++|........ . ...    ..   ..  ... ....+.+.++|+|+.
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~~-~-~~~----~~---~~--~~~-~~~~~~~~~~d~vV~   69 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRDI-F-EEL----YS---KN--AIA-ALSDSRWQNLDKIVL   69 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchHH-H-Hhh----hc---Cc--eec-cCChhHhhCCCEEEE
Confidence            3488999999999999999998 45 9999999954332111 0 000    00   00  000 112345678999888


Q ss_pred             cC--CCC-ccc-------ccccCHhHH--ccCCC-CcEEEecCCCccCCHHHHHHHHHc
Q 019328          243 HP--VLD-KTT-------YHLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~l--plt-~~t-------~~li~~~~l--~~mk~-gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      .-  |.+ |.-       ..++++-.|  ..+++ ..+=|-=+.|..--..-|...|+.
T Consensus        70 SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         70 SPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             CCCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            73  322 211       123444333  33433 234444467888777777888876

>PRK10537 voltage-gated potassium channel; Provisional

Probab=89.41  E-value=1.2  Score=44.07  Aligned_cols=90  Identities=8%  Similarity=-0.080  Sum_probs=52.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV  240 (342)
                      ..++-|+|+|.+|+.+++.| +..|.++.+.++....  ....         .+. ..-.....+.+.+    +++|+.|
T Consensus       240 k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~--~~~~---------~g~-~vI~GD~td~e~L~~AgI~~A~aV  306 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLE--HRLP---------DDA-DLIPGDSSDSAVLKKAGAARARAI  306 (393)
T ss_pred             CCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhh--hhcc---------CCC-cEEEeCCCCHHHHHhcCcccCCEE
Confidence            56799999999999999998 5778888888865321  1110         111 1101111222222    4688999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEE
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailI  269 (342)
                      +++.+.+.++..  -....+.+.|+..+|
T Consensus       307 I~~t~dD~~Nl~--ivL~ar~l~p~~kII  333 (393)
T PRK10537        307 LALRDNDADNAF--VVLAAKEMSSDVKTV  333 (393)
T ss_pred             EEcCCChHHHHH--HHHHHHHhCCCCcEE
Confidence            988885554433  233455565654443

>PTZ00188 adrenodoxin reductase; Provisional

Probab=89.40  E-value=2.5  Score=43.11  Aligned_cols=85  Identities=13%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh-------------HHHHHHhhhhhhhccCCCC---Cccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQ---PVTW  224 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~~~  224 (342)
                      ..-..++|+|||-|.-|-..|+.|++..|.+|..|++.+.+             ........+...+...+..   ....
T Consensus        35 ~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V  114 (506)
T PTZ00188         35 NEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV  114 (506)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence            34568999999999999999997544569999999877542             0011111111111111100   0111


Q ss_pred             cccCCHHHHhhcCCEEEEcCC
Q 019328          225 KRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       225 ~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ....+++++.++.|.|++++-
T Consensus       115 G~Dvt~eeL~~~YDAVIlAtG  135 (506)
T PTZ00188        115 GVDLKMEELRNHYNCVIFCCG  135 (506)
T ss_pred             cCccCHHHHHhcCCEEEEEcC
Confidence            123478999999999999864

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.30  E-value=1.6  Score=41.99  Aligned_cols=70  Identities=20%  Similarity=0.343  Sum_probs=47.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcC---CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC--CE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--Di  239 (342)
                      -+.||+|.|.|++-+++.| ...   +..|. ++||+... ..+|.+.       .+..  ....+.+.|||++..  |+
T Consensus         7 ir~Gi~g~g~ia~~f~~al-~~~p~s~~~Ivava~~s~~~-A~~fAq~-------~~~~--~~k~y~syEeLakd~~vDv   75 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRAL-HTLPESNHQIVAVADPSLER-AKEFAQR-------HNIP--NPKAYGSYEELAKDPEVDV   75 (351)
T ss_pred             eEEEEeehhHHHHHHHHHh-ccCcccCcEEEEEecccHHH-HHHHHHh-------cCCC--CCccccCHHHHhcCCCcCE
Confidence            4799999999999999987 433   56665 55775442 3333322       2221  223467999999776  99


Q ss_pred             EEEcCCC
Q 019328          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~lpl  246 (342)
                      |.+..|.
T Consensus        76 Vyi~~~~   82 (351)
T KOG2741|consen   76 VYISTPN   82 (351)
T ss_pred             EEeCCCC
Confidence            9999884

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=89.28  E-value=1.5  Score=41.56  Aligned_cols=106  Identities=16%  Similarity=0.165  Sum_probs=58.3

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh-----H-----HHH---HH-hhhhhhhccCCCCCcccc----cc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-----R-----LEK---FV-TAYGQFLKANGEQPVTWK----RA  227 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~-----~-----~~~---~~-~~~~~~~~~~~~~~~~~~----~~  227 (342)
                      +|.|||.|.+|.++++.|+ ..|. ++...|...-.     +     .+.   .. +.....+.. ........    ..
T Consensus         1 kVlVVGaGGlG~eilknLa-l~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~-~np~v~I~~~~~~i   78 (291)
T cd01488           1 KILVIGAGGLGCELLKNLA-LSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVND-RVPGVNVTPHFGKI   78 (291)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHH-HCCCCEEEEEeccc
Confidence            5899999999999999985 4454 67777754210     0     000   00 000000100 00001110    11


Q ss_pred             -CCHHHHhhcCCEEEEcCCCCcccccccCHhHHccC-----CCCcEEEecCCCc
Q 019328          228 -SSMDEVLREADVISLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP  275 (342)
Q Consensus       228 -~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~m-----k~gailIN~sRG~  275 (342)
                       ..-++.+++.|+|+.++. +.++|..+++...+..     +.+.-||..+..+
T Consensus        79 ~~~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G  131 (291)
T cd01488          79 QDKDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG  131 (291)
T ss_pred             CchhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence             122577899999999887 4678888887655543     2345577765543

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=89.28  E-value=2.8  Score=42.06  Aligned_cols=113  Identities=17%  Similarity=0.116  Sum_probs=63.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhc--CC------cEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhh
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a--~g------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~  235 (342)
                      .+|+|||. |.+|..+|-.|+..  ||      -+++.+|.+.+.....-.+     +.+.. ..........+-.+.++
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD-----L~daa~~~~~~v~i~~~~ye~~k  175 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME-----LEDSLYPLLREVSIGIDPYEVFQ  175 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH-----HHHhhhhhcCceEEecCCHHHhC
Confidence            48999999 99999999887532  22      3788899887643221111     11111 00001111134457789


Q ss_pred             cCCEEEEcCC--CCc-cccc-cc--CH-------hHHcc-CCCCcEEEecCCCccCCHHHHHHH
Q 019328          236 EADVISLHPV--LDK-TTYH-LI--NK-------ERLAT-MKKEAILVNCSRGPVIDEVALVEH  285 (342)
Q Consensus       236 ~sDiV~l~lp--lt~-~t~~-li--~~-------~~l~~-mk~gailIN~sRG~~vd~~aL~~a  285 (342)
                      +||+|++..-  ..+ ++|. ++  |.       ..+.. -+|++++|.++  ..+|.-..+-.
T Consensus       176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~  237 (444)
T PLN00112        176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICL  237 (444)
T ss_pred             cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHH
Confidence            9999999843  322 1221 11  11       23444 47889999887  55555554443

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=89.24  E-value=1.2  Score=42.86  Aligned_cols=90  Identities=16%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhc--CC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEG--FK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a--~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      +++|+|+|. |.+|+.+.+.|+ .  +. .++.+..+..... ..        +.-.+ ....... .+. +.++.+|+|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~~g-~~--------l~~~g-~~i~v~d-~~~-~~~~~vDvV   67 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAG-KE--------LSFKG-KELKVED-LTT-FDFSGVDIA   67 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEccccCC-Ce--------eeeCC-ceeEEee-CCH-HHHcCCCEE
Confidence            468999997 999999999984 5  32 2445553332110 00        00001 1111111 122 234789999


Q ss_pred             EEcCCCCcccccccCHhHHcc-CCCCcEEEecCC
Q 019328          241 SLHPVLDKTTYHLINKERLAT-MKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~-mk~gailIN~sR  273 (342)
                      ++|+|.. .++     +...+ ++.|+++|+.|.
T Consensus        68 f~A~g~g-~s~-----~~~~~~~~~G~~VIDlS~   95 (334)
T PRK14874         68 LFSAGGS-VSK-----KYAPKAAAAGAVVIDNSS   95 (334)
T ss_pred             EECCChH-HHH-----HHHHHHHhCCCEEEECCc
Confidence            9999843 222     22222 357889998773

>PRK06196 oxidoreductase; Provisional

Probab=89.21  E-value=0.97  Score=42.77  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ..+.||++-|.|. |.||+.+|+.|+ ..|++|++.+|+...
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R~~~~   62 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPDV   62 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            3578999999998 899999999984 679999999987653

>PLN02427 UDP-apiose/xylose synthase

Probab=89.16  E-value=0.86  Score=44.47  Aligned_cols=41  Identities=29%  Similarity=0.436  Sum_probs=33.8

Q ss_pred             cccccCCCEEEEEcc-ChHHHHHHHHHHhcC-CcEEEEEcCChh
Q 019328          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA  200 (342)
Q Consensus       159 ~g~~l~gktvGIiG~-G~IG~~vA~~l~~a~-g~~V~~~d~~~~  200 (342)
                      .|+.++.++|.|.|- |-||+.+++.|. .- |.+|+++|++..
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~-~~~g~~V~~l~r~~~   50 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLM-TETPHKVLALDVYND   50 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHH-hcCCCEEEEEecCch
Confidence            466788889999995 999999999984 44 589999997653

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=89.13  E-value=1.1  Score=48.50  Aligned_cols=112  Identities=24%  Similarity=0.317  Sum_probs=67.2

Q ss_pred             CEEEEEccChHHHHH-HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~v-A~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +++.|+|+|.+|.+. |+.| ...|.+|.++|....+....        ++..+   ..... ....+.+..+|+|+..-
T Consensus         5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~g---i~~~~-g~~~~~~~~~d~vV~Sp   71 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKG---ARFFL-GHQEEHVPEDAVVVYSS   71 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCC---CEEeC-CCCHHHcCCCCEEEECC
Confidence            469999999999998 9987 68999999999765432221        11111   11111 11235567899998773


Q ss_pred             CCCcccc----------cccCHhHH-cc-CCC-CcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          245 VLDKTTY----------HLINKERL-AT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       245 plt~~t~----------~li~~~~l-~~-mk~-gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      --.+++.          .++++-.+ .. ++. ..+-|-=+.|..=-..-+...|++..
T Consensus        72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g  130 (809)
T PRK14573         72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK  130 (809)
T ss_pred             CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            2222211          23333322 23 332 34555556788877777788887643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=89.07  E-value=1.4  Score=46.45  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=32.2

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      ..|++|.|||-|..|...|..| ...|.+|.+|++..
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L-~~~G~~Vtv~e~~~  343 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADIL-ARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHH-HHcCCcEEEEeCCC
Confidence            4699999999999999999997 57899999998765

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=89.02  E-value=0.74  Score=44.56  Aligned_cols=42  Identities=26%  Similarity=0.479  Sum_probs=29.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHH
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFV  207 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~  207 (342)
                      .+|||+|+|+||+..++.+...-+.++.+ +|+......-.+.
T Consensus         6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~l   48 (338)
T PLN02358          6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYM   48 (338)
T ss_pred             eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHh
Confidence            48999999999999999864334678776 5666554433343

>PRK08265 short chain dehydrogenase; Provisional

Probab=88.99  E-value=1.4  Score=40.24  Aligned_cols=38  Identities=29%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+.||++-|.|- |.||+.+|+.|+ ..|++|+..+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALV-AAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            478999999997 999999999984 78999999998764

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=88.98  E-value=1.9  Score=41.13  Aligned_cols=94  Identities=21%  Similarity=0.211  Sum_probs=55.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH---Hhh--cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---VLR--EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---ll~--~s  237 (342)
                      .|++|.|.|.|.+|...++.+ +.+|.+ |++.+++..+..  +...++.       ...-.....+.++   +..  ..
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~~--~~~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEKLA--LAKSLGA-------MQTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHHH--HHHHcCC-------ceEecCcccCHHHHHHHhcCCCC
Confidence            478999999999999999985 899997 678887765432  1122211       0000000111222   221  24


Q ss_pred             C-EEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          238 D-VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       238 D-iV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      | +++-++.. +.+    -.+.++.++++..++.++
T Consensus       230 d~~v~d~~G~-~~~----~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        230 DQLILETAGV-PQT----VELAIEIAGPRAQLALVG  260 (347)
T ss_pred             CeEEEECCCC-HHH----HHHHHHHhhcCCEEEEEc
Confidence            5 66666552 211    244678889999998886

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=88.96  E-value=2.3  Score=40.09  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~sDiV~  241 (342)
                      -.|.+|.|+|.|.+|+.+++.+ +++|.+|++.+++......  ...++       ..........+. ...-...|+++
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~~~--~~~~g-------~~~~~~~~~~~~~~~~~~~~d~vi  230 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKREL--ARKLG-------ADEVVDSGAELDEQAAAGGADVIL  230 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHhC-------CcEEeccCCcchHHhccCCCCEEE
Confidence            3467999999999999998885 8999999999887654211  11111       000000000011 11123578888


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      -++....     ...+.++.|+++..+|+++.
T Consensus       231 ~~~~~~~-----~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         231 VTVVSGA-----AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             ECCCcHH-----HHHHHHHhcccCCEEEEECC
Confidence            7765222     23556888999999998864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=88.95  E-value=0.87  Score=43.78  Aligned_cols=112  Identities=19%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHh-cCCc-----EEEEEcCChhhH-HHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~-a~g~-----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (342)
                      ++|+|||. |.+|..+|-.|.. .+--     ++..+|...... .......    +.+.. ..........+..+.+++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D----l~~~~~~~~~~~~i~~~~~~~~~d   78 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME----LEDCAFPLLAEIVITDDPNVAFKD   78 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh----hhhccccccCceEEecCcHHHhCC
Confidence            48999999 9999999988642 2222     789999853220 1110000    01100 000001112355678899


Q ss_pred             CCEEEEcCC--CCc-ccccc-c--CH-------hHHccCC-CCcEEEecCCCccCCHHHHH
Q 019328          237 ADVISLHPV--LDK-TTYHL-I--NK-------ERLATMK-KEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       237 sDiV~l~lp--lt~-~t~~l-i--~~-------~~l~~mk-~gailIN~sRG~~vd~~aL~  283 (342)
                      ||+|+++.-  ..+ +||.- +  |.       ..+.... |.+++|+++  ..+|.-.-+
T Consensus        79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  137 (322)
T cd01338          79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI  137 (322)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence            999999843  222 23221 1  11       2233344 588999987  555554433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=88.85  E-value=2.7  Score=40.12  Aligned_cols=95  Identities=18%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH----HHHhh--c
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E  236 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~  236 (342)
                      .|.+|.|.|.|.+|+.+++.+ +..|+ +|++.+++..+..  +...++.       ...-.....++    .++..  .
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~~--~~~~~ga-------~~~i~~~~~~~~~~l~~~~~~~~  241 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARRE--LAEELGA-------TIVLDPTEVDVVAEVRKLTGGGG  241 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHhCC-------CEEECCCccCHHHHHHHHhCCCC
Confidence            578999999999999999985 89999 8888887765421  1111211       00000011122    22332  3


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+++-+.....     .-...++.++++..++.++.
T Consensus       242 ~d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         242 VDVSFDCAGVQA-----TLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCEEEECCCCHH-----HHHHHHHhccCCCEEEEEcc
Confidence            899988875322     12456788899999998865

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=88.84  E-value=2.1  Score=40.45  Aligned_cols=95  Identities=18%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc-CCHHHHhh-----c
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~-----~  236 (342)
                      .|.+|.|.| -|.+|+.+++.+ +.+|++|++.+++.++.  ++..+++       ......... .++.+.+.     .
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~--~~~~~lG-------a~~vi~~~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKV--AYLKKLG-------FDVAFNYKTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHHcC-------CCEEEeccccccHHHHHHHhCCCC
Confidence            478999999 599999999985 89999999888776542  1112222       100000011 13333322     3


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .|+++-++.. +   . + ...++.++++..+++.+..
T Consensus       208 vdvv~d~~G~-~---~-~-~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       208 YDCYFDNVGG-E---F-S-NTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             eEEEEECCCH-H---H-H-HHHHHHhCcCcEEEEecch
Confidence            6888877652 2   1 2 5678889999999988753

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=88.78  E-value=1.2  Score=43.89  Aligned_cols=65  Identities=15%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             cCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH
Q 019328          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (342)
Q Consensus       163 l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (342)
                      ..|++|+|+|+.          .-...+++.| ...|++|.+|||......                 ..+.....++++
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~-----------------~~~~~~~~~~~~  355 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS-----------------FFNSRLERDLAT  355 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh-----------------hcCCeeeCCHHH
Confidence            478999999994          4567899997 689999999999854311                 012334679999


Q ss_pred             HhhcCCEEEEcCC
Q 019328          233 VLREADVISLHPV  245 (342)
Q Consensus       233 ll~~sDiV~l~lp  245 (342)
                      .++.||.|++..-
T Consensus       356 ~~~~~~~~~~~~~  368 (388)
T PRK15057        356 FKQQADVIISNRM  368 (388)
T ss_pred             HHHhCCEEEEcCC
Confidence            9999999998754

>PRK12747 short chain dehydrogenase; Provisional

Probab=88.70  E-value=2.1  Score=38.72  Aligned_cols=34  Identities=29%  Similarity=0.209  Sum_probs=28.6

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcC
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL  197 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~  197 (342)
                      +.||++-|.|- |.||+.+|+.| ...|++|+..++
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~   36 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYG   36 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcC
Confidence            46899999995 79999999998 478999987643

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=88.64  E-value=1.1  Score=43.46  Aligned_cols=88  Identities=17%  Similarity=0.300  Sum_probs=48.9

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhc--CC-cEEEEE--cCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEG--FK-MNLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a--~g-~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ...+|+|+|. |.+|+.+.+.|. .  +- .++.+.  .++..+..           ...+ ...... ..+. +.++.+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~-~~~hP~~~l~~las~rsaGk~~-----------~~~~-~~~~v~-~~~~-~~~~~~   70 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLT-DRDFPYSSLKMLASARSAGKKV-----------TFEG-RDYTVE-ELTE-DSFDGV   70 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHH-hCCCCcceEEEEEccCCCCCee-----------eecC-ceeEEE-eCCH-HHHcCC
Confidence            3568999997 999999999974 4  32 233333  23222110           0111 111111 1122 345889


Q ss_pred             CEEEEcCCCCcccccccCHhHHcc-CCCCcEEEecC
Q 019328          238 DVISLHPVLDKTTYHLINKERLAT-MKKEAILVNCS  272 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~-mk~gailIN~s  272 (342)
                      |+|++++|.. .+     .++... .+.|+.+|+.|
T Consensus        71 D~vf~a~p~~-~s-----~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         71 DIALFSAGGS-IS-----KKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             CEEEECCCcH-HH-----HHHHHHHHhCCCEEEECC
Confidence            9999999944 22     222222 24688888887

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.61  E-value=0.81  Score=41.12  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ++.|+++.|.|. |.||+.+|+.+ ...|++|+..+++...
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~~   41 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQEK   41 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            377999999998 99999999998 5779999999988643

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=88.49  E-value=1.4  Score=42.58  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~  201 (342)
                      ..|.+|.|.|.|.+|..+++. ++.+|+ +|++.+++..+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~  221 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDK  221 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence            458899999999999999998 489999 79999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=88.45  E-value=0.56  Score=45.64  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +|||||-|..|+.+++.+ +.+|.+|+++|+++..
T Consensus         1 kililG~g~~~~~l~~aa-~~~G~~v~~~d~~~~~   34 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEA-QRLGVEVIAVDRYANA   34 (380)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            589999999999999995 7899999999987643

This enzyme is an alternative to PurN (TIGR00639)

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=88.40  E-value=2.4  Score=40.35  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc-CCHHH----Hhh-cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDE----VLR-EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~e----ll~-~s  237 (342)
                      .|++|.|.|.|.+|+.+++.+ +++|++|++.+++.+...  +...++.       ...-.... .++.+    +.. ..
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~~--~~~~~g~-------~~~i~~~~~~~~~~~~~~~~~~~~  234 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKLE--LARELGA-------VATVNASEVEDVAAAVRDLTGGGA  234 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHHH--HHHHhCC-------CEEEccccchhHHHHHHHHhCCCC
Confidence            478999999999999999985 899999999887765421  1122221       00000011 12222    221 47


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+++-++.. .+    .-...++.|+++..+|+++..
T Consensus       235 d~vi~~~g~-~~----~~~~~~~~l~~~g~~i~~g~~  266 (345)
T cd08260         235 HVSVDALGI-PE----TCRNSVASLRKRGRHVQVGLT  266 (345)
T ss_pred             CEEEEcCCC-HH----HHHHHHHHhhcCCEEEEeCCc
Confidence            888877652 11    123467889999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.39  E-value=2.3  Score=40.89  Aligned_cols=95  Identities=16%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc-cCCHHHHhh-----c
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~-----~  236 (342)
                      .|.+|.|.|. |.+|...++.+ +.+|++|++.+++..+... ....++       ........ ..++.+.+.     .
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlA-k~~G~~Vi~~~~~~~k~~~-~~~~lG-------a~~vi~~~~~~~~~~~i~~~~~~g  228 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLA-KLHGCYVVGSAGSSQKVDL-LKNKLG-------FDEAFNYKEEPDLDAALKRYFPEG  228 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEcCCHHHHHH-HHHhcC-------CCEEEECCCcccHHHHHHHHCCCC
Confidence            5889999999 99999999984 8999999998877654211 000111       11000001 113433332     3


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+++-++.. +     .-...++.++++..++.++-
T Consensus       229 vD~v~d~vG~-~-----~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        229 IDIYFDNVGG-D-----MLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             cEEEEECCCH-H-----HHHHHHHHhccCCEEEEECc
Confidence            6888877651 1     12456788888888887763

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=88.26  E-value=2.4  Score=41.08  Aligned_cols=37  Identities=32%  Similarity=0.408  Sum_probs=32.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~  201 (342)
                      .|.+|.|.|.|.||...++.+ +.+|+ +|++.+++..+
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~A-k~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGA-RMAKASRIIAIDINPAK  222 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            478999999999999999984 89999 79999887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK13529 malate dehydrogenase; Provisional

Probab=88.25  E-value=14  Score=38.20  Aligned_cols=186  Identities=19%  Similarity=0.151  Sum_probs=112.6

Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      +..|++.|+.--   .+|=.+++-+|+..|-.                     |..|...++.|+|.|.-|-.+|+.|..
T Consensus       261 r~~i~~FnDDiQ---GTaaV~LAgll~A~r~~---------------------g~~l~d~riv~~GAGsAgiGia~ll~~  316 (563)
T PRK13529        261 RDEICTFNDDIQ---GTGAVTLAGLLAALKIT---------------------GEPLSDQRIVFLGAGSAGCGIADQIVA  316 (563)
T ss_pred             ccCCCeeccccc---hHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHHHH
Confidence            346777776543   44666788888777632                     357888999999999999999998753


Q ss_pred             c---CCc-------EEEEEcCCh---hhH--HHHHHhhhhhhhccCCCC-Ccc-ccccCCHHHHhhcC--CEEEEcCCCC
Q 019328          187 G---FKM-------NLIYYDLYQ---ATR--LEKFVTAYGQFLKANGEQ-PVT-WKRASSMDEVLREA--DVISLHPVLD  247 (342)
Q Consensus       187 a---~g~-------~V~~~d~~~---~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~ell~~s--DiV~l~lplt  247 (342)
                      +   .|+       +++.+|+.-   +.+  ...+...|   .+..... .+. .....+|.|+++..  |+++=+-   
T Consensus       317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~f---a~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S---  390 (563)
T PRK13529        317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPY---ARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS---  390 (563)
T ss_pred             HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHH---hhhcccccccccccCCCCHHHHHhccCCCEEEEec---
Confidence            2   476       799998762   111  11222222   1111100 000 01125899999988  8887541   


Q ss_pred             cccccccCHhHHccCCC---CcEEEecCCCccCCHHHHHHHHH--cCC-ccEEEeecCCCCCCC-CCCccCCCceEEcCC
Q 019328          248 KTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYM-KPGLSEMKNAIVVPH  320 (342)
Q Consensus       248 ~~t~~li~~~~l~~mk~---gailIN~sRG~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~-~~~L~~~~nvi~TPH  320 (342)
                       ..-+.|+++.++.|.+   .+++.=.|+-...-|-.-.+|.+  +|+ |.+.|--.-..+-.- ...--+..|+++-|-
T Consensus       391 -~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPG  469 (563)
T PRK13529        391 -GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPG  469 (563)
T ss_pred             -CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeeccc
Confidence             2247899999999987   89999998877644444444444  343 444432100000000 012345689999998


Q ss_pred             CCC
Q 019328          321 IAS  323 (342)
Q Consensus       321 ia~  323 (342)
                      ++-
T Consensus       470 igl  472 (563)
T PRK13529        470 LGL  472 (563)
T ss_pred             chh
Confidence            874

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=88.17  E-value=0.62  Score=41.46  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~  198 (342)
                      +.|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            4689999999999999999999985 5676 47778755

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.05  E-value=2.3  Score=41.85  Aligned_cols=95  Identities=19%  Similarity=0.349  Sum_probs=64.9

Q ss_pred             ccccCCCEEEEEcc---ChH-------HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          160 GNLLKGQTVGVIGA---GRI-------GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 g~~l~gktvGIiG~---G~I-------G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      ++.+.|.+|.|+|+   |++       ...+.+.+ ...|.+|.+|||+.+.....+ .            .... ...+
T Consensus       317 ~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l-~~~g~~v~~~DP~v~~~~~~~-~------------~~~~-~~~~  381 (436)
T COG0677         317 GKPLSGSKILVLGLAYKGDVDDLRESPALDIIELL-EEWGGEVLVYDPYVKELPTRE-D------------GEGV-TLAI  381 (436)
T ss_pred             CCCCcCceEEEEEeeecCCCcccccCchHHHHHHH-HHhCCeEEEECCCCCcchhhh-h------------cccc-chhh
Confidence            56799999999998   554       35677776 578899999999976421000 0            0001 1368


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       230 l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      +++.++.+|+|++.+.-  +-..-++.+.+..+  ..+++++ |+
T Consensus       382 ~e~al~~~D~vVi~tDH--~~fk~id~~~i~~~--~~vivDt-rn  421 (436)
T COG0677         382 LEEALKDADAVVIATDH--SEFKEIDYEAIGKE--AKVIVDT-RN  421 (436)
T ss_pred             HHHHhccCCEEEEEecc--HHhhcCCHHHhccC--CcEEEEC-cc
Confidence            89999999999998752  22334777777765  6677775 44

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=88.05  E-value=1.5  Score=39.40  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      ++.||++-|.|. |.||+.+|+.|+ .-|++|+..+|+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLA-EAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCch
Confidence            478999999998 899999999984 6799999999865

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PLN03075 nicotianamine synthase; Provisional

Probab=88.02  E-value=1.5  Score=41.67  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhcc-CCCC-CccccccCCHHHH---hhcC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQ-PVTWKRASSMDEV---LREA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~el---l~~s  237 (342)
                      ..++|..||.|..|-...-.++. .-+.+++++|.++.....+..     ..+. .+.. ...+. ..++.++   +.+.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~-----~~~~~~gL~~rV~F~-~~Da~~~~~~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARR-----LVSSDPDLSKRMFFH-TADVMDVTESLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-----HhhhccCccCCcEEE-ECchhhcccccCCc
Confidence            78999999999887655443322 235689999999764322110     0111 1111 12221 2233322   4689


Q ss_pred             CEEEEcC--CCCcccccccCHhHHccCCCCcEEEec
Q 019328          238 DVISLHP--VLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       238 DiV~l~l--plt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      |+|++.+  ..+++.+.-+-+...+.|+||++|+--
T Consensus       197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            9999883  113455666667888899999998854

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.02  E-value=2.6  Score=40.72  Aligned_cols=37  Identities=32%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~  201 (342)
                      .|.+|.|.|.|.+|...++.+ +.+|+ +|++.+++...
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~a-k~~G~~~vi~~~~~~~~  224 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGA-RIRGASRIIGVDLNPSK  224 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            588999999999999999985 89999 79999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=87.93  E-value=2  Score=45.33  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=32.1

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      -.|++|.|||.|..|...|..| ...|.+|.+|++..
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L-~~~G~~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVL-ARNGVAVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEecCC
Confidence            4799999999999999999997 57899999998753

>PRK10083 putative oxidoreductase; Provisional

Probab=87.90  E-value=2.7  Score=39.84  Aligned_cols=97  Identities=16%  Similarity=0.199  Sum_probs=56.5

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh----c
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----E  236 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a-~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~  236 (342)
                      -.|.+|.|.|.|.+|+.+++.+ ++ +|++ |++.++...+...  ..+++       ....-.....++.+.+.    +
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a-~~~~G~~~v~~~~~~~~~~~~--~~~~G-------a~~~i~~~~~~~~~~~~~~g~~  228 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVL-KGVYNVKAVIVADRIDERLAL--AKESG-------ADWVINNAQEPLGEALEEKGIK  228 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHhCCCCEEEEEcCCHHHHHH--HHHhC-------CcEEecCccccHHHHHhcCCCC
Confidence            3478999999999999999985 65 6986 7777776544211  11121       10000001123334332    2


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .|+++-+.... .    .-.+.++.++++..+|+++..
T Consensus       229 ~d~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        229 PTLIIDAACHP-S----ILEEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             CCEEEECCCCH-H----HHHHHHHHhhcCCEEEEEccC
Confidence            35666655421 1    124567888999999998753

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=87.90  E-value=2.7  Score=39.97  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hhhhhccCCCCCccc-cccCCHHHHh-----h
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTW-KRASSMDEVL-----R  235 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~l~ell-----~  235 (342)
                      .|.+|.|.|. |.+|+.+++.+ +.+|++|++.+++.++..  +... ++       ...... ....++.+.+     .
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlA-k~~G~~Vi~~~~~~~~~~--~~~~~lG-------a~~vi~~~~~~~~~~~i~~~~~~  220 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLA-KLKGCYVVGSAGSDEKVD--LLKNKLG-------FDDAFNYKEEPDLDAALKRYFPN  220 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--HHHHhcC-------CceeEEcCCcccHHHHHHHhCCC
Confidence            5789999998 99999999985 899999998887755421  1111 11       100000 0011333322     2


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ..|+++-++.. .     .-.+.++.++++..++..+.
T Consensus       221 gvd~v~d~~g~-~-----~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         221 GIDIYFDNVGG-K-----MLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             CcEEEEECCCH-H-----HHHHHHHHhccCcEEEEecc
Confidence            46888877651 1     12467888999999998764

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK08589 short chain dehydrogenase; Validated

Probab=87.88  E-value=1.1  Score=41.23  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      .+.||++-|.|. |.||+++|+.|+ .-|++|+..+++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc
Confidence            478999999998 889999999984 679999999987

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=87.72  E-value=1.1  Score=43.99  Aligned_cols=41  Identities=27%  Similarity=0.213  Sum_probs=34.9

Q ss_pred             cccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       159 ~g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .++...|+++.|.|- |.||+.+++.| ..-|.+|++++|+..
T Consensus        54 ~~~~~~~~kVLVtGatG~IG~~l~~~L-l~~G~~V~~l~R~~~   95 (390)
T PLN02657         54 RSKEPKDVTVLVVGATGYIGKFVVREL-VRRGYNVVAVAREKS   95 (390)
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEEechh
Confidence            346788999999997 99999999998 467999999998754

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=87.67  E-value=2.2  Score=38.26  Aligned_cols=38  Identities=29%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+.+|++.|.| .|.||+.+++.|+ ..|++|++.+|+..
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~   41 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            46789999999 6999999999984 67999999998864

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=87.48  E-value=2.2  Score=41.45  Aligned_cols=88  Identities=15%  Similarity=0.328  Sum_probs=48.4

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcE---EEEEc--CChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMN---LIYYD--LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~---V~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +.+|||||. |..|+.+.+.|...-.+.   +..+.  ++..+.           +.-.+ ....... .+.++ ++++|
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~-----------~~~~~-~~l~v~~-~~~~~-~~~~D   70 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKT-----------VQFKG-REIIIQE-AKINS-FEGVD   70 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCC-----------eeeCC-cceEEEe-CCHHH-hcCCC
Confidence            468999998 999999999985223333   43332  222111           10011 1111111 24444 47899


Q ss_pred             EEEEcCCCCcccccccCHhHHcc-CCCCcEEEecC
Q 019328          239 VISLHPVLDKTTYHLINKERLAT-MKKEAILVNCS  272 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~-mk~gailIN~s  272 (342)
                      ++++++|.. .+     +++... .+.|+.+|+.|
T Consensus        71 ivf~a~~~~-~s-----~~~~~~~~~~G~~VID~S   99 (347)
T PRK06728         71 IAFFSAGGE-VS-----RQFVNQAVSSGAIVIDNT   99 (347)
T ss_pred             EEEECCChH-HH-----HHHHHHHHHCCCEEEECc
Confidence            999999843 22     222222 24677777776

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=87.42  E-value=2.3  Score=43.60  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=62.4

Q ss_pred             cccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ..+.||+.-++|=-.| |..++..| +..+..|..+-..                            ..++.+.+.++|+
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHSK----------------------------T~~lae~v~~ADI  208 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHSK----------------------------TRNLAEKVSRADI  208 (935)
T ss_pred             CccccceeEEEecccccCChHHHHH-HhcCceEEEecCC----------------------------CccHHHHhccCCE
Confidence            4689999999998665 88999887 6778888775321                            2478899999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~  279 (342)
                      |+.++--..    ++-.   +.+|||+++|+++--.+-|.
T Consensus       209 vIvAiG~Pe----fVKg---dWiKpGavVIDvGINyvpD~  241 (935)
T KOG4230|consen  209 VIVAIGQPE----FVKG---DWIKPGAVVIDVGINYVPDP  241 (935)
T ss_pred             EEEEcCCcc----eeec---ccccCCcEEEEccccccCCC
Confidence            999986333    3323   34689999999987665543

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=87.41  E-value=1.3  Score=41.01  Aligned_cols=71  Identities=13%  Similarity=0.183  Sum_probs=45.2

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------hc-CC
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE-AD  238 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~-sD  238 (342)
                      +|.|.|. |.+|+.+++.| ..-|.+|.+..|+++.....   ..       ......+....++.+++      .. +|
T Consensus         1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~~---~~-------~~~~~d~~d~~~l~~a~~~~~~~~g~~d   69 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAGP---NE-------KHVKFDWLDEDTWDNPFSSDDGMEPEIS   69 (285)
T ss_pred             CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccCC---CC-------ccccccCCCHHHHHHHHhcccCcCCcee
Confidence            3678887 99999999997 46789999999886532100   00       00011122234566667      45 89


Q ss_pred             EEEEcCCCCc
Q 019328          239 VISLHPVLDK  248 (342)
Q Consensus       239 iV~l~lplt~  248 (342)
                      .|+++.|...
T Consensus        70 ~v~~~~~~~~   79 (285)
T TIGR03649        70 AVYLVAPPIP   79 (285)
T ss_pred             EEEEeCCCCC
Confidence            9998887543

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=87.31  E-value=2.3  Score=38.93  Aligned_cols=94  Identities=21%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH--hhcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--LREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--l~~sDiV  240 (342)
                      .|.++.|.|.|.+|+.+++.+ +++|.+ |++.+++.+...  +..+++.      ....  .  ...+..  -...|++
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a-~~~g~~~vi~~~~~~~~~~--~~~~~g~------~~~~--~--~~~~~~~~~~~~d~v  163 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLA-KAAGAREVVGVDPDAARRE--LAEALGP------ADPV--A--ADTADEIGGRGADVV  163 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEECCCHHHHH--HHHHcCC------Cccc--c--ccchhhhcCCCCCEE
Confidence            578999999999999999984 899998 998887655421  2122210      0000  0  000011  1247888


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +.++....     .-...++.++++..+++++-.+
T Consensus       164 l~~~~~~~-----~~~~~~~~l~~~g~~~~~g~~~  193 (277)
T cd08255         164 IEASGSPS-----ALETALRLLRDRGRVVLVGWYG  193 (277)
T ss_pred             EEccCChH-----HHHHHHHHhcCCcEEEEEeccC
Confidence            87765322     2255678899999999887543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=87.17  E-value=1.5  Score=43.60  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ..++||++.|.|- |.||+++|+.+ ...|++|+..+++.....+.. ....  . .............++.+.+.+.|+
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~l~~~~-~~~~--~-~v~~v~~Dvsd~~~v~~~l~~IDi  248 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDKITLEI-NGED--L-PVKTLHWQVGQEAALAELLEKVDI  248 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHH-hhcC--C-CeEEEEeeCCCHHHHHHHhCCCCE
Confidence            3578999999998 99999999998 467999999998754321111 0000  0 000000001112345566788999


Q ss_pred             EEEcC
Q 019328          240 ISLHP  244 (342)
Q Consensus       240 V~l~l  244 (342)
                      ++.+.
T Consensus       249 LInnA  253 (406)
T PRK07424        249 LIINH  253 (406)
T ss_pred             EEECC
Confidence            98764

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=87.15  E-value=1.7  Score=43.52  Aligned_cols=110  Identities=22%  Similarity=0.291  Sum_probs=64.2

Q ss_pred             EEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc--C
Q 019328          168 VGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH--P  244 (342)
Q Consensus       168 vGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~--l  244 (342)
                      +-+||+|.+|.+ +|+.| +..|.+|.++|.........        ++..+   .......+ .+.+.++|+|+..  +
T Consensus         2 ~~~iGiggsGm~~la~~L-~~~G~~v~~~D~~~~~~~~~--------l~~~g---i~~~~g~~-~~~~~~~d~vV~spgi   68 (448)
T TIGR01082         2 IHFVGIGGIGMSGIAEIL-LNRGYQVSGSDIAENATTKR--------LEALG---IPIYIGHS-AENLDDADVVVVSAAI   68 (448)
T ss_pred             EEEEEECHHHHHHHHHHH-HHCCCeEEEECCCcchHHHH--------HHHCc---CEEeCCCC-HHHCCCCCEEEECCCC
Confidence            679999999998 99997 68999999999765431111        11111   11110112 2445679998876  3


Q ss_pred             CC-Ccccc-------cccCHh-HHcc-CC-CCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          245 VL-DKTTY-------HLINKE-RLAT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       245 pl-t~~t~-------~li~~~-~l~~-mk-~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      |. +|.-+       .++++- ++.. ++ ...+-|-=+.|..--..-+...|+...
T Consensus        69 ~~~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  125 (448)
T TIGR01082        69 KDDNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG  125 (448)
T ss_pred             CCCCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence            32 22211       233332 3322 33 334555556788877777778887643

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK05442 malate dehydrogenase; Provisional

Probab=87.04  E-value=1.2  Score=42.79  Aligned_cols=110  Identities=18%  Similarity=0.141  Sum_probs=58.3

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHh-cCCc-----EEEEEcCChhh-HHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT-RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~-a~g~-----~V~~~d~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (342)
                      .+|+|||. |.+|..+|-.|.. ++--     ++..+|..... ........    +.+.. ..........+..+.+++
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D----l~~~~~~~~~~~~i~~~~y~~~~d   80 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME----LDDCAFPLLAGVVITDDPNVAFKD   80 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh----hhhhhhhhcCCcEEecChHHHhCC
Confidence            48999998 9999999987642 2212     78999985421 01110000    00100 000001112355678899


Q ss_pred             CCEEEEcCC--CCc-ccccc-c--CH-------hHHcc-CCCCcEEEecCCCccCCHHH
Q 019328          237 ADVISLHPV--LDK-TTYHL-I--NK-------ERLAT-MKKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       237 sDiV~l~lp--lt~-~t~~l-i--~~-------~~l~~-mk~gailIN~sRG~~vd~~a  281 (342)
                      ||+|+++.-  ..+ +||.- +  |.       ..+.. -+|.+++|.++  .++|.-.
T Consensus        81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  137 (326)
T PRK05442         81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA  137 (326)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence            999998743  222 23321 1  11       12333 34788999988  4454443

>PRK05717 oxidoreductase; Validated

Probab=87.04  E-value=3.7  Score=37.20  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+.||++-|.|- |.||+.+|+.|+ .-|++|+..+++..
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~-~~g~~v~~~~~~~~   45 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLI-AEGWQVVLADLDRE   45 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHH-HcCCEEEEEcCCHH
Confidence            688999999996 999999999984 67999999988754

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=86.98  E-value=2.7  Score=42.21  Aligned_cols=126  Identities=15%  Similarity=0.261  Sum_probs=73.0

Q ss_pred             CEEEEEccChHHHH--HHHHHHh---cCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          166 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~--vA~~l~~---a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+|.|||-|.. ..  +.+-+.+   .++ -+|..+|..+... +. ...+...+......+.......+.++.+..|||
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCE
Confidence            37999999985 32  2222221   244 6899999987432 11 111111111111224455567899999999999


Q ss_pred             EEEcCCCCc-c----------cccccC----------------------HhHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328          240 ISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       240 V~l~lplt~-~----------t~~li~----------------------~~~l~~mk~gailIN~sRG~~vd~~aL~~aL  286 (342)
                      |++.+--.- +          -+++++                      .+.++...|++++||.+..--+-..++.+.+
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~~  157 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLF  157 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHC
Confidence            998754221 1          112222                      1234445689999999987766666666665


Q ss_pred             HcCCccEE
Q 019328          287 KQNPMFRV  294 (342)
Q Consensus       287 ~~g~i~ga  294 (342)
                      ...++.|.
T Consensus       158 ~~~kviGl  165 (437)
T cd05298         158 PNARILNI  165 (437)
T ss_pred             CCCCEEEE
Confidence            44555555

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=86.96  E-value=1.7  Score=42.06  Aligned_cols=90  Identities=19%  Similarity=0.328  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhc-CC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCE
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEG-FK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADV  239 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a-~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDi  239 (342)
                      .+.+|||||. |-.|+++.+.|... +. .++..+......         |..+.-.+. ...   ..++++. ++++|+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa---------G~~~~~~~~-~~~---v~~~~~~~~~~~Dv   69 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA---------GETLRFGGK-SVT---VQDAAEFDWSQAQL   69 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC---------CceEEECCc-ceE---EEeCchhhccCCCE
Confidence            4568999998 99999999998421 43 355544322111         000111111 111   1244444 378999


Q ss_pred             EEEcCCCCcccccccCHhHHccC-CCCcEEEecC
Q 019328          240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~m-k~gailIN~s  272 (342)
                      +++++|..      +..+..... +.|+.+|+.|
T Consensus        70 vf~a~p~~------~s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         70 AFFVAGRE------ASAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             EEECCCHH------HHHHHHHHHHHCCCEEEECC
Confidence            99999943      222333332 5688888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-39
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		3e-37
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		1e-33
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		6e-29
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		6e-28
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		1e-27
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		5e-26
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-24
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		5e-24
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		6e-24
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		7e-24
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		1e-23
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-23
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		3e-23
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		3e-23
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		3e-23
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		5e-23
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		6e-23
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		6e-23
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		6e-23
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		6e-23
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		1e-22
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		2e-22
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-22
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		3e-22
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		4e-22
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-22
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-22
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		8e-22
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		1e-21
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		2e-21
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		3e-20
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		3e-19
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		7e-19
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		3e-17
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		3e-17
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		5e-17
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		1e-16
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		3e-16
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		6e-15
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		9e-15
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		8e-13
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		1e-12
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		3e-12
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		3e-11
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		4e-11
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		4e-11
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		4e-11
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		1e-09
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		1e-09
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-08
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		4e-08
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-08
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		6e-08
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-07
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		1e-06

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 170/313 (54%), Gaps = 25/313 (7%)
Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N
Sbjct: 18  MLEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVAN 73
Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD- 151
            AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +  
Sbjct: 74  YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + 
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELN 192
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F                ++++LRE+D + L   L + TYHLIN+ERL  MKK AIL
Sbjct: 193 A--EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328
           +N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA 296
Query: 329 REGMATLAALNVL 341
           REGMA L A N++
Sbjct: 297 REGMAELVAKNLI 309

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 166/312 (53%), Gaps = 25/312 (8%)
Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93
           +E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N 
Sbjct: 19  LEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTXLSERIDKEVFENAPKL--RIVANY 74
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 151
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 152 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
              W P  F+G  + G+T+G+IG GRIG A A+   +GF   ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
             +F                ++++LRE+D + L   L + TYHLIN+ERL   KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329
           N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 330 EGMATLAALNVL 341
           EG A L A N++
Sbjct: 298 EGXAELVAKNLI 309

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 176/328 (53%), Gaps = 34/328 (10%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +PG + ++ L E+   VE+   +   L   +++     + +G +G +      
Sbjct: 2   RVLVTRTLPG-KALDRLRERGLEVEV--HRGLFLPKAELL----KRVEGAVGLIPTVEDR 54
Query: 77  TLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
                + RA G K  +  +VG ++VD+ AA + GI V +TPGV                 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+  +  F M ++Y+
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH 173
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
                               A   +P+ +    S++E+L+EADV+SLH  L   T+ L+N
Sbjct: 174 --------------------ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLN 212
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMK 313
           +ERL  MK+ AIL+N +RG ++D  ALVE L+ + +F  GLDV + EP + PG  L  + 
Sbjct: 213 RERLFAMKRGAILLNTARGALVDTEALVEALRGH-LFGAGLDVTDPEP-LPPGHPLYALP 270
Query: 314 NAIVVPHIASASKWTREGMATLAALNVL 341
           NA++ PHI SA + TRE MA +A  N+L
Sbjct: 271 NAVITPHIGSAGRTTRERMAEVAVENLL 298

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/244 (36%), Positives = 132/244 (54%), Gaps = 21/244 (8%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +N+DV AA + GI V N P                   R+I  AD  MR 
Sbjct: 68  KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G+   W     +G  L+G+T+G+IG GRIG   A++      MN++ YD Y      K V
Sbjct: 128 GV---WAKKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEV 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              G+F+               ++ +L+E+DV+++H  L ++TYHLIN+ERL  MKK AI
Sbjct: 184 N--GKFV--------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASK 326
           L+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  N ++ PHI +++ 
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTV 287
Query: 327 WTRE 330
             +E
Sbjct: 288 EAQE 291

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 17/245 (6%)
Query: 86  GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFM 145
           G K  + ++VGY+++D  AA   GI V +TP V                 RR  EAD  +
Sbjct: 94  GLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXV 153
Query: 146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205
           R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y++    TRL  
Sbjct: 154 RSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSH 209
Query: 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE 265
            +           E+   +    ++D +L  +D+  +           ++ +R+A + + 
Sbjct: 210 AL-----------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256
Query: 266 AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N  + PHI SA+
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSAT 316
Query: 326 KWTRE 330
             TR+
Sbjct: 317 HETRD 321

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 29/302 (9%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  +
Sbjct: 29  DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYS 75
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G++++D++A    GI VGN P                   RR  E ++ +R   + GW 
Sbjct: 76  IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE 135
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+             
Sbjct: 136 PLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------- 181
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
            ++ E         S+D +L  +   SL+      T +  NK  + ++ + AI+VN +RG
Sbjct: 182 -SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            ++D   +V  L+   +   G DVF  EP +  G  ++ N  + PHI SA+   RE MA 
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAH 300
Query: 335 LA 336
            A
Sbjct: 301 QA 302

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 148/326 (45%), Gaps = 20/326 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 10  KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 67
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S M+VG +++ ++   K GI VG TP V                 R
Sbjct: 68  RILDA-AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 126
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 127 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 185
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 186 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Query: 316 IVVPHIASASKWTREGMATLAALNVL 341
           +++PHI SA+  TR  M+ LAA N+L
Sbjct: 291 VILPHIGSATHRTRNTMSLLAANNLL 316

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 132/287 (45%), Gaps = 24/287 (8%)
Query: 54  DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG 113
           D +AL  +    V+G         L  AL +   +  S+ +VG + VD+    + G+ V 
Sbjct: 57  DFLALQAESIRAVVGNSNAGADAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVT 114
Query: 114 NTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           NTP V                 RRI E D+++R G +     +  +     G+ VG+IG 
Sbjct: 115 NTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK--FGDFKLTTKFSGKRVGIIGL 172
Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           GRIG A A    E F   + Y+     +R +K  T Y  +               S+ E+
Sbjct: 173 GRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTYY--------------GSVVEL 212
Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
              +D++ +   L   T H+IN+E +  +  + +L+N  RGP +DE  LV  L +  +  
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 294 VGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNV 340
            GLDVFE EP +   L  ++N +++PH+ S +  TR+ MA L   N+
Sbjct: 273 AGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNL 319

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 128/293 (43%), Gaps = 35/293 (11%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+ AG    S   VG +N+D++ A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                        R+    DE M A     W P   +G  ++ Q VGV+G G IG  + R
Sbjct: 107 IAEHAAIQAARVLRQDKRMDEKM-AKRDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMR 163
Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVISL
Sbjct: 164 IM-EGFGAKVIAYDIFKNPELEK----KGYYV-------------DSLDDLYKQADVISL 205
Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H        H+IN + +A MK   ++VNCSRG ++D  A++  L    +F   +D +EDE
Sbjct: 206 HVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE 265
Query: 303 -------------PYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
                        P  +   L +  N +V PH A  +      M   A  N L
Sbjct: 266 VGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMVVKAFNNNL 318

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 145/326 (44%), Gaps = 20/326 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 8   KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 65
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S  +VG +++ ++   K GI VG TP V                 R
Sbjct: 66  RILDA-AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 124
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 125 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 183
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 184 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +     K+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
Query: 316 IVVPHIASASKWTREGMATLAALNVL 341
           +++PHI SA+  TR   + LAA N+L
Sbjct: 289 VILPHIGSATHRTRNTXSLLAANNLL 314

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 150/339 (44%), Gaps = 52/339 (15%)
Query: 20  STKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTED 73
           S  P P    + LL  +DC VE+      IL     +A     CD    Q      L E 
Sbjct: 1   SMHPRP---LVALLDGRDCTVEM-----PILKDLATVAF----CDAQSTQEIHEKVLNEA 48
Query: 74  WGETLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXX 125
            G  ++    L+R   + F  + V      GY+NVD+ AA + GIAV N P         
Sbjct: 49  VGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETAD 108
Query: 126 XXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYA 181
                     RR     + +R G     +  +         ++G+T+G+IG GR G A A
Sbjct: 109 STICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVA 168
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
            +  + F  ++I+YD Y               L+   E+ +  +R  ++ ++L ++D +S
Sbjct: 169 -VRAKAFGFSVIFYDPY---------------LQDGIERSLGVQRVYTLQDLLYQSDCVS 212
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E 
Sbjct: 213 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 272
Query: 302 EP--YMKPGLSEMKNAIVVPHIA----SASKWTREGMAT 334
           EP  + +  L +  N I  PH A     AS   RE  AT
Sbjct: 273 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAAT 311

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 144/320 (45%), Gaps = 45/320 (14%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG GR+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y +  +E+   A G             +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIA 322
            + +  L +  N I  PH A
Sbjct: 295 SFSQGPLKDAPNLICTPHAA 314

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 141/296 (47%), Gaps = 27/296 (9%)
Query: 51  SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGI 110
           S E++  +IG + DG+I   T      +     R   K  S  + GY+N+D+  A K GI
Sbjct: 32  SGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHSAGYDNIDLEEATKRGI 88
Query: 111 AVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQ 166
            V    G+                 R+I  AD+F+R G ++     ++ G      L G+
Sbjct: 89  YVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH-AKIWTGFKRIESLYGK 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
            VG++G G IG A AR ++  F + L Y+  ++   +EK + A                R
Sbjct: 148 KVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA----------------R 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
              +DE+L ++D++ L   L + TYH+IN+ER+  ++ +  LVN  RG ++DE A+ E +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAI 249
Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWTREGMATLAALNVL 341
           KQ  +     DVFE EP  +  L + +   ++ PH A  +   +E +   A  N+L
Sbjct: 250 KQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLL 305

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 22/233 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 95  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIA 322
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 311

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 129/272 (47%), Gaps = 35/272 (12%)
Query: 69  QLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
           QLTE+    +FAA +R    A    +VG N V++ AA K GI V N P            
Sbjct: 69  QLTEE----IFAAANRL--IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVI 122
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
                  RRI        AG   GW         ++G+T+G++G G IGS    +  E  
Sbjct: 123 GEIIMLMRRIFPRSVSAHAG---GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESL 178
Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M + YYD   + +L+     YG             K A+S+DE+L+ +DV+SLH    K
Sbjct: 179 GMTVRYYD--TSDKLQ-----YGNV-----------KPAASLDELLKTSDVVSLHVPSSK 220
Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP----- 303
           +T  LI + +L  MKK A L+N +RG  +D  AL + L++  +    +DVF  EP     
Sbjct: 221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGE 280
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            +  P L  ++N I+ PHI  +++  +E + T
Sbjct: 281 RFSTP-LQGLENVILTPHIGGSTEEAQERIGT 311

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y +  +E+   A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                        +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIA 322
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 116/260 (44%), Gaps = 34/260 (13%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 68  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 126
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 127 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 174
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 175 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 220
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 221 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 280
Query: 321 IASASKWTREGMATLAALNV 340
           + +++   ++   T  A +V
Sbjct: 281 LGASTAEAQDRAGTDVAESV 300

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 116/260 (44%), Gaps = 34/260 (13%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 67  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 125
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 126 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 173
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 174 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 219
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 220 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 279
Query: 321 IASASKWTREGMATLAALNV 340
           + +++   ++   T  A +V
Sbjct: 280 LGASTAEAQDRAGTDVAESV 299

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 23/241 (9%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+  G    S   VG +N+D+  A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
                        R+    DE  +   +D  W P   +G  ++ Q VGV+G G IG  + 
Sbjct: 107 IAEHAAIQAARILRQDKAMDE--KVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFM 162
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           ++M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVIS
Sbjct: 163 QIM-EGFGAKVITYDIFRNPELEK----KGYYV-------------DSLDDLYKQADVIS 204
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E 
Sbjct: 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264
Query: 302 E 302
           E
Sbjct: 265 E 265

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 24/268 (8%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
           +D   ++  +    L   + +AL     DGV+     D+      AL+  G    S   V
Sbjct: 21  EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
           G +N+D+  A + G  + N P                   R+    DE  +   +D  W 
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                         S+D++ ++ADVISLH        H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           P++D  A++  L    +F   +DV+E E
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYEGE 265

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 23/281 (8%)
Query: 46  KKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAA 105
           +K  LS E++IA + D C+G+I +        +  A  +   +       G +NVD+ AA
Sbjct: 52  EKQNLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRAGTGVDNVDLEAA 108
Query: 106 NKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
            + GI V NTP                   R+I +A   M+ G    W    F+G  L G
Sbjct: 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWERKKFMGTELNG 165
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           +T+G++G GRIG   A  M + F M  I YD   +  +     ++G              
Sbjct: 166 KTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG-------------V 208
Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
           +   ++E+    D I++H  L  +T  L+N    A  KK   +VNC+RG ++DE AL+  
Sbjct: 209 QQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRA 268
Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
           L+        LDVF +EP     L + +N I  PH+ +++K
Sbjct: 269 LQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTK 309

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 45/320 (14%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG  R+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y +  +E+   A G             +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIA 322
            + +  L +  N I  PH A
Sbjct: 295 SFSQGPLKDAPNLICTPHAA 314

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 114/254 (44%), Gaps = 25/254 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 300
Query: 328 TREGMATLAALNVL 341
            R  +   AA N+L
Sbjct: 301 VRLEIERCAAQNIL 314

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 25/254 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVL 341
            R  +   AA N+L
Sbjct: 300 VRLEIERCAAQNIL 313

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 25/254 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVL 341
            R  +   AA N+L
Sbjct: 300 VRLEIERCAAQNIL 313

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 120/280 (42%), Gaps = 34/280 (12%)
Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
           E ++  LS  G K      VG+N ++ +   KY + V N P                   
Sbjct: 60  EVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLL 119
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           R+I E    M       W  NL + N +   TVG+IG G IGSA A +        +I Y
Sbjct: 120 RKIGEFRYRMDHDHDFTWPSNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAY 177
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           D+      E F+T Y  F                 D VL+EAD++SLH  L  +T ++I 
Sbjct: 178 DVAYNPEFEPFLT-YTDF-----------------DTVLKEADIVSLHTPLFPSTENMIG 219
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------------- 302
           +++L  MKK A L+NC+RG ++D  AL++ L+   +   GLD    E             
Sbjct: 220 EKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSE 279
Query: 303 -PYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
            P     L++M N ++ PH A  ++ +   M  +   + L
Sbjct: 280 IPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQL 319

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 114/254 (44%), Gaps = 25/254 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVL 341
            R  +   AA N+L
Sbjct: 300 VRLEIERCAAQNIL 313

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 114/254 (44%), Gaps = 25/254 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVL 341
            R  +   AA N+L
Sbjct: 300 VRLEIERCAAQNIL 313

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 113/246 (45%), Gaps = 21/246 (8%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           VG + VD+  A +  I V  TPGV                 RR+ + D  +R G +    
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
             L +G+  KG+ +GV+G G+IG A A    E F  ++ Y++           T  G   
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRS---------TLSG--- 207
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                  V W    S  ++ R++DV+++       T ++++   L  +  E I+VN +RG
Sbjct: 208 -------VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            V+DE AL+E LK   +   GLDVF +EP ++       N ++ PH  SA+  TR     
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGK 320
Query: 335 LAALNV 340
           L   N+
Sbjct: 321 LVLANL 326

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 37/288 (12%)
Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
           DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI + N P       
Sbjct: 46  DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                       R + +    ++AG Y+      F+G  L  QTVGV+G G IG   A  
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQV-AIK 162
Query: 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243
           + +GF   +I YD Y                   G+ P       S++++ +++DVI LH
Sbjct: 163 LFKGFGAKVIAYDPY----------------PMKGDHPDF--DYVSLEDLFKQSDVIDLH 204
Query: 244 -PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
            P +++ T H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +E E
Sbjct: 205 VPGIEQNT-HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 263
Query: 303 -----------PYMKPGLSE---MKNAIVVPHIASASKWTREGMATLA 336
                       +  P   E   M N ++ PHIA  ++     M   +
Sbjct: 264 TEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFS 311

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 113/251 (45%), Gaps = 36/251 (14%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K     +VG++++D++   K GI V + P                   +R+   ++  R 
Sbjct: 66  KLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RV 123
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
              +    +  +   L   T+GVIG GRIGS  A   +  F   ++ YD+ +   L++  
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKG 182
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
             Y                 +S+DE+L+E+DVISLH    K T+H IN+ER++  K    
Sbjct: 183 CVY-----------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVY 225
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------KPGLSEMK------ 313
           L+N +RG V+D  AL    ++     +GLDVFEDE  +        K     +K      
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELAC 285
Query: 314 --NAIVVPHIA 322
             N I+ PHIA
Sbjct: 286 KDNVIITPHIA 296

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 29/250 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASKWTREGM 332
            +++  +E +
Sbjct: 295 GSTQEAQENI 304

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 29/250 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASKWTREGM 332
            +++  +E +
Sbjct: 295 GSTQEAQENI 304

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 25/257 (9%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   +G +N+D   A K  I V   PG                  R++  +    ++
Sbjct: 70  KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G++         G  L G+T+G++G GRIG+    ++     M ++ YD+       + +
Sbjct: 130 GIFKK-----IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKI 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A                +A S++E+L+ +DVISLH  + K    +I+  +   MK   I
Sbjct: 184 NA----------------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASA 324
           +VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV  HI + 
Sbjct: 228 IVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQ 287
Query: 325 SKWTREGMATLAALNVL 341
           +K  ++ +A +   N+L
Sbjct: 288 TKEAQKRVAEMTTQNLL 304

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 29/250 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 77  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 136
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 137 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 187
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 188 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 234
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 235 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 293
Query: 323 SASKWTREGM 332
            +++  +E +
Sbjct: 294 GSTQEAQENI 303

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 23/191 (12%)
Query: 155 PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
           PN  +G +LKGQT+G+ G G+IG   + Y R     F MN++ +    +           
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
           +  +A+G     +  A S D +  ++DV+S+H  L+  T  +I    L  MK  A+ VN 
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTRE 330
           SR  +++E  +V  L +       +DVFE EP ++   L  M+N I  PHI    + + E
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYE 310
Query: 331 GMATLAALNVL 341
               +A  N+L
Sbjct: 311 MYFGIAFQNIL 321

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 29/250 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 72  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 131
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           + +      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 132 VGNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 182
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 183 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 229
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 230 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 288
Query: 323 SASKWTREGM 332
            +++  +E +
Sbjct: 289 GSTQEAQENI 298

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 106/250 (42%), Gaps = 29/250 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 294
Query: 323 SASKWTREGM 332
            +++  +E +
Sbjct: 295 GSTQEAQENI 304

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 229 SMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
           S++ +L EADVISLH  L++     T HL+++ RLA ++    LVN SRG V+D  AL  
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 285 HLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            L+      V LDV+E EP   P L+  +  I  PHIA  S
Sbjct: 220 LLEGGADLEVALDVWEGEPQADPELA-ARCLIATPHIAGYS 259

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+ +T+G++G G +GS   +  +E   +  +  D  +A R ++     G F      
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    ++DE+++EADV++ H  L K     T HL ++  +  +K  AIL+N  RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 333
           V+D  AL+  L       V LDV+E EP +   L E  + I   HIA    +T EG A
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIAG---YTLEGKA 267

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++  TVGV+G GRIG   A++   G    +I  D+++   +E + T              
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV------------ 190
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
                 S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A+
Sbjct: 191 ------SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAV 244
Query: 283 VEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKW 327
           +E ++   +   G DV + E               P  +  +      ++ PH+ S +  
Sbjct: 245 IEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDE 304
Query: 328 TREGMATLAALNV 340
             + M  ++  N+
Sbjct: 305 AVKNMVEVSYQNL 317

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 272 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 266 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267
Query: 283 VEHLKQNPMFRVGLDVFEDEPYMK 306
              L+   +   G DV+  +P  K
Sbjct: 268 AAALESGQLRGYGGDVWFPQPAPK 291

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 268
Query: 283 VEHLKQNPMFRVGLDVFEDEPYMK 306
              L+   +   G DV+  +P  K
Sbjct: 269 AAALESGQLRGYGGDVWFPQPAPK 292

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 122 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 179 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 231
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 232 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF--EDEPYMKPGLSEMKNAIVVPHIASAS 325
           RG + D  A+V  L+   +     DV+  +  P   P  +   N +  PHI+  S
Sbjct: 284 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGM-TPHISGTS 337

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 123 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 180 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 232
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 233 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF--EDEPYMKPGLSEMKNAIVVPHIASAS 325
           RG + D  A+V  L+   +     DV+  +  P   P  +   N +  PHI+  S
Sbjct: 285 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGM-TPHISGTS 338

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 136 RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
           +RI++  E  + G Y  D  +P      L++G+ V V+G G IG                
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHPVLDKTTY 251
                  TR+ K + A G  ++     P    W+  +S++E LREA        L+K T 
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
            L+  + LA   ++A+ VN  R  V+D   ++  LK+ P F    DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 337

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY- 304
           L  TT+HL + E     K++ +L+N  RGP +D  AL+  L  + +    LDV E EP  
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP 260
Query: 305 MKPGLSEMKNAIVVPHIA 322
               L +  + ++ PHI+
Sbjct: 261 TDHPLWQRDDVLITPHIS 278

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 26/177 (14%)
Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + + G  LKG+T+ ++G G IG   A    + F M ++       +R  +    + Q
Sbjct: 130 WQSHPYQG--LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQ 181
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             +             +++++L +ADVI S+ P   + T+HL    R    K  AIL N 
Sbjct: 182 VYQL-----------PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNV 229
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM---KNAIVVPHIASAS 325
            RG  I+E  L+  L+   +    LDVFE EP   P  S +    N I+ PH ++ S
Sbjct: 230 GRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL--PADSPLWGQPNLIITPHNSAYS 284

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-110
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-109
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-106
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-105
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-103
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-101
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	4e-99
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	9e-95
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	2e-94
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-92
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-86
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	1e-85
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-83
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	4e-82
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	2e-81
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	9e-81
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	7e-79
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	3e-78
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	4e-76
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	3e-75
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	5e-75
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	9e-72
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	7e-71
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	2e-70
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-67
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-65
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	3e-65
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	6e-63
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	1e-59
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	5e-58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	2e-31
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	4e-29
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-12

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  321 bits (826), Expect = e-110
 Identities = 87/327 (26%), Positives = 153/327 (46%), Gaps = 20/327 (6%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLPEA-AMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P  +T  TAE+A  L L +
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGS 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y
Sbjct: 116 ARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDY 174

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +D ++                ++ E         S+D +L  +   SL+      T +  
Sbjct: 175 FDTHR--------------ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 220

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DVF  EP +  G  ++ N
Sbjct: 221 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 280

Query: 315 AIVVPHIASASKWTREGMATLAALNVL 341
             + PHI SA+   RE MA  A   + 
Sbjct: 281 TFLFPHIGSAATQAREDMAHQANDLID 307

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  320 bits (822), Expect = e-109
 Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 27/331 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E +  VE+    +  +  E ++  + +  D ++  L+E  
Sbjct: 2   KPKVFITREIP-EVGIKML-EDEFEVEVW-GDEKEIPREILLKKVKE-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +F    +   +  +N AVGY+N+D+  A K GI V NTP VLT+ TA+LA +L LA 
Sbjct: 58  DKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115

Query: 135 ARRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           AR +V+ D F+R+G        W P  F+G  + G+T+G+IG GRIG A A+   +GF M
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +   +E+ + A                    ++++LRE+D + L   L + T
Sbjct: 175 RILYYSRTRKEEVERELNA----------------EFKPLEDLLRESDFVVLAVPLTRET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YHLIN+ERL  MKK AIL+N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVL 341
           ++ N ++ PHI SAS   REGMA L A N++
Sbjct: 279 KLDNVVLTPHIGSASFGAREGMAELVAKNLI 309

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  313 bits (804), Expect = e-106
 Identities = 89/327 (27%), Positives = 154/327 (47%), Gaps = 22/327 (6%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             +    +       I   + Q   +E+   + T+L+   I +      + +    TE  
Sbjct: 28  IQKAFLCRRFTPA--IEAELRQRFDLEV-NLEDTVLTPSGIASRAHG-AEVLFVTATEAI 83

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +   L   G K  + ++VGY+++D+ AA   GI V +TP VL++  AE+A  L L A
Sbjct: 84  TAEVIRKLQ-PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNA 142

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RR  EAD  +R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y
Sbjct: 143 CRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHY 201

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++  + +   +    Y                  ++D +L  +D+  +           +
Sbjct: 202 HNRTRLSHALEEGAIY----------------HDTLDSLLGASDIFLIAAPGRPELKGFL 245

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           + +R+A + + A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N
Sbjct: 246 DHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDN 305

Query: 315 AIVVPHIASASKWTREGMATLAALNVL 341
             + PHI SA+  TR+ M  L    + 
Sbjct: 306 IFLTPHIGSATHETRDAMGWLLIQGIE 332

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  311 bits (800), Expect = e-105
 Identities = 102/332 (30%), Positives = 152/332 (45%), Gaps = 22/332 (6%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
           P    +V  T+ +P       L    DC VE        +  +++   +     G++  L
Sbjct: 5   PVRLMKVFVTRRIP-AEGRVALARAADCEVEQ-WDSDEPIPAKELERGVAG-AHGLLCLL 61

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
           ++   + +  A   A  K  S M+VG +++ ++   K GI VG TP VLT+TTAELA SL
Sbjct: 62  SDHVDKRILDAAG-ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSL 120

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            L   RR+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +   F +
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PFGV 179

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
               Y         +    +                  S  E+  ++D I +   L   T
Sbjct: 180 QRFLYT--GRQPRPEEAAEFQ-------------AEFVSTPELAAQSDFIVVACSLTPAT 224

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGL 309
             L NK+    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L
Sbjct: 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPL 284

Query: 310 SEMKNAIVVPHIASASKWTREGMATLAALNVL 341
             +KN +++PHI SA+  TR  M+ LAA N+L
Sbjct: 285 LTLKNCVILPHIGSATHRTRNTMSLLAANNLL 316

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  306 bits (785), Expect = e-103
 Identities = 116/326 (35%), Positives = 177/326 (54%), Gaps = 30/326 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +P  + ++ L E+    E+   +   L   +++  +     G+I  + +    
Sbjct: 2   RVLVTRTLP-GKALDRLRERGL--EVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDA 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
            +         K  +  +VG ++VD+ AA + GI V +TPGVLTE TA+L  +L LA AR
Sbjct: 58  EVMDRAKGL--KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+     F M ++Y+ 
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                R  K               P  +    S++E+L+EADV+SLH  L   T+ L+N+
Sbjct: 175 -----RTPK-------------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNR 213

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNA 315
           ERL  MK+ AIL+N +RG ++D  ALVE L+   +F  GLDV + EP      L  + NA
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272

Query: 316 IVVPHIASASKWTREGMATLAALNVL 341
           ++ PHI SA + TRE MA +A  N+L
Sbjct: 273 VITPHIGSAGRTTRERMAEVAVENLL 298

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  301 bits (773), Expect = e-101
 Identities = 94/335 (28%), Positives = 148/335 (44%), Gaps = 31/335 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             ++V T  +     + LL    C +    Q  + L+ E+I+    D    ++  + +  
Sbjct: 2   LPKLVITHRVHE-EILQLL-APHCELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRV 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
                 A      +       G++N DV+A    G+ +   P +LT  TAELA  L++  
Sbjct: 58  DADFLQACPEL--RVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            R +  AD F+R+G + GW P  F G  L   TVG +G G IG A A  +  G+   L Y
Sbjct: 116 GRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQY 173

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++                 L    EQ +  ++  +  E+   +D I L   L+  T HL+
Sbjct: 174 HEAKA--------------LDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV 218

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-------- 306
           N E LA ++  A+LVN  RG V+DE A++  L++  +     DVFE E + +        
Sbjct: 219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQID 278

Query: 307 PGLSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
           P L    N +  PHI SA +  R  +   AA N+L
Sbjct: 279 PALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  295 bits (758), Expect = 4e-99
 Identities = 82/318 (25%), Positives = 135/318 (42%), Gaps = 25/318 (7%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGG 87
            +Q   V            + +        + +I      G  +  W   L + L  +  
Sbjct: 23  FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP-SSL 81

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G     T++LA  L L+  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141

Query: 148 GLYDGWLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +           +  +G  +G +G G I    AR  V G  M L+YYD+      
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP---- 197

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 198 ----------ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307

Query: 324 ASKWTREGMATLAALNVL 341
            +  T      L   N+ 
Sbjct: 308 VAIETFHEFERLTMTNID 325

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  284 bits (728), Expect = 9e-95
 Identities = 87/331 (26%), Positives = 144/331 (43%), Gaps = 29/331 (8%)

Query: 11  NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
             N K  ++  +PM    ++   ++++  V    Q         + A +      V    
Sbjct: 26  FRNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQA---ADRPALEAALPS-IRAVATGG 79

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
                      L        +   VG + VD+  A +  I V  TPGVL +  A+L  +L
Sbjct: 80  GAGLSNEWMEKLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIAL 137

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            LA  RR+ + D  +R G +      L +G+  KG+ +GV+G G+IG A A    E F M
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAG-EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGM 195

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           ++ Y++     R                   V W    S  ++ R++DV+++       T
Sbjct: 196 SVRYWN-----RSTL--------------SGVDWIAHQSPVDLARDSDVLAVCVAASAAT 236

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
            ++++   L  +  E I+VN +RG V+DE AL+E LK   +   GLDVF +EP ++    
Sbjct: 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFH 296

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVL 341
              N +++PH  SA+  TR  M  L   N+ 
Sbjct: 297 TTPNTVLMPHQGSATVETRMAMGKLVLANLA 327

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  282 bits (725), Expect = 2e-94
 Identities = 95/331 (28%), Positives = 151/331 (45%), Gaps = 31/331 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V     M     +  L ++   VEI        S E++  +IG   DG+I   T   
Sbjct: 2   RPKVGVLLKMKRE-ALEEL-KKYADVEIILY----PSGEELKGVIGR-FDGIIVSPTTKI 54

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +     R   K  S  + GY+N+D+  A K GI V    G+L+E  AE    L +  
Sbjct: 55  TREVLENAERL--KVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112

Query: 135 ARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
            R+I  AD+F+R G ++              L G+ VG++G G IG A AR +   F + 
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVK 171

Query: 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
           L Y+  ++   +EK + A                R   +DE+L ++D++ L   L + TY
Sbjct: 172 LYYWSRHRKVNVEKELKA----------------RYMDIDELLEKSDIVILALPLTRDTY 215

Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL-S 310
           H+IN+ER+  ++    LVN  RG ++DE A+ E +KQ  +     DVFE EP  +  L  
Sbjct: 216 HIINEERVKKLEG-KYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFK 274

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVL 341
                ++ PH A  +   +E +   A  N+L
Sbjct: 275 YEWETVLTPHYAGLALEAQEDVGFRAVENLL 305

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  278 bits (713), Expect = 1e-92
 Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 29/327 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
              V+   PM    ++   +++  ++    +  T  +  D +AL  +    V+G      
Sbjct: 23  AIGVLMMCPMST--YLEQELDKRFKL---FRYWTQPAQRDFLALQAESIRAVVGNSNAGA 77

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L  AL +   +  S+ +VG + VD+    + G+ V NTP VLT+  A+LA  L LA 
Sbjct: 78  DAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RRI E D+++R G +     +  +     G+ VG+IG GRIG A A    E F   + Y
Sbjct: 136 LRRICECDKYVRRGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISY 192

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +      R +K                  +    S+ E+   +D++ +   L   T H+I
Sbjct: 193 FS-----RSKK--------------PNTNYTYYGSVVELASNSDILVVACPLTPETTHII 233

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N+E +  +  + +L+N  RGP +DE  LV  L +  +   GLDVFE EP +   L  ++N
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLEN 293

Query: 315 AIVVPHIASASKWTREGMATLAALNVL 341
            +++PH+ S +  TR+ MA L   N+ 
Sbjct: 294 VVLLPHVGSGTVETRKVMADLVVGNLE 320

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  262 bits (673), Expect = 2e-86
 Identities = 84/336 (25%), Positives = 141/336 (41%), Gaps = 29/336 (8%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
            +    V        T  + +L +    V  C       S ++I   + ++  G +   T
Sbjct: 18  GSHMPLVALLDGRDCTVEMPIL-KDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHT 72

Query: 72  EDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS 131
                           +    +  G++N+D+ +A   GIAV N P    E TA+      
Sbjct: 73  ITLTREDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHI 130

Query: 132 LAAARRIVEADEFMRAGL----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187
           L   RR     + +R G      +           ++G+T+G+IG GR+G A A    + 
Sbjct: 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KA 189

Query: 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247
           F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH  L+
Sbjct: 190 FGFNVLFYDPY---------------LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLN 234

Query: 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP 307
           +  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP+   
Sbjct: 235 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 294

Query: 308 G--LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
              L +  N I  PH A  S+     M   AA  + 
Sbjct: 295 QGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIR 330

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  259 bits (664), Expect = 1e-85
 Identities = 62/293 (21%), Positives = 108/293 (36%), Gaps = 32/293 (10%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           +    + G     V   L         A + R   K    +  G +++   +     + V
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRL--KFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
               G   +  AE A +L LA  +RI++  E M+ G Y   +       L++G+ V V+G
Sbjct: 76  AGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE----IPLIQGEKVAVLG 131

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG+   +++       +  +                            W+  +S++E
Sbjct: 132 LGEIGTRVGKIL-AALGAQVRGFSRTPK--------------------EGPWRFTNSLEE 170

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
            LREA        L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F
Sbjct: 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 230

Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTR--EGMATLAALNVL 341
               DV+              + N +  P +A      R    M   A  N++
Sbjct: 231 IFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLI 283

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  254 bits (652), Expect = 1e-83
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 29/328 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V+   P+   + I +L +    V      +     + ++ L+ D  + +I +     
Sbjct: 3   RMKVLVAAPLH-EKAIQVLKDAGLEVIY----EEYPDEDRLVELVKD-VEAIIVRSKPKV 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +  +  +   K  +   VG +N+DV AA + GI V N P   + + AELA  L  + 
Sbjct: 57  TRRVIESAPKL--KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           AR+I  AD  MR G    W     +G  L+G+T+G+IG GRIG   A++      MN++ 
Sbjct: 115 ARKIAFADRKMREG---VWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILL 170

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y     E+                  +     ++ +L+E+DV+++H  L ++TYHLI
Sbjct: 171 YDPYPN---EERAKEVN----------GKFV---DLETLLKESDVVTIHVPLVESTYHLI 214

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMK 313
           N+ERL  MKK AIL+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  
Sbjct: 215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFD 274

Query: 314 NAIVVPHIASASKWTREGMATLAALNVL 341
           N ++ PHI +++   +E      A  V+
Sbjct: 275 NVVLTPHIGASTVEAQERAGVEVAEKVV 302

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  251 bits (644), Expect = 2e-81
 Identities = 67/315 (21%), Positives = 121/315 (38%), Gaps = 23/315 (7%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG-- 87
           +   +E +    + T  K           + D  D VI Q    W   L           
Sbjct: 59  LRKYLESNGHTLVVTSDKD-GPDSVFERELVD-ADVVISQPF--WPAYLTPERIAKAKNL 114

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +G ++VD+ +A    + V       + + AE    + L+  R  + + E+ R 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARK 174

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G ++     +     L+   VG + AGRIG A  R +   F ++L Y D ++        
Sbjct: 175 GGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR-------- 224

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                 L  + E+ +     ++ +++    DV++L+  L   T H+IN E L   K+ A 
Sbjct: 225 ------LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY 278

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326
           +VN +RG + D  A+   L+   +     DV+  +P  K      M    + PHI+  + 
Sbjct: 279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 338

Query: 327 WTREGMATLAALNVL 341
             +   A      + 
Sbjct: 339 TAQARYAAGTREILE 353

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  248 bits (635), Expect = 9e-81
 Identities = 83/303 (27%), Positives = 128/303 (42%), Gaps = 36/303 (11%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
            + +AL     DGV+     D+      AL+  G    S   VG +N+D+  A + G  +
Sbjct: 38  PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQI 96

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE AA  +    R+    DE +             +G  ++ Q VGV+G
Sbjct: 97  TNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVG 153

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG  + ++M EGF   +I YD+++   LEK                       S+D+
Sbjct: 154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV-----------------DSLDD 195

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + ++ADVISLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASKWTREGMATLAAL 338
              +DV+E E  +                 L    N +V P  A  +      M   A  
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFD 315

Query: 339 NVL 341
           N L
Sbjct: 316 NNL 318

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  243 bits (622), Expect = 7e-79
 Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 37/310 (11%)

Query: 47  KTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106
              L+ ++   +     D VI +      +       + G K       G +++D   A 
Sbjct: 31  PDYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAK 89

Query: 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 166
           + G  +   P       AELA + ++   R             +   +        ++  
Sbjct: 90  ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--VDAFMFSKEVRNC 147

Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           TVGV+G GRIG   A++   G    +I  D+++   +E + T                  
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---------------- 189

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
             S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A++E +
Sbjct: 190 -VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248

Query: 287 KQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKWTREG 331
           +   +   G DV + E               P  +  +      ++ PH+ S +    + 
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKN 308

Query: 332 MATLAALNVL 341
           M  ++  N+ 
Sbjct: 309 MVEVSYQNLK 318

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  240 bits (614), Expect = 3e-78
 Identities = 67/305 (21%), Positives = 122/305 (40%), Gaps = 31/305 (10%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGY 97
           +++         V +I   + D  D        D    +       G   K    ++ G 
Sbjct: 1   LDVYVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGV 60

Query: 98  NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157
           +++DVN   +  +   N     + + AE A +L LA A+ I+E +E M+AG++       
Sbjct: 61  DHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--- 116

Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN 217
               LL G+ +G++G G IG   A +  + F M +I Y                   +  
Sbjct: 117 --TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD-------------QNV 160

Query: 218 GEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277
                      S  ++ R++D + +   L   T  ++N   LA  +K   +VN +R  V+
Sbjct: 161 DVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV 214

Query: 278 DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI-ASASKWTREGMATLA 336
            +  ++  LK+        DV+ +EP  +   + ++NAI+ PH+    S    +    LA
Sbjct: 215 SKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDIAIQLA 272

Query: 337 ALNVL 341
             NV 
Sbjct: 273 FENVR 277

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  237 bits (606), Expect = 4e-76
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 32/309 (10%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGGKAFSNMA 94
           +            ++   I D    +I        +T +              K      
Sbjct: 42  QYIVTDDKEGPDCELEKHIPD-LHVLISTPFHPAYVTAE----RIKKAKNL--KLLLTAG 94

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D+ AA   G+ V    G    + AE      L   R  V     +  G ++   
Sbjct: 95  IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-VA 153

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              +    L+G+T+G +GAGRIG    + +   F  NL+Y+D  Q              +
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ--------------M 198

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
               E+    K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG
Sbjct: 199 APELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG 258

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASKWTREGM 332
            +++  A+V+ ++   +     DV++ +P  K  P    M N  + PH +  +   +   
Sbjct: 259 AIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHP-WRYMPNQAMTPHTSGTTIDAQLRY 317

Query: 333 ATLAALNVL 341
           A      + 
Sbjct: 318 AAGTKDMLE 326

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  234 bits (599), Expect = 3e-75
 Identities = 82/329 (24%), Positives = 136/329 (41%), Gaps = 43/329 (13%)

Query: 29  WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAALS 83
             +LL + + +V       T+  V  + A + D  + ++      ++T      L   L 
Sbjct: 20  CFSLLQDHEVKV----FNNTVKGVGQLAARVAD-VEALVLIRERTRVTRQ----LLDRLP 70

Query: 84  --RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA 141
             +   +          ++D+ A    G+ V    G      AEL  +L +AA RRI + 
Sbjct: 71  KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQY 129

Query: 142 DEFMRAG-------LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              ++ G             PN  +G +LKGQT+G+ G G+IG   A      F MN++ 
Sbjct: 130 VASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVL- 187

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
                          +G+       +   +  A S D +  ++DV+S+H  L+  T  +I
Sbjct: 188 --------------VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII 233

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEM 312
               L  MK  A+ VN SR  +++E  +V  L +       +DVFE EP +  G  L  M
Sbjct: 234 TVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-ILQGHTLLRM 292

Query: 313 KNAIVVPHIASASKWTREGMATLAALNVL 341
           +N I  PHI    + + E    +A  N+L
Sbjct: 293 ENCICTPHIGYVERESYEMYFGIAFQNIL 321

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  233 bits (597), Expect = 5e-75
 Identities = 77/303 (25%), Positives = 130/303 (42%), Gaps = 36/303 (11%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E+ +       DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI +
Sbjct: 36  ENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL 94

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE A + +L   R + +    ++AG Y+      F+G  L  QTVGV+G
Sbjct: 95  SNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--KAGTFIGKELGQQTVGVMG 152

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG    ++  +GF   +I YD Y           Y                  S+++
Sbjct: 153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y-----------------VSLED 193

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + +++DVI LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   + 
Sbjct: 194 LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASKWTREGMATLAAL 338
            VG+D +E E                    L  M N ++ PHIA  ++     M   +  
Sbjct: 254 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQ 313

Query: 339 NVL 341
           +++
Sbjct: 314 HLV 316

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  225 bits (575), Expect = 9e-72
 Identities = 94/321 (29%), Positives = 150/321 (46%), Gaps = 45/321 (14%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
             +L +   +V      K  LS E++IA + D C+G+I     ++T    + + AA    
Sbjct: 40  RKILQDGGLQVVE----KQNLSKEELIAELQD-CEGLIVRSATKVTA---DVINAAEKLQ 91

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            + RAG         G +NVD+ AA + GI V NTP   + + AEL   + +  AR+I +
Sbjct: 92  VVGRAG--------TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQ 143

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           A   M+ G    W    F+G  L G+T+G++G GRIG   A  M + F M  I YD   +
Sbjct: 144 ATASMKDG---KWERKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPIIS 199

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               +   ++G          V       ++E+    D I++H  L  +T  L+N    A
Sbjct: 200 ---PEVSASFG----------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFA 243

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             KK   +VNC+RG ++DE AL+  L+        LDVF +EP     L + +N I  PH
Sbjct: 244 QCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPH 303

Query: 321 IASASKWTREGMATLAALNVL 341
           + +++K  +       A+  +
Sbjct: 304 LGASTKEAQSRCGEEIAVQFV 324

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  222 bits (568), Expect = 7e-71
 Identities = 79/324 (24%), Positives = 149/324 (45%), Gaps = 50/324 (15%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           I  L E+  +V+        +S E+++ +IG+  D ++     ++T+   + +       
Sbjct: 19  IKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTK---DVIEKGKKLK 70

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            ++RAG        +G +N+D   A K  I V   PG  T++  EL   L +AAAR++  
Sbjct: 71  IIARAG--------IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT 122

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           +    ++G    +      G  L G+T+G++G GRIG+    +      M ++ YD+   
Sbjct: 123 SMALAKSG---IF--KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI 176

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               +                       S++E+L+ +DVISLH  + K    +I+  +  
Sbjct: 177 ---REKAEKIN----------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE 220

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIV 317
            MK   I+VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV
Sbjct: 221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIV 280

Query: 318 VPHIASASKWTREGMATLAALNVL 341
             HI + +K  ++ +A +   N+L
Sbjct: 281 TTHIGAQTKEAQKRVAEMTTQNLL 304

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  227 bits (581), Expect = 2e-70
 Identities = 88/309 (28%), Positives = 141/309 (45%), Gaps = 27/309 (8%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 20  ALGDQVEVRW----VDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR 72

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P     + AE A +L LAA+R+I  AD  +R      
Sbjct: 73  AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---T 129

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + F G  + G+TVGV+G GRIG   A+ +   F   ++ YD         +V+    
Sbjct: 130 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--A 178

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                G + ++       D++L  AD IS+H      T  LI+KE LA  K   I+VN +
Sbjct: 179 RAAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 332
           RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH+ +++   ++  
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292

Query: 333 ATLAALNVL 341
            T  A +V 
Sbjct: 293 GTDVAESVR 301

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  215 bits (550), Expect = 1e-67
 Identities = 76/324 (23%), Positives = 127/324 (39%), Gaps = 52/324 (16%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAA-----LSRAGGK 88
            E+ T          +   I D  D +I        +T+   E +  A     +  AG  
Sbjct: 39  HELITTSDKEGGNSVLDQHIPD-ADIIITTPFHPAYITK---ERIDKAKKLKLVVVAG-- 92

Query: 89  AFSNMAVGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
                 VG +++D++  N+ G  I+V    G    + AE      L   R  V A E + 
Sbjct: 93  ------VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQII 146

Query: 147 AGLYDGWLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                 W           ++G+T+  IGAGRIG      +V  F    + Y  YQA   +
Sbjct: 147 NH---DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKD 202

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                         E+ V  +R  +++E++ +AD+++++  L   T  LINKE L+  KK
Sbjct: 203 A-------------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN-----AIV 317
            A LVN +RG +     +   L+   +   G DV+  +P  K  P   +M+N       +
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHP-WRDMRNKYGAGNAM 308

Query: 318 VPHIASASKWTREGMATLAALNVL 341
            PH +  +   +   A      + 
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILE 332

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  211 bits (539), Expect = 2e-65
 Identities = 91/305 (29%), Positives = 131/305 (42%), Gaps = 53/305 (17%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAF 90
              T     L   D+I  I      +      QLTE+    +FAA +             
Sbjct: 38  TNVTHLPKALDKADLIKAISS-AHIIGIRSRTQLTEE----IFAAANRLIAVGCFS---- 88

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
               VG N V++ AA K GI V N P   T + AEL     +   RRI        AG  
Sbjct: 89  ----VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-- 142

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW         ++G+T+G++G G IGS    +  E   M + YYD     +L+      
Sbjct: 143 -GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY----- 193

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
                 N +       A+S+DE+L+ +DV+SLH    K+T  LI + +L  MKK A L+N
Sbjct: 194 -----GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASAS 325
            +RG  +D  AL + L++  +    +DVF  EP          L  ++N I+ PHI   S
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG-GS 301

Query: 326 KWTRE 330
             T E
Sbjct: 302 --TEE 304

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  210 bits (537), Expect = 3e-65
 Identities = 78/302 (25%), Positives = 120/302 (39%), Gaps = 53/302 (17%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAFSNM 93
              K  L  E +   I D    +       LTED    +  A                  
Sbjct: 30  EFHKGALDDEQLKESIRD-AHFIGLRSRTHLTED----VINAAEKLVAIGAFA------- 77

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
            +G N VD++AA K GI V N P   T + AEL     L   R + EA+     G     
Sbjct: 78  -IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VG 133

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                     +G+ +G+IG G IG+    +  E   M + +YD+     L          
Sbjct: 134 NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG--------- 183

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
              N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N SR
Sbjct: 184 ---NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 234

Query: 274 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASASKWT 328
           G V+D  AL + L    +    +DVF  EP          L+E  N ++ PHI   S  T
Sbjct: 235 GTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG-GS--T 291

Query: 329 RE 330
           +E
Sbjct: 292 QE 293

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  202 bits (515), Expect = 6e-63
 Identities = 63/301 (20%), Positives = 108/301 (35%), Gaps = 38/301 (12%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAA 105
           T      + A   D+ + + G         L   L+R     K    ++ G + + + A 
Sbjct: 26  TFKDAAAVTAADYDQIEVMYG-----NHPLLKTILARPTNQLKFVQVISAGVDYLPLKAL 80

Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
              G+ V NT G+  +  +E   +  L+  R    A    R              + L G
Sbjct: 81  QAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---RQWALPMTTSTLTG 137

Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           Q + + G G+IG + A        M++I  +       + F                   
Sbjct: 138 QQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA-------------- 181

Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
             ++  + L  A+ I     L  TT+HL + E     K++ +L+N  RGP +D  AL+  
Sbjct: 182 -FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240

Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALN 339
           L  + +    LDV E EP     L          + ++ PHI+      R  +  + A N
Sbjct: 241 LDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAAN 295

Query: 340 V 340
            
Sbjct: 296 F 296

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  195 bits (497), Expect = 1e-59
 Identities = 66/241 (27%), Positives = 99/241 (41%), Gaps = 49/241 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D++   + GIA  + PG       +      LA A                   
Sbjct: 67  IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L  +T GV+GAG++G     ++  G    ++  D  +  R            
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
                + V      S++ +L EADVISLH       +  T HL+++ RLA ++    LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
            SRG V+D  AL   L+      V LDV+E EP   P L   +  I  PHIA     + E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIA-GY--SLE 261

Query: 331 G 331
           G
Sbjct: 262 G 262

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  191 bits (487), Expect = 5e-58
 Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 49/241 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD     + GI     PG       E   S  L  A R                 
Sbjct: 70  AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L+ +T+G++G G +GS     + E   +  +  D  +A R            
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
             +           ++DE+++EADV++ H          T HL ++  +  +K  AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
             RGPV+D  AL+  L       V LDV+E EP +   L E  + I   HIA     T E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA-GY--TLE 264

Query: 331 G 331
           G
Sbjct: 265 G 265

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  119 bits (301), Expect = 2e-31
 Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 35/228 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
              + N  G+     +E      L+  R++    E  +  L   W         LKG+T+
Sbjct: 89  DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
            ++G G IG   A    + F M ++            F   Y                  
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186

Query: 229 SMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           +++++L +AD ++S+ P   + T+HL    R    K  AIL N  RG  I+E  L+  L+
Sbjct: 187 ALNKMLAQADVIVSVLP-ATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245

Query: 288 QNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTR 329
              +    LDVFE EP     L          N I+ PH ++ S    
Sbjct: 246 TGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAYSFPDD 288

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  113 bits (284), Expect = 4e-29
 Identities = 49/266 (18%), Positives = 84/266 (31%), Gaps = 43/266 (16%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEA 141
           KA   +  G + +         +   + P        +     E A S  L   RR  + 
Sbjct: 61  KAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDY 120

Query: 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
                  L   W P        +  +VG++GAG +G+  A  +   +   L  +      
Sbjct: 121 QALKNQAL---WKP--LPEYTREEFSVGIMGAGVLGAKVAESLQ-AWGFPLRCWS-RSRK 173

Query: 202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLA 260
                 +  G                  +   L +   +I+L P     T  +IN E L 
Sbjct: 174 SWPGVESYVG---------------REELRAFLNQTRVLINLLP-NTAQTVGIINSELLD 217

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKN 314
            +   A ++N +RG  + E  L+  L    +    LDVF  EP     L +         
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-----LPQESPLWRHPR 272

Query: 315 AIVVPHIASASKWTREGMATLAALNV 340
             + PHIA+ +           +  +
Sbjct: 273 VAMTPHIAAVT--RPAEAIDYISRTI 296

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 65.4 bits (159), Expect = 3e-12
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           + G  V V+G GR+G + AR         +                     +   G +P 
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
              +     + LR+ DV             ++    LA M     +++ +  P   +   
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254

Query: 283 VEHLKQNPMFRVGL 296
            E      +   GL
Sbjct: 255 AEKRGIKALLVPGL 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.97
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.91
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.84
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.8
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.79
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.77
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.75
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.73
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.68
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.68
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.36
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.35
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.35
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.32
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.32
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.32
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.32
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.3
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.28
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.27
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.26
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.25
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.25
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.23
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.23
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.19
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.19
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.19
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.16
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.16
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.15
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.15
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.13
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.13
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.12
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.08
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.08
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.03
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.02
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.01
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.0
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.98
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.98
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.96
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.95
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.95
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.93
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.93
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.93
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.93
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.9
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.41
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.88
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.87
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.84
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.83
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.83
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.8
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.79
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.78
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.7
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.69
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.68
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.67
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.67
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.67
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.66
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.64
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.6
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.59
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.57
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.56
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.56
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.47
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.45
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.45
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.44
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.41
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.39
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.38
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.38
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.37
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.36
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.35
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.35
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.34
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.34
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.33
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.33
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.32
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.31
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.31
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.31
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.31
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.3
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.3
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.29
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.29
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.29
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.28
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.27
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.26
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.25
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.23
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.19
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.18
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.17
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.17
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.16
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.15
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.12
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.11
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.11
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.09
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.0
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.99
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.96
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.95
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.95
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.94
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.93
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.91
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.91
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.87
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.86
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.82
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.8
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.76
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.75
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.75
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.74
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.73
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.73
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.72
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.71
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.69
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.65
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.63
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.58
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.57
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.57
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.55
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.54
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.52
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.5
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.47
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.43
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.41
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.41
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.41
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.41
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.39
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.39
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.37
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.36
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.33
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.31
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.31
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.29
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.28
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.27
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.26
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.25
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.25
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.25
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.24
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.23
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.22
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.21
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.19
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.17
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.16
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.13
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.11
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.09
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.08
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.08
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.08
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.06
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.06
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.03
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.03
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.02
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.0
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.99
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.97
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.96
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.95
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.91
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.91
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.9
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.89
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.88
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.87
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.86
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.85
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.82
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.81
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.77
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.73
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.72
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.71
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.69
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.69
4had_A	350	Probable oxidoreductase protein; structural genomi	96.68
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.66
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.65
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.63
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.62
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.62
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.61
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.58
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.54
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.54
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.51
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.49
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.48
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.48
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.47
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.45
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.44
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.42
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.42
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.41
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.39
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.38
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.37
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.34
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.34
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.32
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.28
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.27
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.27
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.27
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.26
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.25
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.25
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.24
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.24
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.22
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.22
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.22
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.21
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.2
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.18
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.17
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.15
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.15
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.14
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.11
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.11
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.1
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.1
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.08
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.07
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.07
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.06
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.05
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.05
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.04
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.04
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.03
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.02
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.99
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.98
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.98
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.97
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.97
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.94
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.91
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.9
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.9
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.9
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.88
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	95.88
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.87
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	95.87
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.86
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.86
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	95.84
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.83
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.82
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.82
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.81
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.8
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.8
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.79
3on5_A	362	BH1974 protein; structural genomics, joint center	95.79
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.78
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.77
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.75
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.74
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.68
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.68
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.67
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.64
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.63
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.62
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.59
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.58
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.57
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.56
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.56
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.53
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.53
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.53
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.53
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.51
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	95.5
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.5
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.49
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.48
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.46
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.44
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.44
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.43
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.43
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.41
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.41
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.39
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.36
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.34
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.33
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.33
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.32
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.31
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	95.3
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.29
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.29
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.26
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.26
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.25
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.25
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.25
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.24
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.23
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.23
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.22
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	95.21
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.2
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.19
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.19
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.17
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.16
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.14
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.12
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.11
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.1
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.09
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.07
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.06
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.05
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.99
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.97
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.95
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	94.94
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.94
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.94
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.91
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.9
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.89
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.88
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.87
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.87
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.8
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.78
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	94.75
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.75
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	94.71
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.71
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.7
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	94.68
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.61
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	94.6
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.56
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.55
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.55
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	94.51
1lnq_A	336	MTHK channels, potassium channel related protein;	94.47
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.3
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.28
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.24
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	94.23
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.22
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.21
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.19
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.15
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.15
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.15
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.12
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	94.08
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.06
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.05
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.05
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.05
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	94.03
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	94.0
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	93.97
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.96
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.95
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.95
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	93.93
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	93.91
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.9
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.9
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.79
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.77
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.74
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	93.74
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.73
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.69
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.64
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	93.63
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.63
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	93.62
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	93.61
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.59
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	93.57
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.55
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.47
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.43
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	93.42
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	93.42
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	93.39
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.24
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.14
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.1
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.06
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	93.04
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	93.02
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	93.02
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	93.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.98
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	92.97
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	92.96
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.88
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.87
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.85
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.84
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	92.79
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.7
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.66
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.63
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.6
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	92.57
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.54
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.52
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.49
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	92.45
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	92.44
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.4
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	92.31
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.28
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.27
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	92.21
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	92.18
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	92.15
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	92.13
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	92.11
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	92.0

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=9.4e-73  Score=541.67  Aligned_cols=307  Identities=28%  Similarity=0.455  Sum_probs=274.3

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHh-hccCCceE
Q 019328           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAF   90 (342)
Q Consensus        12 ~~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~l~~k~i   90 (342)
                      +++++|||++.++++. ..+.|++. +++++. ..+...+++++.+.+. ++|+++++..+++++++++++ |+|  |+|
T Consensus        25 ~~~~~kvlv~~~~~~~-~~~~l~~~-~~v~~~-~~~~~~~~~~l~~~~~-~~d~li~~~~~~i~~~~l~~~~~~L--k~I   98 (345)
T 4g2n_A           25 THPIQKAFLCRRFTPA-IEAELRQR-FDLEVN-LEDTVLTPSGIASRAH-GAEVLFVTATEAITAEVIRKLQPGL--KTI   98 (345)
T ss_dssp             --CCCEEEESSCCCHH-HHHHHHHH-SEEEEC-TTCCCCCHHHHHHHTT-TCSEEEECTTSCBCHHHHHHTTTTC--CEE
T ss_pred             cCCCCEEEEeCCCCHH-HHHHHHcc-CCEEEe-cCCCCCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHHhhcCCc--eEE
Confidence            4578999999999874 45677664 576643 2334578999998887 599999987788999999998 676  999


Q ss_pred             EEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        91 ~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI  170 (342)
                      +++|+|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+++|.|..|.+....|++|+||||||
T Consensus        99 ~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGI  178 (345)
T 4g2n_A           99 ATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGI  178 (345)
T ss_dssp             EESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEE
T ss_pred             EEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999988865555689999999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      ||+|+||+.+|+++ ++|||+|++|||++.+....            .    +.....++++++++||+|++|+|+|++|
T Consensus       179 IGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~------------~----g~~~~~~l~ell~~sDvV~l~~Plt~~T  241 (345)
T 4g2n_A          179 FGMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALE------------E----GAIYHDTLDSLLGASDIFLIAAPGRPEL  241 (345)
T ss_dssp             ESCSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH------------T----TCEECSSHHHHHHTCSEEEECSCCCGGG
T ss_pred             EEeChhHHHHHHHH-HHCCCEEEEECCCCcchhhh------------c----CCeEeCCHHHHHhhCCEEEEecCCCHHH
Confidence            99999999999997 79999999999986432111            0    1223359999999999999999999999


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHH
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE  330 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~  330 (342)
                      +++|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.++++
T Consensus       242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~  321 (345)
T 4g2n_A          242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRD  321 (345)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHH
T ss_pred             HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999777899999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 019328          331 GMATLAALNVL  341 (342)
Q Consensus       331 ~~~~~~~~ni~  341 (342)
                      +|...+++||.
T Consensus       322 ~~~~~~~~ni~  332 (345)
T 4g2n_A          322 AMGWLLIQGIE  332 (345)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999984

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.6e-71  Score=532.04  Aligned_cols=297  Identities=29%  Similarity=0.395  Sum_probs=255.1

Q ss_pred             eEEEEeCCCCch-H-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           16 YRVVSTKPMPGT-R-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        16 ~kvl~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      ||||++....+. . +.+.+++.+  +++...+....+++++.     ++|+++++..+++++++++++|+|  |+|+++
T Consensus         1 Mkil~~~~~~~~~p~~~e~l~~~~--~~~~~~~~~~~~~~~l~-----~ad~i~v~~~~~i~~~~l~~~p~L--k~I~~~   71 (334)
T 3kb6_A            1 MNVLFTSVPQEDVPFYQEALKDLS--LKIYTTDVSKVPENELK-----KAELISVFVYDKLTEELLSKMPRL--KLIHTR   71 (334)
T ss_dssp             -CEEECSCCTTHHHHHHHHTTTSC--EEECSSCGGGSCHHHHH-----HCSEEEECTTSCBCHHHHHTCTTC--CEEEES
T ss_pred             CEEEEeCCCcccCHHHHHHHHhCC--cEEEeCCcccCCHHHhc-----CCCEEEEeCCCCCCHHHHhcCCCC--cEEEEC
Confidence            678887533321 1 334454444  44433332334455543     489999988889999999999997  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~  173 (342)
                      |+|+||||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.  ...|++|+|||+||||+
T Consensus        72 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~--~~~~~~l~g~tvGIiG~  149 (334)
T 3kb6_A           72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDS--EILARELNRLTLGVIGT  149 (334)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCG--GGCBCCGGGSEEEEECC
T ss_pred             CcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccccccccccccccccc--ccccceecCcEEEEECc
Confidence            9999999999999999999999999999999999999999999999999999999986554  34678999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019328          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~l  253 (342)
                      |+||+.+|+++ ++|||+|++|||+.+.....                . .....++++++++||+|++|||+|++|+||
T Consensus       150 G~IG~~va~~~-~~fg~~v~~~d~~~~~~~~~----------------~-~~~~~~l~ell~~sDivslh~Plt~~T~~l  211 (334)
T 3kb6_A          150 GRIGSRVAMYG-LAFGMKVLCYDVVKREDLKE----------------K-GCVYTSLDELLKESDVISLHVPYTKETHHM  211 (334)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH----------------T-TCEECCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             chHHHHHHHhh-cccCceeeecCCccchhhhh----------------c-CceecCHHHHHhhCCEEEEcCCCChhhccC
Confidence            99999999996 89999999999987543211                0 113469999999999999999999999999


Q ss_pred             cCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-C---------------CccCCCceEE
Q 019328          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P---------------GLSEMKNAIV  317 (342)
Q Consensus       254 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~---------------~L~~~~nvi~  317 (342)
                      ||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||++||++. +               |||++|||++
T Consensus       212 i~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvil  291 (334)
T 3kb6_A          212 INEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII  291 (334)
T ss_dssp             BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEE
T ss_pred             cCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEE
Confidence            99999999999999999999999999999999999999999999999999642 2               6899999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          318 VPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      |||+||+|.++++++...+++||.
T Consensus       292 TPHia~~T~ea~~~~~~~~~~ni~  315 (334)
T 3kb6_A          292 TPHIAYYTDKSLERIREETVKVVK  315 (334)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             CCchhhChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999984

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=9.5e-70  Score=519.14  Aligned_cols=304  Identities=30%  Similarity=0.446  Sum_probs=271.1

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      ++|||++.++++. ..+.|++.+ ++.+. ......+++++.+.+. ++|+++++..+++++++++++|+|  |+|++.|
T Consensus         2 ~~kvlv~~~~~~~-~~~~l~~~~-~v~~~-~~~~~~~~~~~~~~~~-~~d~~i~~~~~~i~~~~l~~~~~L--k~I~~~~   75 (330)
T 4e5n_A            2 LPKLVITHRVHEE-ILQLLAPHC-ELITN-QTDSTLTREEILRRCR-DAQAMMAFMPDRVDADFLQACPEL--RVIGCAL   75 (330)
T ss_dssp             CCEEEECSCCCHH-HHHHHTTTC-EEECC-CSSSCCCHHHHHHHHT-TCSEEEECTTCCBCHHHHHHCTTC--CEEEESS
T ss_pred             CCEEEEecCCCHH-HHHHHHhCC-eEEEe-cCCCCCCHHHHHHHhC-CCeEEEEeCCCCCCHHHHhhCCCC--cEEEECC
Confidence            6789999998874 467887665 66532 2334568899998887 599999977789999999999987  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G  174 (342)
                      +|+||||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.+ ...|++|+|+||||||+|
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~tvGIIG~G  154 (330)
T 4e5n_A           76 KGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMG  154 (330)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCS-CCCCCCSTTCEEEEECCS
T ss_pred             CcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCc-cccCCccCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999999988876 346889999999999999


Q ss_pred             hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019328          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       175 ~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li  254 (342)
                      +||+.+|+++ ++|||+|++|||++......  ..+            +. ...++++++++||+|++|+|+|++|+++|
T Consensus       155 ~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~--~~~------------g~-~~~~l~ell~~aDvV~l~~P~t~~t~~li  218 (330)
T 4e5n_A          155 AIGLAMADRL-QGWGATLQYHEAKALDTQTE--QRL------------GL-RQVACSELFASSDFILLALPLNADTLHLV  218 (330)
T ss_dssp             HHHHHHHHHT-TTSCCEEEEECSSCCCHHHH--HHH------------TE-EECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCCcHhHH--Hhc------------Cc-eeCCHHHHHhhCCEEEEcCCCCHHHHHHh
Confidence            9999999996 89999999999987321111  001            11 23589999999999999999999999999


Q ss_pred             CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCC-------CCC-CCCccCCCceEEcCCCCCCcH
Q 019328          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-------PYM-KPGLSEMKNAIVVPHIASASK  326 (342)
Q Consensus       255 ~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E-------P~~-~~~L~~~~nvi~TPHia~~t~  326 (342)
                      +++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++|       |++ ++|||++|||++|||+||+|.
T Consensus       219 ~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~  298 (330)
T 4e5n_A          219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVR  298 (330)
T ss_dssp             CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCH
T ss_pred             CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChH
Confidence            999999999999999999999999999999999999999999999999       964 579999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 019328          327 WTREGMATLAALNVL  341 (342)
Q Consensus       327 ~~~~~~~~~~~~ni~  341 (342)
                      +++++|...+++||.
T Consensus       299 e~~~~~~~~~~~ni~  313 (330)
T 4e5n_A          299 AVRLEIERCAAQNIL  313 (330)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999984

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=3.7e-69  Score=526.15  Aligned_cols=303  Identities=29%  Similarity=0.386  Sum_probs=266.6

Q ss_pred             eCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCc
Q 019328           10 WNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGK   88 (342)
Q Consensus        10 ~~~~~~~kvl~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k   88 (342)
                      +.|+.++||++++.+++. ..+.|++.++ +++...   ...+++++.+.+. ++|+++++..+++++++++++|+|  |
T Consensus        10 ~~~~~~~kIl~~~~i~~~-~~~~l~~~g~~~v~~~~---~~~~~~~l~~~~~-~~d~l~v~~~~~i~~~~l~~~p~L--k   82 (416)
T 3k5p_A           10 SLSRDRINVLLLEGISQT-AVEYFKSSGYTNVTHLP---KALDKADLIKAIS-SAHIIGIRSRTQLTEEIFAAANRL--I   82 (416)
T ss_dssp             --CGGGSCEEECSCCCHH-HHHHHHHTTCCCEEECS---SCCCHHHHHHHHT-TCSEEEECSSCCBCHHHHHHCTTC--C
T ss_pred             CCCCCCcEEEEECCCCHH-HHHHHHHCCCcEEEECC---CCCCHHHHHHHcc-CCEEEEEcCCCCCCHHHHHhCCCc--E
Confidence            467779999999998864 4678888887 776532   3468899999887 499998888889999999999997  9


Q ss_pred             eEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 019328           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (342)
Q Consensus        89 ~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktv  168 (342)
                      +|+++|+|+||||+++|+++||.|+|+||+|+++||||++++||+++|++..+++.+++|.|..+   ...+.+++|||+
T Consensus        83 ~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~---~~~~~el~gktv  159 (416)
T 3k5p_A           83 AVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT---AIGSREVRGKTL  159 (416)
T ss_dssp             EEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CTTCCCSTTCEE
T ss_pred             EEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhccccccc---CCCCccCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999988643   234689999999


Q ss_pred             EEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCc
Q 019328          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (342)
Q Consensus       169 GIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~  248 (342)
                      ||||+|+||+.+|+++ ++|||+|++||++.....                  .......++++++++||+|++|+|+|+
T Consensus       160 GIIGlG~IG~~vA~~l-~~~G~~V~~yd~~~~~~~------------------~~~~~~~sl~ell~~aDvV~lhvPlt~  220 (416)
T 3k5p_A          160 GIVGYGNIGSQVGNLA-ESLGMTVRYYDTSDKLQY------------------GNVKPAASLDELLKTSDVVSLHVPSSK  220 (416)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECTTCCCCB------------------TTBEECSSHHHHHHHCSEEEECCCC--
T ss_pred             EEEeeCHHHHHHHHHH-HHCCCEEEEECCcchhcc------------------cCcEecCCHHHHHhhCCEEEEeCCCCH
Confidence            9999999999999996 799999999999753210                  012235799999999999999999999


Q ss_pred             ccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-----CCccCCCceEEcCCCCC
Q 019328          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       249 ~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvi~TPHia~  323 (342)
                      +|+++|+++.|++||+|++|||+|||+++|++||++||++|+|+||+||||++||++.     +|||++|||++|||+||
T Consensus       221 ~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~  300 (416)
T 3k5p_A          221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGG  300 (416)
T ss_dssp             ---CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTT
T ss_pred             HHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999753     58999999999999999


Q ss_pred             CcHHHHHHHHHHHHhhhc
Q 019328          324 ASKWTREGMATLAALNVL  341 (342)
Q Consensus       324 ~t~~~~~~~~~~~~~ni~  341 (342)
                      +|.|++++++..+++|+.
T Consensus       301 ~T~ea~~~~~~~~~~nl~  318 (416)
T 3k5p_A          301 STEEAQERIGTEVTRKLV  318 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999999984

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.8e-70  Score=521.38  Aligned_cols=301  Identities=29%  Similarity=0.419  Sum_probs=237.8

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEE
Q 019328           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        12 ~~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~   91 (342)
                      +|+++|||++.++++. ..+.|++ ++++.....   ..+++++.+.+. ++|+++++..+++++++++++|+|  |+|+
T Consensus        27 ~~~~~~vl~~~~~~~~-~~~~L~~-~~~v~~~~~---~~~~~~~~~~~~-~~d~li~~~~~~i~~~~l~~~p~L--k~I~   98 (340)
T 4dgs_A           27 RNVKPDLLLVEPMMPF-VMDELQR-NYSVHRLYQ---AADRPALEAALP-SIRAVATGGGAGLSNEWMEKLPSL--GIIA   98 (340)
T ss_dssp             ------CEECSCCCHH-HHHTHHH-HSCCEETTC---GGGHHHHHHHGG-GCCEEEEETTTCBCHHHHHHCSSC--CEEE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHhc-CCcEEEeCC---CCCHHHHHHHhC-CcEEEEEcCCCCCCHHHHhhCCCC--EEEE
Confidence            4578899999999874 4567755 455553321   235778877775 699999987788999999999987  9999


Q ss_pred             EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 019328           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIi  171 (342)
                      +.|+|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+|+|.|..+. ....|++|+|||||||
T Consensus        99 ~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~gktiGII  177 (340)
T 4dgs_A           99 INGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGE-QLPLGHSPKGKRIGVL  177 (340)
T ss_dssp             EESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCCCCCTTCEEEEE
T ss_pred             ECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCccccc-CcCccccccCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999986531 1235789999999999


Q ss_pred             ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019328          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~  251 (342)
                      |+|+||+.+|+++ ++|||+|++|||++...                   .......++++++++||+|++|+|+|++|+
T Consensus       178 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~~~~~~~sl~ell~~aDvVil~vP~t~~t~  237 (340)
T 4dgs_A          178 GLGQIGRALASRA-EAFGMSVRYWNRSTLSG-------------------VDWIAHQSPVDLARDSDVLAVCVAASAATQ  237 (340)
T ss_dssp             CCSHHHHHHHHHH-HTTTCEEEEECSSCCTT-------------------SCCEECSSHHHHHHTCSEEEECC-------
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCcccc-------------------cCceecCCHHHHHhcCCEEEEeCCCCHHHH
Confidence            9999999999997 79999999999986531                   112235689999999999999999999999


Q ss_pred             cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      ++++++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||++++|||++|||++|||+||+|.+++++
T Consensus       238 ~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~  317 (340)
T 4dgs_A          238 NIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMA  317 (340)
T ss_dssp             ---CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHH
T ss_pred             HHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      |...+++||.
T Consensus       318 ~~~~~~~nl~  327 (340)
T 4dgs_A          318 MGKLVLANLA  327 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=1.9e-68  Score=522.35  Aligned_cols=301  Identities=25%  Similarity=0.343  Sum_probs=260.7

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceE
Q 019328           12 PNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (342)
Q Consensus        12 ~~~~~kvl~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i   90 (342)
                      |+.||||++++++++. ..+.|++.++ ++++..   ...+++++.+.+. ++|++++++.+++++++++++|+|  |+|
T Consensus         1 ~~~~~kil~~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~l~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L--k~I   73 (404)
T 1sc6_A            1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFHK---GALDDEQLKESIR-DAHFIGLRSRTHLTEDVINAAEKL--VAI   73 (404)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEECS---SCCCHHHHHHHTT-SCSEEEECSSCCBCHHHHHHCSSC--CEE
T ss_pred             CCCceEEEEeCCCCHH-HHHHHHhCCCcEEEEcC---CCCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--cEE
Confidence            4567899999888764 4677877777 676532   2467899988887 599999888889999999999997  999


Q ss_pred             EEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        91 ~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI  170 (342)
                      +++|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|..+   .+.|.+|+|||+||
T Consensus        74 ~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~---~~~~~el~gktlGi  150 (404)
T 1sc6_A           74 GAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL---AAGSFEARGKKLGI  150 (404)
T ss_dssp             EECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEE
T ss_pred             EECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc---CCCccccCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999999988532   23578999999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      ||+|+||+.+|+++ ++|||+|++|||+....                 .. +.....++++++++||+|++|+|+|++|
T Consensus       151 IGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~-----------------~~-~~~~~~~l~ell~~aDvV~l~~P~t~~t  211 (404)
T 1sc6_A          151 IGYGHIGTQLGILA-ESLGMYVYFYDIENKLP-----------------LG-NATQVQHLSDLLNMSDVVSLHVPENPST  211 (404)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCCC-----------------CT-TCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred             EeECHHHHHHHHHH-HHCCCEEEEEcCCchhc-----------------cC-CceecCCHHHHHhcCCEEEEccCCChHH
Confidence            99999999999997 79999999999975421                 00 1223468999999999999999999999


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-----CCCccCCCceEEcCCCCCCc
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIASAS  325 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-----~~~L~~~~nvi~TPHia~~t  325 (342)
                      +++|+++.|++||+|++|||+|||+++|+++|+++|++|+++||+||||++||++     ++|||++|||++|||+|++|
T Consensus       212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T  291 (404)
T 1sc6_A          212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST  291 (404)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCS
T ss_pred             HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999975     35999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 019328          326 KWTREGMATLAALNVL  341 (342)
Q Consensus       326 ~~~~~~~~~~~~~ni~  341 (342)
                      .+++++++..+++|+.
T Consensus       292 ~ea~~~~~~~~~~nl~  307 (404)
T 1sc6_A          292 QEAQENIGLEVAGKLI  307 (404)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999984

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=1.4e-68  Score=512.32  Aligned_cols=301  Identities=27%  Similarity=0.409  Sum_probs=258.2

Q ss_pred             CeEEEEeCCCCc-hHHHHH-HHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHH-HHHHhhccCCceEE
Q 019328           15 KYRVVSTKPMPG-TRWINL-LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET-LFAALSRAGGKAFS   91 (342)
Q Consensus        15 ~~kvl~~~~~~~-~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~~l~~k~i~   91 (342)
                      ||||++....+. ..+.+. +++.++++.....   ..+ +++.+.+. ++|+++++..++++++ +++++|+.++|+|+
T Consensus         1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~-~~~~~~~~-~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~   75 (343)
T 2yq5_A            1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQ---ALT-SATVDLAE-GCSSVSLKPLGPVDEEVVYQKLSEYGVKCIG   75 (343)
T ss_dssp             -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESS---CCS-TTGGGGGT-TCSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEEecCcccHHHHHHHHHhCCeEEEECCC---CCC-HHHHHHhc-CCcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence            478888764333 233443 3456777765432   223 45566666 5999999877899999 99999875669999


Q ss_pred             EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHH-cCCCCCCCCCcccccccCCCEEEE
Q 019328           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR-AGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~-~g~w~~w~~~~~~g~~l~gktvGI  170 (342)
                      +.|+|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.++ +|.|. |.. ...|++|+||||||
T Consensus        76 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~-~~~~~~l~gktvgI  153 (343)
T 2yq5_A           76 LRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPS-NLISNEIYNLTVGL  153 (343)
T ss_dssp             ESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCG-GGCBCCGGGSEEEE
T ss_pred             ECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-ccc-CCCccccCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 99885 743 35678999999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      ||+|.||+.+|+++ ++|||+|++|||++.+..+             .    . ....++++++++||+|++|+|+|++|
T Consensus       154 iGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~-------------~----~-~~~~~l~ell~~aDvV~l~~Plt~~t  214 (343)
T 2yq5_A          154 IGVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFE-------------P----F-LTYTDFDTVLKEADIVSLHTPLFPST  214 (343)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCGGGT-------------T----T-CEECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EecCHHHHHHHHHH-hhCCCEEEEECCChhhhhh-------------c----c-ccccCHHHHHhcCCEEEEcCCCCHHH
Confidence            99999999999997 7999999999998754110             0    1 12359999999999999999999999


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CC------------CCccCCCceE
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK------------PGLSEMKNAI  316 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~------------~~L~~~~nvi  316 (342)
                      +++|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||+  +.            +|||++|||+
T Consensus       215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvi  294 (343)
T 2yq5_A          215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVV  294 (343)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEE
T ss_pred             HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEE
Confidence            999999999999999999999999999999999999999999999999999993  33            2799999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          317 VVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       317 ~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      +|||+|++|.+++++|...+++||.
T Consensus       295 lTPHia~~t~ea~~~~~~~~~~ni~  319 (343)
T 2yq5_A          295 ITPHSAFYTETSIRNMVQICLTDQL  319 (343)
T ss_dssp             ECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             ECCccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999984

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.5e-67  Score=506.95  Aligned_cols=292  Identities=22%  Similarity=0.248  Sum_probs=256.4

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CcCccHHHHHHhhccCCceEEEcccccCccChhHHH
Q 019328           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~  106 (342)
                      ..+.|++.|+++.+.....  .+.+++.+.+. ++|++|++.  ..++++++++++|+|  |+|++.|+|+||||+++|+
T Consensus        32 ~~~~L~~~g~ev~~~~~~~--~~~~~~~~~~~-~ad~li~~~~~~~~~~~~~l~~~p~L--k~i~~~g~G~d~id~~~a~  106 (351)
T 3jtm_A           32 IRDWLESQGHQYIVTDDKE--GPDCELEKHIP-DLHVLISTPFHPAYVTAERIKKAKNL--KLLLTAGIGSDHIDLQAAA  106 (351)
T ss_dssp             CHHHHHHTTCEEEEESCCS--STTSHHHHHTT-TCSEEEECTTSCCCBCHHHHHHCSSC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEeCCCC--CCHHHHHHHhC-CCEEEEEccCCCCCCCHHHHhhCCCC--eEEEEeCeeecccCHHHHH
Confidence            4677888899987654332  25568888887 599999864  356899999999987  9999999999999999999


Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      ++||.|+|+||+|+.+||||++++||++.|++..+++.+++|.|... .....+++|+|+||||||+|+||+.+|+++ +
T Consensus       107 ~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIG~G~IG~~vA~~l-~  184 (351)
T 3jtm_A          107 AAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVA-GIAYRAYDLEGKTIGTVGAGRIGKLLLQRL-K  184 (351)
T ss_dssp             HTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHH-HHHTTCCCSTTCEEEEECCSHHHHHHHHHH-G
T ss_pred             hcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccc-cccCCcccccCCEEeEEEeCHHHHHHHHHH-H
Confidence            99999999999999999999999999999999999999999988521 111236799999999999999999999997 7


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCc
Q 019328          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (342)
Q Consensus       187 a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~ga  266 (342)
                      +|||+|++|||++.+....  ..            .+.....++++++++||+|++|+|+|++|+++|+++.|+.||+|+
T Consensus       185 ~~G~~V~~~dr~~~~~~~~--~~------------~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga  250 (351)
T 3jtm_A          185 PFGCNLLYHDRLQMAPELE--KE------------TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGV  250 (351)
T ss_dssp             GGCCEEEEECSSCCCHHHH--HH------------HCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTE
T ss_pred             HCCCEEEEeCCCccCHHHH--Hh------------CCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCC
Confidence            9999999999986332111  00            112234689999999999999999999999999999999999999


Q ss_pred             EEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       267 ilIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      +|||+|||+++|++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.+++.++...+++|+.
T Consensus       251 ilIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~  326 (351)
T 3jtm_A          251 LIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLE  326 (351)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHH
T ss_pred             EEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999764 79999999999999999999999999999999974

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=5.3e-68  Score=505.26  Aligned_cols=294  Identities=20%  Similarity=0.238  Sum_probs=254.8

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHH-HHhhccCCceEEEc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLF-AALSRAGGKAFSNM   93 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~~l~~k~i~~~   93 (342)
                      |+|||++.++++ ++.+.|++.++++++....+  .+.++    +. ++|+++++.. ++ ++++ +++|+|  |+|++.
T Consensus         1 m~kil~~~~~~~-~~~~~L~~~~~~~~~~~~~~--~~~~~----~~-~ad~l~~~~~-~~-~~~l~~~~~~L--k~I~~~   68 (324)
T 3evt_A            1 MSLVLMAQATKP-EQLQQLQTTYPDWTFKDAAA--VTAAD----YD-QIEVMYGNHP-LL-KTILARPTNQL--KFVQVI   68 (324)
T ss_dssp             -CEEEECSCCCH-HHHHHHHHHCTTCEEEETTS--CCTTT----GG-GEEEEESCCT-HH-HHHHHSTTCCC--CEEECS
T ss_pred             CcEEEEecCCCH-HHHHHHHhhCCCeEEecCCc--cChHH----hC-CcEEEEECCc-Ch-HHHHHhhCCCc--eEEEEC
Confidence            478999999987 46788888776554432221  23333    23 5898887643 46 8888 678987  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHH-HHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA-DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~-~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG  172 (342)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+ ++.+++|.|....    .+++|+||||||||
T Consensus        69 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~~l~gktvGIiG  144 (324)
T 3evt_A           69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TTSTLTGQQLLIYG  144 (324)
T ss_dssp             SSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CCCCSTTCEEEEEC
T ss_pred             CccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CCccccCCeEEEEC
Confidence            999999999999999999999999999999999999999999999999 9999999875421    47899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~  252 (342)
                      +|.||+.+|+++ ++|||+|++|||++....              . .. ......++++++++||+|++|+|+|++|++
T Consensus       145 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~-~~-~~~~~~~l~ell~~aDvV~l~lPlt~~t~~  207 (324)
T 3evt_A          145 TGQIGQSLAAKA-SALGMHVIGVNTTGHPAD--------------H-FH-ETVAFTATADALATANFIVNALPLTPTTHH  207 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEEESSCCCCT--------------T-CS-EEEEGGGCHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HhCCCEEEEECCCcchhH--------------h-Hh-hccccCCHHHHHhhCCEEEEcCCCchHHHH
Confidence            999999999997 799999999999865310              0 00 012246899999999999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      +|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||++ ++|||++|||++|||+||.|.+++++
T Consensus       208 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~  287 (324)
T 3evt_A          208 LFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRAT  287 (324)
T ss_dssp             CBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHH
T ss_pred             hcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999976 47999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +...+++||.
T Consensus       288 ~~~~~~~nl~  297 (324)
T 3evt_A          288 VFPIFAANFA  297 (324)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=6.3e-67  Score=503.08  Aligned_cols=303  Identities=27%  Similarity=0.391  Sum_probs=263.0

Q ss_pred             CeEEEEeCCCCchH----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEe-cCCcCccHHHHHHhhccCCce
Q 019328           15 KYRVVSTKPMPGTR----WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-QLTEDWGETLFAALSRAGGKA   89 (342)
Q Consensus        15 ~~kvl~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~-~~~~~~~~~~~~~~~~l~~k~   89 (342)
                      +|||++.+.+....    ..+.++  +++++++..  ...+++++.+.+. ++|++++ +...++++++++++|+|  |+
T Consensus         2 smki~~~d~~~~~~~~~~~~~~l~--~~~v~~~~~--~~~~~~~l~~~~~-~ad~li~~~~~~~~~~~~l~~~~~L--k~   74 (352)
T 3gg9_A            2 SLKIAVLDDYQDAVRKLDCFSLLQ--DHEVKVFNN--TVKGVGQLAARVA-DVEALVLIRERTRVTRQLLDRLPKL--KI   74 (352)
T ss_dssp             CCEEEECCCTTCCGGGSGGGGGGT--TSEEEECCS--CCCSHHHHHHHTT-TCSEEEECTTSSCBCHHHHTTCTTC--CE
T ss_pred             ceEEEEEcCccccchhhhhhhhhc--CceEEEecC--CCCCHHHHHHHhc-CCeEEEEeCCCCCCCHHHHhhCCCC--eE
Confidence            37899887765421    112332  467765432  2347888988887 5999998 56678999999999987  99


Q ss_pred             EEEccccc----CccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC-------CCCCcc
Q 019328           90 FSNMAVGY----NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-------WLPNLF  158 (342)
Q Consensus        90 i~~~g~G~----d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~-------w~~~~~  158 (342)
                      |++.|+|+    |+||+++|+++||.|+|+||+ +.+||||++++||++.|++..+++.+++|.|..       |.+...
T Consensus        75 I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~  153 (352)
T 3gg9_A           75 ISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFG  153 (352)
T ss_dssp             EEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTT
T ss_pred             EEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccc
Confidence            99999999    999999999999999999999 999999999999999999999999999999964       433334


Q ss_pred             cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .|++|+||||||||+|.||+.+|+++ ++|||+|++|||+.+.....   .            .+.....++++++++||
T Consensus       154 ~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~g~~~~~~l~ell~~aD  217 (352)
T 3gg9_A          154 IGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVLVWGRENSKERAR---A------------DGFAVAESKDALFEQSD  217 (352)
T ss_dssp             SBCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSHHHHHHHH---H------------TTCEECSSHHHHHHHCS
T ss_pred             cCccCCCCEEEEEeECHHHHHHHHHH-HhCCCEEEEECCCCCHHHHH---h------------cCceEeCCHHHHHhhCC
Confidence            57899999999999999999999997 79999999999986432110   0            11223459999999999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEE
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIV  317 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~  317 (342)
                      +|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||++ ++|||++|||++
T Consensus       218 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvil  297 (352)
T 3gg9_A          218 VLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC  297 (352)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEE
T ss_pred             EEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999986 589999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          318 VPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      |||+||.|.++++++...+++||.
T Consensus       298 TPHia~~t~e~~~~~~~~~~~ni~  321 (352)
T 3gg9_A          298 TPHIGYVERESYEMYFGIAFQNIL  321 (352)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999984

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.6e-67  Score=499.93  Aligned_cols=293  Identities=23%  Similarity=0.259  Sum_probs=255.3

Q ss_pred             CCeEEEEeCCCCchHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328           14 GKYRVVSTKPMPGTRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~   92 (342)
                      .||||+++.+..+ .|.+.| ++..+++++...    .+.+++.+.+. ++|++++..  ++++++++++|+|  |+|++
T Consensus         4 ~~mkili~~~~~~-~~~~~L~~~~~p~~~~~~~----~~~~~~~~~~~-~ad~li~~~--~~~~~~l~~~~~L--k~I~~   73 (324)
T 3hg7_A            4 SQRTLLLLSQDNA-HYERLLKAAHLPHLRILRA----DNQSDAEKLIG-EAHILMAEP--ARAKPLLAKANKL--SWFQS   73 (324)
T ss_dssp             CCEEEEEESTTHH-HHHHHHHHSCCTTEEEEEC----SSHHHHHHHGG-GCSEEEECH--HHHGGGGGGCTTC--CEEEE
T ss_pred             cccEEEEecCCCH-HHHHHHhhccCCCeEEEeC----CChhHHHHHhC-CCEEEEECC--CCCHHHHhhCCCc--eEEEE
Confidence            3589999998875 578888 666667765433    24677777777 599999853  4567788889987  99999


Q ss_pred             cccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 019328           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG  172 (342)
                      .|+|+|+||++++++ ||.|+|+||+++.+||||++++||++.|++..+++.+++|.|...     .+++|+|+||||||
T Consensus        74 ~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~tvGIIG  147 (324)
T 3hg7_A           74 TYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH-----PYQGLKGRTLLILG  147 (324)
T ss_dssp             SSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCEEEEEC
T ss_pred             CCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC-----CCcccccceEEEEE
Confidence            999999999998865 999999999999999999999999999999999999999988532     35799999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~  252 (342)
                      +|.||+.+|+++ ++|||+|++|||++....              . . .......++++++++||+|++|+|+|++|++
T Consensus       148 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~-~-~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~  210 (324)
T 3hg7_A          148 TGSIGQHIAHTG-KHFGMKVLGVSRSGRERA--------------G-F-DQVYQLPALNKMLAQADVIVSVLPATRETHH  210 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCCT--------------T-C-SEEECGGGHHHHHHTCSEEEECCCCCSSSTT
T ss_pred             ECHHHHHHHHHH-HhCCCEEEEEcCChHHhh--------------h-h-hcccccCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            999999999997 799999999999864310              0 0 0112346899999999999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      +|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.+  ++
T Consensus       211 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~  288 (324)
T 3hg7_A          211 LFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DD  288 (324)
T ss_dssp             SBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HH
T ss_pred             HhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HH
Confidence            99999999999999999999999999999999999999999999999999976 4799999999999999999976  47


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +...+++|+.
T Consensus       289 ~~~~~~~nl~  298 (324)
T 3hg7_A          289 VAQIFVRNYI  298 (324)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-65  Score=491.54  Aligned_cols=302  Identities=28%  Similarity=0.437  Sum_probs=265.7

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEE
Q 019328           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        12 ~~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~   91 (342)
                      ++.++||+++.++++. ..+.+++.++++....    ..+.+++.+.+. ++|+++++..+++++++++++|+|  |+|+
T Consensus        23 ~~~~~~vli~~~~~~~-~~~~l~~~~~~v~~~~----~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~   94 (335)
T 2g76_A           23 MANLRKVLISDSLDPC-CRKILQDGGLQVVEKQ----NLSKEELIAELQ-DCEGLIVRSATKVTADVINAAEKL--QVVG   94 (335)
T ss_dssp             ---CCEEEECSCCCHH-HHHHHHHHTCEEEECC----SCCHHHHHHHGG-GCSEEEECSSSCBCHHHHHHCSSC--CEEE
T ss_pred             hccceEEEEcCCCCHH-HHHHHHhCCCEEEECC----CCCHHHHHHHhc-CceEEEEcCCCCCCHHHHhhCCCC--cEEE
Confidence            4556789999887753 4667777667765422    246888888887 599999887778999999999987  9999


Q ss_pred             EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 019328           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIi  171 (342)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..   ....+.+++|+|||||
T Consensus        95 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~~~~l~g~tvgII  171 (335)
T 2g76_A           95 RAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER---KKFMGTELNGKTLGIL  171 (335)
T ss_dssp             ESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCT---GGGCBCCCTTCEEEEE
T ss_pred             ECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCc---cCCCCcCCCcCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999998752   2235789999999999


Q ss_pred             ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019328          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~  251 (342)
                      |+|.||+.+|+++ ++|||+|++|||+..+...   ..+            +.. ..++++++++||+|++|+|++++|+
T Consensus       172 GlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~---~~~------------g~~-~~~l~ell~~aDvV~l~~P~t~~t~  234 (335)
T 2g76_A          172 GLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASF------------GVQ-QLPLEEIWPLCDFITVHTPLLPSTT  234 (335)
T ss_dssp             CCSHHHHHHHHHH-HTTTCEEEEECSSSCHHHH---HHT------------TCE-ECCHHHHGGGCSEEEECCCCCTTTT
T ss_pred             eECHHHHHHHHHH-HHCCCEEEEECCCcchhhh---hhc------------Cce-eCCHHHHHhcCCEEEEecCCCHHHH
Confidence            9999999999997 7999999999998754211   111            111 2589999999999999999999999


Q ss_pred             cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      ++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+++++
T Consensus       235 ~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~  314 (335)
T 2g76_A          235 GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSR  314 (335)
T ss_dssp             TSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHH
T ss_pred             HhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997778999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +...+++|+.
T Consensus       315 ~~~~~~~nl~  324 (335)
T 2g76_A          315 CGEEIAVQFV  324 (335)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=1.2e-66  Score=502.21  Aligned_cols=306  Identities=21%  Similarity=0.287  Sum_probs=248.6

Q ss_pred             EEeCCCCCeEEEEeCCCCch-------HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHH
Q 019328            8 EVWNPNGKYRVVSTKPMPGT-------RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (342)
Q Consensus         8 ~~~~~~~~~kvl~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~   80 (342)
                      +++-+++.+++++..+.+..       ...+.|++. +++....    ..+.+++.+.+..++++++.  ..++++++++
T Consensus        20 ~~~m~~~~r~ivll~~~~~~~~~~~~~~~~~~L~~~-~~v~~~~----~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~   92 (365)
T 4hy3_A           20 FQSMTNTERPLAISAPEPRSLDLIFSDEARAALHSK-YEIVEAD----PENIAGLGDDILGRARYIIG--QPPLSAETLA   92 (365)
T ss_dssp             --------CCEEEEECTTSCHHHHCCHHHHHHHHHH-SEEEECC----GGGGGGSCTTHHHHEEEEEE--CCCCCHHHHT
T ss_pred             hhhcccCCCCEEEEcCCcccccccCCHHHHHHHhCC-cEEEECC----CCChHHHHHHhhCCeEEEEe--CCCCCHHHHh
Confidence            34545556677776655331       235667665 5664321    22344544332224777774  3589999999


Q ss_pred             HhhccCCceEEEc-ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC-cc
Q 019328           81 ALSRAGGKAFSNM-AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN-LF  158 (342)
Q Consensus        81 ~~~~l~~k~i~~~-g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~-~~  158 (342)
                      ++|+|  |+|++. |+|||+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.|. |... ..
T Consensus        93 ~~p~L--k~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~  169 (365)
T 4hy3_A           93 RMPAL--RSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTEL-WGGEGNA  169 (365)
T ss_dssp             TCTTC--CEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCC-CSSSSTT
T ss_pred             hCCCC--eEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcc-ccccccc
Confidence            99997  999975 8999999999999999999999999999999999999999999999999999999974 6432 24


Q ss_pred             cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+++|+||||||||+|.||+.+|+++ ++|||+|++|||+.+.....   .            .+. ...++++++++||
T Consensus       170 ~~~~l~gktvGIIGlG~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---~------------~g~-~~~~l~ell~~aD  232 (365)
T 4hy3_A          170 SARLIAGSEIGIVGFGDLGKALRRVL-SGFRARIRVFDPWLPRSMLE---E------------NGV-EPASLEDVLTKSD  232 (365)
T ss_dssp             SCCCSSSSEEEEECCSHHHHHHHHHH-TTSCCEEEEECSSSCHHHHH---H------------TTC-EECCHHHHHHSCS
T ss_pred             cccccCCCEEEEecCCcccHHHHHhh-hhCCCEEEEECCCCCHHHHh---h------------cCe-eeCCHHHHHhcCC
Confidence            57899999999999999999999997 89999999999986432110   0            011 2368999999999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEE
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIV  317 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~  317 (342)
                      +|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|++||++||++|+|+ ||||||++||++ ++|||++|||++
T Consensus       233 vV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvil  311 (365)
T 4hy3_A          233 FIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIR  311 (365)
T ss_dssp             EEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEE
T ss_pred             EEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEE
Confidence            999999999999999999999999999999999999999999999999999998 999999999976 579999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          318 VPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      |||+||+|.+++++|...+++||.
T Consensus       312 TPHia~~t~e~~~~~~~~~~~ni~  335 (365)
T 4hy3_A          312 SAHRAGALDSAFKKMGDMVLEDMD  335 (365)
T ss_dssp             CCSCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCccccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999984

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.3e-64  Score=480.39  Aligned_cols=304  Identities=29%  Similarity=0.497  Sum_probs=265.9

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhc-cCCceEEEc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSR-AGGKAFSNM   93 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-l~~k~i~~~   93 (342)
                      |+||+++.++++. ..+.|++ .+++++... ....+++++.+.+. ++|+++++..+++++++++++|+ |  |+|++.
T Consensus         1 m~~vl~~~~~~~~-~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~L--k~I~~~   74 (320)
T 1gdh_A            1 KKKILITWPLPEA-AMARARE-SYDVIAHGD-DPKITIDEMIETAK-SVDALLITLNEKCRKEVIDRIPENI--KCISTY   74 (320)
T ss_dssp             CCEEEESSCCCHH-HHHHHHT-TSEEEECCS-TTCCCHHHHHHHHT-TCSEEEEETTSCBCHHHHHHSCTTC--CEEEEE
T ss_pred             CcEEEEcCCCCHH-HHHHHHh-cCCEEEecC-CCCCCHHHHHHHhc-CCEEEEECCCCCCCHHHHHhCCccc--eEEEEC
Confidence            3578888887653 4567765 356654322 22357889988887 59999988767899999999998 7  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~  173 (342)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.+....+.++.|+||||||+
T Consensus        75 ~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~  154 (320)
T 1gdh_A           75 SIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGF  154 (320)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECC
T ss_pred             CcccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECc
Confidence            99999999999999999999999999999999999999999999999999999999976654344578999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcC-ChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328          174 GRIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       174 G~IG~~vA~~l~~a~g~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~  252 (342)
                      |.||+.+|+++ ++|||+|++||| ++.+...   ...            +.....++++++++||+|++|+|++++|++
T Consensus       155 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~---~~~------------g~~~~~~l~ell~~aDvVil~~p~~~~t~~  218 (320)
T 1gdh_A          155 GSIGQALAKRA-QGFDMDIDYFDTHRASSSDE---ASY------------QATFHDSLDSLLSVSQFFSLNAPSTPETRY  218 (320)
T ss_dssp             SHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH---HHH------------TCEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCcChhhh---hhc------------CcEEcCCHHHHHhhCCEEEEeccCchHHHh
Confidence            99999999997 799999999999 7654211   111            112234899999999999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHH
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  332 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~  332 (342)
                      +++++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||++||+.++|||++|||++|||++++|.++++++
T Consensus       219 ~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~  298 (320)
T 1gdh_A          219 FFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM  298 (320)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHH
T ss_pred             hcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999966689999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 019328          333 ATLAALNVL  341 (342)
Q Consensus       333 ~~~~~~ni~  341 (342)
                      ...+ +|+.
T Consensus       299 ~~~~-~nl~  306 (320)
T 1gdh_A          299 AHQA-NDLI  306 (320)
T ss_dssp             HHHH-HHHH
T ss_pred             HHHH-HHHH
Confidence            9999 9984

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-64  Score=480.10  Aligned_cols=297  Identities=39%  Similarity=0.599  Sum_probs=265.4

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~   95 (342)
                      +||+++.++++. ..+.|++.++++++....  ..+.+++.+.+. ++|+++++..+++++++++++|+|  |+|++.|+
T Consensus         1 ~~vl~~~~~~~~-~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~i~~~~~   74 (311)
T 2cuk_A            1 MRVLVTRTLPGK-ALDRLRERGLEVEVHRGL--FLPKAELLKRVE-GAVGLIPTVEDRIDAEVMDRAKGL--KVIACYSV   74 (311)
T ss_dssp             CEEEESSCCSSS-TTHHHHHTTCEEEECCSS--CCCHHHHHHHHT-TCSEEECCTTSCBCHHHHHHSTTC--CEEECSSS
T ss_pred             CEEEEeCCCCHH-HHHHHHhcCCeEEEecCC--CCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--eEEEECCc
Confidence            478888877764 356777776777654322  357788888887 599999887678999999999987  99999999


Q ss_pred             ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh
Q 019328           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~  175 (342)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.+....++++.|+||||||+|.
T Consensus        75 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           75 GVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             CCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             CccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999999999999999999999999999999999999997665433457899999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019328          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (342)
Q Consensus       176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~  255 (342)
                      ||+.+|+++ ++|||+|++|||+..+.               .      ....++++++++||+|++|+|++++|+++++
T Consensus       155 IG~~~A~~l-~~~G~~V~~~d~~~~~~---------------~------~~~~~l~ell~~aDvV~l~~p~~~~t~~li~  212 (311)
T 2cuk_A          155 IGQAVAKRA-LAFGMRVVYHARTPKPL---------------P------YPFLSLEELLKEADVVSLHTPLTPETHRLLN  212 (311)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCSS---------------S------SCBCCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCCccc---------------c------cccCCHHHHHhhCCEEEEeCCCChHHHhhcC
Confidence            999999997 79999999999986531               0      1246899999999999999999999999999


Q ss_pred             HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHHHHH
Q 019328          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMAT  334 (342)
Q Consensus       256 ~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~~~~  334 (342)
                      ++.|+.||+|++|||+|||+++|+++|+++|+ |+|+||+||||++||++ ++|||++|||++|||+|++|.++++++..
T Consensus       213 ~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  291 (311)
T 2cuk_A          213 RERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAE  291 (311)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999 99999999999999964 58999999999999999999999999999


Q ss_pred             HHHhhhc
Q 019328          335 LAALNVL  341 (342)
Q Consensus       335 ~~~~ni~  341 (342)
                      .+++|+.
T Consensus       292 ~~~~nl~  298 (311)
T 2cuk_A          292 VAVENLL  298 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999984

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.1e-64  Score=479.95  Aligned_cols=300  Identities=33%  Similarity=0.535  Sum_probs=263.4

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      ++|||+++.++++ ...+.|++.++++..  .  ...+.+++.+.+. ++|+++++...++++++++++|+|  |+|++.
T Consensus         2 ~~~~il~~~~~~~-~~~~~l~~~~~~~~~--~--~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~   73 (307)
T 1wwk_A            2 KRMKVLVAAPLHE-KAIQVLKDAGLEVIY--E--EYPDEDRLVELVK-DVEAIIVRSKPKVTRRVIESAPKL--KVIARA   73 (307)
T ss_dssp             --CEEEECSCCCH-HHHHHHHHTTCEEEE--C--SSCCHHHHHHHST-TCSEEEESSCSCBCHHHHTTCTTC--CEEEES
T ss_pred             CceEEEEeCCCCH-HHHHHHHhCCeEEEe--C--CCCCHHHHHHHhc-CCEEEEEcCCCCCCHHHHhhCCCC--eEEEEC
Confidence            4578999888765 346777776766542  1  1346788888776 599999887667999999999987  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~  173 (342)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..   ....++++.|+||||||+
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIiG~  150 (307)
T 1wwk_A           74 GVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK---KEAMGIELEGKTIGIIGF  150 (307)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCT---TTCCBCCCTTCEEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc---cCcCCcccCCceEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999998853   123468999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019328          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~l  253 (342)
                      |.||+.+|+++ ++|||+|++|||++.+...   ...            +.. ..++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~~~------------g~~-~~~l~ell~~aDvV~l~~p~~~~t~~l  213 (307)
T 1wwk_A          151 GRIGYQVAKIA-NALGMNILLYDPYPNEERA---KEV------------NGK-FVDLETLLKESDVVTIHVPLVESTYHL  213 (307)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHT------------TCE-ECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCChhhH---hhc------------Ccc-ccCHHHHHhhCCEEEEecCCChHHhhh
Confidence            99999999997 7999999999998764211   111            111 248999999999999999999999999


Q ss_pred             cCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHHH
Q 019328          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGM  332 (342)
Q Consensus       254 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~~  332 (342)
                      |+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++ ++|||++|||++|||+|++|.++++++
T Consensus       214 i~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~  293 (307)
T 1wwk_A          214 INEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERA  293 (307)
T ss_dssp             BCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHH
T ss_pred             cCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999984 589999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 019328          333 ATLAALNVL  341 (342)
Q Consensus       333 ~~~~~~ni~  341 (342)
                      ...+++|+.
T Consensus       294 ~~~~~~nl~  302 (307)
T 1wwk_A          294 GVEVAEKVV  302 (307)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999984

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=7.8e-65  Score=486.16  Aligned_cols=300  Identities=29%  Similarity=0.426  Sum_probs=256.2

Q ss_pred             eEEEEeCCCCc-hHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328           16 YRVVSTKPMPG-TRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        16 ~kvl~~~~~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~   92 (342)
                      |||++....+. ..+.+.+++.  ++++......    ..+++.+.+. ++|+++++..+++++++++++|+.++|+|++
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LTPETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSL   76 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CCTTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----CcHHHHHHhc-CCcEEEEcCCCCCCHHHHHhccccCCeEEEE
Confidence            57877643322 3456666643  4566543221    1235555665 5999998866789999999999834499999


Q ss_pred             cccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 019328           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG  172 (342)
                      .|+|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+++|.|. |..  ..+++++|+||||||
T Consensus        77 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~--~~~~~l~g~~vgIiG  153 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVG  153 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEEC
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc-cCC--cccccCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999995 643  357899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~  252 (342)
                      +|.||+.+|+++ ++|||+|++|||+..+....            .     .....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvV~l~~p~~~~t~~  215 (333)
T 1j4a_A          154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK------------K-----GYYVDSLDDLYKQADVISLHVPDVPANVH  215 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH------------T-----TCBCSCHHHHHHHCSEEEECSCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhHHh------------h-----CeecCCHHHHHhhCCEEEEcCCCcHHHHH
Confidence            999999999997 79999999999987653110            0     11224899999999999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CC--------C----CccCCCceEEc
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEMKNAIVV  318 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~--------~----~L~~~~nvi~T  318 (342)
                      +|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||+  +.        +    |||++|||++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993  21        2    59999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhhc
Q 019328          319 PHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       319 PHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      ||+|++|.++++++...+++|+.
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~  318 (333)
T 1j4a_A          296 PKTAFYTTHAVRNMVVKAFDNNL  318 (333)
T ss_dssp             SSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             CccccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.9e-65  Score=488.98  Aligned_cols=299  Identities=26%  Similarity=0.403  Sum_probs=254.9

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        16 ~kvl~~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~   92 (342)
                      |||++..  +.. ..+.+.+.+ .++++......    ..+++.+.+. ++|+++++..+++++++++++|+.++|+|++
T Consensus         1 Mkil~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   74 (333)
T 1dxy_A            1 MKIIAYGARVDE-IQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTI   74 (333)
T ss_dssp             CEEEECSCCTTT-HHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeccccC-HHHHHHHHHhCCeEEEEcCCC----ChHHHHHHhc-CCeEEEEcCCCCCCHHHHHhCcccCceEEEE
Confidence            4677753  333 345566643 46666543221    2245555565 5999999877789999999999834499999


Q ss_pred             cccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 019328           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG  172 (342)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|. |.. ...++++.|+||||||
T Consensus        75 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  152 (333)
T 1dxy_A           75 RNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE-KAG-TFIGKELGQQTVGVMG  152 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH-HHT-CCCCCCGGGSEEEEEC
T ss_pred             cCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc-ccc-CCCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999984 511 1356899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019328          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~  252 (342)
                      +|.||+.+|+++ ++|||+|++|||+..+..                ...  ....++++++++||+|++|+|++++|++
T Consensus       153 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~----------------~~~--~~~~~l~ell~~aDvV~~~~P~~~~t~~  213 (333)
T 1dxy_A          153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGD----------------HPD--FDYVSLEDLFKQSDVIDLHVPGIEQNTH  213 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCSSC----------------CTT--CEECCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhh----------------Hhc--cccCCHHHHHhcCCEEEEcCCCchhHHH
Confidence            999999999997 799999999999865310                001  1235899999999999999999999999


Q ss_pred             ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC-----------CC---CCccCCCceEEc
Q 019328          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-----------MK---PGLSEMKNAIVV  318 (342)
Q Consensus       253 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~-----------~~---~~L~~~~nvi~T  318 (342)
                      +|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||+           ++   +|||++|||++|
T Consensus       214 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~T  293 (333)
T 1dxy_A          214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS  293 (333)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEEC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993           22   379999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhhc
Q 019328          319 PHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       319 PHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      ||+||+|.++++++...+++|+.
T Consensus       294 PHia~~t~e~~~~~~~~~~~nl~  316 (333)
T 1dxy_A          294 PHIAYYTETAVHNMVYFSLQHLV  316 (333)
T ss_dssp             SSCTTCSHHHHHHHHHHHHHHHH
T ss_pred             CccccChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=9.7e-65  Score=485.11  Aligned_cols=301  Identities=21%  Similarity=0.305  Sum_probs=257.5

Q ss_pred             eEEEEeCCCC-chHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           16 YRVVSTKPMP-GTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        16 ~kvl~~~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      |||+++...+ ...+.+.+.+ .++++....   ...+++++.+.+. ++|+++++...++++++++++|+.++|+|++.
T Consensus         1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~   76 (331)
T 1xdw_A            1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVP---DYLNTKETAEMAA-GFDAVILRGNCFANKQNLDIYKKLGVKYILTR   76 (331)
T ss_dssp             CEEEECSCCTTTHHHHHHHGGGTCCEEEECS---CCSCSHHHHHTTT-TCSEEEECTTCCBCHHHHHHHHHHTCCEEEES
T ss_pred             CEEEEEecCccCHHHHHHHHHhcCeEEEECC---CCCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHhhCcccCceEEEEc
Confidence            4787754222 2345666644 455554422   1234567777776 59999998777899999999998445999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~  173 (342)
                      |+|+||||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|. |.. ...|+++.|+||||||+
T Consensus        77 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG~  154 (331)
T 1xdw_A           77 TAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK-VDA-FMFSKEVRNCTVGVVGL  154 (331)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC-CCS-TTCCCCGGGSEEEEECC
T ss_pred             cccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc-ccc-CcCccCCCCCEEEEECc
Confidence            9999999999999999999999999999999999999999999999999999999985 622 23578999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019328          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~l  253 (342)
                      |.||+.+|+++ ++|||+|++|||+..+..                ...  ....++++++++||+|++|+|++++|+++
T Consensus       155 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~----------------~~~--~~~~~l~ell~~aDvV~~~~p~t~~t~~l  215 (331)
T 1xdw_A          155 GRIGRVAAQIF-HGMGATVIGEDVFEIKGI----------------EDY--CTQVSLDEVLEKSDIITIHAPYIKENGAV  215 (331)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCCSC----------------TTT--CEECCHHHHHHHCSEEEECCCCCTTTCCS
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCccHHH----------------Hhc--cccCCHHHHHhhCCEEEEecCCchHHHHH
Confidence            99999999997 799999999999865310                000  12358999999999999999999999999


Q ss_pred             cCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--C--------CC----CccCC-CceEEc
Q 019328          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M--------KP----GLSEM-KNAIVV  318 (342)
Q Consensus       254 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~--------~~----~L~~~-~nvi~T  318 (342)
                      |+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||+  +        ++    |||++ |||++|
T Consensus       216 i~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilT  295 (331)
T 1xdw_A          216 VTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLIT  295 (331)
T ss_dssp             BCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEEC
T ss_pred             hCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEc
Confidence            999999999999999999999999999999999999999999999999994  1        12    79999 999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhhc
Q 019328          319 PHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       319 PHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      ||+||+|.++++++...+++|+.
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~  318 (331)
T 1xdw_A          296 PHLGSYTDEAVKNMVEVSYQNLK  318 (331)
T ss_dssp             CSCTTCSHHHHHHHHHHHHHHHH
T ss_pred             CccccChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=4e-64  Score=477.40  Aligned_cols=297  Identities=27%  Similarity=0.451  Sum_probs=264.3

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      +|||+++.++++ .+.+.|++.++++.. .   ...+.+++.+.+. ++|+++++...++++++++++|+|  |+|++.|
T Consensus         5 ~mkil~~~~~~~-~~~~~l~~~~~~v~~-~---~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   76 (313)
T 2ekl_A            5 TVKALITDPIDE-ILIKTLREKGIQVDY-M---PEISKEELLNIIG-NYDIIVVRSRTKVTKDVIEKGKKL--KIIARAG   76 (313)
T ss_dssp             CCEEEECSCCCH-HHHHHHHHTTCEEEE-C---TTCCHHHHHHHGG-GCSEEEECSSSCBCHHHHHHCTTC--CEEEECS
T ss_pred             ceEEEEECCCCH-HHHHHHHhCCcEEEe-C---CCCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--eEEEEcC
Confidence            468999888765 356778777776642 1   2356788888887 599999876678999999999987  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G  174 (342)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..     ..+.++.|+||||||+|
T Consensus        77 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-----~~~~~l~g~~vgIIG~G  151 (313)
T 2ekl_A           77 IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-----IEGLELAGKTIGIVGFG  151 (313)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC-----CCCCCCTTCEEEEESCS
T ss_pred             CCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC-----CCCCCCCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999998751     34689999999999999


Q ss_pred             hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019328          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       175 ~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li  254 (342)
                      .||+.+|+++ ++|||+|++|||++++...   ...            +.. ..++++++++||+|++|+|++++|++++
T Consensus       152 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~~~------------g~~-~~~l~ell~~aDvVvl~~P~~~~t~~li  214 (313)
T 2ekl_A          152 RIGTKVGIIA-NAMGMKVLAYDILDIREKA---EKI------------NAK-AVSLEELLKNSDVISLHVTVSKDAKPII  214 (313)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHT------------TCE-ECCHHHHHHHCSEEEECCCCCTTSCCSB
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCcchhHH---Hhc------------Cce-ecCHHHHHhhCCEEEEeccCChHHHHhh
Confidence            9999999997 7999999999998765311   111            111 2489999999999999999999999999


Q ss_pred             CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCC---CccCCCceEEcCCCCCCcHHHHHH
Q 019328          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       255 ~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~---~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      +++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||++++   |||++|||++|||+|++|.+++++
T Consensus       215 ~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~  294 (313)
T 2ekl_A          215 DYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR  294 (313)
T ss_dssp             CHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHH
T ss_pred             CHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999998887   999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +...+++|+.
T Consensus       295 ~~~~~~~n~~  304 (313)
T 2ekl_A          295 VAEMTTQNLL  304 (313)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1.3e-64  Score=492.46  Aligned_cols=292  Identities=21%  Similarity=0.212  Sum_probs=252.5

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CcCccHHHHHHhhccCCceEEEcccccCccChhHHH
Q 019328           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~  106 (342)
                      +.+.|++.++++.+....  ..+++++.+.+. ++|++++..  ..++++++++++|+|  |+|++.|+|+||||+++|+
T Consensus        59 ~~~~l~~~g~~v~~~~~~--~~~~~~l~~~l~-~ad~li~~~~~~~~i~~~~l~~~p~L--k~I~~~g~G~d~iD~~aa~  133 (393)
T 2nac_A           59 LRKYLESNGHTLVVTSDK--DGPDSVFERELV-DADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (393)
T ss_dssp             CHHHHHHTTCEEEEESCC--SSTTSHHHHHHT-TCSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHhCCCEEEEecCC--CCCHHHHHHhcc-CCCEEEEcCccCCCCCHHHHhhCCCC--cEEEEcCccccccCHHHHh
Confidence            345777778777653221  224457877787 599998863  357899999999987  9999999999999999999


Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      ++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|... .....+.+|+|+||||||+|.||+.+|+++ +
T Consensus       134 ~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIGlG~IG~~vA~~l-~  211 (393)
T 2nac_A          134 DRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIA-DCVSHAYDLEAMHVGTVAAGRIGLAVLRRL-A  211 (393)
T ss_dssp             HTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHH-HHHTTCCCCTTCEEEEECCSHHHHHHHHHH-G
T ss_pred             cCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCcc-ccccCCccCCCCEEEEEeECHHHHHHHHHH-H
Confidence            99999999999999999999999999999999999999999988421 111236799999999999999999999997 7


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCc
Q 019328          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (342)
Q Consensus       187 a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~ga  266 (342)
                      +|||+|++||++..+....  ...            +.....++++++++||+|++|+|++++|+++|+++.|+.||+|+
T Consensus       212 a~G~~V~~~d~~~~~~~~~--~~~------------G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga  277 (393)
T 2nac_A          212 PFDVHLHYTDRHRLPESVE--KEL------------NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA  277 (393)
T ss_dssp             GGTCEEEEECSSCCCHHHH--HHH------------TCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTE
T ss_pred             hCCCEEEEEcCCccchhhH--hhc------------CceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCC
Confidence            9999999999986432111  011            11223589999999999999999999999999999999999999


Q ss_pred             EEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       267 ilIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      +|||+|||+++|+++|+++|++|+|+||+||||++||++ ++|||++|||++|||+|+.|.++++++...+++||.
T Consensus       278 ilIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~  353 (393)
T 2nac_A          278 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILE  353 (393)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999975 589999999999999999999999999999999984

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.6e-64  Score=489.07  Aligned_cols=306  Identities=22%  Similarity=0.231  Sum_probs=260.4

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CcCccHHHHHHhhccCCceEE
Q 019328           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~~~~~~~~~~~~~~l~~k~i~   91 (342)
                      ++++||+.+.... .+.+.|++.++++.+....  ..+.+++.+.+. ++|++++..  ..++++++++++|+|  |+|+
T Consensus        16 ~~~~vl~~d~~~~-~~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~~~l~~~~~L--k~I~   89 (364)
T 2j6i_A           16 DEEKLYGCTENKL-GIANWLKDQGHELITTSDK--EGGNSVLDQHIP-DADIIITTPFHPAYITKERIDKAKKL--KLVV   89 (364)
T ss_dssp             HCTTCTTBTTTGG-GCHHHHHHTTCEEEEESCC--SSTTSHHHHHGG-GCSEEEECTTSCCCBCHHHHHHCTTC--CEEE
T ss_pred             cCceEEEecCccH-HHHHHHHhCCCEEEEcCCC--CCCHHHHHHHhh-CCeEEEecCcCCCCCCHHHHhhCCCC--eEEE
Confidence            3566666665443 3456777778887654322  224567887777 599998754  246899999999987  9999


Q ss_pred             EcccccCccChhHHHhC--CceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 019328           92 NMAVGYNNVDVNAANKY--GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (342)
Q Consensus        92 ~~g~G~d~id~~~a~~~--gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvG  169 (342)
                      +.|+|+||||+++|+++  ||.|+|+||+++.+||||++++||++.|++..+++.+++|.|. +......+++|+|+|||
T Consensus        90 ~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~-~~~~~~~~~~l~g~tvg  168 (364)
T 2j6i_A           90 VAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWE-VAAIAKDAYDIEGKTIA  168 (364)
T ss_dssp             ESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHTTCCCSTTCEEE
T ss_pred             ECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCC-cCcccCCcccCCCCEEE
Confidence            99999999999999999  9999999999999999999999999999999999999999885 21111246799999999


Q ss_pred             EEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCc
Q 019328          170 VIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (342)
Q Consensus       170 IiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~  248 (342)
                      |||+|+||+.+|+++ ++|||+ |++||++..+....  ..            .+.....++++++++||+|++|+|+++
T Consensus       169 IIG~G~IG~~vA~~l-~~~G~~~V~~~d~~~~~~~~~--~~------------~g~~~~~~l~ell~~aDvV~l~~P~t~  233 (364)
T 2j6i_A          169 TIGAGRIGYRVLERL-VPFNPKELLYYDYQALPKDAE--EK------------VGARRVENIEELVAQADIVTVNAPLHA  233 (364)
T ss_dssp             EECCSHHHHHHHHHH-GGGCCSEEEEECSSCCCHHHH--HH------------TTEEECSSHHHHHHTCSEEEECCCCST
T ss_pred             EECcCHHHHHHHHHH-HhCCCcEEEEECCCccchhHH--Hh------------cCcEecCCHHHHHhcCCEEEECCCCCh
Confidence            999999999999997 799997 99999886432111  11            112233589999999999999999999


Q ss_pred             ccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCC--C---ceEEcCCCC
Q 019328          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM--K---NAIVVPHIA  322 (342)
Q Consensus       249 ~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~--~---nvi~TPHia  322 (342)
                      +|+++|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||++ ++|||.+  |   ||++|||+|
T Consensus       234 ~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia  313 (364)
T 2j6i_A          234 GTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYS  313 (364)
T ss_dssp             TTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCG
T ss_pred             HHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccC
Confidence            999999999999999999999999999999999999999999999999999999976 4799999  9   999999999


Q ss_pred             CCcHHHHHHHHHHHHhhhc
Q 019328          323 SASKWTREGMATLAALNVL  341 (342)
Q Consensus       323 ~~t~~~~~~~~~~~~~ni~  341 (342)
                      ++|.++++++...+++|+.
T Consensus       314 ~~t~e~~~~~~~~~~~nl~  332 (364)
T 2j6i_A          314 GTTLDAQTRYAQGTVNILE  332 (364)
T ss_dssp             GGSHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999984

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=1.7e-63  Score=472.77  Aligned_cols=288  Identities=19%  Similarity=0.220  Sum_probs=243.8

Q ss_pred             CCeEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328           14 GKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        14 ~~~kvl~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~   92 (342)
                      +.|||++..+.+ ...|.+.+++..+++++....+     ++    .. ++|+++++.   .+++++++ |+|  |+|++
T Consensus         2 ~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~ad~~i~~~---~~~~~l~~-~~L--k~I~~   65 (315)
T 3pp8_A            2 NAMEIIFYHPTFNAAWWVNALEKALPHARVREWKV-----GD----NN-PADYALVWQ---PPVEMLAG-RRL--KAVFV   65 (315)
T ss_dssp             CCEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT-----TC----CS-CCSEEEESS---CCHHHHTT-CCC--SEEEE
T ss_pred             CceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC-----CC----cc-CcEEEEECC---CCHHHhCC-CCc--eEEEE
Confidence            458898877654 3467888877655555432221     11    22 599999874   46899998 887  99999


Q ss_pred             cccccCcc-C-hhH---HHhCCceEEcCCCCC-chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCC
Q 019328           93 MAVGYNNV-D-VNA---ANKYGIAVGNTPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (342)
Q Consensus        93 ~g~G~d~i-d-~~~---a~~~gI~v~n~p~~~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gk  166 (342)
                      .|+|+|+| | +++   +.++||+|+|+|+++ +.+||||++++||++.|++..+++.+++|.|..+     .+++++||
T Consensus        66 ~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~  140 (315)
T 3pp8_A           66 LGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PEYTREEF  140 (315)
T ss_dssp             SSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTC
T ss_pred             CCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CCCCcCCC
Confidence            99999999 7 887   788999999999874 7999999999999999999999999999988643     35799999


Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      ||||||+|.||+.+|+++ ++|||+|++|||+++...              ..  .......++++++++||+|++|+|+
T Consensus       141 tvGIiG~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~~--~~~~~~~~l~ell~~aDiV~l~~Pl  203 (315)
T 3pp8_A          141 SVGIMGAGVLGAKVAESL-QAWGFPLRCWSRSRKSWP--------------GV--ESYVGREELRAFLNQTRVLINLLPN  203 (315)
T ss_dssp             CEEEECCSHHHHHHHHHH-HTTTCCEEEEESSCCCCT--------------TC--EEEESHHHHHHHHHTCSEEEECCCC
T ss_pred             EEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCchhhh--------------hh--hhhcccCCHHHHHhhCCEEEEecCC
Confidence            999999999999999997 799999999999865310              00  0011125899999999999999999


Q ss_pred             CcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCCCCc
Q 019328          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASAS  325 (342)
Q Consensus       247 t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia~~t  325 (342)
                      |++|+++|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||++. +|||++|||++|||+||+|
T Consensus       204 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t  283 (315)
T 3pp8_A          204 TAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVT  283 (315)
T ss_dssp             CGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCC
T ss_pred             chhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999864 7999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 019328          326 KWTREGMATLAALNVL  341 (342)
Q Consensus       326 ~~~~~~~~~~~~~ni~  341 (342)
                      .+  +++...+++||.
T Consensus       284 ~~--~~~~~~~~~ni~  297 (315)
T 3pp8_A          284 RP--AEAIDYISRTIT  297 (315)
T ss_dssp             CH--HHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHH
Confidence            86  479999999974

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.6e-62  Score=469.64  Aligned_cols=299  Identities=29%  Similarity=0.435  Sum_probs=260.9

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHH-HHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEE
Q 019328           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        13 ~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~   91 (342)
                      |++++|+++.++++ .+.+.|++. +++.....   ..+.++ +.+.+. ++|+++++..+++++++++++|+|  |+|+
T Consensus        21 m~~~~vl~~~~~~~-~~~~~l~~~-~~~~~~~~---~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~   92 (333)
T 3ba1_A           21 MEAIGVLMMCPMST-YLEQELDKR-FKLFRYWT---QPAQRDFLALQAE-SIRAVVGNSNAGADAELIDALPKL--EIVS   92 (333)
T ss_dssp             -CCCEEEECSCCCH-HHHHHHHHH-SEEEEGGG---CSSHHHHHHHHTT-TEEEEEECSSSCBCHHHHHHCTTC--CEEE
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHhc-CCEEEecC---CCChHHHHHHHhC-CCEEEEEcCCCCCCHHHHhhCCCC--cEEE
Confidence            34578999988775 356667653 45543221   123455 555555 599999877778999999999997  9999


Q ss_pred             EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 019328           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIi  171 (342)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|. +. ....|++++|+|||||
T Consensus        93 ~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~-~~~~~~~l~g~~vgII  170 (333)
T 3ba1_A           93 SFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FG-DFKLTTKFSGKRVGII  170 (333)
T ss_dssp             ESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGG-GC-CCCCCCCCTTCCEEEE
T ss_pred             EcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC-cc-ccccccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999985 22 1234789999999999


Q ss_pred             ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019328          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~  251 (342)
                      |+|.||+.+|+++ ++|||+|++|||++...                 .  +.....++++++++||+|++|+|++++|+
T Consensus       171 G~G~iG~~vA~~l-~~~G~~V~~~dr~~~~~-----------------~--g~~~~~~l~ell~~aDvVil~vP~~~~t~  230 (333)
T 3ba1_A          171 GLGRIGLAVAERA-EAFDCPISYFSRSKKPN-----------------T--NYTYYGSVVELASNSDILVVACPLTPETT  230 (333)
T ss_dssp             CCSHHHHHHHHHH-HTTTCCEEEECSSCCTT-----------------C--CSEEESCHHHHHHTCSEEEECSCCCGGGT
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEECCCchhc-----------------c--CceecCCHHHHHhcCCEEEEecCCChHHH
Confidence            9999999999997 79999999999986531                 0  11234689999999999999999999999


Q ss_pred             cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      ++++++.++.||+|++|||+|||.++|+++|+++|++|+++||+||||++||.+.+|||++|||++|||+|+.|.+++++
T Consensus       231 ~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~  310 (333)
T 3ba1_A          231 HIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKV  310 (333)
T ss_dssp             TCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHH
T ss_pred             HHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998778999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +...+++|+.
T Consensus       311 ~~~~~~~nl~  320 (333)
T 3ba1_A          311 MADLVVGNLE  320 (333)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=2.3e-61  Score=461.81  Aligned_cols=309  Identities=33%  Similarity=0.471  Sum_probs=268.2

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHh-hccCCce
Q 019328           12 PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKA   89 (342)
Q Consensus        12 ~~~~~kvl~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~l~~k~   89 (342)
                      |++++||+++.++++ .+.+.|++. ++++.... .....+++++.+.+. ++|++++....++++++++++ |+|  |+
T Consensus         5 ~~~~~~il~~~~~~~-~~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~~L--k~   79 (330)
T 2gcg_A            5 PVRLMKVFVTRRIPA-EGRVALARAADCEVEQWD-SDEPIPAKELERGVA-GAHGLLCLLSDHVDKRILDAAGANL--KV   79 (330)
T ss_dssp             --CCEEEEESSCCCH-HHHHHHHHCTTEEEEECC-SSSCCCHHHHHHHHT-TCSEEEECTTSCBCHHHHHHHCTTC--CE
T ss_pred             CCCCCEEEEECCCCH-HHHHHHHhcCCceEEEec-CCCCCCHHHHHHHhc-CCeEEEECCCCCCCHHHHHhcCCCc--eE
Confidence            566789999887765 456777765 35665432 223457889988887 599999876678999999999 887  99


Q ss_pred             EEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 019328           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (342)
Q Consensus        90 i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvG  169 (342)
                      |++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.+....|+++.|+|||
T Consensus        80 I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           80 ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             EEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             EEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999997775444557899999999


Q ss_pred             EEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcc
Q 019328          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (342)
Q Consensus       170 IiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~  249 (342)
                      |||+|.||+.+|+++ +++|++|++||++.......  ..            .+... .++++++++||+|++|+|.+++
T Consensus       160 IIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~--~~------------~g~~~-~~l~e~l~~aDvVi~~vp~~~~  223 (330)
T 2gcg_A          160 IIGLGRIGQAIARRL-KPFGVQRFLYTGRQPRPEEA--AE------------FQAEF-VSTPELAAQSDFIVVACSLTPA  223 (330)
T ss_dssp             EECCSHHHHHHHHHH-GGGTCCEEEEESSSCCHHHH--HT------------TTCEE-CCHHHHHHHCSEEEECCCCCTT
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCcchhHH--Hh------------cCcee-CCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 79999999999876432110  00            11122 3899999999999999999999


Q ss_pred             cccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceEEcCCCCCCcHHH
Q 019328          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWT  328 (342)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi~TPHia~~t~~~  328 (342)
                      |+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++||++ ++|||++|||++|||+|+.|.++
T Consensus       224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~  303 (330)
T 2gcg_A          224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRT  303 (330)
T ss_dssp             TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHH
T ss_pred             HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999965 57999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 019328          329 REGMATLAALNVL  341 (342)
Q Consensus       329 ~~~~~~~~~~ni~  341 (342)
                      ++++...+++|+.
T Consensus       304 ~~~~~~~~~~n~~  316 (330)
T 2gcg_A          304 RNTMSLLAANNLL  316 (330)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999984

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1e-61  Score=466.15  Aligned_cols=305  Identities=28%  Similarity=0.392  Sum_probs=254.5

Q ss_pred             CCCCeEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceE
Q 019328           12 PNGKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (342)
Q Consensus        12 ~~~~~kvl~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i   90 (342)
                      ++.+++|++.+... ..+ .+.++. ..++..+.    ..+.+|+.+.+.+++|++++....++++++++++|+|  |+|
T Consensus        18 ~~~kp~i~~l~~~~~~~~-~~~l~~-~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--k~I   89 (347)
T 1mx3_A           18 GSHMPLVALLDGRDCTVE-MPILKD-VATVAFCD----AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RII   89 (347)
T ss_dssp             ---CCEEEESSCSCCTTT-HHHHTT-TCEEEECC----CSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEE
T ss_pred             CCCCCEEEEEcCCcchhh-HHHhhc-cceEEecC----CCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCC--CEE
Confidence            45688888765422 222 345554 34555432    2345666555422478887776678999999999987  999


Q ss_pred             EEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCc----ccc-cccCC
Q 019328           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL----FVG-NLLKG  165 (342)
Q Consensus        91 ~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~----~~g-~~l~g  165 (342)
                      ++.|+|||+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+++|.|.. ....    ..| .+++|
T Consensus        90 ~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~-~~~~~~~~~~~~~~l~g  168 (347)
T 1mx3_A           90 VRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQ-SVEQIREVASGAARIRG  168 (347)
T ss_dssp             EESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCC-SHHHHHHHTTTCCCCTT
T ss_pred             EEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccc-ccccccccccCccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999842 1100    112 68999


Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      +||||||+|+||+.+|+++ ++|||+|++|||+..+....   .+            +.....++++++++||+|++|+|
T Consensus       169 ~tvGIIG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~~------------g~~~~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRA-KAFGFNVLFYDPYLSDGVER---AL------------GLQRVSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECTTSCTTHHH---HH------------TCEECSSHHHHHHHCSEEEECCC
T ss_pred             CEEEEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhHh---hc------------CCeecCCHHHHHhcCCEEEEcCC
Confidence            9999999999999999997 79999999999986532111   11            11233589999999999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC--CCCccCCCceEEcCCCCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~--~~~L~~~~nvi~TPHia~  323 (342)
                      ++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||++|||+.||++  ++|||.+|||++|||+|+
T Consensus       233 ~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~  312 (347)
T 1mx3_A          233 LNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  312 (347)
T ss_dssp             CCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHH
Confidence            999999999999999999999999999999999999999999999999999999999975  479999999999999999


Q ss_pred             CcHHHHHHHHHHHHhhhc
Q 019328          324 ASKWTREGMATLAALNVL  341 (342)
Q Consensus       324 ~t~~~~~~~~~~~~~ni~  341 (342)
                      +|.+++++|...+++|+.
T Consensus       313 ~t~~~~~~~~~~~~~ni~  330 (347)
T 1mx3_A          313 YSEQASIEMREEAAREIR  330 (347)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999984

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.1e-60  Score=457.82  Aligned_cols=304  Identities=40%  Similarity=0.660  Sum_probs=265.7

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      |+||+++.++++ .+.+.|++. +++++.. .....+++++.+.+. ++|+++++...++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~L--k~I~~~~   75 (334)
T 2dbq_A            2 KPKVFITREIPE-VGIKMLEDE-FEVEVWG-DEKEIPREILLKKVK-EVDALVTMLSERIDKEVFENAPKL--RIVANYA   75 (334)
T ss_dssp             CCEEEESSCCCH-HHHHHHHTT-SEEEECC-CSSCCCHHHHHHHTT-SCSEEEECTTSCBCHHHHHTCTTC--CEEEESS
T ss_pred             CcEEEEecCCCH-HHHHHHHhc-CCEEEec-CCCCCCHHHHHHHhc-CcEEEEEcCCCCCCHHHHhhCCCc--eEEEECC
Confidence            468998887765 456677653 5665432 222357888888887 599999887778999999999987  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC----CCCCCcccccccCCCEEEE
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~----~w~~~~~~g~~l~gktvGI  170 (342)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|.    .|.+....|+++.|+||||
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgI  155 (334)
T 2dbq_A           76 VGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGI  155 (334)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEE
T ss_pred             cccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999996    5654334578999999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      ||+|.||+.+|+++ ++||++|++|||+......   ..+       +     . ...++++++++||+|++|+|++++|
T Consensus       156 IG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~---~~~-------g-----~-~~~~l~~~l~~aDvVil~vp~~~~t  218 (334)
T 2dbq_A          156 IGLGRIGQAIAKRA-KGFNMRILYYSRTRKEEVE---REL-------N-----A-EFKPLEDLLRESDFVVLAVPLTRET  218 (334)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHH-------C-----C-EECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HhCCCEEEEECCCcchhhH---hhc-------C-----c-ccCCHHHHHhhCCEEEECCCCChHH
Confidence            99999999999997 6999999999998764211   111       1     1 1258999999999999999999999


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHH
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE  330 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~  330 (342)
                      +++++++.++.||+|++|||+|||.++|+++|+++|++|+++||++|||++||..++|||++|||++|||+|+.|.++.+
T Consensus       219 ~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~  298 (334)
T 2dbq_A          219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE  298 (334)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHH
T ss_pred             HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999556799999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 019328          331 GMATLAALNVL  341 (342)
Q Consensus       331 ~~~~~~~~ni~  341 (342)
                      ++...+++|+.
T Consensus       299 ~~~~~~~~n~~  309 (334)
T 2dbq_A          299 GMAELVAKNLI  309 (334)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999984

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=8.1e-61  Score=458.33  Aligned_cols=299  Identities=31%  Similarity=0.484  Sum_probs=262.6

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      ++||+++.++++. ..+.|++. +++++..    ..+.+++.+.+. ++|+++++...++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~~-~~~~l~~~-~~~~~~~----~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (333)
T 2d0i_A            2 RPKVGVLLKMKRE-ALEELKKY-ADVEIIL----YPSGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHS   72 (333)
T ss_dssp             CSEEEECSCCCHH-HHHHHHTT-SEEEECC----SCCHHHHHHHGG-GCSEEEECTTSCBCHHHHTTCTTC--CEEEESS
T ss_pred             CcEEEEECCCCHH-HHHHHHhc-CCEEEeC----CCCHHHHHHHhc-CCEEEEECCCCCCCHHHHhhCCCc--eEEEECC
Confidence            4689998887753 46677654 5665432    257888888887 599999877778999999999987  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc----cccCCCEEEE
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQTVGV  170 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g----~~l~gktvGI  170 (342)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|. ....|    ++|.|+||||
T Consensus        73 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~~~~~l~g~~vgI  151 (333)
T 2d0i_A           73 AGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA-KIWTGFKRIESLYGKKVGI  151 (333)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHH-HHHTTSCCCCCSTTCEEEE
T ss_pred             cccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCc-ccccCCcccCCCCcCEEEE
Confidence            999999999999999999999999999999999999999999999999999999986442 11245    7999999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      ||+|.||+.+|+++ ++||++|++||++......   ..+            +.. ..++++++++||+|++|+|++++|
T Consensus       152 IG~G~iG~~vA~~l-~~~G~~V~~~d~~~~~~~~---~~~------------g~~-~~~l~e~l~~aDiVil~vp~~~~t  214 (333)
T 2d0i_A          152 LGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVE---KEL------------KAR-YMDIDELLEKSDIVILALPLTRDT  214 (333)
T ss_dssp             ECCSHHHHHHHHHH-GGGTCEEEEECSSCCHHHH---HHH------------TEE-ECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HHCCCEEEEECCCcchhhh---hhc------------Cce-ecCHHHHHhhCCEEEEcCCCChHH
Confidence            99999999999997 7999999999998764211   111            111 248999999999999999999999


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC-ceEEcCCCCCCcHHHH
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWTR  329 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~-nvi~TPHia~~t~~~~  329 (342)
                      +++++++.++.||+| +|||+|||.++|+++|+++|++|+++||++|||++||++++|||++| ||++|||+|+.|.++.
T Consensus       215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~  293 (333)
T 2d0i_A          215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ  293 (333)
T ss_dssp             TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHH
T ss_pred             HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHH
Confidence            999999999999999 99999999999999999999999999999999999997788999999 9999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 019328          330 EGMATLAALNVL  341 (342)
Q Consensus       330 ~~~~~~~~~ni~  341 (342)
                      +++...+++|+.
T Consensus       294 ~~~~~~~~~n~~  305 (333)
T 2d0i_A          294 EDVGFRAVENLL  305 (333)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999984

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=2.5e-61  Score=466.09  Aligned_cols=273  Identities=27%  Similarity=0.375  Sum_probs=237.7

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      +||||+++..++.  ..+.+++.+ ++++...  ...+.++    +. ++|+++++..+++++++++ .++|  |+|++.
T Consensus         2 ~mmkIl~~~~~p~--~~~~~~~~~-~v~~~~~--~~~~~~~----l~-~ad~li~~~~~~v~~~ll~-~~~L--k~I~~~   68 (381)
T 3oet_A            2 NAMKILVDENMPY--ARELFSRLG-EVKAVPG--RPIPVEE----LN-HADALMVRSVTKVNESLLS-GTPI--NFVGTA   68 (381)
T ss_dssp             CCCEEEEETTSTT--HHHHHTTSS-EEEEECC-----CHHH----HT-TCSEEEECTTSCBSHHHHT-TSCC--CEEEES
T ss_pred             CceEEEECCCCcH--HHHHHhhCC-cEEEeCC--CCCCHHH----HC-CCEEEEECCCCCCCHHHHc-CCCC--EEEEEc
Confidence            4689999988875  345666655 6665432  2344444    34 5999999887889999998 4555  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~  173 (342)
                      |+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+.                     |.+++||||||||+
T Consensus        69 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------------------g~~l~gktvGIIGl  127 (381)
T 3oet_A           69 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------------------GFSLRDRTIGIVGV  127 (381)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------------------TCCGGGCEEEEECC
T ss_pred             cccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------------------CCccCCCEEEEEeE
Confidence            999999999999999999999999999999999999999999863                     35899999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcc----
Q 019328          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----  249 (342)
Q Consensus       174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~----  249 (342)
                      |+||+.+|+++ ++|||+|++|||+....               .    ......++++++++||+|++|+|+|++    
T Consensus       128 G~IG~~vA~~l-~a~G~~V~~~d~~~~~~---------------~----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~  187 (381)
T 3oet_A          128 GNVGSRLQTRL-EALGIRTLLCDPPRAAR---------------G----DEGDFRTLDELVQEADVLTFHTPLYKDGPYK  187 (381)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECHHHHHT---------------T----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCChHHh---------------c----cCcccCCHHHHHhhCCEEEEcCcCCcccccc
Confidence            99999999997 79999999999854321               0    012346999999999999999999999    


Q ss_pred             cccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHH
Q 019328          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR  329 (342)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~  329 (342)
                      |+++|+++.|+.||+|++|||+|||+++|++||++||++|+++||+||||++||+++++||.++ +++|||+||+|.|++
T Consensus       188 T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~  266 (381)
T 3oet_A          188 TLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGK  266 (381)
T ss_dssp             CTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHH
T ss_pred             chhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888899875 899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 019328          330 EGMATLAALNVL  341 (342)
Q Consensus       330 ~~~~~~~~~ni~  341 (342)
                      .++..++++|+.
T Consensus       267 ~~~~~~~~~~l~  278 (381)
T 3oet_A          267 ARGTTQVFEAYS  278 (381)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999984

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=4.7e-61  Score=462.58  Aligned_cols=306  Identities=26%  Similarity=0.363  Sum_probs=258.2

Q ss_pred             CCeEEEEeCC-CCc-hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc----CCccEEEec------CCcCccHHHHHH
Q 019328           14 GKYRVVSTKP-MPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIG----DKCDGVIGQ------LTEDWGETLFAA   81 (342)
Q Consensus        14 ~~~kvl~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~i~~------~~~~~~~~~~~~   81 (342)
                      +++|||++.+ ++. ....+.|++. +++....    ..+++++.+.+.    +++|+++..      ...+++++++++
T Consensus         2 ~~~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~   76 (348)
T 2w2k_A            2 PRPRVLLLGDPARHLDDLWSDFQQK-FEVIPAN----LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISH   76 (348)
T ss_dssp             CCCEEEECSSCCSSCHHHHHHHHHH-SEEEECC----CCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTT
T ss_pred             CCcEEEEECCccccChHHHHHHHhc-ceEEecC----CCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHh
Confidence            4578998887 532 2334566543 5665422    246889988876    148888864      245899999999


Q ss_pred             hh-ccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCC---CCCCC-CC
Q 019328           82 LS-RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL---YDGWL-PN  156 (342)
Q Consensus        82 ~~-~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~---w~~w~-~~  156 (342)
                      +| +|  |+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.   |..+. ..
T Consensus        77 ~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~  154 (348)
T 2w2k_A           77 LPSSL--KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEI  154 (348)
T ss_dssp             SCTTC--CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             cccCc--eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccc
Confidence            98 46  99999999999999999999999999999999999999999999999999999999999998   73110 01


Q ss_pred             cccccccCCCEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh
Q 019328          157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       157 ~~~g~~l~gktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (342)
                      ...|.+++|+||||||+|.||+.+|+++ + +|||+|++||++.......  ...            +.....+++++++
T Consensus       155 ~~~~~~l~g~~vgIIG~G~IG~~vA~~l-~~~~G~~V~~~d~~~~~~~~~--~~~------------g~~~~~~l~ell~  219 (348)
T 2w2k_A          155 GKSAHNPRGHVLGAVGLGAIQKEIARKA-VHGLGMKLVYYDVAPADAETE--KAL------------GAERVDSLEELAR  219 (348)
T ss_dssp             HTTCCCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHH--HHH------------TCEECSSHHHHHH
T ss_pred             cccCcCCCCCEEEEEEECHHHHHHHHHH-HHhcCCEEEEECCCCcchhhH--hhc------------CcEEeCCHHHHhc
Confidence            1246799999999999999999999997 8 9999999999986532111  000            1122348999999


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv  315 (342)
                      +||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||++|||++||..++|||++|||
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nv  299 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHV  299 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSE
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999656789999999


Q ss_pred             EEcCCCCCCcHHHHHHHHHHHHhhhc
Q 019328          316 IVVPHIASASKWTREGMATLAALNVL  341 (342)
Q Consensus       316 i~TPHia~~t~~~~~~~~~~~~~ni~  341 (342)
                      ++|||+|+.|.++++++...+++||.
T Consensus       300 iltPH~~~~t~e~~~~~~~~~~~ni~  325 (348)
T 2w2k_A          300 TLTTHIGGVAIETFHEFERLTMTNID  325 (348)
T ss_dssp             EECCSCTTCSHHHHHHHHHHHHHHHH
T ss_pred             EEcCcCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999984

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.4e-60  Score=450.87  Aligned_cols=279  Identities=23%  Similarity=0.338  Sum_probs=243.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~   95 (342)
                      |||+++.++++ .+.+.|++.++++.   .           +.+. ++|+++++.   .+.++++++|+|  |+|++.|+
T Consensus         1 m~il~~~~~~~-~~~~~l~~~~~~v~---~-----------~~~~-~~d~~i~~~---~~~~~l~~~~~L--k~I~~~~~   59 (303)
T 1qp8_A            1 MELYVNFELPP-EAEEELRKYFKIVR---G-----------GDLG-NVEAALVSR---ITAEELAKMPRL--KFIQVVTA   59 (303)
T ss_dssp             CEEECCSCCCH-HHHHHHHTTCEEEC---S-----------SCCT-TBCCCCBSC---CCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEccCCCH-HHHHHHHhcCCccc---h-----------hhhC-CCEEEEECC---CCHHHHhhCCCC--cEEEECCc
Confidence            47888888765 45677776554431   1           1233 589888764   346899999987  99999999


Q ss_pred             ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh
Q 019328           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~  175 (342)
                      |+|+||++++ ++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+.    .++++.|+||||||+|.
T Consensus        60 G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~~l~g~~vgIIG~G~  134 (303)
T 1qp8_A           60 GLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGE  134 (303)
T ss_dssp             CCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCST
T ss_pred             CcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCCCCCCEEEEEccCH
Confidence            9999999985 799999999999999999999999999999999999999999985321    23589999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019328          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (342)
Q Consensus       176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~  255 (342)
                      ||+.+|+++ ++|||+|++|||++..                .    +.....++++++++||+|++|+|++++|+++|+
T Consensus       135 IG~~~A~~l-~~~G~~V~~~dr~~~~----------------~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~  193 (303)
T 1qp8_A          135 IGTRVGKIL-AALGAQVRGFSRTPKE----------------G----PWRFTNSLEEALREARAAVCALPLNKHTRGLVK  193 (303)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCC----------------S----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCccc----------------c----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC
Confidence            999999997 7999999999997641                0    112246899999999999999999999999999


Q ss_pred             HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecC-CCCCCC-CCCccCCCceEEcCCCCCC--cHHHHHH
Q 019328          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF-EDEPYM-KPGLSEMKNAIVVPHIASA--SKWTREG  331 (342)
Q Consensus       256 ~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~-~~EP~~-~~~L~~~~nvi~TPHia~~--t~~~~~~  331 (342)
                      ++.|+.||+|++|||+|||+++|+++|+++|++|+|+||++||| ++||++ ++|||++|||++|||+||.  |.+++++
T Consensus       194 ~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~  273 (303)
T 1qp8_A          194 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQ  273 (303)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHH
T ss_pred             HHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999 889986 5799999999999999998  9999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      |...+++|+.
T Consensus       274 ~~~~~~~nl~  283 (303)
T 1qp8_A          274 MVMEAVRNLI  283 (303)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.3e-58  Score=468.09  Aligned_cols=299  Identities=30%  Similarity=0.413  Sum_probs=264.1

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      ++|||++++++++. ..+.|++. +++++..    ..+++++.+.+. ++|++++++.+++++++++++|+|  |+|++.
T Consensus         3 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~i~~~   73 (529)
T 1ygy_A            3 SLPVVLIADKLAPS-TVAALGDQ-VEVRWVD----GPDRDKLLAAVP-EADALLVRSATTVDAEVLAAAPKL--KIVARA   73 (529)
T ss_dssp             CCCEEEECSSCCGG-GGTTSCSS-SEEEECC----TTSHHHHHHHGG-GCSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCcEEEEeCCCCHH-HHHHHhcC-ceEEEcC----CCCHHHHHHHhc-CCEEEEEcCCCCCCHHHHhhCCCC--cEEEEC
Confidence            46789999887753 34556554 6666432    246889988887 599999987788999999999987  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~  173 (342)
                      |+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|..   ..+.|.+|+|+||||||+
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIIG~  150 (529)
T 1ygy_A           74 GVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVGL  150 (529)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEECC
T ss_pred             CcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcc---cCcCccccCCCEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999998852   234578999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019328          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~l  253 (342)
                      |+||+++|+++ ++|||+|++|||+......   ...            +... .++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~a---~~~------------g~~~-~~l~e~~~~aDvV~l~~P~~~~t~~~  213 (529)
T 1ygy_A          151 GRIGQLVAQRI-AAFGAYVVAYDPYVSPARA---AQL------------GIEL-LSLDDLLARADFISVHLPKTPETAGL  213 (529)
T ss_dssp             SHHHHHHHHHH-HTTTCEEEEECTTSCHHHH---HHH------------TCEE-CCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HhCCCEEEEECCCCChhHH---Hhc------------CcEE-cCHHHHHhcCCEEEECCCCchHHHHH
Confidence            99999999997 7999999999998743211   111            1122 38999999999999999999999999


Q ss_pred             cCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHHH
Q 019328          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA  333 (342)
Q Consensus       254 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~~  333 (342)
                      ++++.++.||+|+++||+|||+++|+++|+++|++|+++||++|||+.||..++|||++||+++|||+++.|.++++++.
T Consensus       214 i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~  293 (529)
T 1ygy_A          214 IDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAG  293 (529)
T ss_dssp             BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHH
T ss_pred             hCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HHHHhhhc
Q 019328          334 TLAALNVL  341 (342)
Q Consensus       334 ~~~~~ni~  341 (342)
                      ..+++|+.
T Consensus       294 ~~~~~~l~  301 (529)
T 1ygy_A          294 TDVAESVR  301 (529)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=3.8e-59  Score=437.74  Aligned_cols=243  Identities=27%  Similarity=0.365  Sum_probs=219.2

Q ss_pred             CccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHH
Q 019328           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (342)
Q Consensus        62 ~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~  141 (342)
                      ++|++++.. .++      ++|+|  |+|++.|+|+|+||+++|+++||.++| +|.++.+||||++++||++.|++..+
T Consensus        34 ~ad~li~~~-~~~------~~~~L--k~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~  103 (290)
T 3gvx_A           34 DAEAQVIKD-RYV------LGKRT--KMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILEN  103 (290)
T ss_dssp             CCSEEEESS-CCC------CCSSC--CEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhhhhhhhh-hhh------hhhhh--HHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhh
Confidence            589999843 332      67887  999999999999999999987766555 58899999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC
Q 019328          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ++.+++|.|... +    .++|+|+||||||+|.||+++|+++ ++|||+|++|||+..+..              .   
T Consensus       104 ~~~~~~g~w~~~-~----~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~---  160 (290)
T 3gvx_A          104 NELMKAGIFRQS-P----TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVDQN--------------V---  160 (290)
T ss_dssp             HHHHHTTCCCCC-C----CCCCTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSCCCTT--------------C---
T ss_pred             hhHhhhcccccC-C----ceeeecchheeeccCchhHHHHHHH-HhhCcEEEEEeccccccc--------------c---
Confidence            999999998532 1    2689999999999999999999997 799999999999865310              0   


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (342)
Q Consensus       222 ~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~  301 (342)
                        .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++
T Consensus       161 --~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (290)
T 3gvx_A          161 --DVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN  238 (290)
T ss_dssp             --SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             --ccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence              123459999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCceEEcCCCC-CCcHHHHHHHHHHHHhhhc
Q 019328          302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVL  341 (342)
Q Consensus       302 EP~~~~~L~~~~nvi~TPHia-~~t~~~~~~~~~~~~~ni~  341 (342)
                      ||+  +|||++|||++|||+| ++|.++++++.+.+++||.
T Consensus       239 EP~--~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~  277 (290)
T 3gvx_A          239 EPE--ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVR  277 (290)
T ss_dssp             TTS--CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHH
T ss_pred             Ccc--cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHH
Confidence            998  8999999999999999 9999999999999999984

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=9.3e-58  Score=442.07  Aligned_cols=271  Identities=26%  Similarity=0.385  Sum_probs=235.3

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~   95 (342)
                      |||+++..++.  ..+.+++.+ +++.....  ..+.+++    . ++|+++++..+++++++++ +|+|  |+|++.|+
T Consensus         1 mkil~~~~~~~--~~~~~~~~~-~v~~~~~~--~~~~~~l----~-~ad~li~~~~~~~~~~~l~-~~~L--k~I~~~~~   67 (380)
T 2o4c_A            1 MRILADENIPV--VDAFFADQG-SIRRLPGR--AIDRAAL----A-EVDVLLVRSVTEVSRAALA-GSPV--RFVGTCTI   67 (380)
T ss_dssp             CEEEEETTCTT--HHHHHGGGS-EEEEECGG--GCSTTTT----T-TCSEEEECTTSCBCHHHHT-TSCC--CEEEECSS
T ss_pred             CEEEEecCchH--HHHHHHhCC-cEEEecCC--cCChHHH----C-CcEEEEEcCCCCCCHHHhc-CCCc--eEEEEcCc
Confidence            47888887765  245666554 55543321  2233332    3 5999999877789999998 8887  99999999


Q ss_pred             ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh
Q 019328           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~  175 (342)
                      |+||||+++|+++||.|+|+||+|+.+||||++++||++.|++                     |.++.|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------------------~~~l~g~tvGIIGlG~  126 (380)
T 2o4c_A           68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------------------GADLAERTYGVVGAGQ  126 (380)
T ss_dssp             CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------------------TCCGGGCEEEEECCSH
T ss_pred             ccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------------------hcccCCCEEEEEeCCH
Confidence            9999999999999999999999999999999999999999873                     2489999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcc----cc
Q 019328          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (342)
Q Consensus       176 IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~----t~  251 (342)
                      ||+.+|+++ ++|||+|++|||+....  .              .  + ....++++++++||+|++|+|++++    |+
T Consensus       127 IG~~vA~~l-~~~G~~V~~~d~~~~~~--~--------------~--g-~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          127 VGGRLVEVL-RGLGWKVLVCDPPRQAR--E--------------P--D-GEFVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECHHHHHH--S--------------T--T-SCCCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             HHHHHHHHH-HHCCCEEEEEcCChhhh--c--------------c--C-cccCCHHHHHHhCCEEEEeccCccccccchh
Confidence            999999997 79999999999865421  0              0  1 1246899999999999999999999    99


Q ss_pred             cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHH
Q 019328          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~  331 (342)
                      ++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+++++|+. +||++|||+||+|.++..+
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~  265 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLR  265 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988888887 5999999999999999999


Q ss_pred             HHHHHHhhhc
Q 019328          332 MATLAALNVL  341 (342)
Q Consensus       332 ~~~~~~~ni~  341 (342)
                      +..++++|+.
T Consensus       266 ~~~~~~~nl~  275 (380)
T 2o4c_A          266 GTAQIYQAYC  275 (380)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999974

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=1.1e-36  Score=302.75  Aligned_cols=213  Identities=15%  Similarity=0.192  Sum_probs=176.9

Q ss_pred             CceEE-EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCC
Q 019328           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (342)
Q Consensus        87 ~k~i~-~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~g  165 (342)
                      ++.|+ ..++|+|++  ++|+++||.|+|+|++|+ +|||+       ++|++....+.+++| |.   .  ..|.++.|
T Consensus       214 l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~---~--~~g~~L~G  277 (494)
T 3d64_A          214 IKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IK---R--ATDVMIAG  277 (494)
T ss_dssp             CCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HH---H--HHCCCCTT
T ss_pred             cEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hh---h--ccccccCC
Confidence            37887 889999998  789999999999999999 99994       357776666666665 42   1  34678999


Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      |||||||+|.||+.+|+++ ++|||+|++|||++....+...              .+. ...++++++++||+|++|+ 
T Consensus       278 ktVgIIG~G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~~--------------~G~-~~~~l~ell~~aDiVi~~~-  340 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSL-RGLGATVWVTEIDPICALQAAM--------------EGY-RVVTMEYAADKADIFVTAT-  340 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHHT--------------TTC-EECCHHHHTTTCSEEEECS-
T ss_pred             CEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHHH--------------cCC-EeCCHHHHHhcCCEEEECC-
Confidence            9999999999999999997 7999999999999865322110              011 2358999999999999997 


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCC--CceEEcCCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM--KNAIVVPHI  321 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~--~nvi~TPHi  321 (342)
                         +|+++|+++.|++||+|++|||+|||++ ||+++| +||++|+|+ +++||   ||++ ++|||.+  |||++| |+
T Consensus       341 ---~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~  411 (494)
T 3d64_A          341 ---GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GC  411 (494)
T ss_dssp             ---SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HT
T ss_pred             ---CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eC
Confidence               6899999999999999999999999999 699999 999999987 55555   4654 4789998  999999 99


Q ss_pred             C-CCcHH-HHHHHHHHHHhhhc
Q 019328          322 A-SASKW-TREGMATLAALNVL  341 (342)
Q Consensus       322 a-~~t~~-~~~~~~~~~~~ni~  341 (342)
                      | +.|.+ +..+++.++++|+.
T Consensus       412 atg~~~~~~~~~~a~~~~~ni~  433 (494)
T 3d64_A          412 ATGHPSFVMSNSFTNQTLAQIE  433 (494)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Confidence            9 66744 77888999999874

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=2.3e-36  Score=299.31  Aligned_cols=215  Identities=13%  Similarity=0.132  Sum_probs=183.6

Q ss_pred             CceEE-EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCC
Q 019328           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (342)
Q Consensus        87 ~k~i~-~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~g  165 (342)
                      ++.|+ ..++|+|++  ++|+++||.++|+|++|+ +|+|       +++|++..+.+.+++| |.+     ..+.++.|
T Consensus       194 l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-----~~~~~l~G  257 (479)
T 1v8b_A          194 IIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-----ATDFLISG  257 (479)
T ss_dssp             CCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-----HHCCCCTT
T ss_pred             eEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-----ccccccCC
Confidence            48888 889999998  789999999999999999 9999       4578888888888887 632     34678999


Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      |||||||+|.||+.+|+++ ++|||+|++||+++........              .++ ...++++++++||+|++|+ 
T Consensus       258 ktVgIIG~G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a~~--------------~g~-~~~~l~ell~~aDiVi~~~-  320 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVM--------------EGF-NVVTLDEIVDKGDFFITCT-  320 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHT--------------TTC-EECCHHHHTTTCSEEEECC-
T ss_pred             CEEEEEeeCHHHHHHHHHH-HhCcCEEEEEeCChhhHHHHHH--------------cCC-EecCHHHHHhcCCEEEECC-
Confidence            9999999999999999997 7999999999999865322110              111 2358999999999999994 


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHH--HHHcCCccEEEeecCCCCCCCCCCccCC--CceEEcCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE--HLKQNPMFRVGLDVFEDEPYMKPGLSEM--KNAIVVPH  320 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~--aL~~g~i~gaalDV~~~EP~~~~~L~~~--~nvi~TPH  320 (342)
                         +|+++|+++.|+.||+|++|||+|||++ ||+++|.+  ||++|+|+ +++|||+.+  +++|||.+  |||++| |
T Consensus       321 ---~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp--~~~~l~~l~~~nvv~t-H  393 (479)
T 1v8b_A          321 ---GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLP--NGNKIIVLARGRLLNL-G  393 (479)
T ss_dssp             ---SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECT--TSCEEEEEGGGSBHHH-H
T ss_pred             ---ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECC--CCCeeeEecCCCEEEE-e
Confidence               7899999999999999999999999999 99999999  99999998 999999442  25789988  999999 9


Q ss_pred             CC-CCcHH-HHHHHHHHHHhhhc
Q 019328          321 IA-SASKW-TREGMATLAALNVL  341 (342)
Q Consensus       321 ia-~~t~~-~~~~~~~~~~~ni~  341 (342)
                      +| +.+.+ +..+++.++++|+.
T Consensus       394 ~atghp~e~~~~s~a~~~~~ni~  416 (479)
T 1v8b_A          394 CATGHPAFVMSFSFCNQTFAQLD  416 (479)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCchhHHHHHHHHHHHHHH
Confidence            99 66756 67788888888874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.97  E-value=6.1e-30  Score=240.24  Aligned_cols=215  Identities=15%  Similarity=0.086  Sum_probs=166.0

Q ss_pred             CCeEEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCC------CCHHHHHHHhcCCccEEEec----------------C
Q 019328           14 GKYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTI------LSVEDIIALIGDKCDGVIGQ----------------L   70 (342)
Q Consensus        14 ~~~kvl~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~i~~----------------~   70 (342)
                      ..|||++...... ..+.+.|.+.++++.+...++..      ...+++.+.+. ++|+++++                .
T Consensus         4 ~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            4 TGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN-TVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG-GCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             cCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHh-cCCEEEeccccccCCceeecccccC
Confidence            4577877654332 34567888889988765332211      12245555555 58999875                2


Q ss_pred             CcCccHHHHHHhhccCCceEEEcccccCccCh-hHHHhCCceEEcCC------CCCchhHHHHHHHHHHHHHhchHHHHH
Q 019328           71 TEDWGETLFAALSRAGGKAFSNMAVGYNNVDV-NAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEADE  143 (342)
Q Consensus        71 ~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~-~~a~~~gI~v~n~p------~~~~~~vAE~al~l~L~~~R~~~~~~~  143 (342)
                      ..++++++++++|++  |+|+   +|+|++|+ ++|+++||.|+|+|      ++++.+|||++++++|..         
T Consensus        83 ~~~~~~~~l~~~~~l--~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~---------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNH--CVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH---------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             CccchHHHHHhCCCC--CEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh---------
Confidence            346899999999987  9987   79999998 89999999999998      889999999999998852         


Q ss_pred             HHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcc
Q 019328          144 FMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT  223 (342)
Q Consensus       144 ~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (342)
                                     .+.++.|+|+||||+|.||+.+|+++ ++||++|++|||++.+....  ..+       +   ..
T Consensus       149 ---------------~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~dr~~~~~~~~--~~~-------g---~~  200 (293)
T 3d4o_A          149 ---------------TDFTIHGANVAVLGLGRVGMSVARKF-AALGAKVKVGARESDLLARI--AEM-------G---ME  200 (293)
T ss_dssp             ---------------CSSCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHH--HHT-------T---SE
T ss_pred             ---------------cCCCCCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECCHHHHHHH--HHC-------C---Ce
Confidence                           13579999999999999999999997 79999999999987542111  111       1   11


Q ss_pred             ccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       224 ~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      .....++++++++||+|++|+|+     ++++++.|+.||+|+++||++||+.
T Consensus       201 ~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          201 PFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             ecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            11124789999999999999995     7899999999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.94  E-value=8.9e-27  Score=219.32  Aligned_cols=224  Identities=15%  Similarity=0.100  Sum_probs=160.8

Q ss_pred             CCC-CCeEEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCCC------CHHHHHHHhcCCccEEEec---C---------
Q 019328           11 NPN-GKYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTIL------SVEDIIALIGDKCDGVIGQ---L---------   70 (342)
Q Consensus        11 ~~~-~~~kvl~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~d~~i~~---~---------   70 (342)
                      ++| +.|||++...-.. ..+.+.|.+.++++.+...++...      ..+++.+.+. ++|+++..   .         
T Consensus         2 ~~~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~s~   80 (300)
T 2rir_A            2 NAMLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ-QIDSIILPVSATTGEGVVSTV   80 (300)
T ss_dssp             CCCCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG-GCSEEECCSSCEETTTEECBS
T ss_pred             CccccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHh-cCCEEEeccccccCCcccccc
Confidence            453 3568888754322 345677888899887653322211      1223444454 58999871   1         


Q ss_pred             --CcC--ccHHHHHHhhccCCceEEEcccccCccC-hhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHH
Q 019328           71 --TED--WGETLFAALSRAGGKAFSNMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFM  145 (342)
Q Consensus        71 --~~~--~~~~~~~~~~~l~~k~i~~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~  145 (342)
                        ..+  +++++++++|++  |+|+   +|+|++| +++|+++||.|+|+|+++  ++         ++.|++..+    
T Consensus        81 ~a~~~~~~~~~~l~~~~~l--~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~----  140 (300)
T 2rir_A           81 FSNEEVVLKQDHLDRTPAH--CVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV----  140 (300)
T ss_dssp             SCSSCEECCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH----
T ss_pred             cccCCccchHHHHhhcCCC--CEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH----
Confidence              245  789999999987  8887   8999999 999999999999999974  33         335666544    


Q ss_pred             HcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc
Q 019328          146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK  225 (342)
Q Consensus       146 ~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (342)
                       +|.|.. . ....+.++.|+|+||||+|.||+.+|+++ ++||++|++|||++.+... . ..+       +   ....
T Consensus       141 -~g~~~~-~-~~~~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~d~~~~~~~~-~-~~~-------g---~~~~  204 (300)
T 2rir_A          141 -EGTIML-A-IQHTDYTIHGSQVAVLGLGRTGMTIARTF-AALGANVKVGARSSAHLAR-I-TEM-------G---LVPF  204 (300)
T ss_dssp             -HHHHHH-H-HHTCSSCSTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH-H-HHT-------T---CEEE
T ss_pred             -HHHHHH-H-HHhcCCCCCCCEEEEEcccHHHHHHHHHH-HHCCCEEEEEECCHHHHHH-H-HHC-------C---CeEE
Confidence             333420 0 01245789999999999999999999997 7999999999998754211 1 011       1   1111


Q ss_pred             ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       226 ~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      ...++++++++||+|++|+|+     ++++++.++.||+|+++||++||+.
T Consensus       205 ~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          205 HTDELKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             EGGGHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             chhhHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            135799999999999999996     7899999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.92  E-value=7.9e-26  Score=225.31  Aligned_cols=211  Identities=15%  Similarity=0.113  Sum_probs=163.8

Q ss_pred             eEEEcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 019328           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (342)
Q Consensus        89 ~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktv  168 (342)
                      ++-..|+|+|++  .++.++||.++|++++|. +|||+       .+|+++...+.+..+    |..  ..+..+.|++|
T Consensus       214 vveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g----~~r--~~~~~l~GktV  277 (494)
T 3ce6_A          214 VTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG----INR--GTDALIGGKKV  277 (494)
T ss_dssp             EEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH----HHH--HHCCCCTTCEE
T ss_pred             EEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH----HHh--ccCCCCCcCEE
Confidence            445889999998  788899999999999999 99994       345665544444443    321  22457899999


Q ss_pred             EEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCc
Q 019328          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (342)
Q Consensus       169 GIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~  248 (342)
                      +|+|+|.||+.+|+++ +++|++|+++|+++........         .     ++. ..+++++++++|+|+.|++   
T Consensus       278 ~IiG~G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~A~~---------~-----Ga~-~~~l~e~l~~aDvVi~atg---  338 (494)
T 3ce6_A          278 LICGYGDVGKGCAEAM-KGQGARVSVTEIDPINALQAMM---------E-----GFD-VVTVEEAIGDADIVVTATG---  338 (494)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHH---------T-----TCE-ECCHHHHGGGCSEEEECSS---
T ss_pred             EEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHH---------c-----CCE-EecHHHHHhCCCEEEECCC---
Confidence            9999999999999996 7999999999998765322111         1     111 3578899999999999975   


Q ss_pred             ccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHH-HHHcCCccEEEeecCCCCCCCCC--CccCCCceE----EcCC
Q 019328          249 TTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE-HLKQNPMFRVGLDVFEDEPYMKP--GLSEMKNAI----VVPH  320 (342)
Q Consensus       249 ~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~-aL~~g~i~gaalDV~~~EP~~~~--~L~~~~nvi----~TPH  320 (342)
                       +.++++.+.|+.||+|++++|+||++. +|+++|.+ +|+++++. +++|+|+.++. .+  .|+..+|++    +|||
T Consensus       339 -t~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~-~~~l~LL~~grlvnL~~~TPH  415 (494)
T 3ce6_A          339 -NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT-GRSIIVLSEGRLLNLGNATGH  415 (494)
T ss_dssp             -SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT-CCEEEEEGGGSCHHHHHSCCS
T ss_pred             -CHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc-chHHHHHhCCCEEeccCCCCC
Confidence             667899999999999999999999999 99999998 89888887 66899876432 33  477788998    9999


Q ss_pred             CCCCcHHHHHHHHHHHHhhh
Q 019328          321 IASASKWTREGMATLAALNV  340 (342)
Q Consensus       321 ia~~t~~~~~~~~~~~~~ni  340 (342)
                      +++.+.+++   ...+.+|+
T Consensus       416 ~a~~~~~s~---~~qa~~ai  432 (494)
T 3ce6_A          416 PSFVMSNSF---ANQTIAQI  432 (494)
T ss_dssp             CHHHHHHHH---HHHHHHHH
T ss_pred             ccccchHHH---HHHHHHHH
Confidence            998777653   44444443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.91  E-value=2.1e-23  Score=202.45  Aligned_cols=255  Identities=16%  Similarity=0.138  Sum_probs=178.6

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHH-----------HHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328           29 WINLLIEQDCRVEICTQK--KTILSVEDII-----------ALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~   95 (342)
                      ..+.|.+.|+++.+....  ...++.++..           +.+. ++|+| +....+.++++....+..  .++.....
T Consensus        22 ~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~-~adii-~~vk~p~~~e~~~l~~~~--~l~~~~~~   97 (377)
T 2vhw_A           22 GVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWA-DADLL-LKVKEPIAAEYGRLRHGQ--ILFTFLHL   97 (377)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHH-HCSEE-ECSSCCCGGGGGGCCTTC--EEEECCCG
T ss_pred             HHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhc-cCCEE-EEeCCCChHHHhhcCCCC--EEEEEecc
Confidence            457787888888653221  2345666655           2222 37866 444556666665444443  67777778


Q ss_pred             ccCccChhHHHhCCceEE----------cCCCCCchhHHHHHHHHHHHHH-hchHHHHHHHHcCCCCCCCCCcccccccC
Q 019328           96 GYNNVDVNAANKYGIAVG----------NTPGVLTETTAELAASLSLAAA-RRIVEADEFMRAGLYDGWLPNLFVGNLLK  164 (342)
Q Consensus        96 G~d~id~~~a~~~gI~v~----------n~p~~~~~~vAE~al~l~L~~~-R~~~~~~~~~~~g~w~~w~~~~~~g~~l~  164 (342)
                      ++|...++++.++||.+.          |.|.++  ++||++..+++.+. |++    ...+.|+|..|..    ..++.
T Consensus        98 ~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~~~a~r~l----~~~~~g~~~~~~~----~~~l~  167 (377)
T 2vhw_A           98 AASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAAQVGAYHL----MRTQGGRGVLMGG----VPGVE  167 (377)
T ss_dssp             GGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHHHHHHHHT----SGGGTSCCCCTTC----BTTBC
T ss_pred             cCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHHHHHHHHH----HHhcCCCcccccC----CCCCC
Confidence            899999999999999997          666655  55699985554444 766    3345565532221    13799


Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      |++|+|+|+|.||+.+|+.+ +++|++|+++|+++.... ...+.++..      .........+++++++++|+|+.++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l~-~~~~~~g~~------~~~~~~~~~~l~~~l~~aDvVi~~~  239 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIA-NGMGATVTVLDINIDKLR-QLDAEFCGR------IHTRYSSAYELEGAVKRADLVIGAV  239 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHH-HHHHHTTTS------SEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-HHHHhcCCe------eEeccCCHHHHHHHHcCCCEEEECC
Confidence            99999999999999999996 799999999999876421 111111100      0000001236788899999999976


Q ss_pred             --CCCcccccccCHhHHccCCCCcEEEecC--CCccCCHHHHHHHHHcCCccEEEeecCCC-CCCC-CCCccCCCceE--
Q 019328          245 --VLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDEVALVEHLKQNPMFRVGLDVFED-EPYM-KPGLSEMKNAI--  316 (342)
Q Consensus       245 --plt~~t~~li~~~~l~~mk~gailIN~s--RG~~vd~~aL~~aL~~g~i~gaalDV~~~-EP~~-~~~L~~~~nvi--  316 (342)
                        |.+ +|.++++++.++.||+|+++||+|  +|+                      ||+. ||.+ ++|++.++||+  
T Consensus       240 ~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~  296 (377)
T 2vhw_A          240 LVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFY  296 (377)
T ss_dssp             CCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEE
T ss_pred             CcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEE
Confidence              655 789999999999999999999999  332                      7888 8864 57899999998  


Q ss_pred             EcCCCCCCcHHH
Q 019328          317 VVPHIASASKWT  328 (342)
Q Consensus       317 ~TPHia~~t~~~  328 (342)
                      +|||+++.+..+
T Consensus       297 ~~phl~~~~~~~  308 (377)
T 2vhw_A          297 CVANMPASVPKT  308 (377)
T ss_dssp             CBTTGGGGSHHH
T ss_pred             ecCCcchhhHHH
Confidence            999999988663

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.84  E-value=1.7e-22  Score=197.76  Aligned_cols=150  Identities=21%  Similarity=0.256  Sum_probs=118.8

Q ss_pred             ccc-cCCCEEEEEccChHHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          160 GNL-LKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       160 g~~-l~gktvGIiG~G~IG~~vA~~l~~a-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      |.+ |+||||||+|+|+||+.+|+++ ++ |||+|+++++.....       +             .....+++++++.+
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l-~~~~G~kVv~~sD~~g~~-------~-------------~~~gvdl~~L~~~~  264 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIM-SEDFGMKVVAVSDSKGGI-------Y-------------NPDGLNADEVLKWK  264 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEE-------E-------------EEEEECHHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHH-HHhcCCEEEEEeCCCccc-------c-------------CccCCCHHHHHHHH
Confidence            456 9999999999999999999997 78 999999995332110       0             00113677887766


Q ss_pred             CE-EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC--CCccCCCc
Q 019328          238 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN  314 (342)
Q Consensus       238 Di-V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~--~~L~~~~n  314 (342)
                      |. .++ +|+ ++|++ |+.+.|..||+ .+|||++||.+||+++ +++|+.+.|+++|     +||++.  ++||.++|
T Consensus       265 d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~  334 (419)
T 1gtm_A          265 NEHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKG  334 (419)
T ss_dssp             HHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTT
T ss_pred             HhcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCC
Confidence            54 333 576 67888 89999999998 5999999999999999 6999999999998     899753  58999999


Q ss_pred             eEEcCCC----C-----------------CCcHHHHHHHHHHHHhhh
Q 019328          315 AIVVPHI----A-----------------SASKWTREGMATLAALNV  340 (342)
Q Consensus       315 vi~TPHi----a-----------------~~t~~~~~~~~~~~~~ni  340 (342)
                      |++|||+    |                 |.+.+..++|.....+|+
T Consensus       335 V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~  381 (419)
T 1gtm_A          335 ILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAF  381 (419)
T ss_dssp             CEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHH
Confidence            9999999    6                 456667777777666654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.80  E-value=1.7e-18  Score=167.43  Aligned_cols=271  Identities=15%  Similarity=0.169  Sum_probs=166.4

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHHH----------HhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccc
Q 019328           29 WINLLIEQDCRVEICTQK--KTILSVEDIIA----------LIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G   96 (342)
                      ..+.|.+.|+++.+-...  ...++.++..+          .+  ++|+|+ ....++.++ ++.++. |.++++....+
T Consensus        22 ~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~--~ad~il-~vk~p~~~~-~~~l~~-~~~~~~~~~~~   96 (369)
T 2eez_A           22 GVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW--GAEMVV-KVKEPLPEE-YGFLRE-GLILFTYLHLA   96 (369)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT--TSSEEE-CSSCCCGGG-GGGCCT-TCEEEECCCGG
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee--cCCEEE-EECCCCHHH-HhhcCC-CcEEEEEeccc
Confidence            467787889888653322  13567777664          33  488876 334455444 555532 34888888899


Q ss_pred             cCccChhHHHhCCceEE---cCCCC-Cc----hhHHHHHH--HHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCC
Q 019328           97 YNNVDVNAANKYGIAVG---NTPGV-LT----ETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (342)
Q Consensus        97 ~d~id~~~a~~~gI~v~---n~p~~-~~----~~vAE~al--~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gk  166 (342)
                      .|..+++++.++||.+.   +.+.. ..    .++++.+-  +.+++ ++.+...    ..|+. .|...   ..++.++
T Consensus        97 ~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a-~~~l~~~----~~g~~-~~~~~---~~~l~~~  167 (369)
T 2eez_A           97 ADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVG-AQFLEKP----KGGRG-VLLGG---VPGVAPA  167 (369)
T ss_dssp             GCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHH-HHHTSGG----GTSCC-CCTTC---BTBBCCC
T ss_pred             CCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHH-HHHHHHh----cCCCc-eecCC---CCCCCCC
Confidence            99999999999999997   55543 11    44455444  33333 2223211    11211 11111   1479999


Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      +|+|+|.|.||+.+|+.+ +++|++|+++|+++.... .....++..      .........++++++.++|+|+.|++.
T Consensus       168 ~V~ViGaG~iG~~~a~~l-~~~Ga~V~~~d~~~~~~~-~~~~~~g~~------~~~~~~~~~~l~~~~~~~DvVi~~~g~  239 (369)
T 2eez_A          168 SVVILGGGTVGTNAAKIA-LGMGAQVTILDVNHKRLQ-YLDDVFGGR------VITLTATEANIKKSVQHADLLIGAVLV  239 (369)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHH-HHHHHTTTS------EEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHHH-HHHHhcCce------EEEecCCHHHHHHHHhCCCEEEECCCC
Confidence            999999999999999996 799999999999875421 111111100      000001124677889999999999997


Q ss_pred             Cc-ccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCC-CCCccCCCceE--------
Q 019328          247 DK-TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAI--------  316 (342)
Q Consensus       247 t~-~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi--------  316 (342)
                      +. .+.+++.++.++.||+|+++||++-.             .|   |+ +||+  ||.+ ++|++..+|+.        
T Consensus       240 ~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp  300 (369)
T 2eez_A          240 PGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMP  300 (369)
T ss_dssp             ------CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSG
T ss_pred             CccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcc
Confidence            76 68889999999999999999999821             12   44 9998  6643 56889999999        


Q ss_pred             -EcCCCCCC--cHHHHHHHHHHHHhhh
Q 019328          317 -VVPHIASA--SKWTREGMATLAALNV  340 (342)
Q Consensus       317 -~TPHia~~--t~~~~~~~~~~~~~ni  340 (342)
                       .|||+|+.  +.+....+..++.+|+
T Consensus       301 ~~~p~~as~~~~~~~~~~l~~l~~~g~  327 (369)
T 2eez_A          301 GAVPRTSTFALTNQTLPYVLKLAEKGL  327 (369)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhcHHHHHHHHHHHHHHHHHHHHhcCh
Confidence             88998884  5666777877777664

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.79  E-value=1e-18  Score=170.52  Aligned_cols=157  Identities=19%  Similarity=0.265  Sum_probs=116.3

Q ss_pred             EcccccCccC-hhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI  170 (342)
                      -.++|+..+. +.++.+.+|+|.|++.....+..+...+..-++.+.+      .+.           .+.++.||||||
T Consensus       154 eTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi------~ra-----------tg~~L~GktVgI  216 (436)
T 3h9u_A          154 ETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI------KRA-----------TDVMIAGKTACV  216 (436)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH------HHH-----------HCCCCTTCEEEE
T ss_pred             ccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHH------HHh-----------cCCcccCCEEEE
Confidence            3456665542 3455678999999987555554444333322222222      111           246899999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      +|+|.||+.+|++| ++|||+|+++|+++.........              +. ...++++++++||+|++    ++.|
T Consensus       217 iG~G~IG~~vA~~L-ka~Ga~Viv~D~~p~~a~~A~~~--------------G~-~~~sL~eal~~ADVVil----t~gt  276 (436)
T 3h9u_A          217 CGYGDVGKGCAAAL-RGFGARVVVTEVDPINALQAAME--------------GY-QVLLVEDVVEEAHIFVT----TTGN  276 (436)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHT--------------TC-EECCHHHHTTTCSEEEE----CSSC
T ss_pred             EeeCHHHHHHHHHH-HHCCCEEEEECCChhhhHHHHHh--------------CC-eecCHHHHHhhCCEEEE----CCCC
Confidence            99999999999997 79999999999987543222111              11 23589999999999996    4678


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHH
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~a  285 (342)
                      +++|+++.|+.||+|++|||+|||.+ ||.++|.+.
T Consensus       277 ~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          277 DDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             SCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             cCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            99999999999999999999999998 999999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.77  E-value=2e-18  Score=168.64  Aligned_cols=237  Identities=14%  Similarity=0.123  Sum_probs=152.8

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHHHH---------hcCCccEEEecCCcCccHHHHHHhhccCCceEEEccccc
Q 019328           29 WINLLIEQDCRVEICTQK--KTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~   97 (342)
                      ..+.|.+.|+++.+....  ...++.++..+.         +- .+|+++.. ..+ .++.++.++. ++++|+..+.|+
T Consensus        29 ~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~-~adiil~v-k~p-~~~~i~~l~~-~~~li~~~~~~~  104 (401)
T 1x13_A           29 TVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVW-QSEIILKV-NAP-LDDEIALLNP-GTTLVSFIWPAQ  104 (401)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGG-SSSEEECS-SCC-CHHHHTTCCT-TCEEEECCCGGG
T ss_pred             HHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHh-cCCeEEEe-CCC-CHHHHHHhcC-CCcEEEEecCCC
Confidence            456777889888654322  124566776643         32 37887753 333 4666777632 349999999999


Q ss_pred             CccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHH--HHHHHcCCC--CCCCCCc--ccccccCCCEEEEE
Q 019328           98 NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA--DEFMRAGLY--DGWLPNL--FVGNLLKGQTVGVI  171 (342)
Q Consensus        98 d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~--~~~~~~g~w--~~w~~~~--~~g~~l~gktvGIi  171 (342)
                      |++|++++.++||+|.+     .++|+|++.++.|.+++.+...  ...++.+.|  ..|....  ..| ++.|++|+|+
T Consensus       105 d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g-~l~g~~V~Vi  178 (401)
T 1x13_A          105 NPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAG-KVPPAKVMVI  178 (401)
T ss_dssp             CHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTE-EECCCEEEEE
T ss_pred             CHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeecc-CcCCCEEEEE
Confidence            99999999999999953     5566666665533333322221  233443333  1221110  012 5889999999


Q ss_pred             ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCC-----CCcccc---c-------cCCHHHHhhc
Q 019328          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-----QPVTWK---R-------ASSMDEVLRE  236 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~-------~~~l~ell~~  236 (342)
                      |+|.||..+++.+ +++|++|+++|+++......  ..++.....-..     ..-++.   .       ..+++++++.
T Consensus       179 GaG~iG~~aa~~a-~~~Ga~V~v~D~~~~~~~~~--~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~  255 (401)
T 1x13_A          179 GAGVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQV--QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKE  255 (401)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCGGGHHHH--HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHH--HHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCC
Confidence            9999999999996 79999999999987642211  111110000000     000000   0       0147788999


Q ss_pred             CCEEEEc--CCCCcccccccCHhHHccCCCCcEEEecC--CCccCCH
Q 019328          237 ADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (342)
Q Consensus       237 sDiV~l~--lplt~~t~~li~~~~l~~mk~gailIN~s--RG~~vd~  279 (342)
                      +|+|+.|  +|. ..+.++++++.++.||+|+++||+|  ||+.+++
T Consensus       256 aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          256 VDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             CSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             CCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            9999999  554 3467899999999999999999999  8887765

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.75  E-value=9.3e-18  Score=163.59  Aligned_cols=156  Identities=15%  Similarity=0.207  Sum_probs=113.8

Q ss_pred             EcccccCccC-hhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI  170 (342)
                      -.++|+-++- ........+++.|+.+    ++..+-+-....+.+.+....  .|.           .+.++.|||+||
T Consensus       190 eTtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI--~Ra-----------tg~~L~GKTVgV  252 (464)
T 3n58_A          190 ETTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGI--RRG-----------TDVMMAGKVAVV  252 (464)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHH--HHH-----------HCCCCTTCEEEE
T ss_pred             ccccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHH--HHh-----------cCCcccCCEEEE
Confidence            4456665432 2223345688888765    555555555555544443222  111           246899999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      +|+|.||+.+|+++ ++|||+|+++|+++.........              ++ ...++++++++||+|+++.    .|
T Consensus       253 IG~G~IGr~vA~~l-rafGa~Viv~d~dp~~a~~A~~~--------------G~-~vv~LeElL~~ADIVv~at----gt  312 (464)
T 3n58_A          253 CGYGDVGKGSAQSL-AGAGARVKVTEVDPICALQAAMD--------------GF-EVVTLDDAASTADIVVTTT----GN  312 (464)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHT--------------TC-EECCHHHHGGGCSEEEECC----SS
T ss_pred             ECcCHHHHHHHHHH-HHCCCEEEEEeCCcchhhHHHhc--------------Cc-eeccHHHHHhhCCEEEECC----CC
Confidence            99999999999996 89999999999887543222111              11 2358999999999999863    47


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHH
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~  284 (342)
                      +++|+++.|++||+|++|||+|||.+ +|.++|.+
T Consensus       313 ~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          313 KDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             SSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             ccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            99999999999999999999999998 99999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.73  E-value=4.4e-17  Score=158.24  Aligned_cols=239  Identities=14%  Similarity=0.163  Sum_probs=148.8

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHH-----------HHhcCCccEEEecCCcCc----cHHHHHHhhccCCceEE
Q 019328           29 WINLLIEQDCRVEICTQKK--TILSVEDII-----------ALIGDKCDGVIGQLTEDW----GETLFAALSRAGGKAFS   91 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~~-----------~~~~~~~d~~i~~~~~~~----~~~~~~~~~~l~~k~i~   91 (342)
                      ..+.|.+.|+++.+.....  ..++.++..           +.+. ++|+++.. ..++    +++.++.++. +.++++
T Consensus        22 ~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~-~adiil~v-~~p~~~~~~~~~i~~l~~-~~~~i~   98 (384)
T 1l7d_A           22 VVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALS-QADVVWKV-QRPMTAEEGTDEVALIKE-GAVLMC   98 (384)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHS-SCSEEEEE-ECCCCGGGSCCGGGGSCT-TCEEEE
T ss_pred             HHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhc-CCCEEEEe-cCcccccCCHHHHHhhcc-CCEEEE
Confidence            4567777888876533221  245555554           3444 48988754 3344    5777787764 348898


Q ss_pred             EcccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC--CCCCCcccc-cccCCCEE
Q 019328           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD--GWLPNLFVG-NLLKGQTV  168 (342)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~--~w~~~~~~g-~~l~gktv  168 (342)
                      ....+.|+.+++++.++||.+++. +...+.+++..+. +|+..+.+ ..+..+..+.|.  .|.+....+ .++.|++|
T Consensus        99 ~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V  175 (384)
T 1l7d_A           99 HLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPARV  175 (384)
T ss_dssp             ECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCCEE
T ss_pred             EecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCCEE
Confidence            999999999999999999999984 2222222222332 23333332 222333333331  122211112 37899999


Q ss_pred             EEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhc---cCC----CCCcccccc----------CCHH
Q 019328          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANG----EQPVTWKRA----------SSMD  231 (342)
Q Consensus       169 GIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~----------~~l~  231 (342)
                      +|+|.|.||+.+++.+ +++|++|+++|+++......  ..++....   ...    ...-++...          ..++
T Consensus       176 ~ViGaG~iG~~aa~~a-~~~Ga~V~~~d~~~~~~~~~--~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~  252 (384)
T 1l7d_A          176 LVFGVGVAGLQAIATA-KRLGAVVMATDVRAATKEQV--ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  252 (384)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCSTTHHHH--HHTTCEECCC-----------------------CCHHHHHH
T ss_pred             EEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence            9999999999999996 79999999999987542111  11221000   000    000000000          1278


Q ss_pred             HHhhcCCEEEEcC--CCCcccccccCHhHHccCCCCcEEEecC--CCccC
Q 019328          232 EVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (342)
Q Consensus       232 ell~~sDiV~l~l--plt~~t~~li~~~~l~~mk~gailIN~s--RG~~v  277 (342)
                      ++++.+|+|+.|+  |.+ .+.++++++.++.||+|+++||++  ||+.+
T Consensus       253 ~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          253 KELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             HHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence            8899999999887  443 356789999999999999999999  87654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.68  E-value=1.8e-16  Score=154.29  Aligned_cols=154  Identities=18%  Similarity=0.292  Sum_probs=107.9

Q ss_pred             cccccCccC-hhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 019328           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        93 ~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIi  171 (342)
                      ..+|+-++- .....+..++|.|+.+..+.+--+    ....+...+..   .+++          ..+.++.||+++|+
T Consensus       164 TttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fD----n~yGt~~s~~~---gi~r----------at~~~L~GktV~Vi  226 (435)
T 3gvp_A          164 SVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFD----NLYCCRESILD---GLKR----------TTDMMFGGKQVVVC  226 (435)
T ss_dssp             CHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHH----THHHHHHHHHH---HHHH----------HHCCCCTTCEEEEE
T ss_pred             cchhHHHHHHHHHcCCCCCCEEEecchhhhhhhh----hhhhhHHHHHH---HHHH----------hhCceecCCEEEEE
Confidence            455554432 233345679999988854443333    22222211111   1111          12458999999999


Q ss_pred             ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019328          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~  251 (342)
                      |+|.||+.+|+++ ++||++|+++|+++........+              ++ ...++++++++||+|++|    +.|+
T Consensus       227 G~G~IGk~vA~~L-ra~Ga~Viv~D~dp~ra~~A~~~--------------G~-~v~~Leeal~~ADIVi~a----tgt~  286 (435)
T 3gvp_A          227 GYGEVGKGCCAAL-KAMGSIVYVTEIDPICALQACMD--------------GF-RLVKLNEVIRQVDIVITC----TGNK  286 (435)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHT--------------TC-EECCHHHHTTTCSEEEEC----SSCS
T ss_pred             eeCHHHHHHHHHH-HHCCCEEEEEeCChhhhHHHHHc--------------CC-EeccHHHHHhcCCEEEEC----CCCc
Confidence            9999999999997 89999999999987543222111              11 235899999999999995    5689


Q ss_pred             cccCHhHHccCCCCcEEEecCCCcc-CCHHHHH
Q 019328          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (342)
Q Consensus       252 ~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~  283 (342)
                      ++|+++.|+.||+|+++||+|||++ +|.++|.
T Consensus       287 ~lI~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          287 NVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             CSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             ccCCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            9999999999999999999999998 7877774

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.68  E-value=4.4e-18  Score=166.38  Aligned_cols=197  Identities=15%  Similarity=0.230  Sum_probs=144.3

Q ss_pred             ceEEEcccccCccChhHHH-----hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC-CCCCCcccc-
Q 019328           88 KAFSNMAVGYNNVDVNAAN-----KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVG-  160 (342)
Q Consensus        88 k~i~~~g~G~d~id~~~a~-----~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~-~w~~~~~~g-  160 (342)
                      +.|...|+|+|++++.++.     ++++.++|.+|. ..+++++.+..++.+.|++...... ..+.|. .|......+ 
T Consensus        83 ~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~av~~a~~  160 (404)
T 1gpj_A           83 RHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAAVELAER  160 (404)
T ss_dssp             HHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHHHHHHHH
T ss_pred             hhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHHHHHHHH
Confidence            7788889999999999887     889999999997 5789999999999999998654322 223331 110000001 


Q ss_pred             --cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          161 --NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       161 --~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                        .++.|++|+|+|+|.||+.+++.+ +++|+ +|+++||+..+. +++...++.          ......++++++..+
T Consensus       161 ~~~~l~g~~VlIiGaG~iG~~~a~~l-~~~G~~~V~v~~r~~~ra-~~la~~~g~----------~~~~~~~l~~~l~~a  228 (404)
T 1gpj_A          161 ELGSLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDLGG----------EAVRFDELVDHLARS  228 (404)
T ss_dssp             HHSCCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHHTC----------EECCGGGHHHHHHTC
T ss_pred             HhccccCCEEEEEChHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHcCC----------ceecHHhHHHHhcCC
Confidence              158999999999999999999997 68999 999999987542 122222211          011124688889999


Q ss_pred             CEEEEcCCCCcccccccCHhHHcc--CC----CCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC-CCCCcc
Q 019328          238 DVISLHPVLDKTTYHLINKERLAT--MK----KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLS  310 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~--mk----~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~-~~~~L~  310 (342)
                      |+|+.|+|   .+..+++++.++.  ||    ++.++||++                             +|. .+++++
T Consensus       229 DvVi~at~---~~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~  276 (404)
T 1gpj_A          229 DVVVSATA---APHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVE  276 (404)
T ss_dssp             SEEEECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGG
T ss_pred             CEEEEccC---CCCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCcccc
Confidence            99999976   4456778777876  42    556777765                             365 357899


Q ss_pred             CCCceEE--cCCCCCCcHHHHH
Q 019328          311 EMKNAIV--VPHIASASKWTRE  330 (342)
Q Consensus       311 ~~~nvi~--TPHia~~t~~~~~  330 (342)
                      ++|||++  |||+++.+.++.+
T Consensus       277 ~l~~v~l~d~d~l~~~~~~~~~  298 (404)
T 1gpj_A          277 NIEDVEVRTIDDLRVIARENLE  298 (404)
T ss_dssp             GSTTEEEEEHHHHHHHHHHHHH
T ss_pred             ccCCeEEEeHhhHHHHHHHHHH
Confidence            9999999  9999998887654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.36  E-value=8.8e-13  Score=124.13  Aligned_cols=119  Identities=13%  Similarity=0.045  Sum_probs=92.7

Q ss_pred             cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      ..+....++|||||+|.||..+|+.| ...|.+|.+|||++..... +.        .     .+.....+++++++.||
T Consensus        15 ~~~~~~m~~I~iIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~-l~--------~-----~g~~~~~~~~~~~~~aD   79 (310)
T 3doj_A           15 VPRGSHMMEVGFLGLGIMGKAMSMNL-LKNGFKVTVWNRTLSKCDE-LV--------E-----HGASVCESPAEVIKKCK   79 (310)
T ss_dssp             ---CCCSCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGGHH-HH--------H-----TTCEECSSHHHHHHHCS
T ss_pred             CcccccCCEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HH--------H-----CCCeEcCCHHHHHHhCC
Confidence            34556678999999999999999998 5789999999998764321 11        1     11233578999999999


Q ss_pred             EEEEcCCCCccccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          239 VISLHPVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       239 iV~l~lplt~~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|++|+|...+++.++  .++.+..+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        80 vvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           80 YTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9999999766777666  25567789999999999999998889999998876443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.35  E-value=9.8e-13  Score=123.50  Aligned_cols=112  Identities=18%  Similarity=0.194  Sum_probs=93.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      |+||+||+|.||..+|++| ..-|.+|.+|||++++.. .+.+             .+.....++.|+++.||+|++|+|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L-~~~G~~v~v~dr~~~~~~-~l~~-------------~Ga~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAVD-GLVA-------------AGASAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHHH-HHHH-------------TTCEECSSHHHHHTTCSEEEECCS
T ss_pred             CEEEEeeehHHHHHHHHHH-HhCCCeEEEEcCCHHHHH-HHHH-------------cCCEEcCCHHHHHhcCCceeecCC
Confidence            6899999999999999998 467999999999986532 2211             123456799999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ..++.+.++.  ...++.+++|.++||+|+..+-+...+.+.+++..+.
T Consensus        69 ~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~  117 (300)
T 3obb_A           69 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA  117 (300)
T ss_dssp             CHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             chHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9988888773  3478899999999999999999999999999987654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.35  E-value=3.6e-12  Score=121.93  Aligned_cols=109  Identities=23%  Similarity=0.291  Sum_probs=88.5

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sDiV  240 (342)
                      ++.||||+|+|+|+||+.+|+++ ++|||+|+++|+++..  .++.+.++            . ...+++++++ .||++
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l-~~~GakVvvsD~~~~~--~~~a~~~g------------a-~~v~~~ell~~~~DIl  235 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTER--VAHAVALG------------H-TAVALEDVLSTPCDVF  235 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH--HHHHHHTT------------C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCccH--HHHHHhcC------------C-EEeChHHhhcCcccee
Confidence            79999999999999999999997 7999999999998643  22222211            1 1246788888 99999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      +.     .++.++|+++.++.|| ..+++|.+|+++.++++ .++|+++.+..
T Consensus       236 iP-----~A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIlv  281 (355)
T 1c1d_A          236 AP-----CAMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGILY  281 (355)
T ss_dssp             EE-----CSCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCEE
T ss_pred             cH-----hHHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEEE
Confidence            84     3689999999999998 78999999999999888 58999887543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.32  E-value=6.5e-12  Score=118.34  Aligned_cols=131  Identities=14%  Similarity=0.058  Sum_probs=84.9

Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh-hhHHHHHHhhhhhhhccCCC
Q 019328          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGE  219 (342)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~  219 (342)
                      ++..+.+.|..|.+.... .....++|||||+|.||..+|+.| ...|. +|++||+++ ....+... .          
T Consensus         2 ~~~~~~~~~~~~~~~~~~-~~~~~~~I~iIG~G~mG~~~A~~L-~~~G~~~V~~~dr~~~~~~~~~~~-~----------   68 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLY-FQSNAMKLGFIGFGEAASAIASGL-RQAGAIDMAAYDAASAESWRPRAE-E----------   68 (312)
T ss_dssp             ------------------------CEEEEECCSHHHHHHHHHH-HHHSCCEEEEECSSCHHHHHHHHH-H----------
T ss_pred             CcccccccccccCccccc-ccCCCCEEEEECccHHHHHHHHHH-HHCCCCeEEEEcCCCCHHHHHHHH-H----------
Confidence            456778888666543221 234567999999999999999998 46688 999999973 22222111 1          


Q ss_pred             CCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       220 ~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                        .+.....++++++++||+|++|+|......- + .+....++++.++||+++.......++.+.+.+.
T Consensus        69 --~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~-~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           69 --LGVSCKASVAEVAGECDVIFSLVTAQAALEV-A-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             --TTCEECSCHHHHHHHCSEEEECSCTTTHHHH-H-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             --CCCEEeCCHHHHHhcCCEEEEecCchhHHHH-H-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence              1123356899999999999999997665442 2 6677889999999999999999999999988875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.32  E-value=1.8e-12  Score=121.82  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .++..++|||||+|.||+.+|+.| ...|.+|++|||++.+... +.+        .     +.....++++++++||+|
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~-~~~--------~-----g~~~~~~~~e~~~~aDvV   69 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVL-LKQGKRVAIWNRSPGKAAA-LVA--------A-----GAHLCESVKAALSASPAT   69 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHHHH-HHH--------H-----TCEECSSHHHHHHHSSEE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-HHH--------C-----CCeecCCHHHHHhcCCEE
Confidence            356678999999999999999998 5789999999999764321 111        0     123357899999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ++|+|...+++.++.++.+..+++|.++||++++.+.+.+.+.+.+++..+.
T Consensus        70 i~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           70 IFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             EECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             EEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            9999977778887754346667899999999999999999999999876543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.32  E-value=2.6e-10  Score=109.82  Aligned_cols=249  Identities=12%  Similarity=0.130  Sum_probs=138.9

Q ss_pred             CCCCCeEEEEeCCCCc--------hHHHHHHHhCCCeEEEecCC--CCCCCHHHHHHHhc-----CCccEEEecCCcCcc
Q 019328           11 NPNGKYRVVSTKPMPG--------TRWINLLIEQDCRVEICTQK--KTILSVEDIIALIG-----DKCDGVIGQLTEDWG   75 (342)
Q Consensus        11 ~~~~~~kvl~~~~~~~--------~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~d~~i~~~~~~~~   75 (342)
                      .|-++|+|-+.+....        ....+.|.+.|+++.+-...  ...++.++..+.=.     +.+|.|+. ... .+
T Consensus        18 ~~~~~m~IgvpkE~~~~E~RValtP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlk-Vk~-p~   95 (381)
T 3p2y_A           18 GPGSMTLIGVPRESAEGERRVALVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVK-VNP-PT   95 (381)
T ss_dssp             --CTTCEEEECCCCSTTCCCCSSCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEEC-SSC-CC
T ss_pred             CCCcceEEEEEecCCCCCceecCCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEE-eCC-CC
Confidence            3566777766432211        23467787889988764432  23567777764311     12565543 222 24


Q ss_pred             HHHHHHhhccCCceEEEcc-cccCccChhHHHhCCceEEc---CCCCC-c------hhHHHHHHHHHHHHHhchHHHHHH
Q 019328           76 ETLFAALSRAGGKAFSNMA-VGYNNVDVNAANKYGIAVGN---TPGVL-T------ETTAELAASLSLAAARRIVEADEF  144 (342)
Q Consensus        76 ~~~~~~~~~l~~k~i~~~g-~G~d~id~~~a~~~gI~v~n---~p~~~-~------~~vAE~al~l~L~~~R~~~~~~~~  144 (342)
                      ++-++.++. | +.+..+- ...|.=-++++.++||...-   .|... +      .++||.+=.      +-.......
T Consensus        96 ~~e~~~l~~-g-~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy------~Av~~aa~~  167 (381)
T 3p2y_A           96 SDEISQLKP-G-SVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGY------KAVLLGASL  167 (381)
T ss_dssp             HHHHTTSCT-T-CEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHH------HHHHHHHHH
T ss_pred             hhHHhhccC-C-CEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHH------HHHHHHHHH
Confidence            455566654 2 4444332 22233234777889988744   33211 1      223333221      111111111


Q ss_pred             HHcCCCCCCCCCcccc-cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc-----CC
Q 019328          145 MRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-----NG  218 (342)
Q Consensus       145 ~~~g~w~~w~~~~~~g-~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-----~~  218 (342)
                        -+.   ..+....+ ..+.+++|+|+|+|.||..+|+.+ +++|++|++||+++......  ..++.....     .+
T Consensus       168 --l~~---~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l~~~--~~lGa~~~~l~~~~~~  239 (381)
T 3p2y_A          168 --STR---FVPMLTTAAGTVKPASALVLGVGVAGLQALATA-KRLGAKTTGYDVRPEVAEQV--RSVGAQWLDLGIDAAG  239 (381)
T ss_dssp             --CSS---CSSCEECSSCEECCCEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSGGGHHHH--HHTTCEECCCC-----
T ss_pred             --hhh---hhhhhhcccCCcCCCEEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HHcCCeEEeccccccc
Confidence              111   00111111 357899999999999999999996 79999999999997642211  112110000     00


Q ss_pred             CCCc--------cccccCCHHHHhhcCCEEEEcC--CCCcccccccCHhHHccCCCCcEEEecC--CCccCC
Q 019328          219 EQPV--------TWKRASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (342)
Q Consensus       219 ~~~~--------~~~~~~~l~ell~~sDiV~l~l--plt~~t~~li~~~~l~~mk~gailIN~s--RG~~vd  278 (342)
                      ....        ......++++++++||+|+.++  |. ..+.++++++.++.||||+++||+|  +|+.+.
T Consensus       240 ~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e  310 (381)
T 3p2y_A          240 EGGYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE  310 (381)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             cccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence            0000        0011236789999999999875  53 3467899999999999999999998  666554

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.32  E-value=2.2e-12  Score=120.90  Aligned_cols=114  Identities=11%  Similarity=0.126  Sum_probs=91.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||..+|++|+ .-|.+|++|||++++.. .             ....+.....++.|+++.||+|++|+|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~-~~G~~V~v~dr~~~~~~-~-------------l~~~G~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILL-EAGYELVVWNRTASKAE-P-------------LTKLGATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEC-------C-T-------------TTTTTCEECSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEecHHHHHHHHHHHH-HCCCeEEEEeCCHHHHH-H-------------HHHcCCeEeCCHHHHHhcCCceeeecc
Confidence            58999999999999999984 67999999999876421 1             112234456799999999999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      ..+..+..+....+..+++|.++|++|...+-+.+.+.+.+.+..+...
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l  119 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV  119 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence            8888888888889999999999999999999999999999998765443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.30  E-value=2.1e-11  Score=115.08  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-HhhcCC
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~sD  238 (342)
                      .+..++|||||+|.||+.+|+.| +..|.  +|++||+++......  ..       .+.   ......++++ ++++||
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~~~a--~~-------~G~---~~~~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKA--VD-------LGI---IDEGTTSIAKVEDFSPD   96 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHH--HH-------TTS---CSEEESCTTGGGGGCCS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHHHHH--HH-------CCC---cchhcCCHHHHhhccCC
Confidence            45568999999999999999997 57788  999999987643221  11       111   1112357888 899999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC---C-CCCCccCCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP---Y-MKPGLSEMKN  314 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP---~-~~~~L~~~~n  314 (342)
                      +|++|+|... +..++ ++....+++++++++++.......+++.+.+.. ++.+. -=++-.|-   . ....|+.-..
T Consensus        97 vVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~~  172 (314)
T 3ggo_A           97 FVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGKK  172 (314)
T ss_dssp             EEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTCE
T ss_pred             EEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCCE
Confidence            9999999543 44444 566677999999999987765445666666654 22221 11332221   1 1236888889


Q ss_pred             eEEcCCCCCCcHHHHHHHHHH
Q 019328          315 AIVVPHIASASKWTREGMATL  335 (342)
Q Consensus       315 vi~TPHia~~t~~~~~~~~~~  335 (342)
                      +++||+- +.+.+..+.+...
T Consensus       173 ~il~~~~-~~~~~~~~~v~~l  192 (314)
T 3ggo_A          173 VILTPTK-KTDKKRLKLVKRV  192 (314)
T ss_dssp             EEECCCT-TSCHHHHHHHHHH
T ss_pred             EEEEeCC-CCCHHHHHHHHHH
Confidence            9999984 3455655554443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.28  E-value=6.6e-12  Score=118.66  Aligned_cols=116  Identities=13%  Similarity=0.082  Sum_probs=92.9

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ....++|||||+|.||+.+|+.| ...|.+|.+|||++.+.. .+.        ..     +.....++++++++||+|+
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~-~l~--------~~-----g~~~~~~~~e~~~~aDvVi   92 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRL-CEAGYALQVWNRTPARAA-SLA--------AL-----GATIHEQARAAARDADIVV   92 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHH-HHTTCEEEEECSCHHHHH-HHH--------TT-----TCEEESSHHHHHTTCSEEE
T ss_pred             ccCCCEEEEECccHHHHHHHHHH-HhCCCeEEEEcCCHHHHH-HHH--------HC-----CCEeeCCHHHHHhcCCEEE
Confidence            34678999999999999999998 578999999999976432 111        11     2234578999999999999


Q ss_pred             EcCCCCcccccccCH-hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          242 LHPVLDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       242 l~lplt~~t~~li~~-~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|+|....++.++.. +.+..+++|.++||++++.+.+.+.+.+.+.+..+.
T Consensus        93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  144 (320)
T 4dll_A           93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA  144 (320)
T ss_dssp             ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence            999977777776643 567789999999999999999999999999886554

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.27  E-value=4e-11  Score=110.74  Aligned_cols=150  Identities=16%  Similarity=0.131  Sum_probs=101.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sDiV~l  242 (342)
                      ++|||||+|.||+.+|+.| ...|.  +|++||+++..... . ..+       +..   .....+++++++ +||+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~~~-~-~~~-------g~~---~~~~~~~~~~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISK-A-VDL-------GII---DEGTTSIAKVEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHH-H-HHT-------TSC---SEEESCGGGGGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHH-HhcCCCcEEEEEeCCHHHHHH-H-HHC-------CCc---ccccCCHHHHhcCCCCEEEE
Confidence            5899999999999999997 56777  99999998754321 1 111       111   011357888889 9999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCC---CC-CCCccCCCceEEc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP---YM-KPGLSEMKNAIVV  318 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP---~~-~~~L~~~~nvi~T  318 (342)
                      |+|.. .+..++. +....+++++++++++++.....+.+.+.+.++-+.+  .-++..|.   .. ..+|+..++++++
T Consensus        69 avp~~-~~~~v~~-~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~  144 (281)
T 2g5c_A           69 SSPVR-TFREIAK-KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILT  144 (281)
T ss_dssp             CSCHH-HHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEEC
T ss_pred             cCCHH-HHHHHHH-HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEe
Confidence            99943 4555543 4566789999999999988766677888887641111  12343332   11 2367788889999


Q ss_pred             CCCCCCcHHHHHHHH
Q 019328          319 PHIASASKWTREGMA  333 (342)
Q Consensus       319 PHia~~t~~~~~~~~  333 (342)
                      ||.++ +.+..+.+.
T Consensus       145 ~~~~~-~~~~~~~v~  158 (281)
T 2g5c_A          145 PTKKT-DKKRLKLVK  158 (281)
T ss_dssp             CCSSS-CHHHHHHHH
T ss_pred             cCCCC-CHHHHHHHH
Confidence            99765 344444443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.26  E-value=7.7e-11  Score=109.38  Aligned_cols=157  Identities=13%  Similarity=0.078  Sum_probs=105.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh----hhhhccC-CCCC-------ccccccCCHHHH
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY----GQFLKAN-GEQP-------VTWKRASSMDEV  233 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~----~~~~~~~-~~~~-------~~~~~~~~l~el  233 (342)
                      ++|||||.|.||+.+|+.+ ...|++|++||++++..... .+..    ....... +...       .......+++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQT-AFHGFAVTAYDINTDALDAA-KKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHHHH-HHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHHHHHH-HHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            6899999999999999997 47799999999997642211 1110    0000000 0000       001234688999


Q ss_pred             hhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC
Q 019328          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (342)
Q Consensus       234 l~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~  313 (342)
                      +++||+|+.++|.+.+.+..+.++..+.+++++++++.+.+  +....+.+++... -...++..|.       |.+..+
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~  152 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNN  152 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSC
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCc
Confidence            99999999999988778877777888889999999954444  3567888887543 3556666553       456678


Q ss_pred             ceEEcCCCCCCcHHHHHHHHHH
Q 019328          314 NAIVVPHIASASKWTREGMATL  335 (342)
Q Consensus       314 nvi~TPHia~~t~~~~~~~~~~  335 (342)
                      .+.++||- ..+.+..+.+...
T Consensus       153 lvevv~~~-~t~~~~~~~~~~l  173 (283)
T 4e12_A          153 TAEVMGTT-KTDPEVYQQVVEF  173 (283)
T ss_dssp             EEEEEECT-TSCHHHHHHHHHH
T ss_pred             eEEEEeCC-CCCHHHHHHHHHH
Confidence            88899984 3345555544443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.25  E-value=1.9e-11  Score=117.45  Aligned_cols=123  Identities=15%  Similarity=0.237  Sum_probs=96.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC---C
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA---D  238 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s---D  238 (342)
                      .+.+++|||||+|.||+.+|+.| ...|.+|.+|||++.... .+.        ..     +.....+++++++.+   |
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L-~~~G~~V~v~dr~~~~~~-~l~--------~~-----g~~~~~s~~e~~~~a~~~D   83 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRL-RKGGHECVVYDLNVNAVQ-ALE--------RE-----GIAGARSIEEFCAKLVKPR   83 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHH-HHH--------TT-----TCBCCSSHHHHHHHSCSSC
T ss_pred             hhcCCEEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-HHH--------HC-----CCEEeCCHHHHHhcCCCCC
Confidence            35678999999999999999998 578999999999876432 111        11     123356899999999   9


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~  301 (342)
                      +|++|+|.. .++.++ .+.+..+++|.++|+++++...+...+.+.+.+..+......|+-.
T Consensus        84 vVi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           84 VVWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             EEEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             EEEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            999999976 677766 5677889999999999999999999999999987776555555543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.25  E-value=2.1e-11  Score=111.99  Aligned_cols=197  Identities=17%  Similarity=0.127  Sum_probs=127.0

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC---CccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHH
Q 019328           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGD---KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (342)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~  106 (342)
                      ...+++.|.+..+...   ..+++++.+.+..   ..+++.+.  .+..++++..++++  +.+++...|+|.++.    
T Consensus        21 ~~~~~~~g~~~~y~~~---~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~~~l--~~~a~~~gavn~i~~----   89 (263)
T 2d5c_A           21 AFALESLGLEGSYEAW---DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHLDWV--SPEAQRIGAVNTVLQ----   89 (263)
T ss_dssp             HHHHHHTTCCEEEEEE---ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHHcCCCCEEEEE---eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHHHHH--hHHHHHhCCCCcEEc----
Confidence            3456677877655432   1344555544431   13444443  35667777777765  666777788998875    


Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      +.|    +..|+|++.     .+++.++.|          .            +.++.| +++|||.|.||+.+|+.| .
T Consensus        90 ~~g----~~~g~ntd~-----~g~~~~l~~----------~------------~~~l~~-~v~iiG~G~~g~~~a~~l-~  136 (263)
T 2d5c_A           90 VEG----RLFGFNTDA-----PGFLEALKA----------G------------GIPLKG-PALVLGAGGAGRAVAFAL-R  136 (263)
T ss_dssp             ETT----EEEEECCHH-----HHHHHHHHH----------T------------TCCCCS-CEEEECCSHHHHHHHHHH-H
T ss_pred             cCC----eEEEeCCCH-----HHHHHHHHH----------h------------CCCCCC-eEEEECCcHHHHHHHHHH-H
Confidence            334    223555543     244444332          1            236889 999999999999999997 5


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC--cccccccCHhHHccCCC
Q 019328          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD--KTTYHLINKERLATMKK  264 (342)
Q Consensus       187 a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt--~~t~~li~~~~l~~mk~  264 (342)
                      ..|++|.++||+.++. +.+.+.++       .     . ..+++++ +++|+|++|+|..  +++...+.   .+.+++
T Consensus       137 ~~g~~v~v~~r~~~~~-~~l~~~~~-------~-----~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~  198 (263)
T 2d5c_A          137 EAGLEVWVWNRTPQRA-LALAEEFG-------L-----R-AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPE  198 (263)
T ss_dssp             HTTCCEEEECSSHHHH-HHHHHHHT-------C-----E-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCS
T ss_pred             HCCCEEEEEECCHHHH-HHHHHHhc-------c-----c-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCC
Confidence            7889999999987542 22222221       0     1 2477888 9999999999976  23334453   467899


Q ss_pred             CcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          265 EAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       265 gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      |.++++++.+. .+. .|.+++++..
T Consensus       199 g~~viD~~~~p-~~t-~l~~~a~~~g  222 (263)
T 2d5c_A          199 EGAAVDLVYRP-LWT-RFLREAKAKG  222 (263)
T ss_dssp             SSEEEESCCSS-SSC-HHHHHHHHTT
T ss_pred             CCEEEEeecCC-ccc-HHHHHHHHCc
Confidence            99999999874 344 4777777643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.23  E-value=1.1e-11  Score=115.15  Aligned_cols=112  Identities=16%  Similarity=0.059  Sum_probs=90.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|.+|||++.... .+.        ..     +.....++++++++||+|++|+|
T Consensus         2 ~~i~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~-~~~--------~~-----g~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNL-VKAGCSVTIWNRSPEKAE-ELA--------AL-----GAERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGGH-HHH--------HT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HHH--------HC-----CCeecCCHHHHHhcCCEEEEEcC
Confidence            6899999999999999998 578999999999876432 111        11     12345789999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ...+++.++.  ++.+..+++|.++||+++..+.+.+.+.+.+++..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            7667777662  5667789999999999999999999999998876443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.23  E-value=8.8e-12  Score=116.50  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=90.1

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .++|||||+|.||+.+|+.| ...|.+|.+||+++..... +.        ..     +.....+++++++ ||+|++|+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~-~~--------~~-----g~~~~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRM-TEWPGGVTVYDIRIEAMTP-LA--------EA-----GATLADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHH-TTSTTCEEEECSSTTTSHH-HH--------HT-----TCEECSSHHHHTT-SSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HH--------HC-----CCEEcCCHHHHHh-CCEEEEEC
Confidence            36899999999999999998 5789999999998764221 11        11     1233568999999 99999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      |...+++.++ ++.+..+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        79 p~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  125 (296)
T 3qha_A           79 LDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIH  125 (296)
T ss_dssp             SSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE
T ss_pred             CChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE
Confidence            9777777776 6778889999999999999999999999999876443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.19  E-value=1e-11  Score=115.30  Aligned_cols=112  Identities=15%  Similarity=0.072  Sum_probs=89.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||..+|+.| ...|.+|++|||++.+... +.+        .     +.....++++++++||+|++|+|
T Consensus         2 ~~I~iiG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~-~~~--------~-----g~~~~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANL-VRAGFDVTVWNRNPAKCAP-LVA--------L-----GARQASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHHTCCEEEECSSGGGGHH-HHH--------H-----TCEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH-HHH--------C-----CCeecCCHHHHHHcCCEEEEEcC
Confidence            4799999999999999998 4678999999999765321 111        0     12335689999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ..++++.++.  ++.+..+++|.++||++++.+...+.+.+.+.+..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           67 DPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            7667777662  4567789999999999999998889999998875443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.19  E-value=1.3e-11  Score=115.55  Aligned_cols=112  Identities=19%  Similarity=0.155  Sum_probs=88.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc-cCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~sDiV~l~  243 (342)
                      .++|||||+|.||..+|+.| ...|.+|++|||++.... ...        ..+     ... ..+++++++.||+|++|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~-~~~--------~~g-----~~~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSC-LRAGLSTWGADLNPQACA-NLL--------AEG-----ACGAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHH-HHH--------HTT-----CSEEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHHH-HHH--------HcC-----CccccCCHHHHHhcCCEEEEE
Confidence            46899999999999999998 578999999999876432 111        111     122 46888999999999999


Q ss_pred             CCCCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          244 PVLDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       244 lplt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      +|.+..++.++.  ++.+..+++|.++||+++..+...+.+.+.+.+..+
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~  121 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNL  121 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence            997666777653  456678999999999999998888999999887544

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.19  E-value=1.6e-10  Score=114.33  Aligned_cols=154  Identities=18%  Similarity=0.254  Sum_probs=103.4

Q ss_pred             EcccccCccC-hhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 019328           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGI  170 (342)
                      -..+|+..+. +.......|+|.|+.+....+--+...+.--+           +..+.|.      ..+.++.||+++|
T Consensus       208 eTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~s-----------l~dgi~r------~tg~~L~GKtVvV  270 (488)
T 3ond_A          208 ETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHS-----------LPDGLMR------ATDVMIAGKVAVV  270 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHH-----------HHHHHHH------HHCCCCTTCEEEE
T ss_pred             cccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHH-----------HHHHHHH------HcCCcccCCEEEE
Confidence            4466776542 22333567999999775444322222221111           1111110      1235799999999


Q ss_pred             EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019328          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t  250 (342)
                      +|+|.||+.+|++| +++|++|+++|+++....+....         +      ....++++++..+|+|+.+.    .+
T Consensus       271 tGaGgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~Aa~~---------g------~dv~~lee~~~~aDvVi~at----G~  330 (488)
T 3ond_A          271 AGYGDVGKGCAAAL-KQAGARVIVTEIDPICALQATME---------G------LQVLTLEDVVSEADIFVTTT----GN  330 (488)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHT---------T------CEECCGGGTTTTCSEEEECS----SC
T ss_pred             ECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHh---------C------CccCCHHHHHHhcCEEEeCC----CC
Confidence            99999999999997 79999999999987543221110         1      12357889999999999763    46


Q ss_pred             ccccCHhHHccCCCCcEEEecCCCcc-CCHHHH
Q 019328          251 YHLINKERLATMKKEAILVNCSRGPV-IDEVAL  282 (342)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL  282 (342)
                      .++++.+.|+.||++++++|++++.. ++...+
T Consensus       331 ~~vl~~e~l~~mk~gaiVvNaG~~~~Ei~~~~l  363 (488)
T 3ond_A          331 KDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGL  363 (488)
T ss_dssp             SCSBCHHHHTTSCTTEEEEESSSTTTTBTHHHH
T ss_pred             hhhhhHHHHHhcCCCeEEEEcCCCCcccchHHH
Confidence            78899999999999999999999832 344433

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.16  E-value=6.7e-11  Score=111.69  Aligned_cols=124  Identities=16%  Similarity=0.054  Sum_probs=90.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChh--hHHHHHHhhhhhhhccCCCCCccccccC-CHHHHhhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~sDiV  240 (342)
                      .++|||||+|.||..+|+.| ...| .+|++||++++  ...++..+.+    ...+     .  .. ++++++++||+|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L-~~~G~~~V~~~dr~~~~~~~~~~~~~~~----~~~g-----~--~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGL-GGRNAARLAAYDLRFNDPAASGALRARA----AELG-----V--EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECGGGGCTTTHHHHHHHH----HHTT-----C--EEESSGGGGGGCSEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHcCCCeEEEEeCCCccccchHHHHHHH----HHCC-----C--CCCCHHHHHhcCCEE
Confidence            47899999999999999998 5789 99999999862  0000111110    1111     1  35 788999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E  302 (342)
                      ++|+|.......+  .+.+..+++|.++||+++..+...+.+.+.+.+..+....--|+-++
T Consensus        92 i~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~  151 (317)
T 4ezb_A           92 LSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV  151 (317)
T ss_dssp             EECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS
T ss_pred             EEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc
Confidence            9999976655543  67778899999999999999999999999998765433222355433

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.15  E-value=3e-11  Score=109.81  Aligned_cols=109  Identities=10%  Similarity=0.142  Sum_probs=66.3

Q ss_pred             CCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhH-------------HHHHHhhhhhhhc
Q 019328          149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-------------LEKFVTAYGQFLK  215 (342)
Q Consensus       149 ~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~-------------~~~~~~~~~~~~~  215 (342)
                      .|..|.+......++.+++|||||+|.||+.+|+.| ...|.+|++|||++...             ...+...      
T Consensus         3 ~~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (245)
T 3dtt_A            3 SDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGAL-ADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE------   75 (245)
T ss_dssp             ----------------CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHTCC-------CCHHHHGGG------
T ss_pred             cccccccccccccccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh------
Confidence            344444444456789999999999999999999998 57899999999987641             1111100      


Q ss_pred             cCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhH-HccCCCCcEEEecCC
Q 019328          216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSR  273 (342)
Q Consensus       216 ~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~-l~~mk~gailIN~sR  273 (342)
                            .+.....++++++++||+|++++|..... ..+. +. ...+ +|.++|+++-
T Consensus        76 ------~~~~~~~~~~e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           76 ------HPHVHLAAFADVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             ------STTCEEEEHHHHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECCC
T ss_pred             ------cCceeccCHHHHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECCC
Confidence                  01123468899999999999999955433 2222 22 2233 7999999993

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.15  E-value=1.1e-10  Score=116.09  Aligned_cols=125  Identities=15%  Similarity=0.189  Sum_probs=95.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh---cCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sDiV~  241 (342)
                      .++|||||+|.||..+|+.| ...|.+|.+|||++.... .+.+        .+..........+++++++   .+|+|+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L-~~~G~~V~v~dr~~~~~~-~l~~--------~g~~g~~i~~~~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKVD-DFLA--------NEAKGTKVVGAQSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHHH-HHHH--------TTTTTSSCEECSSHHHHHHTBCSSCEEE
T ss_pred             CCEEEEEChhHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHHh--------cccCCCceeccCCHHHHHhhccCCCEEE
Confidence            35799999999999999998 577999999999986532 2111        1111111222468999887   499999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~  300 (342)
                      +++|..+.++.++ ++.+..|++|.++||++++...+...+.+.|.+..+.....-|.-
T Consensus        74 l~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           74 LLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             ECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             EecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            9999877788777 677788999999999999999999999999988766544444443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.13  E-value=1.8e-10  Score=111.85  Aligned_cols=233  Identities=16%  Similarity=0.183  Sum_probs=128.7

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHHHHhc-------C-CccEEEecCCcCccHHHHHHhhccCCceEEEcccccC
Q 019328           29 WINLLIEQDCRVEICTQK--KTILSVEDIIALIG-------D-KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYN   98 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~-~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d   98 (342)
                      ..+.|.+.|+++.+-...  ...++.++..+.=+       + .+|+|+.- ..+ +++-++.++. |-.++...--.-|
T Consensus        47 ~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkV-k~p-~~~e~~~l~~-g~~l~~~lh~~~~  123 (405)
T 4dio_A           47 SVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKV-RRP-SAQEISGYRS-GAVVIAIMDPYGN  123 (405)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEE-ECC-CTTTGGGSCT-TCEEEEECCCTTC
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEe-CCC-ChhHHhhcCC-CcEEEEEeccccC
Confidence            456777789988764432  23466666654211       0 25665531 112 2233344543 2133332222223


Q ss_pred             ccChhHHHhCCceEEc---CCCCC-c------hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc-cccCCCE
Q 019328           99 NVDVNAANKYGIAVGN---TPGVL-T------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQT  167 (342)
Q Consensus        99 ~id~~~a~~~gI~v~n---~p~~~-~------~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g-~~l~gkt  167 (342)
                      .=-++++.++||...-   .|... +      .++||.+=.      +-.......+  +.   ..+....+ ..+.+.+
T Consensus       124 ~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy------~Av~~aa~~l--~~---~~~~l~t~~g~v~~~k  192 (405)
T 4dio_A          124 EEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGY------QAVIDAAYEY--DR---ALPMMMTAAGTVPAAK  192 (405)
T ss_dssp             HHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHH------HHHHHHHHHC--SS---CSSCEEETTEEECCCE
T ss_pred             HHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHH------HHHHHHHHHh--Hh---hhchhhccCCCcCCCE
Confidence            3334677888988743   34221 1      123333221      1111111111  11   01111111 2578999


Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh-hcc------CCCCCcccc----------ccCCH
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKA------NGEQPVTWK----------RASSM  230 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~----------~~~~l  230 (342)
                      |+|+|+|.||..+|+.+ +++|++|++||+++.....  ...++.. ...      .+....++.          ...++
T Consensus       193 V~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l~~--~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l  269 (405)
T 4dio_A          193 IFVMGAGVAGLQAIATA-RRLGAVVSATDVRPAAKEQ--VASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV  269 (405)
T ss_dssp             EEEECCSHHHHHHHHHH-HHTTCEEEEECSSTTHHHH--HHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred             EEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHHHHH--HHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence            99999999999999996 7999999999999764211  1112210 000      000000000          02368


Q ss_pred             HHHhhcCCEEEEcC--CCCcccccccCHhHHccCCCCcEEEecC--CCccCCH
Q 019328          231 DEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (342)
Q Consensus       231 ~ell~~sDiV~l~l--plt~~t~~li~~~~l~~mk~gailIN~s--RG~~vd~  279 (342)
                      ++++++||+|+.++  |.. .+.++++++.++.||||+++||+|  +|+.++.
T Consensus       270 ~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~  321 (405)
T 4dio_A          270 AEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG  321 (405)
T ss_dssp             HHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence            89999999999874  533 467899999999999999999998  7776644

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.13  E-value=1.3e-10  Score=108.73  Aligned_cols=120  Identities=13%  Similarity=0.157  Sum_probs=85.9

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++||||| +|.||+.+|+.| ...|.+|++||+++.                           .++++++++||+|++
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l-~~~G~~V~~~~~~~~---------------------------~~~~~~~~~aDvVil   71 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDW---------------------------AVAESILANADVVIV   71 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCG---------------------------GGHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HhCCCeEEEEECCcc---------------------------cCHHHHhcCCCEEEE
Confidence            357899999 999999999998 688999999998643                           146678899999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CCCCccCCCceEEcCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPH  320 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvi~TPH  320 (342)
                      |+|.. .+..++ ++....++++++++++++......+++.+.+   .     .++....|.  +..+++.-.++++|||
T Consensus        72 avp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~-----~~~v~~hP~~g~~~~~~~g~~~~l~~~  141 (298)
T 2pv7_A           72 SVPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH---T-----GAVLGLHPMFGADIASMAKQVVVRCDG  141 (298)
T ss_dssp             CSCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---S-----SEEEEEEECSCTTCSCCTTCEEEEEEE
T ss_pred             eCCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---C-----CCEEeeCCCCCCCchhhcCCeEEEecC
Confidence            99954 366655 3455679999999999876643344444432   1     133333443  2234666668999997


Q ss_pred             C
Q 019328          321 I  321 (342)
Q Consensus       321 i  321 (342)
                      -
T Consensus       142 ~  142 (298)
T 2pv7_A          142 R  142 (298)
T ss_dssp             E
T ss_pred             C
Confidence            5

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.12  E-value=1.5e-10  Score=107.13  Aligned_cols=184  Identities=15%  Similarity=0.159  Sum_probs=114.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC----CccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHH
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD----KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~  106 (342)
                      ..+++.|.+..+...+   .+++++.+.+..    +.+++.+..  +..++++..++.+  .-.++...++|.++.    
T Consensus        33 ~~~~~~g~~~~y~~~~---~~~~~l~~~i~~l~~~~~~G~nvti--P~k~~i~~~ld~l--~~~A~~~gavnti~~----  101 (275)
T 2hk9_A           33 ALIRYAGLNAVYLAFE---INPEELKKAFEGFKALKVKGINVTV--PFKEEIIPLLDYV--EDTAKEIGAVNTVKF----  101 (275)
T ss_dssp             HHHHHHTCSEEEEEEE---CCGGGHHHHHHHHHHHTCCEEEECT--TSTTTTGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHcCCCcEEEEEE---CCHHHHHHHHHHHHhCCCCEEEECc--cCHHHHHHHHHHh--hHHHHHhCCcceEEe----
Confidence            4556667666544332   234555443321    366777653  4556666666554  445555566776653    


Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHh
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~  186 (342)
                      +.|-    ..|+|++..     +++.++.|          .            +.++.|++++|||.|.+|+.+|+.| .
T Consensus       102 ~~g~----~~g~nTd~~-----G~~~~l~~----------~------------~~~~~~~~v~iiGaG~~g~aia~~L-~  149 (275)
T 2hk9_A          102 ENGK----AYGYNTDWI-----GFLKSLKS----------L------------IPEVKEKSILVLGAGGASRAVIYAL-V  149 (275)
T ss_dssp             ETTE----EEEECCHHH-----HHHHHHHH----------H------------CTTGGGSEEEEECCSHHHHHHHHHH-H
T ss_pred             eCCE----EEeecCCHH-----HHHHHHHH----------h------------CCCcCCCEEEEECchHHHHHHHHHH-H
Confidence            2342    234455332     44444332          1            1357889999999999999999997 5


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCc--ccccccCHhHHccCCC
Q 019328          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK--TTYHLINKERLATMKK  264 (342)
Q Consensus       187 a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~--~t~~li~~~~l~~mk~  264 (342)
                      ..|++|.+|||+.++. +.+.+.+            +.....+++++++++|+|++++|...  ++...++   ++.+++
T Consensus       150 ~~g~~V~v~~r~~~~~-~~l~~~~------------g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~  213 (275)
T 2hk9_A          150 KEGAKVFLWNRTKEKA-IKLAQKF------------PLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKK  213 (275)
T ss_dssp             HHTCEEEEECSSHHHH-HHHTTTS------------CEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCT
T ss_pred             HcCCEEEEEECCHHHH-HHHHHHc------------CCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCC
Confidence            7788999999987542 2111111            11223378888999999999999764  2223443   456899


Q ss_pred             CcEEEecCC
Q 019328          265 EAILVNCSR  273 (342)
Q Consensus       265 gailIN~sR  273 (342)
                      |.++++++.
T Consensus       214 g~~viDv~~  222 (275)
T 2hk9_A          214 DHVVVDIIY  222 (275)
T ss_dssp             TSEEEESSS
T ss_pred             CCEEEEcCC
Confidence            999999988

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.08  E-value=4.4e-10  Score=104.16  Aligned_cols=143  Identities=20%  Similarity=0.147  Sum_probs=95.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -++|||||+|.||+.+|+.|++ +.|.+|++||+++..... .. ..       +..   .....++++++++||+|++|
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~-~~-~~-------g~~---~~~~~~~~~~~~~aDvVila   73 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDI-AL-ER-------GIV---DEATADFKVFAALADVIILA   73 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHH-HH-HT-------TSC---SEEESCTTTTGGGCSEEEEC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH-HH-Hc-------CCc---ccccCCHHHhhcCCCEEEEc
Confidence            3689999999999999998753 347899999998754221 11 11       110   01235777888999999999


Q ss_pred             CCCCcccccccCHhHHcc-CCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee---cCCC---CCCC-CCCccCCCce
Q 019328          244 PVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFED---EPYM-KPGLSEMKNA  315 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~-mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD---V~~~---EP~~-~~~L~~~~nv  315 (342)
                      +|... .+.++ .+.... ++++.++++++++.....+.+.+.+.+..+.  .++   ++-.   .|.. ..+++.-+++
T Consensus        74 vp~~~-~~~v~-~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~  149 (290)
T 3b1f_A           74 VPIKK-TIDFI-KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYY  149 (290)
T ss_dssp             SCHHH-HHHHH-HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEE
T ss_pred             CCHHH-HHHHH-HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeE
Confidence            99433 34444 345566 8999999999988776668888888752221  122   2211   2322 2367787889


Q ss_pred             EEcCCCCC
Q 019328          316 IVVPHIAS  323 (342)
Q Consensus       316 i~TPHia~  323 (342)
                      +++||.++
T Consensus       150 ~~~~~~~~  157 (290)
T 3b1f_A          150 IFSPSCLT  157 (290)
T ss_dssp             EEEECTTC
T ss_pred             EEecCCCC
Confidence            99999765

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.08  E-value=2.6e-11  Score=115.59  Aligned_cols=137  Identities=20%  Similarity=0.186  Sum_probs=91.8

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..+.+++|||||+|.||+.+|+.| +..|++|++|+++.....+. ...       .+     .... ++++++++||+|
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L-~~~G~~V~~~~~~~~~~~~~-a~~-------~G-----~~~~-~~~e~~~~aDvV   76 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK-AEA-------HG-----LKVA-DVKTAVAAADVV   76 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH-HHH-------TT-----CEEE-CHHHHHHTCSEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHH-HHCcCEEEEEECChHHHHHH-HHH-------CC-----CEEc-cHHHHHhcCCEE
Confidence            468899999999999999999997 57899999999986542211 111       11     1122 788999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-C---CccC---CC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P---GLSE---MK  313 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~---~L~~---~~  313 (342)
                      ++|+|... ...++.++....|++|+++++++ |  +..  ..+.+.    ...++||+...|... .   .++.   -.
T Consensus        77 ilavp~~~-~~~v~~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           77 MILTPDEF-QGRLYKEEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             EECSCHHH-HHHHHHHHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             EEeCCcHH-HHHHHHHHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            99999543 35555445667799999999874 2  222  111111    133456776667422 2   2444   56


Q ss_pred             ceEEcCCCC
Q 019328          314 NAIVVPHIA  322 (342)
Q Consensus       314 nvi~TPHia  322 (342)
                      ++++|||-.
T Consensus       147 ~~ii~~~~~  155 (338)
T 1np3_A          147 PDLIAIYQD  155 (338)
T ss_dssp             CEEEEEEEC
T ss_pred             eEEEEecCC
Confidence            788999954

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.03  E-value=1.8e-10  Score=109.93  Aligned_cols=138  Identities=13%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc----CCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----ADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----sDiV~  241 (342)
                      ++|||||+|.||+++|+.| +..|.+|++||+++......  ...       +     .....++++++++    ||+|+
T Consensus         9 ~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~~a--~~~-------G-----~~~~~~~~e~~~~a~~~aDlVi   73 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDL-HAANHSVFGYNRSRSGAKSA--VDE-------G-----FDVSADLEATLQRAAAEDALIV   73 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHHHHH--HHT-------T-----CCEESCHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HHc-------C-----CeeeCCHHHHHHhcccCCCEEE
Confidence            5799999999999999998 67899999999987643221  111       1     1224678888765    79999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCC-CCC---CCCccCCCceEE
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PYM---KPGLSEMKNAIV  317 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E-P~~---~~~L~~~~nvi~  317 (342)
                      +|+|. ..+..++ + .+..++++++++|++....--.+++.+.+...+..+. -=++-.| ..+   ...|+.-.++++
T Consensus        74 lavP~-~~~~~vl-~-~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~-HPmaG~e~sG~~aa~~~Lf~g~~~il  149 (341)
T 3ktd_A           74 LAVPM-TAIDSLL-D-AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGS-HPMAGTANSGWSASMDGLFKRAVWVV  149 (341)
T ss_dssp             ECSCH-HHHHHHH-H-HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECE-EECCSCC-CCGGGCCSSTTTTCEEEE
T ss_pred             EeCCH-HHHHHHH-H-HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecC-CccccccccchhhhhhHHhcCCeEEE
Confidence            99994 4566665 2 3444589999999987653222333333321111110 1122222 111   235888888999


Q ss_pred             cCCCC
Q 019328          318 VPHIA  322 (342)
Q Consensus       318 TPHia  322 (342)
                      ||+-.
T Consensus       150 tp~~~  154 (341)
T 3ktd_A          150 TFDQL  154 (341)
T ss_dssp             CCGGG
T ss_pred             EeCCC
Confidence            99854

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.02  E-value=3.9e-10  Score=104.76  Aligned_cols=110  Identities=17%  Similarity=0.184  Sum_probs=85.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|||||+|.||+.+|+.| ...|.+|.+||+++.... .+.        ..     +.....+++++++.+|+|++|+|
T Consensus         6 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~-~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAIA-DVI--------AA-----GAETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH-HHH--------HT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-HHH--------HC-----CCeecCCHHHHHhCCCEEEEECC
Confidence            4899999999999999998 567999999999875421 111        11     12234688999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      .+..++.++.  ++....+++|.++|+++.|...+.+.|.+.+.+..
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g  117 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG  117 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            7666676663  34567789999999999998877888999987643

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.01  E-value=4.2e-10  Score=104.70  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++.... .+.        ..     +.....+++++++.+|+|++|+|
T Consensus         5 ~~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~-~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINL-LKEGVTVYAFDLMEANVA-AVV--------AQ-----GAQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHH-HHTTCEEEEECSSHHHHH-HHH--------TT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHH--------HC-----CCeecCCHHHHHhCCCEEEEECC
Confidence            5899999999999999998 467999999999875421 111        11     12234688999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ....++.++.  ++....+++|.++|++++|...+.+.|.+.+.+.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~  115 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK  115 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7766777764  3566778999999999999877788898888764

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.00  E-value=8.1e-10  Score=110.04  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=90.0

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CC
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---AD  238 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD  238 (342)
                      ....++|||||+|.||+.+|+.| ...|.+|.+|||+++.. +.+.+..       .  ..+.....+++++++.   +|
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~L-a~~G~~V~v~~r~~~~~-~~l~~~~-------~--~~gi~~~~s~~e~v~~l~~aD   80 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNI-ESRGYTVSIFNRSREKT-EEVIAEN-------P--GKKLVPYYTVKEFVESLETPR   80 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHH-HTTTCCEEEECSSHHHH-HHHHHHS-------T--TSCEEECSSHHHHHHTBCSSC
T ss_pred             ccCCCeEEEEccHHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHHhhC-------C--CCCeEEeCCHHHHHhCCCCCC
Confidence            45667899999999999999998 46799999999987643 2221110       0  0122334689999887   99


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      +|++++|.+..++.++ ++....+++|.++||++.|...+...+.+.+.+..+
T Consensus        81 vVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~  132 (480)
T 2zyd_A           81 RILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF  132 (480)
T ss_dssp             EEEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence            9999999877788877 466778999999999999998888889998987544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.98  E-value=5.5e-10  Score=103.61  Aligned_cols=108  Identities=22%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|++|||++.... .+.        ..     +.....+++++++.+|+|++|+|
T Consensus         1 m~i~iiG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~~-~~~--------~~-----g~~~~~~~~~~~~~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNL-MKHGYPLIIYDVFPDACK-EFQ--------DA-----GEQVVSSPADVAEKADRIITMLP   65 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHTTCCEEEECSSTHHHH-HHH--------TT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CeEEEEeccHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHH--------Hc-----CCeecCCHHHHHhcCCEEEEeCC
Confidence            3699999999999999998 577999999999875421 111        11     12234688999999999999999


Q ss_pred             CCcccccccCH--hHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       246 lt~~t~~li~~--~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      ....++.++..  ..+..+++|.++|+++...+-+.+.+.+.+.+
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            77777776643  25567899999999888777666777777765

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.98  E-value=1.1e-09  Score=102.24  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=94.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .-+.|+|||||+|.||..+|+.+ . .|.+|++||+++...... .+.    +....  ..+.....++++ +++||+|+
T Consensus         9 ~~~~~~V~vIG~G~MG~~iA~~l-a-aG~~V~v~d~~~~~~~~~-~~~----l~~~~--~~~i~~~~~~~~-~~~aDlVi   78 (293)
T 1zej_A            9 HHHHMKVFVIGAGLMGRGIAIAI-A-SKHEVVLQDVSEKALEAA-REQ----IPEEL--LSKIEFTTTLEK-VKDCDIVM   78 (293)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHHHHH-HHH----SCGGG--GGGEEEESSCTT-GGGCSEEE
T ss_pred             ccCCCeEEEEeeCHHHHHHHHHH-H-cCCEEEEEECCHHHHHHH-HHH----HHHHH--hCCeEEeCCHHH-HcCCCEEE
Confidence            35679999999999999999998 5 799999999997653221 111    00000  001222356766 79999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPH  320 (342)
                      .++|.+.+.+..+-.+ ++.+ |+++++ |+|.-+   ...+.+++. ......++..|.  |.     ...+-+.++|+
T Consensus        79 eavpe~~~vk~~l~~~-l~~~-~~~IlasntSti~---~~~~a~~~~-~~~r~~G~Hf~~--Pv-----~~~~lveiv~g  145 (293)
T 1zej_A           79 EAVFEDLNTKVEVLRE-VERL-TNAPLCSNTSVIS---VDDIAERLD-SPSRFLGVHWMN--PP-----HVMPLVEIVIS  145 (293)
T ss_dssp             ECCCSCHHHHHHHHHH-HHTT-CCSCEEECCSSSC---HHHHHTTSS-CGGGEEEEEECS--ST-----TTCCEEEEEEC
T ss_pred             EcCcCCHHHHHHHHHH-HhcC-CCCEEEEECCCcC---HHHHHHHhh-cccceEeEEecC--cc-----ccCCEEEEECC
Confidence            9999888877766544 5667 999984 887754   345555443 234566677666  43     23455667765


Q ss_pred             CCCCcHHHHHHHHH
Q 019328          321 IASASKWTREGMAT  334 (342)
Q Consensus       321 ia~~t~~~~~~~~~  334 (342)
                      -. .+.++.+++..
T Consensus       146 ~~-t~~~~~~~~~~  158 (293)
T 1zej_A          146 RF-TDSKTVAFVEG  158 (293)
T ss_dssp             TT-CCHHHHHHHHH
T ss_pred             CC-CCHHHHHHHHH
Confidence            32 24455544433

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.96  E-value=4.5e-09  Score=103.76  Aligned_cols=194  Identities=16%  Similarity=0.101  Sum_probs=115.6

Q ss_pred             CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcc-----cccccCCCEEEEEccChHHHHHHHHHHhcCC
Q 019328          115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFK  189 (342)
Q Consensus       115 ~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~-----~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g  189 (342)
                      ..|-|-..|.|.+.+++|...|.         .++|.   ....     ....-.=++|||||.|.||..+|..++ ..|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~---------~~~w~---~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la-~aG   77 (460)
T 3k6j_A           11 STGENLYFQGSEVRSYLMEAHSL---------AGQWS---LPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFG-LAG   77 (460)
T ss_dssp             TTSGGGGGCBCHHHHHHHHTTCC---------TTSCB---CSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHH-HTT
T ss_pred             ccccchhhhhHHHHHHHHhHHHh---------hcccc---CCCCccccccCCcccCCEEEEECCCHHHHHHHHHHH-HCC
Confidence            34556777788888888773322         23352   1100     001122378999999999999999985 679


Q ss_pred             cEEEEEcCChhhHHHHHHhhhhhhhccCCCCC--------ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          190 MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       190 ~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      .+|++||+++++........+.... ..+...        .......+++ .+++||+|+.++|.+.+.+.-+-++..+.
T Consensus        78 ~~V~l~D~~~e~a~~~i~~~l~~~~-~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~  155 (460)
T 3k6j_A           78 IETFLVVRNEQRCKQELEVMYAREK-SFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENI  155 (460)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHHHH-HTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEECcHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence            9999999997632111000000001 111100        0011235675 68999999999998777776666777788


Q ss_pred             CCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCCcHHHHHHHHHH
Q 019328          262 MKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATL  335 (342)
Q Consensus       262 mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~t~~~~~~~~~~  335 (342)
                      ++++++|+ |+|.   +....+.+++.. .-...++..|.  |..     .++-|.++|+- ..+.++.+.+...
T Consensus       156 ~~~~aIlasnTSs---l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvEIv~g~-~Ts~e~~~~~~~l  218 (460)
T 3k6j_A          156 CKSTCIFGTNTSS---LDLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVEIIYGS-HTSSQAIATAFQA  218 (460)
T ss_dssp             SCTTCEEEECCSS---SCHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEEEECCS-SCCHHHHHHHHHH
T ss_pred             CCCCCEEEecCCC---hhHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEEEEeCC-CCCHHHHHHHHHH
Confidence            99999996 5554   444666666543 34567777777  432     23345566653 2244555544443

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.95  E-value=2.5e-09  Score=102.74  Aligned_cols=108  Identities=17%  Similarity=0.234  Sum_probs=82.9

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sDiV  240 (342)
                      +|.||||+|+|+|+||+.+|+.| ..+|++|+++|+++.. ..++.+.++            . ...+.++++. .||++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L-~~~GakVvv~D~~~~~-l~~~a~~~g------------a-~~v~~~~ll~~~~DIv  234 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEEG------------A-DAVAPNAIYGVTCDIF  234 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHHC------------C-EECCGGGTTTCCCSEE
T ss_pred             CCCcCEEEEECchHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHcC------------C-EEEChHHHhccCCcEe
Confidence            79999999999999999999997 7999999999998653 222222221            1 1235566666 89999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      +.|.     +.++|+.+.++.|+ ..++++.+++++.+++ ..+.|+++.+
T Consensus       235 ip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          235 APCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             EECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             eccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            9873     67789988899995 5689999999998866 5566776655

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.95  E-value=5e-10  Score=103.76  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=83.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|.+|| ++... +.+.        ..     +.....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~-~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINL-ARAGHQLHVTT-IGPVA-DELL--------SL-----GAVNVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHH-HHTTCEEEECC-SSCCC-HHHH--------TT-----TCBCCSSHHHHHHTCSEEEECCS
T ss_pred             CEEEEEccCHHHHHHHHHH-HhCCCEEEEEc-CHHHH-HHHH--------Hc-----CCcccCCHHHHHhcCCEEEEECC
Confidence            4899999999999999998 46799999999 65432 1111        11     12234688999999999999999


Q ss_pred             CCcccccccCH--hHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 lt~~t~~li~~--~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ...+++.++..  +....+++|.++|++++|...+.+.|.+.+.+.
T Consensus        68 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  113 (295)
T 1yb4_A           68 DTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM  113 (295)
T ss_dssp             SHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            76666666542  455678999999999999888888999998863

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.93  E-value=6e-09  Score=95.84  Aligned_cols=149  Identities=13%  Similarity=0.057  Sum_probs=94.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|++||+++..... .. .+       +..   .....+++++ +++|+|++++|
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~~-~~-~~-------g~~---~~~~~~~~~~-~~~D~vi~av~   66 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEK-AV-ER-------QLV---DEAGQDLSLL-QTAKIIFLCTP   66 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHH-HH-HT-------TSC---SEEESCGGGG-TTCSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH-HH-hC-------CCC---ccccCCHHHh-CCCCEEEEECC
Confidence            3799999999999999997 5778999999998754321 11 11       111   0123578888 99999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCC---CCC-CCCccCCCceEEcCCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PYM-KPGLSEMKNAIVVPHI  321 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E---P~~-~~~L~~~~nvi~TPHi  321 (342)
                      . ..+..++ ++....+++++++|+++.......+.+.+.+.  ++.+. .-++-.+   |.. ...++.-+.++++|+-
T Consensus        67 ~-~~~~~~~-~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~  141 (279)
T 2f1k_A           67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTE  141 (279)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECT
T ss_pred             H-HHHHHHH-HHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCC
Confidence            3 3445544 34556789999999997766555555555443  22222 1233111   211 1246666778999975


Q ss_pred             CCCcHHHHHHHHH
Q 019328          322 ASASKWTREGMAT  334 (342)
Q Consensus       322 a~~t~~~~~~~~~  334 (342)
                      ++ +.+..+.+..
T Consensus       142 ~~-~~~~~~~v~~  153 (279)
T 2f1k_A          142 YT-DPEQLACLRS  153 (279)
T ss_dssp             TC-CHHHHHHHHH
T ss_pred             CC-CHHHHHHHHH
Confidence            43 4455444433

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.93  E-value=1.4e-09  Score=102.06  Aligned_cols=110  Identities=14%  Similarity=0.134  Sum_probs=84.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++.... .+.+        .     +.....+++++++++|+|++|+|
T Consensus        31 ~~I~iIG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~~-~~~~--------~-----g~~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNL-LKMGHTVTVWNRTAEKCD-LFIQ--------E-----GARLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSSGGGGH-HHHH--------T-----TCEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-HHHH--------c-----CCEEcCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999998 467899999999876421 1110        1     11234578899999999999999


Q ss_pred             CCcccccccCH--hHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       246 lt~~t~~li~~--~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      ....++.++..  ..+..++++.++|+++++.....+.+.+.+....
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~  142 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRG  142 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            76666665543  2456789999999999988777788888886543

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.93  E-value=2.2e-09  Score=107.30  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=89.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~  241 (342)
                      .++|||||+|.||+.+|+.|+ ..|.+|.+|||++.+.. .+.+.      ...  ..+.....+++++++.   ||+|+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~-~l~~~------~~~--~~gi~~~~s~~e~v~~l~~aDvVi   79 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAA-DHGFTVCAYNRTQSKVD-HFLAN------EAK--GKSIIGATSIEDFISKLKRPRKVM   79 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSSHHHH-HHHHT------TTT--TSSEECCSSHHHHHHTSCSSCEEE
T ss_pred             CCCEEEEeeHHHHHHHHHHHH-HCCCEEEEEeCCHHHHH-HHHcc------ccc--CCCeEEeCCHHHHHhcCCCCCEEE
Confidence            458999999999999999984 67899999999976532 22110      000  0122335689998887   99999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      +++|....++.++ ++....+++|.++|+++.+...+...+.+.+.+..+
T Consensus        80 l~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~  128 (497)
T 2p4q_A           80 LLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI  128 (497)
T ss_dssp             ECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             EEcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCC
Confidence            9999777788877 566778999999999999998888889998887443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.93  E-value=9.1e-10  Score=101.58  Aligned_cols=106  Identities=18%  Similarity=0.215  Sum_probs=81.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+|+.| .. |.+|.+||+++.... ...+.        +     ..... ++++++.+|+|++|+|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l-~~-g~~V~~~~~~~~~~~-~~~~~--------g-----~~~~~-~~~~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHL-AR-RFPTLVWNRTFEKAL-RHQEE--------F-----GSEAV-PLERVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HT-TSCEEEECSSTHHHH-HHHHH--------H-----CCEEC-CGGGGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-hC-CCeEEEEeCCHHHHH-HHHHC--------C-----CcccC-HHHHHhCCCEEEEeCC
Confidence            4799999999999999998 46 999999999875422 11110        1     11122 6678889999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ....++.++ ++....+++|.++|+++.+...+.+.|.+.+.+.
T Consensus        65 ~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  107 (289)
T 2cvz_A           65 TTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREK  107 (289)
T ss_dssp             SHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            665566655 4556778999999999999888888999998874

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.90  E-value=5e-09  Score=103.94  Aligned_cols=147  Identities=14%  Similarity=0.198  Sum_probs=94.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhh--------hhhhccCCCCCccccccCCHHHHhhc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a-~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      ++|||||+|.||..+|..|++. .|.+|++||++++... ....+.        ...+...  ...+.....++++.++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~-~l~~g~~~i~e~~l~~~~~~~--~~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRIN-AWNSPTLPIYEPGLKEVVESC--RGKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHH-HHTSSSCSSCCTTHHHHHHHH--BTTTEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHH-HHhCCCCCcCCCCHHHHHHHh--hcCCEEEECCHHHHHhc
Confidence            5899999999999999998532 2899999999876421 110000        0000000  00012234678889999


Q ss_pred             CCEEEEcCCCCccccccc-------------CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEee---cCC
Q 019328          237 ADVISLHPVLDKTTYHLI-------------NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFE  300 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li-------------~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalD---V~~  300 (342)
                      ||+|++|+|...+..+.+             -++....|++|+++|++|+..+-..+.+.+.+.+....  .+|   ++.
T Consensus        83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~  160 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSN  160 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEEC
T ss_pred             CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeC
Confidence            999999999554433321             13355678999999999998888888899888875422  233   355


Q ss_pred             CCCCCC-C---CccCCCceEE
Q 019328          301 DEPYMK-P---GLSEMKNAIV  317 (342)
Q Consensus       301 ~EP~~~-~---~L~~~~nvi~  317 (342)
                      +|+..+ .   .+...+++++
T Consensus       161 Pe~~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          161 PEFLAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEE
T ss_pred             HHHhhcccchhhccCCCEEEE
Confidence            665433 2   3556677764

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.41  E-value=1.8e-10  Score=101.79  Aligned_cols=94  Identities=18%  Similarity=0.201  Sum_probs=72.3

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      +.+++|||||+|.||+.+|+.| ...|++|++|||+...  +.+.        .     .+.. ..+++++++++|+|++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~--~~~~--------~-----~g~~-~~~~~~~~~~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKM-LQCGYSVVFGSRNPQV--SSLL--------P-----RGAE-VLCYSEAASRSDVIVL   79 (201)
Confidence            7788999999999999999997 5789999999987641  1110        0     1111 2377888999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      ++|.. +++.++   .+..+++++++||+++|-..
T Consensus        80 av~~~-~~~~v~---~l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           80 AVHRE-HYDFLA---ELADSLKGRVLIDVSNNQKM  110 (201)
Confidence            99964 577766   25567789999999999864

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.88  E-value=3.7e-09  Score=105.11  Aligned_cols=115  Identities=16%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l  242 (342)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+|||+++.. +.+.+.+.         ..+.....+++++++.   +|+|++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~-~~l~~~~~---------~~gi~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVE-SRGYTVAIYNRTTSKT-EEVFKEHQ---------DKNLVFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHTT---------TSCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHHH-hCCCEEEEEcCCHHHH-HHHHHhCc---------CCCeEEeCCHHHHHhhccCCCEEEE
Confidence            57999999999999999984 6789999999987642 22221110         0112335689998876   999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ++|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        75 avp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           75 MVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             CCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             EccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            999777777776 4566789999999999999888888898888765443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.84  E-value=4.5e-09  Score=104.73  Aligned_cols=116  Identities=13%  Similarity=0.204  Sum_probs=87.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh---cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sDiV~l  242 (342)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+|||++... +.+...      . . .+.+.....+++++++   .+|+|++
T Consensus         3 m~IgvIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~------~-~-~g~gi~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKV-DDFLAN------E-A-KGTKVLGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHH-HHHHHT------T-T-TTSSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHhc------c-c-cCCCeEEeCCHHHHHhhccCCCEEEE
Confidence            47999999999999999984 6789999999987643 221110      0 0 0011223468888875   8999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ++|....++.++ .+....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        73 aVp~~~~v~~vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~  121 (482)
T 2pgd_A           73 LVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (482)
T ss_dssp             CSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             eCCChHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            999776777776 3566779999999999999888888888888775443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.83  E-value=1.7e-08  Score=83.75  Aligned_cols=93  Identities=13%  Similarity=0.250  Sum_probs=70.1

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      |++++|||.|.||+.+++.| ...|++|.++||++... +.+.+.++          .......+++++++++|+|+.++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l-~~~g~~v~v~~r~~~~~-~~~a~~~~----------~~~~~~~~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF-SYPQYKVTVAGRNIDHV-RAFAEKYE----------YEYVLINDIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC-CTTTCEEEEEESCHHHH-HHHHHHHT----------CEEEECSCHHHHHHTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHHhC----------CceEeecCHHHHhcCCCEEEEeC
Confidence            88999999999999999997 67899999999987643 22222221          11123468899999999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |.+   ..++..   +.+++|.+++|++...
T Consensus        89 ~~~---~~~~~~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           89 SSK---TPIVEE---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             CCS---SCSBCG---GGCCTTCEEEECCSSC
T ss_pred             CCC---CcEeeH---HHcCCCCEEEEccCCc
Confidence            965   334444   4568899999998754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.83  E-value=1.1e-08  Score=101.79  Aligned_cols=119  Identities=17%  Similarity=0.184  Sum_probs=87.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sDiV~l  242 (342)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+|||++... +.+.+.++..  .   .+.......+++++++.   +|+|++
T Consensus         2 MkIgVIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~~g~~--~---~~~~i~~~~~~~e~v~~l~~aDvVil   74 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIA-EKGFKVAVFNRTYSKS-EEFMKANASA--P---FAGNLKAFETMEAFAASLKKPRKALI   74 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHTTTS--T---TGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHHhcCCC--C---CCCCeEEECCHHHHHhcccCCCEEEE
Confidence            36999999999999999984 6789999999987542 2222211100  0   00112335688898874   999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ++|....++.++ ++....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        75 aVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             ecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence            999776777766 4566778999999999999888888899998875444

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.80  E-value=5.5e-09  Score=95.31  Aligned_cols=103  Identities=14%  Similarity=0.091  Sum_probs=76.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcC--ChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|||||+|.||+.+|+.| ...|.+|++||+  ++.. .+....        .+     ..  .++++++++||+|++|
T Consensus         1 M~I~iIG~G~mG~~la~~l-~~~g~~V~~~~~~~~~~~-~~~~~~--------~g-----~~--~~~~~~~~~aDvvi~~   63 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPST-IERART--------VG-----VT--ETSEEDVYSCPVVISA   63 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHH-HHHHHH--------HT-----CE--ECCHHHHHTSSEEEEC
T ss_pred             CeEEEEechHHHHHHHHHH-HHCCCeEEEeCCccCHHH-HHHHHH--------CC-----Cc--CCHHHHHhcCCEEEEE
Confidence            3799999999999999998 467899999988  3322 111110        01     11  4678889999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +|.....+.+  .+....+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        64 v~~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           64 VTPGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             SCGGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             CCCHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            9966555554  456677877  99999988877778888888653

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.79  E-value=4e-09  Score=103.88  Aligned_cols=102  Identities=20%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             cccCC-CEEEEEccChHHHHHHHHHHhcC------CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328          161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       161 ~~l~g-ktvGIiG~G~IG~~vA~~l~~a~------g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (342)
                      ..|.| |||||||+|.||+++|+.| +..      |++|++.++......+. ....       +.... .....+++++
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nL-r~s~~~~g~G~~ViVg~r~~sks~e~-A~e~-------G~~v~-d~ta~s~aEA  118 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKIGLRKGSKSFDE-ARAA-------GFTEE-SGTLGDIWET  118 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHH-HHHT-------TCCTT-TTCEEEHHHH
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHH-HhcccccCCCCEEEEEeCCchhhHHH-HHHC-------CCEEe-cCCCCCHHHH
Confidence            57999 9999999999999999998 455      99988665543211111 0011       11100 0012478999


Q ss_pred             hhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       234 l~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +++||+|++++|..... .++. +.+..||+|++ |-.+-|-
T Consensus       119 a~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf  157 (525)
T 3fr7_A          119 VSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGF  157 (525)
T ss_dssp             HHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCE-EEESSSH
T ss_pred             HhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCe-EEEeCCC
Confidence            99999999999976553 4554 68899999999 5667773

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.78  E-value=7.1e-09  Score=94.74  Aligned_cols=103  Identities=13%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +++.+++|||||+|.||+.+|+.++ ..|.+ |.+||+++... +...+.+            +.....+++++++++|+
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~~~~~~~-~~~~~~~------------g~~~~~~~~~~~~~~Dv   71 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALY-RKGFRIVQVYSRTEESA-RELAQKV------------EAEYTTDLAEVNPYAKL   71 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSHHHH-HHHHHHT------------TCEEESCGGGSCSCCSE
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHH-HCCCeEEEEEeCCHHHH-HHHHHHc------------CCceeCCHHHHhcCCCE
Confidence            4566789999999999999999974 56888 89999987642 2221111            11224578888899999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~  279 (342)
                      |++++|.. ..+.++ ++....+++++++|+++.|...+.
T Consensus        72 vi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           72 YIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             EEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             EEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchHH
Confidence            99999954 334444 345567889999999999877543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.70  E-value=5.5e-07  Score=86.31  Aligned_cols=225  Identities=16%  Similarity=0.181  Sum_probs=126.7

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHHHHhc---C------CccEEEecCCcCccHHHHHHhhccCCceEEEccccc
Q 019328           29 WINLLIEQDCRVEICTQKK--TILSVEDIIALIG---D------KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~------~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~   97 (342)
                      ..+.|.+.|+++.+-....  ..++.++..+.=.   +      ++|+|+. ...+...+. . +.+.|...+......+
T Consensus        22 ~v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~~ad~i~~-vksP~~~~~-~-~~~~g~~~~~y~~~~~   98 (361)
T 1pjc_A           22 SVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVK-VKEPLPAEY-D-LMQKDQLLFTYLHLAA   98 (361)
T ss_dssp             HHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHHTSSEEEC-SSCCCGGGG-G-GCCTTCEEEECCCGGG
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHhcCCeEEE-ECCCCHHHH-H-hhcCCCEEEEEecccc
Confidence            3567777888876533321  2455555542100   0      3787653 333333332 1 2222323444334444


Q ss_pred             CccChhHHHhCCceEEc---CCCCC-----chhHHHHHH--HHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 019328           98 NNVDVNAANKYGIAVGN---TPGVL-----TETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (342)
Q Consensus        98 d~id~~~a~~~gI~v~n---~p~~~-----~~~vAE~al--~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gkt  167 (342)
                      +.-.++++.++|+...|   .|.-.     -.++++.+-  +.+++.. ++..    ...|+  +..... . ..+.+++
T Consensus        99 ~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~-nt~~----~~~g~--G~~l~~-l-~~l~~~~  169 (361)
T 1pjc_A           99 ARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGAR-FLER----QQGGR--GVLLGG-V-PGVKPGK  169 (361)
T ss_dssp             CHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHH-HTSG----GGTSC--CCCTTC-B-TTBCCCE
T ss_pred             CHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHH-HHhh----ccCCC--ceeccC-C-CCCCCCE
Confidence            54446777888888765   34321     134554444  4444432 2211    11221  010000 1 2478899


Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt  247 (342)
                      |.|+|.|.+|+.+++.+ +++|++|+++|+++.+... ..+..+..      .........++.+.+..+|+|+.+++..
T Consensus       170 VlViGaGgvG~~aa~~a-~~~Ga~V~v~dr~~~r~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~DvVI~~~~~~  241 (361)
T 1pjc_A          170 VVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERLSY-LETLFGSR------VELLYSNSAEIETAVAEADLLIGAVLVP  241 (361)
T ss_dssp             EEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHH-HHHHHGGG------SEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             EEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHHHH-HHHhhCce------eEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence            99999999999999996 7999999999998764211 11111000      0000001125667788999999998753


Q ss_pred             c-ccccccCHhHHccCCCCcEEEecCC
Q 019328          248 K-TTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       248 ~-~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      . .+..++.++.++.||+|++++|++-
T Consensus       242 ~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          242 GRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             TSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            3 2456678889999999999999974

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.69  E-value=7.9e-08  Score=90.36  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=71.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+++|||||+|.||+.+++.+++.+|. +|.+|||++... +.+.+.++       .   ......++++++++||+|++
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~-~~l~~~~~-------~---~~~~~~~~~e~v~~aDiVi~  202 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENA-EKFADTVQ-------G---EVRVCSSVQEAVAGADVIIT  202 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHH-HHHHHHSS-------S---CCEECSSHHHHHTTCSEEEE
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHhh-------C---CeEEeCCHHHHHhcCCEEEE
Confidence            467999999999999999987555677 899999987642 22222211       0   01234689999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      |+|.   +..++..   +.+++|.++++++....
T Consensus       203 atp~---~~~v~~~---~~l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          203 VTLA---TEPILFG---EWVKPGAHINAVGASRP  230 (312)
T ss_dssp             CCCC---SSCCBCG---GGSCTTCEEEECCCCST
T ss_pred             EeCC---CCcccCH---HHcCCCcEEEeCCCCCC
Confidence            9984   3556654   57899999999987665

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.68  E-value=1.8e-07  Score=84.93  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=74.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||+.+++.| ...|.+|.+||+++... +.+.+.++            .....+++++++++|+|++++|
T Consensus         4 m~i~iiG~G~mG~~~a~~l-~~~g~~v~~~~~~~~~~-~~~~~~~g------------~~~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQLA------------LPYAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHHT------------CCBCSSHHHHHHTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHHcC------------CEeeCCHHHHHhcCCEEEEEeC
Confidence            4899999999999999997 57788999999987542 22221111            1224688999999999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                       ....     .+.+..+++|.++|+++.|--  .+.+.+.+..+
T Consensus        70 -~~~~-----~~v~~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           70 -PQLF-----ETVLKPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             -GGGH-----HHHHTTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             -cHhH-----HHHHHHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence             3333     345566778999999976643  45577777644

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.67  E-value=3.2e-08  Score=87.94  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=68.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+++|+|||+|.||+.+|+.| ...|.+|.++||+.+.. +..        ...   +.  .. .+++++++++|+|+++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l-~~~g~~V~~~~r~~~~~-~~~--------~~~---g~--~~-~~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRL-VGSGFKVVVGSRNPKRT-ARL--------FPS---AA--QV-TFQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSHHHH-HHH--------SBT---TS--EE-EEHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHc---CC--ce-ecHHHHHhCCCEEEEC
Confidence            457899999999999999998 57789999999986542 111        111   11  11 2788899999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      +|. .....++.   ++.+.+++++|++++|...+
T Consensus        91 v~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           91 VFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             SCG-GGSGGGGG---GHHHHTTCEEEECCCCCHHH
T ss_pred             CCh-HHHHHHHH---HHHhcCCCEEEEeCCCcccc
Confidence            994 44555553   33334799999999997543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.67  E-value=4.5e-08  Score=88.66  Aligned_cols=105  Identities=23%  Similarity=0.320  Sum_probs=73.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc----EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++|||||+|.||+.+|+.| ...|.    +|++|||+++.. +.+.+.+            +.....++++++++||+|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l-~~~g~~~~~~V~~~~r~~~~~-~~~~~~~------------g~~~~~~~~e~~~~aDvVi   68 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGM-INKNIVSSNQIICSDLNTANL-KNASEKY------------GLTTTTDNNEVAKNADILI   68 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTSSCGGGEEEECSCHHHH-HHHHHHH------------CCEECSCHHHHHHHCSEEE
T ss_pred             CeEEEECccHHHHHHHHHH-HhCCCCCCCeEEEEeCCHHHH-HHHHHHh------------CCEEeCChHHHHHhCCEEE
Confidence            5899999999999999998 46787    999999987642 2222111            1223468899999999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      +++|. ...+.++ ++....++++.++|.+.-|-  ..+.|.+.+..
T Consensus        69 lav~~-~~~~~v~-~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           69 LSIKP-DLYASII-NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ECSCT-TTHHHHC----CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             EEeCH-HHHHHHH-HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            99972 3344444 44556688999999776553  35567666654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.67  E-value=2e-07  Score=86.80  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhh---hhccCCCCC-------------ccccccCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ---FLKANGEQP-------------VTWKRASS  229 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~  229 (342)
                      ++|||||.|.||..+|..++ ..|.+|++||+++...... ......   .+...+...             .......+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~~-~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKS-KKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHH-HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHH-HHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence            68999999999999999985 5699999999987543211 000000   000011000             01122467


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCc
Q 019328          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL  309 (342)
Q Consensus       230 l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L  309 (342)
                      +++.++.||+|++++|...+.+.-+-++....++++++++..+.|  +....+.+.+... -.-.+...+.  |.     
T Consensus        94 ~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~~-~~~~g~h~~~--P~-----  163 (302)
T 1f0y_A           94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQ-DRFAGLHFFN--PV-----  163 (302)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEEECS--ST-----
T ss_pred             HHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCCc-ccEEEEecCC--Cc-----
Confidence            888899999999999976554444445555678899999854444  3345565555421 2234555554  32     


Q ss_pred             cCCCceEEcCCCCCCcHHHHHHHHH
Q 019328          310 SEMKNAIVVPHIASASKWTREGMAT  334 (342)
Q Consensus       310 ~~~~nvi~TPHia~~t~~~~~~~~~  334 (342)
                      ...+.+.+.++-. .+.+..+.+..
T Consensus       164 ~~~~~~~i~~g~~-~~~e~~~~~~~  187 (302)
T 1f0y_A          164 PVMKLVEVIKTPM-TSQKTFESLVD  187 (302)
T ss_dssp             TTCCEEEEECCTT-CCHHHHHHHHH
T ss_pred             ccCceEEEeCCCC-CCHHHHHHHHH
Confidence            1234455555432 24455544443

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.66  E-value=2.1e-08  Score=88.84  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=60.8

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .++.+++|+|||+|.||+.+|+.| ...|.+|++|||+++                                .+++||+|
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l-~~~g~~V~~~~~~~~--------------------------------~~~~aD~v   61 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNF-EIAGHEVTYYGSKDQ--------------------------------ATTLGEIV   61 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHH-HHTTCEEEEECTTCC--------------------------------CSSCCSEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHH--------------------------------HhccCCEE
Confidence            368899999999999999999998 578999999987521                                35789999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      ++++| +..++.++. +....++ ++++|++++|--
T Consensus        62 i~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           62 IMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             EEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            99999 666666553 3344567 999999999765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.64  E-value=1.2e-07  Score=92.91  Aligned_cols=124  Identities=15%  Similarity=0.242  Sum_probs=83.2

Q ss_pred             cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhccCCCCCccccccCCH
Q 019328          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .+++..-++|||||+|.||..+|..|+ . |.+|++||+++... +....+.        ...+.. .  ........++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La-~-G~~V~~~D~~~~~v-~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~ttd~  103 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIA-Q-NHEVVALDIVQAKV-DMLNQKISPIVDKEIQEYLAE-K--PLNFRATTDK  103 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHH-c-CCeEEEEecCHHHh-hHHhccCCccccccHHHHHhh-c--cCCeEEEcCH
Confidence            456777789999999999999999985 5 99999999987642 1111100        000000 0  0112234688


Q ss_pred             HHHhhcCCEEEEcCCCCccc-------cccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          231 DEVLREADVISLHPVLDKTT-------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       231 ~ell~~sDiV~l~lplt~~t-------~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ++.++.||+|++|+|...+.       ..+.  -+.... +++|+++|+.|+-++--.+.+.+.+.+.
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~  170 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID  170 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence            99999999999999954321       1222  134555 8999999999998888888999888765

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.60  E-value=1.8e-07  Score=88.14  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=75.5

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChh-hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ...++|||||+|.||..+|+.|+ ..|    .+|++|||++. ...+... .+            +.....+..++++.|
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~-~~G~~~~~~V~v~~r~~~~~~~~~l~-~~------------G~~~~~~~~e~~~~a   85 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFT-AAGVLAAHKIMASSPDMDLATVSALR-KM------------GVKLTPHNKETVQHS   85 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHH-HTTSSCGGGEEEECSCTTSHHHHHHH-HH------------TCEEESCHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH-HCCCCCcceEEEECCCccHHHHHHHH-Hc------------CCEEeCChHHHhccC
Confidence            44468999999999999999984 567    78999999874 1222211 11            112235788899999


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      |+|++++| ......++ .+....++++.++|+++-|--  .+.|.+.+.+
T Consensus        86 DvVilav~-~~~~~~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           86 DVLFLAVK-PHIIPFIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             SEEEECSC-GGGHHHHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             CEEEEEeC-HHHHHHHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            99999999 44555544 345556889999999977643  4567677764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.59  E-value=8.6e-08  Score=88.62  Aligned_cols=92  Identities=18%  Similarity=0.291  Sum_probs=68.8

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|||||+ |.||+.+|+.| ...|.+|++|||++.... ...+ +       +   .   ...++.+++++||+|++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~~-~~~~-~-------g---~---~~~~~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGRD-RLQG-M-------G---I---PLTDGDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHHH-HHHH-T-------T---C---CCCCSSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHHH-HHHh-c-------C---C---CcCCHHHHhcCCCEEEEcC
Confidence            58999999 99999999998 577899999999875421 1111 1       1   1   1136678889999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |... ++.++ ++....+++++++|+++.|.
T Consensus        76 ~~~~-~~~v~-~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           76 PDNI-IEKVA-EDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             CHHH-HHHHH-HHHGGGSCTTCEEEESCSHH
T ss_pred             CchH-HHHHH-HHHHHhCCCCCEEEECCCCc
Confidence            9433 45544 45556789999999999887

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.57  E-value=6.1e-07  Score=82.94  Aligned_cols=112  Identities=11%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .++|||||+|+||+.+|+.++ ..|.   +|.+|||++... +...+.+            +.....+..+++++||+|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~-~~g~~~~~V~v~dr~~~~~-~~l~~~~------------gi~~~~~~~~~~~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLI-ANGYDPNRICVTNRSLDKL-DFFKEKC------------GVHTTQDNRQGALNADVVV   68 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHH-HTTCCGGGEEEECSSSHHH-HHHHHTT------------CCEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEEcccHHHHHHHHHHH-HCCCCCCeEEEEeCCHHHH-HHHHHHc------------CCEEeCChHHHHhcCCeEE
Confidence            468999999999999999974 5677   899999987643 2222111            1223468889999999999


Q ss_pred             EcCCCCcccccccCHhHHcc-CCCCcEEEecCCCccCCHHHHHHHHHcC-CccEE
Q 019328          242 LHPVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRV  294 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~-mk~gailIN~sRG~~vd~~aL~~aL~~g-~i~ga  294 (342)
                      +++|. .....++ ++.-.. ++++.++|+++-|-  ..+.|.+.+..+ ++.++
T Consensus        69 lav~p-~~~~~vl-~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~~~~vvr~  119 (280)
T 3tri_A           69 LAVKP-HQIKMVC-EELKDILSETKILVISLAVGV--TTPLIEKWLGKASRIVRA  119 (280)
T ss_dssp             ECSCG-GGHHHHH-HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTCCSSEEEE
T ss_pred             EEeCH-HHHHHHH-HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCCCCeEEEE
Confidence            99982 3333333 333344 68888999887664  356787887652 44443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.56  E-value=3.6e-07  Score=90.96  Aligned_cols=155  Identities=21%  Similarity=0.264  Sum_probs=94.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhc---cCCCCCc--------cccccCCHHHH
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQPV--------TWKRASSMDEV  233 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~l~el  233 (342)
                      -++|||||.|.||..+|..++ ..|.+|++||+++...... .+.....+.   ..+....        ......+++ .
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~l~~~-~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~   81 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAA-SHGHQVLLYDISAEALTRA-IDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-A   81 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHH-HHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-G
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCeEEEEECCHHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-H
Confidence            358999999999999999985 6799999999997643221 111000000   0111000        011234665 5


Q ss_pred             hhcCCEEEEcCCCCcccccccCHhHHccCCCCcEE-EecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCC
Q 019328          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM  312 (342)
Q Consensus       234 l~~sDiV~l~lplt~~t~~li~~~~l~~mk~gail-IN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~  312 (342)
                      +++||+|+.++|.+.+.+.-+-++..+.++++++| .|+|.-+   ...+.+++.. .-...++..|.+-|.       +
T Consensus        82 ~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~-p~~~ig~hf~~Pa~v-------~  150 (483)
T 3mog_A           82 LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKN-PERVAGLHFFNPAPV-------M  150 (483)
T ss_dssp             GGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSS-GGGEEEEEECSSTTT-------C
T ss_pred             hcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccC-ccceEEeeecChhhh-------C
Confidence            78999999999977766655556677789999999 5777544   3566665543 345667777764442       1


Q ss_pred             CceEEcCCCCCCcHHHHHHHHH
Q 019328          313 KNAIVVPHIASASKWTREGMAT  334 (342)
Q Consensus       313 ~nvi~TPHia~~t~~~~~~~~~  334 (342)
                      +-+.+.|+-. .+.+..+.+..
T Consensus       151 ~Lvevv~g~~-Ts~e~~~~~~~  171 (483)
T 3mog_A          151 KLVEVVSGLA-TAAEVVEQLCE  171 (483)
T ss_dssp             CEEEEEECSS-CCHHHHHHHHH
T ss_pred             CeEEEecCCC-CCHHHHHHHHH
Confidence            3455555432 23444444433

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.56  E-value=1.9e-06  Score=79.56  Aligned_cols=171  Identities=18%  Similarity=0.247  Sum_probs=107.6

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccChh
Q 019328           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (342)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~~  103 (342)
                      ..++.|.+.+....++ ..+++|+.+.+.     +..++++++.+  ..++++ +++...--  |=+    -|+-.+++-
T Consensus        57 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----Dg~~~~N~g  129 (285)
T 3p2o_A           57 ACEECGIKSLVYHLNE-NITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDV----DGFHPINVG  129 (285)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GCT----TCCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcc--ccc----ccCCHhhhh
Confidence            4456688776554432 357888877662     24789998764  345544 44443211  211    122112211


Q ss_pred             HHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHHH
Q 019328          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (342)
Q Consensus       104 ~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA~  182 (342)
                      ...      .+.++.....++.-++-++    ++                     .+.++.||++.|||.|. +|+.+|+
T Consensus       130 ~l~------~g~~~g~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVvGrs~iVG~p~A~  178 (285)
T 3p2o_A          130 YLN------LGLESGFLPCTPLGVMKLL----KA---------------------YEIDLEGKDAVIIGASNIVGRPMAT  178 (285)
T ss_dssp             HHH------TTCCSSCCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             hhh------cCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchHHHHHHH
Confidence            111      1123313345555544222    11                     13589999999999998 6999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccC
Q 019328          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (342)
Q Consensus       183 ~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~m  262 (342)
                      .| ...|++|..++++                            ..++++.+++||+|+.+++.    .++|..+.   +
T Consensus       179 lL-~~~gAtVtv~h~~----------------------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~---v  222 (285)
T 3p2o_A          179 ML-LNAGATVSVCHIK----------------------------TKDLSLYTRQADLIIVAAGC----VNLLRSDM---V  222 (285)
T ss_dssp             HH-HHTTCEEEEECTT----------------------------CSCHHHHHTTCSEEEECSSC----TTCBCGGG---S
T ss_pred             HH-HHCCCeEEEEeCC----------------------------chhHHHHhhcCCEEEECCCC----CCcCCHHH---c
Confidence            97 6889999988753                            14788999999999999983    45677655   4


Q ss_pred             CCCcEEEecCCCcc
Q 019328          263 KKEAILVNCSRGPV  276 (342)
Q Consensus       263 k~gailIN~sRG~~  276 (342)
                      |||+++||++.-.+
T Consensus       223 k~GavVIDVgi~~~  236 (285)
T 3p2o_A          223 KEGVIVVDVGINRL  236 (285)
T ss_dssp             CTTEEEEECCCEEC
T ss_pred             CCCeEEEEeccCcc
Confidence            99999999986654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.47  E-value=7.1e-07  Score=88.05  Aligned_cols=119  Identities=15%  Similarity=0.172  Sum_probs=78.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCC--------CccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~s  237 (342)
                      ++|+|||+|.||..+|..|+ ..|.+|++||+++... +....+..... ..+..        .-......+++++++.|
T Consensus         3 mkI~VIG~G~vG~~lA~~La-~~G~~V~~~D~~~~~v-~~l~~g~~~i~-e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFA-ELGANVRCIDTDRNKI-EQLNSGTIPIY-EPGLEKMIARNVKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHTCSCCC-STTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHH-hcCCEEEEEECCHHHH-HHHHcCCCccc-CCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence            58999999999999999984 6799999999987642 22111100000 00000        00112346889999999


Q ss_pred             CEEEEcCCCCcc---------cccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          238 DVISLHPVLDKT---------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~lplt~~---------t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      |+|++|+|...+         .+..+ +.....+++|.++|+.|.-.+-..+.+.+.+.+
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            999999995532         22222 455667899999999997665556667666655

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.45  E-value=4.3e-07  Score=89.16  Aligned_cols=120  Identities=10%  Similarity=0.093  Sum_probs=78.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC-------cc-ccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-------VT-WKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~~s  237 (342)
                      .+|+|||+|.||..+|..|+ ..|.+|++||++++.. +....+.. .....+...       .+ .....++++.++.|
T Consensus         1 mkI~VIG~G~vG~~~A~~la-~~G~~V~~~d~~~~~~-~~l~~~~~-~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~a   77 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKI-DLINQGKS-PIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDS   77 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCC-SSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHhCCCC-CcCCCCHHHHHHhhcccCceEEeCCHHHHhccC
Confidence            37999999999999999984 6799999999987642 21111000 000000000       01 12346788889999


Q ss_pred             CEEEEcCCCCcccccccC--------HhHHccCCC---CcEEEecCCCccCC-HHHHHHHHHc
Q 019328          238 DVISLHPVLDKTTYHLIN--------KERLATMKK---EAILVNCSRGPVID-EVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~--------~~~l~~mk~---gailIN~sRG~~vd-~~aL~~aL~~  288 (342)
                      |+|++|+|...+..+..|        ++....+++   +.++|+.|...+-. .+.+.+.+.+
T Consensus        78 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999999996554222222        344456788   99999999777655 5667777765

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.45  E-value=2.2e-07  Score=84.40  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=69.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|||||+|.||+.+|+.|+ ..| .+|.+|||++... +...+.++            .....++++++ .+|+|++++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~r~~~~~-~~~~~~~g------------~~~~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLV-KQGGYRIYIANRGAEKR-ERLEKELG------------VETSATLPELH-SDDVLILAV   65 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHCSCEEEEECSSHHHH-HHHHHHTC------------CEEESSCCCCC-TTSEEEECS
T ss_pred             CEEEEECchHHHHHHHHHHH-HCCCCeEEEECCCHHHH-HHHHHhcC------------CEEeCCHHHHh-cCCEEEEEe
Confidence            37999999999999999984 568 8999999987542 22211111            11234666777 899999999


Q ss_pred             CCCcccccccCHhHHccCC-CCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          245 VLDKTTYHLINKERLATMK-KEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk-~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      | ....+.++     ..++ ++.++|+++.|--  .+.|.+.+..+
T Consensus        66 ~-~~~~~~v~-----~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           66 K-PQDMEAAC-----KNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             C-HHHHHHHH-----TTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             C-chhHHHHH-----HHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence            9 55444433     3332 2899999865543  36777777654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.44  E-value=1.1e-06  Score=86.48  Aligned_cols=120  Identities=14%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCC--------CCccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--------QPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~ell~~s  237 (342)
                      -+++|||+|.+|..+|..|+ ..|.+|++||+++.+. +....+.... ...+.        ..-......++.+.++.|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La-~~G~~V~~~D~~~~kv-~~l~~g~~~~-~epgl~~~~~~~~~~g~l~~ttd~~ea~~~a   85 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFS-DFGHEVVCVDKDARKI-ELLHQNVMPI-YEPGLDALVASNVKAGRLSFTTDLAEGVKDA   85 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCSTTH-HHHTTTCCSS-CCTTHHHHHHHHHHTTCEEEESCHHHHHTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHhcCCCCc-cCCCHHHHHHhhcccCCEEEECCHHHHHhcC
Confidence            47999999999999999985 6799999999987642 2211100000 00000        000112346899999999


Q ss_pred             CEEEEcCCCCcc----------cccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          238 DVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       238 DiV~l~lplt~~----------t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      |+|++|+|...+          .+..+ +.....|++|.++|+.|.-++--.+.+.+.+.+.
T Consensus        86 Dvvii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           86 DAVFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             SEEEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            999999985432          12222 4566789999999999976666667777777653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.41  E-value=1.4e-06  Score=83.45  Aligned_cols=118  Identities=14%  Similarity=0.124  Sum_probs=76.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh--ccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL--KANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .++|+|||.|.||..+|..| ...|.+|..|+|++... +..... +...  ......+.......++++.++.||+|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~L-a~~G~~V~l~~r~~~~~-~~i~~~-~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVL-ARKGQKVRLWSYESDHV-DEMQAE-GVNNRYLPNYPFPETLKAYCDLKASLEGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HTTTCCEEEECSCHHHH-HHHHHH-SSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHc-CCCcccCCCCccCCCeEEECCHHHHHhcCCEEEE
Confidence            46899999999999999998 46789999999986542 111110 0000  0000001112234688999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH----HHHHHHHH
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE----VALVEHLK  287 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~----~aL~~aL~  287 (342)
                      ++|. ...+.++ ++....+++++++|+++.|-..++    +.+.+.+.
T Consensus       106 aVp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~  152 (356)
T 3k96_A          106 VVPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELG  152 (356)
T ss_dssp             CCCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHC
T ss_pred             CCCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcC
Confidence            9993 3344433 455567899999999988766653    34444443

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.39  E-value=1e-06  Score=77.36  Aligned_cols=124  Identities=12%  Similarity=0.135  Sum_probs=81.6

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+|+| .|.||+.+++.| ...|.+|.++||+++.. +...+.++.....   ..  .. ..+++++++++|+|++++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~---~~--~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKA-EAKAAEYRRIAGD---AS--IT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHH-HHHHHHHHHHHSS---CC--EE-EEEHHHHHHHCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHhcccccc---CC--CC-hhhHHHHHhcCCEEEEeC
Confidence            3799999 999999999998 57789999999986542 2221111111100   00  11 257888899999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCC------------HHHHHHHHHcCCccEEEeecCCCCCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID------------EVALVEHLKQNPMFRVGLDVFEDEPY  304 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd------------~~aL~~aL~~g~i~gaalDV~~~EP~  304 (342)
                      | ...++.++. +....++ +.++|+++.|--.+            .+.+.+.+..    ...++++.+.|.
T Consensus        73 ~-~~~~~~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           73 P-WEHAIDTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             C-HHHHHHHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             C-hhhHHHHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            9 333444332 2333454 89999999876543            5677777753    235688877774

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.38  E-value=2e-06  Score=85.16  Aligned_cols=130  Identities=16%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH--h-hhhhh-----hccCCCCCccccccCCHHHHhhc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T-AYGQF-----LKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~--~-~~~~~-----~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      -++|||||.|.||..+|..++ ..|.+|++||+++........  . .+...     +..............++ +.++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la-~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  114 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELST  114 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTT
T ss_pred             CCEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCC
Confidence            468999999999999999984 679999999998754221100  0 00000     00000000001113466 46789


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~  299 (342)
                      ||+|+.++|...+.+.-+-++....++++++|+.. ..+ +....|.+++.. .-.-.++..|
T Consensus       115 aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn-Ts~-~~~~~la~~~~~-~~~~ig~hf~  174 (463)
T 1zcj_A          115 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN-TSA-LNVDDIASSTDR-PQLVIGTHFF  174 (463)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSS-SCHHHHHTTSSC-GGGEEEEEEC
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC-CCC-cCHHHHHHHhcC-CcceEEeecC
Confidence            99999999965544444445566678999999863 333 344567666543 2334566666

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.38  E-value=6.3e-07  Score=81.33  Aligned_cols=99  Identities=23%  Similarity=0.335  Sum_probs=67.0

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .++|||||+|.||+.+|+.|+ ..|    .+|.+|||+++.                    .+.....+++++++.||+|
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~-~~g~~~~~~v~~~~~~~~~--------------------~g~~~~~~~~~~~~~~D~v   62 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIA-NANIIKKENLFYYGPSKKN--------------------TTLNYMSSNEELARHCDII   62 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHH-HHTSSCGGGEEEECSSCCS--------------------SSSEECSCHHHHHHHCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCCCCCeEEEEeCCccc--------------------CceEEeCCHHHHHhcCCEE
Confidence            358999999999999999984 556    689999987542                    0122245788999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ++++| ....+.++. +....++ +..+|....|  ++.+.+.+.+..+
T Consensus        63 i~~v~-~~~~~~v~~-~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           63 VCAVK-PDIAGSVLN-NIKPYLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             EECSC-TTTHHHHHH-HSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             EEEeC-HHHHHHHHH-HHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            99999 444554442 3344564 4455554444  3345666666553

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.37  E-value=1.2e-06  Score=83.00  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=75.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCC-Cccc-cccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||+|.||..+|..| ...|.+|.+||++++.. +...+..+..+...... .... ....+++++++.+|+|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            5899999999999999998 46789999999986542 22211111000000000 0000 1245888989999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      +|... +..++ ++....+++++++|+. -|.......+.+.+.+
T Consensus        83 v~~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCchH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            99544 34443 4556678999999998 4422344445666654

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.36  E-value=1.1e-06  Score=81.19  Aligned_cols=80  Identities=15%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             cccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .++.|+++.|||.|. +|+.+|+.| ...|++|..++++.                            .++.+.+++||+
T Consensus       155 i~l~gk~vvVIG~s~iVG~p~A~lL-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADI  205 (288)
T 1b0a_A          155 IDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENADL  205 (288)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCSE
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHH-HHCCCeEEEEeCCc----------------------------hhHHHHhccCCE
Confidence            489999999999997 599999997 68999999886431                            478899999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      |+.+++.    .++|..+.+   |||+++||+|.-.+
T Consensus       206 VI~Avg~----p~lI~~~~v---k~GavVIDVgi~r~  235 (288)
T 1b0a_A          206 LIVAVGK----PGFIPGDWI---KEGAIVIDVGINRL  235 (288)
T ss_dssp             EEECSCC----TTCBCTTTS---CTTCEEEECCCEEC
T ss_pred             EEECCCC----cCcCCHHHc---CCCcEEEEccCCcc
Confidence            9999982    336776664   89999999997654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.35  E-value=1.8e-06  Score=79.59  Aligned_cols=171  Identities=19%  Similarity=0.215  Sum_probs=107.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     +..|+++++.+  ..+++. +++...--  |=+    -|+-.+++
T Consensus        58 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDV----DG~~~~N~  130 (286)
T 4a5o_A           58 KDCEEVGFLSQAYDLPA-ETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPD--KDV----DGFHPYNI  130 (286)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGG--GCT----TCCSHHHH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhhh
Confidence            34566788776554433 357888877652     14789998754  345543 33332111  210    11211221


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      -...      .+.++ ....++.-++-++    ++                     .+.++.||++.|||.|. +|+.+|
T Consensus       131 g~l~------~g~~~-~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVvGrs~iVG~plA  178 (286)
T 4a5o_A          131 GRLA------QRMPL-LRPCTPKGIMTLL----AS---------------------TGADLYGMDAVVVGASNIVGRPMA  178 (286)
T ss_dssp             HHHH------TTCCS-SCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECTTSTTHHHHH
T ss_pred             HHHh------cCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence            1111      11233 3345555544322    11                     13589999999999987 799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      +.| ...|++|....++                            ..++++.+++||+|+.+++.    .++|..+.+  
T Consensus       179 ~lL-~~~gAtVtv~hs~----------------------------T~~L~~~~~~ADIVI~Avg~----p~~I~~~~v--  223 (286)
T 4a5o_A          179 LEL-LLGGCTVTVTHRF----------------------------TRDLADHVSRADLVVVAAGK----PGLVKGEWI--  223 (286)
T ss_dssp             HHH-HHTTCEEEEECTT----------------------------CSCHHHHHHTCSEEEECCCC----TTCBCGGGS--
T ss_pred             HHH-HHCCCeEEEEeCC----------------------------CcCHHHHhccCCEEEECCCC----CCCCCHHHc--
Confidence            997 6889999987642                            13788999999999999983    456776654  


Q ss_pred             CCCCcEEEecCCCcc
Q 019328          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~gailIN~sRG~~  276 (342)
                       |||+++||++.-.+
T Consensus       224 -k~GavVIDvgi~~~  237 (286)
T 4a5o_A          224 -KEGAIVIDVGINRQ  237 (286)
T ss_dssp             -CTTCEEEECCSCSS
T ss_pred             -CCCeEEEEeccccc
Confidence             99999999986553

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.35  E-value=1.1e-06  Score=83.39  Aligned_cols=108  Identities=17%  Similarity=0.186  Sum_probs=69.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCC-------cEEEEEcCChh-----hHHHHHHhhhhhhhcc-CC-CCCccccccCCH
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKA-NG-EQPVTWKRASSM  230 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l  230 (342)
                      .++|+|||.|.||..+|..|+ ..|       .+|.+||+++.     .. +.... .+..... .+ ..........++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~-~~g~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVG-GNAAQLAQFDPRVTMWVFEEDIGGKKLT-EIINT-QHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHH-HHHHHCTTEEEEEEEECCCCBSSSSBHH-HHHHH-HSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECCCHHHHHHHHHHH-hcCCcccCCCCeEEEEEcChhhhhhHHH-HHHHh-cCcccccCCcccCccCeEEEcCH
Confidence            358999999999999999985 456       89999999865     22 11111 0000000 00 001112224578


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       231 ~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      +++++.||+|++++|. ..+..++ ++....+++++++|+++.|-..
T Consensus        85 ~~~~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~~  129 (354)
T 1x0v_A           85 VQAAEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVDE  129 (354)
T ss_dssp             HHHHTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBCS
T ss_pred             HHHHcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccCC
Confidence            8889999999999994 3444443 3444567899999999887543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.34  E-value=1.3e-06  Score=80.72  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=73.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.||++.|+|.|.+|+.++..| ...|+ +|.+++|+.++.. +        +.    .........+++++++++|+|
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a~-~--------la----~~~~~~~~~~~~~~~~~aDiV  179 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANEL-YKIVRPTLTVANRTMSRFN-N--------WS----LNINKINLSHAESHLDEFDII  179 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHH-HTTCCSCCEEECSCGGGGT-T--------CC----SCCEEECHHHHHHTGGGCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHHH-H--------HH----HhcccccHhhHHHHhcCCCEE
Confidence            57899999999999999999998 58898 8999999875421 1        00    011111234566778899999


Q ss_pred             EEcCCCC--cccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt--~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|..  ++....+.   .+.++++.+++++.-.+. .+.-+.+|-+.|
T Consensus       180 InaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~-~T~ll~~A~~~G  226 (277)
T 3don_A          180 INTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPY-KTPILIEAEQRG  226 (277)
T ss_dssp             EECCC-------CCSSC---CTTCCSSCEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             EECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCC-CCHHHHHHHHCc
Confidence            9999964  32222232   456789999999987643 344334444444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.34  E-value=2.2e-06  Score=85.24  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=78.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhhhhhhccCCC-------CCccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-------QPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ell~~s  237 (342)
                      ++|+|||+|.||..+|..|++. .|.+|++||+++... +....+.. .....+.       .........++.+.++.|
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v-~~l~~g~~-~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKI-AEWNSDKL-PIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSC-SSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHCCCC-CcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            5899999999999999998643 378999999987642 11111000 0000000       000112235777888999


Q ss_pred             CEEEEcCCCCccc-----------cccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          238 DVISLHPVLDKTT-----------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~lplt~~t-----------~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      |+|++|+|.....           ..+.  -+...+.+++|.++|+.|.-.+-..+.+.+.+.+
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999999854321           0111  2345667999999999987766666778888876

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.33  E-value=1.8e-06  Score=79.41  Aligned_cols=171  Identities=17%  Similarity=0.167  Sum_probs=109.2

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccChh
Q 019328           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDVN  103 (342)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~~  103 (342)
                      ..++.|++.+....++ ..+++|+.+.+.     +.+|+++++.+  ..+++.. ++...-.  |=+    -|+..+++-
T Consensus        56 ~~~~~Gi~~~~~~lp~-~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~--KDV----DG~~p~n~g  128 (281)
T 2c2x_A           56 DCAKVGITSIRRDLPA-DISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPA--KDA----DGLHPTNLG  128 (281)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GBT----TSCCHHHHH
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--CCc----cCCChhhHH
Confidence            3456688776554433 457888887662     24789998753  3454443 3332111  210    122222222


Q ss_pred             HHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChH-HHHHHH
Q 019328          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYAR  182 (342)
Q Consensus       104 ~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~I-G~~vA~  182 (342)
                      ...      .+.++ ....+++-++-++-    +                     .+.++.||++.|||.|.| |+.+|+
T Consensus       129 ~l~------~g~~~-~~PcTp~gi~~ll~----~---------------------~~i~l~gk~vvVvG~s~iVG~p~A~  176 (281)
T 2c2x_A          129 RLV------LGTPA-PLPCTPRGIVHLLR----R---------------------YDISIAGAHVVVIGRGVTVGRPLGL  176 (281)
T ss_dssp             HHH------HTCCC-CCCHHHHHHHHHHH----H---------------------TTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             HHh------CCCCC-CCCChHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCcHHHHHHHH
Confidence            221      12243 44566665443331    1                     134799999999999986 999999


Q ss_pred             HHHhcC--CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328          183 MMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       183 ~l~~a~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~  260 (342)
                      .| ...  |++|..++++.                            .++.+.+++||+|+.+++.    .++|..+.+ 
T Consensus       177 lL-~~~g~~atVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~v-  222 (281)
T 2c2x_A          177 LL-TRRSENATVTLCHTGT----------------------------RDLPALTRQADIVVAAVGV----AHLLTADMV-  222 (281)
T ss_dssp             HH-TSTTTCCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSCC----TTCBCGGGS-
T ss_pred             HH-hcCCCCCEEEEEECch----------------------------hHHHHHHhhCCEEEECCCC----CcccCHHHc-
Confidence            97 677  89999886531                            4788999999999999982    336777764 


Q ss_pred             cCCCCcEEEecCCCccC
Q 019328          261 TMKKEAILVNCSRGPVI  277 (342)
Q Consensus       261 ~mk~gailIN~sRG~~v  277 (342)
                        |+|+++||+|.-.+-
T Consensus       223 --k~GavVIDVgi~r~~  237 (281)
T 2c2x_A          223 --RPGAAVIDVGVSRTD  237 (281)
T ss_dssp             --CTTCEEEECCEEEET
T ss_pred             --CCCcEEEEccCCCCC
Confidence              899999999976643

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.33  E-value=1.3e-06  Score=91.12  Aligned_cols=128  Identities=20%  Similarity=0.198  Sum_probs=79.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH---hhhhhhhccCCCC--------CccccccCCHHHHh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV---TAYGQFLKANGEQ--------PVTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~~~~l~ell  234 (342)
                      ++|||||.|.||..+|..++ ..|.+|++||+++........   ..+....+ .+..        ........++ +.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~d~-~~~  389 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVKANLQSRVR-KGSMSQEKFEKTMSLLKGSLDY-ESF  389 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC-----CTTHHHHTTTSEEEESSS-GGG
T ss_pred             cEEEEEcCCHhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHhcceEEeCCH-HHH
Confidence            68999999999999999985 679999999999764321100   00000000 1100        0001123456 568


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~  300 (342)
                      ++||+|+.++|.+.+.+.-+-++..+.++++++++ |+|.   +....+.+.+.. .-.-.++..|.
T Consensus       390 ~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt---l~i~~la~~~~~-p~~~iG~hf~~  452 (725)
T 2wtb_A          390 RDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST---IDLNKIGERTKS-QDRIVGAHFFS  452 (725)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS---SCHHHHTTTCSC-TTTEEEEEECS
T ss_pred             CCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC---CCHHHHHHHhcC-CCCEEEecCCC
Confidence            99999999999777666555566677899999995 4543   333455555532 22345666666

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.32  E-value=2.1e-06  Score=83.45  Aligned_cols=116  Identities=16%  Similarity=0.253  Sum_probs=76.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhccCCCCCccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ++|+|||+|.||..+|..|+ . |.+|++||+++... +.......        ..+.. .  ........++.+.++.|
T Consensus         1 MkI~VIG~G~vG~~~A~~La-~-G~~V~~~d~~~~~~-~~l~~~~~~i~e~~l~~~~~~-~--~~~l~~t~~~~~~~~~a   74 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKS-K--QLSIKATLDSKAAYKEA   74 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHh-C-CCEEEEEECCHHHH-HHHHcCCCCcCCCCHHHHHHh-c--cCcEEEeCCHHHHhcCC
Confidence            37999999999999999984 5 99999999987542 21111000        00000 0  00112235677888999


Q ss_pred             CEEEEcCCCCc----------ccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          238 DVISLHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       238 DiV~l~lplt~----------~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      |+|++|+|...          .....+ +.... +++++++|+.|.-++-..+.+.+.+.+.
T Consensus        75 Dvviiavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           75 ELVIIATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             SEEEECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             CEEEEecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            99999999653          122222 33445 8999999998877776677787777654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.31  E-value=1.9e-06  Score=79.57  Aligned_cols=169  Identities=14%  Similarity=0.226  Sum_probs=106.4

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHH-HHHHhhccCCceEEEcccccCccChh
Q 019328           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (342)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~-~~~~~~~l~~k~i~~~g~G~d~id~~  103 (342)
                      ..++.|.+.+....++ ..+++|+.+.+.     +..|+++++.+  ..++++ +++...--  |=+    -|+-.+++-
T Consensus        58 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----DG~~~~N~G  130 (285)
T 3l07_A           58 ACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KDV----DGFHPTNVG  130 (285)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--GBT----TCCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhhee
Confidence            4456688776554432 357888877662     14789998764  345544 34433211  211    122212221


Q ss_pred             HHHhCCceEEcC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       104 ~a~~~gI~v~n~-p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      ....      +. ++ ....++.-++-++    ++                     .+.++.||++.|||.|. +|+.+|
T Consensus       131 ~l~~------g~~~~-~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~A  178 (285)
T 3l07_A          131 RLQL------RDKKC-LESCTPKGIMTML----RE---------------------YGIKTEGAYAVVVGASNVVGKPVS  178 (285)
T ss_dssp             HHHH------TCTTC-CCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             ehhc------CCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence            1111      12 33 3345555544322    11                     13489999999999998 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      +.| ...|++|...+++                            ..++++.+++||+|+.+++.    .++|..+.   
T Consensus       179 ~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  222 (285)
T 3l07_A          179 QLL-LNAKATVTTCHRF----------------------------TTDLKSHTTKADILIVAVGK----PNFITADM---  222 (285)
T ss_dssp             HHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCSEEEECCCC----TTCBCGGG---
T ss_pred             HHH-HHCCCeEEEEeCC----------------------------chhHHHhcccCCEEEECCCC----CCCCCHHH---
Confidence            997 6889999987653                            13788999999999999983    45676655   


Q ss_pred             CCCCcEEEecCCCc
Q 019328          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~gailIN~sRG~  275 (342)
                      +|||+++||++.-.
T Consensus       223 vk~GavVIDvgi~~  236 (285)
T 3l07_A          223 VKEGAVVIDVGINH  236 (285)
T ss_dssp             SCTTCEEEECCCEE
T ss_pred             cCCCcEEEEecccC
Confidence            49999999998654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.31  E-value=2e-06  Score=79.91  Aligned_cols=81  Identities=16%  Similarity=0.290  Sum_probs=66.9

Q ss_pred             cccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .++.|+++.|||.|. +|+.+|+.| ...|++|..++++                            ..++.+.+++||+
T Consensus       161 i~l~gk~vvVIG~s~iVG~p~A~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~ADI  211 (301)
T 1a4i_A          161 VPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSK----------------------------TAHLDEEVNKGDI  211 (301)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCSE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHH-HhCCCeEEEEECC----------------------------cccHHHHhccCCE
Confidence            589999999999996 699999997 6899999988643                            2478899999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v  277 (342)
                      |+.+++.    .++|..+.+   |||+++||+|.-.+-
T Consensus       212 VI~Avg~----p~~I~~~~v---k~GavVIDVgi~~~~  242 (301)
T 1a4i_A          212 LVVATGQ----PEMVKGEWI---KPGAIVIDCGINYVP  242 (301)
T ss_dssp             EEECCCC----TTCBCGGGS---CTTCEEEECCCBC--
T ss_pred             EEECCCC----cccCCHHHc---CCCcEEEEccCCCcc
Confidence            9999984    346777664   799999999986643

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.31  E-value=3.5e-06  Score=76.80  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=75.2

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      +.| +++|||.|.+|+.++..| ...|+ +|.+++|+.++. +++.            ...+.....++.+.++++|+|+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L-~~~G~~~I~v~nR~~~ka-~~la------------~~~~~~~~~~~~~~~~~aDiVI  171 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYAL-LQMGVKDIWVVNRTIERA-KALD------------FPVKIFSLDQLDEVVKKAKSLF  171 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHH-HHTTCCCEEEEESCHHHH-HTCC------------SSCEEEEGGGHHHHHHTCSEEE
T ss_pred             CCC-eEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHH------------HHcccCCHHHHHhhhcCCCEEE
Confidence            578 999999999999999997 57898 899999987642 1110            0111122457888899999999


Q ss_pred             EcCCCC--cccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          242 LHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       242 l~lplt--~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +++|..  ++ ...+..+.   ++++.+++++.-+   .+.-|.+|.+.|
T Consensus       172 natp~gm~p~-~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          172 NTTSVGMKGE-ELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             ECSSTTTTSC-CCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             ECCCCCCCCC-CCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            999864  22 22345444   4689999999888   566666666665

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.31  E-value=1.7e-06  Score=90.10  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=92.0

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--H-hhhhhhhccCCCCC--------ccccccCCHHHH
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--V-TAYGQFLKANGEQP--------VTWKRASSMDEV  233 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~-~~~~~~~~~~~~~~--------~~~~~~~~l~el  233 (342)
                      =++|||||.|.||..+|..++ ..|.+|++||+++.......  . ..+.... ..+...        .......++ +.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~d~-~~  390 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGRV-DKGRMTPAKMAEVLNGIRPTLSY-GD  390 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHHH-TTTSSCHHHHHHHHHHEEEESSS-TT
T ss_pred             CCEEEEECCChhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHhcCeEEECCH-HH
Confidence            357999999999999999985 66999999999976432110  0 0000000 111100        001123456 66


Q ss_pred             hhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEE-ecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCC
Q 019328          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM  312 (342)
Q Consensus       234 l~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~  312 (342)
                      +++||+|+.++|.+.+.+.-+-.+..+.++++++++ |+|.   +....+.+.+.. .-.-.++..|.  |..     .+
T Consensus       391 ~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt---l~i~~la~~~~~-~~~~ig~hf~~--P~~-----~~  459 (715)
T 1wdk_A          391 FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST---ISISLLAKALKR-PENFVGMHFFN--PVH-----MM  459 (715)
T ss_dssp             GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS---SCHHHHGGGCSC-GGGEEEEECCS--STT-----TC
T ss_pred             HCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC---CCHHHHHHHhcC-ccceEEEEccC--Ccc-----cC
Confidence            899999999999877766655566777899999997 5543   334456655532 22346667665  322     23


Q ss_pred             CceEEcCCCCCCcHHHHHHHHH
Q 019328          313 KNAIVVPHIASASKWTREGMAT  334 (342)
Q Consensus       313 ~nvi~TPHia~~t~~~~~~~~~  334 (342)
                      +.+.+.|+- ..+.++.+.+..
T Consensus       460 ~lvevv~g~-~t~~e~~~~~~~  480 (715)
T 1wdk_A          460 PLVEVIRGE-KSSDLAVATTVA  480 (715)
T ss_dssp             CEEEEEECS-SCCHHHHHHHHH
T ss_pred             ceEEEEECC-CCCHHHHHHHHH
Confidence            445555442 124455544443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.30  E-value=1.8e-06  Score=79.26  Aligned_cols=77  Identities=9%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             cCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      +.||++.|||.|. +|+.+|+.| .+.|++|..++++                            ..++++.+++||+|+
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL-~~~gAtVtv~~~~----------------------------t~~L~~~~~~ADIVI  198 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMML-LNRNYTVSVCHSK----------------------------TKDIGSMTRSSKIVV  198 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTT----------------------------CSCHHHHHHHSSEEE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHH-HHCCCeEEEEeCC----------------------------cccHHHhhccCCEEE
Confidence            8999999999986 799999997 6889999988653                            147889999999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      .+++.    .++|..+.   +|||+++||++.-.
T Consensus       199 ~Avg~----p~~I~~~~---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          199 VAVGR----PGFLNREM---VTPGSVVIDVGINY  225 (276)
T ss_dssp             ECSSC----TTCBCGGG---CCTTCEEEECCCEE
T ss_pred             ECCCC----CccccHhh---ccCCcEEEEeccCc
Confidence            99984    34677665   49999999998654

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.30  E-value=6.7e-07  Score=74.10  Aligned_cols=104  Identities=12%  Similarity=0.112  Sum_probs=74.6

Q ss_pred             ccCCCEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      -.+-++|+|||.    |.+|+.+++.| ...|.+|+.+||.....                   .+...+.+++++.+..
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~~vnp~~~~i-------------------~G~~~~~s~~el~~~v   70 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDV   70 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTC
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEEEeCCCCCeE-------------------CCeeecCCHHHhCCCC
Confidence            355678999999    99999999998 57888998888864220                   1223457899999999


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      |++++++| .+....++. +..+ ...++++++++.    ..+++.++.++..+.
T Consensus        71 Dlvii~vp-~~~v~~v~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           71 DVIVFVVP-PKVGLQVAK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             CEEEECSC-HHHHHHHHH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             CEEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            99999999 466666653 3343 667778887754    256777777765554

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.29  E-value=1.3e-06  Score=82.24  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             cccccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc-c-----c--CC
Q 019328          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-R-----A--SS  229 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~--~~  229 (342)
                      .|.++.|+++.|||.|.| |+.+|+.| .+.|++|..+||+.....+           .+........ .     .  .+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~-----------ra~~la~~~~~~t~~~~t~~~~  238 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFT-----------RGESLKLNKHHVEDLGEYSEDL  238 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEE-----------SCCCSSCCCCEEEEEEECCHHH
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHh-----------HHHHHhhhcccccccccccHhH
Confidence            456899999999999986 99999997 6899999999987432100           0000000001 1     1  47


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccc-cCHhHHccCCCCcEEEecCCC
Q 019328          230 MDEVLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       230 l~ell~~sDiV~l~lplt~~t~~l-i~~~~l~~mk~gailIN~sRG  274 (342)
                      +++.+.+||+|+.+++.    .++ |..+.   +|+|+++||+|.-
T Consensus       239 L~e~l~~ADIVIsAtg~----p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          239 LKKCSLDSDVVITGVPS----ENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             HHHHHHHCSEEEECCCC----TTCCBCTTT---SCTTEEEEECSSS
T ss_pred             HHHHhccCCEEEECCCC----CcceeCHHH---cCCCeEEEEcCCC
Confidence            88999999999999984    234 66665   4899999999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.29  E-value=7.4e-07  Score=85.14  Aligned_cols=117  Identities=14%  Similarity=0.151  Sum_probs=73.1

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc-CC-CCCccccccCCHHHHhhcCCEEEEcC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NG-EQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +|||||+|.||..+|..| ...|.+|.+|||++... +...+. +..... .+ ..........+++++++.||+|++++
T Consensus        17 kI~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEEV-RLVNEK-RENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTEEEEEEECSCHHHH-HHHHHH-TBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHc-CcccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            899999999999999998 46789999999986542 221111 000000 00 00111223357888899999999999


Q ss_pred             CCCcccccccCHh---HHccCCC-CcEEEecCCCccCC-HHHHHHHHH
Q 019328          245 VLDKTTYHLINKE---RLATMKK-EAILVNCSRGPVID-EVALVEHLK  287 (342)
Q Consensus       245 plt~~t~~li~~~---~l~~mk~-gailIN~sRG~~vd-~~aL~~aL~  287 (342)
                      |. ..+..++...   ....+++ ++++|+++.|-..+ .+.+.+.+.
T Consensus        94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~  140 (366)
T 1evy_A           94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIG  140 (366)
T ss_dssp             CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHT
T ss_pred             Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHH
Confidence            93 4455544321   4445678 99999998775443 223344443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.29  E-value=1.7e-06  Score=85.94  Aligned_cols=116  Identities=13%  Similarity=0.112  Sum_probs=75.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcC-Cc-EEEEEcCChh----hHHHHHHhhhh----------hhhccCCCCCccccccCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGF-KM-NLIYYDLYQA----TRLEKFVTAYG----------QFLKANGEQPVTWKRASS  229 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~-g~-~V~~~d~~~~----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  229 (342)
                      ++|||||+|.||..+|..|+ .. |. +|++||+++.    .. +....+..          ..++.....+ ......+
T Consensus        19 mkIaVIGlG~mG~~lA~~la-~~~G~~~V~~~D~~~~~~~~kv-~~l~~g~~~i~~~e~gl~~l~~~~~~~g-~l~~ttd   95 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSKSSGYKI-EMLNRGESPLKGEEPGLEELIGKVVKAG-KFECTPD   95 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HSTTCCEEEEECCCCTTTTTHH-HHHTTTCCCSSCCGGGHHHHHHHHHHTT-CEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HhCCCCeEEEEECChhHhHHHH-HHHHhcCCCccccCCCHHHHHHhhcccC-CeEEeCc
Confidence            58999999999999999985 56 88 9999999876    32 11111000          0000000000 0111234


Q ss_pred             HHHHhhcCCEEEEcCCCCc--------cccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHH
Q 019328          230 MDEVLREADVISLHPVLDK--------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEH  285 (342)
Q Consensus       230 l~ell~~sDiV~l~lplt~--------~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~a  285 (342)
                       .+.++.||+|++|+|...        +...+.  -+.....+++|.++|+.|.-++--.+.+.+.
T Consensus        96 -~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           96 -FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             -GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             -HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence             678899999999999653        222222  2456677999999999998877666777653

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.28  E-value=2e-06  Score=79.89  Aligned_cols=173  Identities=21%  Similarity=0.228  Sum_probs=107.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--cCccHHH-HHHhhccCCceEEEcccccCccCh
Q 019328           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~~~~--~~~~~~~-~~~~~~l~~k~i~~~g~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     +..|+++++.+  ..++++. ++...--  |=+    -|+-.+++
T Consensus        60 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDV----DG~~~~N~  132 (300)
T 4a26_A           60 KAAAEVGMASFNVELPE-DISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPH--KDA----DALLPVNV  132 (300)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGG--GCT----TCCSHHHH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcc--ccc----ccCCcceE
Confidence            34556788776554433 357888877662     14789998764  3455443 3332111  210    11111221


Q ss_pred             hHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh-HHHHHH
Q 019328          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~-IG~~vA  181 (342)
                      -.....+    ..++ ....++.-++-++    ++                     .+.++.||++.|||.|. +|+.+|
T Consensus       133 G~l~~g~----~~~~-~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~A  182 (300)
T 4a26_A          133 GLLHYKG----REPP-FTPCTAKGVIVLL----KR---------------------CGIEMAGKRAVVLGRSNIVGAPVA  182 (300)
T ss_dssp             HHHHCTT----CCCS-CCCHHHHHHHHHH----HH---------------------HTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             EEeecCC----CcCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCchHHHHHH
Confidence            1111100    0233 3345555544322    11                     13489999999999988 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHH--HHhhcCCEEEEcCCCCcccccccCHhHH
Q 019328          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADVISLHPVLDKTTYHLINKERL  259 (342)
Q Consensus       182 ~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~~sDiV~l~lplt~~t~~li~~~~l  259 (342)
                      +.| ...|++|..++++.                            .+++  +.+++||+|+.++|.    .++|..+. 
T Consensus       183 ~lL-~~~gAtVtv~~~~T----------------------------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~~-  228 (300)
T 4a26_A          183 ALL-MKENATVTIVHSGT----------------------------STEDMIDYLRTADIVIAAMGQ----PGYVKGEW-  228 (300)
T ss_dssp             HHH-HHTTCEEEEECTTS----------------------------CHHHHHHHHHTCSEEEECSCC----TTCBCGGG-
T ss_pred             HHH-HHCCCeEEEEeCCC----------------------------CCchhhhhhccCCEEEECCCC----CCCCcHHh-
Confidence            997 68899999987632                            2455  889999999999994    34677655 


Q ss_pred             ccCCCCcEEEecCCCcc
Q 019328          260 ATMKKEAILVNCSRGPV  276 (342)
Q Consensus       260 ~~mk~gailIN~sRG~~  276 (342)
                        +|+|+++||++.-.+
T Consensus       229 --vk~GavVIDvgi~~~  243 (300)
T 4a26_A          229 --IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             --SCTTCEEEECCCEEE
T ss_pred             --cCCCcEEEEEeccCC
Confidence              499999999986543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.27  E-value=3.4e-06  Score=83.83  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=75.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCC--------CccccccCCHHHHhhc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLRE  236 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~  236 (342)
                      ..+|+|||+|.||..+|..|+ ..|.+|++||++++.. +........ ....+..        ........++++.++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la-~~G~~V~~~d~~~~~v-~~l~~~~~~-i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~   84 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLA-DIGHDVFCLDVDQAKI-DILNNGGVP-IHEPGLKEVIARNRSAGRLRFSTDIEAAVAH   84 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCCS-SCCTTHHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHCCCCC-cCCCCHHHHHHHhcccCCEEEECCHHHHhhc
Confidence            358999999999999999985 6799999999987542 221111000 0000000        0011234578888999


Q ss_pred             CCEEEEcCCCCc---------ccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          237 ADVISLHPVLDK---------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       237 sDiV~l~lplt~---------~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      ||+|++|+|...         ..+..+ +.....+++++++|+.|.-.+=..+.+.+.+.+
T Consensus        85 aDvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           85 GDVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             CSEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            999999999531         222222 345567899999999985444344455555543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.26  E-value=2.4e-06  Score=83.66  Aligned_cols=112  Identities=19%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH--------
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--------  233 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--------  233 (342)
                      .-+|.++.|||+|.+|..+|..|+ ..|.+|++||+++++. +....         +..+.   ....++++        
T Consensus         8 ~~~~~~~~ViGlGyvGlp~A~~La-~~G~~V~~~D~~~~kv-~~L~~---------g~~pi---~epgl~~ll~~~~~~g   73 (431)
T 3ojo_A            8 HHHGSKLTVVGLGYIGLPTSIMFA-KHGVDVLGVDINQQTI-DKLQN---------GQISI---EEPGLQEVYEEVLSSG   73 (431)
T ss_dssp             ----CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHT---------TCCSS---CCTTHHHHHHHHHHTT
T ss_pred             cccCCccEEEeeCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHHC---------CCCCc---CCCCHHHHHHhhcccC
Confidence            457899999999999999999985 6799999999997653 22111         10000   11122222        


Q ss_pred             -------hhcCCEEEEcCCCCcccc--------ccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          234 -------LREADVISLHPVLDKTTY--------HLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       234 -------l~~sDiV~l~lplt~~t~--------~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                             +++||+|++|+|......        .+.  -+...+.|++|.++|+.|.-++--.+.+.+.+.
T Consensus        74 ~l~~ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~  144 (431)
T 3ojo_A           74 KLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI  144 (431)
T ss_dssp             CEEEESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred             ceEEeCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence                   357999999999544221        122  245667799999999999888777777777653

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.25  E-value=2.1e-06  Score=80.49  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcC--ChhhHHHHHHhhhhhhhccCCCCCccccccC--CHHHHhhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRAS--SMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ell~~sDiV~  241 (342)
                      ++|+|||+|.||..+|..|+ ..|.+|.+|||  +++.. +..... +..... +..........  ++++.++.+|+|+
T Consensus         1 m~I~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~~~-~~~~~~-~~~~~~-g~~~~~~~~~~~~~~~~~~~~~D~vi   76 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEIL-KSISAG-REHPRL-GVKLNGVEIFWPEQLEKCLENAEVVL   76 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHH-HHHHTT-CCBTTT-TBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEEccCCHHHH-HHHHHh-CcCccc-CccccceEEecHHhHHHHHhcCCEEE
Confidence            37999999999999999984 56889999999  65432 221110 000000 00000001223  6778889999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCc---cC-CHHHHHHHHHc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP---VI-DEVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~---~v-d~~aL~~aL~~  288 (342)
                      +++|.. .+..++ ++... +++++++|+++.|-   -. ..+.+.+.+.+
T Consensus        77 ~~v~~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           77 LGVSTD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             ECSCGG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             EcCChH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            999943 444443 34445 88999999998775   11 22446666654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.23  E-value=1.6e-06  Score=83.22  Aligned_cols=105  Identities=11%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC-------cEEEEEcCChh-----hHHHHHHhhhhhhhc--cCCCCCccccccCCHH
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLK--ANGEQPVTWKRASSMD  231 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~  231 (342)
                      ++|+|||.|.||..+|..|+ ..|       .+|.+|||++.     .. +.... .+....  .....+.+.....+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~-~~G~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~   98 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVG-TNAKNNYLFENEVRMWIRDEFVNGERMV-DIINN-KHENTKYLKGVPLPHNIVAHSDLA   98 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHH-HHHHHCTTBCSCEEEECCSCC---CCHH-HHHHH-HCBCTTTSTTCBCCTTEEEESSTH
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCccCCCCCeEEEEECChhhhhHHHH-HHHHh-cCcccccCCcccCcCCeEEECCHH
Confidence            47999999999999999985 445       78999999865     22 11111 000000  0000011122345788


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHhHHc----cCCCCcEEEecCCCc
Q 019328          232 EVLREADVISLHPVLDKTTYHLINKERLA----TMKKEAILVNCSRGP  275 (342)
Q Consensus       232 ell~~sDiV~l~lplt~~t~~li~~~~l~----~mk~gailIN~sRG~  275 (342)
                      ++++.||+|++++|. ...+.++ ++...    .+++++++|+++.|-
T Consensus        99 ea~~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A           99 SVINDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             HHHTTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             HHHcCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            889999999999993 4444443 23334    688899999998873

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.19  E-value=6.8e-06  Score=77.24  Aligned_cols=95  Identities=19%  Similarity=0.309  Sum_probs=66.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++++|||.|.||+..++.+...++ -+|.+|||+ +.  +++.+.+...   .+   ...... ++++++++||+|++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a--~~la~~l~~~---~g---~~~~~~-~~~eav~~aDIVi~  189 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-AS--PEILERIGRR---CG---VPARMA-APADIAAQADIVVT  189 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CC--HHHHHHHHHH---HT---SCEEEC-CHHHHHHHCSEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HH--HHHHHHHHHh---cC---CeEEEe-CHHHHHhhCCEEEE
Confidence            36799999999999999998754344 479999999 32  2222221100   01   112234 89999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+|.+   .-++..   +.+|||+.++++|..
T Consensus       190 aT~s~---~pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          190 ATRST---TPLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             CCCCS---SCSSCG---GGCCTTCEEEECCCS
T ss_pred             ccCCC---CcccCH---HHcCCCcEEEECCCC
Confidence            99853   345553   457999999999764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.18  E-value=1.7e-06  Score=76.93  Aligned_cols=93  Identities=22%  Similarity=0.220  Sum_probs=61.1

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -++|||||+|.||+.+|+.| ...|.+|.+ |||+++.. +.....++            .....+..+.++++|+|+++
T Consensus        23 mmkI~IIG~G~mG~~la~~l-~~~g~~V~~v~~r~~~~~-~~l~~~~g------------~~~~~~~~~~~~~aDvVila   88 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERF-TAAQIPAIIANSRGPASL-SSVTDRFG------------ASVKAVELKDALQADVVILA   88 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHH-HHTTCCEEEECTTCGGGG-HHHHHHHT------------TTEEECCHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCCHHHH-HHHHHHhC------------CCcccChHHHHhcCCEEEEe
Confidence            36899999999999999998 467889998 99987642 22222111            01122445568899999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +|. .....++.  .++. .++.++|+++-|-
T Consensus        89 vp~-~~~~~v~~--~l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           89 VPY-DSIADIVT--QVSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             SCG-GGHHHHHT--TCSC-CTTCEEEECCCCB
T ss_pred             CCh-HHHHHHHH--Hhhc-cCCCEEEEcCCCC
Confidence            992 22232221  1122 3588999998654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.17  E-value=1.3e-05  Score=74.77  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=75.6

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.|++++|+|.|.+|+.++..| ...|+ +|.+++|+..+. +++.+.++.      ... ......++.+.+.++|+|
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L-~~~G~~~V~v~nR~~~ka-~~la~~~~~------~~~-~~~~~~~~~~~~~~aDiv  208 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSL-LSTAAERIDMANRTVEKA-ERLVREGDE------RRS-AYFSLAEAETRLAEYDII  208 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECSSHHHH-HHHHHHSCS------SSC-CEECHHHHHHTGGGCSEE
T ss_pred             CCCCCEEEEECcHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHhhh------ccC-ceeeHHHHHhhhccCCEE
Confidence            57899999999999999999998 57898 999999987542 222222110      000 011112566778899999


Q ss_pred             EEcCCCCcccc--c-ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTY--H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~--~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|......  . .+.   .+.++++.++++++-.+ ..+. |.++.++.
T Consensus       209 In~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T~-ll~~A~~~  255 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYNP-LETK-WLKEAKAR  255 (297)
T ss_dssp             EECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCSS-SSCH-HHHHHHHT
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCCC-CCCH-HHHHHHHC
Confidence            99999764311  1 233   34578999999998853 3444 65555543

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.17  E-value=1.3e-05  Score=76.49  Aligned_cols=100  Identities=17%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .++++||||.|.+|+.+++.+....+ -+|.+|||++.+. +.+.+.+..      ..+.......++++++++||+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a-~~la~~~~~------~~g~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANLKE------YSGLTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHTT------CTTCEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHHHh------ccCceEEEeCCHHHHHhcCCEEEE
Confidence            46799999999999999987643344 4899999997642 333332210      001112335689999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+|.. ....++..   +.+++|..+++++..
T Consensus       201 aTps~-~~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          201 VTADK-AYATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             CCCCS-SEEEEECG---GGCCTTCEEEECSCC
T ss_pred             eccCC-CCCceecH---HHcCCCCEEEECCCC
Confidence            99965 23345543   467899999999853

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.16  E-value=4.1e-06  Score=75.30  Aligned_cols=69  Identities=10%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|||||+|.||.++|+.| +..|.+|.+|++.                                ++ ++.||  ++++|
T Consensus         7 mkI~IIG~G~~G~sLA~~L-~~~G~~V~~~~~~--------------------------------~~-~~~aD--ilavP   50 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKL-DSVGHYVTVLHAP--------------------------------ED-IRDFE--LVVID   50 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHH-HHTTCEEEECSSG--------------------------------GG-GGGCS--EEEEC
T ss_pred             cEEEEEeeCHHHHHHHHHH-HHCCCEEEEecCH--------------------------------HH-hccCC--EEEEc
Confidence            5899999999999999998 5679999998862                                11 46789  88899


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .. ....++ .+....+++|+++++++
T Consensus        51 ~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           51 AH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             SS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             HH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            65 555554 45666789999999985

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.15  E-value=3.9e-06  Score=75.30  Aligned_cols=96  Identities=24%  Similarity=0.254  Sum_probs=71.4

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEEEEcC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~l~l  244 (342)
                      +|||||+|.||+.+++.+. .-|+++ .+||++.+.  +                .    .+.++++++ .++|+|++|+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~--~----------------~----~~~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEH--E----------------K----MVRGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCC--T----------------T----EESSHHHHTTSCCSEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcch--h----------------h----hcCCHHHHhcCCCCEEEECC
Confidence            7999999999999999974 678887 688987421  0                0    246899999 6999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCH---HHHHHHHHcCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~---~aL~~aL~~g~  290 (342)
                      |... ..    +.....++.|..+|+.+.+..-+.   +.|.++.++..
T Consensus        59 ~~~~-~~----~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g  102 (236)
T 2dc1_A           59 SQQA-VK----DYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTG  102 (236)
T ss_dssp             CHHH-HH----HHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHC
T ss_pred             CHHH-HH----HHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcC
Confidence            9321 11    223456788999999998887666   56777776543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.12  E-value=6.2e-06  Score=77.78  Aligned_cols=112  Identities=15%  Similarity=0.238  Sum_probs=69.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ..+|||||.|.||..+|..|+ .-|.+|.+|+|++... +...+. +......+.. .......++++ ++.+|+|++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~-~~G~~V~~~~r~~~~~-~~l~~~-g~~~~~~~~~-~~~~~~~~~~~-~~~aDvVil~v   88 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLH-ENGEEVILWARRKEIV-DLINVS-HTSPYVEESK-ITVRATNDLEE-IKKEDILVIAI   88 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSHHHH-HHHHHH-SCBTTBTTCC-CCSEEESCGGG-CCTTEEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHH-HHHHHh-CCcccCCCCe-eeEEEeCCHHH-hcCCCEEEEEC
Confidence            458999999999999999984 6689999999986542 221111 0000000000 01123457778 88999999999


Q ss_pred             CCCcccccccCHhHHccCC-CCcEEEecCCCccCC-HHHHHHHHH
Q 019328          245 VLDKTTYHLINKERLATMK-KEAILVNCSRGPVID-EVALVEHLK  287 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk-~gailIN~sRG~~vd-~~aL~~aL~  287 (342)
                      | +..++.++     ..++ ++.++|+++.|--.+ .+.+.+.+.
T Consensus        89 k-~~~~~~v~-----~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~  127 (335)
T 1z82_A           89 P-VQYIREHL-----LRLPVKPSMVLNLSKGIEIKTGKRVSEIVE  127 (335)
T ss_dssp             C-GGGHHHHH-----TTCSSCCSEEEECCCCCCTTTCCCHHHHHH
T ss_pred             C-HHHHHHHH-----HHhCcCCCEEEEEeCCCCCCccCcHHHHHH
Confidence            9 35554443     3344 789999999773332 233444443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.11  E-value=1.2e-06  Score=73.20  Aligned_cols=103  Identities=11%  Similarity=0.163  Sum_probs=74.1

Q ss_pred             CCEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCCh--hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       165 gktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      -++|+|||.    |.+|..+++.| ...|.+|+.+||..  ...                   .+...+.+++++....|
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L-~~~G~~v~~vnp~~~g~~i-------------------~G~~~~~sl~el~~~~D   72 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYL-LDQGYHVIPVSPKVAGKTL-------------------LGQQGYATLADVPEKVD   72 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHH-HHHTCCEEEECSSSTTSEE-------------------TTEECCSSTTTCSSCCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHH-HHCCCEEEEeCCccccccc-------------------CCeeccCCHHHcCCCCC
Confidence            578999999    89999999997 56788898888865  210                   12234568888888999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      ++++++| .+....++. +..+ ...++++++.+.  .  ++++.+++++..+.-.
T Consensus        73 lvii~vp-~~~v~~v~~-~~~~-~g~~~i~i~~~~--~--~~~l~~~a~~~Gi~~i  121 (145)
T 2duw_A           73 MVDVFRN-SEAAWGVAQ-EAIA-IGAKTLWLQLGV--I--NEQAAVLAREAGLSVV  121 (145)
T ss_dssp             EEECCSC-STHHHHHHH-HHHH-HTCCEEECCTTC--C--CHHHHHHHHTTTCEEE
T ss_pred             EEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCCh--H--HHHHHHHHHHcCCEEE
Confidence            9999999 466666653 3333 566778887642  2  6778888887665433

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.11  E-value=3.9e-06  Score=77.70  Aligned_cols=120  Identities=18%  Similarity=0.195  Sum_probs=72.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCC-CCccccccCCHHHHhh---cCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLR---EADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~---~sDiV~  241 (342)
                      ++|+|||.|.||..+|..| ...|.+|.+|||++... +...+. +........ ..... ...+.+++.+   .+|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIML-HQGGNDVTLIDQWPAHI-EAIRKN-GLIADFNGEEVVANL-PIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHH-CEEEEETTEEEEECC-CEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhC-CEEEEeCCCeeEecc-eeecchhhcccCCCCCEEE
Confidence            4899999999999999998 46788999999987542 221111 100000000 00000 0113334444   899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++|. ..+..++ ++....+++++++|+++.|- -..+.+.+.+.+.++.
T Consensus        80 ~~v~~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           80 ALTKA-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             ECSCH-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             EEecc-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            99993 3444444 34556688999999998753 2345666666554443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.09  E-value=3.8e-06  Score=76.88  Aligned_cols=97  Identities=10%  Similarity=0.069  Sum_probs=64.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cc-cccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TW-KRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~ell~~sDiV~l  242 (342)
                      ++|+|||.|.||..+|..| ...|.+|.+|||++... +.        +...+..+.  .. ....+ .+.++.+|+|++
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~--------l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~   69 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPY-CS--------VNLVETDGSIFNESLTAND-PDFLATSDLLLV   69 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSE-EE--------EEEECTTSCEEEEEEEESC-HHHHHTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCCEEEEEcCccce-ee--------EEEEcCCCceeeeeeeecC-ccccCCCCEEEE
Confidence            3799999999999999998 46789999999986431 10        111110000  00 01233 467789999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ++|.. .+..++ ++....+++++++|++..|-
T Consensus        70 ~v~~~-~~~~v~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           70 TLKAW-QVSDAV-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             CSCGG-GHHHHH-HHHHTTSCTTSCEEEECSSS
T ss_pred             EecHH-hHHHHH-HHHHhhCCCCCEEEEecCCC
Confidence            99954 344444 34556788999999987653

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.00  E-value=1.2e-06  Score=80.55  Aligned_cols=90  Identities=13%  Similarity=0.170  Sum_probs=56.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|||||+|.||+.+|+.|+ .. .+| .+||+++... +...+.+       +     . ...++++++++||+|++++
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~-~~v~~v~~~~~~~~-~~~~~~~-------g-----~-~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLK-DR-YEIGYILSRSIDRA-RNLAEVY-------G-----G-KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC------CCCEECSSHHHH-HHHHHHT-------C-----C-CCCSSCCCCC---CEEECS
T ss_pred             ceEEEEeCCHHHHHHHHHHH-Hc-CcEEEEEeCCHHHH-HHHHHHc-------C-----C-ccCCHHHHHhcCCEEEEeC
Confidence            37999999999999999874 44 788 4899987542 1211111       1     1 2346777888999999999


Q ss_pred             CCCcccccccCHhHHccC-CCCcEEEecCCCccC
Q 019328          245 VLDKTTYHLINKERLATM-KKEAILVNCSRGPVI  277 (342)
Q Consensus       245 plt~~t~~li~~~~l~~m-k~gailIN~sRG~~v  277 (342)
                      |... .     .+.+..+ +++.++||++-+-..
T Consensus        67 ~~~~-~-----~~v~~~l~~~~~ivi~~s~~~~~   94 (276)
T 2i76_A           67 PDRY-I-----KTVANHLNLGDAVLVHCSGFLSS   94 (276)
T ss_dssp             CTTT-H-----HHHHTTTCCSSCCEEECCSSSCG
T ss_pred             ChHH-H-----HHHHHHhccCCCEEEECCCCCcH
Confidence            9542 2     3444444 689999999865433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.99  E-value=3.1e-06  Score=72.59  Aligned_cols=100  Identities=11%  Similarity=0.121  Sum_probs=64.3

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC---HHHH--h
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV--L  234 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el--l  234 (342)
                      .++.+++++|+|+|.+|+.+|+.| +.. |.+|+++|+++..... ..        ..+.... .....+   +.++  +
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L-~~~~g~~V~vid~~~~~~~~-~~--------~~g~~~~-~gd~~~~~~l~~~~~~  103 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDEL-RARYGKISLGIEIREEAAQQ-HR--------SEGRNVI-SGDATDPDFWERILDT  103 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHH-HHHHCSCEEEEESCHHHHHH-HH--------HTTCCEE-ECCTTCHHHHHTBCSC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHH-HhccCCeEEEEECCHHHHHH-HH--------HCCCCEE-EcCCCCHHHHHhccCC
Confidence            457789999999999999999997 677 9999999998764321 11        1111100 001122   3444  6


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .++|+|++++|....+..++  ..++.+.+...+|..+.
T Consensus       104 ~~ad~vi~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          104 GHVKLVLLAMPHHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             CCCCEEEECCSSHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             CCCCEEEEeCCChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence            78999999999654443332  35566676666665433

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.96  E-value=5.7e-05  Score=71.09  Aligned_cols=94  Identities=15%  Similarity=0.219  Sum_probs=66.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..+++||||.|.+|+.+++.++...+ -+|.+|||++.+. +++.+.++.    ..   .... ..++++++ ++|+|++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a-~~la~~~~~----~~---~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSYCED----RG---ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHHH----TT---CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHHHh----cC---ceEE-ECCHHHHh-CCCEEEE
Confidence            46799999999999999998754344 5799999997642 333333221    00   1123 56899999 9999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|..   ..++..   +.+++|..+++++.
T Consensus       194 aTp~~---~pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          194 TTPSR---KPVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             CCCCS---SCCBCG---GGCCTTCEEEECSC
T ss_pred             eeCCC---CceecH---HHcCCCeEEEECCC
Confidence            99953   345543   46789999999963

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.95  E-value=7.7e-05  Score=70.17  Aligned_cols=159  Identities=10%  Similarity=0.079  Sum_probs=100.0

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH---HhhhhhhhccCCCC---Cc-----cccccCCHHHH
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQ---PV-----TWKRASSMDEV  233 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~---~~-----~~~~~~~l~el  233 (342)
                      -.+|+|||.|.||+.+|..++ ..|++|..||++++......   ...+....+.....   ..     ......++++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFA-SGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            468999999999999999975 67999999999876422111   11111111111110   00     01234688999


Q ss_pred             hhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCC
Q 019328          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (342)
Q Consensus       234 l~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~  313 (342)
                      ++.||+|+=++|-+-+.++-+-++.=+.++|+++|-.-+.+  +.-..|.+++.. +=.-.++=.|.+-|     +..+=
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP~~-----~m~LV  156 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNPPY-----YIPLV  156 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSSTT-----TCCEE
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCCcc-----ccchH
Confidence            99999999999988888887777777889999998654444  445677766653 23334443333322     33333


Q ss_pred             ceEEcCCCCCCcHHHHHHH
Q 019328          314 NAIVVPHIASASKWTREGM  332 (342)
Q Consensus       314 nvi~TPHia~~t~~~~~~~  332 (342)
                      -|+-+|+.+-.|.+....+
T Consensus       157 Eiv~g~~Ts~~~~~~~~~~  175 (319)
T 3ado_A          157 ELVPHPETSPATVDRTHAL  175 (319)
T ss_dssp             EEEECTTCCHHHHHHHHHH
T ss_pred             HhcCCCCCcHHHHHHHHHH
Confidence            3777887765554444333

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.95  E-value=3.6e-05  Score=64.16  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhc-cCCCCCccccccCC---HHHH-h
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASS---MDEV-L  234 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---l~el-l  234 (342)
                      .....+++|.|+|+|.+|+.+|+.| +..|.+|+++|+++.....         ++ ..+.... .....+   +.+. +
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L-~~~g~~V~vid~~~~~~~~---------~~~~~g~~~~-~~d~~~~~~l~~~~~   82 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLA-SSSGHSVVVVDKNEYAFHR---------LNSEFSGFTV-VGDAAEFETLKECGM   82 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGGGG---------SCTTCCSEEE-ESCTTSHHHHHTTTG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHHH---------HHhcCCCcEE-EecCCCHHHHHHcCc
Confidence            3567889999999999999999997 6789999999998654211         11 0111000 001112   2232 6


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ..+|+|++++|....+.  .-....+.+.+...+|-..++.
T Consensus        83 ~~ad~Vi~~~~~~~~~~--~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           83 EKADMVFAFTNDDSTNF--FISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGCSEEEECSSCHHHHH--HHHHHHHHTSCCSEEEEECSSG
T ss_pred             ccCCEEEEEeCCcHHHH--HHHHHHHHHCCCCeEEEEECCH
Confidence            78999999999533222  2233444455566666665555

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.94  E-value=8.2e-06  Score=75.77  Aligned_cols=117  Identities=15%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcC-----C-cEEEEEcCChhhHHHHHHhhhhhhhccC-CC-CCccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGF-----K-MNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~-----g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~ell~~s  237 (342)
                      ++|+|||.|.||..+|..|+ ..     | .+|.+|+| .. ..+.+.+..+...... +. .........+ .+.+..+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~-~~~~~~~g~~~V~~~~r-~~-~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~   84 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLA-LRAAATDGLLEVSWIAR-GA-HLEAIRAAGGLRVVTPSRDFLARPTCVTDN-PAEVGTV   84 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHHHHTTSSEEEEEECC-HH-HHHHHHHHTSEEEECSSCEEEECCSEEESC-HHHHCCE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCccccCCCCCEEEEEc-HH-HHHHHHhcCCeEEEeCCCCeEEecceEecC-ccccCCC
Confidence            48999999999999999985 44     7 89999998 43 2232221011111100 00 0000001123 3457889


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH-HHHHHHHHcCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE-VALVEHLKQNP  290 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~  290 (342)
                      |+|++++|... +...+ ++....+++++++|.+.-|  ++. +.|.+.+.+.+
T Consensus        85 D~vil~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           85 DYILFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EEEEECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTT
T ss_pred             CEEEEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCc
Confidence            99999999543 44433 3344456788999998776  343 55656564433

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.93  E-value=1.9e-05  Score=72.56  Aligned_cols=106  Identities=16%  Similarity=0.047  Sum_probs=72.8

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      |+++.|+|.|.+|+.++..| ...|.+|.+++|+.++. ++.. .++          ...   .+++++ .++|+|+.++
T Consensus       118 ~k~vlvlGaGGaaraia~~L-~~~G~~v~V~nRt~~ka-~~la-~~~----------~~~---~~~~~l-~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL-KKQGLQVSVLNRSSRGL-DFFQ-RLG----------CDC---FMEPPK-SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCTTH-HHHH-HHT----------CEE---ESSCCS-SCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH-HCC----------CeE---ecHHHh-ccCCEEEEcc
Confidence            89999999999999999998 57889999999997643 2221 111          011   122332 3899999999


Q ss_pred             CCCcccccccCHhHHc-cCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          245 VLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       245 plt~~t~~li~~~~l~-~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      |..-.....++.+.+. .++++.+++++.-.+  .+.-|.+|-+.|
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P--~T~ll~~A~~~G  224 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGKLAYDLAYGF--LTPFLSLAKELK  224 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS--CCHHHHHHHHTT
T ss_pred             cCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC--chHHHHHHHHCc
Confidence            9764433346665333 577899999999876  555444555554

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.91  E-value=3.8e-05  Score=62.03  Aligned_cols=95  Identities=12%  Similarity=0.188  Sum_probs=57.9

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV  240 (342)
                      +++++|+|+|.+|+.+|+.| ...|.+|.++|+++... +.....++       .... .....+.+.+    +.++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~~~~-------~~~~-~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEID-------ALVI-NGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHCS-------SEEE-ESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHhcC-------cEEE-EcCCCCHHHHHHcCcccCCEE
Confidence            46899999999999999998 57799999999986542 22111111       0000 0011122222    5789999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      ++++|....  +..-....+.++++.+++-+
T Consensus        74 i~~~~~~~~--~~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           74 IAVTGKEEV--NLMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             EECCSCHHH--HHHHHHHHHHTTCCCEEEEC
T ss_pred             EEeeCCchH--HHHHHHHHHHcCCCEEEEEe
Confidence            999985432  22223445567777666644

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.87  E-value=1.8e-05  Score=76.32  Aligned_cols=83  Identities=28%  Similarity=0.445  Sum_probs=68.9

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ...+|-|||. |..|+..++.+ +++|+   .|..+|++...+               +         ..++ .+.++|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a-~~lGa~~~~V~v~D~~~~~~---------------g---------~~~~-~i~~aDi  266 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLL-HKVGIPDANILKWDIKETSR---------------G---------GPFD-EIPQADI  266 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHH-HHTTCCGGGEEEECHHHHTT---------------C---------SCCT-HHHHSSE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHH-HhCCCCcCceEEeecccccc---------------C---------Cchh-hHhhCCE
Confidence            4668999999 99999999996 89998   899999865221               0         0123 3568999


Q ss_pred             EEEcCCCCcccccccCHhHHccC-CCCcEEEecC
Q 019328          240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~m-k~gailIN~s  272 (342)
                      |+.++......-.+|.++.++.| |||+++|++|
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            99999987778899999999999 9999999996

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.86  E-value=8.1e-05  Score=71.44  Aligned_cols=103  Identities=14%  Similarity=0.226  Sum_probs=76.4

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC----hhhH---HHHHHhhhhhhhccCCCCCccccccCCHH
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY----QATR---LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      |..+.+.+|.|+|.|..|..+|+.| .+.|. +|+.+|++    ....   ...+...|..   ...  .  .....+|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll-~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~---~~~--~--~~~~~~L~  258 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAR---ITN--P--ERLSGDLE  258 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHH---TSC--T--TCCCSCHH
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHH-HhCCCCeEEEEECCCcccCCCcccccCHHHHHHHH---hhh--c--cCchhhHH
Confidence            3578899999999999999999997 68898 89999998    3221   1111122211   101  0  11246899


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       232 ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ++++.+|+++-+.-     -++|.++.++.|+++++++.+|+-.
T Consensus       259 eav~~ADVlIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          259 TALEGADFFIGVSR-----GNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             HHHTTCSEEEECSC-----SSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             HHHccCCEEEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCC
Confidence            99999999887731     3899999999999999999999754

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.82  E-value=5e-05  Score=73.79  Aligned_cols=99  Identities=18%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh-H-HHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      -|+||||+|||||.-|++=|..| +-.|.+|++--|.... + ...+..     ...     .++ ...+.+|++++||+
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNL-RDSGv~V~Vglr~~s~~e~~~S~~~-----A~~-----~Gf-~v~~~~eA~~~ADv  101 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK-----ATE-----NGF-KVGTYEELIPQADL  101 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHH-HHTTCEEEEEECHHHHHTTCHHHHH-----HHH-----TTC-EEEEHHHHGGGCSE
T ss_pred             HHcCCEEEEeCCChHhHHHHhHH-HhcCCcEEEEeCCCCcccccchHHH-----HHH-----CCC-EecCHHHHHHhCCE
Confidence            48999999999999999999998 6889998865442210 0 000000     000     112 23579999999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |.+.+|...+ ..++ ++....||+|+.|. .|.|=
T Consensus       102 V~~L~PD~~q-~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          102 VINLTPDKQH-SDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             EEECSCGGGH-HHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             EEEeCChhhH-HHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            9999995433 2334 56889999999987 66665

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.80  E-value=6.9e-05  Score=70.20  Aligned_cols=120  Identities=17%  Similarity=0.119  Sum_probs=75.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc--CCCCCc-cccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~ell~~sDiV~l  242 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|..|+|+..   +.... .+-....  .+.... ......+++++.+.+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~---~~i~~-~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLA-KTGHCVSVVSRSDY---ETVKA-KGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HTTCEEEEECSTTH---HHHHH-HCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCChH---HHHHh-CCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            58999999999999999984 56899999999753   11111 1100110  010000 01123567777668999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      ++|... +...+ +.....+++++++|.+.-|= -.++.|.+.+...++.+
T Consensus        78 avK~~~-~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl~  125 (320)
T 3i83_A           78 CIKVVE-GADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVIS  125 (320)
T ss_dssp             CCCCCT-TCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEEE
T ss_pred             ecCCCC-hHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEEE
Confidence            999543 44332 34445678899999887763 23467777776555443

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.76  E-value=6.5e-05  Score=69.41  Aligned_cols=113  Identities=17%  Similarity=0.139  Sum_probs=73.6

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+.++. ++..+.++.    ..  .   ....+++++.+++|+|
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a-~~la~~~~~----~~--~---~~~~~~~~l~~~aDiI  191 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPL-LDQQPASITVTNRTFAKA-EQLAELVAA----YG--E---VKAQAFEQLKQSYDVI  191 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTCCSEEEEEESSHHHH-HHHHHHHGG----GS--C---EEEEEGGGCCSCEEEE
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HhcCCCeEEEEECCHHHH-HHHHHHhhc----cC--C---eeEeeHHHhcCCCCEE
Confidence            68899999999999999999998 57896 999999987542 222222211    00  0   1122455555889999


Q ss_pred             EEcCCCCcccc-cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~-~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|..-... -.+..   +.++++.+++++.-.+ ..+.-|.+|-+.|
T Consensus       192 InaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  237 (281)
T 3o8q_A          192 INSTSASLDGELPAIDP---VIFSSRSVCYDMMYGK-GYTVFNQWARQHG  237 (281)
T ss_dssp             EECSCCCC----CSCCG---GGEEEEEEEEESCCCS-SCCHHHHHHHHTT
T ss_pred             EEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCCC-ccCHHHHHHHHCC
Confidence            99999764322 12333   3467899999997654 4455444444444

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.75  E-value=3.2e-05  Score=72.97  Aligned_cols=123  Identities=12%  Similarity=0.119  Sum_probs=75.4

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .++|+|||.|.||..+|..|+ ..|.+|.+|+|..  ..+... ..+......+ ..........++++ ++.+|+|+++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~-~~g~~V~~~~r~~--~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLA-LAGEAINVLARGA--TLQALQ-TAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHH-HTTCCEEEECCHH--HHHHHH-HTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCEEEEEEChH--HHHHHH-HCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            368999999999999999984 6688999999852  222211 1111110000 00001112346776 4889999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCc------------------cCCHHHHHHHHHcCCccEE
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP------------------VIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~------------------~vd~~aL~~aL~~g~i~ga  294 (342)
                      +|. .+++..+ ++....+++++++|.+.-|=                  +=.++.+.+.+...++.++
T Consensus        78 vk~-~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~g  144 (335)
T 3ghy_A           78 VKA-PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGC  144 (335)
T ss_dssp             CCH-HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEE
T ss_pred             CCc-hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEE
Confidence            994 4454433 23344578899999998882                  2234567777765555433

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.75  E-value=0.00029  Score=64.46  Aligned_cols=113  Identities=15%  Similarity=0.107  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV  240 (342)
                      ++.|+++.|+|.|.+|+.+|+.| ...|.+|++++|+.++. ++..+.++.    ..  ..   ...+++++. .++|+|
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L-~~~G~~V~v~~R~~~~~-~~la~~~~~----~~--~~---~~~~~~~~~~~~~Div  184 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLFAH----TG--SI---QALSMDELEGHEFDLI  184 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHTGG----GS--SE---EECCSGGGTTCCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHHHhhc----cC--Ce---eEecHHHhccCCCCEE
Confidence            57799999999999999999998 57889999999987542 222222211    00  00   112333443 589999


Q ss_pred             EEcCCCCcccc-cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~-~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|...... .-+..+   .++++.+++|+.-.. ..+.-+.++-+.|
T Consensus       185 Vn~t~~~~~~~~~~i~~~---~l~~~~~v~D~~y~p-~~t~~~~~a~~~G  230 (271)
T 1nyt_A          185 INATSSGISGDIPAIPSS---LIHPGIYCYDMFYQK-GKTPFLAWCEQRG  230 (271)
T ss_dssp             EECCSCGGGTCCCCCCGG---GCCTTCEEEESCCCS-SCCHHHHHHHHTT
T ss_pred             EECCCCCCCCCCCCCCHH---HcCCCCEEEEeccCC-cCCHHHHHHHHcC
Confidence            99999654310 013322   357899999998765 3334344444444

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.74  E-value=0.00014  Score=67.84  Aligned_cols=121  Identities=12%  Similarity=0.119  Sum_probs=74.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccC-CCCCc-cccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV-TWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|..|+|+..   +... ..+...... +.... ......+.++ ++.+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~---~~i~-~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQ-RSGEDVHFLLRRDY---EAIA-GNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHH-HTSCCEEEECSTTH---HHHH-HTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEEcCcH---HHHH-hCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            57999999999999999984 56889999999752   2211 111111110 00000 0111245555 5789999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEE
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaa  295 (342)
                      +|.. +++..+ ++.-..+++++++|.+.-|= -.++.|.+.+...++.++.
T Consensus        77 vk~~-~~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~~~  125 (312)
T 3hn2_A           77 LKTF-ANSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIGGV  125 (312)
T ss_dssp             CCGG-GGGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEEEE
T ss_pred             cCCC-CcHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEE
Confidence            9943 334332 34445678899999988772 2256677777665655543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.73  E-value=7.2e-05  Score=70.07  Aligned_cols=117  Identities=18%  Similarity=0.265  Sum_probs=69.4

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      -..++|+|||.|.||..+|..|+ ..|.+|..| ++++. .+...+ .+......+ ..........++++ ++.+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~-~~G~~V~l~-~~~~~-~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLA-RAGHEVILI-ARPQH-VQAIEA-TGLRLETQSFDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHH-HTTCEEEEE-CCHHH-HHHHHH-HCEEEECSSCEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHH-HCCCeEEEE-EcHhH-HHHHHh-CCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEE
Confidence            45678999999999999999984 678999999 66543 222111 111011000 00001111245554 58899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                      +++|.. +++..+ ++....+++++++|.+.-|=- .++.+.+.+.
T Consensus        92 lavk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~~  134 (318)
T 3hwr_A           92 FCVKST-DTQSAA-LAMKPALAKSALVLSLQNGVE-NADTLRSLLE  134 (318)
T ss_dssp             ECCCGG-GHHHHH-HHHTTTSCTTCEEEEECSSSS-HHHHHHHHCC
T ss_pred             EEcccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHcC
Confidence            999954 454443 334456788999999877732 2345666664

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.73  E-value=7.8e-05  Score=68.38  Aligned_cols=114  Identities=14%  Similarity=0.133  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sDiV  240 (342)
                      ++.|+++.|+|.|.+|+.++..| ...|.+|.+++|+.++. +++.+.++..    .  ..   ...+++++.+ ++|+|
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L-~~~G~~v~v~~R~~~~a-~~l~~~~~~~----~--~~---~~~~~~~~~~~~~Div  184 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPL-LQAQQNIVLANRTFSKT-KELAERFQPY----G--NI---QAVSMDSIPLQTYDLV  184 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHH-HHTTCEEEEEESSHHHH-HHHHHHHGGG----S--CE---EEEEGGGCCCSCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHHcccc----C--Ce---EEeeHHHhccCCCCEE
Confidence            57889999999999999999998 47789999999987542 2222222110    0  00   0123344433 89999


Q ss_pred             EEcCCCCccccc-ccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|......- -+..+.   ++++.+++++.-.+..++.-+.+|-+.|
T Consensus       185 In~t~~~~~~~~~~i~~~~---l~~~~~v~D~~y~p~~~t~ll~~a~~~G  231 (272)
T 1p77_A          185 INATSAGLSGGTASVDAEI---LKLGSAFYDMQYAKGTDTPFIALCKSLG  231 (272)
T ss_dssp             EECCCC-------CCCHHH---HHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             EECCCCCCCCCCCCCCHHH---cCCCCEEEEeeCCCCcCCHHHHHHHHcC
Confidence            999996543110 133333   3578888888876655455454444444

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.72  E-value=5e-05  Score=62.29  Aligned_cols=94  Identities=14%  Similarity=0.120  Sum_probs=59.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH---HHH-hhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~sDiV  240 (342)
                      ..++.|+|+|.+|+.+|+.| +..|.+|+++|+++..... ..        ..+.... .....+.   .++ +.++|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~~~-~~--------~~g~~~i-~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKL-LASDIPLVVIETSRTRVDE-LR--------ERGVRAV-LGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHHHH-HH--------HTTCEEE-ESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHH-HHCCCCEEEEECCHHHHHH-HH--------HcCCCEE-ECCCCCHHHHHhcCcccCCEE
Confidence            35799999999999999998 6889999999998764321 11        1111100 0011222   221 4689999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      ++++|...++..+  ...++.+.++..+|-.
T Consensus        76 i~~~~~~~~n~~~--~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           76 ILTIPNGYEAGEI--VASARAKNPDIEIIAR  104 (140)
T ss_dssp             EECCSCHHHHHHH--HHHHHHHCSSSEEEEE
T ss_pred             EEECCChHHHHHH--HHHHHHHCCCCeEEEE
Confidence            9999966555433  2345556666666643

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.71  E-value=0.00011  Score=68.12  Aligned_cols=109  Identities=19%  Similarity=0.307  Sum_probs=67.4

Q ss_pred             CCEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      -.++||||+|.||+. .++.+.+.-+.++. ++|+++... +.+.+.++            ...+.++++++++.|+|++
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~~------------~~~~~~~~~ll~~~D~V~i   72 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKR-EKICSDYR------------IMPFDSIESLAKKCDCIFL   72 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHH-HHHHHHHT------------CCBCSCHHHHHTTCSEEEE
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHcC------------CCCcCCHHHHHhcCCEEEE
Confidence            368999999999996 88876433577877 689987642 22222222            1125799999999999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCc-EEEe-cCCCccCCHHHHHHHHHcCCc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~ga-ilIN-~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      ++|..  ...-+   ....++.|. +|+. -.--.+-+.+.|.++.++..+
T Consensus        73 ~tp~~--~h~~~---~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           73 HSSTE--THYEI---IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             CCCGG--GHHHH---HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             eCCcH--hHHHH---HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            99933  22212   222333443 4443 223333455667777766443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.69  E-value=4.7e-05  Score=59.54  Aligned_cols=96  Identities=18%  Similarity=0.129  Sum_probs=58.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+++++|+|.|.||+.+++.| ...| .+|+++++++..... .. ..+...     .........++.++++++|+|+.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~~~-~~-~~~~~~-----~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALL-KTSSNYSVTVADHDLAALAV-LN-RMGVAT-----KQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHH-HHCSSEEEEEEESCHHHHHH-HH-TTTCEE-----EECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCHHHHHH-HH-hCCCcE-----EEecCCCHHHHHHHHcCCCEEEE
Confidence            467999999999999999997 5778 899999998754221 11 000000     00001112346677889999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +.|... +..++    -...+.|...++.+
T Consensus        76 ~~~~~~-~~~~~----~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           76 AAPFFL-TPIIA----KAAKAAGAHYFDLT  100 (118)
T ss_dssp             CSCGGG-HHHHH----HHHHHTTCEEECCC
T ss_pred             CCCchh-hHHHH----HHHHHhCCCEEEec
Confidence            998332 11111    11124566667664

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.65  E-value=0.00011  Score=70.83  Aligned_cols=103  Identities=12%  Similarity=0.007  Sum_probs=61.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEc---CChhhHHHHHHhhhhhhhc--cCCC--CC--ccc-cccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD---LYQATRLEKFVTAYGQFLK--ANGE--QP--VTW-KRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d---~~~~~~~~~~~~~~~~~~~--~~~~--~~--~~~-~~~~~l~ell~  235 (342)
                      ++|+|||.|.||..+|..|++.-|.+|.+|+   +++... +......+..+.  ..+.  ..  ... ....+++++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERW-TKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHH-HHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHH-HHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            4899999999999999997422489999999   543321 111111000000  0000  00  001 12357888899


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      .||+|++++|.. ..+.++ ++....+++++++++.
T Consensus        82 ~aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999943 333332 3344557889999984

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.63  E-value=0.00027  Score=69.32  Aligned_cols=149  Identities=13%  Similarity=0.089  Sum_probs=85.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhccCCCCCccccccCCHHHHhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~  235 (342)
                      +-++|+|||+|-+|..+|..++ ..|.+|+++|.++++- +....+..        +.++..... -......+.++.++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A-~~G~~V~g~Did~~kV-~~ln~G~~pi~Epgl~ell~~~~~~-g~l~~tt~~~~ai~   96 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFA-LLGHRVVGYDVNPSIV-ERLRAGRPHIYEPGLEEALGRALSS-GRLSFAESAEEAVA   96 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHHHT-TCEEECSSHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHCCCCCCCCCCHHHHHHHHHHc-CCeeEEcCHHHHHh
Confidence            4579999999999999999884 5799999999987542 11111000        000000000 00122457889999


Q ss_pred             cCCEEEEcCCCCcccc-cccC--------HhHHccCC---CCcEEEecCCCccCCHHHHH-HHHHcCCccEEEee-cCCC
Q 019328          236 EADVISLHPVLDKTTY-HLIN--------KERLATMK---KEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-VFED  301 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~-~li~--------~~~l~~mk---~gailIN~sRG~~vd~~aL~-~aL~~g~i~gaalD-V~~~  301 (342)
                      .||++++|+| ||... +-.|        +..-+.|+   +|.++|.-|+-.+=-.+.+. ..|++. -.+.-++ +|.+
T Consensus        97 ~ad~~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~-~~~~~f~v~~~P  174 (444)
T 3vtf_A           97 ATDATFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEE-AGGVKFSVASNP  174 (444)
T ss_dssp             TSSEEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTT-TTTCCCEEEECC
T ss_pred             cCCceEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHh-CCCCCceeecCc
Confidence            9999999998 44322 1111        12223343   68899999987775555544 344432 2222222 2456


Q ss_pred             CCCCC-C---CccCCCceEE
Q 019328          302 EPYMK-P---GLSEMKNAIV  317 (342)
Q Consensus       302 EP~~~-~---~L~~~~nvi~  317 (342)
                      |-+.+ .   .+.+.++|++
T Consensus       175 Erl~eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          175 EFLREGSALEDFFKPDRIVI  194 (444)
T ss_dssp             CCCCTTSHHHHHHSCSCEEE
T ss_pred             ccccCCccccccccCCcEEE
Confidence            65432 2   4666677763

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.58  E-value=0.00026  Score=66.36  Aligned_cols=67  Identities=24%  Similarity=0.417  Sum_probs=49.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|+++... +.+.+.+            +.. +.+++++++  +.|+|++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~------------~~~-~~~~~~~l~~~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAA-EAIAGAY------------GCE-VRTIDAIEAAADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT------------TCE-ECCHHHHHHCTTCCEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHH-HHHHHHh------------CCC-cCCHHHHhcCCCCCEEEE
Confidence            4899999999999999987433478877 689987542 2222222            112 579999998  8999999


Q ss_pred             cCCC
Q 019328          243 HPVL  246 (342)
Q Consensus       243 ~lpl  246 (342)
                      ++|.
T Consensus        70 ~tp~   73 (331)
T 4hkt_A           70 CTPT   73 (331)
T ss_dssp             CSCG
T ss_pred             eCCc
Confidence            9994

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.57  E-value=0.00047  Score=63.69  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=75.9

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.||++.|+|.|.+|+.++..| ...|+ +|.+++|+.++. ++..+.+....   ...........++++.++++|+|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~~~~---~~~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINNAV---GREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSHHHH-HHHHHHHHHHH---TSCCEEEECSTTHHHHHHHSSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEECCHHHH-HHHHHHHHhhc---CCceEEEcCHHHHHHHHhcCCEE
Confidence            57899999999999999999998 57898 799999997642 22222221100   00011111234788889999999


Q ss_pred             EEcCCCCcccc--cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLDKTTY--HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt~~t~--~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.+.|..-...  -.+.   .+.++++.+++++.=.+ ..+.-|.+|-+.|
T Consensus       199 InaTp~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P-~~T~ll~~A~~~G  245 (283)
T 3jyo_A          199 VNATPMGMPAHPGTAFD---VSCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_dssp             EECSSTTSTTSCSCSSC---GGGCCTTCEEEECCCSS-SSCHHHHHHHHHT
T ss_pred             EECCCCCCCCCCCCCCC---HHHhCCCCEEEEecCCC-CCCHHHHHHHHCc
Confidence            99999642211  1233   34467888888886543 3455555555555

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.57  E-value=0.00016  Score=58.37  Aligned_cols=100  Identities=11%  Similarity=0.149  Sum_probs=58.6

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH---HHH-hhcCC
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREAD  238 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~sD  238 (342)
                      +.++++.|+|+|.+|+.+++.| ...|.+|+++|+++.... .        +...+.. .......+.   +++ +.++|
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l-~~~g~~v~~~d~~~~~~~-~--------~~~~~~~-~~~~d~~~~~~l~~~~~~~~d   72 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKVN-A--------YASYATH-AVIANATEENELLSLGIRNFE   72 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHHH-T--------TTTTCSE-EEECCTTCHHHHHTTTGGGCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHhCCE-EEEeCCCCHHHHHhcCCCCCC
Confidence            5678899999999999999997 578999999999765321 1        0111110 000011222   232 57899


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +|+.++|...++ ++.-....+.+.+. .+|-.+.+.
T Consensus        73 ~vi~~~~~~~~~-~~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           73 YVIVAIGANIQA-STLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             EEEECCCSCHHH-HHHHHHHHHHTTCS-EEEEECCSH
T ss_pred             EEEECCCCchHH-HHHHHHHHHHcCCC-eEEEEeCCH
Confidence            999999854222 22223344556666 455444443

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.55  E-value=0.00016  Score=59.65  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=69.7

Q ss_pred             CCCEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +-++|+|||.    |++|..+++.| +..|.+|+..+|.....               ..  .+...+.+++++-...|+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l-~~~G~~v~~vnp~~~~~---------------~i--~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE---------------EL--FGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS---------------EE--TTEECBSSGGGCCSCCSE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHH-HHCCCEEEEeCCCcccC---------------cC--CCEEecCCHHHCCCCCCE
Confidence            3568999999    89999999997 67888877666641010               00  122345688998889999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++++|. +....++. +..+ ...++++++.+..    ++.+.+..++..+.
T Consensus        74 avi~vp~-~~~~~v~~-~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           74 LDVFRPP-SALMDHLP-EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             EEECSCH-HHHTTTHH-HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             EEEEeCH-HHHHHHHH-HHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            9999995 55566553 3333 3334676664432    57777777766554

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.54  E-value=0.00061  Score=62.57  Aligned_cols=113  Identities=12%  Similarity=0.029  Sum_probs=72.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READ  238 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sD  238 (342)
                      .++.||++.|+|.|.+|+.++..| ...|+ +|.+++|+.++. ++..+.+..       ....   ..+++++- .++|
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~~-------~~~~---~~~~~~l~~~~~D  183 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPF-LQAGPSELVIANRDMAKA-LALRNELDH-------SRLR---ISRYEALEGQSFD  183 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHHCC-------TTEE---EECSGGGTTCCCS
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhcc-------CCee---EeeHHHhcccCCC
Confidence            368899999999999999999998 57896 999999987642 222222210       0011   12333433 7899


Q ss_pred             EEEEcCCCCcccc-cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          239 VISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       239 iV~l~lplt~~t~-~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +|+.++|..-... -.+..   +.++++.+++++.=.+ ..+.-|.+|-+.|
T Consensus       184 ivInaTp~gm~~~~~~i~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  231 (272)
T 3pwz_A          184 IVVNATSASLTADLPPLPA---DVLGEAALAYELAYGK-GLTPFLRLAREQG  231 (272)
T ss_dssp             EEEECSSGGGGTCCCCCCG---GGGTTCSEEEESSCSC-CSCHHHHHHHHHS
T ss_pred             EEEECCCCCCCCCCCCCCH---HHhCcCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            9999999643211 12333   3457889999986653 3455444555544

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.52  E-value=0.00034  Score=64.85  Aligned_cols=78  Identities=22%  Similarity=0.285  Sum_probs=63.2

Q ss_pred             cccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .++.||++.|||-++| |+++|..| ..-++.|..+..+                            ..++.+..++||+
T Consensus       175 i~l~Gk~vvViGRS~iVGkPla~LL-~~~~ATVTi~Hs~----------------------------T~dl~~~~~~ADI  225 (303)
T 4b4u_A          175 IEIAGKHAVVVGRSAILGKPMAMML-LQANATVTICHSR----------------------------TQNLPELVKQADI  225 (303)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTT----------------------------CSSHHHHHHTCSE
T ss_pred             CCCCCCEEEEEeccccccchHHHHH-HhcCCEEEEecCC----------------------------CCCHHHHhhcCCe
Confidence            5899999999998665 99999997 5779999876532                            2478899999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+.++.-    .++|..+.   .|+|+++||+|--
T Consensus       226 vV~A~G~----p~~i~~d~---vk~GavVIDVGin  253 (303)
T 4b4u_A          226 IVGAVGK----AELIQKDW---IKQGAVVVDAGFH  253 (303)
T ss_dssp             EEECSCS----TTCBCGGG---SCTTCEEEECCCB
T ss_pred             EEeccCC----CCcccccc---ccCCCEEEEecee
Confidence            9999763    35677665   5899999999853

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.50  E-value=0.00014  Score=59.19  Aligned_cols=93  Identities=14%  Similarity=0.098  Sum_probs=55.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV  239 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDi  239 (342)
                      .++++.|+|+|.+|+.+|+.| ...|.+|+++|+++..... ...        .+.... .....+.+.+    +.++|+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L-~~~g~~V~~id~~~~~~~~-~~~--------~~~~~~-~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVREL-TAAGKKVLAVDKSKEKIEL-LED--------EGFDAV-IADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHHHH-HHH--------TTCEEE-ECCTTCHHHHHHSCCTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHHHH-HHH--------CCCcEE-ECCCCCHHHHHhCCcccCCE
Confidence            457899999999999999998 5789999999998754221 111        111000 0011222222    467999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEE
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailI  269 (342)
                      |++++|..  ..++.-....+.+....++.
T Consensus        74 vi~~~~~~--~~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           74 VLITGSDD--EFNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             EEECCSCH--HHHHHHHHHHHHHCCCCEEE
T ss_pred             EEEecCCH--HHHHHHHHHHHHhCCceEEE
Confidence            99999932  23333334444444333444

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.47  E-value=0.0005  Score=64.46  Aligned_cols=120  Identities=13%  Similarity=0.095  Sum_probs=73.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHHHHhhhhhhhccCCCCCccccccC---CHHHH
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV  233 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el  233 (342)
                      .++.||++.|+|.|.+|+.++..| ...|+ +|.+++|+   ..+ .++..+.+...   .+ .........   ++.+.
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~-a~~la~~~~~~---~~-~~~~~~~~~~~~~l~~~  223 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQA-ALDGVKEISIFNRKDDFYAN-AEKTVEKINSK---TD-CKAQLFDIEDHEQLRKE  223 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHH-HHHHHHHHHHH---SS-CEEEEEETTCHHHHHHH
T ss_pred             CCccCCEEEEECCChHHHHHHHHH-HHCCCCEEEEEECCCchHHH-HHHHHHHhhhh---cC-CceEEeccchHHHHHhh
Confidence            368899999999999999999998 57898 89999998   432 22222222110   00 001111122   35567


Q ss_pred             hhcCCEEEEcCCCCc--cc-ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          234 LREADVISLHPVLDK--TT-YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       234 l~~sDiV~l~lplt~--~t-~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ++++|+|+.+.|..-  .+ ...+.  ....++++.+++++.=.+ ..+.-|.+|-+.|
T Consensus       224 l~~aDiIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  279 (315)
T 3tnl_A          224 IAESVIFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP-TKTRLLEIAEEQG  279 (315)
T ss_dssp             HHTCSEEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS-SSCHHHHHHHHTT
T ss_pred             hcCCCEEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC-CCCHHHHHHHHCC
Confidence            889999999999542  11 11121  233467888888886544 3444455555544

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.43  E-value=0.0004  Score=64.82  Aligned_cols=124  Identities=16%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|.+|..+|..|++. +|.+|..||++.+... .............. .........++++ ++.||+|++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~-~~~~~l~~~~~~~~-~~~~i~~t~d~~~-l~~aDvViiav   77 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ-GKALDMYESGPVGL-FDTKVTGSNDYAD-TANSDIVIITA   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH-HHHHHHHTTHHHHT-CCCEEEEESCGGG-GTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHH-HHHHhHHhhhhccc-CCcEEEECCCHHH-HCCCCEEEEeC
Confidence            3799999999999999987643 6889999999865321 11111100000000 0111122256766 89999999999


Q ss_pred             CCCcccccc-------cC----Hh---HHccCCCCcEEEecCCCccCCHH--HHHHH--HHcCCccEEE
Q 019328          245 VLDKTTYHL-------IN----KE---RLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRVG  295 (342)
Q Consensus       245 plt~~t~~l-------i~----~~---~l~~mk~gailIN~sRG~~vd~~--aL~~a--L~~g~i~gaa  295 (342)
                      |. |...+.       .|    ++   .+....|++++++++-  .+|.-  .+.+.  +...++.|.+
T Consensus        78 ~~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN--P~~~~~~~~~~~~~~~~~rviG~g  143 (310)
T 1guz_A           78 GL-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGMA  143 (310)
T ss_dssp             SC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEEC
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--chHHHHHHHHHhcCCChHHEEECC
Confidence            84 332222       11    11   2222357889999854  33332  22222  3344666664

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.41  E-value=0.00036  Score=62.21  Aligned_cols=97  Identities=21%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .-++.|++|.|||.|.+|...++.| ...|++|.++++...+....+.+.        +.  ..+....--++.+..+|+
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~~--------~~--i~~i~~~~~~~dL~~adL   94 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEAK--------GQ--LRVKRKKVGEEDLLNVFF   94 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHHT--------TS--CEEECSCCCGGGSSSCSE
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHc--------CC--cEEEECCCCHhHhCCCCE
Confidence            4589999999999999999999998 588999999999876544333221        11  111111111345678999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+.+....+     +|.......+ -.++||+..
T Consensus        95 VIaAT~d~~-----~N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A           95 IVVATNDQA-----VNKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             EEECCCCTH-----HHHHHHHHSC-TTCEEEC--
T ss_pred             EEECCCCHH-----HHHHHHHHHh-CCCEEEEeC
Confidence            988765333     3444444455 557788743

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.41  E-value=0.00052  Score=63.92  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|||||+|.||+. +++.+.+.-++++. ++|+++... +.+.+.++            ...+.+++++..++|+|+++
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~~~~~g------------~~~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESWR------------IPYADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHHT------------CCBCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHcC------------CCccCcHHHhhcCCCEEEEe
Confidence            48999999999997 88876433478876 889887542 22222221            11246777776789999999


Q ss_pred             CCCCcccccccCHhHHccCCCCc-EEEec-CCCccCCHHHHHHHHHcCCccE
Q 019328          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~ga-ilIN~-sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      +|...  ..   +-....++.|. +++.- .--.+-+.+.|.++.++..+.-
T Consensus        73 tp~~~--h~---~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~  119 (319)
T 1tlt_A           73 SSTAS--HF---DVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  119 (319)
T ss_dssp             SCTTH--HH---HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCchh--HH---HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            99432  21   22233455565 55542 2233445567888877765543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.41  E-value=0.00034  Score=57.96  Aligned_cols=102  Identities=9%  Similarity=0.092  Sum_probs=69.3

Q ss_pred             CCEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      -++|+|||.    |.+|..+++.| +..|.+|+..+|....                 .  .+...+.+++++....|++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l-~~~G~~v~~Vnp~~~~-----------------i--~G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-----------------V--LGRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-----------------E--TTEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHH-HHCCCEEEEECCCCCe-----------------E--CCeeccCCHHHcCCCCCEE
Confidence            689999999    79999999997 6788888777765321                 0  1223456889988899999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      ++++|. +....++. +..+ ...+.++++.+  .  .++.+.+++++..+.-
T Consensus        82 vi~vp~-~~~~~vv~-~~~~-~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~v  127 (144)
T 2d59_A           82 DLFVKP-KLTMEYVE-QAIK-KGAKVVWFQYN--T--YNREASKKADEAGLII  127 (144)
T ss_dssp             EECSCH-HHHHHHHH-HHHH-HTCSEEEECTT--C--CCHHHHHHHHHTTCEE
T ss_pred             EEEeCH-HHHHHHHH-HHHH-cCCCEEEECCC--c--hHHHHHHHHHHcCCEE
Confidence            999994 44555543 3333 23345665543  2  2677788777765543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.41  E-value=0.00023  Score=58.95  Aligned_cols=102  Identities=8%  Similarity=0.008  Sum_probs=59.5

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-c-ccccCCHHHH-hhcCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~sDiV~  241 (342)
                      .+++.|+|+|.+|+.+++.| ...|.+|.+.|+++....+.....+     ..+..-. + ......+.++ +.++|.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            56799999999999999998 6789999999997432111111100     0010000 0 0011234444 78999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      ++++...  .++.-....+.+.+...+|...+.
T Consensus        77 ~~~~~d~--~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           77 ALSDNDA--DNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             ECSSCHH--HHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             EecCChH--HHHHHHHHHHHHCCCCEEEEEECC
Confidence            9998543  333334455556454455544333

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.39  E-value=0.00039  Score=64.20  Aligned_cols=108  Identities=14%  Similarity=0.114  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+.++. ++..+.            .......++++ + ++|+|
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L-~~~G~~~v~v~nRt~~ka-~~La~~------------~~~~~~~~l~~-l-~~Div  182 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYL-KDNFAKDIYVVTRNPEKT-SEIYGE------------FKVISYDELSN-L-KGDVI  182 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHCTT------------SEEEEHHHHTT-C-CCSEE
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHh------------cCcccHHHHHh-c-cCCEE
Confidence            57899999999999999999998 57898 899999987642 221111            01111223444 4 89999


Q ss_pred             EEcCCCC--cccc-cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVLD--KTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lplt--~~t~-~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|..  +... -.+..+.|   +++.+++++.=.+ ..+.=|.+|-+.|
T Consensus       183 InaTp~Gm~~~~~~~pi~~~~l---~~~~~v~DlvY~P-~~T~ll~~A~~~G  230 (282)
T 3fbt_A          183 INCTPKGMYPKEGESPVDKEVV---AKFSSAVDLIYNP-VETLFLKYARESG  230 (282)
T ss_dssp             EECSSTTSTTSTTCCSSCHHHH---TTCSEEEESCCSS-SSCHHHHHHHHTT
T ss_pred             EECCccCccCCCccCCCCHHHc---CCCCEEEEEeeCC-CCCHHHHHHHHCc
Confidence            9999963  2211 12455444   6788888886443 2344444554544

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.39  E-value=0.00027  Score=66.18  Aligned_cols=117  Identities=12%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .++|+|||.|.||..+|..|+ .-|. +|..||++.+.......+ ......... .........++ +.++.||+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la-~~g~~~V~l~D~~~~~~~~~~~~-l~~~~~~~~-~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVG-KDNLADVVLFDIAEGIPQGKALD-ITHSMVMFG-STSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHH-HHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCCchHHHHHHHH-HHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEe
Confidence            468999999999999999975 4466 899999986532211000 000000000 01111222466 678999999999


Q ss_pred             CCCCcccccc-----------cCHh---HHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328          244 PVLDKTTYHL-----------INKE---RLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       244 lplt~~t~~l-----------i~~~---~l~~mk~gailIN~sRG~~vd~~aL~~aL  286 (342)
                      ++.. ...++           +-++   .++...|++++|+++...-+....+.+..
T Consensus        80 vg~p-~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           80 ASIP-GRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCCS-SCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCC-CCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            8421 11111           0011   22223579999999886655555666654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.37  E-value=0.001  Score=62.54  Aligned_cols=68  Identities=24%  Similarity=0.328  Sum_probs=50.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|+++... +.+.+.+            +...+.+++++++  +.|+|++
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~------------g~~~~~~~~~~l~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGA-QRLAEAN------------GAEAVASPDEVFARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHTT------------TCEEESSHHHHTTCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHc------------CCceeCCHHHHhcCCCCCEEEE
Confidence            4899999999999999987433478877 689887542 2222221            1234579999998  8999999


Q ss_pred             cCCC
Q 019328          243 HPVL  246 (342)
Q Consensus       243 ~lpl  246 (342)
                      ++|.
T Consensus        72 ~tp~   75 (344)
T 3euw_A           72 GSPT   75 (344)
T ss_dssp             CSCG
T ss_pred             eCCc
Confidence            9994

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.36  E-value=0.00043  Score=63.83  Aligned_cols=117  Identities=18%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++.||++.|+|.|.||+++|+.| ...| +|++++|+.++. ++..+.+....  ....... ....++.+.+.++|+|+
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L-~~~G-~V~v~~r~~~~~-~~l~~~~~~~~--~~~~~~~-~d~~~~~~~~~~~DilV  198 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAEKL--NKKFGEE-VKFSGLDVDLDGVDIII  198 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHHHH--TCCHHHH-EEEECTTCCCTTCCEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCC-CEEEEECCHHHH-HHHHHHHhhhc--cccccee-EEEeeHHHhhCCCCEEE
Confidence            57899999999999999999998 5789 999999986532 22222211100  0000000 01112345678899999


Q ss_pred             EcCCCCcccc---cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHc
Q 019328          242 LHPVLDKTTY---HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~lplt~~t~---~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~  288 (342)
                      .+.|......   ..+.  ..+.++++.+++|++-.. ..+. |.+..++
T Consensus       199 n~ag~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t~-ll~~a~~  244 (287)
T 1nvt_A          199 NATPIGMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LETV-LLKEAKK  244 (287)
T ss_dssp             ECSCTTCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSCH-HHHHHHT
T ss_pred             ECCCCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccCH-HHHHHHH
Confidence            9998654211   1120  135678999999998753 3333 4444443

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.33  E-value=0.00034  Score=67.27  Aligned_cols=166  Identities=16%  Similarity=0.219  Sum_probs=104.3

Q ss_pred             CceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcC
Q 019328          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (342)
Q Consensus       109 gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~  188 (342)
                      .|++.|+ +  -.-+|=-+++-+++..|                     ..|+.+...+|-|+|.|.-|..+|+.+ .++
T Consensus       156 ~ipvf~D-D--iqGTa~V~lAall~al~---------------------l~g~~l~d~kVVi~GAGaAG~~iA~ll-~~~  210 (398)
T 2a9f_A          156 HIPVFHD-D--QHGTAIVVLAAIFNSLK---------------------LLKKSLDEVSIVVNGGGSAGLSITRKL-LAA  210 (398)
T ss_dssp             SSCEEEH-H--HHHHHHHHHHHHHHHHH---------------------TTTCCTTSCEEEEECCSHHHHHHHHHH-HHH
T ss_pred             Ccceecc-h--hhhHHHHHHHHHHHHHH---------------------HhCCCCCccEEEEECCCHHHHHHHHHH-HHc
Confidence            5888883 2  22334445555555554                     124578899999999999999999997 688


Q ss_pred             Cc-EEEEEcCCh-----h-hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHcc
Q 019328          189 KM-NLIYYDLYQ-----A-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       189 g~-~V~~~d~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~  261 (342)
                      |. +|+.+|++.     + .....+...|..   ...  .  .....+|+|+++.+|+++=.     ++-+++.++.++.
T Consensus       211 Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~---~~~--~--~~~~~~L~eav~~ADV~IG~-----Sapgl~T~EmVk~  278 (398)
T 2a9f_A          211 GATKVTVVDKFGIINEQEAAQLAPHHLDIAK---VTN--R--EFKSGTLEDALEGADIFIGV-----SAPGVLKAEWISK  278 (398)
T ss_dssp             TCCEEEEEETTEECCTTCCCSCCC---CHHH---HHS--C--TTCCCSCSHHHHTTCSEEEC-----CSTTCCCHHHHHT
T ss_pred             CCCeEEEEECCCcccCCccccchHHHHHHhh---ccC--c--ccchhhHHHHhccCCEEEec-----CCCCCCCHHHHHh
Confidence            99 999999873     1 111111111111   000  0  01135799999999998766     2369999999999


Q ss_pred             CCCCcEEEecCCCccCCHHHHHHHHHcCC-ccEEEeecCCCCCCCCCCccCCCceEEcCCCC
Q 019328          262 MKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (342)
Q Consensus       262 mk~gailIN~sRG~~vd~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia  322 (342)
                      |+++++++.+|+-..  |-.-.+|.+.|+ |.+-|   -...|      -+..|+++-|=++
T Consensus       279 Ma~~pIIfalsNPt~--E~~pe~a~~~g~~i~atG---rs~~p------~Q~NN~~~FPgi~  329 (398)
T 2a9f_A          279 MAARPVIFAMANPIP--EIYPDEALEAGAYIVGTG---RSDFP------NQINNVLAFPGIF  329 (398)
T ss_dssp             SCSSCEEEECCSSSC--SSCHHHHHTTTCSEEEES---CTTSS------SBCCGGGTHHHHH
T ss_pred             hCCCCEEEECCCCCc--cCCHHHHHHhCCeEEEeC---CCCCC------CcCCceeEcchHH
Confidence            999999999998653  222223333355 44443   11111      3456777777554

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.31  E-value=0.00081  Score=63.06  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=50.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|+++... +.+.+.++       .    ...+.+++++++  +.|+|++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~~-------~----~~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENA-QKMAKELA-------I----PVAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHH-HHHHHHTT-------C----CCCBSSHHHHHHCTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHcC-------C----CceeCCHHHHhcCCCCCEEEE
Confidence            5899999999999999987433477876 678886542 22222221       1    023579999998  8999999


Q ss_pred             cCCCC
Q 019328          243 HPVLD  247 (342)
Q Consensus       243 ~lplt  247 (342)
                      ++|..
T Consensus        74 ~tp~~   78 (330)
T 3e9m_A           74 PTYNQ   78 (330)
T ss_dssp             CCCGG
T ss_pred             cCCCH
Confidence            99943

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.31  E-value=0.0003  Score=65.52  Aligned_cols=106  Identities=18%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      .+|||||+|.||+.+++.+.+.-+.++. ++|+++... +.    +    ..   .   ...+.+++++++  ++|+|++
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~-~~----~----~~---~---~~~~~~~~~~l~~~~~D~V~i   75 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNL-AL----V----PP---G---CVIESDWRSVVSAPEVEAVII   75 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHH-TT----C----CT---T---CEEESSTHHHHTCTTCCEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HH----H----Hh---h---CcccCCHHHHhhCCCCCEEEE
Confidence            4799999999999999987433367754 889886542 11    0    00   0   123568999996  7999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCc-EEEec-CCCccCCHHHHHHHHHcCCc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~ga-ilIN~-sRG~~vd~~aL~~aL~~g~i  291 (342)
                      ++|.  ....   +-..+.++.|. +++.- .--.+-+.+.|.++.++..+
T Consensus        76 ~tp~--~~h~---~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~  121 (315)
T 3c1a_A           76 ATPP--ATHA---EITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV  121 (315)
T ss_dssp             ESCG--GGHH---HHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred             eCCh--HHHH---HHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence            9993  2221   12223355564 55552 22233344667777665443

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.29  E-value=0.00061  Score=66.65  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=79.8

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCc---EEEEEc----CC--hhh--H---HHHHHhhhhhhhccCCCCCcccc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYD----LY--QAT--R---LEKFVTAYGQFLKANGEQPVTWK  225 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~---~V~~~d----~~--~~~--~---~~~~~~~~~~~~~~~~~~~~~~~  225 (342)
                      |..+.++++.|+|.|..|+.+++.| ...|+   +|+.+|    |+  ..+  .   ...+...+.   ..   ... ..
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L-~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a---~~---~~~-~~  252 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRIL-TEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLL---KK---TNG-EN  252 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHH-HHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHH---TT---SCT-TC
T ss_pred             CCCccCCEEEEECccHHHHHHHHHH-HHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHh---hc---ccc-cc
Confidence            3568899999999999999999998 57898   799999    76  211  1   111000110   00   000 00


Q ss_pred             ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       226 ~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      ...++.+.++++|+++.+.|..+   +++.++.++.|++++++++++.-  ..|.-+.+|.+.|.
T Consensus       253 ~~~~L~e~l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          253 IEGGPQEALKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGA  312 (439)
T ss_dssp             CCSSHHHHHTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTC
T ss_pred             ccccHHHHhccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCC
Confidence            13578999999999999988532   55667788899999999999543  34555556666554

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.00059  Score=65.83  Aligned_cols=107  Identities=15%  Similarity=0.211  Sum_probs=65.6

Q ss_pred             EEEEEccChHHHHHHHHHHhc-------CCcEEEEEcCChhhHHHHHHhhhhhhh-----ccCCCCCccccccCCHHHHh
Q 019328          167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a-------~g~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~ell  234 (342)
                      +|+|||.|..|.++|..|++.       |+.+|..|.|.++...+...+.....-     ...-..+.......++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            899999999999999987532       234688887664321010000000000     00011122223456899999


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +.||+|++++|. ...+.+ -++....++++..+|+++-|=
T Consensus       116 ~~ad~ii~avPs-~~~r~~-l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRI-CSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHH-HHHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECCh-hhhHHH-HHHhccccCCCceeEEecccc
Confidence            999999999992 333332 334455678999999999884

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.26  E-value=0.00069  Score=64.07  Aligned_cols=69  Identities=22%  Similarity=0.299  Sum_probs=50.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a-~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV  240 (342)
                      -.+|||||+|.||+..++.+.+. -++++. ++|+++... +.+.+.++            ...+.+++++++  +.|+|
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~~~~~~------------~~~~~~~~~ll~~~~~D~V   79 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAAL-KAAVERTG------------ARGHASLTDMLAQTDADIV   79 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHHC------------CEEESCHHHHHHHCCCSEE
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHH-HHHHHHcC------------CceeCCHHHHhcCCCCCEE
Confidence            35899999999999999987433 378866 789987542 22222221            234579999997  79999


Q ss_pred             EEcCCC
Q 019328          241 SLHPVL  246 (342)
Q Consensus       241 ~l~lpl  246 (342)
                      ++|+|.
T Consensus        80 ~i~tp~   85 (354)
T 3q2i_A           80 ILTTPS   85 (354)
T ss_dssp             EECSCG
T ss_pred             EECCCc
Confidence            999993

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.25  E-value=0.00097  Score=62.60  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=65.3

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEE-EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~  241 (342)
                      .+|||||+|.||+..++.+. +.-++++ .++|+++... +.+.+.++          . ...+.+++++++  ++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~-~~~a~~~g----------~-~~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQL-EWAKNELG----------V-ETTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHH-HHHHHTTC----------C-SEEESCHHHHHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHHHhC----------C-CcccCCHHHHhcCCCCCEEE
Confidence            58999999999999999874 3357885 4689887542 22222111          1 023468999997  699999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCc-EEEec-CCCccCCHHHHHHHHHcC-Ccc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQN-PMF  292 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~ga-ilIN~-sRG~~vd~~aL~~aL~~g-~i~  292 (342)
                      +++|..  ...   +-..+.++.|. +++.- .--..-+.+.|.++.++. .+.
T Consensus        77 i~tp~~--~h~---~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           77 IVAPTP--FHP---EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ECSCGG--GHH---HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             EeCChH--hHH---HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence            999932  221   22333445565 44431 111222334577777665 443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.25  E-value=0.0011  Score=62.64  Aligned_cols=105  Identities=12%  Similarity=0.203  Sum_probs=62.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|.+|..+|..|+ .-|. +|..||++.+.... ............. .........++++.++.||+|++++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la-~~g~~~V~L~D~~~~~~~~-~~~~l~~~~~~~~-~~~~i~~t~d~~ea~~~aDiVi~a~   86 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMPEG-KALDLSHVTSVVD-TNVSVRAEYSYEAALTGADCVIVTA   86 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHH-HHHHHHHHHHHTT-CCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECChhHHHH-HHHHHHhhhhccC-CCCEEEEeCCHHHHhCCCCEEEEcc
Confidence            58999999999999999985 4455 89999998653221 1111100000001 1111222368888899999999998


Q ss_pred             --CCCccc------cccc-------CH---hHHccCCCCcEEEecCC
Q 019328          245 --VLDKTT------YHLI-------NK---ERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 --plt~~t------~~li-------~~---~~l~~mk~gailIN~sR  273 (342)
                        |..+.-      +-.+       -.   +.+....|++++|+++-
T Consensus        87 g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  133 (331)
T 1pzg_A           87 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  133 (331)
T ss_dssp             SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence              654422      2111       01   12333358999998865

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.25  E-value=0.00093  Score=62.34  Aligned_cols=110  Identities=14%  Similarity=0.162  Sum_probs=63.1

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~l~  243 (342)
                      .+|||||+|.||+. +++.+.+.-+.++.++|+++... +.+.+.++       ..    ..+.+..+++ .++|+|+++
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~-~~~a~~~g-------~~----~~~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRYR-------VS----ATCTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHTT-------CC----CCCSSTTGGGGGCCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHcC-------CC----ccccCHHHHhhcCCCEEEEE
Confidence            47999999999984 88886332378888999987643 22222221       10    0022334455 789999999


Q ss_pred             CCCCcccccccCHhHHccCCCCc-EEEec-CCCccCCHHHHHHHHHcCCcc
Q 019328          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~ga-ilIN~-sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|  +....   +-..+.++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        71 tp--~~~h~---~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           71 AA--TDVHS---TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             SC--GGGHH---HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CC--chhHH---HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            99  33221   11223344453 55542 112233445677777665544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.24  E-value=0.0013  Score=61.21  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||.|.||..+|..|+ ..|  .+|..||++.... +.....++....... ...... ..++ +.++.||+|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~-~~g~~~~V~l~d~~~~~~-~~~~~~l~~~~~~~~-~~~~~~-~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLI-AQGVADDYVFIDANEAKV-KADQIDFQDAMANLE-AHGNIV-INDW-AALADADVVIST   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSS-SCCEEE-ESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEcCCHHHH-HHHHHHHHhhhhhcC-CCeEEE-eCCH-HHhCCCCEEEEe
Confidence            48999999999999999875 345  6899999986532 221111110000000 011111 2466 678999999999


Q ss_pred             CCCC
Q 019328          244 PVLD  247 (342)
Q Consensus       244 lplt  247 (342)
                      +|..
T Consensus        77 v~~~   80 (309)
T 1hyh_A           77 LGNI   80 (309)
T ss_dssp             CSCG
T ss_pred             cCCc
Confidence            9853

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.23  E-value=0.0028  Score=65.98  Aligned_cols=155  Identities=17%  Similarity=0.143  Sum_probs=96.4

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--Hh-hhhhh-----hccCCCCCccccccCCHHHHhhc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQF-----LKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~~-~~~~~-----~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      =++|||||.|.||..+|..++ ..|++|+.+|++++......  .. .+...     ...............++++ ++.
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a-~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~  393 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LST  393 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGS
T ss_pred             ccEEEEEcccHHHHHHHHHHH-hCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-Hhh
Confidence            379999999999999999975 77999999999875421111  00 00000     0000000011122334444 689


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceE
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  316 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi  316 (342)
                      ||+|+=++|-+-+.++-+-++.=+.++|+++|-.-+.+  +.-..|.++++ .+-.-.++=.|.+-|  .-||.+   ||
T Consensus       394 aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfnP~~--~m~LVE---vi  465 (742)
T 3zwc_A          394 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFSPAH--VMRLLE---VI  465 (742)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCSSTT--TCCEEE---EE
T ss_pred             CCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccCCCC--CCceEE---Ee
Confidence            99999999998888887777777889999998654433  44566766654 334555665554322  223444   78


Q ss_pred             EcCCCCCCcHHHH
Q 019328          317 VVPHIASASKWTR  329 (342)
Q Consensus       317 ~TPHia~~t~~~~  329 (342)
                      -+|+.+-.|.+..
T Consensus       466 ~g~~Ts~e~~~~~  478 (742)
T 3zwc_A          466 PSRYSSPTTIATV  478 (742)
T ss_dssp             ECSSCCHHHHHHH
T ss_pred             cCCCCCHHHHHHH
Confidence            8888765444443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.22  E-value=0.00096  Score=62.28  Aligned_cols=66  Identities=17%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             EEEEEccChHHHHH-HHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          167 TVGVIGAGRIGSAY-ARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       167 tvGIiG~G~IG~~v-A~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      +|||||+|.||+.+ ++.+.+ -+.++. ++|+++... +.+.+.++       ..    ..+.+++++++  ++|+|++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~-~~~~~~~g-------~~----~~~~~~~~~l~~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERG-AAYATENG-------IG----KSVTSVEELVGDPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHH-HHHHHHTT-------CS----CCBSCHHHHHTCTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHH-HHHHHHcC-------CC----cccCCHHHHhcCCCCCEEEE
Confidence            79999999999998 777654 778866 689887542 22222221       10    13468999997  4999999


Q ss_pred             cCC
Q 019328          243 HPV  245 (342)
Q Consensus       243 ~lp  245 (342)
                      ++|
T Consensus        69 ~tp   71 (332)
T 2glx_A           69 STT   71 (332)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            999

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.21  E-value=0.0013  Score=61.55  Aligned_cols=122  Identities=14%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||.|.||..+|..|+ ..|.  +|..||+++... +.....+.......  ...... ..+. +.++.||+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~-~~g~~~~V~l~D~~~~~~-~~~~~~l~~~~~~~--~~~~i~-~~d~-~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALL-MKGFAREMVLIDVDKKRA-EGDALDLIHGTPFT--RRANIY-AGDY-ADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGS--CCCEEE-ECCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHHHHHhhhhhc--CCcEEE-eCCH-HHhCCCCEEEEc
Confidence            47999999999999999874 4566  999999986532 11111111000000  011111 1343 567899999999


Q ss_pred             CCCCcccccc-----------cCHhHHcc---CCCCcEEEecCCCccCCHHHHHHHH--HcCCccEE
Q 019328          244 PVLDKTTYHL-----------INKERLAT---MKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRV  294 (342)
Q Consensus       244 lplt~~t~~l-----------i~~~~l~~---mk~gailIN~sRG~~vd~~aL~~aL--~~g~i~ga  294 (342)
                      +|.... .++           +-.+.++.   ..|++++|+++-+.-+.+..+.+..  ...++.|.
T Consensus        75 v~~~~~-~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           75 AGVPQK-PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CCCCCC-SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             cCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            995331 111           01222222   2578899988665433333333332  34456555

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.19  E-value=0.0012  Score=61.72  Aligned_cols=118  Identities=14%  Similarity=0.187  Sum_probs=72.5

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHHHHhhhhhhhccCCCCCccccccCCH---HHHh
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVL  234 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell  234 (342)
                      ++.||++.|+|.|.+|+.++..| ...|+ +|.+++|+   ..+ .++..+.+...   .+ .........++   .+.+
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L-~~~G~~~v~v~nRt~~~~~~-a~~la~~~~~~---~~-~~v~~~~~~~l~~~~~~l  218 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQA-AIEGIKEIKLFNRKDDFFEK-AVAFAKRVNEN---TD-CVVTVTDLADQHAFTEAL  218 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTHHHH-HHHHHHHHHHH---SS-CEEEEEETTCHHHHHHHH
T ss_pred             CcCCCEEEEECcCHHHHHHHHHH-HHcCCCEEEEEECCCchHHH-HHHHHHHhhhc---cC-cceEEechHhhhhhHhhc
Confidence            68899999999999999999998 57898 89999998   432 22222222110   00 00111122344   5678


Q ss_pred             hcCCEEEEcCCCCc--cccccc--CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          235 READVISLHPVLDK--TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       235 ~~sDiV~l~lplt~--~t~~li--~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      .++|+|+.+.|..-  .....+  +.   ..++++.++.++.=.+ ..+.=|.+|-+.|
T Consensus       219 ~~~DiIINaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  273 (312)
T 3t4e_A          219 ASADILTNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNP-HMTKLLQQAQQAG  273 (312)
T ss_dssp             HHCSEEEECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSS-SSCHHHHHHHHTT
T ss_pred             cCceEEEECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCC-CCCHHHHHHHHCC
Confidence            89999999999652  111111  22   3457788888876443 3444445555544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.17  E-value=0.00095  Score=63.40  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~  241 (342)
                      .+|||||+|.||+..++.+ +.. ++++. ++|+++....  ....+            +...+.+++++++  +.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~l~av~d~~~~~~~--~a~~~------------g~~~~~~~~~ll~~~~~D~V~   70 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLA-SAADNLEVHGVFDILAEKRE--AAAQK------------GLKIYESYEAVLADEKVDAVL   70 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTSTTEEEEEEECSSHHHHH--HHHTT------------TCCBCSCHHHHHHCTTCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHH-HhCCCcEEEEEEcCCHHHHH--HHHhc------------CCceeCCHHHHhcCCCCCEEE
Confidence            5899999999999999987 454 78876 5698875431  11111            1234579999998  789999


Q ss_pred             EcCCC
Q 019328          242 LHPVL  246 (342)
Q Consensus       242 l~lpl  246 (342)
                      +|+|.
T Consensus        71 i~tp~   75 (359)
T 3e18_A           71 IATPN   75 (359)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            99994

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.16  E-value=0.00087  Score=64.20  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .-+.||||+|+|.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa-~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAA-KEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCC
Confidence            457999999999999999999996 799999999998764

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.13  E-value=0.0013  Score=62.20  Aligned_cols=68  Identities=25%  Similarity=0.394  Sum_probs=50.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh--hcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~sDiV~  241 (342)
                      .+|||||+|.||+..++.+ +.. ++++. ++|+++... +.+.+.++            ...+.++++++  .+.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~lvav~d~~~~~~-~~~~~~~g------------~~~~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAY-TKSEKLKLVTCYSRTEDKR-EKFGKRYN------------CAGDATMEALLAREDVEMVI   71 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEECSSHHHH-HHHHHHHT------------CCCCSSHHHHHHCSSCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHH-HhCCCcEEEEEECCCHHHH-HHHHHHcC------------CCCcCCHHHHhcCCCCCEEE
Confidence            4899999999999999987 555 78865 779887542 22222221            12357999999  5699999


Q ss_pred             EcCCCC
Q 019328          242 LHPVLD  247 (342)
Q Consensus       242 l~lplt  247 (342)
                      +++|..
T Consensus        72 i~tp~~   77 (354)
T 3db2_A           72 ITVPND   77 (354)
T ss_dssp             ECSCTT
T ss_pred             EeCChH
Confidence            999954

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.11  E-value=0.00086  Score=62.41  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||.|.+|..+|..|+ ..|.  +|..||++.... +..........  ......... ..+. +.++.||+|+++
T Consensus         1 mkI~VIGaG~vG~~la~~la-~~g~~~eV~L~D~~~~~~-~~~~~~l~~~~--~~~~~~~i~-~~~~-~a~~~aDvVIi~   74 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALV-LRGSCSELVLVDRDEDRA-QAEAEDIAHAA--PVSHGTRVW-HGGH-SELADAQVVILT   74 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHH-HHHHHHHTTSC--CTTSCCEEE-EECG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCCHHHH-HHHHHhhhhhh--hhcCCeEEE-ECCH-HHhCCCCEEEEc
Confidence            47999999999999999874 5577  999999986532 21111111000  000011111 1243 568899999999


Q ss_pred             CCCCcc---cc--------cccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       244 lplt~~---t~--------~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      ++....   ++        .++.  .+.+....|++++|+++-+.=+....+.+.....++.|.
T Consensus        75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           75 AGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            953221   11        1110  122333468999999876554444455555555566555

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.09  E-value=0.0015  Score=61.89  Aligned_cols=72  Identities=15%  Similarity=0.307  Sum_probs=51.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHH-hcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~-~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDi  239 (342)
                      .-.+|||||+|.||+..++.++ +.-++++. ++|+++... +.+.+.++          .....+.+++++++  +.|+
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~g----------~~~~~~~~~~~ll~~~~~D~   90 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRA-QAALDKYA----------IEAKDYNDYHDLINDKDVEV   90 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHH-HHHHHHHT----------CCCEEESSHHHHHHCTTCCE
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHhC----------CCCeeeCCHHHHhcCCCCCE
Confidence            3468999999999999999874 23478876 689887542 22322221          01234579999997  4899


Q ss_pred             EEEcCCC
Q 019328          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~lpl  246 (342)
                      |++|+|.
T Consensus        91 V~i~tp~   97 (357)
T 3ec7_A           91 VIITASN   97 (357)
T ss_dssp             EEECSCG
T ss_pred             EEEcCCc
Confidence            9999994

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.08  E-value=0.001  Score=62.33  Aligned_cols=68  Identities=12%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccc-cccCCHHHHhh--cCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~--~sDiV~  241 (342)
                      .++||||+|.||+..++.+.+.-++++. ++|+++... ..+.+.            .+. ..+.+++++++  +.|+|+
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~-~~~a~~------------~~~~~~~~~~~~ll~~~~~D~V~   72 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESA-QAFANK------------YHLPKAYDKLEDMLADESIDVIY   72 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTT-CC---C------------CCCSCEESCHHHHHTCTTCCEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHHHH------------cCCCcccCCHHHHhcCCCCCEEE
Confidence            5899999999999999987444467765 678876542 111111            111 13579999998  799999


Q ss_pred             EcCCC
Q 019328          242 LHPVL  246 (342)
Q Consensus       242 l~lpl  246 (342)
                      +++|.
T Consensus        73 i~tp~   77 (329)
T 3evn_A           73 VATIN   77 (329)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99994

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.08  E-value=0.00012  Score=67.67  Aligned_cols=99  Identities=13%  Similarity=0.040  Sum_probs=62.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~l~l  244 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|..|+|+.+....         ....+..+...  ..+..+.+ ..+|+|++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~-~~g~~V~~~~r~~~~~~~---------~~~~g~~~~~~--~~~~~~~~~~~~D~vilav   70 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQ-QSLPHTTLIGRHAKTITY---------YTVPHAPAQDI--VVKGYEDVTNTFDVIIIAV   70 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HHCTTCEEEESSCEEEEE---------ESSTTSCCEEE--EEEEGGGCCSCEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeccCcEEE---------EecCCeeccce--ecCchHhcCCCCCEEEEeC
Confidence            57999999999999999984 557889999987532100         00111111111  11333443 7899999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      |.. +++..+ ++.-..+++++++|.+.-|=-..
T Consensus        71 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~~~  102 (294)
T 3g17_A           71 KTH-QLDAVI-PHLTYLAHEDTLIILAQNGYGQL  102 (294)
T ss_dssp             CGG-GHHHHG-GGHHHHEEEEEEEEECCSSCCCG
T ss_pred             Ccc-CHHHHH-HHHHHhhCCCCEEEEeccCcccH
Confidence            943 344433 23334457788999988875443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.08  E-value=0.0018  Score=61.29  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=49.4

Q ss_pred             CCCEEEEEccChHHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCE
Q 019328          164 KGQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       164 ~gktvGIiG~G~IG~-~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDi  239 (342)
                      .-.+|||||+|.||+ .+++.+.+.-++++. ++|+++... +.+.+.++            ...+.+++++++  +.|+
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~g------------~~~~~~~~~ll~~~~~D~   92 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRA-KRFTERFG------------GEPVEGYPALLERDDVDA   92 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHH-HHHHHHHC------------SEEEESHHHHHTCTTCSE
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHH-HHHHHHcC------------CCCcCCHHHHhcCCCCCE
Confidence            346899999999998 788887433378876 678886542 23322221            123478999997  5899


Q ss_pred             EEEcCCC
Q 019328          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~lpl  246 (342)
                      |++|+|.
T Consensus        93 V~i~tp~   99 (350)
T 3rc1_A           93 VYVPLPA   99 (350)
T ss_dssp             EEECCCG
T ss_pred             EEECCCc
Confidence            9999993

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.06  E-value=0.0014  Score=61.71  Aligned_cols=69  Identities=22%  Similarity=0.232  Sum_probs=49.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|+++... +.+.+.++       .    ...+.+++++++  .+|+|++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~~-------~----~~~~~~~~~ll~~~~~D~V~i   70 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRL-REMKEKLG-------V----EKAYKDPHELIEDPNVDAVLV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHH-HHHHHHHT-------C----SEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHhC-------C----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433478876 689887542 22222221       0    123579999998  8999999


Q ss_pred             cCCC
Q 019328          243 HPVL  246 (342)
Q Consensus       243 ~lpl  246 (342)
                      |+|.
T Consensus        71 ~tp~   74 (344)
T 3ezy_A           71 CSST   74 (344)
T ss_dssp             CSCG
T ss_pred             cCCC
Confidence            9994

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.06  E-value=0.00069  Score=63.02  Aligned_cols=116  Identities=15%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~sDiV~l~l  244 (342)
                      ++|+|||.|.||..+|..| . -|.+|..++|+.... +...+ .+......+..   .....+. ++....+|+|++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L-~-~g~~V~~~~r~~~~~-~~l~~-~G~~~~~~~~~---~~~~~~~~~~~~~~~D~vilav   75 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYL-S-LYHDVTVVTRRQEQA-AAIQS-EGIRLYKGGEE---FRADCSADTSINSDFDLLVVTV   75 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHH-HHHHH-HCEEEEETTEE---EEECCEEESSCCSCCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHH-h-cCCceEEEECCHHHH-HHHHh-CCceEecCCCe---ecccccccccccCCCCEEEEEe
Confidence            5899999999999999998 5 689999999986431 11111 11111110100   0000011 23567899999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      |.. ++...+  +.++.+.+++ +|.+.-|=-. ++.|.+.+...++.+
T Consensus        76 K~~-~~~~~l--~~l~~~~~~~-ivs~~nGi~~-~e~l~~~~~~~~vl~  119 (307)
T 3ego_A           76 KQH-QLQSVF--SSLERIGKTN-ILFLQNGMGH-IHDLKDWHVGHSIYV  119 (307)
T ss_dssp             CGG-GHHHHH--HHTTSSCCCE-EEECCSSSHH-HHHHHTCCCSCEEEE
T ss_pred             CHH-HHHHHH--HHhhcCCCCe-EEEecCCccH-HHHHHHhCCCCcEEE
Confidence            932 333333  2334445666 8877766422 234444444444433

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.03  E-value=0.0018  Score=60.84  Aligned_cols=70  Identities=21%  Similarity=0.299  Sum_probs=49.9

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~  241 (342)
                      .+|||||+|.||+..++.+. +.-++++. ++|+++... +.+.+.++          .....+.+++++++.  .|+|+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~-~~~~~~~g----------~~~~~~~~~~~ll~~~~~D~V~   71 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAA-QKVVEQYQ----------LNATVYPNDDSLLADENVDAVL   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHH-HHHHHHTT----------CCCEEESSHHHHHHCTTCCEEE
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHhC----------CCCeeeCCHHHHhcCCCCCEEE
Confidence            47999999999999999874 33578866 679886542 22222221          012345799999986  89999


Q ss_pred             EcCCC
Q 019328          242 LHPVL  246 (342)
Q Consensus       242 l~lpl  246 (342)
                      +++|.
T Consensus        72 i~tp~   76 (344)
T 3mz0_A           72 VTSWG   76 (344)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99993

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.03  E-value=0.0019  Score=60.77  Aligned_cols=104  Identities=19%  Similarity=0.325  Sum_probs=60.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+|||.|.+|..+|..++ ..|. +|..||++.+... .............. .........++ +.++.||+|++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la-~~g~~~V~L~Di~~~~l~-~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLG-QKDLGDVYMFDIIEGVPQ-GKALDLNHCMALIG-SPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSTTHHH-HHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECCHHHHH-HHHHHHHhHhhccC-CCCEEEECCCH-HHHCCCCEEEEcC
Confidence            68999999999999999875 4566 8999999865322 11111100000000 01112222566 6789999999998


Q ss_pred             --CCCcc-ccc-cc--C----H---hHHccCCCCcEEEecCC
Q 019328          245 --VLDKT-TYH-LI--N----K---ERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 --plt~~-t~~-li--~----~---~~l~~mk~gailIN~sR  273 (342)
                        |..+. |+. ++  |    .   +.+....|++++|+++-
T Consensus        91 g~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           91 GVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             SCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              43221 111 10  1    1   12223348899988765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.02  E-value=0.00088  Score=58.80  Aligned_cols=97  Identities=14%  Similarity=0.118  Sum_probs=56.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~l~l  244 (342)
                      ++|.|+|+|.+|+.+|+.| ...|.+|.++|++++... ......+...-. +    .......++++ ++++|+|++++
T Consensus         1 M~iiIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~~-~l~~~~~~~~i~-g----d~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSM-LSRKYGVVIINKDRELCE-EFAKKLKATIIH-G----DGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHH-HHTTCCEEEEESCHHHHH-HHHHHSSSEEEE-S----CTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HHHHHcCCeEEE-c----CCCCHHHHHhcCcccCCEEEEec
Confidence            3689999999999999998 578999999999876421 111111100000 0    00011124443 67899999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEec
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      |....  +++-....+.+.+...+|-.
T Consensus        74 ~~d~~--n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           74 PRDEV--NLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             SCHHH--HHHHHHHHHHTSCCCEEEEC
T ss_pred             CCcHH--HHHHHHHHHHHcCCCeEEEE
Confidence            85443  33333444444344444433

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.00  E-value=0.0023  Score=60.83  Aligned_cols=65  Identities=14%  Similarity=0.203  Sum_probs=46.8

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEE
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV  240 (342)
                      .+|||||+|.||+. .++.+ +.. ++++. ++|+++.....    .+           .+...+.+++++++  +.|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~~----~~-----------~~~~~~~~~~~ll~~~~~D~V   71 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLI-RSVPGLNLAFVASRDEEKVKR----DL-----------PDVTVIASPEAAVQHPDVDLV   71 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHHH----HC-----------TTSEEESCHHHHHTCTTCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHHh----hC-----------CCCcEECCHHHHhcCCCCCEE
Confidence            47999999999997 67766 444 78875 67888754211    11           01234579999998  78999


Q ss_pred             EEcCCC
Q 019328          241 SLHPVL  246 (342)
Q Consensus       241 ~l~lpl  246 (342)
                      ++|+|.
T Consensus        72 ~i~tp~   77 (364)
T 3e82_A           72 VIASPN   77 (364)
T ss_dssp             EECSCG
T ss_pred             EEeCCh
Confidence            999994

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.99  E-value=0.004  Score=58.95  Aligned_cols=113  Identities=18%  Similarity=0.155  Sum_probs=68.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l  242 (342)
                      .+|||||+|.||+.+++.+.+.-++++. ++|+++... ..+.+.++       . +.....+.+++++++  +.|+|++
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~-~~~a~~~~-------~-~~~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATANN-------Y-PESTKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHTT-------C-CTTCEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHhC-------C-CCCCeeeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433467764 788886542 22222221       0 001123578999997  5999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCc-EEEec-CCCccCCHHHHHHHHHcCCcc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~ga-ilIN~-sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ++|  +....   +-..+.++.|. +++.- ---.+-+.+.|.++.++..+.
T Consensus        78 ~tp--~~~h~---~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           78 PLP--TSLHV---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             CCC--GGGHH---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             cCC--hHHHH---HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence            999  33222   22334455665 44432 112223456788887776554

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.97  E-value=0.0019  Score=60.55  Aligned_cols=103  Identities=15%  Similarity=0.170  Sum_probs=63.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|||||+|+||+.+++.+.+.-++++. ++|++....       +       .   .+...+.++++++.++|+|++++
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-------~-------~---~gv~~~~d~~~ll~~~DvViiat   66 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-------T-------K---TPVFDVADVDKHADDVDVLFLCM   66 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-------S-------S---SCEEEGGGGGGTTTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-------h-------c---CCCceeCCHHHHhcCCCEEEEcC
Confidence            4799999999999999987433367754 778764320       0       0   11223457788888899999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCcc-C-CH-HHHHHHHHcCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV-I-DE-VALVEHLKQNP  290 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~-v-d~-~aL~~aL~~g~  290 (342)
                      |....     -+.....++.|.-++...-..+ + +. +.|.++.+++.
T Consensus        67 p~~~h-----~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           67 GSATD-----IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             CTTTH-----HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CcHHH-----HHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            84321     1233455666766665443332 2 22 45666666544

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.96  E-value=0.15  Score=47.24  Aligned_cols=106  Identities=12%  Similarity=0.064  Sum_probs=73.5

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|++|+++|= +++.++.+..+ ..||++|....|..-...+...+.       .     ......++++.++++|+|
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~-------~-----~~~~~~d~~eav~~aDvv  217 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVA-PLAGLKVRVATPKGYEPDPGLLKR-------A-----NAFFTHDPKEAALGAHAL  217 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHH-------H-----TCEEESCHHHHHTTCSEE
T ss_pred             CcCCcEEEEECCCchhHHHHHHHH-HHcCCEEEEECCchhcCCHHHHhh-------c-----eeEEECCHHHHhcCCCEE
Confidence            478999999998 89999999987 589999999987532111111110       0     022357899999999999


Q ss_pred             EEcCCCC------cc------cccccCHhHHccCCCCcEEEecC---CCccCCHH
Q 019328          241 SLHPVLD------KT------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       241 ~l~lplt------~~------t~~li~~~~l~~mk~gailIN~s---RG~~vd~~  280 (342)
                      ..-.-..      +.      ..--++.+.++.+||+++|.-+.   ||.=|+.+
T Consensus       218 y~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          218 YTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             EECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence            8843310      11      12346899999999999999886   67655544

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.95  E-value=0.0023  Score=62.86  Aligned_cols=77  Identities=16%  Similarity=0.210  Sum_probs=51.0

Q ss_pred             CCCEEEEEccChH--HHHHHHHHHh--c-CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          164 KGQTVGVIGAGRI--GSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       164 ~gktvGIiG~G~I--G~~vA~~l~~--a-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +..+|+|||.|.+  |..+++.+++  . .| +|..||+.+... +.. ......+..   .........++++.++.||
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~l-e~~-~~~~~~l~~---~~~~I~~TtD~~eAl~dAD   77 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAA-QKN-EVIGNHSGN---GRWRYEAVSTLKKALSAAD   77 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHH-HHH-HHHHTTSTT---SCEEEEEESSHHHHHTTCS
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHH-HHH-HHHHHHHhc---cCCeEEEECCHHHHhcCCC
Confidence            4569999999998  5788877643  2 35 999999987532 111 111111111   2233344578999999999


Q ss_pred             EEEEcCCC
Q 019328          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~lpl  246 (342)
                      +|+.+++-
T Consensus        78 fVI~airv   85 (450)
T 3fef_A           78 IVIISILP   85 (450)
T ss_dssp             EEEECCCS
T ss_pred             EEEecccc
Confidence            99999964

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.91  E-value=0.0019  Score=61.24  Aligned_cols=68  Identities=10%  Similarity=0.142  Sum_probs=47.5

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC--CEEE
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--DiV~  241 (342)
                      .+|||||+|.||+. .++.+.+.-++++. ++|+++... +.+.+.+       +    ....+.+++++++..  |+|+
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------~----~~~~~~~~~~ll~~~~vD~V~   73 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERA-RRVHRFI-------S----DIPVLDNVPAMLNQVPLDAVV   73 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHH-GGGGGTS-------C----SCCEESSHHHHHHHSCCSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence            58999999999995 88887433378876 789987642 1111111       0    122357999999865  9999


Q ss_pred             EcCC
Q 019328          242 LHPV  245 (342)
Q Consensus       242 l~lp  245 (342)
                      +|+|
T Consensus        74 i~tp   77 (359)
T 3m2t_A           74 MAGP   77 (359)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            9999

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.91  E-value=0.0014  Score=60.89  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|||||+|.||+.+++.+.+.-++++. ++|+++.....     +       +   ..+....++.+. .++|+|++|+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~-----~-------g---~~~~~~~~l~~~-~~~DvViiat   73 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF-----E-------L---QPFRVVSDIEQL-ESVDVALVCS   73 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC------------C-------C---TTSCEESSGGGS-SSCCEEEECS
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH-----c-------C---CCcCCHHHHHhC-CCCCEEEECC
Confidence            5899999999999999987444578887 68987653210     1       1   111223455555 7899999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCC--C-ccCCHHHHHHHHHcCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSR--G-PVIDEVALVEHLKQNP  290 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sR--G-~~vd~~aL~~aL~~g~  290 (342)
                      |.  .+..   +-..+.++.|.-++...-  + ...+.+.|.++.++..
T Consensus        74 p~--~~h~---~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           74 PS--REVE---RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             CH--HHHH---HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             Cc--hhhH---HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            93  2221   222334455666665421  2 2223345666655543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.90  E-value=0.0036  Score=58.69  Aligned_cols=104  Identities=14%  Similarity=0.205  Sum_probs=60.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+|||.|.+|..+|..++ .-|. +|..+|.+.+.. +.............. .........++ +.++.||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la-~~g~~~v~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIV-QKNLGDVVLFDIVKNMP-HGKALDTSHTNVMAY-SNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHTHHHHHT-CCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCHHHH-HHHHHHHHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEeC
Confidence            58999999999999999975 4465 899999886532 111111110000000 11112222566 6789999999998


Q ss_pred             --CCCccc------c-cc------cCHh---HHccCCCCcEEEecCC
Q 019328          245 --VLDKTT------Y-HL------INKE---RLATMKKEAILVNCSR  273 (342)
Q Consensus       245 --plt~~t------~-~l------i~~~---~l~~mk~gailIN~sR  273 (342)
                        |..+.-      + .+      +-.+   .+....|++++|+++-
T Consensus        81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  127 (322)
T 1t2d_A           81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  127 (322)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              544331      1 11      1112   2222358999998754

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.89  E-value=0.29  Score=45.76  Aligned_cols=114  Identities=18%  Similarity=0.245  Sum_probs=73.0

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|++|+++|=|  ++.++.+..+ ..||++|.+..|..-...+.+.+......+..+   .......++++.++++|+
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  239 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADV  239 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSE
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHHccCCE
Confidence            4789999999996  9999999987 589999999988532111111110000000111   112335789999999999


Q ss_pred             EEEcCCC-------Ccc-----cccccCHhHHccC-CCCcEEEecC---CCccCCH
Q 019328          240 ISLHPVL-------DKT-----TYHLINKERLATM-KKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       240 V~l~lpl-------t~~-----t~~li~~~~l~~m-k~gailIN~s---RG~~vd~  279 (342)
                      |..-.-.       .++     ..--++++.++.+ ||+++|.-+.   ||.=|+.
T Consensus       240 vyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~  295 (325)
T 1vlv_A          240 VYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTY  295 (325)
T ss_dssp             EEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCH
T ss_pred             EEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCH
Confidence            9885331       011     1234688999999 9999998874   4554443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.88  E-value=0.00035  Score=63.21  Aligned_cols=102  Identities=20%  Similarity=0.254  Sum_probs=64.4

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh-------------------hhHHHHHHhhhhhhhccCCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-------------------ATRLEKFVTAYGQFLKANGEQ  220 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~  220 (342)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|+..                   .+ .+...+.+...   ....
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La-~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~K-a~~~~~~l~~~---np~~  101 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK-VESARDALTRI---NPHI  101 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBH-HHHHHHHHHHH---CTTS
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHH-HcCCCeEEEEcCCCcccccCCcccccChhhcCcHH-HHHHHHHHHHH---CCCc
Confidence            4689999999999999999999984 6786 899999875                   21 11111111100   0000


Q ss_pred             Cccc-c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          221 PVTW-K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       221 ~~~~-~---~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      .+.. .   ...+++++++++|+|+.+++ +.+++.++++...+.   +..+|+.
T Consensus       102 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          102 AITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             EEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             EEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence            0000 0   01245678899999999987 577888887766553   3345554

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.87  E-value=0.08  Score=49.75  Aligned_cols=191  Identities=16%  Similarity=0.142  Sum_probs=108.8

Q ss_pred             HHHHhCCCeEEEecCCCCC----CCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhHHH
Q 019328           31 NLLIEQDCRVEICTQKKTI----LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (342)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~  106 (342)
                      ....+.|..+......+..    .+-.+...-+..-+|+++++..   ....+..+                      |+
T Consensus        64 ~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~---~~~~~~~l----------------------A~  118 (333)
T 1duv_G           64 VAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGY---GQEIVETL----------------------AE  118 (333)
T ss_dssp             HHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECS---CHHHHHHH----------------------HH
T ss_pred             HHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcC---CchHHHHH----------------------HH
Confidence            3455677777665433211    2444555555545687777743   23322222                      23


Q ss_pred             hCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccC--hHHHHHHHHH
Q 019328          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYARMM  184 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G--~IG~~vA~~l  184 (342)
                      -.+|+|.|.-+....+.-  +|+=++.+.+++                    .|..+.|.+|++||=|  ++.++.+..+
T Consensus       119 ~~~vPVINa~~~~~HPtQ--~LaDl~Ti~e~~--------------------~g~~l~gl~ia~vGD~~~~va~Sl~~~~  176 (333)
T 1duv_G          119 YASVPVWNGLTNEFHPTQ--LLADLLTMQEHL--------------------PGKAFNEMTLVYAGDARNNMGNSMLEAA  176 (333)
T ss_dssp             HHSSCEEESCCSSCCHHH--HHHHHHHHHHHS--------------------TTCCGGGCEEEEESCTTSHHHHHHHHHH
T ss_pred             hCCCCeEcCCCCCCCchH--HHHHHHHHHHHh--------------------cCCCCCCcEEEEECCCccchHHHHHHHH
Confidence            336999996654333322  222223222220                    1225889999999986  9999999987


Q ss_pred             HhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC--Cc------c-----cc
Q 019328          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL--DK------T-----TY  251 (342)
Q Consensus       185 ~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl--t~------~-----t~  251 (342)
                       ..||++|.+..|..-...+.+.+......+..+   .......++++.++++|+|..-.-.  ..      +     ..
T Consensus       177 -~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~  252 (333)
T 1duv_G          177 -ALTGLDLRLVAPQACWPEAALVTECRALAQQNG---GNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRE  252 (333)
T ss_dssp             -HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT---CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGG
T ss_pred             -HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhc
Confidence             579999999988532111111110000000111   1223357999999999999885431  10      0     12


Q ss_pred             cccCHhHHccC-CCCcEEEecC
Q 019328          252 HLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       252 ~li~~~~l~~m-k~gailIN~s  272 (342)
                      --++.+.++.+ ||+++|.-+.
T Consensus       253 y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          253 YQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             GCBCHHHHHTTCCTTCEEEECS
T ss_pred             cccCHHHHHhccCCCcEEECCC
Confidence            35689999999 9999998773

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.86  E-value=0.0025  Score=59.61  Aligned_cols=104  Identities=17%  Similarity=0.250  Sum_probs=59.1

Q ss_pred             CCEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -++|+|||.|.||..+|..++. ++.-+|..+|++... .+............ ........  .+..+.++.||+|+++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~-~~~~~~dl~~~~~~-~~~~~~i~--~~~~~al~~aDvViia   81 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK-AIGDAMDFNHGKVF-APKPVDIW--HGDYDDCRDADLVVIC   81 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHHHHHHHHHHTTS-SSSCCEEE--ECCGGGTTTCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcch-HHHHHhhHHHHhhh-cCCCeEEE--cCcHHHhCCCCEEEEc
Confidence            3689999999999999998742 333489999998652 22211111110000 00011111  2345678999999999


Q ss_pred             CCCCcccccc-----c--C----H---hHHccCCCCcEEEecCC
Q 019328          244 PVLDKTTYHL-----I--N----K---ERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lplt~~t~~l-----i--~----~---~~l~~mk~gailIN~sR  273 (342)
                      .|... ..++     +  |    .   +.+....|++++++++-
T Consensus        82 ~~~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           82 AGANQ-KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             CSCCC-CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCC-CCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            76432 1111     1  0    1   12233358889999855

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.85  E-value=0.0014  Score=59.09  Aligned_cols=82  Identities=16%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|+|+|+||+.+++.+. ..+-++.+ +|+.....                   .+...+.++++++ ++|+|+-+.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~-~~~~eLva~~d~~~~~~-------------------~gv~v~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAE-EKGHEIVGVIENTPKAT-------------------TPYQQYQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCC---------------------CCSCBCSCTTTCT-TCSEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHH-hCCCEEEEEEecCcccc-------------------CCCceeCCHHHHh-CCCEEEEeC
Confidence            58999999999999999874 44337654 78765420                   1222346888888 899988544


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +- ..+.     +.++ ++.|.-+|....|-
T Consensus        63 ~p-~a~~-----~~~~-l~~g~~vVigTTG~   86 (243)
T 3qy9_A           63 NP-NLLF-----PLLD-EDFHLPLVVATTGE   86 (243)
T ss_dssp             CH-HHHH-----HHHT-SCCCCCEEECCCSS
T ss_pred             Ch-HHHH-----HHHH-HhcCCceEeCCCCC
Confidence            31 2222     2334 77777777666663

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.82  E-value=0.31  Score=45.34  Aligned_cols=114  Identities=16%  Similarity=0.193  Sum_probs=73.5

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|++|++||= +++.++.+..+ ..||++|.+..|..-...+...+......+..+   .......++++.++++|+|
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDvv  227 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNAAESG---GSFELLHDPVKAVKDADVI  227 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSEE
T ss_pred             CcCCcEEEEECCCcchHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCEE
Confidence            478999999997 89999999987 589999999987532111111110000000001   1123357899999999999


Q ss_pred             EEcCCC-------Ccc-----cccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          241 SLHPVL-------DKT-----TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       241 ~l~lpl-------t~~-----t~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      ..-.-.       .++     ..--++.+.++.+||+++|.-+.   ||.=|+.
T Consensus       228 y~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~  281 (315)
T 1pvv_A          228 YTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTD  281 (315)
T ss_dssp             EECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCH
T ss_pred             EEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCH
Confidence            885431       111     12346889999999999998874   5554444

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.81  E-value=0.0024  Score=63.22  Aligned_cols=128  Identities=10%  Similarity=0.186  Sum_probs=75.0

Q ss_pred             CCEEEEEccChH--HHHHHHHHH--hcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          165 GQTVGVIGAGRI--GSAYARMMV--EGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       165 gktvGIiG~G~I--G~~vA~~l~--~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ..+|+|||.|.+  |.++|..|+  .++ |.+|..||+....... ..+.....+.. ...+.......++++.++.||+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~-~~~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEE-VGADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHH-TTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhcc-CCCCcEEEEECCHHHHhCCCCE
Confidence            468999999997  465566654  244 7899999998754211 11111111111 1112223334688888999999


Q ss_pred             EEEcCCCC---------------------cccc-------ccc----C-------HhHHccCCCCcEEEecCCCccCCHH
Q 019328          240 ISLHPVLD---------------------KTTY-------HLI----N-------KERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       240 V~l~lplt---------------------~~t~-------~li----~-------~~~l~~mk~gailIN~sRG~~vd~~  280 (342)
                      |++++|..                     .+|.       +++    +       .+.+....|++++||++----+-+.
T Consensus        81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~  160 (480)
T 1obb_A           81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT  160 (480)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred             EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence            99999731                     1110       111    0       1334445699999999876544455


Q ss_pred             HHHHHHHcCCccEEE
Q 019328          281 ALVEHLKQNPMFRVG  295 (342)
Q Consensus       281 aL~~aL~~g~i~gaa  295 (342)
                      ++.+ +...++.|.+
T Consensus       161 ~~~k-~p~~rviG~c  174 (480)
T 1obb_A          161 LVTR-TVPIKAVGFC  174 (480)
T ss_dssp             HHHH-HSCSEEEEEC
T ss_pred             HHHH-CCCCcEEecC
Confidence            5544 5555666664

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.77  E-value=0.0026  Score=57.67  Aligned_cols=99  Identities=19%  Similarity=0.240  Sum_probs=68.5

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      -+..+|+++|+|.||+.+++.   . ++++ .+|+  .+.                ++.  +.....+++++++++|+|+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~--~k~----------------gel--gv~a~~d~d~lla~pD~VV   65 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD--RIS----------------KDI--PGVVRLDEFQVPSDVSTVV   65 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH---S-CCSEEEEEC--SSC----------------CCC--SSSEECSSCCCCTTCCEEE
T ss_pred             cccceEEEECcCHHHHHHHhc---C-CcEEEEEEe--ccc----------------ccc--CceeeCCHHHHhhCCCEEE
Confidence            456799999999999999986   3 6664 4566  111                111  2223467899988999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH---HHHHHHHHcCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~---~aL~~aL~~g~  290 (342)
                      =|.+  .+   -+.+...+.++.|.-+|-+|-|.+.|.   +.|.++-++|.
T Consensus        66 e~A~--~~---av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg  112 (253)
T 1j5p_A           66 ECAS--PE---AVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP  112 (253)
T ss_dssp             ECSC--HH---HHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred             ECCC--HH---HHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence            8875  21   233346677899999999999999887   45555555554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.73  E-value=0.0012  Score=64.24  Aligned_cols=93  Identities=16%  Similarity=0.170  Sum_probs=58.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC---HHHH-hhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~sDiV  240 (342)
                      +.+|.|+|+|++|+.+|+.| ...|.+|++.|+++......         +..+..-. .....+   |.++ +.++|+|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L-~~~g~~vvvId~d~~~v~~~---------~~~g~~vi-~GDat~~~~L~~agi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLL-LSSGVKMVVLDHDPDHIETL---------RKFGMKVF-YGDATRMDLLESAGAAKAEVL   72 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEECCHHHHHHH---------HHTTCCCE-ESCTTCHHHHHHTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHHHHH---------HhCCCeEE-EcCCCCHHHHHhcCCCccCEE
Confidence            35699999999999999998 68899999999987642211         11111111 111223   3333 6789999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEe
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN  270 (342)
                      +++++....  ++.-....+.+.|...+|-
T Consensus        73 iv~~~~~~~--n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           73 INAIDDPQT--NLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             EECCSSHHH--HHHHHHHHHHHCTTCEEEE
T ss_pred             EECCCChHH--HHHHHHHHHHhCCCCeEEE
Confidence            999995443  3333445555566644443

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.72  E-value=0.0043  Score=58.02  Aligned_cols=68  Identities=13%  Similarity=0.212  Sum_probs=47.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC---cEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDi  239 (342)
                      .++||||+|.||+..++.+ +..+   +++. ++|+++.. .+.+.+.++       ..    ..+.+++++++  +.|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l-~~~~~~~~~l~av~d~~~~~-a~~~a~~~~-------~~----~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVL-QTLPRSEHQVVAVAARDLSR-AKEFAQKHD-------IP----KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTSCTTTEEEEEEECSSHHH-HHHHHHHHT-------CS----CEESSHHHHHHCTTCCE
T ss_pred             cEEEEECchHHHHHHHHHH-HhCCCCCeEEEEEEcCCHHH-HHHHHHHcC-------CC----cccCCHHHHhcCCCCCE
Confidence            4899999999999999987 4443   5654 67888654 233333332       10    13579999997  6999


Q ss_pred             EEEcCCC
Q 019328          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~lpl  246 (342)
                      |++++|.
T Consensus        70 V~i~tp~   76 (334)
T 3ohs_X           70 AYVGTQH   76 (334)
T ss_dssp             EEECCCG
T ss_pred             EEECCCc
Confidence            9999993

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.71  E-value=0.009  Score=55.33  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=59.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHH-HHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..++|+|||.|.||..+|..|+ ..|.  +|..+|++...... .....-+....  .  ........+. +.++.||+|
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~-~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~--~--~~~v~~~~~~-~~~~~aD~V   79 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAA-QRGIAREIVLEDIAKERVEAEVLDMQHGSSFY--P--TVSIDGSDDP-EICRDADMV   79 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHHHHHTGGGS--T--TCEEEEESCG-GGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChhHHHHHHHHHHhhhhhc--C--CeEEEeCCCH-HHhCCCCEE
Confidence            3468999999999999999974 5577  99999998643210 11000000000  0  1111111233 467899999


Q ss_pred             EEcCCCCcccccc------------cC--HhHHccCCCCcEEEecCCCc
Q 019328          241 SLHPVLDKTTYHL------------IN--KERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~lplt~~t~~l------------i~--~~~l~~mk~gailIN~sRG~  275 (342)
                      +++++... ..+.            +.  .+.++...+++++|+++-|-
T Consensus        80 ii~v~~~~-~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           80 VITAGPRQ-KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             EECCCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             EECCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            99996322 1110            00  11222236888999987764

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0027  Score=62.69  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=50.6

Q ss_pred             cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCC--ccccccCCHHHHhhc
Q 019328          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLRE  236 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~  236 (342)
                      .+..+.+++|.|+|.|.+|+.+++.|++..|.+|.+++|+..+. +...+..       +...  .......++.++++.
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~~~-------~~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANA-QALAKPS-------GSKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHGGG-------TCEEEECCTTCHHHHHHHHHT
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHhc-------CCcEEEEecCCHHHHHHHHcC
Confidence            45678999999999999999999998543478999999986542 2211110       1000  000111256678889


Q ss_pred             CCEEEEcCCCC
Q 019328          237 ADVISLHPVLD  247 (342)
Q Consensus       237 sDiV~l~lplt  247 (342)
                      +|+|+.++|..
T Consensus        89 ~DvVIn~tp~~   99 (467)
T 2axq_A           89 NDVVISLIPYT   99 (467)
T ss_dssp             SSEEEECSCGG
T ss_pred             CCEEEECCchh
Confidence            99999999953

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.69  E-value=0.058  Score=50.07  Aligned_cols=93  Identities=22%  Similarity=0.307  Sum_probs=66.3

Q ss_pred             ccCCCEEEEEccC---hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~G---~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+.|+||++||=|   ++.++.+..+ ..||++|.+..|..-.              ... ...+  ...++++.++++|
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~--------------~~~-~~~g--~~~d~~eav~~aD  205 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQ--------------DEE-NTFG--TYVSMDEAVESSD  205 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGS--------------CTT-CSSC--EECCHHHHHHHCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHH-HHcCCEEEEECCCccC--------------cch-hhcC--ccCCHHHHhCCCC
Confidence            4789999999975   6999999987 6899999998874211              000 0111  2458999999999


Q ss_pred             EEEEcCCCCcc-----------cccccCHhHHccCCCCcEEEecC
Q 019328          239 VISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       239 iV~l~lplt~~-----------t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +|..-.-..+.           ..--++.+.++.+|++++|.-+.
T Consensus       206 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          206 VVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             EEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             EEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence            99885321111           11236889999999999998775

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.68  E-value=0.0048  Score=57.94  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEE
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~  241 (342)
                      .++||||+|.||+. .+..+.+.-+++|. ++|+++.. .+++.+.|+.           ...+.+++++++.  .|+|+
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~g~-----------~~~y~d~~ell~~~~iDaV~   91 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTR-AREMADRFSV-----------PHAFGSYEEMLASDVIDAVY   91 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHH-HHHHHHHHTC-----------SEEESSHHHHHHCSSCSEEE
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHcCC-----------CeeeCCHHHHhcCCCCCEEE
Confidence            48999999999985 46665333478876 57888754 3334343321           1235799999964  79999


Q ss_pred             EcCC
Q 019328          242 LHPV  245 (342)
Q Consensus       242 l~lp  245 (342)
                      +++|
T Consensus        92 I~tP   95 (350)
T 4had_A           92 IPLP   95 (350)
T ss_dssp             ECSC
T ss_pred             EeCC
Confidence            9999

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.66  E-value=0.017  Score=56.28  Aligned_cols=118  Identities=16%  Similarity=0.252  Sum_probs=72.6

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCC---------hhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      |.++.|+||.|.|+|++|+.+|+.| ...|++|+ +.|.+         ......++.+..+.      ..........+
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L-~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~------i~~y~~a~~i~  302 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAF-HDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGG------VRGYPKAEPLP  302 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSS------STTCTTSEECC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHH-HHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCC------cccCCCceEcC
Confidence            3478999999999999999999997 68899998 44442         11112222221110      00000011234


Q ss_pred             HHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       230 l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      .++++ ..||+++-|..     .+.|+.+....++ -.+++-.+-+.+- .++ .+.|.+..+.
T Consensus       303 ~~ei~~~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~  358 (440)
T 3aog_A          303 AADFWGLPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVL  358 (440)
T ss_dssp             HHHHTTCCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred             chhhhcCCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCE
Confidence            56665 47999998855     4557777777774 5678888888864 333 3455555443

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.65  E-value=0.0024  Score=58.99  Aligned_cols=105  Identities=10%  Similarity=0.065  Sum_probs=64.7

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV  240 (342)
                      ..+|+|+|+ |++|+..++.+ +..|.+++ .+||.....                 ...+...+.+++++.+  ..|++
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g~-----------------~~~G~~vy~sl~el~~~~~~D~v   68 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGGT-----------------THLGLPVFNTVREAVAATGATAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCcccc-----------------eeCCeeccCCHHHHhhcCCCCEE
Confidence            468999999 99999999987 45688844 566642100                 0012234578999998  89999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHHHHcCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~aL~~g~i  291 (342)
                      ++++|  ++...-+-.+.++ .... .+|..+-|-- -+.+.|.++.++..+
T Consensus        69 iI~tP--~~~~~~~~~ea~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv  116 (288)
T 2nu8_A           69 VIYVP--APFCKDSILEAID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGV  116 (288)
T ss_dssp             EECCC--GGGHHHHHHHHHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecC--HHHHHHHHHHHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            99999  3332222222332 2223 3344554532 245588888877554

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.63  E-value=0.0074  Score=55.20  Aligned_cols=106  Identities=15%  Similarity=0.200  Sum_probs=66.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .++++.|||.|.+|+.++..| ...|+ +|.+++|+.++. +++.+.++.          .+  ..++.  +.++|+|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L-~~~G~~~i~v~nRt~~ka-~~la~~~~~----------~~--~~~~~--~~~~DivIn  181 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALYGY----------AY--INSLE--NQQADILVN  181 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHHTC----------EE--ESCCT--TCCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHcCC----------cc--chhhh--cccCCEEEE
Confidence            468999999999999999997 57897 799999997542 222222210          01  11222  468999999


Q ss_pred             cCCCCcccc-----cccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          243 HPVLDKTTY-----HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       243 ~lplt~~t~-----~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ++|..-...     -.+..+.   ++++.+++++.-.+ .++.-|.+|-+.|
T Consensus       182 aTp~gm~~~~~~~~~~~~~~~---l~~~~~v~DlvY~P-~~T~ll~~A~~~G  229 (271)
T 1npy_A          182 VTSIGMKGGKEEMDLAFPKAF---IDNASVAFDVVAMP-VETPFIRYAQARG  229 (271)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHH---HHHCSEEEECCCSS-SSCHHHHHHHHTT
T ss_pred             CCCCCccCccccCCCCCCHHH---cCCCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            999654211     1133333   35688899987644 3443334444444

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.62  E-value=0.0035  Score=55.46  Aligned_cols=92  Identities=10%  Similarity=0.150  Sum_probs=56.7

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC---HHHH-hhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~sDiV  240 (342)
                      .+++.|+|+|.+|+.+|+.| ...|. |+++|+++..... ...         +.. .......+   ++++ ++++|.|
T Consensus         9 ~~~viI~G~G~~G~~la~~L-~~~g~-v~vid~~~~~~~~-~~~---------~~~-~i~gd~~~~~~l~~a~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRKKV-LRS---------GAN-FVHGDPTRVSDLEKANVRGARAV   75 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHS-TTSEE-EEEESCGGGHHHH-HHT---------TCE-EEESCTTCHHHHHHTTCTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHH-HhCCe-EEEEECCHHHHHH-Hhc---------CCe-EEEcCCCCHHHHHhcCcchhcEE
Confidence            46899999999999999997 68888 9999998754211 101         100 00001122   3333 6789999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCC-cEEEec
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKE-AILVNC  271 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~g-ailIN~  271 (342)
                      ++++|...  .++.-....+.+.++ .++..+
T Consensus        76 i~~~~~d~--~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           76 IVDLESDS--ETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             EECCSCHH--HHHHHHHHHHHHCSSSEEEEEC
T ss_pred             EEcCCCcH--HHHHHHHHHHHHCCCCeEEEEE
Confidence            99998443  333444455666676 444443

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.62  E-value=0.064  Score=49.83  Aligned_cols=114  Identities=16%  Similarity=0.143  Sum_probs=72.7

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|++|+++|=|  ++.++.+..+ ..||++|....|..-...+.+.+......+..+   .......++++.++++|+
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDv  220 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGG-VTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTG---ASVTVTADAHAAAAGADV  220 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSE
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhcCCCE
Confidence            4789999999986  9999999987 589999999987532111111110000000111   112335789999999999


Q ss_pred             EEEcCCC-------Ccc-----cccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          240 ISLHPVL-------DKT-----TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       240 V~l~lpl-------t~~-----t~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      |..-.-.       .++     ..--++++.++.+||+++|.-+.   ||.=|+.
T Consensus       221 vy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~  275 (307)
T 2i6u_A          221 LVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITD  275 (307)
T ss_dssp             EEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCH
T ss_pred             EEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCH
Confidence            9984330       011     12346888999999999998774   4554443

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.61  E-value=0.28  Score=45.83  Aligned_cols=114  Identities=17%  Similarity=0.131  Sum_probs=71.6

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|+||++||= +++.++.+..+ ..+|++|.+..|..-...+.+.+......+..+   .......++++.++++|+|
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~eav~~aDvv  229 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGC-AKVGMSIAVATPEGFTPDPAVSARASEIAGRTG---AEVQILRDPFEAARGAHIL  229 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhcCCCEE
Confidence            478999999996 67888888886 579999999887531111111110000000001   1223457999999999999


Q ss_pred             EEcCCCCc-------c-----cccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          241 SLHPVLDK-------T-----TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       241 ~l~lplt~-------~-----t~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      ..-.-...       +     ..--++.+.++.+||+++|.-+.   ||.=|+.
T Consensus       230 yt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~  283 (323)
T 3gd5_A          230 YTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITD  283 (323)
T ss_dssp             EECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCH
T ss_pred             EEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCH
Confidence            87643111       0     01246899999999999998764   6654544

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.58  E-value=0.0073  Score=56.77  Aligned_cols=105  Identities=19%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      -.+++|+|||.|.||..+|..|+ ..|.  ++..+|...... +............  .....  ...+..+.++.||+|
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~-~g~a~DL~~~~~~--~~~~~--i~~~~~~a~~~aDiV   80 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMV-LQGIAQEIGIVDIFKDKT-KGDAIDLEDALPF--TSPKK--IYSAEYSDAKDADLV   80 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHHHTTGGG--SCCCE--EEECCGGGGTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHhhHhhhhhh--cCCcE--EEECcHHHhcCCCEE
Confidence            45679999999999999999874 3344  899999976532 1111111000000  00111  112345678999999


Q ss_pred             EEcCCCC--c-ccc-ccc--C-------HhHHccCCCCcEEEecCC
Q 019328          241 SLHPVLD--K-TTY-HLI--N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt--~-~t~-~li--~-------~~~l~~mk~gailIN~sR  273 (342)
                      +++....  | +|| .++  |       .+.+....|++++++++-
T Consensus        81 vi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             EECCCCC----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             EECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence            9986432  2 123 222  1       134455678999999974

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.54  E-value=0.0015  Score=62.38  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+.|++|||+|.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa-~~lG~~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSA-QKMGYKVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            56899999999999999999996 799999999998764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.54  E-value=0.0031  Score=59.96  Aligned_cols=73  Identities=21%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      +.++|+|+|.|.+|+.+|+.|+ . ..+|.+.|++.+.. +...+.    ..   ..........++.++++++|+|+.+
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~-~-~~~v~~~~~~~~~~-~~~~~~----~~---~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLK-D-EFDVYIGDVNNENL-EKVKEF----AT---PLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHT-T-TSEEEEEESCHHHH-HHHTTT----SE---EEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CccEEEEECCCHHHHHHHHHHh-c-CCCeEEEEcCHHHH-HHHhcc----CC---cEEEecCCHHHHHHHHhCCCEEEEe
Confidence            3447999999999999999974 3 46888889876542 111100    00   0001111234678889999999999


Q ss_pred             CCC
Q 019328          244 PVL  246 (342)
Q Consensus       244 lpl  246 (342)
                      +|.
T Consensus        85 ~p~   87 (365)
T 3abi_A           85 LPG   87 (365)
T ss_dssp             CCG
T ss_pred             cCC
Confidence            993

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.51  E-value=0.032  Score=51.72  Aligned_cols=100  Identities=16%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|++|+++|=   |++.++.+..+ ..| |++|.+..|..-...+..       ++.   .+.......++++.++++
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~-------~~~---~g~~~~~~~d~~eav~~a  214 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI-------LDE---LNYPVKEVENPFEVINEV  214 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH-------HTT---CCSCEEEESCGGGTGGGC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCchhcCCHHH-------HHH---cCCeEEEeCCHHHHhcCC
Confidence            478999999998   59999999986 689 999999988532111110       111   111223347899999999


Q ss_pred             CEEEEcCCCCcc------c-----ccccCHhHHccCCCCcEEEecC
Q 019328          238 DVISLHPVLDKT------T-----YHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       238 DiV~l~lplt~~------t-----~~li~~~~l~~mk~gailIN~s  272 (342)
                      |+|..-.-..+.      -     .--++.+.++.+||+++|.-+.
T Consensus       215 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          215 DVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             SEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             CEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence            999876553311      1     2346888899999999888764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.49  E-value=0.011  Score=58.06  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=70.5

Q ss_pred             ccccCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 g~~l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      +..+.|++|+|+|+-          .-...+++.| ...|++|.+|||.......   ..|         .  ......+
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L-~~~g~~v~~~DP~~~~~~~---~~~---------~--~~~~~~~  381 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAAL-QDAGATVKAYDPEGVEQAS---KML---------T--DVEFVEN  381 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHH-HHTSCEEEEECSSCHHHHG---GGC---------S--SCCBCSC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCCHhHH---Hhc---------C--CceEecC
Confidence            456899999999997          5678999998 6899999999998753211   011         0  1123468


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHhHH-ccCCCCcEEEecCCCccCCHHHH
Q 019328          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       230 l~ell~~sDiV~l~lplt~~t~~li~~~~l-~~mk~gailIN~sRG~~vd~~aL  282 (342)
                      +++.++.+|.|+++++-. +-+. ++-+.+ +.|+ +.+++++ |+ +.|.+.+
T Consensus       382 ~~~~~~~ad~vvi~t~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          382 PYAAADGADALVIVTEWD-AFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             HHHHHTTBSEEEECSCCT-TTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             hhHHhcCCCEEEEeeCCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            899999999999998733 3333 454444 4465 4678884 54 3565544

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.48  E-value=0.0024  Score=56.58  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=42.8

Q ss_pred             CEEEEEccChHHHHHHHH-HHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~-l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++++|||.|++|+.+++. .....|+++. ++|.++.....             ...+.......++++++++.|+++++
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~-------------~i~gv~V~~~~dl~eli~~~D~ViIA  152 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT-------------EVGGVPVYNLDDLEQHVKDESVAILT  152 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTC-------------EETTEEEEEGGGHHHHCSSCCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHh-------------HhcCCeeechhhHHHHHHhCCEEEEe
Confidence            369999999999999993 1235577765 56877653100             00112222356799999777999999


Q ss_pred             CCC
Q 019328          244 PVL  246 (342)
Q Consensus       244 lpl  246 (342)
                      +|.
T Consensus       153 vPs  155 (215)
T 2vt3_A          153 VPA  155 (215)
T ss_dssp             SCH
T ss_pred             cCc
Confidence            993

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.48  E-value=0.0072  Score=56.97  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=47.3

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEE
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~  241 (342)
                      .+|||||+|.||+. .++.+.+.-++++. ++|+++.....    .+           .+...+.+++++++.  .|+|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~----~~-----------~~~~~~~~~~~ll~~~~vD~V~   72 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA----DW-----------PAIPVVSDPQMLFNDPSIDLIV   72 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT----TC-----------SSCCEESCHHHHHHCSSCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh----hC-----------CCCceECCHHHHhcCCCCCEEE
Confidence            58999999999997 77776333378876 67887654211    00           112345799999976  89999


Q ss_pred             EcCCCC
Q 019328          242 LHPVLD  247 (342)
Q Consensus       242 l~lplt  247 (342)
                      +|+|..
T Consensus        73 i~tp~~   78 (352)
T 3kux_A           73 IPTPND   78 (352)
T ss_dssp             ECSCTT
T ss_pred             EeCChH
Confidence            999944

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.47  E-value=0.011  Score=54.74  Aligned_cols=126  Identities=17%  Similarity=0.241  Sum_probs=71.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|+|.|.+|..+|..|+ ..|.  +|..||+.+........+ ....... -..+.......+ .+.++.||+|+++
T Consensus         1 MkI~ViGaG~vG~~la~~l~-~~~~~~~v~L~D~~~~~~~g~~~d-l~~~~~~-~~~~~~i~~t~d-~~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCL-LNLDVDEIALVDIAEDLAVGEAMD-LAHAAAG-IDKYPKIVGGAD-YSLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHSCCSEEEEECSSHHHHHHHHHH-HHHHHHT-TTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECChHHHHHHHHH-HHhhhhh-cCCCCEEEEeCC-HHHhCCCCEEEEC
Confidence            37999999999999999874 3455  899999987542111010 0000000 001111222235 7889999999999


Q ss_pred             CCCC--c-cccc-cc--CH-------hHHccCCCCcEEEecCCCccCCHHHHHHHH----HcCCccEEE--ee
Q 019328          244 PVLD--K-TTYH-LI--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEHL----KQNPMFRVG--LD  297 (342)
Q Consensus       244 lplt--~-~t~~-li--~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~aL----~~g~i~gaa--lD  297 (342)
                      .+..  | .||. ++  |.       +.+....|++++++++  .++|.-..+-.-    ...++.|.+  ||
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            6532  2 1221 11  11       2455568999999998  455543322211    134677764  55

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.45  E-value=0.035  Score=52.80  Aligned_cols=107  Identities=16%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhH--HHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|++|++||=|  ++.++.+..+ ..||++|.+..|..-..  .+.+.+......+..+   .......++++.++.+
T Consensus       177 ~l~glkva~vGD~~nnva~Sl~~~~-~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~a  252 (365)
T 4amu_A          177 NLKNKKIVFIGDYKNNVGVSTMIGA-AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG---GSLRFSTDKILAAQDA  252 (365)
T ss_dssp             SCTTCEEEEESSTTSHHHHHHHHHH-HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS---CEEEEESCHHHHTTTC
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHH-HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC---CEEEEECCHHHHhcCC
Confidence            3889999999988  7889999886 58999999998853211  1111111100011111   1223457999999999


Q ss_pred             CEEEEcC--CCCccc-----------ccccCHhHHccCCCCcEEEecC
Q 019328          238 DVISLHP--VLDKTT-----------YHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       238 DiV~l~l--plt~~t-----------~~li~~~~l~~mk~gailIN~s  272 (342)
                      |+|..-+  ..+.+.           .--++.+.++.+||+++|.-+.
T Consensus       253 DVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          253 DVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             SEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             CEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            9999743  112111           1236888999999999888764

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.44  E-value=0.0058  Score=57.12  Aligned_cols=68  Identities=15%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             CEEEEEccChHHH-HHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~-~vA~~l~~a~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~  241 (342)
                      .+|||||+|.+|. .+++.+ +.-++++ .++|+++... +.+.+.++           +...+.+++++++  +.|+|+
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l-~~~~~~lvav~d~~~~~~-~~~a~~~~-----------~~~~~~~~~~ll~~~~~D~V~   71 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQL-IDAGAELAGVFESDSDNR-AKFTSLFP-----------SVPFAASAEQLITDASIDLIA   71 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHH-HHTTCEEEEEECSCTTSC-HHHHHHST-----------TCCBCSCHHHHHTCTTCCEEE
T ss_pred             cEEEEECCChHHHHHhhhhh-cCCCcEEEEEeCCCHHHH-HHHHHhcC-----------CCcccCCHHHHhhCCCCCEEE
Confidence            4899999999996 677776 4558886 5789886542 22222221           1123578999997  689999


Q ss_pred             EcCCC
Q 019328          242 LHPVL  246 (342)
Q Consensus       242 l~lpl  246 (342)
                      +++|.
T Consensus        72 i~tp~   76 (336)
T 2p2s_A           72 CAVIP   76 (336)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99993

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.42  E-value=0.006  Score=57.74  Aligned_cols=70  Identities=21%  Similarity=0.299  Sum_probs=45.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcC--------CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGF--------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~--------g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (342)
                      +--+|||||+|.||+.-++.+ +.+        +++|. ++|+++.. .+.+.+.|+.           ...+.++++++
T Consensus        24 kkirvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~g~-----------~~~y~d~~ell   90 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANAGL-AEARAGEFGF-----------EKATADWRALI   90 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC--TT-HHHHHHHHTC-----------SEEESCHHHHH
T ss_pred             CCccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCHHH-HHHHHHHhCC-----------CeecCCHHHHh
Confidence            335899999999999877664 332        46765 56887654 2333333321           12357999999


Q ss_pred             h--cCCEEEEcCCC
Q 019328          235 R--EADVISLHPVL  246 (342)
Q Consensus       235 ~--~sDiV~l~lpl  246 (342)
                      +  +-|+|++++|.
T Consensus        91 ~~~~iDaV~IatP~  104 (393)
T 4fb5_A           91 ADPEVDVVSVTTPN  104 (393)
T ss_dssp             HCTTCCEEEECSCG
T ss_pred             cCCCCcEEEECCCh
Confidence            6  46899999993

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.42  E-value=0.13  Score=48.64  Aligned_cols=107  Identities=17%  Similarity=0.210  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|.+|+++|=|  ++.++++..+ ..||++|.+..|..-...+.+.+......+..+   .......++++.++.+|+
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~-~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  248 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTG-AILGVNIHIVAPKALFPTEETQNIAKGFAEKSG---AKLVITDDLDEGLKGSNV  248 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSE
T ss_pred             CcCCeEEEEECCCccchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhcCCCE
Confidence            4789999999996  9999999987 579999999987532111111110000000111   112335799999999999


Q ss_pred             EEEcCCC--Cc---c------cccccCHhHHccCC---CCcEEEecC
Q 019328          240 ISLHPVL--DK---T------TYHLINKERLATMK---KEAILVNCS  272 (342)
Q Consensus       240 V~l~lpl--t~---~------t~~li~~~~l~~mk---~gailIN~s  272 (342)
                      |..-.-.  ..   +      ..--++.+.++.+|   |+++|.-+.
T Consensus       249 vytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          249 VYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             EEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             EEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence            9885431  11   0      12346888999999   899998774

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.41  E-value=0.0031  Score=59.39  Aligned_cols=69  Identities=16%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             CEEEEEccChHHHH-HHH-HHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEE
Q 019328          166 QTVGVIGAGRIGSA-YAR-MMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~-~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV  240 (342)
                      .++||||+|.||+. .++ .+...-++++. ++|+++... .. ...+           .+...+.+++++++.  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~-~~~~-----------~~~~~~~~~~~ll~~~~~D~V   69 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQ-APIY-----------SHIHFTSDLDEVLNDPDVKLV   69 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-GG-SGGG-----------TTCEEESCTHHHHTCTTEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-HH-HHhc-----------CCCceECCHHHHhcCCCCCEE
Confidence            47999999999996 455 33233478877 788876542 11 0000           112345799999986  8999


Q ss_pred             EEcCCCC
Q 019328          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~lplt  247 (342)
                      ++|+|..
T Consensus        70 ~i~tp~~   76 (345)
T 3f4l_A           70 VVCTHAD   76 (345)
T ss_dssp             EECSCGG
T ss_pred             EEcCChH
Confidence            9999943

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.39  E-value=0.042  Score=53.18  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=72.8

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhc-CCcEEE-EEcCC---------hhhHHHHHHhhhhhhhccCCCCCccccccC
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a-~g~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      |.++.|++|.|.|+|++|+.+|+.| .. .|++|+ +.|.+         .......+.+..+      ...........
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L-~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~l~~y~~a~~~  276 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLI-SQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG------TVVTYPKGERI  276 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSS------CSTTCSSSEEE
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-HHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhC------CcccCCCceEc
Confidence            4579999999999999999999987 56 899998 44442         1111222221111      11010001122


Q ss_pred             CHHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          229 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       229 ~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +.++++ ..||+++-|-.     .+.|+.+....++ -.+++--+-+++- .++- +.|.+..+.
T Consensus       277 ~~~eil~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a~-~~l~~~Gi~  333 (415)
T 2tmg_A          277 TNEELLELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEAD-EILSRRGIL  333 (415)
T ss_dssp             CHHHHTTCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHHH-HHHHHTTCE
T ss_pred             CchhhhcCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHHH-HHHHHCCCE
Confidence            456665 47999998865     4557888888884 5577777888864 4433 445555443

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.38  E-value=0.032  Score=52.47  Aligned_cols=107  Identities=13%  Similarity=0.188  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|++|+++|=|  ++.++.+..+ ..||++|....|..-...+.+.+......+..+   .......++++.++++|+
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  227 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF  227 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CcCCeEEEEecCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCE
Confidence            5889999999996  9999999987 589999999988532111111110000000111   112335799999999999


Q ss_pred             EEEcCCC--C------cc-----cccccCHhHHccC-CCCcEEEecC
Q 019328          240 ISLHPVL--D------KT-----TYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       240 V~l~lpl--t------~~-----t~~li~~~~l~~m-k~gailIN~s  272 (342)
                      |..-.-.  .      .+     ..--++.+.++.+ ||+++|.-+.
T Consensus       228 vytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            9885431  1      10     1234689999999 9999998773

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.37  E-value=0.0049  Score=58.49  Aligned_cols=94  Identities=14%  Similarity=0.221  Sum_probs=63.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC---HHHHhhcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~sDiV  240 (342)
                      .|.+|.|+|.|.||..+++.+ +.+|++|++.+++..+.... ...++       ....  ....+   +.++....|+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~-~~~lG-------a~~v--~~~~~~~~~~~~~~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVISTSPSKKEEA-LKNFG-------ADSF--LVSRDQEQMQAAAGTLDGI  255 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGHHHH-HHTSC-------CSEE--EETTCHHHHHHTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH-HHhcC-------CceE--EeccCHHHHHHhhCCCCEE
Confidence            688999999999999999985 79999999999876543211 11111       1100  01112   33344568999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +.++.....     -...++.|+++..+++++.
T Consensus       256 id~~g~~~~-----~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          256 IDTVSAVHP-----LLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             EECCSSCCC-----SHHHHHHEEEEEEEEECCC
T ss_pred             EECCCcHHH-----HHHHHHHHhcCCEEEEEcc
Confidence            999874432     2467788899999998875

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.34  E-value=0.0059  Score=57.80  Aligned_cols=66  Identities=11%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEE
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV  240 (342)
                      .+|||||+|.||+. .++.+ +.. ++++. ++|+++....    ..++           +...+.+++++++  +.|+|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~----~~~~-----------~~~~~~~~~~ll~~~~vD~V   69 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLL-DVLDEYQISKIMTSRTEEVK----RDFP-----------DAEVVHELEEITNDPAIELV   69 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECSCHHHHH----HHCT-----------TSEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEEccCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHH----hhCC-----------CCceECCHHHHhcCCCCCEE
Confidence            48999999999997 67776 444 78875 6788764311    1110           1234579999998  78999


Q ss_pred             EEcCCCC
Q 019328          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~lplt  247 (342)
                      ++|+|..
T Consensus        70 ~i~tp~~   76 (358)
T 3gdo_A           70 IVTTPSG   76 (358)
T ss_dssp             EECSCTT
T ss_pred             EEcCCcH
Confidence            9999954

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.34  E-value=0.015  Score=54.25  Aligned_cols=104  Identities=15%  Similarity=0.211  Sum_probs=59.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|+|.|.||..+|..++ ..|.  +|..+|..+... +.............. ...... ..+..+.++.||+|+++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~-~g~a~DL~~~~~~~~-~~~~v~-~~~~~~a~~~aDvVii~   76 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVA-RQDVAKEVVMVDIKDGMP-QGKALDMRESSPIHG-FDTRVT-GTNDYGPTEDSDVCIIT   76 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCSSEEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCEEE-EESSSGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCchHHH-HHHHHHHhccccccC-CCcEEE-ECCCHHHhCCCCEEEEC
Confidence            37999999999999999874 3344  899999987542 111111100000000 000111 12446778999999999


Q ss_pred             CCCC--c-ccc-ccc--CH-------hHHccCCCCcEEEecCC
Q 019328          244 PVLD--K-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lplt--~-~t~-~li--~~-------~~l~~mk~gailIN~sR  273 (342)
                      .+..  | .+| .++  |.       +.+....|++++++++-
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            7632  1 122 111  11       24455678999999984

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.32  E-value=0.48  Score=44.77  Aligned_cols=201  Identities=12%  Similarity=0.096  Sum_probs=109.6

Q ss_pred             HHHHHHhCCCeEEEecCCCC----CCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcccccCccChhH
Q 019328           29 WINLLIEQDCRVEICTQKKT----ILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~  104 (342)
                      +-....+.|..+......+.    ..+-.+....+..-+|+++++...   ...+..                      .
T Consensus        59 FE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~---~~~~~~----------------------l  113 (355)
T 4a8p_A           59 FETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER---HHSIVD----------------------L  113 (355)
T ss_dssp             HHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSS---HHHHHH----------------------H
T ss_pred             HHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc---HHHHHH----------------------H
Confidence            33345567777765533221    124445555555457888777432   222222                      2


Q ss_pred             HHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcc-ChHHHHHHHH
Q 019328          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM  183 (342)
Q Consensus       105 a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~-G~IG~~vA~~  183 (342)
                      |+-.+|+|.|.-+....++  .+|+=++.+.+++                   ..|..+.|++|++||= +++.++.+..
T Consensus       114 A~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~-------------------~~G~~l~glkva~vGD~~rva~Sl~~~  172 (355)
T 4a8p_A          114 ANCATIPVINGMSDYNHPT--QELGDLCTMVEHL-------------------PEGKKLEDCKVVFVGDATQVCFSLGLI  172 (355)
T ss_dssp             HHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTC-------------------CTTCCGGGCEEEEESCCCHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh-------------------hcCCCCCCCEEEEECCCchhHHHHHHH
Confidence            3445789999765332222  1222222222211                   0022588999999996 6788888888


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC----CCccc---------
Q 019328          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV----LDKTT---------  250 (342)
Q Consensus       184 l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp----lt~~t---------  250 (342)
                      + ..||++|.+..|..-...+.+.+......+..   +.......+++ .++++|+|..-+-    ...+.         
T Consensus       173 ~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~---G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~  247 (355)
T 4a8p_A          173 T-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVS---GGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFY  247 (355)
T ss_dssp             H-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHH---SCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHT
T ss_pred             H-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHc---CCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhc
Confidence            6 68999999988753111111111000000000   11123356889 9999999997431    10110         


Q ss_pred             -ccccCHhHHccCCCCcEEEecC---CCccCCHH
Q 019328          251 -YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       251 -~~li~~~~l~~mk~gailIN~s---RG~~vd~~  280 (342)
                       .--++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       248 ~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  281 (355)
T 4a8p_A          248 PKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  281 (355)
T ss_dssp             TTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence             1336888888899999988775   66555443

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.28  E-value=0.0045  Score=60.84  Aligned_cols=42  Identities=17%  Similarity=0.178  Sum_probs=37.0

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhH
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~  202 (342)
                      .-++.|++|.|||.|.+|...++.| ...|++|.++|+...+.
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L-~~~ga~V~vi~~~~~~~   48 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQ   48 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHH
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEcCCCCHH
Confidence            3578999999999999999999998 58999999999876543

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.27  E-value=0.086  Score=49.62  Aligned_cols=114  Identities=17%  Similarity=0.149  Sum_probs=72.1

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|+||++||= +++.++.+..+ ..||++|.+..|..-...+.+.+......+..+   .......++++.++++|+|
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDVv  251 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLAS-AKVGMHMTVATPVGYRPNEEIVKKALAIAKETG---AEIEILHNPELAVNEADFI  251 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHC---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhCCCCEE
Confidence            478999999996 57788888876 579999999887531111111110000000111   1123357899999999999


Q ss_pred             EEcCCCCc------c-----cccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          241 SLHPVLDK------T-----TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       241 ~l~lplt~------~-----t~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      ..-.-...      +     ..--++.+.++.+||+++|.-+.   ||.=|+.
T Consensus       252 yt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~  304 (340)
T 4ep1_A          252 YTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTG  304 (340)
T ss_dssp             EECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCH
T ss_pred             EecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCH
Confidence            87654221      0     01347899999999999999886   7755544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.27  E-value=0.022  Score=53.20  Aligned_cols=125  Identities=19%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             CCEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ..+|+|||.|.+|..+|..|+. ++.-+|..||...... +............. .......  .+..+.++.||+|+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~-~g~~~dl~~~~~~~-~~~~~v~--~~~~~a~~~aDvVvi~   81 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKV-RGDVMDLKHATPYS-PTTVRVK--AGEYSDCHDADLVVIC   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHH-HHHHHHHHHHGGGS-SSCCEEE--ECCGGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHh-hhhhhhHHhhhhhc-CCCeEEE--eCCHHHhCCCCEEEEC
Confidence            4689999999999999998753 2334899999876432 11111111000000 0111111  1346678999999999


Q ss_pred             CCCCcccccc-----c--C-------HhHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEE
Q 019328          244 PVLDKTTYHL-----I--N-------KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRV  294 (342)
Q Consensus       244 lplt~~t~~l-----i--~-------~~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~ga  294 (342)
                      .+... ..+.     +  |       .+.+....|++++|+++---=+-...+.+.  +...++.|.
T Consensus        82 ag~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           82 AGAAQ-KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCC-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEec
Confidence            86432 2211     0  1       123344479999999763222223333333  333466666

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.27  E-value=0.0093  Score=56.06  Aligned_cols=104  Identities=21%  Similarity=0.262  Sum_probs=59.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .++|+|||.|.||..+|..|+ ..|.  +|..+|+..... +............ .......  ..+..+.++.||+|++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~-~~~~~~~l~l~D~~~~k~-~g~a~DL~~~~~~-~~~~v~i--~~~~~~a~~~aDvVvi   79 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALI-NQGITDELVVIDVNKEKA-MGDVMDLNHGKAF-APQPVKT--SYGTYEDCKDADIVCI   79 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHHHHTGGG-SSSCCEE--EEECGGGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEecchHHH-HHHHHHHHhcccc-ccCCeEE--EeCcHHHhCCCCEEEE
Confidence            568999999999999999874 4454  899999976532 1111001000000 0001111  1223457899999999


Q ss_pred             cCCCC--c-cccc-cc--CH-------hHHccCCCCcEEEecCC
Q 019328          243 HPVLD--K-TTYH-LI--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lplt--~-~t~~-li--~~-------~~l~~mk~gailIN~sR  273 (342)
                      +....  | .+|. ++  |.       +.+....|++++++++-
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            97532  2 1221 11  11       23444578999999984

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.26  E-value=0.0063  Score=57.04  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             CCCEEEEEccChHHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---CC
Q 019328          164 KGQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---AD  238 (342)
Q Consensus       164 ~gktvGIiG~G~IG~-~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD  238 (342)
                      +-.+|||||+|.||+ ..++.+++--+++|. ++|++.+.                    .+...+.+++++++.   .|
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~--------------------~g~~~~~~~~~ll~~~~~vD   83 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV--------------------EGVNSYTTIEAMLDAEPSID   83 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC--------------------TTSEEESSHHHHHHHCTTCC
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh--------------------cCCCccCCHHHHHhCCCCCC
Confidence            346899999999998 688876433477865 56776432                    112245799999976   89


Q ss_pred             EEEEcCC
Q 019328          239 VISLHPV  245 (342)
Q Consensus       239 iV~l~lp  245 (342)
                      +|++++|
T Consensus        84 ~V~i~tp   90 (330)
T 4ew6_A           84 AVSLCMP   90 (330)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9999999

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.25  E-value=0.0079  Score=57.52  Aligned_cols=68  Identities=19%  Similarity=0.283  Sum_probs=48.7

Q ss_pred             CEEEEEccC-hHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEE
Q 019328          166 QTVGVIGAG-RIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvGIiG~G-~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~  241 (342)
                      .+|||||+| .||+..++.+.+.-++++. ++|+++... +.+.+.++            ...+.+++++++.  .|+|+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~g------------~~~~~~~~ell~~~~vD~V~   69 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVR-ERFGKEYG------------IPVFATLAEMMQHVQMDAVY   69 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHH-HHHHHHHT------------CCEESSHHHHHHHSCCSEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHH-HHHHHHcC------------CCeECCHHHHHcCCCCCEEE
Confidence            479999999 9999999887433467766 678886542 22222221            1235799999975  99999


Q ss_pred             EcCCC
Q 019328          242 LHPVL  246 (342)
Q Consensus       242 l~lpl  246 (342)
                      +++|.
T Consensus        70 i~tp~   74 (387)
T 3moi_A           70 IASPH   74 (387)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            99993

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.24  E-value=0.005  Score=58.00  Aligned_cols=105  Identities=8%  Similarity=0.033  Sum_probs=61.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ..++|+|||.|.||..+|..++ ..|.  +|..+|....... ..............  ........+.++ +++||+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la-~~g~~~ev~L~Di~~~~~~-g~a~DL~~~~~~~~--~~~i~~t~d~~~-~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVL-MKDLADEVALVDVMEDKLK-GEMMDLEHGSLFLH--TAKIVSGKDYSV-SAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHH-HHCCCSEEEEECSCHHHHH-HHHHHHHHHGGGSC--CSEEEEESSSCS-CSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECCHHHHH-HHHHHhhhhhhccc--CCeEEEcCCHHH-hCCCCEEE
Confidence            5789999999999999999874 4454  8999999765321 11111100000000  111112345655 89999999


Q ss_pred             EcCCCC--c-ccc-ccc--CH-------hHHccCCCCcEEEecCC
Q 019328          242 LHPVLD--K-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lplt--~-~t~-~li--~~-------~~l~~mk~gailIN~sR  273 (342)
                      ++....  | .|| .++  |.       +.+....|++++++++-
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            985422  1 122 122  11       23444579999999984

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.24  E-value=0.0072  Score=58.18  Aligned_cols=69  Identities=25%  Similarity=0.319  Sum_probs=47.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhc--------CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a--------~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  235 (342)
                      .+|||||+|.||+.-++.+++.        -+++|. ++|+++.. .+.+.+.|+.           ...+.+++++++ 
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~-a~~~a~~~~~-----------~~~y~d~~~ll~~   94 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAM-AERHAAKLGA-----------EKAYGDWRELVND   94 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHH-HHHHHHHHTC-----------SEEESSHHHHHHC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHH-HHHHHHHcCC-----------CeEECCHHHHhcC
Confidence            3899999999999888776321        145666 56888754 3333333321           123579999996 


Q ss_pred             -cCCEEEEcCCC
Q 019328          236 -EADVISLHPVL  246 (342)
Q Consensus       236 -~sDiV~l~lpl  246 (342)
                       +.|+|++++|.
T Consensus        95 ~~vD~V~I~tp~  106 (412)
T 4gqa_A           95 PQVDVVDITSPN  106 (412)
T ss_dssp             TTCCEEEECSCG
T ss_pred             CCCCEEEECCCc
Confidence             57999999993

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.22  E-value=0.0088  Score=57.52  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=67.6

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      -.++-|+|.|.+|+.+++.+ +.+|++|.++|+++...                          + .+-+..+|-++...
T Consensus       204 ~~rL~IfGAGhva~ala~~a-~~lg~~V~v~D~R~~~~--------------------------~-~~~fp~a~~~~~~~  255 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQG-AFLGYRVTVCDARPVFA--------------------------T-TARFPTADEVVVDW  255 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHH-HHTTCEEEEEESCTTTS--------------------------C-TTTCSSSSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchhhc--------------------------c-cccCCCceEEEeCC
Confidence            45899999999999999985 79999999999875420                          0 11134566555544


Q ss_pred             CCCcccccccCHhHHcc------CCCCcEEEecCCCccCCHHHHHHHHHcCCccEEE
Q 019328          245 VLDKTTYHLINKERLAT------MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (342)
Q Consensus       245 plt~~t~~li~~~~l~~------mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaa  295 (342)
                      |          .+.+..      +.+++++|=+.++.-.|...|..+|+++.....|
T Consensus       256 p----------~~~~~~~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          256 P----------HRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             H----------HHHHHHHHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             h----------HHHHHhhccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            4          122222      6788899999999999999999999987344444

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.22  E-value=0.018  Score=53.79  Aligned_cols=107  Identities=21%  Similarity=0.242  Sum_probs=60.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh-hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ..++|+|||.|.+|..+|..++ ..|. +|..+|+.+ ....+.............. .........+ .+.+++||+|+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~-~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~-~~~~i~~t~d-~~a~~~aDvVI   83 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLA-QKELADVVLVDIPQLENPTKGKALDMLEASPVQG-FDANIIGTSD-YADTADSDVVV   83 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHT-CCCCEEEESC-GGGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeccchHHHHHHhhhhHHHhhhhcc-CCCEEEEcCC-HHHhCCCCEEE
Confidence            4679999999999999999874 5677 999999984 2222211111100000000 0001111123 35689999999


Q ss_pred             EcCCC--Cc-ccc-ccc--C----H---hHHccCCCCcEEEecCC
Q 019328          242 LHPVL--DK-TTY-HLI--N----K---ERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lpl--t~-~t~-~li--~----~---~~l~~mk~gailIN~sR  273 (342)
                      ++...  .| .|| .++  |    +   +.+....|++++++++.
T Consensus        84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            99642  22 122 122  1    1   22333468999999984

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.22  E-value=0.073  Score=49.50  Aligned_cols=108  Identities=14%  Similarity=0.256  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|+||++||= +++.++.+..+ ..||++|....|..-...+.+       ..  ...+.......++++.++++|+|
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~-------~~--~~~g~~v~~~~d~~eav~~aDvv  220 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAA-RILDFKLQLSTPPGYALDAKL-------VD--AESAPFYQVFDDPNEACKGADLV  220 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCGGGCCCGGG-------SC--GGGGGGEEECSSHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHH-HHcCCEEEEECCcccCCCHHH-------HH--HHcCCeEEEEcCHHHHhcCCCEE
Confidence            478999999996 57788888876 589999999887431100000       00  00112233457999999999999


Q ss_pred             EEcC----CCC---cc-----cccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          241 SLHP----VLD---KT-----TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       241 ~l~l----plt---~~-----t~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      ..-.    ...   ++     ..--++.+.++.+||+++|.-+.   ||.=|+.
T Consensus       221 yt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~  274 (309)
T 4f2g_A          221 TTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTA  274 (309)
T ss_dssp             EECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCH
T ss_pred             EecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecH
Confidence            8754    110   00     12346899999999999998775   5654443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.21  E-value=0.0099  Score=55.57  Aligned_cols=122  Identities=18%  Similarity=0.220  Sum_probs=65.7

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCC--CCccccccCCHHHHhhcCCEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..+|+|||.|.+|..+|..++ ..|.  +|..+|...+.. +......    .+...  ...... ..+ .+.++.||+|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~-~~~~~~ev~L~Di~~~~~-~g~~~dl----~~~~~~~~~~~i~-~~~-~~a~~~aDvV   78 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMA-LRQTANELVLIDVFKEKA-IGEAMDI----NHGLPFMGQMSLY-AGD-YSDVKDCDVI   78 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHH-HTTCSSEEEEECCC---C-CHHHHHH----TTSCCCTTCEEEC---C-GGGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChHHH-HHHHHHH----HHhHHhcCCeEEE-ECC-HHHhCCCCEE
Confidence            358999999999999999874 4455  999999875431 1111111    11100  011111 123 5568999999


Q ss_pred             EEcCCCCcccccc-------cC----H---hHHccCCCCcEEEecCCCccCCH--HHHHHH--HHcCCccEEE--ee
Q 019328          241 SLHPVLDKTTYHL-------IN----K---ERLATMKKEAILVNCSRGPVIDE--VALVEH--LKQNPMFRVG--LD  297 (342)
Q Consensus       241 ~l~lplt~~t~~l-------i~----~---~~l~~mk~gailIN~sRG~~vd~--~aL~~a--L~~g~i~gaa--lD  297 (342)
                      +++.+.. ...++       .|    .   +.+....|++++|+++-  ++|.  ..+.+.  +...++.|.+  ||
T Consensus        79 ii~~g~p-~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           79 VVTAGAN-RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN--PVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             EECCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS--SHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             EEcCCCC-CCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecC--cHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            9998743 22221       01    1   12333368999999743  4443  333333  3344676763  56

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.20  E-value=0.01  Score=55.15  Aligned_cols=103  Identities=17%  Similarity=0.265  Sum_probs=58.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+|||.|.+|..+|..++ ..|. +|..+|.+.+.. +.............. .........+. +.++.||+|+++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la-~~g~~~v~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~a~   78 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLA-AKELGDIVLLDIVEGVP-QGKALDLYEASPIEG-FDVRVTGTNNY-ADTANSDVIVVTS   78 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCCeEEEEeCCccHH-HHHHHhHHHhHhhcC-CCeEEEECCCH-HHHCCCCEEEEcC
Confidence            58999999999999999874 5564 899999876432 221111111000000 01111222466 6689999999997


Q ss_pred             CCCcccccc-----c--C----H---hHHccCCCCcEEEecCC
Q 019328          245 VLDKTTYHL-----I--N----K---ERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 plt~~t~~l-----i--~----~---~~l~~mk~gailIN~sR  273 (342)
                      +. |...++     +  |    .   +.+....|++++++++-
T Consensus        79 g~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           79 GA-PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence            53 222221     0  1    1   22333458999999754

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.18  E-value=0.01  Score=55.94  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=25.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhc--CCcEEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a--~g~~V~~~d~  197 (342)
                      .+|||+|+|.||+.+.|.|...  =.++|.+.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            4799999999999999987543  4588876644

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.17  E-value=0.0059  Score=57.84  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEE
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~  241 (342)
                      .+|||||+|.||+. .++.+.+.-++++. ++|+++....    +.+          + +...+.+++++++.  .|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~----~~~----------~-~~~~~~~~~~ll~~~~vD~V~   70 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK----ERY----------P-QASIVRSFKELTEDPEIDLIV   70 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG----TTC----------T-TSEEESCSHHHHTCTTCCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH----HhC----------C-CCceECCHHHHhcCCCCCEEE
Confidence            58999999999997 67766333378875 6788764311    111          0 12345799999987  89999


Q ss_pred             EcCCC
Q 019328          242 LHPVL  246 (342)
Q Consensus       242 l~lpl  246 (342)
                      +|+|.
T Consensus        71 i~tp~   75 (362)
T 3fhl_A           71 VNTPD   75 (362)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99993

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.15  E-value=0.02  Score=55.78  Aligned_cols=87  Identities=13%  Similarity=0.202  Sum_probs=64.0

Q ss_pred             ccCCCEEEEEccC----------hHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       162 ~l~gktvGIiG~G----------~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .+.|++|+|+|+-          .-...+++.| ... |++|.+|||.....                      ....++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L-~~~~g~~V~~~DP~~~~~----------------------~~~~~~  368 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELL-NQEPDIEVCAYDPHVELD----------------------FVEHDM  368 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHH-HHSTTCEEEEECSSCCCT----------------------TBCSTT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHH-HhhcCCEEEEECCCcccc----------------------cccCCH
Confidence            4789999999984          2367889988 577 99999999976431                      123578


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       231 ~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ++.++.||.|+++.+- ++-+. ++.+.++.|+ +.+++++ |+-
T Consensus       369 ~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~-~~~i~D~-r~~  409 (431)
T 3ojo_A          369 SHAVKDASLVLILSDH-SEFKN-LSDSHFDKMK-HKVIFDT-KNV  409 (431)
T ss_dssp             HHHHTTCSEEEECSCC-GGGTS-CCGGGGTTCS-SCEEEES-SCC
T ss_pred             HHHHhCCCEEEEecCC-HHHhc-cCHHHHHhCC-CCEEEEC-CCC
Confidence            8999999999999873 33333 3445557777 6788885 543

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.15  E-value=0.011  Score=55.63  Aligned_cols=81  Identities=21%  Similarity=0.165  Sum_probs=46.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhcc--CCCC----CccccccCCHHHHhhcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKA--NGEQ----PVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~ell~~sD  238 (342)
                      .+|||+|+|.||+.+++.+...-++++.+ +|++++.. ..+...++.....  .+..    ........+.++++.++|
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~-~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vD   81 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE-AYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH-HHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHH-HHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCC
Confidence            37999999999999999874333577654 56653321 1111111100000  0000    000012357889999999


Q ss_pred             EEEEcCCCC
Q 019328          239 VISLHPVLD  247 (342)
Q Consensus       239 iV~l~lplt  247 (342)
                      +|+.|.|..
T Consensus        82 vV~~aTp~~   90 (334)
T 2czc_A           82 IIVDATPGG   90 (334)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCcc
Confidence            999999944

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.14  E-value=0.01  Score=57.84  Aligned_cols=73  Identities=11%  Similarity=0.122  Sum_probs=48.1

Q ss_pred             CEEEEEccChHHH-HHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~-~vA~~l~~a~g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~  241 (342)
                      .+|||||+|.||+ .+++.+.+.-++++ .++|++.... +.+.+.++       ........+.+++++++  +.|+|+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~a~~~g-------~~~~~~~~~~~~~~ll~~~~vD~V~  155 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKA-KIVAAEYG-------VDPRKIYDYSNFDKIAKDPKIDAVY  155 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHH-HHHHHHTT-------CCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHhC-------CCcccccccCCHHHHhcCCCCCEEE
Confidence            5899999999997 88888632236775 4789886542 22222221       11000113568999997  799999


Q ss_pred             EcCCC
Q 019328          242 LHPVL  246 (342)
Q Consensus       242 l~lpl  246 (342)
                      +++|.
T Consensus       156 iatp~  160 (433)
T 1h6d_A          156 IILPN  160 (433)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            99993

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.11  E-value=0.032  Score=50.97  Aligned_cols=82  Identities=12%  Similarity=0.128  Sum_probs=49.8

Q ss_pred             ccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ++.||++-|+| .|.||+.+++.| ...|++|+.++|+..+. ++..+.+... ..............+++++++++|+|
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L-~~~G~~V~i~~R~~~~~-~~l~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~Dvl  192 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKA-QAAADSVNKR-FKVNVTAAETADDASRAEAVKGAHFV  192 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHH-HTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCHHHH-HHHHHHHHhc-CCcEEEEecCCCHHHHHHHHHhCCEE
Confidence            56789999999 999999999998 47899999999986432 2221111100 00000000000112345667778888


Q ss_pred             EEcCCC
Q 019328          241 SLHPVL  246 (342)
Q Consensus       241 ~l~lpl  246 (342)
                      +.+.+.
T Consensus       193 Vn~ag~  198 (287)
T 1lu9_A          193 FTAGAI  198 (287)
T ss_dssp             EECCCT
T ss_pred             EECCCc
Confidence            888763

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.11  E-value=0.0058  Score=59.95  Aligned_cols=76  Identities=9%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV~  241 (342)
                      .+++|+|+|.|.||+.+++.|+ ..|.+|.++||+..+. +.....++      .....  ......+++++++.+|+|+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~-~~G~~V~v~~R~~~~a-~~la~~~~------~~~~~~~Dv~d~~~l~~~l~~~DvVI   73 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLSAGVQ------HSTPISLDVNDDAALDAEVAKHDLVI   73 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESSHHHH-HHTTTTCT------TEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCcCEEEEEECCHHHH-HHHHHhcC------CceEEEeecCCHHHHHHHHcCCcEEE
Confidence            4789999999999999999984 6889999999986532 11111000      00000  0011124667888999999


Q ss_pred             EcCCCC
Q 019328          242 LHPVLD  247 (342)
Q Consensus       242 l~lplt  247 (342)
                      .+.|..
T Consensus        74 n~a~~~   79 (450)
T 1ff9_A           74 SLIPYT   79 (450)
T ss_dssp             ECCC--
T ss_pred             ECCccc
Confidence            999954

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.10  E-value=0.013  Score=51.31  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCC-CCccccccCCHHHHhhcCC
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~sD  238 (342)
                      ..+.|++|.|.|. |.||+.+++.|+ .-|.+|++.+|+...... ...        .+. .........++.+.+..+|
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~-~~G~~V~~~~R~~~~~~~-~~~--------~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELK-NKGHEPVAMVRNEEQGPE-LRE--------RGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSGGGHHH-HHH--------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHH-hCCCeEEEEECChHHHHH-HHh--------CCCceEEEcccHHHHHHHHcCCC
Confidence            5799999999998 999999999984 679999999998764221 110        011 0000000156778889999


Q ss_pred             EEEEcCCCC
Q 019328          239 VISLHPVLD  247 (342)
Q Consensus       239 iV~l~lplt  247 (342)
                      +|+.+....
T Consensus        87 ~vi~~ag~~   95 (236)
T 3e8x_A           87 AVVFAAGSG   95 (236)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999887654

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.10  E-value=0.073  Score=49.75  Aligned_cols=107  Identities=17%  Similarity=0.126  Sum_probs=67.4

Q ss_pred             ccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|++|++||=| ++.++.+..+ ..||++|.+..|..-...+...+......+..+   .......++++.++++|+|
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvv  227 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVL  227 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CcCCcEEEEECCchhhHHHHHHHH-HHcCCeEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhccCCEE
Confidence            4889999999985 4777777765 579999999987532101111110000000011   1223357899999999999


Q ss_pred             EEcC----CCCccc--------ccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHP----VLDKTT--------YHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~l----plt~~t--------~~li~~~~l~~mk~gailIN~s  272 (342)
                      ..-+    ....+.        .--++.+.++.+||+++|.-+.
T Consensus       228 y~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          228 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             EEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence            9843    211111        1346899999999999998875

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.08  E-value=0.012  Score=54.34  Aligned_cols=105  Identities=17%  Similarity=0.122  Sum_probs=65.2

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV  240 (342)
                      .++|+|+|. |++|+.+++.+ +..|++++ ..+|.....                 .-.+...+.+++++.+  ..|++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l-~~~g~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~Dv~   68 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGGM-----------------EVLGVPVYDTVKEAVAHHEVDAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHH-HHcCCeEEEEECCCCCCc-----------------eECCEEeeCCHHHHhhcCCCCEE
Confidence            468999999 99999999987 56788843 566643100                 0012334578999998  89999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHHHHcCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~aL~~g~i  291 (342)
                      ++++|- +.+...+ ++..+. +-. .+|..+.|=. -+++.|.++.++..+
T Consensus        69 Ii~vp~-~~~~~~~-~ea~~~-Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi  116 (288)
T 1oi7_A           69 IIFVPA-PAAADAA-LEAAHA-GIP-LIVLITEGIPTLDMVRAVEEIKALGS  116 (288)
T ss_dssp             EECCCH-HHHHHHH-HHHHHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCH-HHHHHHH-HHHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999992 2233332 222221 222 2444555522 345678888877655

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.07  E-value=0.015  Score=54.92  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=25.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d  196 (342)
                      .+|||+|+|+||+.++|.+...-+++|.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            4899999999999999987544568877554

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.07  E-value=0.026  Score=55.30  Aligned_cols=98  Identities=14%  Similarity=0.169  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 g~~l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||...+....   .|+.          ......+
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~~----------~~~~~~~  378 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKL-LEVGCRVRVYDPVAMKEAQK---RLGD----------KVEYTTD  378 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSCHHHHHH---HHGG----------GSEECSS
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCcHHHHH---hcCc----------cceecCC
Confidence            346899999999984          3467889987 68999999999997532111   1110          1123468


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHhHH-ccCCCCcEEEecCCCc
Q 019328          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGP  275 (342)
Q Consensus       230 l~ell~~sDiV~l~lplt~~t~~li~~~~l-~~mk~gailIN~sRG~  275 (342)
                      +++.++.+|.|+++++- ++-+. ++-+.+ +.|+ +.+++++ |+-
T Consensus       379 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          379 MYDAVRGAEALFHVTEW-KEFRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             HHHHTTTCSCEEECSCC-GGGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             HHHHhcCCCEEEEccCC-HHHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            89999999999999873 33333 344444 4466 5688885 543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.06  E-value=0.013  Score=56.23  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=49.7

Q ss_pred             CCEEEEEccCh---HHHHHHHHHHhcCCcEEE--EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc---
Q 019328          165 GQTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---  236 (342)
Q Consensus       165 gktvGIiG~G~---IG~~vA~~l~~a~g~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  236 (342)
                      -.+|||||+|.   ||+..+..+...-++++.  ++|+++... +.+.+.++       ...  ...+.+++++++.   
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~g-------~~~--~~~~~~~~~ll~~~~~   81 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRG-SAFGEQLG-------VDS--ERCYADYLSMFEQEAR   81 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHH-HHHHHHTT-------CCG--GGBCSSHHHHHHHHTT
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHH-HHHHHHhC-------CCc--ceeeCCHHHHHhcccc
Confidence            36899999999   999998876433347776  479987642 22222222       110  1245799999975   


Q ss_pred             ----CCEEEEcCCCC
Q 019328          237 ----ADVISLHPVLD  247 (342)
Q Consensus       237 ----sDiV~l~lplt  247 (342)
                          .|+|++++|..
T Consensus        82 ~~~~vD~V~i~tp~~   96 (398)
T 3dty_A           82 RADGIQAVSIATPNG   96 (398)
T ss_dssp             CTTCCSEEEEESCGG
T ss_pred             cCCCCCEEEECCCcH
Confidence                89999999943

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.05  E-value=0.0085  Score=56.43  Aligned_cols=68  Identities=16%  Similarity=0.258  Sum_probs=45.5

Q ss_pred             CEEEEEccChHHH-HHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEE
Q 019328          166 QTVGVIGAGRIGS-AYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG~-~vA~~l~~a~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV  240 (342)
                      .+|||||+|.||+ ..++.+ +.. +++|. ++|++..   +.+.+.++.         .+...+.+++++++.  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~---~~~a~~~~~---------~~~~~~~~~~~ll~~~~~D~V   69 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYV-MIRETLEVKTIFDLHVN---EKAAAPFKE---------KGVNFTADLNELLTDPEIELI   69 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECTTCC---HHHHHHHHT---------TTCEEESCTHHHHSCTTCCEE
T ss_pred             eEEEEEccCHHHHHHHHHHH-hhCCCeEEEEEECCCHH---HHHHHhhCC---------CCCeEECCHHHHhcCCCCCEE
Confidence            4799999999999 567765 444 78875 6787722   122222110         012345799999986  8999


Q ss_pred             EEcCCC
Q 019328          241 SLHPVL  246 (342)
Q Consensus       241 ~l~lpl  246 (342)
                      ++++|.
T Consensus        70 ~i~tp~   75 (349)
T 3i23_A           70 TICTPA   75 (349)
T ss_dssp             EECSCG
T ss_pred             EEeCCc
Confidence            999994

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.05  E-value=0.015  Score=54.64  Aligned_cols=105  Identities=17%  Similarity=0.289  Sum_probs=60.0

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHH--HhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKF--VTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ...++|+|||.|.+|..+|..|+ ..|. +|..||+.+.......  ......+.   . .+.......+. +.++.||+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~-~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~---~-~~~~v~~t~d~-~a~~~aDi   78 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAG-LKELGDVVLFDIAEGTPQGKGLDIAESSPVD---G-FDAKFTGANDY-AAIEGADV   78 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHHHHHHH---T-CCCCEEEESSG-GGGTTCSE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCchhHHHHHHHHhchhhhc---C-CCCEEEEeCCH-HHHCCCCE
Confidence            34679999999999999999874 4455 9999999875421110  00000000   0 01111112344 78899999


Q ss_pred             EEEcCCCC--cc-ccc-cc--CH-------hHHccCCCCcEEEecCC
Q 019328          240 ISLHPVLD--KT-TYH-LI--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       240 V~l~lplt--~~-t~~-li--~~-------~~l~~mk~gailIN~sR  273 (342)
                      |+++.+..  +. |+. ++  |.       +.+....|++++++++-
T Consensus        79 VIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           79 VIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             EEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            99996522  11 221 11  11       12333458999999985

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.04  E-value=0.023  Score=55.18  Aligned_cols=118  Identities=16%  Similarity=0.212  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCCh--------------hhHHHHHHhhhhhhhccCCCCCccc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ--------------ATRLEKFVTAYGQFLKANGEQPVTW  224 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  224 (342)
                      |.++.|+||.|.|+|++|+.+|+.| ...|++|+ +.|.+.              .....+..+..+..      .....
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i------~~~~~  279 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNI-ERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTL------IGFPG  279 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHH-HHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCc------ccCCC
Confidence            3478999999999999999999997 68999998 445551              01122221111100      00000


Q ss_pred             cccCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          225 KRASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       225 ~~~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ....+.++++ ..||+++-|..     .+.|+.+....++ ..+++-.+-|++- .++ .+.|.+..+.
T Consensus       280 a~~i~~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~ea-~~il~~~GI~  340 (421)
T 2yfq_A          280 AERITDEEFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PEG-DKVLTERGIN  340 (421)
T ss_dssp             ---------------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HHH-HHHHHHHTCE
T ss_pred             ceEeCccchhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HHH-HHHHHHCCCE
Confidence            0111223333 46999988854     5568888888884 6688888888864 333 3445554443

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.04  E-value=0.017  Score=56.41  Aligned_cols=120  Identities=14%  Similarity=0.129  Sum_probs=70.8

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEc--------CChh--hHHHHHHhh-------hhhhhccCCCCCcc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTA-------YGQFLKANGEQPVT  223 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d--------~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~  223 (342)
                      .++.||||.|=|+|++|..+|+.| ...|++|++.+        +.--  .......+.       ...+....+     
T Consensus       231 ~~l~Gk~vaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g-----  304 (450)
T 4fcc_A          231 MGFEGMRVSVSGSGNVAQYAIEKA-MEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFG-----  304 (450)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHT-----
T ss_pred             CCcCCCEEEEeCCChHHHHHHHHH-HhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCC-----
Confidence            479999999999999999999997 68999998754        2210  011111000       000000000     


Q ss_pred             ccccCCHHHH-hhcCCEEEEcCCCCcccccccCHhHHccCCCC--cEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          224 WKRASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKE--AILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       224 ~~~~~~l~el-l~~sDiV~l~lplt~~t~~li~~~~l~~mk~g--ailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      ... .+-+++ -..||+.+-|     .+.+.|+.+...+++.+  .++++-+-+.+-.+ + .+.|.+..|.-+
T Consensus       305 ~~~-~~~~~i~~~~~DI~iPc-----Al~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl~~  370 (450)
T 4fcc_A          305 LVY-LEGQQPWSVPVDIALPC-----ATQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVLFA  370 (450)
T ss_dssp             CEE-EETCCGGGSCCSEEEEC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCEEE
T ss_pred             cEE-ecCcccccCCccEEeec-----cccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCEEE
Confidence            000 011111 2469998877     45677888888888754  57888888876433 3 355666655443

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.03  E-value=0.0083  Score=56.65  Aligned_cols=104  Identities=15%  Similarity=0.229  Sum_probs=63.5

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh------------------hHHHHHHhhhhhhhccCCCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|+..-                  ...+...+.....   .....
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La-~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i---nP~v~  105 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI---FPLMD  105 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH---CTTCE
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh---CCCCE
Confidence            4689999999999999999999985 6675 6888886430                  0111111110000   00000


Q ss_pred             cccc-------------------ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          222 VTWK-------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       222 ~~~~-------------------~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      ....                   ...+++++++++|+|+.++- +.+|+.+++..-.+.   +..+|+.+
T Consensus       106 v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~~---~~plI~aa  171 (340)
T 3rui_A          106 ATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  171 (340)
T ss_dssp             EEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHHc---CCcEEEee
Confidence            0000                   01235678999999999986 567898887766543   44566643

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.02  E-value=0.0058  Score=53.86  Aligned_cols=67  Identities=15%  Similarity=0.191  Sum_probs=44.9

Q ss_pred             CEEEEEccChHHHHHHHHH-HhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMM-VEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l-~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sDiV~l  242 (342)
                      ++++|+|.|.+|+.+++.+ ... |+++. ++|.++.....             ...+.......+++++++ +.|+|++
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~-------------~i~gv~V~~~~dl~ell~~~ID~ViI  146 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGR-------------PVRGGVIEHVDLLPQRVPGRIEIALL  146 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTC-------------EETTEEEEEGGGHHHHSTTTCCEEEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhh-------------hhcCCeeecHHhHHHHHHcCCCEEEE
Confidence            5799999999999999852 134 88866 55776543100             001112223567889886 5899999


Q ss_pred             cCCC
Q 019328          243 HPVL  246 (342)
Q Consensus       243 ~lpl  246 (342)
                      |+|.
T Consensus       147 A~Ps  150 (211)
T 2dt5_A          147 TVPR  150 (211)
T ss_dssp             CSCH
T ss_pred             eCCc
Confidence            9993

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.99  E-value=0.031  Score=51.03  Aligned_cols=40  Identities=25%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .++.||++-|.|- |.||+.+|++|+ ..|++|+..+++...
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFA-KEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            4689999999997 889999999984 779999999987653

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.98  E-value=0.0087  Score=59.08  Aligned_cols=128  Identities=14%  Similarity=0.240  Sum_probs=72.0

Q ss_pred             CCEEEEEccChH-HHHHHHHHHh---cC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       165 gktvGIiG~G~I-G~~vA~~l~~---a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ..+|+|||.|.. |..+|..|++   ++ +-+|..||+...... ...+.....+.. ...+.......++++.++.||+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~-~~~~~~~~~l~~-~~~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQD-RIAGACDVFIRE-KAPDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHH-HHHHHHHHHHHH-HCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHH-HHHHHHHHHhcc-CCCCCEEEEECCHHHHHcCCCE
Confidence            469999999998 6667655443   45 668999999875421 111100001011 0112222334688899999999


Q ss_pred             EEEcCCCCcc---cc--------ccc--------------------C--HhHHccCCCCcEEEecCCCccCCHHHHHHHH
Q 019328          240 ISLHPVLDKT---TY--------HLI--------------------N--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       240 V~l~lplt~~---t~--------~li--------------------~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL  286 (342)
                      |++++|....   ++        +++                    -  .+.+....|++++||++---=+-+.++.+..
T Consensus       106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~  185 (472)
T 1u8x_X          106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR  185 (472)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS
T ss_pred             EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999985210   11        111                    0  1234445689999999875533334444433


Q ss_pred             HcCCccEE
Q 019328          287 KQNPMFRV  294 (342)
Q Consensus       287 ~~g~i~ga  294 (342)
                      ...++.|.
T Consensus       186 p~~rViG~  193 (472)
T 1u8x_X          186 PNSKILNI  193 (472)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEEEe
Confidence            23355555

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.98  E-value=0.0068  Score=54.72  Aligned_cols=103  Identities=20%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh------------------hHHHHHHhhhhhhhccCCCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..-                  .+.+...+.+...   .....
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~~~   99 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQL---NPDIQ   99 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH---CTTSE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHH---CCCCE
Confidence            4689999999999999999999985 6676 7888876531                  0111111111000   00000


Q ss_pred             cccc----ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          222 VTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       222 ~~~~----~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      +...    ...+++++++++|+|+.+.+ +.+++.++++...+.   +.-+|..
T Consensus       100 v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~  149 (251)
T 1zud_1          100 LTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITA  149 (251)
T ss_dssp             EEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEE
T ss_pred             EEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEE
Confidence            0000    01246678899999999987 677888888776653   3335554

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.97  E-value=0.014  Score=53.52  Aligned_cols=97  Identities=21%  Similarity=0.288  Sum_probs=57.8

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|+| +|+||+.+++.+...-++++.+ +|++......   ...++..   +... +.....+++++++++|+|+-+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G---~d~gel~---g~~~-gv~v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG---QDAGAFL---GKQT-GVALTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT---SBTTTTT---TCCC-SCBCBCCHHHHHHHCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc---ccHHHHh---CCCC-CceecCCHHHHhcCCCEEEEc
Confidence            5899999 9999999999875566888776 6876432100   0000000   1011 233457999999999999988


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .+  |+...   +-....++.|.-+|-...|
T Consensus        81 T~--p~a~~---~~~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           81 TL--PEGTL---VHLDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             SC--HHHHH---HHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHHH---HHHHHHHHcCCCEEEECCC
Confidence            76  43211   1111223445556655556

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.97  E-value=0.037  Score=51.77  Aligned_cols=126  Identities=16%  Similarity=0.237  Sum_probs=67.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++|+|||.|.+|..+|..|+ .-|. +|..+|..+.... .............. .........+ .+.++.||+|++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~-~~~~~~v~l~Di~~~~~~-g~a~dL~~~~~~~~-~~~~v~~t~d-~~a~~~aDvVIi   79 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLAL-IKQLGDVVLFDIAQGMPN-GKALDLLQTCPIEG-VDFKVRGTND-YKDLENSDVVIV   79 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHH-HHHHHHHTTHHHHT-CCCCEEEESC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCChHHHH-HHHHHHHhhhhhcC-CCcEEEEcCC-HHHHCCCCEEEE
Confidence            3578999999999999999874 3344 9999999875421 11111100000000 0111111223 468899999999


Q ss_pred             cCCCC--c-cccc-cc--CH-------hHHccCCCCcEEEecCCCccCCHH--HHHHH--HHcCCccEEE
Q 019328          243 HPVLD--K-TTYH-LI--NK-------ERLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRVG  295 (342)
Q Consensus       243 ~lplt--~-~t~~-li--~~-------~~l~~mk~gailIN~sRG~~vd~~--aL~~a--L~~g~i~gaa  295 (342)
                      +.+..  | .|+. ++  |.       +.+....|++++++++  .++|.-  .+.+.  +...++.|.+
T Consensus        80 ~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~~~~k~sg~p~~rviG~~  147 (321)
T 3p7m_A           80 TAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMVNMLQKFSGVPDNKIVGMA  147 (321)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred             cCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHHHHHHHhcCCCHHHEEeec
Confidence            96422  2 1221 11  11       2233345899999995  444443  23232  2224566665

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.94  E-value=0.0067  Score=56.42  Aligned_cols=99  Identities=15%  Similarity=0.229  Sum_probs=55.9

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .++|+|||.|.+|..+|..++ .-|.  +|..+|.... ....-.+ ... .   .....  ....++ +.++.||+|++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~-~~g~~~ev~L~Di~~~-~~g~a~d-l~~-~---~~~~i--~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAIS-AKGIADRLVLLDLSEG-TKGATMD-LEI-F---NLPNV--EISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECCC------CHHH-HHH-H---TCTTE--EEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEcCCcc-hHHHHHH-Hhh-h---cCCCe--EEeCCH-HHHCCCCEEEE
Confidence            378999999999999998875 3345  9999999864 1111001 100 0   00111  122566 66899999999


Q ss_pred             cCCCCc--cccccc---C----Hh---HHccCCCCcEEEecCC
Q 019328          243 HPVLDK--TTYHLI---N----KE---RLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lplt~--~t~~li---~----~~---~l~~mk~gailIN~sR  273 (342)
                      +.....  +|+.-+   |    .+   .+....|++++++++-
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            973211  111100   0    11   2223348999999877

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.91  E-value=0.022  Score=53.22  Aligned_cols=123  Identities=15%  Similarity=0.156  Sum_probs=66.5

Q ss_pred             CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|.+|..++..++. ...-++..+|...+.. +...........  -..+....  .+..+.++.||+|+++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~-~g~~~dl~~~~~--~~~~~~v~--~~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT-KGDALDLEDAQA--FTAPKKIY--SGEYSDCKDADLVVITA   80 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHGGGG--GSCCCEEE--ECCGGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHH-HHHHHHHHHHHH--hcCCeEEE--ECCHHHhCCCCEEEECC
Confidence            689999999999999988753 3333899999976432 211111111000  00111111  23456789999999997


Q ss_pred             CCCcccccc-----c--CH-------hHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEE
Q 019328          245 VLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRV  294 (342)
Q Consensus       245 plt~~t~~l-----i--~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~ga  294 (342)
                      +... ..++     +  |.       +.+....|++++++++---=+-...+.+.  +...++.|.
T Consensus        81 g~~~-~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           81 GAPQ-KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEec
Confidence            6432 2211     1  11       23344479999999843222223333333  333466666

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.90  E-value=0.019  Score=53.95  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             CCEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ..+|+|||.|.+|..++..++. ...-++..+|...... +...........  ...+....  .+..+.++.||+|+++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~-~g~~~dl~~~~~--~~~~~~i~--~~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKT-KGDAIDLSNALP--FTSPKKIY--SAEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHH-HHHHHHHHTTGG--GSCCCEEE--ECCGGGGGGCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHh-HHHHHHHHHHHH--hcCCeEEE--ECCHHHhCCCCEEEEc
Confidence            4689999999999999988742 3334899999976432 121111110000  00111111  2346678999999999


Q ss_pred             CCCCcccccc-------cCH-------hHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEE
Q 019328          244 PVLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRV  294 (342)
Q Consensus       244 lplt~~t~~l-------i~~-------~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~ga  294 (342)
                      .+... ..++       .|.       +.+....|++++++++---=+-...+.+.  +...++.|.
T Consensus        84 ag~~~-k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           84 AGAPQ-KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEc
Confidence            76432 2221       111       22333368999999843222223333333  333366666

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.90  E-value=0.023  Score=52.87  Aligned_cols=103  Identities=17%  Similarity=0.276  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+.|++|++||=   |++.++.+..+ ..||++|.+..|..-...+...+.    .+..+   .......++++.++++|
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~eav~~aD  223 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEE----LREKG---MKVVETTTLEDVIGKLD  223 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHHH----HHHTT---CCEEEESCTHHHHTTCS
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHH-HHCCCEEEEECCccccCCHHHHHH----HHHcC---CeEEEEcCHHHHhcCCC
Confidence            478999999998   48999999986 689999999988532111111110    11111   12233478999999999


Q ss_pred             EEEEcCCCCc------cc-----ccccCHhHHccCCCCcEEEecC
Q 019328          239 VISLHPVLDK------TT-----YHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       239 iV~l~lplt~------~t-----~~li~~~~l~~mk~gailIN~s  272 (342)
                      +|..-.-..+      +-     .--++.+.++.+||+++|.-+.
T Consensus       224 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          224 VLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             EEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            9988653221      11     1235778888888888887764

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.90  E-value=0.021  Score=55.15  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=48.1

Q ss_pred             CEEEEEccCh---HHHHHHHHHHhcCCcEEE--EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc----
Q 019328          166 QTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----  236 (342)
Q Consensus       166 ktvGIiG~G~---IG~~vA~~l~~a~g~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----  236 (342)
                      .+|||||+|.   ||+..+..+...-++++.  ++|+++... +.+.+.++       ...  ...+.+++++++.    
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~g-------~~~--~~~~~~~~~ll~~~~~~  107 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKA-EASGRELG-------LDP--SRVYSDFKEMAIREAKL  107 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHH-HHHHHHHT-------CCG--GGBCSCHHHHHHHHHHC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHH-HHHHHHcC-------CCc--ccccCCHHHHHhccccc
Confidence            5899999999   999988876333347765  579887542 33333332       110  1245799999986    


Q ss_pred             ---CCEEEEcCCCC
Q 019328          237 ---ADVISLHPVLD  247 (342)
Q Consensus       237 ---sDiV~l~lplt  247 (342)
                         .|+|+++.|..
T Consensus       108 ~~~vD~V~I~tp~~  121 (417)
T 3v5n_A          108 KNGIEAVAIVTPNH  121 (417)
T ss_dssp             TTCCSEEEECSCTT
T ss_pred             CCCCcEEEECCCcH
Confidence               89999999943

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.88  E-value=0.021  Score=53.50  Aligned_cols=68  Identities=16%  Similarity=0.256  Sum_probs=48.5

Q ss_pred             CEEEEEccC-hHHHHHHHHHHhcC--CcEE-EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCE
Q 019328          166 QTVGVIGAG-RIGSAYARMMVEGF--KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       166 ktvGIiG~G-~IG~~vA~~l~~a~--g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDi  239 (342)
                      .++||||+| .+|+..++.+ +..  ++++ .++|+++... +.+.+.++       .    ...+.+++++++  +.|+
T Consensus        19 irvgiIG~G~~~g~~~~~~l-~~~~~~~~lvav~d~~~~~~-~~~a~~~~-------~----~~~~~~~~~ll~~~~vD~   85 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMVG-------N----PAVFDSYEELLESGLVDA   85 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHHS-------S----CEEESCHHHHHHSSCCSE
T ss_pred             eeEEEEecCHHHHHHHHHHH-HhCCCceEEEEEEcCCHHHH-HHHHHHhC-------C----CcccCCHHHHhcCCCCCE
Confidence            489999999 8999999987 454  5776 4788887542 33333332       0    123579999996  5899


Q ss_pred             EEEcCCC
Q 019328          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~lpl  246 (342)
                      |++++|.
T Consensus        86 V~i~tp~   92 (340)
T 1zh8_A           86 VDLTLPV   92 (340)
T ss_dssp             EEECCCG
T ss_pred             EEEeCCc
Confidence            9999993

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.87  E-value=0.01  Score=56.01  Aligned_cols=69  Identities=12%  Similarity=0.120  Sum_probs=45.8

Q ss_pred             CEEEEEccChHHHHHHHHHHh--c-----CCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc-
Q 019328          166 QTVGVIGAGRIGSAYARMMVE--G-----FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-  236 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~--a-----~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-  236 (342)
                      -+|||||+|.||+.-++.+++  .     .+++|. ++|+++... +.+.+.++.           ...+.+++++++. 
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a-~~~a~~~g~-----------~~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAV-RAAAGKLGW-----------STTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHH-HHHHHHHTC-----------SEEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHH-HHHHHHcCC-----------CcccCCHHHHhcCC
Confidence            489999999999987776521  1     134554 678887542 333333321           1235789999964 


Q ss_pred             -CCEEEEcCCC
Q 019328          237 -ADVISLHPVL  246 (342)
Q Consensus       237 -sDiV~l~lpl  246 (342)
                       .|+|++++|.
T Consensus        75 ~iDaV~I~tP~   85 (390)
T 4h3v_A           75 DVQLVDVCTPG   85 (390)
T ss_dssp             TCSEEEECSCG
T ss_pred             CCCEEEEeCCh
Confidence             7899999993

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=95.87  E-value=0.023  Score=55.71  Aligned_cols=128  Identities=13%  Similarity=0.141  Sum_probs=72.7

Q ss_pred             CCEEEEEccChH-HHHHHHHHHh---cC-CcEEEEEcCCh--hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       165 gktvGIiG~G~I-G~~vA~~l~~---a~-g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ..+|+|||.|.. |..++..|++   .+ +-+|..||+..  ... +...+.....+.. ...+.......++.+.++.|
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~-~~~~~~~~~~~~~-~~~~~~i~~t~D~~eal~gA   84 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKL-EIVGALAKRMVEK-AGVPIEIHLTLDRRRALDGA   84 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHH-HHHHHHHHHHHHH-TTCCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHH-HHHHHHHHHHHhh-cCCCcEEEEeCCHHHHhCCC
Confidence            358999999999 8887665543   45 56899999987  432 1111100001111 11122233346888899999


Q ss_pred             CEEEEcCCCCcc---cc--------ccc--------------------C--HhHHccCCCCcEEEecCCCccCCHHHHHH
Q 019328          238 DVISLHPVLDKT---TY--------HLI--------------------N--KERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       238 DiV~l~lplt~~---t~--------~li--------------------~--~~~l~~mk~gailIN~sRG~~vd~~aL~~  284 (342)
                      |+|+++.|....   ++        +++                    -  .+.+....|++++||++---=+-+.++.+
T Consensus        85 D~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k  164 (450)
T 1s6y_A           85 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLR  164 (450)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Confidence            999999994321   11        111                    0  12344456899999998765444444444


Q ss_pred             HHHcCCccEE
Q 019328          285 HLKQNPMFRV  294 (342)
Q Consensus       285 aL~~g~i~ga  294 (342)
                      .....++.|.
T Consensus       165 ~~p~~rViG~  174 (450)
T 1s6y_A          165 YTKQEKVVGL  174 (450)
T ss_dssp             HCCCCCEEEC
T ss_pred             hCCCCCEEEe
Confidence            4322244444

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.86  E-value=0.0078  Score=58.38  Aligned_cols=39  Identities=21%  Similarity=0.452  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      -+.|++|+|+|-|.+|+.+++.+ +.+|.+|+++|+++..
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa-~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAA-QSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCcC
Confidence            46899999999999999999985 7999999999987653

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.86  E-value=0.011  Score=55.36  Aligned_cols=92  Identities=17%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.++++++..  +..+++       .... .   .+.+++.+..|+|+-+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~~~~lG-------a~~v-~---~~~~~~~~~~D~vid~  241 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARNEHKKQ--DALSMG-------VKHF-Y---TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSSSTTHH--HHHHTT-------CSEE-E---SSGGGCCSCEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHH--HHHhcC-------CCee-c---CCHHHHhcCCCEEEEC
Confidence            478999999999999999985 899999999998876532  112222       1110 0   2223333378999988


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      +....     .-...++.++++..++.++..
T Consensus       242 ~g~~~-----~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          242 IPTHY-----DLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             CCSCC-----CHHHHHTTEEEEEEEEECCCC
T ss_pred             CCcHH-----HHHHHHHHHhcCCEEEEECCC
Confidence            77432     224567788888888888643

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=95.84  E-value=0.04  Score=53.44  Aligned_cols=118  Identities=18%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCCh---------hhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      |.++.|+||.|-|+|++|+.+|+.| ...|++|+ +.|.+-         .....++.+..+      ...... ....+
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l-~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g------~i~~~~-a~~~~  287 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFM-HDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFG------MVTNLF-TDVIT  287 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHH-HHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSS------CCGGGC-SCCBC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhC------CCCCCC-cEEec
Confidence            3579999999999999999999997 67899986 445541         111111111000      000000 11234


Q ss_pred             HHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       230 l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      .++++ ..||+++-|-.     .+.|+.+....++ -.+++-.+-+++- . +-.+.|.+..|.-
T Consensus       288 ~~~i~~~~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t-~-eA~~iL~~rGI~~  344 (424)
T 3k92_A          288 NEELLEKDCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT-I-DATKILNERGVLL  344 (424)
T ss_dssp             HHHHHHSCCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC-H-HHHHHHHHTTCEE
T ss_pred             CccceeccccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC-H-HHHHHHHHCCCEE
Confidence            55654 56999987754     5678888888884 5678888888863 3 3356677666533

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.83  E-value=0.047  Score=50.85  Aligned_cols=109  Identities=18%  Similarity=0.312  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|++|+++|=   |++.++.+..+ ..| |++|.+..|..-...+...+.    .+..+   .......++++.++++
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~eav~~a  222 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILDM----LDEKG---IAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHHH----HHHTT---CCEEECSCGGGTTTTC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCcccccCHHHHHH----HHHcC---CeEEEEcCHHHHhcCC
Confidence            478999999998   59999999997 688 999999987532111111110    11111   1223357899999999


Q ss_pred             CEEEEcCCCCc----cc------ccccCHhHHccCCCCcEEEecC-CCccCC
Q 019328          238 DVISLHPVLDK----TT------YHLINKERLATMKKEAILVNCS-RGPVID  278 (342)
Q Consensus       238 DiV~l~lplt~----~t------~~li~~~~l~~mk~gailIN~s-RG~~vd  278 (342)
                      |+|..-.-..+    +.      .--++.+.++.+||+++|.-+. ||.=|+
T Consensus       223 Dvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~  274 (310)
T 3csu_A          223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIA  274 (310)
T ss_dssp             SEEEECC-----------------CCBCGGGGTTCCTTCEEECCSCCSSSBC
T ss_pred             CEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCCeec
Confidence            99988754221    11      1346888999999999988775 544343

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.82  E-value=0.015  Score=54.79  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=25.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      .+|||+|+|.||+.+.|.|...-.++|.+.+..
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~~   34 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            379999999999999998743346788766543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.82  E-value=0.014  Score=54.21  Aligned_cols=67  Identities=10%  Similarity=0.051  Sum_probs=46.9

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---------
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (342)
                      .++||||+ |.||+..++.+ +..+.++. ++|+++...  .....+           .....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~~~-----------~~~~~~~~~~~ll~~~~~l~~~   69 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVG--LVDSFF-----------PEAEFFTEPEAFEAYLEDLRDR   69 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGGTC-----------TTCEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHhhC-----------CCCceeCCHHHHHHHhhhhccc
Confidence            58999999 78999999987 56688755 678876531  110000           0123457888888         


Q ss_pred             -hcCCEEEEcCCC
Q 019328          235 -READVISLHPVL  246 (342)
Q Consensus       235 -~~sDiV~l~lpl  246 (342)
                       .+.|+|+++.|.
T Consensus        70 ~~~vD~V~I~tP~   82 (312)
T 3o9z_A           70 GEGVDYLSIASPN   82 (312)
T ss_dssp             TCCCSEEEECSCG
T ss_pred             CCCCcEEEECCCc
Confidence             678999999993

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.81  E-value=0.017  Score=57.13  Aligned_cols=98  Identities=16%  Similarity=0.284  Sum_probs=68.2

Q ss_pred             cccCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      ..+.|++|+|+|+-          .=...+++.| ...|++|.+|||....        +         ...  ....++
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~g~~V~~~DP~~~~--------~---------~~~--~~~~~~  408 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC-LKAGASVMVHDPYVVN--------Y---------PGV--EISDNL  408 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH-HHHTCEEEEECSSCCC--------B---------TTB--CEESCH
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH-HHCCCEEEEECCCccc--------c---------cCc--ceecCH
Confidence            46899999999984          2357888987 6889999999998642        0         001  123688


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHh-HHccCC-CCcEEEecCCCccCCHHHH
Q 019328          231 DEVLREADVISLHPVLDKTTYHLINKE-RLATMK-KEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       231 ~ell~~sDiV~l~lplt~~t~~li~~~-~l~~mk-~gailIN~sRG~~vd~~aL  282 (342)
                      ++.++.||.|+++++- ++-+. ++-+ ..+.|+ ++.+++++ |+- +|.+.+
T Consensus       409 ~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          409 EEVVRNADAIVVLAGH-SAYSS-LKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             HHHHTTCSEEEECSCC-HHHHS-CCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             HHHHhcCCEEEEecCC-HHHHh-hhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            9999999999999873 33333 3443 445677 47899994 554 455443

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.80  E-value=0.024  Score=53.54  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=44.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCC-----CccccccCCHHHHhhcCCE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQ-----PVTWKRASSMDEVLREADV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~~sDi  239 (342)
                      .+|||+|+|.||+.+++.+...-++++.+ .|+++...... ....+.........     ..+.....+++++++++|+
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~-a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDv   80 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFI-AHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI   80 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHH-HHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHH-HHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCE
Confidence            37999999999999999875334677664 46553321111 11000000000000     0001112356777788999


Q ss_pred             EEEcCCCC
Q 019328          240 ISLHPVLD  247 (342)
Q Consensus       240 V~l~lplt  247 (342)
                      |+.|+|..
T Consensus        81 V~~aTp~~   88 (340)
T 1b7g_O           81 VVDTTPNG   88 (340)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCCc
Confidence            99999854

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.80  E-value=0.0069  Score=57.35  Aligned_cols=95  Identities=14%  Similarity=0.157  Sum_probs=63.5

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHh---
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL---  234 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell---  234 (342)
                      .+.|++|.|+|.|.||..+++.+ +.+|++|++.+++.   ++.  ++...++..       .. . .. ++ +++.   
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~--~~~~~~ga~-------~v-~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLF-RTYGLEVWMANRREPTEVEQ--TVIEETKTN-------YY-N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHH-HHHTCEEEEEESSCCCHHHH--HHHHHHTCE-------EE-E-CT-TCSHHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCccchHHH--HHHHHhCCc-------ee-c-hH-HHHHHHHHhC
Confidence            57799999999999999999985 78999999999876   432  222222210       00 0 00 11 1121   


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ...|+|+.++......   + ...++.|+++..+|+++-
T Consensus       245 ~~~d~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          245 GKFDVIIDATGADVNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCEEEEEECCCCCTHH---H-HHHGGGEEEEEEEEECSC
T ss_pred             CCCCEEEECCCChHHH---H-HHHHHHHhcCCEEEEEec
Confidence            3589999998743321   0 456788899999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.79  E-value=0.017  Score=56.49  Aligned_cols=120  Identities=18%  Similarity=0.101  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc-CCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-sDiV  240 (342)
                      ++.||+|.|||+|..|.++|+.| ...|++|.++|....... ...+    .++..+.   ....-...++++.. +|+|
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l-~~~G~~V~~~D~~~~~~~-~~~~----~L~~~gi---~~~~g~~~~~~~~~~~d~v   76 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLL-AKLGAIVTVNDGKPFDEN-PTAQ----SLLEEGI---KVVCGSHPLELLDEDFCYM   76 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHH-HHTTCEEEEEESSCGGGC-HHHH----HHHHTTC---EEEESCCCGGGGGSCEEEE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEeCCcccCC-hHHH----HHHhCCC---EEEECCChHHhhcCCCCEE
Confidence            57899999999999999999997 689999999998653110 0000    1111121   11111223456666 8999


Q ss_pred             EEc--CCCC-ccc-----c--cccCH-hHHcc-CCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          241 SLH--PVLD-KTT-----Y--HLINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       241 ~l~--lplt-~~t-----~--~li~~-~~l~~-mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      ++.  +|.+ |+.     +  .++++ +.+.. ++...+-|-=+.|..--..-+...|+...
T Consensus        77 v~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           77 IKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             EECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             EECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            886  4322 211     1  13443 33333 34333444445787776777777787644

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.79  E-value=0.014  Score=55.65  Aligned_cols=93  Identities=13%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      -.++-|+|.|.+|+++|+.+ +.+|++|.++|+++...                          + .+-+..+|-++...
T Consensus       199 ~~~L~I~GaGhva~aLa~la-~~lgf~V~v~D~R~~~~--------------------------~-~~~fp~a~~v~~~~  250 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFA-SNVGFYTVVTDWRPNQC--------------------------E-KHFFPDADEIIVDF  250 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHH-HHHTEEEEEEESCGGGG--------------------------C-GGGCTTCSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCeEEEECCCcccc--------------------------c-cccCCCceEEecCC
Confidence            45799999999999999985 79999999999876421                          0 01134456555443


Q ss_pred             CCCcccccccCHhHHcc--CCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEe
Q 019328          245 VLDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       245 plt~~t~~li~~~~l~~--mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal  296 (342)
                      |          .+.+..  +.+++++|=+.++.-.|...|.++|++ .....|+
T Consensus       251 p----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~  293 (362)
T 3on5_A          251 P----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGI  293 (362)
T ss_dssp             H----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEE
T ss_pred             H----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEE
Confidence            3          223333  567888888888888898888888876 3444443

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.78  E-value=0.011  Score=50.51  Aligned_cols=95  Identities=16%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHh-----hc
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL-----RE  236 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell-----~~  236 (342)
                      .|++|.|.| .|.||+.+++.+ +..|++|++.+++.+....  ....+       ..........+. +.+.     ..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~~~--~~~~g-------~~~~~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKREM--LSRLG-------VEYVGDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHHH--HHTTC-------CSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--HHHcC-------CCEEeeCCcHHHHHHHHHHhCCCC
Confidence            578999999 699999999986 6889999999987654211  11111       100000011122 2222     13


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .|+++.+..  .+    .....++.|+++..+|+++..
T Consensus       108 ~D~vi~~~g--~~----~~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          108 VDVVLNSLA--GE----AIQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             EEEEEECCC--TH----HHHHHHHTEEEEEEEEECSCG
T ss_pred             CeEEEECCc--hH----HHHHHHHHhccCCEEEEEcCC
Confidence            788887764  22    135677888888888888653

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.77  E-value=0.0084  Score=56.29  Aligned_cols=95  Identities=15%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh------c
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (342)
                      .|++|.|+|.|.||..+++.+ +.+|+ +|++.+++.++..  +..+++.       .........++.+.+.      .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~~--~~~~~Ga-------~~~~~~~~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVA-KASGAYPVIVSEPSDFRRE--LAKKVGA-------DYVINPFEEDVVKEVMDITDGNG  236 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHHH--HHHHHTC-------SEEECTTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHhCC-------CEEECCCCcCHHHHHHHHcCCCC
Confidence            789999999999999999985 79999 9999999865422  1122221       0000011123433322      4


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+.++...+ +    -...++.++++..+++++.
T Consensus       237 ~D~vid~~g~~~-~----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          237 VDVFLEFSGAPK-A----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEEECSCCHH-H----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCCHH-H----HHHHHHHHhcCCEEEEEcc
Confidence            799998887322 1    2456777888889988864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.75  E-value=0.014  Score=54.52  Aligned_cols=96  Identities=11%  Similarity=0.157  Sum_probs=62.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh----hcCCE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----READV  239 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~~sDi  239 (342)
                      .|++|.|+|.|.||..+++.+ +.+|++|++.+++..+...  ..+++       ..........++.+.+    ...|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~~~lG-------a~~~~d~~~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLEL--AKELG-------ADLVVNPLKEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHHH--HHHTT-------CSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--HHHCC-------CCEEecCCCccHHHHHHHHhCCCCE
Confidence            478999999999999999985 7899999999988654321  11221       1000000112333222    46899


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+.++...+ +    -...++.|+++..++.++..
T Consensus       234 vid~~g~~~-~----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          234 AVVTAVSKP-A----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             EEESSCCHH-H----HHHHHHHEEEEEEEEECCCC
T ss_pred             EEECCCCHH-H----HHHHHHHhhcCCEEEEeccc
Confidence            998887322 1    24567788899899888753

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.74  E-value=0.015  Score=54.93  Aligned_cols=97  Identities=18%  Similarity=0.149  Sum_probs=62.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccC-CHHH-HhhcCCEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDE-VLREADVIS  241 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~e-ll~~sDiV~  241 (342)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++..+...  ...++       .......... ++.+ +....|+|+
T Consensus       179 ~g~~VlV~GaG~vG~~~~qla-k~~Ga~Vi~~~~~~~~~~~--~~~lG-------a~~v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKRED--AMKMG-------ADHYIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTHHH--HHHHT-------CSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHH--HHHcC-------CCEEEcCcCchHHHHHhhcCCCEEE
Confidence            478999999999999999985 7899999999987654321  11222       1100001111 3322 224689999


Q ss_pred             EcCCCC-cccccccCHhHHccCCCCcEEEecCCC
Q 019328          242 LHPVLD-KTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~lplt-~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .++..+ +++    -...++.++++..++.++..
T Consensus       249 d~~g~~~~~~----~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          249 VCASSLTDID----FNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             ECCSCSTTCC----TTTGGGGEEEEEEEEECCCC
T ss_pred             ECCCCCcHHH----HHHHHHHhcCCCEEEEecCC
Confidence            998752 111    23467778888888888643

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.68  E-value=0.041  Score=52.07  Aligned_cols=95  Identities=18%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccc-cCCHHHHhh-----
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~-----  235 (342)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.++++.+...  ..+++       .... .... ..++.+.+.     
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~~--~~~lG-------a~~vi~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDKFEK--AKVFG-------ATDFVNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHHH--HHHTT-------CCEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHH--HHHhC-------CceEEeccccchhHHHHHHHHhCC
Confidence            578999999999999999985 89999 89999987654321  12222       1100 0000 123444433     


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCC-cEEEecCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~g-ailIN~sR  273 (342)
                      ..|+|+-++...+ +    -...++.++++ ..++.++-
T Consensus       262 g~D~vid~~g~~~-~----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          262 GVDFSLECVGNVG-V----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CBSEEEECSCCHH-H----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCCHH-H----HHHHHHHhhcCCcEEEEEcC
Confidence            4799999887322 1    24578889998 88988874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.68  E-value=0.0041  Score=54.87  Aligned_cols=102  Identities=11%  Similarity=0.120  Sum_probs=62.1

Q ss_pred             cCCCEEEEEc-cChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCC
Q 019328          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREAD  238 (342)
Q Consensus       163 l~gktvGIiG-~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sD  238 (342)
                      ...|++.|.| .|.||+.+++.| ..-| .+|++++|++......         ........  ......+++++++.+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHKP---------YPTNSQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCSS---------CCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhccc---------ccCCcEEEEecCCCHHHHHHHhcCCC
Confidence            4568999999 699999999998 5778 8999999986542100         00000000  0111235677889999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCC--CcEEEecCCCcc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKK--EAILVNCSRGPV  276 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~--gailIN~sRG~~  276 (342)
                      +|+.+.......  ......+..|+.  ...||++|....
T Consensus        91 ~vv~~a~~~~~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           91 IVYANLTGEDLD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             EEEEECCSTTHH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             EEEEcCCCCchh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            999887643211  112334454532  247888887544

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.67  E-value=0.023  Score=53.76  Aligned_cols=77  Identities=25%  Similarity=0.327  Sum_probs=48.8

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +.+++|+|||. |.+|..+|..++ .+|  -+|..+|....+. +......    .+............+..+.++.||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~-~~g~~~evvLiDi~~~k~-~g~a~DL----~~~~~~~~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAA-MMRLTPNLCLYDPFAVGL-EGVAEEI----RHCGFEGLNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHH-HTTCCSCEEEECSCHHHH-HHHHHHH----HHHCCTTCCCEEESCHHHHHTTEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-hcCCCCEEEEEeCCchhH-HHHHHhh----hhCcCCCCceEEcCCHHHHhCCCCE
Confidence            45789999998 999999998763 455  4899999976432 1111111    1100011111223578888999999


Q ss_pred             EEEcCC
Q 019328          240 ISLHPV  245 (342)
Q Consensus       240 V~l~lp  245 (342)
                      |+++.-
T Consensus        80 VvitaG   85 (343)
T 3fi9_A           80 IVSSGG   85 (343)
T ss_dssp             EEECCC
T ss_pred             EEEccC
Confidence            999853

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.64  E-value=0.018  Score=53.55  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=69.4

Q ss_pred             cccCCCEEEEE-cc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--
Q 019328          161 NLLKGQTVGVI-GA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (342)
Q Consensus       161 ~~l~gktvGIi-G~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (342)
                      .-+..+++.|| |+ |++|+.+++.+ +.+|.+++ ..+|.....                 .-.+...+.+++++.+  
T Consensus         9 ~l~~~~siaVV~Gasg~~G~~~~~~l-~~~G~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~   70 (305)
T 2fp4_A            9 LYVDKNTKVICQGFTGKQGTFHSQQA-LEYGTNLVGGTTPGKGGK-----------------THLGLPVFNTVKEAKEQT   70 (305)
T ss_dssp             GCCCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHH
T ss_pred             HHhCCCcEEEEECCCCCHHHHHHHHH-HHCCCcEEEEeCCCcCcc-----------------eECCeeeechHHHhhhcC
Confidence            34677889999 99 99999999997 67888844 556642100                 0012334568999998  


Q ss_pred             cCCEEEEcCCCCccc-ccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHHHHcC-Ccc
Q 019328          236 EADVISLHPVLDKTT-YHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN-PMF  292 (342)
Q Consensus       236 ~sDiV~l~lplt~~t-~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~aL~~g-~i~  292 (342)
                      ..|++++++|  ++. ...+ ++.++. .-+ .+++.+-|-. -|+..+.+..++. .+.
T Consensus        71 ~vD~avI~vP--~~~~~~~~-~e~i~~-Gi~-~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           71 GATASVIYVP--PPFAAAAI-NEAIDA-EVP-LVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             CCCEEEECCC--HHHHHHHH-HHHHHT-TCS-EEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CCCEEEEecC--HHHHHHHH-HHHHHC-CCC-EEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            8999999999  332 3332 222221 222 4456666643 2344788888876 543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.63  E-value=0.043  Score=52.14  Aligned_cols=98  Identities=13%  Similarity=0.239  Sum_probs=55.2

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ...+|||+| +|.||+.+++.|...-.+++.+........ ..+...++.+ .........   ..+ ++.++.+|+|++
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~~~-~~~v~~dl~---~~~-~~~~~~vDvVf~   88 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFPHL-RAQKLPTLV---SVK-DADFSTVDAVFC   88 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCGGG-TTSCCCCCB---CGG-GCCGGGCSEEEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCchh-cCcccccce---ecc-hhHhcCCCEEEE
Confidence            346899999 999999999997533346877765432211 1111111100 000000111   112 455678999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|....      .+.....+.|+.+|+.|-
T Consensus        89 atp~~~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           89 CLPHGTT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             CCCTTTH------HHHHHTSCTTCEEEECSS
T ss_pred             cCCchhH------HHHHHHHhCCCEEEECCc
Confidence            9994332      223333377899999875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.62  E-value=0.014  Score=55.44  Aligned_cols=94  Identities=18%  Similarity=0.276  Sum_probs=62.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC---HHHHhhcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~sDiV  240 (342)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.++++++...  ..+++.       ... . ...+   .+++....|+|
T Consensus       194 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~Vi~~~~~~~~~~~--a~~lGa-------~~v-i-~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKREA--AKALGA-------DEV-V-NSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGHHH--HHHHTC-------SEE-E-ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCC-------cEE-e-ccccHHHHHHhhcCCCEE
Confidence            478999999999999999985 8999999999987654321  112221       000 0 0111   22333568999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      +-++....     .-...++.|+++..++.++..
T Consensus       262 id~~g~~~-----~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          262 LNTVAAPH-----NLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             EECCSSCC-----CHHHHHTTEEEEEEEEECCCC
T ss_pred             EECCCCHH-----HHHHHHHHhccCCEEEEeccC
Confidence            98887432     124567888999999988653

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.59  E-value=0.016  Score=54.05  Aligned_cols=95  Identities=15%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh----cCCE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EADV  239 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~sDi  239 (342)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.++++++..  +...++       ..........++.+.+.    ..|+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~~~~lG-------a~~~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYA-RAMGLRVAAVDIDDAKLN--LARRLG-------AEVAVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHH-HHTTCEEEEEESCHHHHH--HHHHTT-------CSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCCHHHHH--HHHHcC-------CCEEEeCCCcCHHHHHHHhCCCCCE
Confidence            578999999999999999985 899999999998876432  222222       11110111123333332    5788


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+.+....+ +    -...++.++++..++.++-
T Consensus       236 vid~~g~~~-~----~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          236 VLVTAVSPK-A----FSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             EEESSCCHH-H----HHHHHHHEEEEEEEEECSC
T ss_pred             EEEeCCCHH-H----HHHHHHHhccCCEEEEeCC
Confidence            888875322 1    2456677888888888753

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.58  E-value=0.021  Score=53.19  Aligned_cols=67  Identities=18%  Similarity=0.201  Sum_probs=46.5

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---------
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (342)
                      .++||||+ |.||+..++.+ +..+.++. ++|+++...  .+...+           .....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~~~-----------~~~~~~~~~~~ll~~~~~l~~~   69 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVG--IIDSIS-----------PQSEFFTEFEFFLDHASNLKRD   69 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGGTC-----------TTCEEESSHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHhhC-----------CCCcEECCHHHHHHhhhhhhhc
Confidence            58999999 78999999987 46688755 678876431  110000           0123457888887         


Q ss_pred             --hcCCEEEEcCCC
Q 019328          235 --READVISLHPVL  246 (342)
Q Consensus       235 --~~sDiV~l~lpl  246 (342)
                        .+.|+|+++.|.
T Consensus        70 ~~~~vD~V~I~tP~   83 (318)
T 3oa2_A           70 SATALDYVSICSPN   83 (318)
T ss_dssp             TTTSCCEEEECSCG
T ss_pred             cCCCCcEEEECCCc
Confidence              568999999993

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.57  E-value=0.032  Score=52.77  Aligned_cols=95  Identities=15%  Similarity=0.186  Sum_probs=52.9

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|||+| .|.||+.+.+.|...=.+++.+.....+.. ..+...++.+   .+....   ...++++ +..+|+|++|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g-~~~~~~~~~~---~g~~~~---~~~~~~~-~~~vDvV~~a~   76 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG-EPVHFVHPNL---RGRTNL---KFVPPEK-LEPADILVLAL   76 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT-SBGGGTCGGG---TTTCCC---BCBCGGG-CCCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC-chhHHhCchh---cCcccc---cccchhH-hcCCCEEEEcC
Confidence            5899999 899999999997433346777654432211 0010001100   000111   1223444 47899999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |.... +.+. .   ..++.|+.+|+.|-
T Consensus        77 g~~~s-~~~a-~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           77 PHGVF-AREF-D---RYSALAPVLVDLSA  100 (345)
T ss_dssp             CTTHH-HHTH-H---HHHTTCSEEEECSS
T ss_pred             CcHHH-HHHH-H---HHHHCCCEEEEcCc
Confidence            95432 2211 1   22367888998875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.56  E-value=0.043  Score=51.92  Aligned_cols=95  Identities=17%  Similarity=0.110  Sum_probs=62.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccc-cCCHHHHhh-----
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~-----  235 (342)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.++++.+..  +..+++       .... .... ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~--~~~~lG-------a~~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDKFA--KAKEVG-------ATECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--HHHHTT-------CSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--HHHHhC-------CceEecccccchhHHHHHHHHhCC
Confidence            578999999999999999985 89999 8999998765432  112222       1100 0000 123444332     


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCC-cEEEecCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~g-ailIN~sR  273 (342)
                      ..|+|+-++...+ +    -...++.++++ ..++.++-
T Consensus       261 g~D~vid~~g~~~-~----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          261 GVDFSFEVIGRLD-T----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CBSEEEECSCCHH-H----HHHHHHHBCTTTCEEEECSC
T ss_pred             CCcEEEECCCCHH-H----HHHHHHHhhcCCcEEEEecc
Confidence            4799999887322 2    24567888998 88888864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.56  E-value=0.0047  Score=56.67  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=36.0

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ..++.|++|.|||.|.+|...++.| ...|++|.++++...
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~L-l~~Ga~VtViap~~~   47 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEEC
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHH-HhCCCEEEEEcCCCC
Confidence            3579999999999999999999998 689999999998654

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.53  E-value=0.027  Score=53.27  Aligned_cols=68  Identities=15%  Similarity=0.212  Sum_probs=47.4

Q ss_pred             CCEEEEEccChHHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEE
Q 019328          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (342)
Q Consensus       165 gktvGIiG~G~IG~-~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV  240 (342)
                      -.+|||||+|.+|. .++..+ +.-++++. ++|+++... +.+.+.++           ....+.+++++++.  .|+|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~-~~~~~~lvav~d~~~~~a-~~~a~~~~-----------~~~~~~~~~~ll~~~~vD~V   92 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCL-LRAGARLAGFHEKDDALA-AEFSAVYA-----------DARRIATAEEILEDENIGLI   92 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHH-HHTTCEEEEEECSCHHHH-HHHHHHSS-----------SCCEESCHHHHHTCTTCCEE
T ss_pred             CcEEEEECcCHHHHHHHHHHh-hcCCcEEEEEEcCCHHHH-HHHHHHcC-----------CCcccCCHHHHhcCCCCCEE
Confidence            46899999999995 466665 45688855 678887542 23322221           01235799999976  8999


Q ss_pred             EEcCC
Q 019328          241 SLHPV  245 (342)
Q Consensus       241 ~l~lp  245 (342)
                      +++.|
T Consensus        93 ~I~tp   97 (361)
T 3u3x_A           93 VSAAV   97 (361)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            99999

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.53  E-value=0.0095  Score=51.73  Aligned_cols=101  Identities=9%  Similarity=0.189  Sum_probs=61.2

Q ss_pred             CCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChh-hHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEE
Q 019328          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV  240 (342)
                      .|++.|.| .|.||+.+++.|++.-|++|++.+|++. .. +....      ........  ......+++++++.+|+|
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~-~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~v   77 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRI-PPEII------DHERVTVIEGSFQNPGXLEQAVTNAEVV   77 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHS-CHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccc-hhhcc------CCCceEEEECCCCCHHHHHHHHcCCCEE
Confidence            36799999 5999999999984267999999999865 31 11100      00000000  011123567788999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCC-C-cEEEecCCCcc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKK-E-AILVNCSRGPV  276 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~-g-ailIN~sRG~~  276 (342)
                      +.+..... ..   ....+..|+. + ..||++|....
T Consensus        78 v~~ag~~n-~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           78 FVGAMESG-SD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             EESCCCCH-HH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EEcCCCCC-hh---HHHHHHHHHhcCCCeEEEEeecee
Confidence            99987431 11   3445555542 2 36888876543

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.53  E-value=0.052  Score=51.49  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=24.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d  196 (342)
                      .+|||+|+|.||+.+.|.|...-+++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            3899999999999999987433367877665

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.53  E-value=0.028  Score=53.05  Aligned_cols=31  Identities=29%  Similarity=0.527  Sum_probs=24.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d  196 (342)
                      .+|||+|+|+||+.++|.+...-+++|.+..
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            3899999999999999987433367877654

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.51  E-value=0.07  Score=51.74  Aligned_cols=122  Identities=17%  Similarity=0.199  Sum_probs=70.2

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCC----------hhhHHHHHHhhhhh--hhccCCCCCccccc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY----------QATRLEKFVTAYGQ--FLKANGEQPVTWKR  226 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  226 (342)
                      |.++.|+++.|.|+|++|+.+|+.| ..+|++|+ +.|.+          .. ....+.+..+.  ........ . ...
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L-~e~GakVVavsD~~G~i~dp~GlD~~-~l~~~k~~~g~~~v~~y~~~~-~-~~~  280 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVE-LIQKNKGLTGPALVELFTTKD-N-AEF  280 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTH-HHHHTTTSCHHHHHHHHHHTS-C-CCC
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEECCCcEEECCCCCCHH-HHHHHHHhhCCcccccccccc-C-ceE
Confidence            3479999999999999999999997 68999998 44442          11 11111111000  00000000 0 011


Q ss_pred             cCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       227 ~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      ..+.++++ ..||+++-|-     +.+.|+.+....++- .+++--+-+++- .++- +.|.+..+.-
T Consensus       281 ~~~~~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~a-k~V~EgAN~p~t-~~a~-~~l~~~Gi~~  340 (421)
T 1v9l_A          281 VKNPDAIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPTT-PEAE-RILYERGVVV  340 (421)
T ss_dssp             CSSTTGGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCBC-HHHH-HHHHTTTCEE
T ss_pred             eCCchhhhcCCccEEEecC-----cCCccchhhHHHcCc-eEEEecCCCcCC-HHHH-HHHHHCCCEE
Confidence            10234444 4799998885     345577777777753 477777888863 4443 5566655543

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=95.50  E-value=0.21  Score=47.02  Aligned_cols=113  Identities=13%  Similarity=0.176  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.|+||++||= +++.++.+..+ ..||++|....|..-...+.+.+......+..+   .......+++ .++++|+|
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~-av~~aDvv  246 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFL  246 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHC---CEEEEECCGG-GGTTCSEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEECChh-HHcCCCEE
Confidence            588999999996 67888888886 589999999887531111111110000000001   1123356889 99999999


Q ss_pred             EEcC--CCC--ccc----------ccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          241 SLHP--VLD--KTT----------YHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       241 ~l~l--plt--~~t----------~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      ..-+  ...  .+.          .--++.+.++.+||+++|.-+.   ||.=|+.
T Consensus       247 ytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~  302 (339)
T 4a8t_A          247 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTD  302 (339)
T ss_dssp             EECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCH
T ss_pred             EecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCH
Confidence            9743  111  110          1335788888888888888764   5554443

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.50  E-value=0.043  Score=50.98  Aligned_cols=102  Identities=23%  Similarity=0.227  Sum_probs=58.7

Q ss_pred             CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+|||.|.+|..++..++. ...-++..+|...++. +............  ..+.... ..+ .+.++.||+|+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~-~g~a~dl~~~~~~--~~~~~v~-~~~-~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLA-QAHAEDILHATPF--AHPVWVW-AGS-YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH-HHHHHHHHTTGGG--SCCCEEE-ECC-GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHHHHHhHhh--cCCeEEE-ECC-HHHhCCCCEEEECC
Confidence            479999999999999998753 2335899999986432 2211111110000  0111111 123 56789999999997


Q ss_pred             CCCcccccc-------cCH-------hHHccCCCCcEEEecCC
Q 019328          245 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 plt~~t~~l-------i~~-------~~l~~mk~gailIN~sR  273 (342)
                      +... ..++       .|.       +.+....|+++++|++-
T Consensus        76 g~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           76 GVAQ-RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             CCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCC-CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            6432 2221       111       12233378999999844

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.49  E-value=0.014  Score=51.51  Aligned_cols=70  Identities=21%  Similarity=0.285  Sum_probs=46.0

Q ss_pred             CCEEEEEccChHHHHHHHHHH-hcCCcEEE-EEcCChh-hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCE
Q 019328          165 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~-~a~g~~V~-~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDi  239 (342)
                      .++++|+|.|++|+.+++.+. ...|+++. ++|.++. ..        +.    +...+.......++++++++  .|+
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~ki--------G~----~~i~GvpV~~~~dL~~~v~~~~Id~  151 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLV--------GK----TTEDGIPVYGISTINDHLIDSDIET  151 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTT--------TC----BCTTCCBEEEGGGHHHHC-CCSCCE
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhcc--------Cc----eeECCeEEeCHHHHHHHHHHcCCCE
Confidence            357999999999999998621 35688876 5577665 31        10    00112222335678888874  899


Q ss_pred             EEEcCCC
Q 019328          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~lpl  246 (342)
                      +++++|.
T Consensus       152 vIIAvPs  158 (212)
T 3keo_A          152 AILTVPS  158 (212)
T ss_dssp             EEECSCG
T ss_pred             EEEecCc
Confidence            9999994

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.48  E-value=0.038  Score=52.96  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------h
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  235 (342)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.++++.+..  +..+++.       .........++.+.+      .
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~~~~lGa-------~~vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPSEVRRN--LAKELGA-------DHVIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHHH--HHHHHTC-------SEEECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHcCC-------CEEEcCCCCCHHHHHHHHhCCC
Confidence            3588999999999999999985 89999 9999998875432  2222221       100001112333322      1


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ..|+|+-++.....+...+.......++++..++.++-
T Consensus       282 g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            48999999874322222111111233389999998874

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.46  E-value=0.018  Score=54.36  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=29.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEE-EcCChhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT  201 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~-~d~~~~~  201 (342)
                      .+|||.|||+||+.++|++ ..+|++|++ +||..+.
T Consensus         8 ~kvgInGFGRIGrlv~R~~-~~~~veivainDp~~d~   43 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRAC-MEKGVKVVAVNDPFIDP   43 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECTTCCH
T ss_pred             eEEEEECCChHHHHHHHHH-HhCCCEEEEEeCCCCCh
Confidence            4899999999999999985 678899887 6776443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.44  E-value=0.061  Score=50.40  Aligned_cols=96  Identities=16%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc--cCCHHHH---h----
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEV---L----  234 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~el---l----  234 (342)
                      .|++|.|+|.|.+|...++.+ +.+|++|++.+++.++..  +...++.       .......  ....+++   .    
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~~~~lGa-------~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRLE--VAKNCGA-------DVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHH--HHHHTTC-------SEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEcCCHHHHH--HHHHhCC-------CEEEcCcccccHHHHHHHHhcccc
Confidence            478999999999999999985 799999999998765432  1122221       1000000  1112222   2    


Q ss_pred             -hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       235 -~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                       ...|+|+-++.... +    -...++.++++..++.++.+
T Consensus       238 g~g~D~vid~~g~~~-~----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          238 GDLPNVTIDCSGNEK-C----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SSCCSEEEECSCCHH-H----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCCHH-H----HHHHHHHHhcCCEEEEEecC
Confidence             25899999987322 1    24567889999999998753

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.44  E-value=0.29  Score=45.35  Aligned_cols=115  Identities=14%  Similarity=0.135  Sum_probs=72.8

Q ss_pred             ccC-CCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLK-GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~-gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+. |++|++||= +++.++.+..+ ..||++|....|..-...+.+.+......+..   +.......++++.++++|+
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~---g~~~~~~~d~~eav~~aDv  217 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITA-AILGFEISIAMPKNYKISPEIWEFAMKQALIS---GAKISLGYDKFEALKDKDV  217 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHH---TCEEEEESCHHHHHTTCSE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHc---CCeEEEEcCHHHHhcCCCE
Confidence            477 999999996 57888888876 57999999988753111111111000000000   1123345799999999999


Q ss_pred             EEEcCC--CCcc----------cccccCHhHHccCCCCcEEEecC---CCccCCHH
Q 019328          240 ISLHPV--LDKT----------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       240 V~l~lp--lt~~----------t~~li~~~~l~~mk~gailIN~s---RG~~vd~~  280 (342)
                      |..-.-  ...+          ..--++.+.++.+||+++|.-+.   ||.=|+.+
T Consensus       218 vyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          218 VITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             EEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            987651  1111          11336889999999999998875   67666544

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.43  E-value=0.37  Score=45.65  Aligned_cols=108  Identities=12%  Similarity=0.099  Sum_probs=66.5

Q ss_pred             cccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          161 NLLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       161 ~~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      ..+.|++|++||=|  ++.++.+..+ ..||++|....|..-...+.+.+........   .+.......++++.++.+|
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~---~g~~v~~~~d~~eav~~aD  252 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGA-AKMGMDIRLVGPQAYWPDEELVAACQAIAKQ---TGGKITLTENVAEGVQGCD  252 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHH-HHHTCEEEEESCGGGSCCHHHHHHHHHHHHH---HTCEEEEESCHHHHHTTCS
T ss_pred             CCcCceEEEecCCCCcccchHHHHHH-HhcCceEEEeCCcccCCCHHHHHHHHHHHHH---cCCcceeccCHHHHhccCc
Confidence            46889999999954  7999999986 6899999999875311111111110000000   0112334578999999999


Q ss_pred             EEEEcCCCC----ccc---------ccccCHhHHcc-CCCCcEEEecC
Q 019328          239 VISLHPVLD----KTT---------YHLINKERLAT-MKKEAILVNCS  272 (342)
Q Consensus       239 iV~l~lplt----~~t---------~~li~~~~l~~-mk~gailIN~s  272 (342)
                      +|..-.-..    ++.         .--++.+.+++ .||+++|.-+.
T Consensus       253 vvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          253 FLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             EEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            998643211    111         12367788876 47888887653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.43  E-value=0.057  Score=51.10  Aligned_cols=95  Identities=16%  Similarity=0.060  Sum_probs=62.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc--cCCHHHHhh-----
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.++++.+..  +..+++       ........  ..++.+.+.     
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~a~~lG-------a~~vi~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKFP--KAKALG-------ATDCLNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--HHHHTT-------CSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--HHHHhC-------CcEEEccccccchHHHHHHHHhCC
Confidence            578999999999999999985 89999 8999998776432  112222       11000001  023444332     


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCC-cEEEecCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~g-ailIN~sR  273 (342)
                      ..|+|+-++... ++    -...++.++++ ..++.++-
T Consensus       265 g~Dvvid~~G~~-~~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          265 GVDYSLDCAGTA-QT----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CBSEEEESSCCH-HH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CccEEEECCCCH-HH----HHHHHHHhhcCCCEEEEECC
Confidence            479999888632 22    24577888998 88888764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.41  E-value=0.05  Score=51.45  Aligned_cols=95  Identities=15%  Similarity=0.032  Sum_probs=62.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc--cCCHHHHhh-----
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++..+..  +..+++       ........  ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~a~~lG-------a~~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDKFP--KAIELG-------ATECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGHH--HHHHTT-------CSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHHH--HHHHcC-------CcEEEecccccchHHHHHHHHhCC
Confidence            478999999999999999985 78999 8999998765432  112222       11000001  023444332     


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCC-cEEEecCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~g-ailIN~sR  273 (342)
                      ..|+|+-++... ++    -...++.++++ ..++.++-
T Consensus       261 g~Dvvid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          261 GVDYAVECAGRI-ET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CBSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CCCEEEECCCCH-HH----HHHHHHHHhcCCCEEEEEcc
Confidence            479999988632 22    24577889998 88888864

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.41  E-value=0.031  Score=52.47  Aligned_cols=116  Identities=16%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             CEEEEEccChHHHHHHHHHHhc--------CCcEEEE-EcCChhhH----HHHHHh-hhhhhhccCCCCCccccccCCHH
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLIY-YDLYQATR----LEKFVT-AYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a--------~g~~V~~-~d~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      .+|||+|+|.||+.+++.+.+.        .+.+|.+ +|++....    ...+.. .+.     ..    ......+++
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~-----~~----~~~~~~d~~   73 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRE-----TG----MLRDDAKAI   73 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHH-----HS----SCSBCCCHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhcc-----Cc----cccCCCCHH
Confidence            3799999999999999987433        6777664 56653211    000000 000     00    000023899


Q ss_pred             HHhh--cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCc
Q 019328          232 EVLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (342)
Q Consensus       232 ell~--~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i  291 (342)
                      ++++  +.|+|+.|+|....+.. .-+-....++.|.-++...-+.+. +-+.|.++.++...
T Consensus        74 ~ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           74 EVVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             HHHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence            9986  48999999995432211 123346667888888776555543 45677777766554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.39  E-value=0.046  Score=53.19  Aligned_cols=74  Identities=15%  Similarity=0.203  Sum_probs=47.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccC----CHHHHhh--cCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS----SMDEVLR--EAD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~sD  238 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|+++... +.+.+.+.    ..+...  ...+.    +++++++  +.|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~-~~~a~~~~----~~g~~~--~~~~~~~~~~~~~ll~~~~vD   93 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMV-GRAQEILK----KNGKKP--AKVFGNGNDDYKNMLKDKNID   93 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHH-HHHHHHHH----HTTCCC--CEEECSSTTTHHHHTTCTTCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHHH----hcCCCC--CceeccCCCCHHHHhcCCCCC
Confidence            5899999999999999987432377764 778887542 22211110    001000  12244    8999997  589


Q ss_pred             EEEEcCCC
Q 019328          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~lpl  246 (342)
                      +|++++|.
T Consensus        94 ~V~i~tp~  101 (444)
T 2ixa_A           94 AVFVSSPW  101 (444)
T ss_dssp             EEEECCCG
T ss_pred             EEEEcCCc
Confidence            99999993

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.36  E-value=0.015  Score=58.88  Aligned_cols=137  Identities=15%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             ceEEcCCCC-CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc-cccCCCEEEEEccChHHHHHHHHHHhc
Q 019328          110 IAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEG  187 (342)
Q Consensus       110 I~v~n~p~~-~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g-~~l~gktvGIiG~G~IG~~vA~~l~~a  187 (342)
                      -++.+-... .....||.+.-+-|-+.|             |.-|..   .| ..|++++|.|||.|.+|..+|+.|+ .
T Consensus       285 ~~~~~l~~~~dp~~la~~~~~Lnlklm~-------------wRllp~---~g~ekL~~arVLIVGaGGLGs~vA~~La-~  347 (615)
T 4gsl_A          285 PRVVDLSSLLDPLKIADQSVDLNLKLMK-------------WRILPD---LNLDIIKNTKVLLLGAGTLGCYVSRALI-A  347 (615)
T ss_dssp             CEEEECHHHHCHHHHHHHHHHHHHHHHH-------------HHTCTT---CCHHHHHTCEEEEECCSHHHHHHHHHHH-H
T ss_pred             eeEEeccccCCHHHHHhhhhhhhhHHHH-------------Hhhcch---hhHHHHhCCeEEEECCCHHHHHHHHHHH-H
Confidence            344443332 455677777666554442             222321   12 3699999999999999999999985 5


Q ss_pred             CCc-EEEEEcCChh------------------hHHHHHHhhhhhhhccCCCCCcccc---------------------cc
Q 019328          188 FKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQPVTWK---------------------RA  227 (342)
Q Consensus       188 ~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~  227 (342)
                      .|. ++..+|...-                  ...+...+..    +.-. ......                     ..
T Consensus       348 aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L----~~iN-P~V~v~~~~~~Ipm~gh~v~~e~~~~l~~  422 (615)
T 4gsl_A          348 WGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASL----KRIF-PLMDATGVKLSIPMIGHKLVNEEAQHKDF  422 (615)
T ss_dssp             TTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHH----HHHC-TTCEEEEECCCCCCTTCCCSCHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHH----HhhC-CCcEEEEeeccccccCccccchhhhcCCH
Confidence            675 7888887531                  0111111100    0000 000000                     01


Q ss_pred             CCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       228 ~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .+++++++++|+|+.|+- +.+++.+++..-.+.   +..+|+.+
T Consensus       423 ~~l~~ll~~~DlVvd~tD-n~~tR~~ln~~c~~~---~~PlI~aa  463 (615)
T 4gsl_A          423 DRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  463 (615)
T ss_dssp             HHHHHHHHHCSEEEECCS-SGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             HHHHHHhhcCCEEEecCC-CHHHHHHHHHHHHHc---CCeEEEEE
Confidence            235678999999999876 677888888766543   34466654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.34  E-value=0.019  Score=53.78  Aligned_cols=94  Identities=15%  Similarity=0.086  Sum_probs=61.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~s  237 (342)
                      .|.+|.|+|.|.+|..+++.+ +.+|+ +|++.+++.++...         ++.- ..........++.+.+.     ..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~~~---------~~~l-a~~v~~~~~~~~~~~~~~~~~~g~  232 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVV-RASGAGPILVSDPNPYRLAF---------ARPY-ADRLVNPLEEDLLEVVRRVTGSGV  232 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHHGG---------GTTT-CSEEECTTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHHH---------HHHh-HHhccCcCccCHHHHHHHhcCCCC
Confidence            789999999999999999985 89999 99999987654211         1110 00000011124444333     57


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+-++...+ +    -...++.|+++..++.++.
T Consensus       233 D~vid~~g~~~-~----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          233 EVLLEFSGNEA-A----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEEECSCCHH-H----HHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCCHH-H----HHHHHHHHhcCCEEEEEec
Confidence            99998887322 1    2456778888889988864

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.33  E-value=0.033  Score=51.91  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             CEEEEEccChHHHHHHHHHHh-cCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~sD  238 (342)
                      .+|||||+|.||+.+++.+.+ .-++++. ++|+++......+.+.++          .. ....+.+++++     ..|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g----------~~-~~~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMG----------VT-TTYAGVEGLIKLPEFADID   73 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTT----------CC-EESSHHHHHHHSGGGGGEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcC----------CC-cccCCHHHHHhccCCCCCc
Confidence            489999999999999998744 3467654 678775431112211221          00 11246677764     479


Q ss_pred             EEEEcCC
Q 019328          239 VISLHPV  245 (342)
Q Consensus       239 iV~l~lp  245 (342)
                      +|+.++|
T Consensus        74 vV~~atp   80 (312)
T 1nvm_B           74 FVFDATS   80 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999999

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.33  E-value=0.016  Score=55.41  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=47.7

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcC--CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      -.+|||||.| +|+.-++.+ +..  ++++. ++|++... ..++.+.|+            ...+.++++++++.|+++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~-~~~~~~~elvav~~~~~~~-a~~~a~~~g------------v~~~~~~~~l~~~~D~v~   71 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAF-MQPPEGLELVGLLAQGSAR-SRELAHAFG------------IPLYTSPEQITGMPDIAC   71 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTT-SSCCTTEEEEEEECCSSHH-HHHHHHHTT------------CCEESSGGGCCSCCSEEE
T ss_pred             CCEEEEEehH-HHHHHHHHH-HhCCCCeEEEEEECCCHHH-HHHHHHHhC------------CCEECCHHHHhcCCCEEE
Confidence            3589999999 799888875 444  57866 56887653 233333332            223578999999999999


Q ss_pred             EcCCCC
Q 019328          242 LHPVLD  247 (342)
Q Consensus       242 l~lplt  247 (342)
                      +++|..
T Consensus        72 i~~p~~   77 (372)
T 4gmf_A           72 IVVRST   77 (372)
T ss_dssp             ECCC--
T ss_pred             EECCCc
Confidence            999843

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.32  E-value=0.045  Score=51.73  Aligned_cols=95  Identities=18%  Similarity=0.136  Sum_probs=62.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccc-cCCHHHHhh-----
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~-----  235 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.++++++...  ..+++.       ... .... ..++.+.+.     
T Consensus       190 ~g~~VlV~GaG~vG~~avqla-~~~Ga~~Vi~~~~~~~~~~~--~~~lGa-------~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDKFAR--AKEFGA-------TECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGHHH--HHHHTC-------SEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHHH--HHHcCC-------ceEeccccccccHHHHHHHHhCC
Confidence            578999999999999999985 78999 89999987654321  122221       000 0000 023444332     


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCC-cEEEecCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~g-ailIN~sR  273 (342)
                      ..|+|+-++...+ +    -...++.++++ ..++.++-
T Consensus       260 g~D~vid~~g~~~-~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          260 GVDYSFECIGNVK-V----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CBSEEEECSCCHH-H----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCcHH-H----HHHHHHhhccCCcEEEEEec
Confidence            4799999887322 2    24578889998 88888864

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.31  E-value=0.045  Score=51.06  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=67.8

Q ss_pred             CCEEEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCEEEE
Q 019328          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL  242 (342)
Q Consensus       165 gktvGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDiV~l  242 (342)
                      .|+|.|||+|.+|.+ +|+.| +..|++|.++|....+...+.       ++..+.   ....-.+.+++. ..+|+|+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L-~~~G~~V~~~D~~~~~~~~~~-------L~~~gi---~v~~g~~~~~l~~~~~d~vV~   72 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIA-KEAGFEVSGCDAKMYPPMSTQ-------LEALGI---DVYEGFDAAQLDEFKADVYVI   72 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHH-HHTTCEEEEEESSCCTTHHHH-------HHHTTC---EEEESCCGGGGGSCCCSEEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHH-HhCCCEEEEEcCCCCcHHHHH-------HHhCCC---EEECCCCHHHcCCCCCCEEEE
Confidence            478999999999996 88887 689999999998753211111       111111   111112344555 57999998


Q ss_pred             c--CCC-Ccccc-------cccCH-hHHcc-C-CCC-cEEEecCCCccCCHHHHHHHHHcCC
Q 019328          243 H--PVL-DKTTY-------HLINK-ERLAT-M-KKE-AILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       243 ~--lpl-t~~t~-------~li~~-~~l~~-m-k~g-ailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      .  +|. +|+..       .++++ +.|.. + +.. .+-|-=+.|..--..-+...|+...
T Consensus        73 Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           73 GNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             CTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             CCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            6  432 22211       23433 33443 3 332 3445446788777777777887643

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=95.30  E-value=0.018  Score=46.26  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=65.0

Q ss_pred             CEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++++|||.    |..|..+.+.| +..|.+|+..+|....-                   .+...+.+++++-. -|+++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~dlp~-vDlav   63 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERL-KSHGHEFIPVGRKKGEV-------------------LGKTIINERPVIEG-VDTVT   63 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHH-HHHTCCEEEESSSCSEE-------------------TTEECBCSCCCCTT-CCEEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHH-HHCCCeEEEECCCCCcC-------------------CCeeccCChHHCCC-CCEEE
Confidence            67999998    67999999998 57788999999864321                   11223567777777 89999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++|- +.+..++.+ .. .+...+++++.+-    .++++.+..++..+.
T Consensus        64 i~~p~-~~v~~~v~e-~~-~~g~k~v~~~~G~----~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           64 LYINP-QNQLSEYNY-IL-SLKPKRVIFNPGT----ENEELEEILSENGIE  107 (122)
T ss_dssp             ECSCH-HHHGGGHHH-HH-HHCCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred             EEeCH-HHHHHHHHH-HH-hcCCCEEEECCCC----ChHHHHHHHHHcCCe
Confidence            99992 334444432 22 2344467665432    345666666665554

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.29  E-value=0.0099  Score=56.41  Aligned_cols=102  Identities=14%  Similarity=0.183  Sum_probs=51.8

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhcc---CCCCCccccccCCHHHHhh-cCCEE
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA---NGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ell~-~sDiV  240 (342)
                      .+|||+| +|.||+.+++.|...-+++|.+..++.......+.+.++.....   .+...... ...+++++++ .+|+|
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~DvV   87 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVV-IPTDPKHEEFEDVDIV   87 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBC-EESCTTSGGGTTCCEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEE-EeCCHHHHhcCCCCEE
Confidence            5899999 99999999999743334687766322111000010001100000   00000111 1124555556 89999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ++|+|... ++.. -...   ++.|..+|+.+-
T Consensus        88 ~~atp~~~-~~~~-a~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           88 FSALPSDL-AKKF-EPEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             EECCCHHH-HHHH-HHHH---HHTTCEEEECCS
T ss_pred             EECCCchH-HHHH-HHHH---HHCCCEEEECCc
Confidence            99999332 1111 1122   356788888764

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.29  E-value=0.035  Score=52.21  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      .+|||+|+|.||+.+.|.+...-.++|.+.+-.
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            379999999999999998754456888766543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.26  E-value=0.067  Score=45.79  Aligned_cols=97  Identities=10%  Similarity=0.063  Sum_probs=58.0

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc-ccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDiV~l~  243 (342)
                      ++|.|.| .|.||+.+++.| ..-|.+|++.+|++..... .        . .+....... ...+. +.+..+|+|+.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~-~--------~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~   68 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEA-KNRGHEVTAIVRNAGKITQ-T--------H-KDINILQKDIFDLTL-SDLSDQNVVVDA   68 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCSHHHHH-H--------C-SSSEEEECCGGGCCH-HHHTTCSEEEEC
T ss_pred             CeEEEEcCCchhHHHHHHHH-HhCCCEEEEEEcCchhhhh-c--------c-CCCeEEeccccChhh-hhhcCCCEEEEC
Confidence            3789999 599999999998 4779999999998754211 0        0 010000000 01112 678899999999


Q ss_pred             CCCCcccccc---cCHhHHccCCC--CcEEEecCCC
Q 019328          244 PVLDKTTYHL---INKERLATMKK--EAILVNCSRG  274 (342)
Q Consensus       244 lplt~~t~~l---i~~~~l~~mk~--gailIN~sRG  274 (342)
                      ...+......   .....++.|+.  ...+|++|..
T Consensus        69 ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           69 YGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            8754432211   11345555543  3567777654

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.26  E-value=0.083  Score=50.04  Aligned_cols=105  Identities=16%  Similarity=0.230  Sum_probs=59.1

Q ss_pred             CCEEEEEc-cChHHHHHHHHHHhcCC------cEEEEEc-CC-hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh
Q 019328          165 GQTVGVIG-AGRIGSAYARMMVEGFK------MNLIYYD-LY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       165 gktvGIiG-~G~IG~~vA~~l~~a~g------~~V~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (342)
                      ..+|+|+| .|.+|+.+.++|. ..+      .++..+. ++ ..+....   .+.. +.  +........ .+.+ .++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~-~~~~~~~~~~ei~~l~s~~~agk~~~~---~~~~-l~--~~~~~~~~~-~~~~-~~~   79 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLL-GHPAYADGRLRIGALTAATSAGSTLGE---HHPH-LT--PLAHRVVEP-TEAA-VLG   79 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHH-TCHHHHTTSEEEEEEEESSCTTSBGGG---TCTT-CG--GGTTCBCEE-CCHH-HHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-cCCCCCCccEEEEEEECCCcCCCchhh---hccc-cc--ccceeeecc-CCHH-Hhc
Confidence            36899999 9999999999974 444      5666654 22 1111100   0000 00  000111111 2333 356


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHH
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~  284 (342)
                      .+|+|++|+|...      ..+....++.|+.+|+.|.---.+..+.++
T Consensus        80 ~~DvVf~alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~~  122 (352)
T 2nqt_A           80 GHDAVFLALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVWE  122 (352)
T ss_dssp             TCSEEEECCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHHH
T ss_pred             CCCEEEECCCCcc------hHHHHHHHhCCCEEEEECCCccCCcchhhh
Confidence            8999999999553      344444446789999987655444444443

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.25  E-value=0.087  Score=44.44  Aligned_cols=73  Identities=11%  Similarity=0.052  Sum_probs=48.1

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV~  241 (342)
                      ++++.|.|. |.||+.+++.| ..-|.+|++.+|++.....         ....+....  ......++.++++.+|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l-~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HHCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            479999998 99999999998 4678999999998653110         000000000  0011235667888999999


Q ss_pred             EcCCCC
Q 019328          242 LHPVLD  247 (342)
Q Consensus       242 l~lplt  247 (342)
                      .+....
T Consensus        73 ~~a~~~   78 (206)
T 1hdo_A           73 VLLGTR   78 (206)
T ss_dssp             ECCCCT
T ss_pred             ECccCC
Confidence            887644

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.25  E-value=0.074  Score=49.97  Aligned_cols=107  Identities=11%  Similarity=0.109  Sum_probs=61.7

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ....++|+|||.|.||..+|..++ ..|.  ++..+|...... +...........-..  ........+.+ .++.||+
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~L~Di~~~~~-~g~a~DL~~~~~~~~--~~~i~~~~d~~-~~~~aDi   90 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISIL-MKDLADELALVDVIEDKL-KGEMMDLQHGSLFLK--TPKIVSSKDYS-VTANSKL   90 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSCHHHH-HHHHHHHHHTGGGCS--CCEEEECSSGG-GGTTEEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEeCChHHH-HHHHHhhhhhhhccC--CCeEEEcCCHH-HhCCCCE
Confidence            456789999999999999998865 3354  899999976432 111111110000000  01111223555 4899999


Q ss_pred             EEEcCCC--Cc-cccc-ccC--H-------hHHccCCCCcEEEecCC
Q 019328          240 ISLHPVL--DK-TTYH-LIN--K-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       240 V~l~lpl--t~-~t~~-li~--~-------~~l~~mk~gailIN~sR  273 (342)
                      |+++.-.  .| .||. ++.  .       +.+....|++++++++-
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9998532  22 2332 221  1       23344578999999984

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.25  E-value=0.019  Score=52.70  Aligned_cols=93  Identities=16%  Similarity=0.111  Sum_probs=60.4

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc-CCHHHHhhcCCEEE
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~sDiV~  241 (342)
                      .|++|.|+|. |.||..+++.+ +.+|++|++.+++..+...  ...++       ......... .++.+.+...|+|+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~~~~g-------a~~~~~~~~~~~~~~~~~~~d~vi  194 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLAL--PLALG-------AEEAATYAEVPERAKAWGGLDLVL  194 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSHH--HHHTT-------CSEEEEGGGHHHHHHHTTSEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHhcC-------CCEEEECCcchhHHHHhcCceEEE
Confidence            4789999998 99999999985 7899999999987654221  11111       110000011 12333346789999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      . +.. +     .-...++.|+++..++.++-
T Consensus       195 d-~g~-~-----~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          195 E-VRG-K-----EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             E-CSC-T-----THHHHHTTEEEEEEEEEC--
T ss_pred             E-CCH-H-----HHHHHHHhhccCCEEEEEeC
Confidence            8 763 2     23567888999999998864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.029  Score=52.49  Aligned_cols=96  Identities=13%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccccCCHHHHhh-----c
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~-----~  236 (342)
                      .|++|.|+|. |.||+.+++.+ +..|++|++.+++.....  ....++       .... ......++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~~~--~~~~~g-------~~~~~d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGKEE--LFRSIG-------GEVFIDFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTHHH--HHHHTT-------CCEEEETTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHHHH--HHHHcC-------CceEEecCccHhHHHHHHHHhCCC
Confidence            4789999999 89999999986 789999999998765431  111111       1000 0011234544443     4


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .|+|+.+....+     .-...++.|+++..+|+++..
T Consensus       239 ~D~vi~~~g~~~-----~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          239 AHGVINVSVSEA-----AIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             EEEEEECSSCHH-----HHHHHTTSEEEEEEEEECCCC
T ss_pred             CCEEEECCCcHH-----HHHHHHHHHhcCCEEEEEeCC
Confidence            799998876322     124567888999999998753

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.23  E-value=0.026  Score=53.59  Aligned_cols=95  Identities=19%  Similarity=0.176  Sum_probs=61.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-------
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-------  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-------  235 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.++++++..  +...++.       .........++.+.+.       
T Consensus       182 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~a~~lGa-------~~vi~~~~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLA-RLAGATTVILSTRQATKRR--LAEEVGA-------TATVDPSAGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHHH--HHHHHTC-------SEEECTTSSCHHHHHHSTTSSST
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHcCC-------CEEECCCCcCHHHHHHhhhhccC
Confidence            478999999999999999985 89999 8999998875432  2222221       1111111234444443       


Q ss_pred             -cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          236 -EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 -~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                       ..|+|+-++... ++    -...++.++++..++.++-
T Consensus       252 gg~Dvvid~~G~~-~~----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          252 GGVDVVIECAGVA-ET----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TCEEEEEECSCCH-HH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEECCCCH-HH----HHHHHHHhccCCEEEEEec
Confidence             379999887632 21    2456777888888888764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.23  E-value=0.038  Score=52.00  Aligned_cols=95  Identities=17%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc----CCH-HHHh---
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA----SSM-DEVL---  234 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l-~ell---  234 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++..+..  +..+++       ... .....    .++ +++.   
T Consensus       171 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~a~~lG-------a~~-vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLS--KAKEIG-------ADL-VLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHH--HHHHTT-------CSE-EEECSSCCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHhC-------CCE-EEcCcccccchHHHHHHHHh
Confidence            478999999999999999985 89999 9999998765421  112222       110 00000    111 1222   


Q ss_pred             -hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       235 -~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                       ...|+|+-++.... +    -...++.++++..++.++-+
T Consensus       240 ~~g~D~vid~~g~~~-~----~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          240 GCKPEVTIECTGAEA-S----IQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             TSCCSEEEECSCCHH-H----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCChH-H----HHHHHHHhcCCCEEEEEecC
Confidence             25899999987322 1    24567889999999998753

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.22  E-value=0.041  Score=50.67  Aligned_cols=98  Identities=11%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|+| +|+||+.+++.+...-++++. ++|+.......   ...++   -.+....+.....++++++..+|+|+-+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G---~d~ge---l~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVD---KDASI---LIGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTT---SBGGG---GTTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc---cchHH---hhccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            5899999 999999999987555688866 55776422100   00000   0111123334457999999999999977


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .+  |+..   .+.....++.|.-+|-...|
T Consensus        96 T~--p~a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A           96 SQ--PQAS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             SC--HHHH---HHHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHH---HHHHHHHHHcCCCEEEECCC
Confidence            65  3321   11122234556666655566

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=95.21  E-value=0.023  Score=52.30  Aligned_cols=101  Identities=22%  Similarity=0.206  Sum_probs=57.9

Q ss_pred             CEEEEEccChHHHHHHHHHHh---cCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCE
Q 019328          166 QTVGVIGAGRIGSAYARMMVE---GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~---a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDi  239 (342)
                      .+|||||+|.||+..++.+.+   .-++++. ++|++...      +.            .+.. +.+++++++  +.|+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a------~~------------~g~~-~~~~~ell~~~~vD~   68 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG------SL------------DEVR-QISLEDALRSQEIDV   68 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC------EE------------TTEE-BCCHHHHHHCSSEEE
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH------HH------------cCCC-CCCHHHHhcCCCCCE
Confidence            489999999999999988632   2367766 56664211      00            0111 368999997  6799


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCc-EEEecC-CCccCCHHHHHHHHHcCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEA-ILVNCS-RGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~ga-ilIN~s-RG~~vd~~aL~~aL~~g~  290 (342)
                      |++++|.  .++.-+   ..+.++.|. +++.-- --.+-+.+.|.++.++..
T Consensus        69 V~i~tp~--~~H~~~---~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g  116 (294)
T 1lc0_A           69 AYICSES--SSHEDY---IRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKG  116 (294)
T ss_dssp             EEECSCG--GGHHHH---HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTT
T ss_pred             EEEeCCc--HhHHHH---HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            9999993  333212   223333443 455421 112223355666555443

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.20  E-value=0.026  Score=53.21  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=61.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC---HHHHhhcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~sDiV  240 (342)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++..+.... ...++       ....  ....+   +.++....|+|
T Consensus       180 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~~~~~~~~~~-~~~lG-------a~~v--i~~~~~~~~~~~~~g~D~v  248 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSNKKREEA-LQDLG-------ADDY--VIGSDQAKMSELADSLDYV  248 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSTTHHHHH-HTTSC-------CSCE--EETTCHHHHHHSTTTEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCChHHHHHH-HHHcC-------Ccee--eccccHHHHHHhcCCCCEE
Confidence            588999999999999999985 78999999999886543211 10111       1110  01112   22333457999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +-++....     .-...++.++++..++.++-
T Consensus       249 id~~g~~~-----~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          249 IDTVPVHH-----ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EECCCSCC-----CSHHHHTTEEEEEEEEECSC
T ss_pred             EECCCChH-----HHHHHHHHhccCCEEEEeCC
Confidence            99887432     12456788899999988864

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.19  E-value=0.018  Score=53.52  Aligned_cols=102  Identities=19%  Similarity=0.295  Sum_probs=57.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      +|+|||.|.+|..+|..++. .|. +|..+|...+.. +.............. .........+. +.++.||+|+++.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~-~~l~el~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM-RGYDDLLLIARTPGKP-QGEALDLAHAAAELG-VDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HTCSCEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHh-CCCCEEEEEcCChhhH-HHHHHHHHHhhhhcC-CCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            58999999999999988753 244 699999986432 221111111000000 01111122455 57899999999966


Q ss_pred             CCcccccc-----c--C----H---hHHccCCCCcEEEecCC
Q 019328          246 LDKTTYHL-----I--N----K---ERLATMKKEAILVNCSR  273 (342)
Q Consensus       246 lt~~t~~l-----i--~----~---~~l~~mk~gailIN~sR  273 (342)
                      ... ..++     +  |    .   +.+....|++++|+++-
T Consensus        77 ~~~-k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           77 IGR-KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CCC-CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            432 2222     0  1    1   12333358999999855

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.19  E-value=0.15  Score=47.69  Aligned_cols=117  Identities=16%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             cccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhh--HHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328          161 NLLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       161 ~~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      ..+.|++|++||=|  ++.++.+..+ ..||++|.+..|..-.  ..+...+......+..+ .+.......++++.+++
T Consensus       157 ~~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~-~g~~v~~~~d~~eav~~  234 (328)
T 3grf_A          157 NGFKGIKFAYCGDSMNNVTYDLMRGC-ALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHG-TGGSIKIFHDCKKGCEG  234 (328)
T ss_dssp             TTGGGCCEEEESCCSSHHHHHHHHHH-HHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHT-CCCEEEEESSHHHHHTT
T ss_pred             cccCCcEEEEeCCCCcchHHHHHHHH-HHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhcc-CCCeEEEEcCHHHHhcC
Confidence            36899999999986  8888888886 5899999998875321  11111111000000000 01123345799999999


Q ss_pred             CCEEEEcC----CCCcc---------cccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          237 ADVISLHP----VLDKT---------TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       237 sDiV~l~l----plt~~---------t~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      +|+|..-+    -..++         ..--++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       235 aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~  293 (328)
T 3grf_A          235 VDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTA  293 (328)
T ss_dssp             CSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCH
T ss_pred             CCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCH
Confidence            99998642    21111         11336889999999999998774   5654443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.17  E-value=0.082  Score=48.26  Aligned_cols=38  Identities=24%  Similarity=0.127  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      ..+.||++-|.|- |.||+.+|+.|+ ..|++|+..+++.
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~   83 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYA-REGADVAINYLPA   83 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECCGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCc
Confidence            4689999999997 899999999984 7899999998874

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.16  E-value=0.13  Score=50.77  Aligned_cols=109  Identities=13%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             ccccCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh---hccCCCCCccccc
Q 019328          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQPVTWKR  226 (342)
Q Consensus       160 g~~l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  226 (342)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||........   .|+..   +.... .  ....
T Consensus       323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~-~--~~~~  395 (478)
T 2y0c_A          323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAEL-LSRGARIAAYDPVAQEEARR---VIALDLADHPSWL-E--RLSF  395 (478)
T ss_dssp             CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECTTTHHHHHH---HHHHHTTTCHHHH-T--TEEE
T ss_pred             cccCCCCEEEEEecccCCCCCccccChHHHHHHHH-HHCCCEEEEECCCccHHHHH---hhccccccccccc-c--ceee
Confidence            346899999999984          2457888987 68999999999986432111   11100   00000 0  0122


Q ss_pred             cCCHHHHhhcCCEEEEcCCCCcccccccCHhHH-ccCCCCcEEEecCCCccCCHH
Q 019328          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       227 ~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l-~~mk~gailIN~sRG~~vd~~  280 (342)
                      ..++++.++.||.|+++..- ++-+. ++-+.+ +.|+ +.+++++ |+ +.|.+
T Consensus       396 ~~~~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          396 VDDEAQAARDADALVIVTEW-KIFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             CSSHHHHTTTCSEEEECSCC-GGGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             cCCHHHHHhCCCEEEEecCC-hHhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            45788999999999999884 33333 344444 4566 4788887 44 34554

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.14  E-value=0.23  Score=46.04  Aligned_cols=75  Identities=16%  Similarity=0.326  Sum_probs=50.7

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|+||++||=   |++.++.+..+ ..| |++|.+..|..-...+...+.    .+..   +.......++++.++++
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~~G~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~eav~~a  219 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYAL-SLFENVEMYFVSPKELRLPKDIIED----LKAK---NIKFYEKESLDDLDDDI  219 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHHH----HHHT---TCCEEEESCGGGCCTTC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHH-HhcCCCEEEEECCcccccCHHHHHH----HHHc---CCEEEEEcCHHHHhcCC
Confidence            478999999997   58999999987 689 999999887532111111111    1111   11223357899999999


Q ss_pred             CEEEEcC
Q 019328          238 DVISLHP  244 (342)
Q Consensus       238 DiV~l~l  244 (342)
                      |+|..-.
T Consensus       220 Dvvy~~~  226 (306)
T 4ekn_B          220 DVLYVTR  226 (306)
T ss_dssp             SEEEECC
T ss_pred             CEEEeCC
Confidence            9998753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.12  E-value=0.11  Score=50.86  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=66.6

Q ss_pred             ccCCCEEEEEccCh----------HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCC-CC----ccccc
Q 019328          162 LLKGQTVGVIGAGR----------IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QP----VTWKR  226 (342)
Q Consensus       162 ~l~gktvGIiG~G~----------IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~  226 (342)
                      .+.|++|+|+|+--          -...+++.| ...|++|.+|||.......  ...+.    .... .+    .....
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~  398 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYL-MDEGAHLHIYDPKVPREQI--VVDLS----HPGVSEDDQVSRLVTI  398 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHH--HHHHC----C------CHHHHHEEE
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHH-HHCCCEEEEEcCccCHHHH--hhhhc----cccccccccccCceee
Confidence            48899999999974          678899997 6899999999998543210  00010    0000 00    01122


Q ss_pred             cCCHHHHhhcCCEEEEcCCCCcccccccCHhH-HccCCCCcEEEecCCCc
Q 019328          227 ASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGP  275 (342)
Q Consensus       227 ~~~l~ell~~sDiV~l~lplt~~t~~li~~~~-l~~mk~gailIN~sRG~  275 (342)
                      ..++.+.++.+|.|++++.- ++-+. ++.+. .+.|+...+++++ |+-
T Consensus       399 ~~~~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          399 SKDPYEACDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             CSSHHHHHTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             cCCHHHHHhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            35788899999999999884 34443 35444 4567776668876 553

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.11  E-value=0.088  Score=45.27  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccc-cccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|.|.|. |.||+.+++.| ..-|.+|++.+|+.......         ...+...... ....+. +.+..+|+|+.+
T Consensus         1 MkilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~   69 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEA-RRRGHEVLAVVRDPQKAADR---------LGATVATLVKEPLVLTE-ADLDSVDAVVDA   69 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHH---------TCTTSEEEECCGGGCCH-HHHTTCSEEEEC
T ss_pred             CEEEEEcCCCHHHHHHHHHH-HHCCCEEEEEEecccccccc---------cCCCceEEecccccccH-hhcccCCEEEEC
Confidence            36899997 99999999998 46799999999987542210         0001000000 001112 678899999988


Q ss_pred             CCCC--cccc--cc-cCHhHHccCC-CCcEEEecCCC
Q 019328          244 PVLD--KTTY--HL-INKERLATMK-KEAILVNCSRG  274 (342)
Q Consensus       244 lplt--~~t~--~l-i~~~~l~~mk-~gailIN~sRG  274 (342)
                      ....  +...  ++ .....++.|+ .|..+|++|..
T Consensus        70 ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           70 LSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             CCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             CccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            7653  1110  11 1234566664 34678888653

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.10  E-value=0.033  Score=52.46  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=44.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhh-hhhhhccCCCC-C---ccccccCCHHHHhhcCCE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTA-YGQFLKANGEQ-P---VTWKRASSMDEVLREADV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~l~ell~~sDi  239 (342)
                      .+|||+|+|.||+.+++.|...-++++.+. |+.+.......... +..+..-.+.. .   .......+.++++..+|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999998754357887654 55432111000000 00000000000 0   000001257788889999


Q ss_pred             EEEcCCCC
Q 019328          240 ISLHPVLD  247 (342)
Q Consensus       240 V~l~lplt  247 (342)
                      |+.|+|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999944

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.09  E-value=0.019  Score=53.66  Aligned_cols=71  Identities=15%  Similarity=0.113  Sum_probs=45.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc--CCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sDiV~l  242 (342)
                      .++||||+|.+|+..++.+  .-++++. ++|+++....+.+.+.+    +.   .+.....+.+++++++.  .|+|++
T Consensus         3 ~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~ll~~~~vD~V~I   73 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAI----SE---MNIKPKKYNNWWEMLEKEKPDILVI   73 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHH----HT---TTCCCEECSSHHHHHHHHCCSEEEE
T ss_pred             eEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHH----HH---cCCCCcccCCHHHHhcCCCCCEEEE
Confidence            4899999999999776654  4577876 57877531111111100    00   01112346799999975  899999


Q ss_pred             cCC
Q 019328          243 HPV  245 (342)
Q Consensus       243 ~lp  245 (342)
                      +.|
T Consensus        74 ~tp   76 (337)
T 3ip3_A           74 NTV   76 (337)
T ss_dssp             CSS
T ss_pred             eCC
Confidence            998

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.07  E-value=0.059  Score=48.66  Aligned_cols=40  Identities=25%  Similarity=0.170  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ..+.||++-|.|- |.||+.+|+.|+ .-|++|+..+++...
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~   67 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVNAAE   67 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHH
Confidence            3689999999997 789999999985 789999988665433

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.06  E-value=0.056  Score=53.32  Aligned_cols=70  Identities=10%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             CCEEEEEcc----ChHHHHHHHHHHhcC--CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--
Q 019328          165 GQTVGVIGA----GRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (342)
Q Consensus       165 gktvGIiG~----G~IG~~vA~~l~~a~--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (342)
                      -.+|||||+    |.||+..++.+. ..  ++++. ++|+++... +.+.+.++       ..  ....+.+++++++  
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~-~~~~~~~lvav~d~~~~~a-~~~a~~~g-------~~--~~~~~~d~~ell~~~  107 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQ-QLSSQFQIVALYNPTLKSS-LQTIEQLQ-------LK--HATGFDSLESFAQYK  107 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHH-HTTTTEEEEEEECSCHHHH-HHHHHHTT-------CT--TCEEESCHHHHHHCT
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHH-hcCCCeEEEEEEeCCHHHH-HHHHHHcC-------CC--cceeeCCHHHHhcCC
Confidence            358999999    999999999874 54  78865 788886532 22222221       11  0123578999996  


Q ss_pred             cCCEEEEcCC
Q 019328          236 EADVISLHPV  245 (342)
Q Consensus       236 ~sDiV~l~lp  245 (342)
                      +.|+|++++|
T Consensus       108 ~vD~V~I~tp  117 (479)
T 2nvw_A          108 DIDMIVVSVK  117 (479)
T ss_dssp             TCSEEEECSC
T ss_pred             CCCEEEEcCC
Confidence            6899999999

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.05  E-value=0.041  Score=51.82  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=23.4

Q ss_pred             EEEEEccChHHHHHHHHHHhc--CCcEEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a--~g~~V~~~d  196 (342)
                      +|||+|+|.||+.+.|.|...  -.++|.+.+
T Consensus         3 kVgInG~G~IGr~llR~l~~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            799999999999999987432  246776544

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.00  E-value=0.063  Score=52.47  Aligned_cols=121  Identities=16%  Similarity=0.124  Sum_probs=64.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhh-hh-h-hccC-CC--C-----CccccccCCHHHH
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAY-GQ-F-LKAN-GE--Q-----PVTWKRASSMDEV  233 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~-~~-~-~~~~-~~--~-----~~~~~~~~~l~el  233 (342)
                      .+|||||+|.||+.+++.+.+.-++++. ++|+++.... .....+ +. + .... ..  .     .-....+.+++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~-~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL  102 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTF-KAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI  102 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHH-HHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHH-HHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence            4799999999999999887444477755 5688765432 221111 20 0 0000 00  0     0011235799999


Q ss_pred             hh--cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc-cCCHHHHHHHHHcCCc
Q 019328          234 LR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPM  291 (342)
Q Consensus       234 l~--~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~-~vd~~aL~~aL~~g~i  291 (342)
                      ++  ..|+|+.++|.. +...   +-.++.|+.|.-++...-+- ..+-+.|.++-++..+
T Consensus       103 L~d~dIDaVviaTp~p-~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gv  159 (446)
T 3upl_A          103 LSNPLIDVIIDATGIP-EVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGV  159 (446)
T ss_dssp             HTCTTCCEEEECSCCH-HHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hcCCCCCEEEEcCCCh-HHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCC
Confidence            97  489999999843 2111   22344455555555321111 1123466666555443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.99  E-value=0.054  Score=51.35  Aligned_cols=95  Identities=17%  Similarity=0.124  Sum_probs=61.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc--cCCHHHHhh-----
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.++++.+..  +..+++       ........  ..++.+.+.     
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a-~~~Ga~~Vi~~~~~~~~~~--~a~~lG-------a~~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGA-KTAGASRIIGIDIDSKKYE--TAKKFG-------VNEFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHHTCSCEEEECSCTTHHH--HHHTTT-------CCEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--HHHHcC-------CcEEEccccCchhHHHHHHHhcCC
Confidence            588999999999999999985 89999 8999998876532  222222       11100011  134444332     


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCC-cEEEecCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~g-ailIN~sR  273 (342)
                      ..|+|+-++...+ +    -...++.+++| ..++.++-
T Consensus       263 g~D~vid~~g~~~-~----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          263 GVDYSFECIGNVS-V----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CBSEEEECSCCHH-H----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCCHH-H----HHHHHHHhhccCCEEEEEcc
Confidence            4799998887322 1    24567888886 88887763

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.97  E-value=0.026  Score=53.42  Aligned_cols=95  Identities=9%  Similarity=0.044  Sum_probs=61.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~s  237 (342)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++.++..  +...++.       .........++.+.+.     ..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~~Vi~~~~~~~~~~--~a~~lGa-------~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRLE--LAKQLGA-------THVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHHH--HHHHHTC-------SEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHHH--HHHHcCC-------CEEecCCccCHHHHHHHhcCCCC
Confidence            478999999999999999985 78999 7999998765432  1122221       1000011123333222     47


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+-++... ++    -...++.++++..++.++-
T Consensus       260 D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          260 NFALESTGSP-EI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEECSCCH-HH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEECCCCH-HH----HHHHHHHHhcCCEEEEeCC
Confidence            9999887632 21    2457788899999998874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.95  E-value=0.027  Score=52.43  Aligned_cols=97  Identities=19%  Similarity=0.108  Sum_probs=62.9

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cC
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~s  237 (342)
                      .|++|.|.|. |.||..+++.+ +..|++|++.+++..+... ....++       ..........++.+.+.     ..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~-~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEKCRF-LVEELG-------FDGAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH-HHHTTC-------CSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-HHHHcC-------CCEEEECCCHHHHHHHHHhcCCCc
Confidence            5889999999 99999999985 7999999999988654221 101111       11000011123333332     47


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |+|+.+...  +    .-...++.++++..++.++...
T Consensus       220 d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          220 DVFFDNVGG--E----ILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             EEEEESSCH--H----HHHHHHTTEEEEEEEEECCCGG
T ss_pred             eEEEECCCc--c----hHHHHHHHHhhCCEEEEEeecc
Confidence            888888762  1    2356778899999999887543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=94.94  E-value=0.04  Score=53.61  Aligned_cols=70  Identities=11%  Similarity=0.115  Sum_probs=49.0

Q ss_pred             CEEEEEcc----ChHHHHHHHHHHhcC--CcEE-EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--c
Q 019328          166 QTVGVIGA----GRIGSAYARMMVEGF--KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (342)
Q Consensus       166 ktvGIiG~----G~IG~~vA~~l~~a~--g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~  236 (342)
                      .+|||||+    |.||+..++.+ +..  ++++ .++|+++... +.+.+.++       ..  ....+.+++++++  +
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l-~~~~~~~~lvav~d~~~~~~-~~~a~~~g-------~~--~~~~~~~~~~ll~~~~   89 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAI-LQLSSQFQITALYSPKIETS-IATIQRLK-------LS--NATAFPTLESFASSST   89 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHH-HHTTTTEEEEEEECSSHHHH-HHHHHHTT-------CT--TCEEESSHHHHHHCSS
T ss_pred             CEEEEEcccCCCChHHHHHHHHH-HhcCCCeEEEEEEeCCHHHH-HHHHHHcC-------CC--cceeeCCHHHHhcCCC
Confidence            58999999    99999999987 455  7886 4788886542 22222221       11  0123578999997  6


Q ss_pred             CCEEEEcCCC
Q 019328          237 ADVISLHPVL  246 (342)
Q Consensus       237 sDiV~l~lpl  246 (342)
                      .|+|++++|.
T Consensus        90 vD~V~i~tp~   99 (438)
T 3btv_A           90 IDMIVIAIQV   99 (438)
T ss_dssp             CSEEEECSCH
T ss_pred             CCEEEEeCCc
Confidence            8999999993

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.94  E-value=0.046  Score=50.70  Aligned_cols=94  Identities=18%  Similarity=0.097  Sum_probs=62.3

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc-CCHHHHhh-----c
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~-----~  236 (342)
                      .|+++.|.|. |.||+.+++.+ +..|++|++.+++.......  ..++       ......... .++.+.+.     .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~~~~--~~~g-------~~~~~d~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKIAYL--KQIG-------FDAAFNYKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHH-HHTTCEEEEEESSHHHHHHH--HHTT-------CSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HhcC-------CcEEEecCCHHHHHHHHHHHhCCC
Confidence            5889999998 99999999986 78999999999876542211  2221       100000011 34444332     4


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+++.+...  .+    -...++.++++..++.++-
T Consensus       215 ~d~vi~~~g~--~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG--EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh--HH----HHHHHHHHhcCCEEEEEec
Confidence            7999888762  21    3567788999999998874

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.94  E-value=0.27  Score=47.60  Aligned_cols=114  Identities=22%  Similarity=0.186  Sum_probs=72.0

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcC----------ChhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDL----------YQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      .++.|+||.|.|+|++|+.+|+.| ...|++|+ +.|.          +.. ...+..+..+      .....   . .+
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L-~~~GakVVavsD~~G~i~dp~Gld~~-~l~~~~~~~g------~v~~~---~-~~  281 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHA-ERLGMRVVAVATSMGGMYAPEGLDVA-EVLSAYEATG------SLPRL---D-LA  281 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHH-HHHHHHHHHS------SCSCC---C-BC
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEcCCCeEECCCCCCHH-HHHHHHHhhC------Cccee---e-cc
Confidence            478999999999999999999997 58899998 5555          222 1222211111      00000   0 11


Q ss_pred             HHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       230 l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      -++++ ..||+++-|-.     .+.|+.+..+.++- .+++.-+-+.+- .+|- +.|.+..|.-+
T Consensus       282 ~~e~~~~~~DVliP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~A~-~~L~~~Gi~~~  339 (419)
T 3aoe_E          282 PEEVFGLEAEVLVLAAR-----EGALDGDRARQVQA-QAVVEVANFGLN-PEAE-AYLLGKGALVV  339 (419)
T ss_dssp             TTTGGGSSCSEEEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCBC-HHHH-HHHHHHTCEEE
T ss_pred             chhhhccCceEEEeccc-----ccccccchHhhCCc-eEEEECCCCcCC-HHHH-HHHHHCCCEEE
Confidence            12332 47999998853     56678888888854 488899988864 4443 55555555433

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.91  E-value=0.031  Score=52.56  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=62.7

Q ss_pred             CCCEEEEE-ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cC
Q 019328          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvGIi-G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~s  237 (342)
                      .|++|.|+ |.|.||..+++.+ +..|++|++.+++.++...  ..+++.       .........++.+.+.     ..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~~~lGa-------~~~~~~~~~~~~~~~~~~~~~g~  236 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKCEA--CERLGA-------KRGINYRSEDFAAVIKAETGQGV  236 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH--HHHHTC-------SEEEETTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--HHhcCC-------CEEEeCCchHHHHHHHHHhCCCc
Confidence            58899999 6899999999985 7999999999988764321  122221       1010111223433332     48


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+.+... +     .-...++.++++..++.++.
T Consensus       237 Dvvid~~g~-~-----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          237 DIILDMIGA-A-----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEESCCG-G-----GHHHHHHTEEEEEEEEECCC
T ss_pred             eEEEECCCH-H-----HHHHHHHHhccCCEEEEEEe
Confidence            999988773 1     23567888999999998874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.90  E-value=0.039  Score=52.09  Aligned_cols=94  Identities=14%  Similarity=0.020  Sum_probs=60.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH----Hhh--cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--~s  237 (342)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++..+...  ...++.       .........++.+    +..  ..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~--~~~lGa-------~~vi~~~~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSSSREKLDR--AFALGA-------DHGINRLEEDWVERVYALTGDRGA  258 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEESCHHHHHH--HHHHTC-------SEEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCchhHHH--HHHcCC-------CEEEcCCcccHHHHHHHHhCCCCc
Confidence            588999999999999999985 8999999999988654321  222221       0000001123322    222  57


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+-++.  .+    .-...++.++++..++.++.
T Consensus       259 D~vid~~g--~~----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          259 DHILEIAG--GA----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EEEEEETT--SS----CHHHHHHHEEEEEEEEEECC
T ss_pred             eEEEECCC--hH----HHHHHHHHhhcCCEEEEEec
Confidence            88888876  22    12456778888888888764

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.89  E-value=0.13  Score=47.81  Aligned_cols=104  Identities=21%  Similarity=0.302  Sum_probs=61.4

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc---cCCHHHHhhcCCEE
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVI  240 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~sDiV  240 (342)
                      +|+|+|. |.+|..++..|+ .-|  -+|..+|+......   ....    .+ ...+.....   ..++++.++.||+|
T Consensus         2 KI~IiGa~G~VG~~la~~L~-~~~~~~ev~L~Di~~~~~~---a~dL----~~-~~~~~~l~~~~~t~d~~~a~~~aDvV   72 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGV---AADL----SH-IETRATVKGYLGPEQLPDCLKGCDVV   72 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHH---HHHH----TT-SSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             EEEEECCCChHHHHHHHHHH-hCCCCcEEEEEeCCccHHH---HHHH----hc-cCcCceEEEecCCCCHHHHhCCCCEE
Confidence            7999998 999999999875 445  68999998762211   1111    11 111111111   13688889999999


Q ss_pred             EEcCCCCc---cccc-cc--C----H---hHHccCCCCcEEEecCCCccCCHHH
Q 019328          241 SLHPVLDK---TTYH-LI--N----K---ERLATMKKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       241 ~l~lplt~---~t~~-li--~----~---~~l~~mk~gailIN~sRG~~vd~~a  281 (342)
                      +++.....   +++. ++  |    .   +.+....|++++|+++  .++|.-.
T Consensus        73 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~  124 (314)
T 1mld_A           73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI  124 (314)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred             EECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence            99965322   1111 10  1    1   1223335889999974  4566544

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.88  E-value=0.033  Score=52.27  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=59.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-h-----c
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-R-----E  236 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~-----~  236 (342)
                      .|.+|.|+|.|.||...++.+ +..|+ +|++.+++.++..  +..+++.       .........++.+.+ +     .
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~--~~~~lGa-------~~vi~~~~~~~~~~v~~~t~g~g  235 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSRKHCCD--IALEYGA-------TDIINYKNGDIVEQILKATDGKG  235 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCCHHHHH--HHHHHTC-------CEEECGGGSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHHHhCC-------ceEEcCCCcCHHHHHHHHcCCCC
Confidence            478999999999999999985 89999 8999998865422  2222221       101001112333322 1     4


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .|+|+-++...+     .-...++.++++..++.++
T Consensus       236 ~D~v~d~~g~~~-----~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          236 VDKVVIAGGDVH-----TFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEEECSSCTT-----HHHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCChH-----HHHHHHHHHhcCCEEEEec
Confidence            788888776322     1245667778888888775

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.87  E-value=0.04  Score=53.08  Aligned_cols=77  Identities=13%  Similarity=0.098  Sum_probs=48.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhccCCCC--CccccccCCHHHHhhc--CC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLRE--AD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~--sD  238 (342)
                      ++|+|+|.|.||+.+++.|+ ..|   .+|.++||+..+. +...+.+.... .....  ........++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~-~~g~~~~~V~v~~r~~~~~-~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMA-MNREVFSHITLASRTLSKC-QEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TCTTTCCEEEEEESCHHHH-HHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCceEEEEEECCHHHH-HHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            58999999999999999984 555   4999999987642 22222221100 00000  0001112457788887  89


Q ss_pred             EEEEcCC
Q 019328          239 VISLHPV  245 (342)
Q Consensus       239 iV~l~lp  245 (342)
                      +|+.+.|
T Consensus        79 vVin~ag   85 (405)
T 4ina_A           79 IVLNIAL   85 (405)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999988

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.87  E-value=0.039  Score=51.65  Aligned_cols=93  Identities=23%  Similarity=0.215  Sum_probs=60.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh----h--c
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--E  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~--~  236 (342)
                      .|++|.|.|. |.||..+++.+ +.+|++|++.+++.++..  +...++       ........ .++.+.+    .  .
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~~g-------a~~v~~~~-~~~~~~v~~~~~~~g  227 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIA-KGMGAKVIAVVNRTAATE--FVKSVG-------ADIVLPLE-EGWAKAVREATGGAG  227 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--HHHHHT-------CSEEEESS-TTHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--HHHhcC-------CcEEecCc-hhHHHHHHHHhCCCC
Confidence            5889999998 99999999985 799999999998765432  112221       11110011 2333322    1  4


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+-++...      .-...++.++++..++.++.
T Consensus       228 ~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          228 VDMVVDPIGGP------AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             EEEEEESCC--------CHHHHHHTEEEEEEEEEC--
T ss_pred             ceEEEECCchh------HHHHHHHhhcCCCEEEEEEc
Confidence            78998887632      23567788899999988863

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.80  E-value=0.057  Score=48.56  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ..+.||++-|.|- |.||+.+|++|+ ..|++|+..+++...
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~~~~~~   54 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLG-RLGAKVVVNYANSTK   54 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCHH
Confidence            4799999999987 689999999984 789999987665433

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.78  E-value=0.034  Score=56.22  Aligned_cols=104  Identities=15%  Similarity=0.229  Sum_probs=63.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh------------------hHHHHHHhhhhhhhccCCCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|...-                  ...+...+.....   .....
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~i---NP~v~  398 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI---FPLMD  398 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHH---CTTCE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhH---CCCcE
Confidence            5799999999999999999999985 6776 7888875410                  0111111111000   00000


Q ss_pred             cccc-------------------ccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          222 VTWK-------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       222 ~~~~-------------------~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +...                   ...+++++++++|+|+.|+. +.+++.+++......   +..+|+.+
T Consensus       399 v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa  464 (598)
T 3vh1_A          399 ATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  464 (598)
T ss_dssp             EEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence            0000                   01235678899999999986 667888887765543   33566543

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=94.75  E-value=0.032  Score=51.52  Aligned_cols=104  Identities=14%  Similarity=0.037  Sum_probs=62.5

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~  241 (342)
                      .++.|+|. |++|+.+++.+ ...|++ |...+|.....                 .-.+...+.+++++.+  ..|+++
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l-~~~g~~~V~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~Dv~i   75 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKM-LECGTKIVGGVTPGKGGQ-----------------NVHGVPVFDTVKEAVKETDANASV   75 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHH-HHTTCCEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHCCCEEE
T ss_pred             CEEEEECCCCCHHHHHHHHH-HhCCCeEEEEeCCCCCCc-----------------eECCEeeeCCHHHHhhcCCCCEEE
Confidence            35788899 99999999987 566776 33555532100                 0012334678999998  899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCc-cCCHHHHHHHHHcCCc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPM  291 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~-~vd~~aL~~aL~~g~i  291 (342)
                      +++|  ++...-+-++.++ .+... +|..+.|= .-+++.|.++.++..+
T Consensus        76 i~vp--~~~~~~~v~ea~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi  122 (294)
T 2yv1_A           76 IFVP--APFAKDAVFEAID-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGV  122 (294)
T ss_dssp             ECCC--HHHHHHHHHHHHH-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             EccC--HHHHHHHHHHHHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9999  4322222222333 22232 34444442 2345688888877555

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.75  E-value=0.12  Score=48.62  Aligned_cols=97  Identities=13%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc--ccCCHHHHh------
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVL------  234 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell------  234 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.++++++...  ..++.     .........  ...++.+.+      
T Consensus       179 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~~--a~~l~-----~~~~~~~~~~~~~~~~~~~v~~~t~g  250 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCA-KAAGACPLVITDIDEGRLKF--AKEIC-----PEVVTHKVERLSAEESAKKIVESFGG  250 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEEESCHHHHHH--HHHHC-----TTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHHH--HHHhc-----hhcccccccccchHHHHHHHHHHhCC
Confidence            478999999999999999985 899998 9999887654321  11110     000000000  001122211      


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ...|+|+-++... .+    -...++.++++..++.++-
T Consensus       251 ~g~Dvvid~~g~~-~~----~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          251 IEPAVALECTGVE-SS----IAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECCC
T ss_pred             CCCCEEEECCCCh-HH----HHHHHHHhcCCCEEEEEcc
Confidence            2589999988732 11    2456788999999999874

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=94.71  E-value=0.038  Score=52.49  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=45.4

Q ss_pred             CEEEEEc-cChHHHH-HH----HHHHhcCCcEE----------EEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          166 QTVGVIG-AGRIGSA-YA----RMMVEGFKMNL----------IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       166 ktvGIiG-~G~IG~~-vA----~~l~~a~g~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      .+||||| +|.||+. .+    +.+...-+..+          .++|+++... +.+.+.++       ..    ..+.+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a-~~~a~~~~-------~~----~~~~~   74 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKV-EALAKRFN-------IA----RWTTD   74 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHH-HHHHHHTT-------CC----CEESC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHH-HHHHHHhC-------CC----cccCC
Confidence            4799999 9999998 56    55433333332          3889887642 22222222       10    13579


Q ss_pred             HHHHhhc--CCEEEEcCCC
Q 019328          230 MDEVLRE--ADVISLHPVL  246 (342)
Q Consensus       230 l~ell~~--sDiV~l~lpl  246 (342)
                      ++++++.  .|+|+++.|.
T Consensus        75 ~~~ll~~~~iD~V~i~tp~   93 (383)
T 3oqb_A           75 LDAALADKNDTMFFDAATT   93 (383)
T ss_dssp             HHHHHHCSSCCEEEECSCS
T ss_pred             HHHHhcCCCCCEEEECCCc
Confidence            9999976  8999999994

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.71  E-value=0.16  Score=47.27  Aligned_cols=109  Identities=21%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             CEEEEEc-cChHHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc--CCHHHHhhcCCEE
Q 019328          166 QTVGVIG-AGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~--a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~~sDiV  240 (342)
                      .+|+|+| .|.+|..+|..|+.  .+.-++..+|.....  +......    .+ ..........  .+..+.++.||+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~--~G~a~Dl----~~-~~~~~~v~~~~~~~~~~~~~~aDiv   73 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT--PGVAVDL----SH-IPTAVKIKGFSGEDATPALEGADVV   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTH--HHHHHHH----HT-SCSSEEEEEECSSCCHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCc--hhHHHHh----hC-CCCCceEEEecCCCcHHHhCCCCEE
Confidence            3799999 99999999998754  366789999987621  1111111    11 1111111111  2567788999999


Q ss_pred             EEcCCCC--c-cccc-cc--CH-------hHHccCCCCcEEEecCCCccCCHHHHH
Q 019328          241 SLHPVLD--K-TTYH-LI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       241 ~l~lplt--~-~t~~-li--~~-------~~l~~mk~gailIN~sRG~~vd~~aL~  283 (342)
                      +++.+..  | .||. ++  |.       +.+....|++++++++  .++|.-..+
T Consensus        74 ii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           74 LISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             EECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            9986532  2 1221 22  11       1233346889999996  566665544

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.70  E-value=0.039  Score=50.95  Aligned_cols=38  Identities=24%  Similarity=0.521  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~  199 (342)
                      ..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La-~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLT-RCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCc
Confidence            4699999999999999999999985 4564 788888764

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=94.68  E-value=0.66  Score=42.63  Aligned_cols=69  Identities=16%  Similarity=0.089  Sum_probs=51.2

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      .+.|++|+++|=   +++.++.+..+ ..||++|....|..-.. +.        +.     ..+.....++++.++++|
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~p-~~--------~~-----~~g~~~~~d~~eav~~aD  207 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLL-NMFGAKIGVCGPKTLIP-RD--------VE-----VFKVDVFDDVDKGIDWAD  207 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGSC-TT--------GG-----GGCEEEESSHHHHHHHCS
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HHCCCEEEEECCchhCC-ch--------HH-----HCCCEEEcCHHHHhCCCC
Confidence            478999999997   89999999997 68999999988743110 00        00     112233579999999999


Q ss_pred             EEEEcCCC
Q 019328          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~lpl  246 (342)
                      +|.. +-.
T Consensus       208 vvy~-~~~  214 (291)
T 3d6n_B          208 VVIW-LRL  214 (291)
T ss_dssp             EEEE-CCC
T ss_pred             EEEE-eCc
Confidence            9998 654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.61  E-value=0.14  Score=46.96  Aligned_cols=110  Identities=13%  Similarity=0.112  Sum_probs=72.8

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .++|++|.|+|-.......++.| ...|.+|..+.-....        |         ...+.....++.+.++++|+|+
T Consensus         4 ~~~~mki~v~~~~~~~~~~~~~L-~~~g~~v~~~~~~~~~--------~---------~~~g~~~~~~~~~~~~~~d~ii   65 (300)
T 2rir_A            4 MLTGLKIAVIGGDARQLEIIRKL-TEQQADIYLVGFDQLD--------H---------GFTGAVKCNIDEIPFQQIDSII   65 (300)
T ss_dssp             CCCSCEEEEESBCHHHHHHHHHH-HHTTCEEEEESCTTSS--------C---------CCTTEEECCGGGSCGGGCSEEE
T ss_pred             cccCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeccccc--------c---------ccccceeccchHHHHhcCCEEE
Confidence            36788999999999999999997 6789998876321110        0         0011112345677788999998


Q ss_pred             EcCCCCc----------ccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          242 LHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       242 l~lplt~----------~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      ...|...          .+...++++.++.++++.+++ +   ++ |..++.+++.+..+.-.
T Consensus        66 ~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~-~---g~-~~~d~~~~~~~~gi~v~  123 (300)
T 2rir_A           66 LPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF-S---GI-SNAYLENIAAQAKRKLV  123 (300)
T ss_dssp             CCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE-E---SS-CCHHHHHHHHHTTCCEE
T ss_pred             eccccccCCcccccccccCCccchHHHHhhcCCCCEEE-E---ec-CCHHHHHHHHHCCCEEE
Confidence            7555322          233447899999999998877 2   32 66775666666555544

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=94.60  E-value=0.05  Score=52.03  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=25.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhc--CCcEEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a--~g~~V~~~d~  197 (342)
                      .+|||+|+|+||+.+.|.|...  -+++|.+.+.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd   36 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEec
Confidence            3799999999999999986433  3588876543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.56  E-value=0.15  Score=45.82  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      ..+.||++-|.|- |.||+.+|+.|+ ..|++|+..+++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLA-EEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEccc
Confidence            3689999999997 789999999984 789999999886

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.55  E-value=0.11  Score=49.08  Aligned_cols=30  Identities=27%  Similarity=0.223  Sum_probs=23.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY  195 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~  195 (342)
                      .+|||+|+|+||+.+++.+...-+++|.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV   32 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGV   32 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence            489999999999999998743336887655

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.55  E-value=0.037  Score=52.07  Aligned_cols=102  Identities=13%  Similarity=0.120  Sum_probs=57.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcC---------CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGF---------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~---------g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (342)
                      .+|||||+|.||+.+++.+. ..         +++|. ++|++..+.              .+ .+. .....++++++ 
T Consensus         4 irvgIiG~G~VG~~~~~~l~-~~~~~l~~~g~~~~lvaV~d~~~~~~--------------~~-~~~-~~~~~d~~~ll-   65 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVL-ERAEELSAFGVVPRFLGVLVRDPRKP--------------RA-IPQ-ELLRAEPFDLL-   65 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HTGGGGGGGTEEEEEEEEECSCTTSC--------------CS-SCG-GGEESSCCCCT-
T ss_pred             eEEEEEcCCHHHHHHHHHHH-hChhhHhhcCCCEEEEEEEECCHHHh--------------hc-cCc-ccccCCHHHHh-
Confidence            37999999999999999863 33         46654 557664321              00 111 12345788888 


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHHHHcC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN  289 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~aL~~g  289 (342)
                      +.|+|+.|+|.....+.    -..+.++.|.-+|...-..+ -.-+.|.++.++.
T Consensus        66 ~iDvVve~t~~~~~a~~----~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           66 EADLVVEAMGGVEAPLR----LVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             TCSEEEECCCCSHHHHH----HHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             CCCEEEECCCCcHHHHH----HHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            89999999984421111    11234445544444222222 2445666665554

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=94.51  E-value=0.077  Score=50.01  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=25.1

Q ss_pred             CEEEEEccChHHHHHHHHHHh---cCCcEEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  197 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~---a~g~~V~~~d~  197 (342)
                      .+|||+|+|.||+.+.|.|..   .-+++|.+.+.
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~   37 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE   37 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence            379999999999999998743   23678876654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.47  E-value=0.024  Score=52.93  Aligned_cols=89  Identities=12%  Similarity=0.136  Sum_probs=55.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccc--cccCCHHHH-hhcCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW--KRASSMDEV-LREADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el-l~~sDiV~  241 (342)
                      .+++.|+|+|.+|+.+++.| ...|. |.+.|++++...  ..+ .       +..-...  .....|+++ +++||.++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L-~~~g~-v~vid~~~~~~~--~~~-~-------~~~~i~gd~~~~~~L~~a~i~~a~~vi  182 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRKK--VLR-S-------GANFVHGDPTRVSDLEKANVRGARAVI  182 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTG-GGSCE-EEEESCGGGHHH--HHH-T-------TCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHH-HhCCc-EEEEeCChhhhh--HHh-C-------CcEEEEeCCCCHHHHHhcChhhccEEE
Confidence            56899999999999999997 67888 999999876422  111 1       1100000  011123444 67899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcE
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAI  267 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gai  267 (342)
                      ++++..  ..++.-....+.+.|...
T Consensus       183 ~~~~~d--~~n~~~~~~ar~~~~~~~  206 (336)
T 1lnq_A          183 VDLESD--SETIHCILGIRKIDESVR  206 (336)
T ss_dssp             ECCSSH--HHHHHHHHHHHTTCTTSE
T ss_pred             EcCCcc--HHHHHHHHHHHHHCCCCe
Confidence            998843  344444455666666533

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.30  E-value=0.23  Score=44.11  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcc-Ch--HHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~-G~--IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ++.||++-|.|. |.  ||+.+|+.|+ ..|++|+..+++.+
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLH-EAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEecCchH
Confidence            688999999998 55  9999999985 77999999988754

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.28  E-value=0.047  Score=51.56  Aligned_cols=95  Identities=16%  Similarity=0.111  Sum_probs=62.8

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cC
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~s  237 (342)
                      .|++|.|+| .|.||..+++.+ +.+|++|++.+++.++..  +...++       ..........++.+.+.     ..
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~~~~~~--~~~~~G-------a~~~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKSA--FLKSLG-------CDRPINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHH-HHTTCEEEEEESSHHHHH--HHHHTT-------CSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEECCHHHHH--HHHHcC-------CcEEEecCChhHHHHHHHhcCCCC
Confidence            478999999 799999999985 789999999998865421  111221       11000011124444332     47


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      |+|+.++.. +     .-...++.|+++..++.++..
T Consensus       233 D~vid~~g~-~-----~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          233 DVVYESVGG-A-----MFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             EEEEECSCT-H-----HHHHHHHHEEEEEEEEECCCG
T ss_pred             CEEEECCCH-H-----HHHHHHHHHhcCCEEEEEeCC
Confidence            999998873 1     234577888999999988753

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.24  E-value=0.051  Score=50.32  Aligned_cols=94  Identities=13%  Similarity=0.080  Sum_probs=61.8

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------hc
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (342)
                      .|++|.|+| .|.||..+++.+ +..|++|++.+++..+..  +...++.       .........++.+.+      ..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~~Ga-------~~~~~~~~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKAA--HAKALGA-------WETIDYSHEDVAKRVLELTDGKK  209 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHH--HHHHHTC-------SEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHHcCC-------CEEEeCCCccHHHHHHHHhCCCC
Confidence            588999999 899999999985 789999999998765432  1122221       000001112333222      25


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+.++..  +    .-...++.++++..++.++.
T Consensus       210 ~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          210 CPVVYDGVGQ--D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             EEEEEESSCG--G----GHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhcCCCEEEEEec
Confidence            7899888763  1    23467888999999999864

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=94.23  E-value=0.067  Score=49.41  Aligned_cols=104  Identities=17%  Similarity=0.082  Sum_probs=61.5

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--c-CCEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E-ADVI  240 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~-sDiV  240 (342)
                      .++.|+|. |++|+.+++.+ ...|.+ |..++|.....                 .-.+...+.+++++.+  . .|++
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l-~~~g~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~~Dva   75 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAM-LEYGTKVVAGVTPGKGGS-----------------EVHGVPVYDSVKEALAEHPEINTS   75 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHCTTCCEE
T ss_pred             CEEEEECCCCCHHHHHHHHH-HhCCCcEEEEeCCCCCCc-----------------eECCEeeeCCHHHHhhcCCCCCEE
Confidence            34777798 99999999987 456887 44556542100                 0012334678999987  5 9999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHHHHHcCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~aL~~g~i  291 (342)
                      ++++|- +.+...+ ++..+ .+... +|..+.|=. -+++.|.++.++..+
T Consensus        76 Ii~vp~-~~~~~~v-~ea~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi  123 (297)
T 2yv2_A           76 IVFVPA-PFAPDAV-YEAVD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGA  123 (297)
T ss_dssp             EECCCG-GGHHHHH-HHHHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCH-HHHHHHH-HHHHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999993 2233322 22222 22222 333444422 345688888877554

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.22  E-value=0.053  Score=50.41  Aligned_cols=94  Identities=15%  Similarity=0.148  Sum_probs=59.9

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------hc
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (342)
                      .|++|.|+| .|.||...++.+ +..|++|++.+++.++..  +..+++       ..........++.+.+      ..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~~g-------a~~~~~~~~~~~~~~~~~~~~~~g  217 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVASTDEKLK--IAKEYG-------AEYLINASKEDILRQVLKFTNGKG  217 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSHHHHH--HHHHTT-------CSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHHcC-------CcEEEeCCCchHHHHHHHHhCCCC
Confidence            588999999 899999999985 799999999999765432  222221       1100001112332222      14


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+.+...  +    .-...++.++++..++.++.
T Consensus       218 ~D~vid~~g~--~----~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          218 VDASFDSVGK--D----TFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEEEECCGG--G----GHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhccCCEEEEEcC
Confidence            6888887762  1    23456777888888888753

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.21  E-value=0.092  Score=48.73  Aligned_cols=79  Identities=19%  Similarity=0.127  Sum_probs=46.5

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh--HHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhh--
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLR--  235 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~--  235 (342)
                      ...++|.|.|. |.||+.+++.| ...|.+|++.+|+...  .........    ...+..-.  ......++.++++  
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~l----~~~~v~~~~~Dl~d~~~l~~~~~~~   82 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATAS-LDAHRPTYILARPGPRSPSKAKIFKAL----EDKGAIIVYGLINEQEAMEKILKEH   82 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHHHHHHHH----HHTTCEEEECCTTCHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHHH-HHCCCCEEEEECCCCCChhHHHHHHHH----HhCCcEEEEeecCCHHHHHHHHhhC
Confidence            34678999998 99999999998 4678999999987611  111100000    00111000  0111235677788  


Q ss_pred             cCCEEEEcCCC
Q 019328          236 EADVISLHPVL  246 (342)
Q Consensus       236 ~sDiV~l~lpl  246 (342)
                      ++|+|+.+...
T Consensus        83 ~~d~Vi~~a~~   93 (346)
T 3i6i_A           83 EIDIVVSTVGG   93 (346)
T ss_dssp             TCCEEEECCCG
T ss_pred             CCCEEEECCch
Confidence            89998887763

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.19  E-value=0.025  Score=51.73  Aligned_cols=74  Identities=22%  Similarity=0.196  Sum_probs=44.9

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|+|+ |.||+.+++.+...-|+++. ++|+........   ..+.   ..+....+.....++++++..+|+|+-+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~---d~~~---~~g~~~~~v~~~~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGE---LAGAGKTGVTVQSSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTC---SSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhh---hHHH---HcCCCcCCceecCCHHHHhcCCCEEEEc
Confidence            48999998 99999999986445678876 677754320000   0000   0011111222245788888899999955


Q ss_pred             CC
Q 019328          244 PV  245 (342)
Q Consensus       244 lp  245 (342)
                      .+
T Consensus        80 t~   81 (273)
T 1dih_A           80 TR   81 (273)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.15  E-value=0.098  Score=49.30  Aligned_cols=31  Identities=23%  Similarity=0.420  Sum_probs=24.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhc--CCcEEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a--~g~~V~~~d  196 (342)
                      .+|||+|+|.||+.+.|.|...  -+++|.+.+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            3899999999999999987433  358887654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.15  E-value=0.15  Score=49.50  Aligned_cols=97  Identities=22%  Similarity=0.138  Sum_probs=60.0

Q ss_pred             CCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHH-HHHhhhhhhhccCCCCCccccccCCHHH
Q 019328          164 KGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDE  232 (342)
Q Consensus       164 ~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (342)
                      .|++|+|+|+.          .-...+++.| ...|++|.+|||..+.... .....|+.   . ...........++.+
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~  386 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYIE---S-KIPHVSSLLVSDLDE  386 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHHH---H-TSHHHHTTBCSCHHH
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChhhccchhhhhcc---c-ccccccccccCCHHH
Confidence            68999999997          5678899998 6899999999997432110 00000100   0 000000012357888


Q ss_pred             HhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       233 ll~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      .++.||.|+++..- ++-+.+ +   .+.|+ +.+++++
T Consensus       387 ~~~~~d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~  419 (436)
T 1mv8_A          387 VVASSDVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL  419 (436)
T ss_dssp             HHHHCSEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred             HHhCCcEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence            99999999999874 333221 1   44566 6788887

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.15  E-value=0.26  Score=48.51  Aligned_cols=112  Identities=13%  Similarity=0.084  Sum_probs=69.9

Q ss_pred             ccCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhccCCCCCccccccCC
Q 019328          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       162 ~l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      .+.|++|+|+|+-          .-...+++.| ...|++|.+|||......  .+....++....     ........+
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  405 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHL-MEEHAKLSVYDPKVQKSQMLNDLASVTSAQDV-----ERLITVESD  405 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHHHHHHHHHSCHHHH-----HHHEEEESS
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHH-HHCCCEEEEECCCCCchhhHHHHHhhhccccc-----cCceeecCC
Confidence            4799999999974          4667888987 688999999999864321  111100000000     000112357


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHh-HHccCCCCcEEEecCCCccCCHHHHH
Q 019328          230 MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       230 l~ell~~sDiV~l~lplt~~t~~li~~~-~l~~mk~gailIN~sRG~~vd~~aL~  283 (342)
                      +.+.++.+|.|++++.- ++-+. ++-+ ..+.|+...+++++ |+ ++|.+.+.
T Consensus       406 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~  456 (481)
T 2o3j_A          406 PYAAARGAHAIVVLTEW-DEFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKALR  456 (481)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHHH
T ss_pred             HHHHHcCCCEEEEcCCc-HHhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHHH
Confidence            78899999999999874 33333 3544 44567776688886 55 35655443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.12  E-value=0.053  Score=48.83  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+.||++-|.|-   |.||+.+|+.|+ ..|++|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~-~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            478999999997   699999999984 77999999998764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=94.08  E-value=1  Score=43.97  Aligned_cols=168  Identities=17%  Similarity=0.208  Sum_probs=107.7

Q ss_pred             CCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhc
Q 019328          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (342)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a  187 (342)
                      ..|+|.|+.-   +-+|=-+++-+|+.+|-.                     |+.|...+|.|.|.|.-|-.+|+.+ ..
T Consensus       186 ~~ipvFnDD~---qGTA~V~lAgllnAlki~---------------------gk~l~d~riV~~GAGaAGigia~ll-~~  240 (487)
T 3nv9_A          186 CDIPVWHDDQ---QGTASVTLAGLLNALKLV---------------------KKDIHECRMVFIGAGSSNTTCLRLI-VT  240 (487)
T ss_dssp             CSSCEEETTT---HHHHHHHHHHHHHHHHHH---------------------TCCGGGCCEEEECCSHHHHHHHHHH-HH
T ss_pred             ccCCcccccc---chHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHH-HH
Confidence            4799999874   345667788888777532                     4578889999999999999999997 57


Q ss_pred             CCc---EEEEEcCCh---hhH--HHH-----HHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019328          188 FKM---NLIYYDLYQ---ATR--LEK-----FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       188 ~g~---~V~~~d~~~---~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li  254 (342)
                      .|+   +|+.+|+.-   +.+  ...     +...+   .+....     ....+|.|+++.+|+++=. ...  ..+.|
T Consensus       241 ~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~---A~~~n~-----~~~~~L~eav~~adVlIG~-S~~--~pg~f  309 (487)
T 3nv9_A          241 AGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEI---CETTNP-----SKFGSIAEACVGADVLISL-STP--GPGVV  309 (487)
T ss_dssp             TTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHH---HHHSCT-----TCCCSHHHHHTTCSEEEEC-CCS--SCCCC
T ss_pred             cCCCcccEEEEeccccccCCcchhhhhcccHHHHHH---HHhccc-----ccCCCHHHHHhcCCEEEEe-ccc--CCCCC
Confidence            898   799999762   111  111     00011   111110     0235899999999976544 211  14789


Q ss_pred             CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC-ccEEEeecCCCCCCCCCCccCCCceEEcCCCC
Q 019328          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (342)
Q Consensus       255 ~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia  322 (342)
                      .++.++.|.+.+++.=.|.-..  |-.-.+|.+.|+ |.+-|-     -+.|    -+..|+++-|-++
T Consensus       310 t~e~V~~Ma~~PIIFaLSNPtp--Ei~pe~A~~~G~aIvATGr-----sd~P----nQ~NN~liFPGI~  367 (487)
T 3nv9_A          310 KAEWIKSMGEKPIVFCCANPVP--EIYPYEAKEAGAYIVATGR-----GDFP----NQVNNSVGFPGIL  367 (487)
T ss_dssp             CHHHHHTSCSSCEEEECCSSSC--SSCHHHHHHTTCSEEEESC-----TTSS----SBCCGGGTHHHHH
T ss_pred             CHHHHHhhcCCCEEEECCCCCc--cCCHHHHHHhCCEEEEECC-----CCCc----ccCcceeEcchhh
Confidence            9999999999999998887654  222223333555 333321     1111    3557788887654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.06  E-value=0.042  Score=51.28  Aligned_cols=94  Identities=15%  Similarity=0.112  Sum_probs=60.6

Q ss_pred             CCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------hc
Q 019328          164 KGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (342)
                      .|++|.|+|.| .||...++.+ +.+|++|++.+++.++...  ...++.       .........++.+.+      ..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~~~lga-------~~~~~~~~~~~~~~~~~~~~~~g  213 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHTEE--LLRLGA-------AYVIDTSTAPLYETVMELTNGIG  213 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSSTTHHH--HHHHTC-------SEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--HHhCCC-------cEEEeCCcccHHHHHHHHhCCCC
Confidence            58899999998 9999999985 7899999999987654321  112221       100001112333322      25


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+.++.. +.+     .+.++.++++..++.++-
T Consensus       214 ~Dvvid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          214 ADAAIDSIGG-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEEEEESSCH-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             CcEEEECCCC-hhH-----HHHHHHhcCCCEEEEEee
Confidence            7999888763 222     345578899999999874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.05  E-value=0.075  Score=45.90  Aligned_cols=73  Identities=15%  Similarity=0.018  Sum_probs=47.5

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|.|.| .|.||+.+++.| ..-|.+|++.+|++..... ....+    .   ..........++.++++.+|+|+.+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~-~~~~~----~---~~~~Dl~d~~~~~~~~~~~d~vi~~a   75 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKI-ENEHL----K---VKKADVSSLDEVCEVCKGADAVISAF   75 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCCC-CCTTE----E---EECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccchh-ccCce----E---EEEecCCCHHHHHHHhcCCCEEEEeC
Confidence            6899999 599999999998 5779999999998654210 00000    0   00000111235677889999999887


Q ss_pred             CCC
Q 019328          245 VLD  247 (342)
Q Consensus       245 plt  247 (342)
                      ...
T Consensus        76 ~~~   78 (227)
T 3dhn_A           76 NPG   78 (227)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            644

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.05  E-value=0.031  Score=52.26  Aligned_cols=95  Identities=13%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcC--CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccccc-CC-HHHHhh--cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SS-MDEVLR--EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~ell~--~s  237 (342)
                      .|.+|.|+|.|.||...++.+ +.+  |++|++.+++.++..  +..+++       ......... .+ .+++..  ..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqla-k~~~~Ga~Vi~~~~~~~~~~--~~~~lG-------a~~vi~~~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQIL-KALMKNITIVGISRSKKHRD--FALELG-------ADYVSEMKDAESLINKLTDGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHH-HHHCTTCEEEEECSCHHHHH--HHHHHT-------CSEEECHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHH--HHHHhC-------CCEEeccccchHHHHHhhcCCCc
Confidence            688999999999999999985 788  999999998765432  112222       100000000 01 122221  57


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+-++.... +    -...++.++++..++.++.
T Consensus       240 D~vid~~g~~~-~----~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          240 SIAIDLVGTEE-T----TYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             EEEEESSCCHH-H----HHHHHHHEEEEEEEEECCC
T ss_pred             cEEEECCCChH-H----HHHHHHHhhcCCEEEEeCC
Confidence            99998887321 1    2446677888888887763

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.05  E-value=0.14  Score=50.06  Aligned_cols=88  Identities=16%  Similarity=0.224  Sum_probs=60.5

Q ss_pred             cccCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      ..+.|++|+|+|+.          .=...+++.| ...|++|.+|||...+....   .++          .......++
T Consensus       329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L-~~~Ga~V~~~DP~~~~~~~~---~~~----------~~~~~~~~~  394 (444)
T 3vtf_A          329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL-LERGARVYVHDPMAMEKARA---VLG----------DSVTYVEDP  394 (444)
T ss_dssp             TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECSSTHHHHHH---HHG----------GGSEECSCH
T ss_pred             cccCCCEEEEEeeecCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChHHHH---hcC----------CCceecCCH
Confidence            36899999999986          1267888987 68999999999986432211   111          112335689


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEec
Q 019328          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       231 ~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~  271 (342)
                      +++++++|.|+++.+- ++-+.+ +      + ++.+++++
T Consensus       395 ~~a~~~aDavvi~t~h-~ef~~l-d------~-~~~vv~D~  426 (444)
T 3vtf_A          395 QALLDQVEGVIIATAW-PQYEGL-D------Y-RGKVVVDG  426 (444)
T ss_dssp             HHHHHHCSEEEECSCC-GGGGGS-C------C-TTCEEEES
T ss_pred             HHHHhCCCEEEEccCC-HHHhCC-C------c-CCCEEEEC
Confidence            9999999999999873 232222 1      2 36678875

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=94.03  E-value=3.8  Score=38.07  Aligned_cols=101  Identities=13%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             ccCCCEEEE-----EccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328          162 LLKGQTVGV-----IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       162 ~l~gktvGI-----iG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      .+. .+|++     +|=+++.++.+..+ ..||++|....|..-...+...              .......++++.+++
T Consensus       166 ~l~-l~ia~a~~~~vGD~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~--------------~~~~~~~d~~eav~~  229 (324)
T 1js1_X          166 RPK-VVMTWAPHPRPLPQAVPNSFAEWM-NATDYEFVITHPEGYELDPKFV--------------GNARVEYDQMKAFEG  229 (324)
T ss_dssp             SCE-EEEECCCCSSCCCSHHHHHHHHHH-HTSSSEEEEECCTTCCCCHHHH--------------TTCEEESCHHHHHTT
T ss_pred             Cee-EEEEEEcccccCCcchHHHHHHHH-HHCCCEEEEeCCcccCCChhhc--------------cceEEECCHHHHhCC
Confidence            466 89999     99999999999997 6899999998875321101100              012335789999999


Q ss_pred             CCEEEEcCCCC--c------c---cccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          237 ADVISLHPVLD--K------T---TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       237 sDiV~l~lplt--~------~---t~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      +|+|..-.-..  .      .   ..-.++.+.++.+| +++|.-+.   ||.=|+.
T Consensus       230 aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~  285 (324)
T 1js1_X          230 ADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN-NAYFMHCLPVRRNMIVTD  285 (324)
T ss_dssp             CSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS-SCEEECCSCCCBTTTBCH
T ss_pred             CCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC-CcEEECCCCCCCCcccCH
Confidence            99998843311  0      0   12345778888888 77777664   4554443

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=94.00  E-value=0.12  Score=46.56  Aligned_cols=40  Identities=23%  Similarity=0.152  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ..+.||++-|.|- |.||+.+|+.|+ ..|++|+..+++...
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            4578999999986 899999999984 679999999887643

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=93.97  E-value=0.41  Score=45.20  Aligned_cols=110  Identities=14%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             cccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ..|.|++|++||=| ++.++.+..+ ..||++|.+..|..-...+.+.+.... .......+.......+++|.++++|+
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l-~~lG~~v~~~~P~~~~~~~~i~~~~~~-~a~~~~~g~~~~~~~d~~eav~~aDV  261 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAA-TKMGVNVAVATPRGYEIPSHIVELIQK-AREGVQSPGNLTQTTVPEVAVKDADV  261 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHH-HHTTCSSCCCEEEESCHHHHTTTCSE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHH-hhhhccCCCeEEEECCHHHHhcCCCE
Confidence            46899999999975 5677777776 589999999887532101111110000 00000111223345799999999999


Q ss_pred             EEEcC--CCCccc----------ccccCHhHHcc--CCCCcEEEecC
Q 019328          240 ISLHP--VLDKTT----------YHLINKERLAT--MKKEAILVNCS  272 (342)
Q Consensus       240 V~l~l--plt~~t----------~~li~~~~l~~--mk~gailIN~s  272 (342)
                      |..-.  +...+.          .--++.+.++.  +|++++|.-+.
T Consensus       262 vytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          262 IVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             EEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             EEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            98743  222111          12468888888  88888888764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.96  E-value=0.06  Score=51.12  Aligned_cols=95  Identities=16%  Similarity=0.122  Sum_probs=58.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc---cCCHHH----Hhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDE----VLR  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e----ll~  235 (342)
                      .|.+|.|+|.|.+|...++.+ +.+| .+|++.+++.++..  +..+++       ........   ..++.+    +..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~~~~lG-------a~~vi~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNRLK--LAEEIG-------ADLTLNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHHHH--HHHHTT-------CSEEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHH-HHcCCceEEEEcCCHHHHH--HHHHcC-------CcEEEeccccCcchHHHHHHHHhC
Confidence            478999999999999999985 8999 59999998865432  112222       10000000   011211    211


Q ss_pred             --cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 --~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                        ..|+|+-++.....     -...++.++++..++.++.
T Consensus       265 g~g~Dvvid~~g~~~~-----~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          265 GRGADFILEATGDSRA-----LLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TSCEEEEEECSSCTTH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence              47888888763221     2446677888888888764

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.95  E-value=0.077  Score=49.51  Aligned_cols=94  Identities=13%  Similarity=0.069  Sum_probs=60.4

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH----Hh--hc
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VL--RE  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll--~~  236 (342)
                      .|++|.|+|. |.||..+++.+ +.+|++|++.+++..+...  ...++.       .........++.+    +.  ..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a-~~~G~~Vi~~~~~~~~~~~--~~~~ga-------~~~~d~~~~~~~~~~~~~~~~~~  235 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDKLRR--AKALGA-------DETVNYTHPDWPKEVRRLTGGKG  235 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHH-HHTTCEEEEEESSHHHHHH--HHHHTC-------SEEEETTSTTHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHhcCC-------CEEEcCCcccHHHHHHHHhCCCC
Confidence            5889999999 99999999985 7899999999988654321  112211       0000001112222    22  25


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+.+.. .+     .-...++.|+++..++.++.
T Consensus       236 ~d~vi~~~g-~~-----~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          236 ADKVVDHTG-AL-----YFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             EEEEEESSC-SS-----SHHHHHHHEEEEEEEEESSC
T ss_pred             ceEEEECCC-HH-----HHHHHHHhhccCCEEEEEec
Confidence            788888876 22     23556778888888888874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.95  E-value=0.071  Score=49.29  Aligned_cols=94  Identities=13%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHH-HHh-----hc
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVL-----RE  236 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell-----~~  236 (342)
                      .|++|.|.| .|.||..+++.+ +..|++|++.+++......  ...++.       .........++. ++.     ..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~V~~~~~~~~~~~~--~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~  209 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQKAQS--ALKAGA-------WQVINYREEDLVERLKEITGGKK  209 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHHHHH--HHHHTC-------SEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--HHHcCC-------CEEEECCCccHHHHHHHHhCCCC
Confidence            488999999 799999999986 7889999999988654211  111111       000000112222 222     14


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+++.+..  .++    -...++.|+++..++.++.
T Consensus       210 ~D~vi~~~g--~~~----~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          210 VRVVYDSVG--RDT----WERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEEEECSC--GGG----HHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCc--hHH----HHHHHHHhcCCCEEEEEec
Confidence            789988876  322    2567788899989988864

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=93.93  E-value=0.12  Score=46.77  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+.||++-|.|-   |.||+.+|+.|+ ..|++|+..+|+..
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFH-REGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            488999999998   699999999984 67999999998763

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=93.91  E-value=0.042  Score=51.98  Aligned_cols=31  Identities=19%  Similarity=0.431  Sum_probs=24.2

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEc
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d  196 (342)
                      .+|||+| +|.||+.+.+.|...=.+++.+..
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~   36 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS   36 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence            5899999 899999999987433346777663

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.90  E-value=0.1  Score=46.57  Aligned_cols=37  Identities=24%  Similarity=0.202  Sum_probs=31.3

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEE-cCCh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQ  199 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~-d~~~  199 (342)
                      ++.||++-|.|- |.||+.+|++|+ .-|++|+.. ++..
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~~   43 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFA-QEGANVVLTYNGAA   43 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECSSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCH
Confidence            688999999997 789999999985 779999987 4443

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.90  E-value=0.045  Score=49.32  Aligned_cols=70  Identities=9%  Similarity=0.096  Sum_probs=45.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc-CCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-sDiV~l  242 (342)
                      .+++|.|.|.|.||+.+++.| ..-|.+|++.+|+......    .+       ...........+++++++. +|+|+.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~----~~-------~~~~~Dl~d~~~~~~~~~~~~d~vih   69 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRL-TAQGHEVTGLRRSAQPMPA----GV-------QTLIADVTRPDTLASIVHLRPEILVY   69 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHH-HHTTCCEEEEECTTSCCCT----TC-------CEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcccccc----CC-------ceEEccCCChHHHHHhhcCCCCEEEE
Confidence            367899999999999999998 4679999999987543100    00       0000001112345566766 999987


Q ss_pred             cCC
Q 019328          243 HPV  245 (342)
Q Consensus       243 ~lp  245 (342)
                      +..
T Consensus        70 ~a~   72 (286)
T 3gpi_A           70 CVA   72 (286)
T ss_dssp             CHH
T ss_pred             eCC
Confidence            754

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.79  E-value=0.046  Score=50.59  Aligned_cols=93  Identities=13%  Similarity=0.131  Sum_probs=63.0

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC-HHHHhhcCCEEE
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~sDiV~  241 (342)
                      .|.+|.|+| .|.+|...++.+ +.+|++|++.++..+   .++..+++.       .........+ +.+.+...|+|+
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~~~~~---~~~~~~lGa-------~~~i~~~~~~~~~~~~~g~D~v~  220 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTASKRN---HAFLKALGA-------EQCINYHEEDFLLAISTPVDAVI  220 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEECHHH---HHHHHHHTC-------SEEEETTTSCHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeccch---HHHHHHcCC-------CEEEeCCCcchhhhhccCCCEEE
Confidence            578999997 999999999985 899999998875332   222222221       1111111234 666667899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      -++.. +.    + ...++.++++..++.++.
T Consensus       221 d~~g~-~~----~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          221 DLVGG-DV----G-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             ESSCH-HH----H-HHHGGGEEEEEEEEECCS
T ss_pred             ECCCc-HH----H-HHHHHhccCCCEEEEeCC
Confidence            98872 11    2 567888999999998864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.77  E-value=0.099  Score=48.84  Aligned_cols=93  Identities=16%  Similarity=0.224  Sum_probs=58.7

Q ss_pred             CCCEEEEE-ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cC
Q 019328          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvGIi-G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~s  237 (342)
                      .|++|.|+ |.|.||...++.+ +.+|++|++.+++..+..  +..+++.       ... .....++.+.+.     ..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~~~~lGa-------~~v-i~~~~~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIA-KAYGLRVITTASRNETIE--WTKKMGA-------DIV-LNHKESLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCSHHHHH--HHHHHTC-------SEE-ECTTSCHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--HHHhcCC-------cEE-EECCccHHHHHHHhCCCCc
Confidence            68999999 7999999999985 799999999999765432  1122221       100 111123333322     47


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      |+|+-++.. +.    .-...++.++++..+|.++
T Consensus       219 Dvv~d~~g~-~~----~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          219 DYVFCTFNT-DM----YYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEEEESSCH-HH----HHHHHHHHEEEEEEEEESS
T ss_pred             cEEEECCCc-hH----HHHHHHHHhccCCEEEEEC
Confidence            888887662 11    1134567778888887764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.74  E-value=0.066  Score=50.69  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~  198 (342)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|+.
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La-~aGvg~i~lvD~D  151 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILA-TSGIGEIILIDND  151 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-hCCCCeEEEECCC
Confidence            4689999999999999999999985 5565 78888875

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=93.74  E-value=0.067  Score=50.53  Aligned_cols=93  Identities=15%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChh------------------hHHHHHHhhhhhhhccCCCCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|||+|.+|.++|+.|+ ..|. ++..+|...-                  .+.+.....    +..-. ..
T Consensus        32 ~~L~~~~VlivG~GGlG~~ia~~La-~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~----l~~ln-p~  105 (346)
T 1y8q_A           32 KRLRASRVLLVGLKGLGAEIAKNLI-LAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLER----AQNLN-PM  105 (346)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHH----HHHTC-TT
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHH----HHhHC-CC
Confidence            4689999999999999999999985 4565 7888875421                  011111111    11000 00


Q ss_pred             cccc-c----cCCHHHHhhcCCEEEEcCCCCcccccccCHhHHc
Q 019328          222 VTWK-R----ASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       222 ~~~~-~----~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~  260 (342)
                      .... .    ....+++++++|+|+.+.- +.+++..+++...+
T Consensus       106 v~v~~~~~~~~~~~~~~~~~~dvVv~~~d-~~~~r~~ln~~~~~  148 (346)
T 1y8q_A          106 VDVKVDTEDIEKKPESFFTQFDAVCLTCC-SRDVIVKVDQICHK  148 (346)
T ss_dssp             SEEEEECSCGGGCCHHHHTTCSEEEEESC-CHHHHHHHHHHHHH
T ss_pred             eEEEEEecccCcchHHHhcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            1010 0    0124678899999988764 67777777765444

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.73  E-value=0.045  Score=52.58  Aligned_cols=40  Identities=23%  Similarity=0.532  Sum_probs=32.7

Q ss_pred             ccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       158 ~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      +.+....+++|+|+|-|.+|+.+++.+ +.+|.+|+++| ++
T Consensus        17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa-~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           17 FQGHMWNSRKVGVLGGGQLGRMLVESA-NRLNIQVNVLD-AD   56 (403)
T ss_dssp             ----CCSCCEEEEECCSHHHHHHHHHH-HHHTCEEEEEE-ST
T ss_pred             EeccCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEE-CC
Confidence            445667799999999999999999996 78999999999 54

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.69  E-value=0.13  Score=44.74  Aligned_cols=73  Identities=18%  Similarity=0.130  Sum_probs=48.6

Q ss_pred             cCCCEEEEEc-cChHHHHHHHHHHhcC--CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcC
Q 019328          163 LKGQTVGVIG-AGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (342)
Q Consensus       163 l~gktvGIiG-~G~IG~~vA~~l~~a~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~s  237 (342)
                      ..++++.|.| .|.||+.+++.|+ ..  |.+|++.+|++... +..         .......  ......+++++++..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~-~~~~g~~V~~~~r~~~~~-~~~---------~~~~~~~~~D~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGK-EKI---------GGEADVFIGDITDADSINPAFQGI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHH-HTTTTCEEEEEESCHHHH-HHT---------TCCTTEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHH-hcCCCcEEEEEEcCCCch-hhc---------CCCeeEEEecCCCHHHHHHHHcCC
Confidence            3578999999 5999999999985 55  89999999986432 110         0000000  011123567788999


Q ss_pred             CEEEEcCCC
Q 019328          238 DVISLHPVL  246 (342)
Q Consensus       238 DiV~l~lpl  246 (342)
                      |+|+.+...
T Consensus        71 d~vi~~a~~   79 (253)
T 1xq6_A           71 DALVILTSA   79 (253)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeccc
Confidence            999988654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.64  E-value=0.31  Score=45.99  Aligned_cols=97  Identities=19%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh---hcCCE
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READV  239 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sDi  239 (342)
                      .|++|.|.| .|.||..+++.+ +..|++|++.++ .++.  ++..+++       ..........++.+.+   ...|+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~~-~~~~--~~~~~lG-------a~~v~~~~~~~~~~~~~~~~g~D~  251 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVCS-QDAS--ELVRKLG-------ADDVIDYKSGSVEEQLKSLKPFDF  251 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC-GGGH--HHHHHTT-------CSEEEETTSSCHHHHHHTSCCBSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEeC-hHHH--HHHHHcC-------CCEEEECCchHHHHHHhhcCCCCE
Confidence            589999999 799999999985 789999998874 3221  1222222       1100001112333322   35899


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |+-++.....+    -...++.++++..++.++...
T Consensus       252 vid~~g~~~~~----~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          252 ILDNVGGSTET----WAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             EEESSCTTHHH----HGGGGBCSSSCCEEEESCCSH
T ss_pred             EEECCCChhhh----hHHHHHhhcCCcEEEEeCCCc
Confidence            99988743111    134567899999999998543

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=93.63  E-value=0.51  Score=46.53  Aligned_cols=116  Identities=19%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEE--------cCCh--hhHHHHHHhhhhhhhccCCCCCccccccCCHH
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~--------d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      +|.|+||.|-|+|++|+..|+.| ..+|++|++.        |+.-  ......+....+...   ...  +.....+ +
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L-~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~---~~~--~a~~~~~-~  313 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYL-HRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTIL---GFP--KAKIYEG-S  313 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSST---TCT--TSEEECS-C
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCee---ccc--Cceeecc-c
Confidence            68999999999999999999997 6899999873        2221  111222222111100   000  0111111 1


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       232 ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      -+-..||+.+-|.     +.+.|+.+...+++ -.+++--+.+.+ ..+| .+.|.+..|.
T Consensus       314 il~~~~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          314 ILEVDCDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNIM  366 (501)
T ss_dssp             GGGSCCSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cccccceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCCE
Confidence            1235799988774     45778888888886 457888888874 5544 4566665553

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.63  E-value=0.077  Score=49.38  Aligned_cols=95  Identities=18%  Similarity=0.185  Sum_probs=60.8

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccccCCHHHHhh-----c
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~-----~  236 (342)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++..+.... ...++       .... ......++.+.+.     .
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a-~~~G~~V~~~~~~~~~~~~~-~~~~g-------~~~~~d~~~~~~~~~~~~~~~~~~  225 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLA-KMMGCYVVGSAGSKEKVDLL-KTKFG-------FDDAFNYKEESDLTAALKRCFPNG  225 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHH-HHTSC-------CSEEEETTSCSCSHHHHHHHCTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH-HHHcC-------CceEEecCCHHHHHHHHHHHhCCC
Confidence            5889999997 99999999986 78999999999876542111 10111       1000 0001123333332     4


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+.+... +     .-...++.++++..++.++-
T Consensus       226 ~d~vi~~~g~-~-----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          226 IDIYFENVGG-K-----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEEEESSCH-H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             CcEEEECCCH-H-----HHHHHHHHHhcCCEEEEEcc
Confidence            7999888762 2     23556788888888888764

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=93.62  E-value=0.055  Score=47.29  Aligned_cols=77  Identities=12%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             cCCCEEEEEc-cChHHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 l~gktvGIiG-~G~IG~~vA~~l~~a~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +.+|++.|.| .|.||+.+++.|+ .-|.  +|++.+|++...........       ...........+++++++..|+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~-~~G~~~~V~~~~r~~~~~~~~~~~~~-------~~~~~D~~d~~~~~~~~~~~d~   87 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEEAYKNV-------NQEVVDFEKLDDYASAFQGHDV   87 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSGGGGGC-------EEEECCGGGGGGGGGGGSSCSE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHH-cCCCCCEEEEEEcCCCCccccccCCc-------eEEecCcCCHHHHHHHhcCCCE
Confidence            5688999999 5999999999984 6788  99999987643110000000       0000011123456778889999


Q ss_pred             EEEcCCCC
Q 019328          240 ISLHPVLD  247 (342)
Q Consensus       240 V~l~lplt  247 (342)
                      |+.+....
T Consensus        88 vi~~ag~~   95 (242)
T 2bka_A           88 GFCCLGTT   95 (242)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99987654

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=93.61  E-value=0.35  Score=45.70  Aligned_cols=101  Identities=13%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      +-.+||||| .|..|+++.++|..-=..++.......... ..+.+.+.. ++    ...... ..+.+++++++|+|++
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG-~~~~~~~p~-~~----~~l~~~-~~~~~~~~~~~Dvvf~   84 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAG-KKLEEIFPS-TL----ENSILS-EFDPEKVSKNCDVLFT   84 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTT-SBHHHHCGG-GC----CCCBCB-CCCHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCccccc-CChHHhChh-hc----cCceEE-eCCHHHhhcCCCEEEE
Confidence            456899997 599999999998533345666554322110 001011110 11    111111 1356666688999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      |+|...      ..+....+ .|+.+|+.|.--=.+
T Consensus        85 alp~~~------s~~~~~~~-~g~~VIDlSsdfRl~  113 (351)
T 1vkn_A           85 ALPAGA------SYDLVREL-KGVKIIDLGADFRFD  113 (351)
T ss_dssp             CCSTTH------HHHHHTTC-CSCEEEESSSTTTCS
T ss_pred             CCCcHH------HHHHHHHh-CCCEEEECChhhhCC
Confidence            999443      34555666 799999998543333

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.59  E-value=0.13  Score=47.00  Aligned_cols=39  Identities=21%  Similarity=0.202  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcc-Ch--HHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~--IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ..+.||++-|.|. |.  ||+.+|+.|+ ..|++|+..+++..
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la-~~G~~V~~~~r~~~   68 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAR-EAGAELAFTYQGDA   68 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHH-HTTCEEEEEECSHH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            3689999999998 45  9999999984 78999999998853

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=93.57  E-value=0.094  Score=49.38  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCCh---h--hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ---A--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+|+|+| .|.+|+.+.++|...-..++..+..+.   .  +...+   .+.. ++  +..........+.+++++++|+
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~---~~p~-~~--~~~~~~v~~~~~~~~~~~~~Dv   78 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISD---LHPQ-LK--GIVELPLQPMSDISEFSPGVDV   78 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHH---HCGG-GT--TTCCCBEEEESSGGGTCTTCSE
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHH---hCcc-cc--CccceeEeccCCHHHHhcCCCE
Confidence            5899999 699999999997533456766553322   1  11110   0000 00  1001111110044555589999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      |++|+|... ++.+ -..   ..+.|+.+|+.|.--
T Consensus        79 vf~a~p~~~-s~~~-~~~---~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           79 VFLATAHEV-SHDL-APQ---FLEAGCVVFDLSGAF  109 (337)
T ss_dssp             EEECSCHHH-HHHH-HHH---HHHTTCEEEECSSTT
T ss_pred             EEECCChHH-HHHH-HHH---HHHCCCEEEEcCCcc
Confidence            999999322 1211 111   246799999987543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.55  E-value=0.14  Score=48.85  Aligned_cols=100  Identities=20%  Similarity=0.125  Sum_probs=60.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-H---hh--c
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-V---LR--E  236 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-l---l~--~  236 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++..+..  +..+++       ..........++.+ +   ..  .
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlA-k~~Ga~~Vi~~~~~~~~~~--~a~~lG-------a~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPARLA--HAKAQG-------FEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHH--HHHHTT-------CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCeEEEEcCCHHHHH--HHHHcC-------CcEEccCCcchHHHHHHHHhCCCC
Confidence            478999999999999999985 89999 7999998765432  122222       11010111112322 2   21  4


Q ss_pred             CCEEEEcCCCCccc-----cc-----ccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTT-----YH-----LINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t-----~~-----li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+-++......     .+     -.-...++.++++..++.++-
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            79999988743210     00     012456778888888887763

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.47  E-value=0.15  Score=45.55  Aligned_cols=70  Identities=13%  Similarity=0.104  Sum_probs=46.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .++|.|.|.|.||+.+++.| ..-|.+|++.+|+...... ...        .+..... ....+++  +..+|+|+.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~-~~~--------~~~~~~~-~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRAL-APQGWRIIGTSRNPDQMEA-IRA--------SGAEPLL-WPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHH-GGGTCEEEEEESCGGGHHH-HHH--------TTEEEEE-SSSSCCC--CTTCCEEEECC
T ss_pred             cCcEEEECCcHHHHHHHHHH-HHCCCEEEEEEcChhhhhh-Hhh--------CCCeEEE-ecccccc--cCCCCEEEECC
Confidence            47899999999999999998 5679999999998754211 100        0100000 0122344  78899998887


Q ss_pred             CCC
Q 019328          245 VLD  247 (342)
Q Consensus       245 plt  247 (342)
                      ...
T Consensus        72 ~~~   74 (286)
T 3ius_A           72 APD   74 (286)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            644

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.43  E-value=0.071  Score=50.10  Aligned_cols=95  Identities=13%  Similarity=0.091  Sum_probs=57.6

Q ss_pred             cCCCEEEEEccChHHHHH-HHHHH-hcCCcE-EEEEcCChh---hHHHHHHhhhhhhhccCCCCCccccccCCHHHHh--
Q 019328          163 LKGQTVGVIGAGRIGSAY-ARMMV-EGFKMN-LIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--  234 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~v-A~~l~-~a~g~~-V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--  234 (342)
                      ..+.+|.|+|.|.+|... ++. + +.+|++ |++.+++.+   +..  +..+++.       ... .....++.++.  
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iql-a~k~~Ga~~Vi~~~~~~~~~~~~~--~~~~lGa-------~~v-~~~~~~~~~i~~~  239 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAML-KVDDKGYENLYCLGRRDRPDPTID--IIEELDA-------TYV-DSRQTPVEDVPDV  239 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHH-HHCTTCCCEEEEEECCCSSCHHHH--HHHHTTC-------EEE-ETTTSCGGGHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHHHcCCcEEEEEeCCcccHHHHH--HHHHcCC-------ccc-CCCccCHHHHHHh
Confidence            345899999999999999 987 6 789997 999998765   321  1222221       000 01112333311  


Q ss_pred             h-cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          235 R-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~-~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      . ..|+|+-++... .+    -...++.++++..++.++-
T Consensus       240 ~gg~Dvvid~~g~~-~~----~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          240 YEQMDFIYEATGFP-KH----AIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             SCCEEEEEECSCCH-HH----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCCh-HH----HHHHHHHHhcCCEEEEEeC
Confidence            1 468888777632 11    1345677778777777753

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=93.42  E-value=0.2  Score=48.95  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=31.6

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEE-EEcC
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDL  197 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~  197 (342)
                      |.++.|+||.|-|+|++|+..|+.| ...|++|+ +.|.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L-~e~GakvVavsD~  271 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKL-IEKGAIVLTMSDS  271 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHH-HHHTCCBCCEECS
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECC
Confidence            3479999999999999999999997 67899986 4553

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=93.42  E-value=0.15  Score=47.63  Aligned_cols=103  Identities=23%  Similarity=0.283  Sum_probs=60.4

Q ss_pred             CCEEEEEc-cChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccc---cCCHHHHhhcCC
Q 019328          165 GQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREAD  238 (342)
Q Consensus       165 gktvGIiG-~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~sD  238 (342)
                      ..+|+|+| .|.+|..++..|+ ..|  .+|..+|....... .  ...    .... .......   ..++.+.++.||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~-~~g~~~ev~l~Di~~~~~~-~--~dL----~~~~-~~~~v~~~~~t~d~~~al~gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMK-MNPLVSVLHLYDVVNAPGV-T--ADI----SHMD-TGAVVRGFLGQQQLEAALTGMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHH-HCTTEEEEEEEESSSHHHH-H--HHH----HTSC-SSCEEEEEESHHHHHHHHTTCS
T ss_pred             CCEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEeCCCcHhH-H--HHh----hccc-ccceEEEEeCCCCHHHHcCCCC
Confidence            35899999 8999999999874 456  68999997654111 0  001    1101 1101111   235678899999


Q ss_pred             EEEEcCCCCcccccc-------cC----H---hHHccCCCCcEEEecCCCccCCH
Q 019328          239 VISLHPVLDKTTYHL-------IN----K---ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       239 iV~l~lplt~~t~~l-------i~----~---~~l~~mk~gailIN~sRG~~vd~  279 (342)
                      +|+++.+... ..+.       .|    .   +.+....|.+++++.+  .++|.
T Consensus        79 vVi~~ag~~~-~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           79 LIIVPAGVPR-KPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             EEEECCCCCC-CSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             EEEEcCCcCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            9999976332 1111       11    1   1222335788999875  44555

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=93.39  E-value=0.2  Score=43.05  Aligned_cols=70  Identities=14%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             EEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccc-cCCHHHHhhcCCEEEE
Q 019328          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKR-ASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~ell~~sDiV~l  242 (342)
                      +|.|.| .|.||+.+++.| ..-|.+|++.+|+.......           .+....  .... ..++.++++++|+|+.
T Consensus         2 ~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~-----------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQY-----------NNVKAVHFDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCCC-----------TTEEEEECCTTSCHHHHHTTTTTCSEEEE
T ss_pred             eEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhhc-----------CCceEEEecccCCHHHHHHHHcCCCEEEE
Confidence            688999 799999999998 57799999999987542100           000000  0111 2346677889999999


Q ss_pred             cCCCCc
Q 019328          243 HPVLDK  248 (342)
Q Consensus       243 ~lplt~  248 (342)
                      +.....
T Consensus        70 ~ag~~~   75 (219)
T 3dqp_A           70 VSGSGG   75 (219)
T ss_dssp             CCCCTT
T ss_pred             CCcCCC
Confidence            887554

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.24  E-value=0.23  Score=46.29  Aligned_cols=92  Identities=12%  Similarity=0.059  Sum_probs=59.9

Q ss_pred             CEEEEE-ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------hcCC
Q 019328          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------READ  238 (342)
Q Consensus       166 ktvGIi-G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~sD  238 (342)
                      +++.|. |.|.||...++.+ +.+|++|++.+++.++...  ..+++.       .........++.+.+      ...|
T Consensus       166 ~~vli~gg~g~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~--~~~~Ga-------~~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQIAL--LKDIGA-------AHVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESCGGGHHH--HHHHTC-------SEEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCC-------CEEEECCcHHHHHHHHHHhcCCCCc
Confidence            567665 8999999999985 7899999999987654321  122221       101011112333322      2699


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +|+-++.. +.    + ...++.++++..++.++.
T Consensus       236 ~vid~~g~-~~----~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVTG-PL----A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSCH-HH----H-HHHHHHSCTTCEEEECCC
T ss_pred             EEEECCCC-hh----H-HHHHhhhcCCCEEEEEec
Confidence            99998762 21    1 567889999999999973

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.14  E-value=0.13  Score=47.63  Aligned_cols=94  Identities=12%  Similarity=0.085  Sum_probs=58.5

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHH----HHh--hc
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVL--RE  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell--~~  236 (342)
                      .|+++.|.|. |.||+.+++.+ +..|++|++.+++......  ...++.       .........++.    +..  ..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~Vi~~~~~~~~~~~--~~~~g~-------~~~~d~~~~~~~~~i~~~~~~~~  214 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWA-RHLGATVIGTVSTEEKAET--ARKLGC-------HHTINYSTQDFAEVVREITGGKG  214 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESSHHHHHH--HHHHTC-------SEEEETTTSCHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCC-------CEEEECCCHHHHHHHHHHhCCCC
Confidence            4789999995 99999999986 7899999999998643211  111211       000000111222    222  14


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+++.+...  +    .-...++.++++..++.++.
T Consensus       215 ~d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          215 VDVVYDSIGK--D----TLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             EEEEEECSCT--T----THHHHHHTEEEEEEEEECCC
T ss_pred             CeEEEECCcH--H----HHHHHHHhhccCCEEEEEec
Confidence            6888887763  1    23566778888888888763

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.10  E-value=0.2  Score=48.97  Aligned_cols=108  Identities=12%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             CCEEEEEccChHHHHHHHHHHh---------cCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~---------a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (342)
                      -.+|||+|+|.||+.+++.+.+         +.+.+|. ++|++.... ..+..              ....+.++++++
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~-~~~~~--------------~~~~~~d~~ell   74 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA-EALAG--------------GLPLTTNPFDVV   74 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH-HHHHT--------------TCCEESCTHHHH
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh-hhhcc--------------cCcccCCHHHHh
Confidence            3589999999999999876531         2567765 557765432 11100              112356899999


Q ss_pred             h--cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCCc
Q 019328          235 R--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (342)
Q Consensus       235 ~--~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~i  291 (342)
                      +  +.|+|+.++|.+...+.+    ..+.++.|.-++..--+... +-+.|.++.++...
T Consensus        75 ~d~diDvVve~tp~~~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv  130 (444)
T 3mtj_A           75 DDPEIDIVVELIGGLEPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGV  130 (444)
T ss_dssp             TCTTCCEEEECCCSSTTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCEEEEcCCCchHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCC
Confidence            6  579999999953222221    23445566555543222222 23567777666543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.06  E-value=0.098  Score=50.80  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCcccc-ccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDiV  240 (342)
                      ++.||+|.|||+|..|.+.|+.| ...|.+|.++|.+......       .+++ .+.   ... .... .+.+..+|.|
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~~-------~~l~-~G~---~~~~g~~~-~~~~~~~d~v   68 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGL-------DKLP-EAV---ERHTGSLN-DEWLMAADLI   68 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHH-HTTTCCCEEEESSSSCTTG-------GGSC-TTS---CEEESSCC-HHHHHTCSEE
T ss_pred             CCCCCEEEEEeecHHHHHHHHHH-HhCCCEEEEEECCCCcchh-------HHhh-CCC---EEEECCCc-HHHhccCCEE
Confidence            36789999999999999999887 6889999999986543110       0121 121   111 1112 4556689999


Q ss_pred             EEcCCC---Ccccc-------cccCHh--HHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          241 SLHPVL---DKTTY-------HLINKE--RLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~lpl---t~~t~-------~li~~~--~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      ++.-..   +|...       .++.+-  ....++...+-|-=+.|..--..-|...|++.
T Consensus        69 V~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           69 VASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             EECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             EeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            887322   22211       233331  12235545555655677776566666667653

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=93.04  E-value=0.34  Score=43.40  Aligned_cols=31  Identities=32%  Similarity=0.592  Sum_probs=23.8

Q ss_pred             EEEEEcc-ChHHHHHHHHHHhcCCcEEEE-EcC
Q 019328          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDL  197 (342)
Q Consensus       167 tvGIiG~-G~IG~~vA~~l~~a~g~~V~~-~d~  197 (342)
                      +|+|+|. |.||+.+++.+...-++++.+ +|+
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            7999995 999999999863334888764 443

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=93.02  E-value=0.29  Score=45.06  Aligned_cols=105  Identities=13%  Similarity=0.162  Sum_probs=57.7

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|.||+.+|-.|+ +++--++..||.......-.-.| .......-.. ........+. +.++.||+|++..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~D-L~h~~~~~~~-~~~i~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGIDK-YPKIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH-HHHHHGGGTC-CCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhh-hhcccccCCC-CCeEecCCCH-HHhCCCCEEEEec
Confidence            47999999999999998763 34445899999986432111111 1000000000 0011112233 4679999999984


Q ss_pred             --CCCc-ccccc-c--CH-------hHHccCCCCcEEEecCC
Q 019328          245 --VLDK-TTYHL-I--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 --plt~-~t~~l-i--~~-------~~l~~mk~gailIN~sR  273 (342)
                        |..| .||.- +  |.       +.+..-.|+++++.++.
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence              5444 23321 2  22       23444567888887754

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=93.02  E-value=0.23  Score=45.72  Aligned_cols=124  Identities=15%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             CEEEEEc-cChHHHHHHHHHHh-cCCcEEEEEcC--ChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~-a~g~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+|+|+| .|.+|..++..|+. +...++..+|+  .... .+...........  ......... .+ .+.++.||+|+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~-~~~~~~dl~~~~~--~~~~~~v~~-~~-~~a~~~aDvVi   75 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD-TVGQAADTNHGIA--YDSNTRVRQ-GG-YEDTAGSDVVV   75 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH-HHHHHHHHHHHHT--TTCCCEEEE-CC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh-HHHHHHHHHHHHh--hCCCcEEEe-CC-HHHhCCCCEEE
Confidence            3799999 99999999998743 22237888998  5432 1111111110000  001111111 23 56789999999


Q ss_pred             EcCCCCcccccc-----c--C----H---hHHccCCCCcEEEecCCCccCCHHHHHHH--HHcCCccEEE
Q 019328          242 LHPVLDKTTYHL-----I--N----K---ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG  295 (342)
Q Consensus       242 l~lplt~~t~~l-----i--~----~---~~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~gaa  295 (342)
                      ++..... ..++     +  |    .   +.+....|.+++++++---=+....+.+.  +...++.|.|
T Consensus        76 ~~ag~~~-~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~g  144 (303)
T 1o6z_A           76 ITAGIPR-QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGFG  144 (303)
T ss_dssp             ECCCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEECC
T ss_pred             EcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeecc
Confidence            9975332 1111     0  1    1   23344578899999744322223333333  3334666663

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=93.00  E-value=0.13  Score=46.63  Aligned_cols=39  Identities=23%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             ccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       160 g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      ..++.||++-|.|- |.||+.+|+.|+ ..|++|+..+|+.
T Consensus        18 ~~~l~~k~~lVTGas~gIG~aia~~L~-~~G~~V~~~~r~~   57 (288)
T 2x9g_A           18 GSHMEAPAAVVTGAAKRIGRAIAVKLH-QTGYRVVIHYHNS   57 (288)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHH-HHTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCeEEEEeCCc
Confidence            35689999999986 899999999985 6799999999886

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.98  E-value=0.12  Score=48.47  Aligned_cols=94  Identities=11%  Similarity=-0.032  Sum_probs=60.7

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-Hh-----hc
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VL-----RE  236 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll-----~~  236 (342)
                      .|++|.|.| .|.||..+++.+ +..|++|++.+++.++...  ...++.       .........++.+ +.     ..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~  231 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKKLQM--AEKLGA-------AAGFNYKKEDFSEATLKFTKGAG  231 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHH--HHHHTC-------SEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--HHHcCC-------cEEEecCChHHHHHHHHHhcCCC
Confidence            488999999 799999999986 7899999999988654321  122211       0000001122222 22     14


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+++.+... +     .-...++.|+++..++.++.
T Consensus       232 ~d~vi~~~G~-~-----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          232 VNLILDCIGG-S-----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             EEEEEESSCG-G-----GHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEECCCc-h-----HHHHHHHhccCCCEEEEEec
Confidence            7999888763 1     12456788999999999874

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=92.97  E-value=0.11  Score=48.65  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhc-----C--CcEEE-EEcCChhhHHH-----HHHhhhhhhhccCCCCCccccccC---C
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG-----F--KMNLI-YYDLYQATRLE-----KFVTAYGQFLKANGEQPVTWKRAS---S  229 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a-----~--g~~V~-~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~  229 (342)
                      .+|||||+|.||+.+++.+.+.     .  +++|. ++|++.....+     .+.+.+.    . .  ... ....   +
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~----~-~--~~~-~~~~~~~d   78 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKE----K-G--SLD-SLEYESIS   78 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHH----T-T--CGG-GCCSEECC
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhc----c-C--Ccc-cccCCCCC
Confidence            4799999999999999886421     1  36664 56776532110     0100000    0 0  000 0123   7


Q ss_pred             HHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccC-CHHHHHHHHHcCC
Q 019328          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP  290 (342)
Q Consensus       230 l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~v-d~~aL~~aL~~g~  290 (342)
                      +++++ ...|+|+.|+|.. .|-+.--+-..+.++.|.-+|...-..+. +-+.|.++.++..
T Consensus        79 ~~~ll~~~iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~g  140 (331)
T 3c8m_A           79 ASEALARDFDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNN  140 (331)
T ss_dssp             HHHHHHSSCSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcC
Confidence            88887 3589999999964 22111112344556667666654333332 3356666655543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=92.96  E-value=0.19  Score=49.66  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             CCCEEEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..|+|-|||+|.+|.+ +|+.| +..|++|.++|....+..+.+        +..+.   ....-.+. +.+..+|+|++
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l-~~~G~~V~~~D~~~~~~~~~l--------~~~gi---~~~~g~~~-~~~~~~d~vV~   87 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVL-ANEGYQISGSDLAPNSVTQHL--------TALGA---QIYFHHRP-ENVLDASVVVV   87 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHH-HHTTCEEEEECSSCCHHHHHH--------HHTTC---EEESSCCG-GGGTTCSEEEE
T ss_pred             cCCEEEEEEEcHhhHHHHHHHH-HhCCCeEEEEECCCCHHHHHH--------HHCCC---EEECCCCH-HHcCCCCEEEE
Confidence            3589999999999996 89987 689999999998755432221        11111   11111122 34567999988


Q ss_pred             c--CCC-Cccc-----c--cccCH-hHHcc-CCCC-cEEEecCCCccCCHHHHHHHHHcCC
Q 019328          243 H--PVL-DKTT-----Y--HLINK-ERLAT-MKKE-AILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       243 ~--lpl-t~~t-----~--~li~~-~~l~~-mk~g-ailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      .  +|. +|+.     +  .++++ +.|.. ++.. .+-|-=+.|..--..-+...|+...
T Consensus        88 Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  148 (494)
T 4hv4_A           88 STAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG  148 (494)
T ss_dssp             CTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence            7  443 2221     1  13333 33333 3432 3555556888877778888888654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.88  E-value=0.14  Score=48.02  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=59.0

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cCC
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~sD  238 (342)
                      ++|.|.|. |.||+.+++.+ +..|+ +|++.+++...... ....++       ..........++.+.+.     ..|
T Consensus       162 ~~vlI~GasggiG~~~~~~a-~~~Ga~~Vi~~~~~~~~~~~-~~~~~g-------~~~~~d~~~~~~~~~~~~~~~~~~d  232 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIG-HFLGCSRVVGICGTHEKCIL-LTSELG-------FDAAINYKKDNVAEQLRESCPAGVD  232 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHH-HHTTCSEEEEEESCHHHHHH-HHHTSC-------CSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             cEEEEECCCcHHHHHHHHHH-HHCCCCeEEEEeCCHHHHHH-HHHHcC-------CceEEecCchHHHHHHHHhcCCCCC
Confidence            89999998 99999999986 78999 99999987643211 111111       10000011123333322     478


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +++.+...  +    .-...++.++++..++.++.
T Consensus       233 ~vi~~~G~--~----~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          233 VYFDNVGG--N----ISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             EEEESCCH--H----HHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCCH--H----HHHHHHHHhccCcEEEEECC
Confidence            88888761  1    23567788888888888764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.87  E-value=0.13  Score=48.99  Aligned_cols=99  Identities=15%  Similarity=0.055  Sum_probs=60.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HH-H---hh--
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DE-V---LR--  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e-l---l~--  235 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.++..  +..+++       .. .......++ .+ +   ..  
T Consensus       185 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~a~~lG-------a~-~i~~~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGA-RLLGAACVIVGDQNPERLK--LLSDAG-------FE-TIDLRNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEEESCHHHHH--HHHTTT-------CE-EEETTSSSCHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--HHHHcC-------Cc-EEcCCCcchHHHHHHHHhCCC
Confidence            588999999999999999985 78999 9999998865431  122222       10 000111222 22 2   21  


Q ss_pred             cCCEEEEcCCCCcc-----ccc----ccCHhHHccCCCCcEEEecCC
Q 019328          236 EADVISLHPVLDKT-----TYH----LINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~sDiV~l~lplt~~-----t~~----li~~~~l~~mk~gailIN~sR  273 (342)
                      ..|+|+-++.....     ..+    -.-...++.++++..++.++-
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            47999999874320     000    012456777888888887764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.85  E-value=0.19  Score=45.37  Aligned_cols=73  Identities=18%  Similarity=0.143  Sum_probs=47.2

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV  240 (342)
                      .++|.|.|. |.||+.+++.|. .-| .+|.+.+|++.........       ..+....  ......++.++++.+|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~-~~g~~~V~~~~R~~~~~~~~~l~-------~~~~~~~~~D~~d~~~l~~~~~~~d~v   76 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLL-EDGTFKVRVVTRNPRKKAAKELR-------LQGAEVVQGDQDDQVIMELALNGAYAT   76 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HHCSSEEEEEESCTTSHHHHHHH-------HTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHH-hcCCceEEEEEcCCCCHHHHHHH-------HCCCEEEEecCCCHHHHHHHHhcCCEE
Confidence            578999998 999999999984 557 8999999886532111000       0010000  011123567788999999


Q ss_pred             EEcCC
Q 019328          241 SLHPV  245 (342)
Q Consensus       241 ~l~lp  245 (342)
                      +.+.+
T Consensus        77 i~~a~   81 (299)
T 2wm3_A           77 FIVTN   81 (299)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            98865

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.84  E-value=0.086  Score=48.67  Aligned_cols=73  Identities=11%  Similarity=0.082  Sum_probs=46.0

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ..+.+|+|.|.|. |.||+.+++.| ..-|.+|++.+|.....  .    +.  .     .........+++++++.+|+
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~~--~----~~--~-----~~~Dl~d~~~~~~~~~~~d~   80 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAAL-RTQGRTVRGFDLRPSGT--G----GE--E-----VVGSLEDGQALSDAIMGVSA   80 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHH-HHTTCCEEEEESSCCSS--C----CS--E-----EESCTTCHHHHHHHHTTCSE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHH-HhCCCEEEEEeCCCCCC--C----cc--E-----EecCcCCHHHHHHHHhCCCE
Confidence            5789999999998 99999999998 47799999999875420  0    00  0     00001112356778899999


Q ss_pred             EEEcCCCC
Q 019328          240 ISLHPVLD  247 (342)
Q Consensus       240 V~l~lplt  247 (342)
                      |+.+....
T Consensus        81 vih~A~~~   88 (347)
T 4id9_A           81 VLHLGAFM   88 (347)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccc
Confidence            98876543

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=92.79  E-value=0.083  Score=49.61  Aligned_cols=104  Identities=15%  Similarity=0.161  Sum_probs=60.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHH-HHHHhhhhhhhccCCCCCc--c-ccccCCHHHHhhcCC
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVTAYGQFLKANGEQPV--T-WKRASSMDEVLREAD  238 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~ell~~sD  238 (342)
                      .+++|.|.|. |.||+.+++.|+ .-|.+|++.+|+..... .....       ..+....  . .....++.++++.+|
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~l~~-------~~~v~~v~~D~l~d~~~l~~~~~~~d   75 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAA-AVGHHVRAQVHSLKGLIAEELQA-------IPNVTLFQGPLLNNVPLMDTLFEGAH   75 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCSCSHHHHHHHT-------STTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-hCCCEEEEEECCCChhhHHHHhh-------cCCcEEEECCccCCHHHHHHHHhcCC
Confidence            3678999995 999999999984 57899999988764321 11100       0000000  0 011234677889999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCC-C--cEEEecCCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKK-E--AILVNCSRGP  275 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~-g--ailIN~sRG~  275 (342)
                      +|+.+...............++.++. |  ..||++|...
T Consensus        76 ~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           76 LAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            99977653311112223444444432 3  4788887653

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.70  E-value=0.24  Score=46.10  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             CCCEEEEEccC-hHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC----HHHHh--h
Q 019328          164 KGQTVGVIGAG-RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVL--R  235 (342)
Q Consensus       164 ~gktvGIiG~G-~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell--~  235 (342)
                      .|++|.|+|.| .||..+++.+ +.. |++|++.+++......  ...++.       .........+    +.++.  .
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a-~~~~Ga~Vi~~~~~~~~~~~--~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~  239 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVEA--AKRAGA-------DYVINASMQDPLAEIRRITESK  239 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHHH--HHHHTC-------SEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCccHHHHHHHHH-HHcCCCeEEEEcCCHHHHHH--HHHhCC-------CEEecCCCccHHHHHHHHhcCC
Confidence            47899999999 9999999986 677 9999999988654321  122221       0000001112    23333  2


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      ..|+|+.+..... +    -...++.++++..++.++..
T Consensus       240 ~~d~vi~~~g~~~-~----~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          240 GVDAVIDLNNSEK-T----LSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             CEEEEEESCCCHH-H----HTTGGGGEEEEEEEEECCSS
T ss_pred             CceEEEECCCCHH-H----HHHHHHHHhcCCEEEEECCC
Confidence            5799988876321 1    13456778899999988753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.66  E-value=0.11  Score=48.30  Aligned_cols=93  Identities=15%  Similarity=0.164  Sum_probs=58.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH----Hhh--c
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--E  236 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--~  236 (342)
                      .|.+|.|+|.|.+|...++.+ +.+ |.+|++.+++.++..  +..+++       .... .....++.+    +..  .
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla-~~~g~~~Vi~~~~~~~~~~--~~~~lG-------a~~~-i~~~~~~~~~v~~~t~g~g  239 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQIL-RAVSAARVIAVDLDDDRLA--LAREVG-------ADAA-VKSGAGAADAIRELTGGQG  239 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESCHHHHH--HHHHTT-------CSEE-EECSTTHHHHHHHHHGGGC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--HHHHcC-------CCEE-EcCCCcHHHHHHHHhCCCC
Confidence            488999999999999999985 676 789999998876432  222222       1111 111112222    222  5


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .|+|+-++.... +    -...++.++++..++.++
T Consensus       240 ~d~v~d~~G~~~-~----~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          240 ATAVFDFVGAQS-T----IDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEEEESSCCHH-H----HHHHHHHEEEEEEEEECS
T ss_pred             CeEEEECCCCHH-H----HHHHHHHHhcCCEEEEEC
Confidence            789988877321 1    234667778888888775

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.63  E-value=0.17  Score=47.43  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-H---hh--c
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-V---LR--E  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-l---l~--~  236 (342)
                      .|++|.|.|. |.||..+++.+ +..|++|++.++++....  ....++       ..........++.+ +   ..  .
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~~g-------a~~~~d~~~~~~~~~~~~~~~~~~  239 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQK--IVLQNG-------AHEVFNHREVNYIDKIKKYVGEKG  239 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHH--HHHHTT-------CSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CcCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChhHHH--HHHHcC-------CCEEEeCCCchHHHHHHHHcCCCC
Confidence            4889999998 99999999986 789999999998865432  111221       10000001112222 2   21  4


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+.+...  .+    -...++.++++..++.++.
T Consensus       240 ~D~vi~~~G~--~~----~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          240 IDIIIEMLAN--VN----LSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             EEEEEESCHH--HH----HHHHHHHEEEEEEEEECCC
T ss_pred             cEEEEECCCh--HH----HHHHHHhccCCCEEEEEec
Confidence            7888887652  11    2456778888888888874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.60  E-value=0.18  Score=46.41  Aligned_cols=79  Identities=10%  Similarity=0.116  Sum_probs=50.2

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhh--
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLR--  235 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~--  235 (342)
                      .++.|++|.|.|. |.||+.+++.| ...|.+|++.+|+.....+. ...    +  ......  ......+++++++  
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~-~~~----l--~~v~~~~~Dl~d~~~~~~~~~~~   87 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHW-LPQGHEILVIDNFATGKREV-LPP----V--AGLSVIEGSVTDAGLLERAFDSF   87 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHH-GGGTCEEEEEECCSSSCGGG-SCS----C--TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCccchhh-hhc----c--CCceEEEeeCCCHHHHHHHHhhc
Confidence            5789999999997 99999999998 46799999999864321100 000    0  000000  0011124567777  


Q ss_pred             cCCEEEEcCCCC
Q 019328          236 EADVISLHPVLD  247 (342)
Q Consensus       236 ~sDiV~l~lplt  247 (342)
                      ..|+|+.+....
T Consensus        88 ~~D~vih~A~~~   99 (330)
T 2pzm_A           88 KPTHVVHSAAAY   99 (330)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            899998886543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=92.57  E-value=0.23  Score=44.89  Aligned_cols=77  Identities=19%  Similarity=0.221  Sum_probs=47.2

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh----HHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcC
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT----RLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~s  237 (342)
                      .++|.|.|. |.||+.+++.| ..-|.+|++.+|+...    ........    +...+..-.  ......++.++++.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~~~----l~~~~v~~v~~D~~d~~~l~~~~~~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTASSNSEKAQLLES----FKASGANIVHGSIDDHASLVEAVKNV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCTTTTHHHHHHHHH----HHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HhCCCCEEEEECCcccccCHHHHHHHHH----HHhCCCEEEEeccCCHHHHHHHHcCC
Confidence            478999996 99999999998 4678999999987421    11100000    001111000  011123567788899


Q ss_pred             CEEEEcCCC
Q 019328          238 DVISLHPVL  246 (342)
Q Consensus       238 DiV~l~lpl  246 (342)
                      |+|+.+.+.
T Consensus        79 d~vi~~a~~   87 (308)
T 1qyc_A           79 DVVISTVGS   87 (308)
T ss_dssp             SEEEECCCG
T ss_pred             CEEEECCcc
Confidence            999888763

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.54  E-value=0.37  Score=45.29  Aligned_cols=94  Identities=13%  Similarity=0.169  Sum_probs=60.0

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----c
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (342)
                      .|.+|.|+| .|.+|...++.+ +. .|++|++.+++.++..  +..+++       ... ......++.+.+.     .
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qla-k~~~g~~Vi~~~~~~~~~~--~~~~lG-------ad~-vi~~~~~~~~~v~~~~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIA-RQRTDLTVIATASRPETQE--WVKSLG-------AHH-VIDHSKPLAAEVAALGLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHH-HHHCCSEEEEECSSHHHHH--HHHHTT-------CSE-EECTTSCHHHHHHTTCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHhcCCEEEEEeCCHHHHH--HHHHcC-------CCE-EEeCCCCHHHHHHHhcCCC
Confidence            688999999 999999999985 66 5899999999865432  112222       110 1111123433332     5


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+-++...+     .-...++.++++..++.++.
T Consensus       240 ~Dvvid~~g~~~-----~~~~~~~~l~~~G~iv~~g~  271 (363)
T 4dvj_A          240 PAFVFSTTHTDK-----HAAEIADLIAPQGRFCLIDD  271 (363)
T ss_dssp             EEEEEECSCHHH-----HHHHHHHHSCTTCEEEECSC
T ss_pred             ceEEEECCCchh-----hHHHHHHHhcCCCEEEEECC
Confidence            788888766211     12456778899988888753

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.52  E-value=0.29  Score=44.19  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ..+.||++-|.|- |.||+.+|+.|+ ..|++|+..+++..
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~   64 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALA-ASGFDIAITGIGDA   64 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCCH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHH-HCCCeEEEEeCCCH
Confidence            4688999999997 789999999984 78999999986443

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.49  E-value=0.15  Score=45.76  Aligned_cols=39  Identities=23%  Similarity=0.095  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ..+.||++-|.|- |.||+.+|+.|+ ..|++|+..+++..
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la-~~G~~V~~~~~~~~   63 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELA-AAGAKVAVNYASSA   63 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCCh
Confidence            4789999999997 789999999984 78999998887543

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=92.45  E-value=0.18  Score=47.83  Aligned_cols=32  Identities=34%  Similarity=0.513  Sum_probs=23.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhc-C--CcEEE-EEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEG-F--KMNLI-YYDL  197 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a-~--g~~V~-~~d~  197 (342)
                      .+|||||+|.||+.+++.+.+. +  +++|. ++|+
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~   40 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA   40 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            3799999999999999987432 2  35665 4454

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=92.44  E-value=0.38  Score=43.35  Aligned_cols=76  Identities=11%  Similarity=0.106  Sum_probs=46.9

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh-h-----hHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhh
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ-A-----TRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLR  235 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~-~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~  235 (342)
                      +++|.|.|. |.||+.+++.|+ .-|.+|.+.+|+. .     ...... ..    +...+..-.  ......++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~~~-~~----l~~~~v~~v~~D~~d~~~l~~~~~   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASI-KAGNPTYALVRKTITAANPETKEELI-DN----YQSLGVILLEGDINDHETLVKAIK   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HHTCCEEEEECCSCCSSCHHHHHHHH-HH----HHHTTCEEEECCTTCHHHHHHHHT
T ss_pred             CcEEEEECCCchHHHHHHHHHH-hCCCcEEEEECCCcccCChHHHHHHH-HH----HHhCCCEEEEeCCCCHHHHHHHHh
Confidence            578999996 999999999984 5688999998875 1     111110 00    000111000  0111235677888


Q ss_pred             cCCEEEEcCCC
Q 019328          236 EADVISLHPVL  246 (342)
Q Consensus       236 ~sDiV~l~lpl  246 (342)
                      .+|+|+.+.+.
T Consensus        76 ~~d~vi~~a~~   86 (307)
T 2gas_A           76 QVDIVICAAGR   86 (307)
T ss_dssp             TCSEEEECSSS
T ss_pred             CCCEEEECCcc
Confidence            99999888764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.40  E-value=0.11  Score=46.40  Aligned_cols=40  Identities=35%  Similarity=0.383  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEcc-C-hHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGA-G-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~-G-~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ..+.||++-|.|- | .||+.+|+.|+ ..|++|+..+|+...
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~~r~~~~   59 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRAL-LEGADVVISDYHERR   59 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEecCCHHH
Confidence            3689999999998 8 59999999984 779999999998754

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=92.31  E-value=0.08  Score=47.63  Aligned_cols=71  Identities=11%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             EEEEEc-cChHHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEEEE
Q 019328          167 TVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvGIiG-~G~IG~~vA~~l~~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV~l  242 (342)
                      +|.|.| .|.||+.+++.|+ .- |.+|.+.+|++.+...         +...+..-.  ......+++++++.+|+|+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~~~g~~V~~~~R~~~~~~~---------~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~   71 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAI-ANHIDHFHIGVRNVEKVPD---------DWRGKVSVRQLDYFNQESMVEAFKGMDTVVF   71 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHH-HTTCTTEEEEESSGGGSCG---------GGBTTBEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             EEEEEcCCchHHHHHHHHHh-hCCCCcEEEEECCHHHHHH---------hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEE
Confidence            688999 5999999999974 55 8999999988654210         000010000  01112356778999999998


Q ss_pred             cCCCC
Q 019328          243 HPVLD  247 (342)
Q Consensus       243 ~lplt  247 (342)
                      +....
T Consensus        72 ~a~~~   76 (289)
T 3e48_A           72 IPSII   76 (289)
T ss_dssp             CCCCC
T ss_pred             eCCCC
Confidence            87643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.28  E-value=0.14  Score=50.17  Aligned_cols=75  Identities=15%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH-hhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sDiV~l~  243 (342)
                      ..+|-|+|+|.+|+.+|+.| ...|.+|.+.|.+++.. +...+.++...    ..+. ......|+++ +++||.++.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L-~~~~~~v~vId~d~~~~-~~~~~~~~~~~----i~Gd-~~~~~~L~~Agi~~ad~~ia~   75 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENL-VGENNDITIVDKDGDRL-RELQDKYDLRV----VNGH-ASHPDVLHEAGAQDADMLVAV   75 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHT-CSTTEEEEEEESCHHHH-HHHHHHSSCEE----EESC-TTCHHHHHHHTTTTCSEEEEC
T ss_pred             cCEEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHHHhcCcEE----EEEc-CCCHHHHHhcCCCcCCEEEEE
Confidence            45799999999999999997 68899999999987542 22212221000    0000 0011123333 6889999887


Q ss_pred             CCC
Q 019328          244 PVL  246 (342)
Q Consensus       244 lpl  246 (342)
                      .+.
T Consensus        76 t~~   78 (461)
T 4g65_A           76 TNT   78 (461)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            773

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.27  E-value=0.14  Score=45.00  Aligned_cols=36  Identities=28%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      ++.||++-|.|- |.||+.+++.|+ .-|++|++.+|+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~-~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFA-RAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEECCC
Confidence            578999999986 999999999984 679999999987

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=92.21  E-value=0.25  Score=49.19  Aligned_cols=117  Identities=12%  Similarity=0.098  Sum_probs=68.3

Q ss_pred             cCCCEEEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ..+++|-|||.|.+|.+ +|+.| +..|++|.++|....+...+.       ++..+.   ....-.+.+.+...+|+|+
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l-~~~G~~V~~sD~~~~~~~~~~-------L~~~gi---~~~~G~~~~~~~~~~d~vV   85 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLA-RALGHTVTGSDANIYPPMSTQ-------LEQAGV---TIEEGYLIAHLQPAPDLVV   85 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCCCTTHHHH-------HHHTTC---EEEESCCGGGGCSCCSEEE
T ss_pred             ecCCEEEEEEecHhhHHHHHHHH-HhCCCEEEEECCCCCcHHHHH-------HHHCCC---EEECCCCHHHcCCCCCEEE
Confidence            45789999999999997 68876 789999999998643211111       111111   1111123445556799998


Q ss_pred             Ec--CCC-Ccccc-------cccCH-hHHcc--CCC-CcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          242 LH--PVL-DKTTY-------HLINK-ERLAT--MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       242 l~--lpl-t~~t~-------~li~~-~~l~~--mk~-gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      ..  +|. +|+..       .++.+ +.+..  +++ ..+-|-=+.|..--..-+...|+...
T Consensus        86 ~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G  148 (524)
T 3hn7_A           86 VGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG  148 (524)
T ss_dssp             ECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             ECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            86  442 22221       23433 33343  333 34555556788777777777787643

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=92.18  E-value=0.24  Score=45.92  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.+|.|+|.|.+|...++.+++..|.+|++.++++++
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r  200 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDK  200 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHH
Confidence            47899999999999999998644678999999998764

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=92.15  E-value=0.28  Score=47.41  Aligned_cols=106  Identities=18%  Similarity=0.250  Sum_probs=66.6

Q ss_pred             cCCCEEEEEc-----cCh---HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh
Q 019328          163 LKGQTVGVIG-----AGR---IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       163 l~gktvGIiG-----~G~---IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (342)
                      +.|++|+|+|     +|.   +.++.+..+ ..||++|.+..|..-...+...+......+..+   .......++++.+
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l-~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G---~~v~~~~d~~eav  261 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLM-TRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFG---GNFTKTNSMAEAF  261 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHS---SEEEEESCHHHHH
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CEEEEEcCHHHHh
Confidence            8899999998     464   999999987 689999999988621100111110000000011   1123457899999


Q ss_pred             hcCCEEEEcCCCC----------------c-------------c--cccccCHhHHccCCC-CcEEEecC
Q 019328          235 READVISLHPVLD----------------K-------------T--TYHLINKERLATMKK-EAILVNCS  272 (342)
Q Consensus       235 ~~sDiV~l~lplt----------------~-------------~--t~~li~~~~l~~mk~-gailIN~s  272 (342)
                      +++|+|..-+-..                +             +  ..--++.+.++.+|+ +++|.-+.
T Consensus       262 ~~ADVVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcL  331 (418)
T 2yfk_A          262 KDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCL  331 (418)
T ss_dssp             TTCSEEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCS
T ss_pred             cCCCEEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCC
Confidence            9999999864211                0             0  112468889999986 78887664

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=92.13  E-value=0.38  Score=44.80  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=59.3

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCc-------EEEEEcCC----hhhHHHHHHhhhhhhhccCC-CCCccccccCCHHH
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLY----QATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDE  232 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~-------~V~~~d~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~e  232 (342)
                      .+|.|+|. |.+|..++..|+ .-|+       +|..+|+.    .+. .+......    .+.. ..........++.+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~-~~~~~~~~~~~ev~l~Di~~~~~~~~-~~g~~~dl----~~~~~~~~~~i~~~~~~~~   79 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIA-NGDMLGKDQPVILQLLEIPNEKAQKA-LQGVMMEI----DDCAFPLLAGMTAHADPMT   79 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHH-TTTTTCTTCCEEEEEECCSCHHHHHH-HHHHHHHH----HTTTCTTEEEEEEESSHHH
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCcCCCCCCEEEEEcCCCcccccc-chhhHHHH----hhhcccccCcEEEecCcHH
Confidence            58999997 999999999874 4554       89999987    321 11111111    1100 00111222367889


Q ss_pred             HhhcCCEEEEcCCCCcc---ccc-c--cC----H---hHHccC-CCCcEEEecCC
Q 019328          233 VLREADVISLHPVLDKT---TYH-L--IN----K---ERLATM-KKEAILVNCSR  273 (342)
Q Consensus       233 ll~~sDiV~l~lplt~~---t~~-l--i~----~---~~l~~m-k~gailIN~sR  273 (342)
                      .++.||+|+.+......   ++. +  .|    .   +.+... +|.++||++|-
T Consensus        80 al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           80 AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            99999999988543221   111 1  11    1   223333 48899999983

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=92.11  E-value=0.11  Score=48.84  Aligned_cols=31  Identities=19%  Similarity=0.337  Sum_probs=23.9

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhc--CCcEEEEEc
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEG--FKMNLIYYD  196 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a--~g~~V~~~d  196 (342)
                      .+|||+| +|.||+.+.+.|...  -..++.++.
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~   37 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLA   37 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence            5899999 999999999987432  246666654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=92.00  E-value=0.51  Score=42.88  Aligned_cols=75  Identities=12%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV~  241 (342)
                      .++|.|.|. |.||+.+++.|. .-|.+|.+.+|+........ ..    +...+..-.  ......++.++++.+|+|+
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~-~~----l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi   84 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSL-KLGHPTYVFTRPNSSKTTLL-DE----FQSLGAIIVKGELDEHEKLVELMKKVDVVI   84 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHH-HTTCCEEEEECTTCSCHHHH-HH----HHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHH-HCCCcEEEEECCCCchhhHH-HH----hhcCCCEEEEecCCCHHHHHHHHcCCCEEE
Confidence            468999995 999999999984 66899999988764111100 00    000111000  0111235677888999998


Q ss_pred             EcCC
Q 019328          242 LHPV  245 (342)
Q Consensus       242 l~lp  245 (342)
                      .+.+
T Consensus        85 ~~a~   88 (318)
T 2r6j_A           85 SALA   88 (318)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	8e-39
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	8e-28
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	8e-27
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	6e-26
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	3e-25
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	3e-15
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	7e-15
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	1e-14
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	2e-14
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	1e-13
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	3e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	2e-11
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	2e-10
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	6e-09
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	4e-08
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	3e-07
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	4e-06
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	9e-05
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	4e-04

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  134 bits (337), Expect = 8e-39
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           +T  TAE+A  L L +ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238
           A A+   +GF M++ Y+D ++A               ++ E         S+D +L  + 
Sbjct: 61  ALAKRA-QGFDMDIDYFDTHRA--------------SSSDEASYQATFHDSLDSLLSVSQ 105

Query: 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
             SL+      T +  NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DV
Sbjct: 106 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 165

Query: 299 FEDEPYMKPGLSEMKNAIVVPHIASA 324
           F  EP +  G  ++ N  + PHI SA
Sbjct: 166 FAGEPNINEGYYDLPNTFLFPHIGSA 191

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  105 bits (261), Expect = 8e-28
 Identities = 67/202 (33%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
             + AE A +L LAA+R+I  AD  +R      W  + F G  + G+TVGV+G GRIG  
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREH---TWKRSSFSGTEIFGKTVGVVGLGRIGQL 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A+ +   F   ++ YD Y +      +                     S+D++L  AD 
Sbjct: 59  VAQRIAA-FGAYVVAYDPYVSPARAAQLGIE----------------LLSLDDLLARADF 101

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           IS+H      T  LI+KE LA  K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 102 ISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161

Query: 300 EDEPYMKPGLSEMKNAIVVPHI 321
             EP     L E+   +V PH+
Sbjct: 162 ATEPCTDSPLFELAQVVVTPHL 183

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  102 bits (255), Expect = 8e-27
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLY----DGWLPNLFVGNLLKGQTVGVIGAGRI 176
           E TA+      L   RR     + +R G      +           ++G+T+G+IG GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236
           G A A          L Y                              +R S++ ++L  
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERAL----------------GLQRVSTLQDLLFH 104

Query: 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           +D ++LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    L
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 297 DVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           DV E EP+      L +  N I  PH A
Sbjct: 165 DVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  100 bits (249), Expect = 6e-26
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 17/202 (8%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           + AE    + L+  R  + + E+ R G ++     +     L+   VG + AGRIG A  
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           R +   F ++L Y D ++                 + E+ +     ++ +++    DV++
Sbjct: 61  RRL-APFDVHLHYTDRHRLPE--------------SVEKELNLTWHATREDMYPVCDVVT 105

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           L+  L   T H+IN E L   K+ A +VN +RG + D  A+   L+   +     DV+  
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 302 EPYMKPG-LSEMKNAIVVPHIA 322
           +P  K      M    + PHI+
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHIS 187

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 98.5 bits (244), Expect = 3e-25
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 27/208 (12%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
           T + AEL     L   R + EA+     G+ +      F                   + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF------------------EAR 43

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
             ++ + G+        +   +          +     G           + ++L  +DV
Sbjct: 44  GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQH----LSDLLNMSDV 99

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +SLH   + +T +++  + ++ MK  ++L+N SRG V+D  AL + L    +    +DVF
Sbjct: 100 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159

Query: 300 EDEPYMKPG-----LSEMKNAIVVPHIA 322
             EP          L+E  N ++ PHI 
Sbjct: 160 PTEPATNSDPFTSPLAEFDNVLLTPHIG 187

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 71.4 bits (173), Expect = 3e-15
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 35/216 (16%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
              AE AA  +    R+    DE +             +G  ++ Q VGV+G G IG  +
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVGTGHIGQVF 58

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
            ++M       + Y                                  S+D++ ++ADVI
Sbjct: 59  MQIMEGFGAKVITYDIFRNPE------------------LEKKGYYVDSLDDLYKQADVI 100

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E
Sbjct: 101 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160

Query: 301 DEPYMKPG--------------LSEMKNAIVVPHIA 322
            E  +                 L    N +V P  A
Sbjct: 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTA 196

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 70.3 bits (170), Expect = 7e-15
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 35/217 (16%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
               AE A + +L   R + +    ++AG Y+     +       GQ    +        
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKEL---GQQTVGVMGTGHIGQ 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A  + +GF   +I YD Y                              S++++ +++DV
Sbjct: 59  VAIKLFKGFGAKVIAYDPYPMKGDHP------------------DFDYVSLEDLFKQSDV 100

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           I LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +
Sbjct: 101 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 160

Query: 300 EDEPYMKPG--------------LSEMKNAIVVPHIA 322
           E E                    L  M N ++ PHIA
Sbjct: 161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLP-EAAMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P   T+   ++A   +   
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLI 115

Query: 135 ARRIVEAD 142
                 AD
Sbjct: 116 DALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 18  VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET 77
               +      +     +    +E  T+       E+ +       DG+    T  +   
Sbjct: 5   AYGARVDEIQYFKQWAKDTGNTLEYHTEFLD----ENTVEWAKG-FDGINSLQTTPYAAG 59

Query: 78  LFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
           +F  +   G K  +   VG +N+D+ A  +YGI + N P         +           
Sbjct: 60  VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119

Query: 138 IVEADEFMRAG 148
           + + +      
Sbjct: 120 LTKGETSTEVT 130

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 66.3 bits (160), Expect = 1e-13
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           +  AE A +L LA  +RI++  E M+ G Y   +        L       +         
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTR 56

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
              ++      +  +                        +   W+  +S++E LREA   
Sbjct: 57  VGKILAALGAQVRGFSRTP--------------------KEGPWRFTNSLEEALREARAA 96

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
                L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F    DV+ 
Sbjct: 97  VCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW 156

Query: 301 DEPYMKPG--LSEMKNAIVVPHIA 322
                        + N +  P +A
Sbjct: 157 GRNDFAKDAEFFSLPNVVATPWVA 180

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 63.6 bits (154), Expect = 3e-13
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 18  ALGDQVEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPK--LKIVAR 70

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P   +   A+  A   +A + R+  A EF+   +  G
Sbjct: 71  AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 130

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
           +    +    VE+      +L+  + +AL     DGV+     D+      AL+  G   
Sbjct: 16  LKEWEDAHKDVEV-EYTDKLLT-PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI 138
            S   VG +N+D+  A + G  + N P     +    A    +  A   
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN 118

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 24  MPGTRWINLLIEQDCRVEICTQKK-------TILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           MP    + LL  +DC VE+   K           S ++I   + ++  G +   T     
Sbjct: 1   MP---LVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTR 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
                      +    +  G++N+D+ +A   GIAV N P     +  + +  +   AAR
Sbjct: 58  EDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVYS-EQASIEMREEAAR 114

Query: 137 RIVEADEFMRAG 148
            I  A       
Sbjct: 115 EIRRAITGRIPD 126

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 6e-09
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 21/142 (14%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
             ++ G+   V G G +G   A+ +  GF   +I  ++     L+  +   G        
Sbjct: 19  DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAM--EGY------- 68

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVID 278
                   ++MDE  +E ++             +I       MK +AI+ N       ID
Sbjct: 69  ------EVTTMDEACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEID 118

Query: 279 EVALVEHLKQNPMFRVGLDVFE 300
              L E+  +    +  +D + 
Sbjct: 119 VKWLNENAVEKVNIKPQVDRYR 140

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIV 139
           K      +G ++VD+ +A    + V       + T    A                R I 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIR 174

Query: 140 EADEFMRAGLY 150
           +    ++ G  
Sbjct: 175 DEYLIVQGGAL 185

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV 100
                 K  L  E +   I D    +   L      T     +     A    A+G N V
Sbjct: 27  TNIEFHKGALDDEQLKESIRD-AHFIG--LRSRTHLTEDVINAAEKLVAIGAFAIGTNQV 83

Query: 101 DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 148
           D++AA K GI V N P   T+   E           +  +    + A 
Sbjct: 84  DLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 31/96 (32%)

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K    +  G +++   +     + V    G        +   + + A R          
Sbjct: 51  LKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR---------- 99

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                                +     G      A+
Sbjct: 100 --------------------NLITYATGGRPRNIAK 115

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L+ +   ++G G +    AR+++E                    +T              
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLE----------------AGARLTVNALTFIPQFTVWA 53

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                + ++    E  + S    +  T    +N+      +   I  N 
Sbjct: 54  NEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 5/145 (3%)

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VGV+G G +G+  A  + E     +  ++   + + E+F+ A      A   +       
Sbjct: 4   VGVVGLGVMGANLALNIAEK-GFKVAVFNRTYS-KSEEFMKANASAPFAGNLKAFETME- 60

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           +    + +    + L      T   +         +K  ILV+       D+    + L+
Sbjct: 61  AFAASLKKPRKALILVQAGAATDSTIEQ--LKKVFEKGDILVDTGNAHFKDQGRRAQQLE 118

Query: 288 QNPMFRVGLDVFEDEPYMKPGLSEM 312
              +  +G+ +   E   + G +  
Sbjct: 119 AAGLRFLGMGISGGEEGARKGPAFF 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.93
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.9
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.88
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.88
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.85
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.82
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.82
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.81
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.7
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.45
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.42
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.36
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.32
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.32
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.2
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.94
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.92
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.91
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.9
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.81
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.8
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.66
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.55
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.52
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.51
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.44
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.43
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.32
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.21
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.14
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.05
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.03
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.01
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.98
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.94
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.93
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.88
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.87
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.87
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.86
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.8
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.8
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.67
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.66
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.64
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.63
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.53
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.48
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.44
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.4
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.38
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.36
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.36
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.32
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.29
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.25
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.25
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.25
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.23
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.21
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.18
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.18
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.17
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.15
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.13
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.08
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.08
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.03
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.02
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.02
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.01
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.0
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.99
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.99
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.94
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.94
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.75
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.72
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.7
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.69
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.67
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.62
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.58
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.57
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.53
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.49
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.47
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.46
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.46
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.44
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.38
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.36
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.29
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.27
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.22
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.22
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.15
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.15
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.06
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.05
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.02
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.79
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.72
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.66
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.62
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.6
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	95.55
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.55
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.51
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.46
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.46
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	95.43
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.38
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.36
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.33
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.26
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.19
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.19
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.17
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.17
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.08
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.82
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	94.67
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.62
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.58
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.39
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.33
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.21
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	94.17
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.15
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.15
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.12
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.06
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.89
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.87
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.81
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.75
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.72
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.61
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.59
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.55
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.51
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.51
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.47
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.41
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.33
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.29
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	93.26
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.24
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	93.08
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.07
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.96
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.93
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.86
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.86
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.81
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.78
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.67
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.65
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.64
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.57
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.47
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.36
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	92.34
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	92.31
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.29
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.26
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.21
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.19
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.11
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.0
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.9
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.65
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.5
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.36
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.36
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.34
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.27
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.24
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	91.21
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.18
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.05
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.03
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	91.0
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	90.96
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	90.96
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.79
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.32
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	90.3
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.28
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.19
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	90.06
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.02
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	89.96
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	89.9
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.88
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.82
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.82
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	89.77
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.77
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.75
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	89.74
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.62
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.59
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.56
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.52
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	89.48
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.48
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.42
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.36
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.34
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	89.3
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	89.27
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.22
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.01
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.89
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	88.4
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.32
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.32
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.28
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	88.27
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.22
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.13
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.83
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.63
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	87.61
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	87.56
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.53
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	87.51
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	87.45
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.38
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.08
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	87.04
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	87.03
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	86.82
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.74
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	86.66
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.53
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	86.49
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.39
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.31
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.31
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.3
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.25
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	85.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.83
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	85.82
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.66
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.33
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	85.28
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.09
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	84.23
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.08
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	83.66
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	82.99
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	82.91
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	82.65
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	82.55
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	82.5
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.43
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.07
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	82.03
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	81.71
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	81.36
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.01

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=6.2e-56  Score=390.30  Aligned_cols=190  Identities=33%  Similarity=0.537  Sum_probs=173.5

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       120 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      +.+||||++++||+++|++.++++.+|+|.|..|.+....|++++|||+||||+|+||+.+|+++ ++|||+|++||++.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHH-Hhhccccccccccc
Confidence            46899999999999999999999999999999998777788999999999999999999999997 89999999999976


Q ss_pred             hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH
Q 019328          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~  279 (342)
                      ........              .......++++++++||+|++|+|+|++|+++||+++|++||+|++|||+|||++|||
T Consensus        81 ~~~~~~~~--------------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1          81 ASSSDEAS--------------YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             CCHHHHHH--------------HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             cccchhhc--------------ccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh
Confidence            53222111              1123357899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCCCC
Q 019328          280 VALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA  324 (342)
Q Consensus       280 ~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia~~  324 (342)
                      +||++||++|+|+||+||||++||++++|||++|||++|||||++
T Consensus       147 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         147 ELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             HHHHHHHHcCCceEEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999999999999999999888899999999999999974

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.2e-55  Score=384.89  Aligned_cols=184  Identities=36%  Similarity=0.509  Sum_probs=167.8

Q ss_pred             CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       119 ~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      |+++||||++++||++.|++..+++.+++|.|..   ..+.+.++.||++||+|+|.||+.+|+++ ++|||+|++|||+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~---~~~~~~~l~~k~vgiiG~G~IG~~va~~~-~~fg~~v~~~d~~   76 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYDPY   76 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc---cccccccccceeeeeccccchhHHHHHHh-hhccceEEeecCC
Confidence            6789999999999999999999999999998752   33567899999999999999999999996 8999999999998


Q ss_pred             hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      ..+.....                ......+++|++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~~~~~----------------~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVd  140 (184)
T d1ygya1          77 VSPARAAQ----------------LGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  140 (184)
T ss_dssp             SCHHHHHH----------------HTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             CChhHHhh----------------cCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhh
Confidence            76532210                01134689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCC
Q 019328          279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (342)
Q Consensus       279 ~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia  322 (342)
                      ++||++||++|+|+|||||||++||++++|||++|||++|||||
T Consensus       141 e~aL~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         141 EAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             hHHHHHHHhcCcEeEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999999999999999999999999889999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=6.4e-54  Score=377.86  Aligned_cols=187  Identities=32%  Similarity=0.483  Sum_probs=166.8

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCC----CcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEc
Q 019328          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP----NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       121 ~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~----~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d  196 (342)
                      ++||||++++||++.|++..+++.+|+|.|..+..    ....|++|+||||||||+|+||+.+|+++ ++|||+|++||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l-~~fg~~v~~~d   79 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYD   79 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeee-eccccceeecc
Confidence            58999999999999999999999999999864321    12357899999999999999999999997 89999999999


Q ss_pred             CChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      |+........               .+.....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++
T Consensus        80 ~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1          80 PYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             TTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             Ccccccchhh---------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceE
Confidence            9865422210               1123457899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCccEEEeecCCCCCCC--CCCccCCCceEEcCCCCC
Q 019328          277 IDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       277 vd~~aL~~aL~~g~i~gaalDV~~~EP~~--~~~L~~~~nvi~TPHia~  323 (342)
                      ||++||+++|++|+++||+||||++||++  ++||+++|||++|||+|+
T Consensus       145 vde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         145 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999999999999999999975  469999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1.6e-53  Score=377.36  Aligned_cols=184  Identities=32%  Similarity=0.456  Sum_probs=164.6

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       120 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      .++||||++++||++.|++..+++.+++|.|..+.  .+.|++|.||||||||+|+||+.+|+++ ++|||+|++|||+.
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~--~~~~~~l~~ktvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   78 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG--TFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYP   78 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHT--CCCCCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCccc--Ccccccccceeeeeeecccccccccccc-cccceeeeccCCcc
Confidence            46899999999999999999999999999985321  2467899999999999999999999997 89999999999986


Q ss_pred             hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH
Q 019328          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~  279 (342)
                      ....                  .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||+
T Consensus        79 ~~~~------------------~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          79 MKGD------------------HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             CSSC------------------CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             chhh------------------hcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhh
Confidence            5310                  0112346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCccEEEeecCCCCCCC----------C----CCccCCCceEEcCCCCCC
Q 019328          280 VALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVPHIASA  324 (342)
Q Consensus       280 ~aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvi~TPHia~~  324 (342)
                      +||++||++|+|+||+||||++||++          +    ++|+++|||++|||+||+
T Consensus       141 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         141 QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99999999999999999999999952          1    368899999999999986

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=9.5e-53  Score=369.45  Aligned_cols=186  Identities=26%  Similarity=0.323  Sum_probs=165.7

Q ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       122 ~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +||||+++++|++.|++..+++.+++|.|..+. ....++++.|+++||+|+|+||+.+|+++ ++|||+|++|||+..+
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~~   79 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD-CVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRLP   79 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCCC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc-cCCcceeccccceeeccccccchhhhhhh-hccCceEEEEeecccc
Confidence            799999999999999999999999999986332 22346799999999999999999999997 8999999999987643


Q ss_pred             HHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHH
Q 019328          202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~a  281 (342)
                      ......              .......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++|
T Consensus        80 ~~~~~~--------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          80 ESVEKE--------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             HHHHHH--------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             cccccc--------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            222110              112345799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCccEEEeecCCCCCCCC-CCccCCCceEEcCCCCC
Q 019328          282 LVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       282 L~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvi~TPHia~  323 (342)
                      |++||++|+++||+||||++||.+. +|||++||+++|||+||
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999999999999999999999874 79999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.3e-52  Score=370.48  Aligned_cols=182  Identities=35%  Similarity=0.554  Sum_probs=164.3

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       121 ~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ++||||++++||+++|++..+++.+++|+|. |.+  ..|++|+||||||||+|+||+.+|+++ ++|||+|++||++.+
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l-~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRN   77 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhH-hhhcccccccCcccc
Confidence            6899999999999999999999999999985 765  468999999999999999999999997 899999999999876


Q ss_pred             hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHH
Q 019328          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~  280 (342)
                      +....                 ......++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++
T Consensus        78 ~~~~~-----------------~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~  140 (197)
T d1j4aa1          78 PELEK-----------------KGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD  140 (197)
T ss_dssp             HHHHH-----------------TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             ccccc-----------------ceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhH
Confidence            43221                 0123468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccEEEeecCCCCCCCC--------------CCccCCCceEEcCCCCC
Q 019328          281 ALVEHLKQNPMFRVGLDVFEDEPYMK--------------PGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       281 aL~~aL~~g~i~gaalDV~~~EP~~~--------------~~L~~~~nvi~TPHia~  323 (342)
                      ||++||++|+++||+||||++||...              +|||++|||++|||+|+
T Consensus       141 aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         141 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99999999999999999999997421              36899999999999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-52  Score=365.59  Aligned_cols=183  Identities=28%  Similarity=0.438  Sum_probs=157.7

Q ss_pred             CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       119 ~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      |+++||||+++++|++.|+++.+++.+++|.|..+   ...++++.|++|||+|+|.||+.+|+++ ++|||+|++||++
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~---~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~   76 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL---AAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIE   76 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCccc---ccccccccceEEEEeecccchhhhhhhc-ccccceEeecccc
Confidence            68999999999999999999999999999988643   2356799999999999999999999997 8999999999987


Q ss_pred             hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      .....                  .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~~------------------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1          77 NKLPL------------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             CCCCC------------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred             ccchh------------------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhh
Confidence            54310                  112345689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCccEEEeecCCCCCCC-----CCCccCCCceEEcCCCCC
Q 019328          279 EVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       279 ~~aL~~aL~~g~i~gaalDV~~~EP~~-----~~~L~~~~nvi~TPHia~  323 (342)
                      ++||++||++|++.||+||||++||..     .+||+++|||++|||+||
T Consensus       139 e~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         139 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             hHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999999999999999999999999973     248999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.3e-51  Score=359.70  Aligned_cols=179  Identities=27%  Similarity=0.432  Sum_probs=161.3

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       120 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      +++||||++++||++.|++..+++.+++|.|....    ...+|.||||||||+|.||+.+|+++ ++|||+|++|||++
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~----~~~~l~gk~vgIiG~G~IG~~va~~l-~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCSTHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCcccCceEEEeccccccccceeee-eccccccccccccc
Confidence            57899999999999999999999999999885321    22479999999999999999999997 89999999999986


Q ss_pred             hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCH
Q 019328          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~  279 (342)
                      ...                    ......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||+
T Consensus        76 ~~~--------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~  135 (181)
T d1qp8a1          76 KEG--------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR  135 (181)
T ss_dssp             CCS--------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH
T ss_pred             ccc--------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccc
Confidence            431                    012246899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCccEEEeecCCCCCC-C-CCCccCCCceEEcCCCCC
Q 019328          280 VALVEHLKQNPMFRVGLDVFEDEPY-M-KPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       280 ~aL~~aL~~g~i~gaalDV~~~EP~-~-~~~L~~~~nvi~TPHia~  323 (342)
                      +||++||++|++.||++|||+.||+ + ++||+++|||++|||+||
T Consensus       136 ~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         136 DGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            9999999999999999999987765 3 368999999999999997

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=1.1e-26  Score=190.72  Aligned_cols=128  Identities=22%  Similarity=0.270  Sum_probs=112.6

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      +|+|||+++++++. ..+.|++. +++++..    ..+++++.+.+. ++|+++++..+++++++++++|+|  |+|+++
T Consensus         1 sMpkvli~~~~~~~-~~~~L~~~-~~v~~~~----~~~~~el~~~~~-~~d~ii~~~~~~i~~~~l~~~p~L--k~I~~~   71 (130)
T d1ygya2           1 SLPVVLIADKLAPS-TVAALGDQ-VEVRWVD----GPDRDKLLAAVP-EADALLVRSATTVDAEVLAAAPKL--KIVARA   71 (130)
T ss_dssp             CCCEEEECSSCCGG-GGTTSCSS-SEEEECC----TTSHHHHHHHGG-GCSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCCEEEEECCCCHH-HHHHHhCC-cEEEECC----CCCHHHHHHHcC-CCEEEEEcCcccchHHHHhhcccc--eEEeee
Confidence            58999999998874 35667654 5776543    247889999987 599999988889999999999997  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCC
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w  150 (342)
                      |+||||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++++|+|.|
T Consensus        72 g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          72 GVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             cccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            999999999999999999999999999999999999999999999988888888866

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.4e-23  Score=172.24  Aligned_cols=123  Identities=21%  Similarity=0.152  Sum_probs=102.1

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEE
Q 019328           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        13 ~~~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~   92 (342)
                      +.|||||+++++++. ..+.|++.|+......  ....+++++.+.+. ++|+++++..+++++++++++|+|  |+|++
T Consensus         2 k~kmKILv~d~i~~~-a~~~L~~~g~~~v~~~--~~~~~~~~l~~~~~-~~d~ii~~~~~~i~~~~i~~~p~L--k~I~~   75 (132)
T d1sc6a2           2 KDKIKFLLVEGVHQK-ALESLRAAGYTNIEFH--KGALDDEQLKESIR-DAHFIGLRSRTHLTEDVINAAEKL--VAIGA   75 (132)
T ss_dssp             CSSCCEEECSCCCHH-HHHHHHHTTCCCEEEC--SSCCCHHHHHHHTT-SCSEEEECSSCCBCHHHHHHCSSC--CEEEE
T ss_pred             CCCCEEEEECCCCHH-HHHHHHhCCCEEEEeC--CCCCCHHHHHHhhc-CCcEEEEecccccChhhhhccccc--eeEEE
Confidence            568999999999874 5788988876543222  33568999999987 599999988889999999999998  99999


Q ss_pred             cccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHH
Q 019328           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE  143 (342)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~  143 (342)
                      +|+||||||+++|+++||+|+|+||+++.+|||+++.||+  .|++..++.
T Consensus        76 ~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~  124 (132)
T d1sc6a2          76 FAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDN  124 (132)
T ss_dssp             CSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             ecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhC
Confidence            9999999999999999999999999999999998665554  444444443

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.88  E-value=2.5e-23  Score=170.70  Aligned_cols=122  Identities=16%  Similarity=0.265  Sum_probs=97.2

Q ss_pred             eEEEEeCCCCc-hHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEc
Q 019328           16 YRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        16 ~kvl~~~~~~~-~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~   93 (342)
                      |||++....+. .++++.+ ++.++++.....   .. .+++.+.+. ++|++++....++++++++++|++++|+|+++
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~---~~-~~~~~~~~~-~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~   75 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTE---FL-DENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSS---CC-CTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCC---CC-CHHHHHHhc-CCCEEEEecCCCCCHHHHhhcccCCeEEEEEc
Confidence            67888654333 2334444 456777765332   22 245555665 59999988888999999999997777999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHH
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD  142 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~  142 (342)
                      |+||||||+++|+++||+|+|+||+++++||||++++||++.|++..++
T Consensus        76 ~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          76 NVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH
Confidence            9999999999999999999999999999999999999999999986544

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.88  E-value=2.7e-22  Score=164.07  Aligned_cols=116  Identities=20%  Similarity=0.351  Sum_probs=98.3

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhh-ccCCceEEEc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALS-RAGGKAFSNM   93 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~l~~k~i~~~   93 (342)
                      |+|||++.++++. ..+.+++. ++++. ...+...+.+|+.+.++ ++|+++++..+++++++++++| +|  |+|+++
T Consensus         1 K~kVlit~~~~~~-~~~~l~~~-~~v~~-~~~~~~~s~~el~~~~~-~~d~ii~~~~~~i~~~~l~~~~~~L--K~I~~~   74 (129)
T d1gdha2           1 KKKILITWPLPEA-AMARARES-YDVIA-HGDDPKITIDEMIETAK-SVDALLITLNEKCRKEVIDRIPENI--KCISTY   74 (129)
T ss_dssp             CCEEEESSCCCHH-HHHHHHTT-SEEEE-CCSTTCCCHHHHHHHHT-TCSEEEEETTSCBCHHHHHHSCTTC--CEEEEE
T ss_pred             CCEEEEeCCCCHH-HHHHHHcC-CcEEE-eCCCCCCCHHHHHHHhc-CCCEEEEcCCchhhhHHHhhhhhcc--eeeeec
Confidence            6899999999874 56778764 57654 34445689999999998 5999998888899999999997 56  999999


Q ss_pred             ccccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHh
Q 019328           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR  136 (342)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R  136 (342)
                      |+|+||||+++|+++||+|+|+||+++++|||+++++|+.+.+
T Consensus        75 gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          75 SIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987765555553

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.85  E-value=2.4e-23  Score=168.42  Aligned_cols=121  Identities=11%  Similarity=0.112  Sum_probs=100.5

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~   95 (342)
                      |||+++.++|+ ++.+.+++. +++.  ...+           +. ++|+++++   +++++.++++|+|  |+|++.|+
T Consensus         1 Mki~v~~~lp~-e~~e~L~~~-~~v~--~~~d-----------~~-~~d~~l~~---~~~~~~l~~~~~L--k~i~~~~a   59 (121)
T d1qp8a2           1 MELYVNFELPP-EAEEELRKY-FKIV--RGGD-----------LG-NVEAALVS---RITAEELAKMPRL--KFIQVVTA   59 (121)
T ss_dssp             CEEECCSCCCH-HHHHHHHTT-CEEE--CSSC-----------CT-TBCCCCBS---CCCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEeCCCCH-HHHHHhhhc-ceEe--eccc-----------cc-ccceeeee---ccCHHHHhcCCCc--eEEEeccc
Confidence            68999999996 456777664 3443  2211           12 47777664   6889999999998  99999999


Q ss_pred             ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccCh
Q 019328           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~  175 (342)
                      |+||+|+++++ +||.|+|+||+|+.+||||++++||++.|+                              +||+|+|.
T Consensus        60 G~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~------------------------------l~i~G~G~  108 (121)
T d1qp8a2          60 GLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN------------------------------LITYATGG  108 (121)
T ss_dssp             CCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH------------------------------HHHHHTTS
T ss_pred             CcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC------------------------------EEEEcCCH
Confidence            99999999985 699999999999999999999999999873                              57999999


Q ss_pred             HHHHHHHHHHhcCC
Q 019328          176 IGSAYARMMVEGFK  189 (342)
Q Consensus       176 IG~~vA~~l~~a~g  189 (342)
                      ||+++|+|+ ++||
T Consensus       109 iG~~iA~r~-~a~G  121 (121)
T d1qp8a2         109 RPRNIAKRE-DYIG  121 (121)
T ss_dssp             CCSCBCCGG-GTC-
T ss_pred             HHHHHHHHH-HhcC
Confidence            999999995 8997

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.82  E-value=3.4e-21  Score=164.03  Aligned_cols=117  Identities=16%  Similarity=0.084  Sum_probs=101.6

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CcCccHHHHHHhhccCCceEEEcccccCccChhHHH
Q 019328           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (342)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~~~~~~~~~~~~~~l~~k~i~~~g~G~d~id~~~a~  106 (342)
                      +.+.|++.|+++......  ..+.+++.+.+.+ +|++|+++  ...+++++++++|+|  |+|+++|+|+||||+++|+
T Consensus        59 lr~~Le~~GhelV~~sd~--~~~~~el~k~l~D-ADivI~~pf~~~~lt~e~i~~ap~L--KlI~~~g~G~D~VDl~aa~  133 (186)
T d2naca2          59 LRKYLESNGHTLVVTSDK--DGPDSVFERELVD-ADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (186)
T ss_dssp             CHHHHHHTTCEEEEESCC--SSTTSHHHHHHTT-CSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEecCC--CCChHHHHhhccc-CCEEEEecccccccCHHHHhcCccc--eEEEEeccCCccccHHHHH
Confidence            467899999998765443  3355678888874 99999874  568999999999998  9999999999999999999


Q ss_pred             hCCceEEcCCCCCchhHHHHH--------HHHHHHHHhchHHHHHHHHcCCC
Q 019328          107 KYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIVEADEFMRAGLY  150 (342)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~a--------l~l~L~~~R~~~~~~~~~~~g~w  150 (342)
                      ++||.|+|+||+|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       134 e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         134 DRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             hCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999999999        77888888999887777888876

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.82  E-value=1.7e-20  Score=154.16  Aligned_cols=125  Identities=19%  Similarity=0.202  Sum_probs=95.2

Q ss_pred             EEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEccc
Q 019328           17 RVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        17 kvl~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g~   95 (342)
                      ||++-...+. ..+++.+.+..+++++...+ ...+ +++.+.+. ++|+++++...+++++++++++++++|+|++.|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~-~~~~-~e~~~~~~-~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTD-KLLT-PETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECS-SCCC-TTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECC-CCCC-HHHHHHhc-CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence            6776544433 33455555554444443332 2334 45666665 5999999888899999999998877899999999


Q ss_pred             ccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCC
Q 019328           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (342)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w  150 (342)
                      ||||||+++|+++||.|||+|++   +||||++++||+++|++.   ..+.+|.|
T Consensus        79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~---~~~~~~k~  127 (134)
T d1j4aa2          79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN---LELVEGKE  127 (134)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHH---HHHHTTCC
T ss_pred             CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHh---HHHhhhhc
Confidence            99999999999999999999997   689999999999999874   44555554

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.81  E-value=1.5e-20  Score=153.85  Aligned_cols=124  Identities=20%  Similarity=0.243  Sum_probs=95.4

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCcCccHHHHHHhhccCCceEEEcc
Q 019328           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~kvl~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~l~~k~i~~~g   94 (342)
                      +++|++.+..+-......|++. .++.++..    .+.+|+.+.+.+.+|+++++...++++++++++|+|  |+|+++|
T Consensus         1 mP~v~~ld~~d~~~e~~~L~~~-~~v~~~~~----~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~L--k~I~~~g   73 (133)
T d1mx3a2           1 MPLVALLDGRDCTVEMPILKDV-ATVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIVRIG   73 (133)
T ss_dssp             CCEEEESSCSCCTTTHHHHTTT-CEEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEEESS
T ss_pred             CCEEEEecCCcchhhHHHhccc-ceEEEecC----CChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCC--eEEEEcC
Confidence            4677776655433235667654 46655322    234454443323478888888889999999999997  9999999


Q ss_pred             cccCccChhHHHhCCceEEcCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCC
Q 019328           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (342)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~w  150 (342)
                      +|+||||+++|+++||.|+|+||+++ +||||++++||+++|++++.    .+|.|
T Consensus        74 ~G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a----~~g~~  124 (133)
T d1mx3a2          74 SGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA----ITGRI  124 (133)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHH----HHSCT
T ss_pred             CCcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHH----Hhccc
Confidence            99999999999999999999999988 57999999999999999755    45555

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.8e-17  Score=139.20  Aligned_cols=121  Identities=21%  Similarity=0.345  Sum_probs=98.8

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +..|.||+++|+|||.||+.+|+++ ++|||+|++||++|....++..++|               ...++++++..||+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG~---------------~v~~~~~a~~~adi   82 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEGY---------------EVTTMDEACQEGNI   82 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTC---------------EECCHHHHTTTCSE
T ss_pred             CceecCCEEEEeccccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCce---------------EeeehhhhhhhccE
Confidence            4579999999999999999999997 8999999999999977666544332               34689999999999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecC-CCccCCHHHHHHHHHcCCccEEEeecCC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~s-RG~~vd~~aL~~aL~~g~i~gaalDV~~  300 (342)
                      ++.+.    .++++|+.+.|++||+|+++.|++ +..-||.++|.+...+.+.....+|.|.
T Consensus        83 vvtaT----Gn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          83 FVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             EEECS----SCSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEecC----CCccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            98874    478999999999999999999986 6777999999886544434444445443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.45  E-value=2.4e-13  Score=113.15  Aligned_cols=104  Identities=20%  Similarity=0.320  Sum_probs=88.6

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ..+.||++.|+|||.+|+.+|+++ +++|++|++++..|-...++..++|               ...+++++++.+|++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~mdGf---------------~v~~~~~a~~~aDi~   82 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEGF---------------NVVTLDEIVDKGDFF   82 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTTC---------------EECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEecccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhcCC---------------ccCchhHccccCcEE
Confidence            468999999999999999999997 8999999999999877666544332               347999999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-CCHHHHHH
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~~aL~~  284 (342)
                      +.+..    .+++|+.+.|++||+|+++.|++.-.. ||.++|.+
T Consensus        83 vTaTG----n~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          83 ITCTG----NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             EECCS----SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             EEcCC----CCccccHHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            99976    456899999999999999999998775 57666653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.42  E-value=1.6e-13  Score=115.18  Aligned_cols=113  Identities=16%  Similarity=0.167  Sum_probs=92.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|||||+|.||+.+|++| ..-|.+|++||+++++. +.+.+             .+.....++.|++++||+|++|+|
T Consensus         1 MkIgiIGlG~MG~~~A~~L-~~~G~~V~~~d~~~~~~-~~~~~-------------~~~~~~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADVIA-------------AGAETASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHH-------------TTCEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEehhHHHHHHHHHH-HHCCCeEEEEeCCcchh-HHHHH-------------hhhhhcccHHHHHhCCCeEEEEcC
Confidence            3799999999999999998 47799999999998653 22211             112345789999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      ..++.+.++.  ...+..+++|.++|++++...-....+.+.+.+..+..
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~  115 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEM  115 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence            9888888763  45888999999999999999988899999999876544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.36  E-value=3.5e-12  Score=106.82  Aligned_cols=151  Identities=14%  Similarity=0.068  Sum_probs=96.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|||||+|.||..+|+.| +..|.+|++|||+++......         ..+..   . ...+..+.+++||+|++++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~~~a~---------~~~~~---~-~~~~~~~~~~~~DiIilavp   66 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEKAV---------ERQLV---D-EAGQDLSLLQTAKIIFLCTP   66 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHH---------HTTSC---S-EEESCGGGGTTCSEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHHHHHH---------Hhhcc---c-eeeeecccccccccccccCc
Confidence            3799999999999999998 688999999999875432211         11111   1 12233467899999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CCCCccCCCceEEcCCCCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIAS  323 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvi~TPHia~  323 (342)
                      . .++..++ .+....+++++++++++......... .+.+...-+..-.+...+...+  ..+.|+.-..+++||+-++
T Consensus        67 ~-~~~~~vl-~~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~  143 (165)
T d2f1ka2          67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (165)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             H-hhhhhhh-hhhhhhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCC
Confidence            4 4566666 46778899999999998765333333 3344433333333322222211  1245788888999998664


Q ss_pred             CcHHHHHHHHH
Q 019328          324 ASKWTREGMAT  334 (342)
Q Consensus       324 ~t~~~~~~~~~  334 (342)
                       +.+..+.+..
T Consensus       144 -~~~~~~~v~~  153 (165)
T d2f1ka2         144 -DPEQLACLRS  153 (165)
T ss_dssp             -CHHHHHHHHH
T ss_pred             -CHHHHHHHHH
Confidence             4455444443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.32  E-value=1.5e-12  Score=109.15  Aligned_cols=116  Identities=19%  Similarity=0.216  Sum_probs=93.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      ++|||||+|.||..+|++|+ .-|.+|.+||++++... .+..             .+.....++.+++..+|+|++|+|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~-~~g~~v~~~d~~~~~~~-~~~~-------------~~~~~~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLL-KAGYLLNVFDLVQSAVD-GLVA-------------AGASAARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSSHHHHH-HHHH-------------TTCEECSSHHHHHTSCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHHH-HCCCeEEEEECchhhhh-hhhh-------------hhccccchhhhhccccCeeeeccc
Confidence            58999999999999999984 67999999999976532 2111             122345689999999999999999


Q ss_pred             CCcccccccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeec
Q 019328          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (342)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV  298 (342)
                      ..+..+.++.  ...+..+++|.++||++...+-+...+.+.+++..+.  .+|.
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             chhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            8888777653  4578889999999999999999999999999887653  3454

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.32  E-value=1.2e-11  Score=103.90  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=103.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-HhhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~sDiV~l  242 (342)
                      |+|+|||+|.||.++|+.| +..|  .+|++||++.+......         ..+...   ....+.++ ....+|+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L-~~~g~~~~I~~~D~~~~~~~~a~---------~~~~~~---~~~~~~~~~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKAV---------DLGIID---EGTTSIAKVEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHHH---------HTTSCS---EEESCGGGGGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHH-HhcCCCeEEEEEECChHHHHHHH---------Hhhcch---hhhhhhhhhhccccccccc
Confidence            5899999999999999998 4444  58999999876532221         111111   11233333 3357999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC--CCCCccCCCceEEcCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPH  320 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvi~TPH  320 (342)
                      |+|. .++..++ ++....+++++++++++.....-.+++.+.+...-+.+--+...+..-+  ..+.|++-.++++|||
T Consensus        69 a~p~-~~~~~vl-~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~  146 (171)
T d2g5ca2          69 SSPV-RTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPT  146 (171)
T ss_dssp             CSCH-HHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCC
T ss_pred             cCCc-hhhhhhh-hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecC
Confidence            9992 3344444 4566779999999999987666666777777776566766666554422  2356999999999999


Q ss_pred             CCCCcHHHHHHHH
Q 019328          321 IASASKWTREGMA  333 (342)
Q Consensus       321 ia~~t~~~~~~~~  333 (342)
                      -.. +.+..+.+.
T Consensus       147 ~~~-~~~~~~~v~  158 (171)
T d2g5ca2         147 KKT-DKKRLKLVK  158 (171)
T ss_dssp             SSS-CHHHHHHHH
T ss_pred             CCC-CHHHHHHHH
Confidence            764 455544433

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.20  E-value=1.1e-11  Score=105.03  Aligned_cols=121  Identities=12%  Similarity=0.174  Sum_probs=91.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      -++|||||+|.||..+|++|+ .-|.+|++|||++++. +++.+...     ......+.....++.+.+..+|.+++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~-~~G~~V~v~dr~~~~~-~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKV-DDFLANEA-----KGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHH-HHHHHTTT-----TTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CCcEEEEeEhHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHHHHhcc-----ccccccchhhhhhhhhhhcccceEEEec
Confidence            368999999999999999984 6799999999998653 22221100     0011112223345667788899999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      |..+++...+ ...+..+++|.++||++...+-+...+.+.+.+..+..
T Consensus        75 ~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~  122 (176)
T d2pgda2          75 KAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF  122 (176)
T ss_dssp             CTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCce
Confidence            9888877754 57888999999999999999999999999998875543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=6.1e-10  Score=92.22  Aligned_cols=110  Identities=18%  Similarity=0.220  Sum_probs=81.2

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      +|||||+|.||..+|++|. .-|..+ +|+++..+..+ .....+             . ..+..+.+.++|++++++|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~-~~g~~~-~~~~~~~~~~~-~~~~~~-------------~-~~~~~~~~~~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLA-RRFPTL-VWNRTFEKALR-HQEEFG-------------S-EAVPLERVAEARVIFTCLPT   64 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHH-TTSCEE-EECSSTHHHHH-HHHHHC-------------C-EECCGGGGGGCSEEEECCSS
T ss_pred             eEEEEeHHHHHHHHHHHHH-hCCCEE-EEeCCHHHHHH-HHHHcC-------------C-cccccccccceeEEEecccc
Confidence            6999999999999999985 556655 56665543322 111111             1 12334566789999999998


Q ss_pred             CcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       247 t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      .++.... ....+..++++.++||+++...-....+.+.+++..+...
T Consensus        65 ~~~v~~~-~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l  111 (156)
T d2cvza2          65 TREVYEV-AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL  111 (156)
T ss_dssp             HHHHHHH-HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             hhhhhhh-hccccccccccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence            7776654 4578899999999999999999999999999998765443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.92  E-value=9e-10  Score=90.55  Aligned_cols=93  Identities=13%  Similarity=0.161  Sum_probs=71.4

Q ss_pred             ccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      ...-++||||| +|.||+++|++| +..|.+|.+||+....                           +.++.++.+|++
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~---------------------------~~~~~~~~~~~v   57 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA---------------------------VAESILANADVV   57 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG---------------------------GHHHHHTTCSEE
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHH-HHcCCCcEeccccccc---------------------------ccchhhhhcccc
Confidence            34567999999 999999999998 6889999999987542                           345667899999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHH
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~  284 (342)
                      ++++|.  .....+-.+.+..+++++++++++.-..--.+++.+
T Consensus        58 ~~~~~~--~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~   99 (152)
T d2pv7a2          58 IVSVPI--NLTLETIERLKPYLTENMLLADLTSVKREPLAKMLE   99 (152)
T ss_dssp             EECSCG--GGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHH
T ss_pred             ccccch--hhheeeeecccccccCCceEEEecccCHHHHHHHHH
Confidence            999994  333335577888999999999998755333333333

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.91  E-value=9.6e-10  Score=90.56  Aligned_cols=106  Identities=9%  Similarity=0.019  Sum_probs=75.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|||||+|+||+.+|+.| ..-|.+|++||+.+.+.......++              ....+++|++.+||+|++|+|
T Consensus         1 MkIgiIG~G~mG~~ia~~l-~~~g~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~e~~~~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPSTIERARTV--------------GVTETSEEDVYSCPVVISAVT   65 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHHHHHHHHH--------------TCEECCHHHHHTSSEEEECSC
T ss_pred             CEEEEEcHHHHHHHHHHHH-HHCCCeEEEEcCchhHHHHHhhhcc--------------cccccHHHHHhhcCeEEEEec
Confidence            3799999999999999998 4679999999987655432222111              123578899999999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      .... ...+ .+...  ..+.++|+++.........+.+.+++..
T Consensus        66 ~~~~-~~~~-~~~~~--~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          66 PGVA-LGAA-RRAGR--HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             GGGH-HHHH-HHHHT--TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             CchH-HHHH-Hhhcc--cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence            5432 2222 12222  2367899999988877788888876543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.90  E-value=8.9e-09  Score=84.78  Aligned_cols=107  Identities=18%  Similarity=0.318  Sum_probs=79.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|||||+|+||+++++.| ...|.++++|+|+.++. ++..+.++            .....+.++++++||+|+++++
T Consensus         1 MkIg~IG~G~mG~al~~~l-~~~~~~i~v~~r~~~~~-~~l~~~~g------------~~~~~~~~~~~~~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQLA------------LPYAMSHQDLIDQVDLVILGIK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHHT------------CCBCSSHHHHHHTCSEEEECSC
T ss_pred             CEEEEEeccHHHHHHHHHH-HhCCCeEEEEcChHHhH-Hhhccccc------------eeeechhhhhhhccceeeeecc
Confidence            3799999999999999998 56789999999987543 22222221            2234689999999999999997


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC-CccEE
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRV  294 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g-~i~ga  294 (342)
                        |+..    ++.++.++++..+|++.-|  +..+.|.+.|..+ ++..+
T Consensus        67 --p~~~----~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~~~~ivr~  108 (152)
T d2ahra2          67 --PQLF----ETVLKPLHFKQPIISMAAG--ISLQRLATFVGQDLPLLRI  108 (152)
T ss_dssp             --GGGH----HHHHTTSCCCSCEEECCTT--CCHHHHHHHHCTTSCEEEE
T ss_pred             --hHhH----HHHhhhcccceeEeccccc--ccHHHHHhhhcccccchhh
Confidence              4322    5678889999999999877  4567777777543 34333

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.81  E-value=4.8e-09  Score=88.37  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=90.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHH---HHhhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~~sDiV~l  242 (342)
                      .+|||||+|.||..+|++|+ .-|.+|++|||++++.. .+.+.....    . .........+.+   ..+..++.+.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~-~~G~~V~~~dr~~~~~~-~l~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIA-EKGFKVAVFNRTYSKSE-EFMKANASA----P-FAGNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHHH-HHHHHTTTS----T-TGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHHH-HCCCeEEEEECCHHHHH-HHHHcCCcc----c-cccchhhhhhhhHHHHhcccceEEEE
Confidence            46999999999999999984 67999999999987532 222221100    0 000011123333   44578899999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~  301 (342)
                      +++........+ ......++++.++||+++...-+...+.+.|.+..+...-.-|+..
T Consensus        75 ~~~~~~~~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~  132 (178)
T d1pgja2          75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGG  132 (178)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESH
T ss_pred             eecCcchhhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCC
Confidence            998766666555 4567788999999999999999999999999988776554444443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.80  E-value=1.2e-08  Score=85.00  Aligned_cols=104  Identities=17%  Similarity=0.321  Sum_probs=77.7

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+.-.+|.|||.|..|...++.+ +++|++|.++|.+.... +.....++....      ........+++.+++||+|+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A-~~lGA~V~~~D~~~~~l-~~l~~~~~~~~~------~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERL-SYLETLFGSRVE------LLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHHGGGSE------EEECCHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEECCChHHHHHHHHH-hhCCCEEEEEeCcHHHH-HHHHHhhcccce------eehhhhhhHHHhhccCcEEE
Confidence            46778999999999999999984 89999999999987642 222222221111      11112235788999999998


Q ss_pred             EcC-CCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          242 LHP-VLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~l-plt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .++ --...+-++|.++.++.||||+++|+++-
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             EeeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence            873 23556789999999999999999999963

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.66  E-value=6.9e-08  Score=80.68  Aligned_cols=120  Identities=15%  Similarity=0.208  Sum_probs=77.9

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccC-CCC--CccccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ--PVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .||++|||.|.||..+|..| ...|.+|.+|||+++.. +..... +...... ...  ........++.|.++.||+|+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l-~~~G~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDR-GAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHH-TSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECccHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHc-CCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            48999999999999999998 46799999999986542 221111 1000000 000  011122467899999999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~  290 (342)
                      +++|. ..++.+ -++....++++.+++- .-|....+..+.+.+....
T Consensus        78 i~v~~-~~~~~~-~~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          78 IVVPA-IHHASI-AANIASYISEGQLIIL-NPGATGGALEFRKILRENG  123 (184)
T ss_dssp             ECSCG-GGHHHH-HHHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTT
T ss_pred             EEEch-hHHHHH-HHHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhc
Confidence            99993 334443 3456678899998874 4454455556667776554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.55  E-value=1.4e-07  Score=79.35  Aligned_cols=113  Identities=20%  Similarity=0.257  Sum_probs=75.6

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC------CCCccc----------c
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG------EQPVTW----------K  225 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----------~  225 (342)
                      .+.--+|.|||.|..|...++. ++++|++|.++|.++... +....-++.++....      +..-++          .
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~-A~~lGA~V~v~D~~~~~~-~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIAT-AKRLGAVVMATDVRAATK-EQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHH-HHHTTCEEEEECSCSTTH-HHHHHTTCEECCC-----------------------CC
T ss_pred             CcCCcEEEEEcCcHHHHHHHHH-HHHcCCEEEEEeccHHHH-HHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            3566799999999999999998 589999999999887542 222111211111000      000000          0


Q ss_pred             ccCCHHHHhhcCCEEEEc--CCCCcccccccCHhHHccCCCCcEEEecC--CCccC
Q 019328          226 RASSMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (342)
Q Consensus       226 ~~~~l~ell~~sDiV~l~--lplt~~t~~li~~~~l~~mk~gailIN~s--RG~~v  277 (342)
                      ....+.+.+++||+|+.+  +| ...+-.+|.++.++.||||+++|+++  +|+.+
T Consensus       104 ~~~~l~~~l~~aDlVI~talip-G~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~  158 (183)
T d1l7da1         104 QAEAVLKELVKTDIAITTALIP-GKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  158 (183)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCT-TSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHHHHHHHHHhhhhheeeeecC-CcccceeehHHHHHhcCCCcEEEEEeecCCCcc
Confidence            112355668899999866  56 34477899999999999999999996  45544

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.52  E-value=6e-08  Score=75.56  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=69.0

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      -+|+||+|.|||.|.+|.+-|+.| ..+|++|.++++...+....+.+.        +  ...+....--++.+..+++|
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~~--------~--~i~~~~~~~~~~dl~~~~lv   76 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWANE--------G--MLTLVEGPFDETLLDSCWLA   76 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHTT--------T--SCEEEESSCCGGGGTTCSEE
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHhc--------C--CceeeccCCCHHHhCCCcEE
Confidence            489999999999999999999998 689999999999877654433211        1  11111111113446778998


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +.+...     +.+|++..+.+|+..++||++
T Consensus        77 ~~at~d-----~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          77 IAATDD-----DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EECCSC-----HHHHHHHHHHHHHTTCEEEET
T ss_pred             eecCCC-----HHHHHHHHHHHHHcCCEEEeC
Confidence            887553     236777888888999999975

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=1.6e-08  Score=82.86  Aligned_cols=89  Identities=12%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             EEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019328          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (342)
Q Consensus       168 vGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt  247 (342)
                      |||||+|+||+.+|+.| +.-+-.+.+|+|++.+. +.+.+.+             .....++++++++||+|++|+|..
T Consensus         2 IgfIG~G~mg~~l~~~L-~~~~~~~~v~~R~~~~~-~~l~~~~-------------~~~~~~~~~~~~~~DiVil~v~d~   66 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECL-KDRYEIGYILSRSIDRA-RNLAEVY-------------GGKAATLEKHPELNGVVFVIVPDR   66 (153)
T ss_dssp             CEEESCCHHHHHHHHTT-C----CCCEECSSHHHH-HHHHHHT-------------CCCCCSSCCCCC---CEEECSCTT
T ss_pred             EEEEeCcHHHHHHHHHH-HhCCCEEEEEeCChhhh-cchhhcc-------------cccccchhhhhccCcEEEEeccch
Confidence            79999999999999987 44232335799987653 2222221             112357788999999999999943


Q ss_pred             cccccccCHhHHccC-CCCcEEEecCCCccC
Q 019328          248 KTTYHLINKERLATM-KKEAILVNCSRGPVI  277 (342)
Q Consensus       248 ~~t~~li~~~~l~~m-k~gailIN~sRG~~v  277 (342)
                       +.     .+.++.+ +++.++|+++.+...
T Consensus        67 -~i-----~~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          67 -YI-----KTVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             -TH-----HHHHTTTCCSSCCEEECCSSSCG
T ss_pred             -hh-----hHHHhhhcccceeeeecccchhh
Confidence             22     3455666 479999999987654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.44  E-value=8.3e-07  Score=73.27  Aligned_cols=98  Identities=15%  Similarity=0.229  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+.++++.|||.|.||+.+++.| ...|. ++.+++|+.++. ..+...++          ..+....++.+.+.++|+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L-~~~g~~~i~v~nRt~~ka-~~l~~~~~----------~~~~~~~~~~~~l~~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDLG----------GEAVRFDELVDHLARSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHHT----------CEECCGGGHHHHHHTCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHH-HhcCCcEEEEEcCcHHHH-HHHHHhhh----------cccccchhHHHHhccCCEE
Confidence            68999999999999999999998 56787 699999986542 22322222          1122346788889999999


Q ss_pred             EEcCCCCcccccccCHhHHccC------CCCcEEEecCCC
Q 019328          241 SLHPVLDKTTYHLINKERLATM------KKEAILVNCSRG  274 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~m------k~gailIN~sRG  274 (342)
                      +.|++   ....+|+++.++..      ++..+||+.|.-
T Consensus        89 i~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          89 VSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             EECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             EEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            99976   44567777766432      234477776543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.43  E-value=7.8e-07  Score=76.27  Aligned_cols=107  Identities=21%  Similarity=0.263  Sum_probs=79.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sDiV  240 (342)
                      +|.||||+|-|+|++|+.+|+.| ..+|++|+++|.+.......  ...            +. ...+.++++. .||++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L-~~~Gakvvv~d~d~~~~~~~--~~~------------g~-~~~~~~~~~~~~~DI~   87 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTERVAHA--VAL------------GH-TAVALEDVLSTPCDVF   87 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH--HHT------------TC-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEecchHHHHHHH--Hhh------------cc-cccCccccccccceee
Confidence            69999999999999999999998 68999999999886542211  111            11 2346677765 79998


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      +-|     .+.+.|+++..++++- .+++..+.+++-+++ ..+.|.++.|
T Consensus        88 iPc-----A~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI  131 (201)
T d1c1da1          88 APC-----AMGGVITTEVARTLDC-SVVAGAANNVIADEA-ASDILHARGI  131 (201)
T ss_dssp             EEC-----SCSCCBCHHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTC
T ss_pred             ecc-----cccccccHHHHhhhhh-heeeccCCCCcchhh-HHHHhcccce
Confidence            866     3567899999999974 477777888877764 3456666655

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.32  E-value=7e-07  Score=72.84  Aligned_cols=107  Identities=19%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|||||+|+||+++++.|.++-+.+|++|||+++.. +.+.+.++            .....+.++ +++||+|+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~~~------------~~~~~~~~~-v~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKELG------------VETSATLPE-LHSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHHTC------------CEEESSCCC-CCTTSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhhcc------------ccccccccc-ccccceEEEecC
Confidence            3799999999999999987554348999999997643 22222221            122334444 577999999998


Q ss_pred             CCcccccccCHhHHccCC-CCcEEEecCCCccCCHHHHHHHHHc-CCccEE
Q 019328          246 LDKTTYHLINKERLATMK-KEAILVNCSRGPVIDEVALVEHLKQ-NPMFRV  294 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk-~gailIN~sRG~~vd~~aL~~aL~~-g~i~ga  294 (342)
                        |+.-    .+.++.++ .+.++|++.-|--  .+.|.+.|.. .++..+
T Consensus        67 --P~~~----~~v~~~l~~~~~~viS~~ag~~--~~~l~~~l~~~~~iir~  109 (152)
T d1yqga2          67 --PQDM----EAACKNIRTNGALVLSVAAGLS--VGTLSRYLGGTRRIVRV  109 (152)
T ss_dssp             --HHHH----HHHHTTCCCTTCEEEECCTTCC--HHHHHHHTTSCCCEEEE
T ss_pred             --HHHH----HHhHHHHhhcccEEeecccCCC--HHHHHHHhCcCcceEee
Confidence              5321    23344443 4789998887764  4667777643 344444

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.1e-06  Score=71.87  Aligned_cols=129  Identities=15%  Similarity=0.144  Sum_probs=85.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh-hhhhhccCCCCC-------------ccccccCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQP-------------VTWKRASS  229 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~~-------------~~~~~~~~  229 (342)
                      |+|+|||.|.||+.+|..++ ..|++|+.||++++....  +..+. +....+ .+...             .......+
T Consensus         5 kkvaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLRKVAK-KKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHHHHHH-TTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             EEEEEECcCHHHHHHHHHHH-hCCCcEEEEECChHHHHHHHhhHHHHHHHHHH-hhhhccchhhHHHHHHHHhhccccch
Confidence            79999999999999999974 789999999999763211  11111 110011 11100             01123568


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecC
Q 019328          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (342)
Q Consensus       230 l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~  299 (342)
                      +.+.++.||+|+=++|-+-+.+.-+-++.=+.++++++|...+.+-  ....|.+.+.. +=+..++=-|
T Consensus        83 ~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~-p~r~ig~Hff  149 (192)
T d1f0ya2          83 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTR-QDRFAGLHFF  149 (192)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEEC
T ss_pred             hHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhccC-HhHEEeeccc
Confidence            8899999999999999888888777777777789999987655443  34556666553 3334444333

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.14  E-value=5.6e-06  Score=69.77  Aligned_cols=153  Identities=18%  Similarity=0.163  Sum_probs=92.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--Hh-hhhhhhccCCCCCcc-------ccccCCHHHHhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQPVT-------WKRASSMDEVLR  235 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-------~~~~~~l~ell~  235 (342)
                      ++|+|||.|.||+.+|..++ ..|++|..||++++......  .. .+..........+..       .....+.+ .+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~   82 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFG   82 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGG
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-ccc
Confidence            57999999999999998874 67999999999876421111  00 010000000000000       01122333 468


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCce
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nv  315 (342)
                      .||+|+=++|-+.+.+.-+-++.-+.++++++|...+.+-.+  ..|.+.+.. +=...++=.|.+  +...||.+   |
T Consensus        83 ~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~-p~r~~g~Hf~nP--~~~~~lVE---i  154 (186)
T d1wdka3          83 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKR-PENFVGMHFFNP--VHMMPLVE---V  154 (186)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSC-GGGEEEEECCSS--TTTCCEEE---E
T ss_pred             ccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhccC-chheEeeccccC--cccCCeEE---E
Confidence            899999999999988887888888889999999876665444  556666543 223333333332  21223433   5


Q ss_pred             EEcCCCCCCcHHH
Q 019328          316 IVVPHIASASKWT  328 (342)
Q Consensus       316 i~TPHia~~t~~~  328 (342)
                      +-+|+..-.+.+.
T Consensus       155 v~~~~T~~~~~~~  167 (186)
T d1wdka3         155 IRGEKSSDLAVAT  167 (186)
T ss_dssp             EECSSCCHHHHHH
T ss_pred             CCCCCCCHHHHHH
Confidence            6677665444333

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=2.6e-06  Score=63.63  Aligned_cols=70  Identities=23%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      +++||+|.|+|+|..|+++|+.| ...|++|++||.+..+.....       +..    .........-++.+.+.|+|+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLDK-------LPE----AVERHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHH-HHTTCCCEEEESSSSCTTGGG-------SCT----TSCEEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHH-HHCCCEEEEeeCCcCchhHHH-------Hhh----ccceeecccchhhhccCCEEE
Confidence            58899999999999999999997 689999999998765321110       110    011111112255678899999


Q ss_pred             Ec
Q 019328          242 LH  243 (342)
Q Consensus       242 l~  243 (342)
                      +.
T Consensus        70 ~S   71 (93)
T d2jfga1          70 AS   71 (93)
T ss_dssp             EC
T ss_pred             EC
Confidence            87

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.03  E-value=3.3e-06  Score=70.01  Aligned_cols=96  Identities=19%  Similarity=0.219  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH-HHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      -|++|+|+|||||.-|++=|..| +-.|++|++=-|...+..+ +..+              ++ ...+++|..++||+|
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNL-rDSG~~V~VGLr~gs~s~~~A~~~--------------Gf-~v~~~~eA~~~aDii   76 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAKAEAH--------------GL-KVADVKTAVAAADVV   76 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHHHHHT--------------TC-EEECHHHHHHTCSEE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhh-hhcCCCEEEEcCCCCccHHHHhhh--------------cc-ccccHHHHhhhcCee
Confidence            47899999999999999999998 6888888765444332111 1111              11 246899999999999


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      .+.+|.. .-..++.++....||+|+.|. .+.|=
T Consensus        77 m~L~PD~-~q~~vy~~~I~p~lk~g~~L~-FaHGf  109 (182)
T d1np3a2          77 MILTPDE-FQGRLYKEEIEPNLKKGATLA-FAHGF  109 (182)
T ss_dssp             EECSCHH-HHHHHHHHHTGGGCCTTCEEE-ESCCH
T ss_pred             eeecchH-HHHHHHHHhhhhhcCCCcEEE-Eeccc
Confidence            9999932 234455677889999998886 44553

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.01  E-value=2.5e-06  Score=72.25  Aligned_cols=109  Identities=13%  Similarity=0.150  Sum_probs=67.1

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ++-++|+|||.|.+|.++|..|+ .-|.+|..|+|+.+... ..... ........-..+.......+++++++.||+|+
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La-~~g~~V~l~~r~~~~~~-~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~ii   82 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLS-KKCREVCVWHMNEEEVR-LVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIIL   82 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHH-TTEEEEEEECSCHHHHH-HHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEE
T ss_pred             ceeceEEEECCCHHHHHHHHHHH-HcCCeEEEEEecHHHHH-HHhhcccccccccccccccccccchhhhhccCCCCEEE
Confidence            44568999999999999999984 66789999998765321 11100 00000000111122234568999999999999


Q ss_pred             EcCCCCcccccccCHh--H--HccCCCCcEEEecCCC
Q 019328          242 LHPVLDKTTYHLINKE--R--LATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~lplt~~t~~li~~~--~--l~~mk~gailIN~sRG  274 (342)
                      +++| +...+.++.+-  .  ....+++..+|+++-|
T Consensus        83 iavP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          83 FVIP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             ECSC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             EcCc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            9999 33334333211  0  1123567788998877

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.94  E-value=4.4e-05  Score=64.78  Aligned_cols=159  Identities=11%  Similarity=0.048  Sum_probs=92.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhccCCCCCccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ++|+|||+|.+|..+|..++ ..|.+|++||.+.+.- +....+..        ..+.... ..-......++++.++.|
T Consensus         1 MkI~ViGlG~vGl~~a~~la-~~g~~V~g~D~n~~~i-~~ln~g~~p~~e~~~~~~l~~~~-~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKI-DLINQGKSPIVEPGLEALLQQGR-QTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHH-HTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHhHHHHHHHHH-hCCCcEEEEeCCHHHH-HHhcccCCcccchhhhhhhhhhh-cccccccCCCHHHHHhhC
Confidence            47999999999999999985 7799999999876431 11100000        0000000 000112346889999999


Q ss_pred             CEEEEcCCCCccccc----------ccC--HhHHccCCCCcEEEecCCCccCCHHHHHHHHH-c--CCccEEEee-cCCC
Q 019328          238 DVISLHPVLDKTTYH----------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK-Q--NPMFRVGLD-VFED  301 (342)
Q Consensus       238 DiV~l~lplt~~t~~----------li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~-~--g~i~gaalD-V~~~  301 (342)
                      |++++|+|. |....          .++  ...++..+++.++|.-|...+=-.+.+...+- +  +...+--+. +|.+
T Consensus        78 d~i~i~VpT-P~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~P  156 (202)
T d1mv8a2          78 DVSFICVGT-PSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP  156 (202)
T ss_dssp             SEEEECCCC-CBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred             CEEEEecCc-cccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhh
Confidence            999999994 32111          111  13556678899999999987766666554432 1  222111112 2455


Q ss_pred             CCCCC----CCccCCCceEEcCCCCCCcHHHHHHH
Q 019328          302 EPYMK----PGLSEMKNAIVVPHIASASKWTREGM  332 (342)
Q Consensus       302 EP~~~----~~L~~~~nvi~TPHia~~t~~~~~~~  332 (342)
                      |=...    ..+...|++++    |+.+.++.+.+
T Consensus       157 E~~~~G~a~~d~~~~~~iVi----G~~~~~~~~~~  187 (202)
T d1mv8a2         157 EFLRESTAIKDYDFPPMTVI----GELDKQTGDLL  187 (202)
T ss_dssp             CCCCTTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred             hhhcccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence            55432    24667777665    44556665544

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.93  E-value=1.6e-05  Score=66.40  Aligned_cols=107  Identities=20%  Similarity=0.220  Sum_probs=64.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh-hccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|.+|..+|..|+ .-|.+|..|.|..++........-... ...............+++++++.||+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            47999999999999999985 557899999886443211111000000 0000001111223468899999999999999


Q ss_pred             CCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      | +...+..+ ++....+++. .+|.++.|..
T Consensus        80 p-s~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          80 S-TDGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             C-GGGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             c-hhhhHHHH-Hhhccccccc-eecccccCcc
Confidence            9 33344433 3445556665 5555666654

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.88  E-value=1.2e-05  Score=68.77  Aligned_cols=99  Identities=21%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             ccCC-CEEEEEccChHHHHHHHHHHhc------CCcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328          162 LLKG-QTVGVIGAGRIGSAYARMMVEG------FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       162 ~l~g-ktvGIiG~G~IG~~vA~~l~~a------~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (342)
                      -+.| |+|+|||||.-|++=|..| +-      .|.+|.+ ..+..+....+..         ++..... ....+.+|.
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNL-rDSG~~~~sgv~V~VGLr~gs~S~~kA~~---------dGf~v~~-~~v~~v~EA  108 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNL-KDSLTEAKSDVVVKIGLRKGSNSFAEARA---------AGFSEEN-GTLGDMWET  108 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHHHHH---------TTCCGGG-TCEEEHHHH
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhC-hhhcccccCCceEEEEeCCCChhHHHHHH---------cCCccCC-CcccCHHHH
Confidence            3678 9999999999999999998 54      5677654 3332221111111         1111111 113478899


Q ss_pred             hhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       234 l~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .++||+|.+.+|...+ ..+. ++....||+|+.|. .|.|
T Consensus       109 v~~ADiVmiLlPDe~Q-~~vy-~~I~p~Lk~G~~L~-FaHG  146 (226)
T d1qmga2         109 ISGSDLVLLLISDSAQ-ADNY-EKVFSHMKPNSILG-LSHG  146 (226)
T ss_dssp             HHTCSEEEECSCHHHH-HHHH-HHHHHHSCTTCEEE-ESSS
T ss_pred             HhhCCEEEEecchHHH-HHHH-HHHHHhcCCCceee-ecch
Confidence            9999999999994433 3344 57889999999886 4454

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.87  E-value=6e-05  Score=63.34  Aligned_cols=143  Identities=13%  Similarity=0.211  Sum_probs=90.1

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhccCCCCCccccccCCHHHHhhcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      ++|+|||+|.+|..+|..+  +.|.+|++||.+++.- +....+.        ...... ..  .......+......++
T Consensus         1 MkI~ViGlG~vGl~~a~~~--a~g~~V~g~Din~~~v-~~l~~g~~p~~e~~l~~~~~~-~~--~~~~~~~~~~~~~~~~   74 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL--SLQNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKS-KQ--LSIKATLDSKAAYKEA   74 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH--TTTSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-SC--CCEEEESCHHHHHHHC
T ss_pred             CEEEEECCChhHHHHHHHH--HCCCcEEEEECCHHHH-HHHhhcccccchhhHHHHhhh-hh--hhhhccchhhhhhhcc
Confidence            4799999999999999765  4699999999987532 1111000        000000 00  1112234566677899


Q ss_pred             CEEEEcCCCCccccc-ccC-------HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCCCC-C-
Q 019328          238 DVISLHPVLDKTTYH-LIN-------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P-  307 (342)
Q Consensus       238 DiV~l~lplt~~t~~-li~-------~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~-  307 (342)
                      |++++++|...+... ..+       .+.+...+++.++|.-|.-.+-..+.+.+-+.+.++      +|.+|-... + 
T Consensus        75 ~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~------~~~PE~i~~G~a  148 (196)
T d1dlja2          75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRI------IFSPEFLRESKA  148 (196)
T ss_dssp             SEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCE------EECCCCCCTTST
T ss_pred             ccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhh------ccchhhcchhhh
Confidence            999999996554332 211       123334577889998888887778888887777654      356776543 2 


Q ss_pred             --CccCCCceEEcCC
Q 019328          308 --GLSEMKNAIVVPH  320 (342)
Q Consensus       308 --~L~~~~nvi~TPH  320 (342)
                        .+.+.|++++--+
T Consensus       149 i~d~~~p~riv~G~~  163 (196)
T d1dlja2         149 LYDNLYPSRIIVSCE  163 (196)
T ss_dssp             THHHHSCSCEEEECC
T ss_pred             HhhccCCCEEEEeCC
Confidence              4567788776554

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=1.1e-05  Score=65.53  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=64.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      .+|+|||.|.||..+|..| ...|.+|..++|........     .  ...............+..+.+..+|+|+++++
T Consensus         1 MkI~IiGaG~iG~~~a~~L-~~~G~~V~~~~r~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk   72 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPYCSV-----N--LVETDGSIFNESLTANDPDFLATSDLLLVTLK   72 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSEEEE-----E--EECTTSCEEEEEEEESCHHHHHTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCceEEEEcCHHHhhhh-----c--cccCCccccccccccchhhhhcccceEEEeec
Confidence            4799999999999999998 46799999999986532110     0  00000001111122345677789999999999


Q ss_pred             CCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      . .++... .+.....+++++.++.+..|
T Consensus        73 a-~~~~~~-~~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          73 A-WQVSDA-VKSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             G-GGHHHH-HHHHHTTSCTTSCEEEECSS
T ss_pred             c-cchHHH-HHhhccccCcccEEeeccCc
Confidence            3 444443 23445567788888887766

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=3.4e-05  Score=63.53  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             ccccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 g~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +.++.||++.|||-+. +|+.+|.+| ..-|++|+.++.+.                            .++.+.+++||
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL-~~~gatVt~~h~~t----------------------------~~l~~~~~~AD   82 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENAD   82 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCS
T ss_pred             CcccccceEEEEeccccccHHHHHHH-HHhhcccccccccc----------------------------chhHHHHhhhh
Confidence            3589999999999988 899999998 57899998876431                            36778889999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCc
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      +|+.++..    .++|..+.   +|+|+++||++--.
T Consensus        83 ivI~a~G~----p~~i~~~~---vk~g~vvIDvGi~~  112 (166)
T d1b0aa1          83 LLIVAVGK----PGFIPGDW---IKEGAIVIDVGINR  112 (166)
T ss_dssp             EEEECSCC----TTCBCTTT---SCTTCEEEECCCEE
T ss_pred             HhhhhccC----cccccccc---cCCCcEEEecCcee
Confidence            99999873    36676654   58999999997543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.80  E-value=0.00013  Score=63.29  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=78.6

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-hcCCE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sDi  239 (342)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++.|.+.... .......+            . ...+.++++ ..||+
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L-~~~Gakvv~~d~~~~~~-~~~~~~~g------------~-~~~~~~~~~~~~cDI   99 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAAV-SAAVAEEG------------A-DAVAPNAIYGVTCDI   99 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHHC------------C-EECCGGGTTTCCCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEeecccHHHH-HHHHHhcC------------C-cccCCcccccccccE
Confidence            479999999999999999999998 68999999999876532 22222111            1 123444443 57999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCc
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      ++-|-     ..+.|+++...+++- .+++-.+...+.+.++- +.|.+..|
T Consensus       100 l~PcA-----~~~~I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI  144 (230)
T d1leha1         100 FAPCA-----LGAVLNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGI  144 (230)
T ss_dssp             EEECS-----CSCCBSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTC
T ss_pred             ecccc-----cccccChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCc
Confidence            99883     467789999998874 47788888888887664 44554444

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.4e-05  Score=63.17  Aligned_cols=83  Identities=18%  Similarity=0.317  Sum_probs=65.0

Q ss_pred             ccccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 g~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +.+++||++.|||-+. +|+.+|.+| ..-|+.|..++.+.                            .++.+.+++||
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL-~~~gatVt~~~~~t----------------------------~~l~~~~~~aD   84 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGD   84 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCS
T ss_pred             CcccccceEEEEecCCccchHHHHHH-HhccCceEEEeccc----------------------------ccHHHHHhhcc
Confidence            4589999999999976 899999998 57799999887532                            35677889999


Q ss_pred             EEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCC
Q 019328          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       239 iV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd  278 (342)
                      +|+.++..    .+++..+   ..|+|+++|+++--.+.|
T Consensus        85 ivi~a~G~----~~~i~~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          85 ILVVATGQ----PEMVKGE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             EEEECCCC----TTCBCGG---GSCTTCEEEECCCBC---
T ss_pred             chhhcccc----ccccccc---cccCCCeEeccCcccccc
Confidence            99999883    4556655   458999999998655444

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=1.4e-05  Score=66.29  Aligned_cols=108  Identities=16%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             cccccCCCEEEEEccChH-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~I-G~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .|.++.||++.|||=++| |+++|.+| ..-|+.|..++.........   .........+...........+.+...++
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL-~~~gaTVt~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lk~~~~~a   98 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR---GESLKLNKHHVEDLGEYSEDLLKKCSLDS   98 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES---CCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHH-HHCCCEEEEecccccccccc---ccceeeeeeccccccccchhHHhhccccC
Confidence            467999999999999876 99999998 57899998887553211000   00000000000000000112367778899


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~  276 (342)
                      |+|+.++|-..   -.+..+   ..|+|+++||++-...
T Consensus        99 DIvIsavG~p~---~~i~~d---~ik~GavvIDvGi~~~  131 (171)
T d1edza1          99 DVVITGVPSEN---YKFPTE---YIKEGAVCINFACTKN  131 (171)
T ss_dssp             SEEEECCCCTT---CCBCTT---TSCTTEEEEECSSSCC
T ss_pred             CEEEEccCCCc---cccChh---hcccCceEeecccccc
Confidence            99999998432   113333   3589999999986643

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.66  E-value=0.00011  Score=67.32  Aligned_cols=98  Identities=19%  Similarity=0.284  Sum_probs=71.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -+++||||.|..++.-++.+..-++. +|.+|+|++... +.+.+.+.      ...+.......+++++++.||+|+.|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~-~~~~~~l~------~~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANLK------EYSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHT------TCTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHH-HHHHHhhh------hccCCCceecCCHHHHHhcCCceeec
Confidence            35899999999999988876556765 799999997653 23333221      12233445578999999999999998


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .+ ++.+.-+|..+   .+|||+.+..+|.
T Consensus       201 Ta-s~s~~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         201 TA-DKAYATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             CC-CSSEEEEECGG---GCCTTCEEEECSC
T ss_pred             cc-cCCCCcccchh---hcCCCCEEeeccc
Confidence            87 44556677654   4689999988864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.64  E-value=2e-05  Score=62.09  Aligned_cols=75  Identities=12%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-c-ccccCCHHHH-hhcCCEEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL  242 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~sDiV~l  242 (342)
                      |++.|+|+|.+|+.+|+.| ...|.+|+++|.+++.... .        +..+.... + ......|+++ +.+||.+++
T Consensus         1 k~~iIiG~G~~G~~la~~L-~~~g~~vvvid~d~~~~~~-~--------~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKVNA-Y--------ASYATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHHHH-T--------TTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEecCcHHHHHH-H--------HHhCCcceeeecccchhhhccCCccccEEEE
Confidence            6789999999999999998 6899999999998764221 1        11111000 0 1112345555 789999999


Q ss_pred             cCCCCccc
Q 019328          243 HPVLDKTT  250 (342)
Q Consensus       243 ~lplt~~t  250 (342)
                      ++|.+.++
T Consensus        71 ~~~~~~~~   78 (134)
T d2hmva1          71 AIGANIQA   78 (134)
T ss_dssp             CCCSCHHH
T ss_pred             EcCchHHh
Confidence            99965543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=8.8e-05  Score=60.79  Aligned_cols=96  Identities=17%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc-cccccCC-HHHHhhcCCEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASS-MDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-l~ell~~sDiV~  241 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|++|++.|+++.+....  .++|.       ... ......+ .+......|+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~a-k~~G~~vi~~~~~~~k~~~a--~~lGa-------~~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKREDA--MKMGA-------DHYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTHHHH--HHHTC-------SEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHh-hhccccccccccchhHHHHh--hccCC-------cEEeeccchHHHHHhhhcccceEE
Confidence            588999999999999999985 89999999999987653222  22221       000 0011112 234455679988


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .++....+   .--...++.++++..++.++
T Consensus        97 ~~~~~~~~---~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          97 VCASSLTD---IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             ECCSCSTT---CCTTTGGGGEEEEEEEEECC
T ss_pred             EEecCCcc---chHHHHHHHhhccceEEEec
Confidence            88663221   11234678889998998875

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=0.00042  Score=60.09  Aligned_cols=121  Identities=19%  Similarity=0.220  Sum_probs=79.6

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh----------hhHHHHHHhhhhhhhccCCCCCccccccCC
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      +.++.|+||.|=|+|++|+.+|+.|.+.+|++|++.+.+.          ......+.+..+      ...........+
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~------~~~~~~~~~~~~   99 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG------TVVTYPKGERIT   99 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSS------CSTTCSSCEEEC
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhc------ceeccccceeec
Confidence            3578999999999999999999997556899999765321          011112211111      111111112245


Q ss_pred             HHHHhh-cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEE
Q 019328          230 MDEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       230 l~ell~-~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga  294 (342)
                      .+++++ .||+++-|     ...+.|+++...+++-. +++-.+-+++- .++ .+.|.+..|.-+
T Consensus       100 ~~~~~~~~~DI~~Pc-----A~~~~I~~~~a~~l~~~-~I~e~AN~p~t-~~a-~~~L~~rgI~~~  157 (234)
T d1b26a1         100 NEELLELDVDILVPA-----ALEGAIHAGNAERIKAK-AVVEGANGPTT-PEA-DEILSRRGILVV  157 (234)
T ss_dssp             HHHHHTSCCSEEEEC-----SCTTCBCHHHHTTCCCS-EEECCSSSCBC-HHH-HHHHHHTTCEEE
T ss_pred             cccccccccceeecc-----hhcccccHHHHHHhhhc-eEeecCCCCCC-HHH-HHHHHHCCeEEe
Confidence            677776 89999877     34678999999999864 78888888874 444 466777665433

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.0002  Score=58.80  Aligned_cols=115  Identities=15%  Similarity=0.058  Sum_probs=73.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-HhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~sDi  239 (342)
                      .++.||+|.|+|.|..+++++-.| ...|++|..++|+.++. +...+.+..    ..  .   ....++++ ....+|+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al-~~~g~~i~I~nRt~~ka-~~l~~~~~~----~~--~---~~~~~~~~~~~~~~dl   82 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLFAH----TG--S---IQALSMDELEGHEFDL   82 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHTGG----GS--S---EEECCSGGGTTCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHh-cccceEEEeccchHHHH-HHHHHHHhh----cc--c---ccccccccccccccce
Confidence            478899999999999999999997 57899999999997643 222222211    00  0   11122322 2467999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      |+.|.|..-...  .....++.++++.+++++-=.+ ..+.-|..|-+.|
T Consensus        83 iIN~Tp~G~~~~--~~~~~~~~~~~~~~v~D~vY~P-~~T~ll~~A~~~G  129 (170)
T d1nyta1          83 IINATSSGISGD--IPAIPSSLIHPGIYCYDMFYQK-GKTPFLAWCEQRG  129 (170)
T ss_dssp             EEECCSCGGGTC--CCCCCGGGCCTTCEEEESCCCS-SCCHHHHHHHHTT
T ss_pred             eecccccCcccC--CCCCcHHHhccCcEEEEeecCC-CCCHHHHHHHHcC
Confidence            999999764322  1222345577888888875444 3445555555555

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.44  E-value=0.00068  Score=59.01  Aligned_cols=120  Identities=17%  Similarity=0.230  Sum_probs=75.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhh----hhhccCCCCCccccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYG----QFLKANGEQPVTWKR  226 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~  226 (342)
                      .+|.|+||.|=|+|++|+.+|+.| ...|++|++++....          +...+..+..+    ......    .+...
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L-~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~----~~~~~  101 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTK----DNAEF  101 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHT----SCCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhc----cCceE
Confidence            379999999999999999999998 689999997764310          00000000000    000000    00111


Q ss_pred             cCCHHHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       227 ~~~l~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      ..+.++++ ..||+++-|-     +.+.|+++...+++- .+++-.+-+++ ..++ .+.|.+..|.-
T Consensus       102 ~~~~~~i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~~  161 (242)
T d1v9la1         102 VKNPDAIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVVV  161 (242)
T ss_dssp             CSSTTGGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCEE
T ss_pred             eeCcchhccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeEE
Confidence            22344544 4799999885     466788888888875 48888888886 5555 37777776643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=7.6e-05  Score=57.38  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ...+.||||+|-|..|+.+|.. ++.+|.+++++|++++.
T Consensus         8 ~~~~~kigIlGgGQL~rMla~a-A~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIE-CQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHH-HHTTTCEEEEEESSTTC
T ss_pred             CCCCCEEEEEeCCHHHHHHHHH-HHHCCCEEEEEcCCCCC
Confidence            3456789999999999999998 48999999999998764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.38  E-value=0.00043  Score=55.61  Aligned_cols=105  Identities=14%  Similarity=0.192  Sum_probs=59.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      ..++|+|||.|.+|..+|..|+ +++.-++..||+...... ............   .........+.++ ++.||+|++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~-g~a~Dl~~a~~~---~~~~~~~~~d~~~-~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK-GDALDLEDAQAF---TAPKKIYSGEYSD-CKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHHHHHHGGGGG---SCCCEEEECCGGG-GTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhH-HHHHHHhccccc---cCCceEeeccHHH-hccccEEEE
Confidence            4679999999999999998875 245568999999875321 111111000000   1111122345554 589999999


Q ss_pred             cCCC--Cc-ccccc-c--C-------HhHHccCCCCcEEEecCC
Q 019328          243 HPVL--DK-TTYHL-I--N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lpl--t~-~t~~l-i--~-------~~~l~~mk~gailIN~sR  273 (342)
                      +...  .+ .++.- +  |       .+.+..-.|.+++|+++.
T Consensus        79 tag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            8532  22 12211 1  1       123555678999999874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.36  E-value=0.00011  Score=59.87  Aligned_cols=98  Identities=8%  Similarity=0.069  Sum_probs=60.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|+|.|||.|.||+.+|+.|+ .-|.+|+++||+.... ..+.+.++.....    .........+++.+...|+++.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~-~~g~~V~v~dr~~~~a-~~l~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLSAGVQHSTPI----SLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESCHHHH-HHHHTTCTTEEEE----ECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCEEEEEECChHHH-HHHHhcccccccc----cccccchhhhHhhhhccceeEee
Confidence            3799999999999999999984 6689999999998643 2222222110000    00011123466778899999998


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +|....  ..   ......+.+..+++++
T Consensus        75 ~~~~~~--~~---~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          75 IPYTFH--AT---VIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             SCGGGH--HH---HHHHHHHHTCEEECSS
T ss_pred             ccchhh--hH---HHHHHHhhccceeecc
Confidence            884321  11   1222334556666665

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00027  Score=58.68  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=72.2

Q ss_pred             ccccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH--HHHHHhhhhhhhccCCCCCccccccCCHHHHhhc
Q 019328          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       160 g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (342)
                      +.++.||++.|+|.|..|++++..|. ..|+ +++.++|+++..  ...+.+.++..... ......+....++.+.+..
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~-~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   90 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNENTDC-VVTVTDLADQQAFAEALAS   90 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSC-EEEEEETTCHHHHHHHHHT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHh-hcCCceEeeeccchHHHHHHHHHHHHHHhhcCc-ceEeeecccccchhhhhcc
Confidence            35799999999999999999999874 5677 788999986532  11111111110000 0000001112345667889


Q ss_pred             CCEEEEcCCCCccc---ccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          237 ADVISLHPVLDKTT---YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       237 sDiV~l~lplt~~t---~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +|+|+.+.|.....   ..++.  .+..++++.+++++.= ....+.=+-.|-+.|
T Consensus        91 ~diiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y-~p~~T~ll~~a~~~g  143 (182)
T d1vi2a1          91 ADILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVY-NPHMTKLLQQAQQAG  143 (182)
T ss_dssp             CSEEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCC-SSSSCHHHHHHHTTT
T ss_pred             cceeccccCCccccccchhhhh--HHHhhhcchhhHHhhc-CccccHHHHHHHHCc
Confidence            99999999965432   11111  2456788888888853 323343333443333

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.32  E-value=0.0028  Score=54.82  Aligned_cols=118  Identities=25%  Similarity=0.361  Sum_probs=75.2

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhccCCCCCccccccCCHH
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      .|.||||.|-|+|++|..+|+.|.+.+|++|++.+-+..          ....++....+      ...........+.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~------~~~~~~~~~~~~~~  102 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHG------SVKDFPGATNITNE  102 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHS------SSTTCTTSEEECHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhcc------ccccCCCCeeeccc
Confidence            599999999999999999999875578999987643210          11111111111      11111011123455


Q ss_pred             HHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       232 ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      +++ ..||+++-|-     +.+.|+++..+.++-. +++-.+-+++- .++ .+.|.+..|--
T Consensus       103 ~i~~~~~DIl~PcA-----~~~~I~~~~a~~i~ak-~I~e~AN~p~t-~ea-~~~L~~rgI~~  157 (239)
T d1gtma1         103 ELLELEVDVLAPAA-----IEEVITKKNADNIKAK-IVAEVANGPVT-PEA-DEILFEKGILQ  157 (239)
T ss_dssp             HHHHSCCSEEEECS-----CSCCBCTTGGGGCCCS-EEECCSSSCBC-HHH-HHHHHHTTCEE
T ss_pred             ccccccccEEeecc-----ccccccHHHHHhcccc-EEEecCCCCCC-HHH-HHHHHHCCCEE
Confidence            654 6899998884     3577888888888754 77888888874 444 46677665543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.29  E-value=0.00034  Score=54.75  Aligned_cols=92  Identities=12%  Similarity=0.180  Sum_probs=58.3

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC---HHHH-hhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~sDiV~  241 (342)
                      .+|-|+|+|.+|+.+|+.| ...|.+|++.|.+++.. +...+.++.        ..-.....+   |+++ ++++|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L-~~~g~~v~vid~d~~~~-~~~~~~~~~--------~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEIDA--------LVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHCSS--------EEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCCcceecCChhhh-hhhhhhhhh--------hhccCcccchhhhhhcChhhhhhhc
Confidence            4789999999999999998 68999999999987642 211111110        000001122   3333 68899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEE
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailI  269 (342)
                      ...+..  ..+++-....+.+.+..++.
T Consensus        71 ~~t~~d--~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          71 AVTGKE--EVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             ECCSCH--HHHHHHHHHHHHTTCCCEEE
T ss_pred             ccCCcH--HHHHHHHHHHHHcCCceEEE
Confidence            887743  34445455566677666654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.27  E-value=0.00063  Score=61.66  Aligned_cols=94  Identities=16%  Similarity=0.225  Sum_probs=67.5

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -+++||||.|..++.-++.+...+.. +|.+|+|+++.. +.+.+...    ...     .....+.++.+..||+|+.+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~-~~~~~~~~----~~~-----~~~~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSYCE----DRG-----ISASVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHH----HTT-----CCEEECCHHHHTSSSEEEEC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHH-HHHHHHHH----hcC-----CccccchhhhhccccEEEEe
Confidence            35899999999999999987656775 799999997643 33433221    111     11234667888999999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .|   ++.-+|..+   .+|||+.++.+|..
T Consensus       195 T~---s~~P~~~~~---~l~~G~hv~~iGs~  219 (320)
T d1omoa_         195 TP---SRKPVVKAE---WVEEGTHINAIGAD  219 (320)
T ss_dssp             CC---CSSCCBCGG---GCCTTCEEEECSCC
T ss_pred             cc---Ccccccchh---hcCCCCeEeecCCc
Confidence            76   556677654   47999999999753

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.25  E-value=0.00079  Score=56.10  Aligned_cols=83  Identities=14%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             ccccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 g~~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      |.+|+||++-|.| -|.||+.+|+.| ...|++|+..+|+.++.. ...+.+...... ...........++++++.+.|
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~l-a~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKAQ-AAADSVNKRFKV-NVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHH-HHHHHHHHHHTC-CCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHH-HhhccchhhcccchHHHH-HHHHHHHhccch-hhhhhhcccHHHHHHHhcCcC
Confidence            5689999999999 699999999998 588999999999975422 111111110000 000011111235667788888


Q ss_pred             EEEEcCC
Q 019328          239 VISLHPV  245 (342)
Q Consensus       239 iV~l~lp  245 (342)
                      +|+.+.+
T Consensus        95 ilin~Ag  101 (191)
T d1luaa1          95 FVFTAGA  101 (191)
T ss_dssp             EEEECCC
T ss_pred             eeeecCc
Confidence            8887754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.25  E-value=0.0012  Score=53.62  Aligned_cols=110  Identities=12%  Similarity=0.160  Sum_probs=62.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      ..+..++|+|||.|++|..+|-.|+ +++--++..||.+.+.....-.|-...... ...  .......+ .+-++.||+
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~-~~~--~~~~~~~d-~~~~~~adi   91 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLF-LQT--PKIVADKD-YSVTANSKI   91 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGG-CCC--SEEEECSS-GGGGTTCSE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccc-cCC--CeEEeccc-hhhcccccE
Confidence            3566789999999999999999874 234448999999865432111111000000 000  01112233 345789999


Q ss_pred             EEEcC--CCCc-cccccc---CH-------hHHccCCCCcEEEecCCC
Q 019328          240 ISLHP--VLDK-TTYHLI---NK-------ERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~l--plt~-~t~~li---~~-------~~l~~mk~gailIN~sRG  274 (342)
                      |+++.  |..+ +||--+   |.       ..+....|++++|+++.-
T Consensus        92 VVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          92 VVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             EEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            99974  3333 343222   11       233444788999998753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.25  E-value=0.0011  Score=53.46  Aligned_cols=108  Identities=15%  Similarity=0.228  Sum_probs=62.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      +-++|+|||.|.+|+.+|..|+ ..+ .++..+|.++......-.+ ......... .........+.++.++.||+|++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~-~~~~~el~L~D~~~~~~~g~a~D-l~~~~~~~~-~~~~~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALD-LSHVTSVVD-TNVSVRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHH-HHHHHHHTT-CCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHH-hCCCceEEEEEeccccchhHHHH-HhhhccccC-CeeEEeccCchhhhhcCCCeEEE
Confidence            4579999999999999998763 333 3899999876532111111 000000000 01111223466788999999999


Q ss_pred             cCCC--Cc------cccccc---CH-------hHHccCCCCcEEEecCCC
Q 019328          243 HPVL--DK------TTYHLI---NK-------ERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~lpl--t~------~t~~li---~~-------~~l~~mk~gailIN~sRG  274 (342)
                      +...  .+      .||.-+   |.       +.+....|.+++++++.-
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            8632  22      133222   11       234455789999998653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.23  E-value=0.00054  Score=54.99  Aligned_cols=105  Identities=18%  Similarity=0.205  Sum_probs=59.7

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      |+|+|||.|.+|..+|-.|+ +++.-++..||.........-.+ ......... ... .....+. +.++.||+|+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~D-l~~a~~~~~-~~~-~~~~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID-FQDAMANLE-AHG-NIVINDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHHHGGGSS-SCC-EEEESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHh-hhccccccC-Ccc-ceeccCH-HHhccccEEEEec
Confidence            79999999999999998764 34555899999987542111111 110000000 011 1122333 4579999999986


Q ss_pred             CCCc-------cccc-cc--C-------HhHHccCCCCcEEEecCCC
Q 019328          245 VLDK-------TTYH-LI--N-------KERLATMKKEAILVNCSRG  274 (342)
Q Consensus       245 plt~-------~t~~-li--~-------~~~l~~mk~gailIN~sRG  274 (342)
                      ....       .+|. ++  |       .+.+....|++++|+++.-
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            5321       1222 11  1       1234556789999998653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00016  Score=51.83  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      |||||+|-|..|+.++.. ++.+|.+++++|++.+.
T Consensus         2 k~vgIlG~GQLgrMl~~A-a~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQA-GEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHH-HGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCEEEEEcCCCCC
Confidence            799999999999999998 58999999999997643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00078  Score=54.89  Aligned_cols=95  Identities=18%  Similarity=0.153  Sum_probs=63.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh--------
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--------  234 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  234 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++.+...  ..+++       ..........+..+..        
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~~~rl~~--a~~~G-------a~~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLSK--AKEIG-------ADLVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHHH--HHHTT-------CSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCCHHHHHH--HHHhC-------CcccccccccccccccccccccCC
Confidence            467899999999999999985 79999 89999998765422  12222       1111111123444332        


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ...|+|+-++.. +.+    -+..++.+++|..++.++-
T Consensus        96 ~g~Dvvid~~G~-~~~----~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTGA-EAS----IQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEeccCC-chh----HHHHHHHhcCCCEEEEEec
Confidence            257999998873 322    2457788899988888764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.18  E-value=0.0002  Score=58.90  Aligned_cols=65  Identities=15%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|||+|+|.||+..++.+.+.-++++. ++|++....                 .........+.++++.+.|+|++|.
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----------------TKTPVFDVADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----------------SSSCEEEGGGGGGTTTTCSEEEECS
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc-----------------cccccccchhhhhhccccceEEEeC
Confidence            4799999999999999997433367766 556654321                 1112233457778889999999999


Q ss_pred             CCC
Q 019328          245 VLD  247 (342)
Q Consensus       245 plt  247 (342)
                      |..
T Consensus        67 p~~   69 (170)
T d1f06a1          67 GSA   69 (170)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            944

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00061  Score=55.25  Aligned_cols=68  Identities=16%  Similarity=0.273  Sum_probs=46.8

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      .+|||||+|.+|+. ....+...-+.++. ++|++.... ..+.+.++            .....++++++++.|+|+++
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~-~~~~~~~~------------~~~~~~~~~l~~~~D~V~I~   68 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESWR------------IPYADSLSSLAASCDAVFVH   68 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHHT------------CCBCSSHHHHHTTCSEEEEC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhh-hhhhhccc------------ccccccchhhhhhccccccc
Confidence            37999999999986 45655333477765 678876542 22222221            22356899999999999999


Q ss_pred             CCC
Q 019328          244 PVL  246 (342)
Q Consensus       244 lpl  246 (342)
                      +|.
T Consensus        69 tp~   71 (164)
T d1tlta1          69 SST   71 (164)
T ss_dssp             SCT
T ss_pred             ccc
Confidence            993

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00056  Score=54.41  Aligned_cols=103  Identities=17%  Similarity=0.261  Sum_probs=59.6

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|.+|..+|..++ +.+.-++..+|.+.........+-... .....  .. ... .+..+.++.||+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~-~~~~~--~~-~~~-~~~~~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG-TPFTR--RA-NIY-AGDYADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH-GGGSC--CC-EEE-ECCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccc-ccccc--cc-ccc-CCcHHHhcCCCEEEEec
Confidence            37999999999999998654 466679999998865422111111100 00000  11 112 23345589999999985


Q ss_pred             C--CCc-ccc-ccc--C-------HhHHccCCCCcEEEecCC
Q 019328          245 V--LDK-TTY-HLI--N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 p--lt~-~t~-~li--~-------~~~l~~mk~gailIN~sR  273 (342)
                      -  ..+ +++ .++  |       .+.+....|++++++++.
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            3  222 122 111  1       134455678999999874

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.13  E-value=0.0014  Score=58.41  Aligned_cols=117  Identities=16%  Similarity=0.204  Sum_probs=75.5

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh----------hhHHHHHHhhhhhhhccCCCCCccccccCCH
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .+|.||||.|=|+|++|+.+|+.| ...|++|++++.+.          .+....+.+..+.      ....... ..+.
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L-~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~------~~~~~~~-~~~~  103 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYL-HRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGT------ILGFPKA-KIYE  103 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSS------STTCTTS-CBCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEccchhhccccccchHHHHHHHHHcCC------eeccccc-ccCC
Confidence            479999999999999999999998 68999998775321          1122222221111      1111011 1122


Q ss_pred             HHHh-hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccE
Q 019328          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       231 ~ell-~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g  293 (342)
                      ++++ ..||+++-|     .+.+.|+.+...+++-. +++--+.|++ ..+| .+.|.+..|.-
T Consensus       104 ~~~~~~~~DIliPa-----A~~~~I~~~~a~~l~ak-~I~EgAN~P~-t~eA-~~~L~~~gI~v  159 (293)
T d1hwxa1         104 GSILEVDCDILIPA-----ASEKQLTKSNAPRVKAK-IIAEGANGPT-TPQA-DKIFLERNIMV  159 (293)
T ss_dssp             SCGGGCCCSEEEEC-----SSSSCBCTTTGGGCCCS-EEECCSSSCB-CHHH-HHHHHHTTCEE
T ss_pred             cccccCCccEEeec-----cccccccHHHHHHHhhC-EEeccCCCCC-Ccch-HHHHHHCCCEE
Confidence            3344 489999877     45678888888888754 8888889996 4444 36676665543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.08  E-value=0.00062  Score=55.32  Aligned_cols=93  Identities=15%  Similarity=0.204  Sum_probs=56.4

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcC-CcEEEE-EcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh-----hcC
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~s  237 (342)
                      .++||||.|.||+. +.+.+ +.+ ..++.+ .+++.......+.+.++          .. ....++++++     .+.
T Consensus         5 irvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~~~~~~~a~~~~----------i~-~~~~~~d~l~~~~~~~~i   72 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRMG----------VT-TTYAGVEGLIKLPEFADI   72 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTTCHHHHHHHHTT----------CC-EESSHHHHHHHSGGGGGE
T ss_pred             cEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchhccchhhhhhcC----------Cc-ccccceeeeeeccccccc
Confidence            47999999999986 56766 444 456554 57765432222222221          11 1223455554     467


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+.++|......+   +..++..+.|.++|+-+.
T Consensus        73 DiVf~ATpag~h~~~---~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          73 DFVFDATSASAHVQN---EALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             EEEEECSCHHHHHHH---HHHHHHHCTTCEEEECST
T ss_pred             CEEEEcCCchhHHHh---HHHHHHHHcCCEEEEccc
Confidence            899999984333322   345666799999999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.08  E-value=0.00069  Score=55.03  Aligned_cols=96  Identities=14%  Similarity=0.079  Sum_probs=59.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccc-cccCCHHHH---h-----
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEV---L-----  234 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~el---l-----  234 (342)
                      .|.+|.|+|.|.||...++.+ +.+|++|+++|+++.+....  .+++...      .... ....+.++.   +     
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~~~r~~~a--~~~ga~~------~~~~~~~~~~~~~~~~~~~~~~g   96 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRLEVA--KNCGADV------TLVVDPAKEEESSIIERIRSAIG   96 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHH--HHTTCSE------EEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCEEEEEcccccchhhHhhH-hhhcccccccchHHHHHHHH--HHcCCcE------EEeccccccccchhhhhhhcccc
Confidence            467999999999999999985 89999999999987653211  1121100      0000 011222222   2     


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ...|+|+-+.. .+.+    -...++.++++..++.++-
T Consensus        97 ~g~D~vid~~g-~~~~----~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          97 DLPNVTIDCSG-NEKC----ITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             SCCSEEEECSC-CHHH----HHHHHHHSCTTCEEEECSC
T ss_pred             cCCceeeecCC-ChHH----HHHHHHHHhcCCceEEEec
Confidence            24788888776 2322    2345677888888888764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.03  E-value=0.00051  Score=56.61  Aligned_cols=108  Identities=14%  Similarity=0.117  Sum_probs=66.4

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+++||++.|+|.|..+++++..| ...| +|+.++|+.++. +...+.+....   ...........+++..+..+|++
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL-~~~~-~i~I~nR~~~ka-~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dli   87 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAEKL---NKKFGEEVKFSGLDVDLDGVDII   87 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHHHH---TCCHHHHEEEECTTCCCTTCCEE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-cccc-ceeeehhhhhHH-HHHHHHHHHhh---chhhhhhhhhhhhhhccchhhhh
Confidence            469999999999999999999987 5777 999999997643 22222221100   00000011234566677889999


Q ss_pred             EEcCCCCccccc-ccCHhHHccCCCCcEEEecCCC
Q 019328          241 SLHPVLDKTTYH-LINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       241 ~l~lplt~~t~~-li~~~~l~~mk~gailIN~sRG  274 (342)
                      +.+.|....... .-..-.+..++++.+++++.=-
T Consensus        88 In~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~  122 (177)
T d1nvta1          88 INATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYN  122 (177)
T ss_dssp             EECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred             ccCCcccccccccccchhhhhccCcccceeeecCC
Confidence            999986432111 1011124456677788777543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.00058  Score=56.30  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=33.6

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~  201 (342)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++.+
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~a-k~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHH
T ss_pred             CCCCEEEEECCCccchhheecc-ccccccccccccccccc
Confidence            3589999999999999999985 89998 89999998765

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.02  E-value=0.0006  Score=56.58  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhc--cCCC---CCccccccCCHHHHhhcCCEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLK--ANGE---QPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~l~ell~~sDiV  240 (342)
                      +|||.|||+||+.++|.+...=+++|.+. |+.+........ .++....  ....   ...+.....++.++++++|+|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH-RRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH-HTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhc-ccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            79999999999999999754446888775 554433222111 1110000  0000   000011134678888899999


Q ss_pred             EEcCCC
Q 019328          241 SLHPVL  246 (342)
Q Consensus       241 ~l~lpl  246 (342)
                      +-|.|.
T Consensus        82 iecTG~   87 (178)
T d1b7go1          82 VDTTPN   87 (178)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999884

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.01  E-value=0.0012  Score=54.33  Aligned_cols=123  Identities=16%  Similarity=0.141  Sum_probs=69.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV~l~  243 (342)
                      ++||||+|.||+..++.+...-+++|. ++|++++.. ..+...++        .+.....+.+++++++  +.|+|+++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATANN--------YPESTKIHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHTT--------CCTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccc-ccchhccc--------cccceeecCcHHHhhhccccceeeec
Confidence            799999999999999987433377877 568876532 22222221        1111223578999984  56899999


Q ss_pred             CCCCcccccccCHhHHccCCCCc-EEEecC-CCccCCHHHHHHHHHcCCccEEEeecCCCCC
Q 019328          244 PVLDKTTYHLINKERLATMKKEA-ILVNCS-RGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~ga-ilIN~s-RG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  303 (342)
                      .|.  .++--+   ....++.|. +++.-- --.+-+.+.|.+..++.++.-..-=.+...|
T Consensus        74 tp~--~~h~~~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r~~~  130 (184)
T d1ydwa1          74 LPT--SLHVEW---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQ  130 (184)
T ss_dssp             CCG--GGHHHH---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGCH
T ss_pred             ccc--hhhcch---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEEeeecCh
Confidence            983  333222   233344443 333211 1122344567788777666544332333334

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.00  E-value=0.0011  Score=53.13  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=60.6

Q ss_pred             cCCCEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      -.+++|+|||.|.+|..+|..|+ +++.-++..||..+.... ........   .............+-.+.++.||+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~-g~a~Dl~~---~~~~~~~~~~~~~~d~~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAI-GDAMDFNH---GKVFAPKPVDIWHGDYDDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHHHHHHH---HTTSSSSCCEEEECCGGGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccccc-chhccHhh---CccccCCCeEEEECCHHHhccceeEE
Confidence            45789999999999999998864 345558999998865421 11111110   00111111111122346678999999


Q ss_pred             EcCCC--Cc-cccc-cc--CH-------hHHccCCCCcEEEecCC
Q 019328          242 LHPVL--DK-TTYH-LI--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lpl--t~-~t~~-li--~~-------~~l~~mk~gailIN~sR  273 (342)
                      ++.-.  .+ +++. ++  |.       +.+.+..|.+++|+++.
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            87442  22 1221 11  11       23444568899999854

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.99  E-value=0.0011  Score=53.88  Aligned_cols=110  Identities=15%  Similarity=0.190  Sum_probs=64.0

Q ss_pred             CEEEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-cCCEEEEc
Q 019328          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sDiV~l~  243 (342)
                      .++||||+|.+|+. ....+.+.-+.++.++|+++... ..+.+.++       ..    ..+.+.+++++ +.|+|+++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~-------~~----~~~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRYR-------VS----ATCTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHTT-------CC----CCCSSTTGGGGGCCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHhcc-------cc----cccccHHHhcccccceeccc
Confidence            37999999999976 45665333467888999987542 23322221       10    12456777775 56999999


Q ss_pred             CCCCcccccccCHhHHccCCCCcEEEecC-CCccCCHHHHHHHHHcCCc
Q 019328          244 PVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       244 lplt~~t~~li~~~~l~~mk~gailIN~s-RG~~vd~~aL~~aL~~g~i  291 (342)
                      .|  +.++--+-...++.=|  .+|+.-= --.+-+.+.|.++.++.++
T Consensus        70 tp--~~~H~~~~~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          70 AA--TDVHSTLAAFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             SC--GGGHHHHHHHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             cc--cccccccccccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            99  4444333333443222  2555421 1222345677777776554

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.99  E-value=0.0018  Score=51.43  Aligned_cols=105  Identities=18%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|.+|..+|..|+. ++.-++..||...........+.... ..... ...... ..+..+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~-~~~~~-~~~~i~-~~~~~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES-GPVGL-FDTKVT-GSNDYADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTT-HHHHT-CCCEEE-EESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcc-cchhc-ccceEE-ecCCHHHhcCCeEEEEEE
Confidence            379999999999999988742 33358999998865422111111000 00000 011111 123456679999999984


Q ss_pred             --CCCcc-ccccc---C-------HhHHccCCCCcEEEecCC
Q 019328          245 --VLDKT-TYHLI---N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 --plt~~-t~~li---~-------~~~l~~mk~gailIN~sR  273 (342)
                        |..+. ++.-.   |       .+.+....|++++++++.
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence              44442 22211   1       123444568999999865

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.94  E-value=0.00092  Score=58.09  Aligned_cols=101  Identities=15%  Similarity=0.074  Sum_probs=71.2

Q ss_pred             cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCCCC
Q 019328          225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (342)
Q Consensus       225 ~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~  304 (342)
                      ....++.|++++||+|++|+|..+.+..++ ++....+++|++++++|.........+.+.+++..+.-     ...=|.
T Consensus       130 ~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v-----i~~hp~  203 (242)
T d2b0ja2         130 KVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI-----TSYHPG  203 (242)
T ss_dssp             EEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE-----EECBCS
T ss_pred             EEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE-----ECCCcc
Confidence            345799999999999999999776677777 67889999999999999999888888888888765542     222232


Q ss_pred             CCCCccCCCceEEcCCCCCCcHHHHHHHHHH
Q 019328          305 MKPGLSEMKNAIVVPHIASASKWTREGMATL  335 (342)
Q Consensus       305 ~~~~L~~~~nvi~TPHia~~t~~~~~~~~~~  335 (342)
                      . .|-..-..+++.   ++.+.|..+.....
T Consensus       204 a-~pe~~g~~li~~---~~aseE~iekv~el  230 (242)
T d2b0ja2         204 C-VPEMKGQVYIAE---GYASEEAVNKLYEI  230 (242)
T ss_dssp             S-CTTTCCCEEEEE---SSSCHHHHHHHHHH
T ss_pred             C-cCccccceEEec---CCCCHHHHHHHHHH
Confidence            1 121122344443   34677776665543

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.94  E-value=0.0009  Score=52.73  Aligned_cols=101  Identities=20%  Similarity=0.168  Sum_probs=65.3

Q ss_pred             ccCCCEEEEEccC----------hHHHHHHHHHHhcCCcEEEEEcCChhhHHHH-HHhhhhhhhccCCCCCccccccCCH
Q 019328          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEK-FVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       162 ~l~gktvGIiG~G----------~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .+.+++|||+|+-          .-...+++.| ...|++|.+|||........ ....+   . .............++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L-~~~g~~V~~~DP~v~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~   84 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEY---I-ESKIPHVSSLLVSDL   84 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHH---H-HHTSHHHHTTBCSCH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHH-hhhhccccccCCCCCHHHHhhhhhhh---h-hhccccccceeehhh
Confidence            4678999999983          5678889987 68899999999975431000 00000   0 000000112235799


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       231 ~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      +++++.||+|+++.+-. +-     .+....++++.+++++ ||
T Consensus        85 ~e~i~~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~-~~  121 (136)
T d1mv8a3          85 DEVVASSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL-VG  121 (136)
T ss_dssp             HHHHHHCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES-SS
T ss_pred             hhhhhhceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC-CC
Confidence            99999999999998843 22     3445667788899997 44

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.75  E-value=0.00077  Score=55.38  Aligned_cols=77  Identities=14%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .++.||++.|+|.|..+++++..|. .-+.+|+.++|+.++. +...+.+...    .  ..  ......+..+..+|+|
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~-~~~~~i~I~nR~~~~a-~~l~~~~~~~----~--~~--~~~~~~~~~~~~~dii   83 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSKT-KELAERFQPY----G--NI--QAVSMDSIPLQTYDLV   83 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHHH-HHHHHHHGGG----S--CE--EEEEGGGCCCSCCSEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHc-ccCceeeeccchHHHH-HHHHHHHhhc----c--cc--chhhhcccccccccee
Confidence            3688999999999999999999874 5668999999997542 3332322210    0  00  0011111235789999


Q ss_pred             EEcCCCC
Q 019328          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~lplt  247 (342)
                      +.+.|..
T Consensus        84 IN~tp~g   90 (171)
T d1p77a1          84 INATSAG   90 (171)
T ss_dssp             EECCCC-
T ss_pred             eeccccc
Confidence            9999965

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.001  Score=54.10  Aligned_cols=92  Identities=18%  Similarity=0.294  Sum_probs=59.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCC---HHHHhhcCCEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~sDiV  240 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+++++.+++.++..  +..+++.       ... . ...+   ........|++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qla-k~~Ga~~i~~~~~~~~~~--~a~~lGa-------d~~-i-~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKRE--AAKALGA-------DEV-V-NSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--HHHHHTC-------SEE-E-ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHh-hcccccchhhccchhHHH--HHhccCC-------cEE-E-ECchhhHHHHhcCCCcee
Confidence            488999999999999999985 899999999998876532  2222221       000 0 0111   12233457888


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +-++.... +    -...++.++++..++.++
T Consensus        98 id~~g~~~-~----~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          98 LNTVAAPH-N----LDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EECCSSCC-C----HHHHHTTEEEEEEEEECC
T ss_pred             eeeeecch-h----HHHHHHHHhcCCEEEEec
Confidence            88876332 2    134567778887777764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.70  E-value=0.0047  Score=48.90  Aligned_cols=103  Identities=17%  Similarity=0.276  Sum_probs=56.5

Q ss_pred             CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhh-hhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      ++|+|||.|.+|..+|-.|+. .+ .+++.+|..+........+- ....... .  ........+.++ ++.||+|+++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l-~dl~l~D~~~~~~~~~~~Dl~~~~~~~~-~--~~~i~~~~d~~~-~~~advvvit   76 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEG-F--DVRVTGTNNYAD-TANSDVIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSSSSHHHHHHHHHHTTHHHHT-C--CCCEEEESCGGG-GTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCc-ceEEEEeeccccchhHHHHhhccccccC-C--CCEEEecCcHHH-hcCCCEEEEe
Confidence            589999999999999987653 33 48999998765422211111 1100000 0  011112234454 5889999999


Q ss_pred             CC--CCc-ccc-ccc--CH-------hHHccCCCCcEEEecCC
Q 019328          244 PV--LDK-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 lp--lt~-~t~-~li--~~-------~~l~~mk~gailIN~sR  273 (342)
                      ..  ..+ +++ .++  |.       +.+.+..|.+++++++.
T Consensus        77 ag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          77 SGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             CSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             eeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence            74  222 222 222  11       23445567889998764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00036  Score=55.92  Aligned_cols=44  Identities=16%  Similarity=0.190  Sum_probs=37.4

Q ss_pred             cccccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHH
Q 019328          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL  203 (342)
Q Consensus       159 ~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~  203 (342)
                      ...+|.||++.|||-|.+|.+-|+.| ..+|++|.+++|...+..
T Consensus         7 l~~~l~gkrvLViGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l   50 (150)
T d1kyqa1           7 LAHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLHKSI   50 (150)
T ss_dssp             EEECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEECTTH
T ss_pred             hheeeCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCHHH
Confidence            34679999999999999999999997 688999999987655433

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.67  E-value=0.0018  Score=53.03  Aligned_cols=94  Identities=17%  Similarity=0.165  Sum_probs=59.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH-Hhh-----c
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLR-----E  236 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~-----~  236 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++.++....  ..++.       ...-.....++.+ +.+     .
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~a-k~~Ga~~Vi~~d~~~~r~~~a--~~lGa-------~~~i~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGA-KLRGAGRIIGVGSRPICVEAA--KFYGA-------TDILNYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSCEEEECCCHHHHHHH--HHHTC-------SEEECGGGSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEEcCCcchhhhhhhh-hcccccccccccchhhhHHHH--HhhCc-------cccccccchhHHHHHHHHhhccC
Confidence            477999999999999999985 89998 799999987653222  22221       0000011123332 222     2


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .|+|+-++.... +    -+..++.++|+..++-++
T Consensus        97 ~D~vid~~g~~~-~----~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          97 VDRVIMAGGGSE-T----LSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEEEECSSCTT-H----HHHHHHHEEEEEEEEECC
T ss_pred             cceEEEccCCHH-H----HHHHHHHHhcCCEEEEEe
Confidence            688888876332 1    144567778888888765

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.62  E-value=0.0053  Score=50.07  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             CEEEEEccChHH--HHHHHHHH--hcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          166 QTVGVIGAGRIG--SAYARMMV--EGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG--~~vA~~l~--~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+|.|||.|..|  ..++..++  ..|. .++..+|.++.....+..+............+.......+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            379999999776  44555432  1233 489999998754222211111100011111222333457888999999999


Q ss_pred             EEcCCC
Q 019328          241 SLHPVL  246 (342)
Q Consensus       241 ~l~lpl  246 (342)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999863

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.58  E-value=0.0024  Score=50.77  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      ++|+|||.|.+|..+|-.++ +.+.-++..||....... .....    +.+.............-.+.++.||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~-g~a~D----l~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAI-GEAMD----INHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CC-HHHHH----HTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccc-eeeee----eccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            47999999999999998764 345558999998765321 11111    1111110000111122345578999999984


Q ss_pred             --CCCc-cccc-cc--C-------HhHHccCCCCcEEEecCC
Q 019328          245 --VLDK-TTYH-LI--N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 --plt~-~t~~-li--~-------~~~l~~mk~gailIN~sR  273 (342)
                        |..+ +++. ++  |       .+.+....|++++|+++.
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence              3222 1221 11  1       123445578899999876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.57  E-value=0.006  Score=48.45  Aligned_cols=100  Identities=18%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCC--ccccccCCHHHHhhcCCEE
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~sDiV  240 (342)
                      .+|+||| .|.+|..+|..|+ ..|  -++..+|....+. +.. +     +.......  .......+..+.++.||+|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~-~~~~~~elvLiDi~~~~~-~a~-D-----l~~~~~~~~~~~~~~~~~~~~~~~~aDiv   72 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPG-VAA-D-----LSHIETRATVKGYLGPEQLPDCLKGCDVV   72 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHH-HHH-H-----HTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             CeEEEECCCChHHHHHHHHHH-hCCccceEEEEeccccch-hhH-H-----HhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence            4799999 5999999999874 444  3788999865432 111 1     11111111  1112235667888999999


Q ss_pred             EEcCC--CCc-ccccc-c--CH-------hHHccCCCCcEEEecCC
Q 019328          241 SLHPV--LDK-TTYHL-I--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~lp--lt~-~t~~l-i--~~-------~~l~~mk~gailIN~sR  273 (342)
                      +++.-  ..+ ++|.- +  |.       +.+....|.++++.++.
T Consensus        73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            98843  333 23321 1  11       23344478999999865

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.0041  Score=51.00  Aligned_cols=67  Identities=16%  Similarity=0.275  Sum_probs=45.1

Q ss_pred             CEEEEEccChHHHHH-HHHHHhcCC--cEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCE
Q 019328          166 QTVGVIGAGRIGSAY-ARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       166 ktvGIiG~G~IG~~v-A~~l~~a~g--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDi  239 (342)
                      .++||||+|.+|+.+ +..+ +.++  .+|. ++|+++... ..+.+.++.           ...+.+++++++  ..|+
T Consensus         4 irigiIG~G~~g~~~h~~~l-~~~~~~~~i~~v~d~~~~~~-~~~~~~~~~-----------~~~~~~~~ell~~~~id~   70 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMVGN-----------PAVFDSYEELLESGLVDA   70 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHHSS-----------CEEESCHHHHHHSSCCSE
T ss_pred             cEEEEEcCCHHHHHHHHHHH-HhCCCCeEEEEEEeccHhhh-hhhhccccc-----------cceeeeeeccccccccce
Confidence            479999999999874 6665 4443  5766 678876542 333333320           123578999986  4788


Q ss_pred             EEEcCC
Q 019328          240 ISLHPV  245 (342)
Q Consensus       240 V~l~lp  245 (342)
                      |+++.|
T Consensus        71 v~I~tp   76 (181)
T d1zh8a1          71 VDLTLP   76 (181)
T ss_dssp             EEECCC
T ss_pred             eecccc
Confidence            999998

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.49  E-value=0.0014  Score=52.96  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=33.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.|+++.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhH
Confidence            478999999999999999985 8999999999998765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.47  E-value=0.0013  Score=53.13  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CEEEEE-ccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       166 ktvGIi-G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .||+|| |.|.||+.+|++| ...|.+|..++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~l-a~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            479999 8999999999998 4789999999998764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.46  E-value=0.0021  Score=52.81  Aligned_cols=80  Identities=20%  Similarity=0.191  Sum_probs=43.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhccCCCCCc------cccccCCHHHHhhcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV------TWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ell~~sD  238 (342)
                      ++|||-|||+|||.+.|.+...-.+++.+. |+.+..... ....++...........      +.....+..++++++|
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD   80 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEAR-MALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHH-HHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHH-HHHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence            589999999999999998643335777655 444332211 11111100000000000      0011235677788999


Q ss_pred             EEEEcCCC
Q 019328          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~lpl  246 (342)
                      +|+-|.|.
T Consensus        81 vViEcTG~   88 (171)
T d1cf2o1          81 IVIDCTPE   88 (171)
T ss_dssp             EEEECCST
T ss_pred             EEEEccCC
Confidence            99999884

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.46  E-value=0.0067  Score=48.53  Aligned_cols=104  Identities=15%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             CCEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHh--hhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVT--AYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ..+|+|||.|.+|..+|..+.. .+ .++..||..+......-.+  ....+...    .... ...+..+.++.||+|+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~----~~~v-~~~~~~~~~~~advvv   76 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYS----NCKV-SGSNTYDDLAGADVVI   76 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTC----CCCE-EEECCGGGGTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCC----CcEE-EecccccccCCCcEEE
Confidence            3689999999999999987642 33 4899999876432111111  01000000    0011 1123345678999999


Q ss_pred             EcCCCC--cc-c-----cc-cc--CH-------hHHccCCCCcEEEecCCC
Q 019328          242 LHPVLD--KT-T-----YH-LI--NK-------ERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~lplt--~~-t-----~~-li--~~-------~~l~~mk~gailIN~sRG  274 (342)
                      ++.-..  +. +     |- ++  |.       +.++...|++++++++.-
T Consensus        77 itag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          77 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             EecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            985422  11 1     21 11  21       124445689999998764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0033  Score=52.28  Aligned_cols=74  Identities=9%  Similarity=0.059  Sum_probs=49.9

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEE
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV  240 (342)
                      ..|+|.|+| .|.||+.++++| ..-|.+|.+++|++.+....         ...+..-.  ......++++++..+|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~L-l~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHhcCCCEE
Confidence            468999999 699999999987 46799999999987642110         00000000  011224567889999999


Q ss_pred             EEcCCCC
Q 019328          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~lplt  247 (342)
                      +.++...
T Consensus        72 i~~~g~~   78 (205)
T d1hdoa_          72 IVLLGTR   78 (205)
T ss_dssp             EECCCCT
T ss_pred             EEEeccC
Confidence            9887643

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.38  E-value=0.0042  Score=50.92  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhccCCCC------CccccccCCHHHHhhcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQ------PVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~ell~~sD  238 (342)
                      .+|||.|||+||+.+.|.+...-.+++.+. |+.+..... +...++...-.....      ..+.....++.++++.+|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAY-RAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHH-HHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHH-HhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            489999999999999998744445777654 554433211 111111000000000      000111246777788899


Q ss_pred             EEEEcCCC
Q 019328          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~lpl  246 (342)
                      +|+=|.|.
T Consensus        82 vViEcTG~   89 (172)
T d2czca2          82 IIVDATPG   89 (172)
T ss_dssp             EEEECCST
T ss_pred             EEEECCCC
Confidence            99888773

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.36  E-value=0.003  Score=55.20  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEc--------CChh--hHHHHHHhhhhhhhccCCCCC----ccccc
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTAYGQFLKANGEQP----VTWKR  226 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d--------~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~  226 (342)
                      .+|.|+||.|=|+|++|+.+|+.| ...|++|++.+        +.--  ....++..+.... .......    .+.. 
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L-~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-  108 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKL-AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRAS-GRNKVQDYADKFGVQ-  108 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHH-HHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHH-CCCCTHHHHHHHTCE-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhh-cCcchhhhhhhcCce-
Confidence            479999999999999999999998 68999998653        2210  1111111000000 0000000    0000 


Q ss_pred             cCCHHH-HhhcCCEEEEcCCCCcccccccCHhHHccCCC-Cc-EEEecCCCccCCHHHHHHHHHcCCc
Q 019328          227 ASSMDE-VLREADVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       227 ~~~l~e-ll~~sDiV~l~lplt~~t~~li~~~~l~~mk~-ga-ilIN~sRG~~vd~~aL~~aL~~g~i  291 (342)
                      ..+.++ +-..||+++-|     .+.+.|+.+..++++. ++ +++--+.+++-++ +.-..|+++.|
T Consensus       109 ~~~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI  170 (255)
T d1bgva1         109 FFPGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNM  170 (255)
T ss_dssp             EEETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTC
T ss_pred             eechhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCC
Confidence            011112 22579998755     5677888888887764 33 7777777776554 43334565444

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.29  E-value=0.0055  Score=48.65  Aligned_cols=103  Identities=17%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|++|..+|-.++ +++.-++..+|.++........| ..........  .......+.+ .++.||+|+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D-l~~a~~~~~~--~~i~~~~~~~-~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD-MQHGSSFYPT--VSIDGSDDPE-ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH-HHHTGGGSTT--CEEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH-HHhccccCCC--ceeecCCCHH-HhhCCcEEEEec
Confidence            47999999999999997754 45556899999887542211111 1000000011  1112234444 578899999984


Q ss_pred             --CCCc-cccc-cc--CH-------hHHccCCCCcEEEecC
Q 019328          245 --VLDK-TTYH-LI--NK-------ERLATMKKEAILVNCS  272 (342)
Q Consensus       245 --plt~-~t~~-li--~~-------~~l~~mk~gailIN~s  272 (342)
                        |..+ ++|. ++  |.       ..+....|++++|+++
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence              3322 2221 11  11       2344557888999887

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0061  Score=49.28  Aligned_cols=106  Identities=13%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCC-CCCc-cccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPV-TWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~l~ell~~sD  238 (342)
                      .+...+|+|||.|++|..+|..|. +++.-++..||.+.......-.| .    .+.. .... ......+.+ .++.||
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alD-l----~~~~~~~~~~~~~~~~d~~-~~~~ad   89 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALD-L----QHGSLFLSTPKIVFGKDYN-VSANSK   89 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHH-H----HHTTTTCSCCEEEEESSGG-GGTTEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHH-H----hCcchhcCCCeEEeccchh-hhcccc
Confidence            355568999999999999999864 23444899999886542111111 1    1111 0011 111233444 458899


Q ss_pred             EEEEcC--CCCc-cccc-cc--CHhH-------HccCCCCcEEEecCC
Q 019328          239 VISLHP--VLDK-TTYH-LI--NKER-------LATMKKEAILVNCSR  273 (342)
Q Consensus       239 iV~l~l--plt~-~t~~-li--~~~~-------l~~mk~gailIN~sR  273 (342)
                      +|+++.  |..+ +++. ++  |.+.       +....|++++++++.
T Consensus        90 ivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             EEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            999884  3333 2332 22  2221       334478999999976

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.22  E-value=0.002  Score=51.83  Aligned_cols=94  Identities=14%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH----HHHhhcCCE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLREADV  239 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~~sDi  239 (342)
                      .|.+|.|.|.|.||...++.+ +..|.+|++.++++++..  +...++       ..........++    .+.....|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a-~~~g~~v~~~~~~~~r~~--~~k~~G-------a~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLE--LAKELG-------ADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH--HHHHTT-------CSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeecccchhhhhHHH-hcCCCeEeccCCCHHHhh--hhhhcC-------cceecccccchhhhhcccccCCCce
Confidence            478999999999999999885 799999999998876532  222222       111111111222    233344566


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      ++.+.. .+++    -...+..++++..++.++
T Consensus        97 ~v~~~~-~~~~----~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAV-SKPA----FQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSC-CHHH----HHHHHHHEEEEEEEEECC
T ss_pred             EEeecC-CHHH----HHHHHHHhccCCceEecc
Confidence            666654 3332    245777788888888875

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.22  E-value=0.0048  Score=52.45  Aligned_cols=73  Identities=12%  Similarity=0.185  Sum_probs=47.8

Q ss_pred             CCCEEEEEccChHHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCC
Q 019328          164 KGQTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EAD  238 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~-vA~~l~~a~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD  238 (342)
                      +--+|||||+|.||+. ++..+ +.. +++|. ++|++++.. +.+.+.|+       ........+.+++++++  +.|
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~-~~~~~~~ivav~d~~~~~a-~~~~~~~~-------i~~~~~~~~~d~~ell~~~~iD  102 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGNAEKA-KIVAAEYG-------VDPRKIYDYSNFDKIAKDPKID  102 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHT-TTCSSEEEEEEECSCHHHH-HHHHHHTT-------CCGGGEECSSSGGGGGGCTTCC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHH-HhCCCceEEEEecCCHHHH-HHHHHhhc-------cccccccccCchhhhcccccce
Confidence            3458999999999974 56665 344 78877 679887643 33333332       11122233578999986  478


Q ss_pred             EEEEcCC
Q 019328          239 VISLHPV  245 (342)
Q Consensus       239 iV~l~lp  245 (342)
                      +|+++.|
T Consensus       103 ~V~I~tp  109 (221)
T d1h6da1         103 AVYIILP  109 (221)
T ss_dssp             EEEECSC
T ss_pred             eeeeccc
Confidence            8999998

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.012  Score=46.05  Aligned_cols=102  Identities=9%  Similarity=0.109  Sum_probs=70.5

Q ss_pred             CCCEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .-|+|+|||.    |..|..+.+.| +.+|.+++.+.+++...                 .-.+...+.++.++-..-|+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L-~~~g~~~~~v~~~~~~~-----------------~i~g~~~~~~l~~i~~~iD~   73 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHH-hcCCCCceEEEeccccc-----------------eeeceecccchhhccCCCce
Confidence            4578999997    78999999998 78999999998865321                 01123345788888888999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +++++| .+.+..++.+ .. .+..+++++..+   ..++++...|.+.|
T Consensus        74 v~v~~p-~~~v~~~v~~-~~-~~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          74 LDVFRP-PSALMDHLPE-VL-ALRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             EEECSC-HHHHTTTHHH-HH-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             EEEecc-HHHHHHHHHH-HH-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            999999 3334555443 22 345678888654   35666555555554

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.15  E-value=0.017  Score=45.48  Aligned_cols=105  Identities=13%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             CEEEEEccChHHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      .+|+|||.|++|..+|-.++ +++--++..||..++..... .......... ...........+. +.++.||+|++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~-alDl~~~~~~-~~~~~~i~~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGE-AMDLAHAAAG-IDKYPKIVGGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHH-HHHHHHHHHT-TTCCCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHH-HHHHhhhccc-cCCCCccccCCCH-HHhccccEEEEec
Confidence            47999999999999998764 24445899999886542111 1111000000 0000111222344 5778999999885


Q ss_pred             C--CCccc-c-ccc--C-------HhHHccCCCCcEEEecCC
Q 019328          245 V--LDKTT-Y-HLI--N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 p--lt~~t-~-~li--~-------~~~l~~mk~gailIN~sR  273 (342)
                      -  .++.. + .++  |       .+.+.+..|.+++++++.
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            3  33321 1 111  1       134555678899999987

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0083  Score=48.56  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------hc
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (342)
                      .|.+|.|.|. |.+|....+.+ +.+|++|++.++++++.  ++..+++       ..........++.+-+      ..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a-~~~G~~vi~~~~~~~~~--~~~~~~G-------a~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQ--KIVLQNG-------AHEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHH--HHHHHTT-------CSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCEEEEEeccccccccccccc-cccCccccccccccccc--ccccccC-------cccccccccccHHHHhhhhhccCC
Confidence            5889999995 99999999984 89999999998876532  2222222       1111111122343322      22


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .|+|+-++.  .++    -...++.|+++..++.++
T Consensus        98 ~d~v~d~~g--~~~----~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          98 IDIIIEMLA--NVN----LSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEEEEESCH--HHH----HHHHHHHEEEEEEEEECC
T ss_pred             ceEEeeccc--HHH----HHHHHhccCCCCEEEEEe
Confidence            677776654  221    245677888888888875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.02  E-value=0.0037  Score=50.89  Aligned_cols=95  Identities=9%  Similarity=0.065  Sum_probs=58.5

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----c
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (342)
                      -.|.+|.|+|.|.||...++.+ +.+|++ |++.|+++.+..  +..+++.       .........++.+.+.     .
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~a-k~~g~~~v~~~~~~~~k~~--~a~~~Ga-------~~~i~~~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRLE--LAKQLGA-------THVINSKTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHHH--HHHHHTC-------SEEEETTTSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcc-cccccceeeeeccHHHHHH--HHHHcCC-------eEEEeCCCcCHHHHHHHHcCCC
Confidence            3588999999999999999985 788885 556787765432  1222221       1111111223333322     2


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      .|+|+-|+.. +++.    +..++.++++..++.++
T Consensus        97 ~D~vid~~G~-~~~~----~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          97 VNFALESTGS-PEIL----KQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEEEECSCC-HHHH----HHHHHTEEEEEEEEECC
T ss_pred             CcEEEEcCCc-HHHH----HHHHhcccCceEEEEEe
Confidence            6888888763 2222    34677788888888776

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.92  E-value=0.0066  Score=46.38  Aligned_cols=100  Identities=12%  Similarity=0.129  Sum_probs=67.9

Q ss_pred             CEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      |+|+|||.    |..|..+.+.| +.+|.+|+.++|+.+.-                   .+...+.+++++-..-|+++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHH-HHCCCEEEEEccccccc-------------------cCccccccchhccccceEEE
Confidence            68999994    78899999998 68999999998864321                   12234578999888899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCcc
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++| .+.+..++. +.. .+...++++..+   ..+ +.+.+.+++..+.
T Consensus        62 i~vp-~~~~~~~l~-~~~-~~g~k~v~~~~g---~~~-~~~~~~a~~~gi~  105 (116)
T d1y81a1          62 FVVP-PKVGLQVAK-EAV-EAGFKKLWFQPG---AES-EEIRRFLEKAGVE  105 (116)
T ss_dssp             ECSC-HHHHHHHHH-HHH-HTTCCEEEECTT---SCC-HHHHHHHHHHTCE
T ss_pred             EEeC-HHHHHHHHH-HHH-hcCCceEEeccc---hhh-HHHHHHHHHcCCE
Confidence            9999 223334443 333 344557777643   334 4566777665553

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.79  E-value=0.0052  Score=49.79  Aligned_cols=95  Identities=15%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh-----cC
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~s  237 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|+++++...  ...++       ..........+.++..+     ..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a-~~~g~~~vv~~~~~~~k~~~--~~~~g-------a~~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEKLKL--AERLG-------ADHVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHHHHH--HHHTT-------CSEEEETTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCCChHHHHHHHHH-HhhcCcccccccchhHHHHH--Hhhcc-------cceeecCcccHHHHHHHhhCCCCc
Confidence            478999999999999999985 67775 77888888754321  11121       11111111123344433     36


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      |+|+.++.... +    -...++.++++..++.++-
T Consensus       102 d~vid~~g~~~-~----~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         102 NVAMDFVGSQA-T----VDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEEEESSCCHH-H----HHHGGGGEEEEEEEEECCC
T ss_pred             eEEEEecCcch-H----HHHHHHHHhCCCEEEEEeC
Confidence            88888877322 2    1446777888888888753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.72  E-value=0.019  Score=45.39  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=27.4

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCC--cEEEEEcCChh
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQA  200 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g--~~V~~~d~~~~  200 (342)
                      .+|+||| .|.+|+.+|..++ ..|  -++..+|..+.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~-~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLA-KEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCcccccccccchhh
Confidence            3799999 5999999999874 445  48999998753

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.66  E-value=0.038  Score=44.35  Aligned_cols=111  Identities=14%  Similarity=0.222  Sum_probs=69.2

Q ss_pred             ccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .|.|+||++||=| ++.++.+..+ ..||+++....|..   ++...........   .   .........++++.++.+
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNAA---E---SGGSFELLHDPVKAVKDA   73 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHH---H---HTCEEEEESCHHHHTTTC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEecccccCCChHHHHHHHHhhh---c---ccceEEEecCHHHHhhhc
Confidence            3789999999974 4667888876 68999999998752   1111111110000   0   001123356899999999


Q ss_pred             CEEEEcCCCCc------c------cccccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          238 DVISLHPVLDK------T------TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       238 DiV~l~lplt~------~------t~~li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      |+|..-.-...      +      ..-.++.+.++.+|++++|.-..   ||.=|+.
T Consensus        74 dviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~  130 (163)
T d1pvva2          74 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTD  130 (163)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCH
T ss_pred             cEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccch
Confidence            99987532111      1      11356788999999999988764   5544443

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.62  E-value=0.0095  Score=48.22  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=46.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+|+|.|+|.|..|++++..| +..|+ +|..++|+.++. +.....++.            ....++.  ..++|+|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL-~~~g~~~I~I~nR~~~ka-~~L~~~~~~------------~~~~~~~--~~~~DliIN   79 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALYGY------------AYINSLE--NQQADILVN   79 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHHTC------------EEESCCT--TCCCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEecccHHHH-HHHHHhhhh------------hhhhccc--ccchhhhee
Confidence            688999999999999999997 67887 799999997642 222222110            0111111  257899999


Q ss_pred             cCCC
Q 019328          243 HPVL  246 (342)
Q Consensus       243 ~lpl  246 (342)
                      |.|.
T Consensus        80 aTpi   83 (167)
T d1npya1          80 VTSI   83 (167)
T ss_dssp             CSST
T ss_pred             cccc
Confidence            9885

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.60  E-value=0.0087  Score=48.43  Aligned_cols=102  Identities=25%  Similarity=0.238  Sum_probs=56.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--cCCEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sDiV  240 (342)
                      +|||||+|.||+..++.+ +...    ..+...+.....                  .........+++++++  +.|+|
T Consensus         9 kv~iIG~G~~g~~h~~~l-~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~e~l~~~~iD~V   69 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRREL------------------GSLDEVRQISLEDALRSQEIDVA   69 (172)
T ss_dssp             EEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSCC------------------CEETTEEBCCHHHHHHCSSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHH-HhCCCCcEEEEEeccchHHH------------------HHhhccCcCCHHHHHhCCCcchh
Confidence            799999999999988876 4322    333332221110                  0011123458999986  45889


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecC-CCccCCHHHHHHHHHcCCc
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s-RG~~vd~~aL~~aL~~g~i  291 (342)
                      ++++|  ++++.-+-...++.=|  .+|+.-= --.+-+.+.|.++.++.+.
T Consensus        70 ~I~tp--~~~H~~~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~  117 (172)
T d1lc0a1          70 YICSE--SSSHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGR  117 (172)
T ss_dssp             EECSC--GGGHHHHHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             hhccc--ccccccccccccccch--hhhcCCCccccHHHHHHHHHHHHHcCC
Confidence            99998  4554433344444322  3555421 1234455667776555443

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.55  E-value=0.036  Score=44.00  Aligned_cols=99  Identities=19%  Similarity=0.298  Sum_probs=63.0

Q ss_pred             cCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChh-hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       163 l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      |.|+||++||=   |++.++++..+ ..||+++..+-|... +......          ...+.......++++.++.+|
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l-~~~g~~~~~~~p~~~~~~~~~~~----------~~~~~~~~~~~d~~eai~~aD   69 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEIL----------DELNYPVKEVENPFEVINEVD   69 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHHH----------TTCCSCEEEESCGGGTGGGCS
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH-HHcCCeeEEEecccccccchhhc----------ccCCCeEEEEeCHHHHhhcCC
Confidence            57999999996   55999999986 689998765544321 1111100          011223344578999999999


Q ss_pred             EEEEcCCCCcc-----------cccccCHhHHccCCCCcEEEecC
Q 019328          239 VISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       239 iV~l~lplt~~-----------t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +|..--.....           ..-.++.+.++.+|++++|.-+.
T Consensus        70 vvy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          70 VLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             EEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             eEEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence            99753211110           11235788888888888887664

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.55  E-value=0.016  Score=46.61  Aligned_cols=75  Identities=13%  Similarity=0.214  Sum_probs=44.9

Q ss_pred             CEEEEEccChHHHHHHHH-HHh---cC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          166 QTVGVIGAGRIGSAYARM-MVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~-l~~---a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .+|.|||.|.+|...+-. +++   .+ .-++..+|..+.+.. ...+ ......   ..........+.++.++.||+|
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~-~~~d-~~~~~~---~~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQK-IVVD-FVKRLV---KDRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHH-HHHH-HHHHHH---TTSSEEEECSSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHH-HHHH-HHHhhh---ccCceEEEecCcccccCCCCEE
Confidence            379999999988776632 211   12 358999999876432 1111 100000   0112223346788999999999


Q ss_pred             EEcCC
Q 019328          241 SLHPV  245 (342)
Q Consensus       241 ~l~lp  245 (342)
                      +++.-
T Consensus        76 Vita~   80 (162)
T d1up7a1          76 IFQFR   80 (162)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            99864

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.51  E-value=0.022  Score=45.34  Aligned_cols=102  Identities=16%  Similarity=0.260  Sum_probs=64.1

Q ss_pred             cCCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 l~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      |.|+||++||=   ++..++++..+ ..||+++..+.|..-...+.....    ...   .........++++.++.+|+
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~-~~~g~~~~~~~P~~~~~~~~~~~~----~~~---~~~~~~~~~d~~~av~~aDv   73 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEE----LRE---KGMKVVETTTLEDVIGKLDV   73 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHHH----HHH---TTCCEEEESCTHHHHTTCSE
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHH-HhcCCcEEEEccchhhcchHHHHH----HHh---hcccceeecCHHHhhccCcE
Confidence            68999999998   68999999986 789999999987642211111111    111   11122345789999999999


Q ss_pred             EEEcCCCCccc-----------ccccCHhHHccCCCCcEEEecC
Q 019328          240 ISLHPVLDKTT-----------YHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~lplt~~t-----------~~li~~~~l~~mk~gailIN~s  272 (342)
                      |..........           .-.++.+.++.+|+.+++.-..
T Consensus        74 vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          74 LYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             EEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EEeeccccccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            98765432210           1123455566666666655443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.46  E-value=0.036  Score=44.92  Aligned_cols=95  Identities=15%  Similarity=0.043  Sum_probs=57.7

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhccCCCCCcc-ccccC-CHHHHh-----
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRAS-SMDEVL-----  234 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~ell-----  234 (342)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++.+..  +..+++.       .... ..... ....+.     
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r~~--~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~   96 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKFP--KAKALGA-------TDCLNPRELDKPVQDVITELTA   96 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--HHHHTTC-------SEEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCEEEEECCChHHHHHHHHH-HHhCCceeeeeccchHHHH--HHHHhCC-------CcccCCccchhhhhhhHhhhhc
Confidence            3578999999999999999985 89998 6888898876532  2222221       1110 00111 222222     


Q ss_pred             hcCCEEEEcCCCCcccccccCHhHHccCCCC-cEEEecC
Q 019328          235 READVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (342)
Q Consensus       235 ~~sDiV~l~lplt~~t~~li~~~~l~~mk~g-ailIN~s  272 (342)
                      ...|+++-|... +++    ....++.+++| ..++.++
T Consensus        97 ~G~d~vie~~G~-~~~----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          97 GGVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SCBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred             CCCcEEEEeccc-chH----HHHHHHHhhcCCeEEEecC
Confidence            447888888763 222    24466777775 5666664

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.46  E-value=0.091  Score=41.75  Aligned_cols=113  Identities=18%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             cCCCEEEEEcc--ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          163 LKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       163 l~gktvGIiG~--G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      |.|++|++||=  .++-++.+..+ ..||+++....|..-...+.............+   .......++++.++.+|+|
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~-~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~---~~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEecchhhhhhhhHHHHHHHHHhhcC---CceEEEecHHHhhhhhhhe
Confidence            67999999994  57999999986 689999999887521000000000000000001   1223457899999999999


Q ss_pred             EEcCCCCcc------------ccc-ccCHhHHccCCCCcEEEecC---CCccCCH
Q 019328          241 SLHPVLDKT------------TYH-LINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       241 ~l~lplt~~------------t~~-li~~~~l~~mk~gailIN~s---RG~~vd~  279 (342)
                      ..-......            ... ..+......+|++++|.-+.   ||.=|+.
T Consensus        77 yt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~  131 (161)
T d1vlva2          77 YTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTY  131 (161)
T ss_dssp             EECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCH
T ss_pred             eccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccch
Confidence            876542211            011 22333444578888887763   5654444

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.028  Score=45.30  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=65.5

Q ss_pred             ccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .|.|+||++||=|+ +-++++..+ ..||+++....|..-.................+   .......++++.+..+|+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~-~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~---~~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHH-HHcCCEEEEEeccccCCchHHHHHHHHHHhccC---CEEEEEcCHHHHHhhhhhe
Confidence            37899999999763 444555554 578999998887522110011110000000101   1123457899999999999


Q ss_pred             EEcCCCCcc------------cccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHPVLDKT------------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~lplt~~------------t~~li~~~~l~~mk~gailIN~s  272 (342)
                      ..-......            ....++.+.++.++++++|.-..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          77 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            987654322            11336778899999999998874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.38  E-value=0.033  Score=45.21  Aligned_cols=39  Identities=23%  Similarity=0.213  Sum_probs=34.1

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  202 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~  202 (342)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++.++.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~a-k~~G~~~Vi~vd~~~~kl   67 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGC-KSAGASRIIGIDLNKDKF   67 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceEEEecCcHHHH
Confidence            3588999999999999999986 78995 899999988764

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.36  E-value=0.025  Score=44.42  Aligned_cols=98  Identities=8%  Similarity=0.052  Sum_probs=66.8

Q ss_pred             CCCEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .-|+|+|||.    |..|..+++.| +.+|.+|+.++|....-                   .+...+.+++++-..-|+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L-~~~g~~v~pVnP~~~~i-------------------~G~~~~~sl~dlp~~iD~   77 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEEV-------------------LGRKCYPSVLDIPDKIEV   77 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGCSSCCSE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHH-HHCCCEEEEECCccccc-------------------CCCcccccccccCccceE
Confidence            4689999996    57999999998 68999999999864321                   122346789999889999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHHHH
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  287 (342)
                      +++++|  ++...-+-++.. .+...+++++.+   ..+++....+-+
T Consensus        78 v~i~vp--~~~~~~~~~e~~-~~g~k~v~~~~G---~~~ee~~~~a~~  119 (139)
T d2d59a1          78 VDLFVK--PKLTMEYVEQAI-KKGAKVVWFQYN---TYNREASKKADE  119 (139)
T ss_dssp             EEECSC--HHHHHHHHHHHH-HHTCSEEEECTT---CCCHHHHHHHHH
T ss_pred             EEEEeC--HHHHHHHHHHHH-HhCCCEEEEecc---ccCHHHHHHHHH
Confidence            999999  443322223333 345667777665   345554444433

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.33  E-value=0.045  Score=44.84  Aligned_cols=107  Identities=13%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             ccCCCEEEEEcc--ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~--G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .|.|.||++||=  -++.++++..+ ..||+++.+..|..-...+.+.+.........   ........++++.++.+|+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~-~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEES---GAKLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHH---TCEEEEESCHHHHTTTCSE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHH-HHcCCEEEEEccHHHHhhhHHHHHHHHHhhcc---CCeEEEEeChhhccccccE
Confidence            578999999994  48999999986 68999999998843111111111100000000   1123345789999999999


Q ss_pred             EEEcCCCCcc--c------------ccccCHhHHccCCCCcEEEecC
Q 019328          240 ISLHPVLDKT--T------------YHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~lplt~~--t------------~~li~~~~l~~mk~gailIN~s  272 (342)
                      |..-.-....  .            ..+..+.....+|++++|.-+.
T Consensus        78 Vyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          78 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            9876542211  1            1122344556688999998764

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.26  E-value=0.024  Score=42.44  Aligned_cols=63  Identities=11%  Similarity=0.132  Sum_probs=45.5

Q ss_pred             CCCEEEEEcc----------ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH
Q 019328          164 KGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       164 ~gktvGIiG~----------G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (342)
                      ..|+|||+|+          ..-.-.+.+.| ...|++|.+|||+.....                .........+++++
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L-~~~g~~v~iyDP~v~~~~----------------~~~~~~~~~~l~~~   76 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKLE----------------SEDQSVLVNDLENF   76 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCCC----------------TTCCSEECCCHHHH
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHH-hccccceeeecCCcChhH----------------hccCCEEEeCHHHH
Confidence            3469999998          35667888987 688999999999875310                00112234689999


Q ss_pred             hhcCCEEEEc
Q 019328          234 LREADVISLH  243 (342)
Q Consensus       234 l~~sDiV~l~  243 (342)
                      ++.||+|++.
T Consensus        77 ~~~sDiII~~   86 (108)
T d1dlja3          77 KKQANIIVTN   86 (108)
T ss_dssp             HHHCSEEECS
T ss_pred             HhhCCEEEEc
Confidence            9999987654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.019  Score=45.36  Aligned_cols=91  Identities=8%  Similarity=-0.009  Sum_probs=52.4

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEEEE
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISL  242 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV~l  242 (342)
                      ++-|+|+|.+|+.+++.| ...|.+|++.+..++.........     ...+.. .-.....+.+-+    +.+||.+++
T Consensus         5 HiII~G~g~~g~~l~~~L-~~~~~~v~vId~d~~~~~~~~~~~-----~~~~~~-vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           5 HFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQR-----LGDNAD-VIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHH-----HCTTCE-EEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCEEEEeccchhHHHHHHHh-----hcCCcE-EEEccCcchHHHHHhccccCCEEEE
Confidence            488999999999999998 678999999988764321111110     000110 000011222222    568999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCc
Q 019328          243 HPVLDKTTYHLINKERLATMKKEA  266 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~ga  266 (342)
                      +++...  .++.-....+.+.|..
T Consensus        78 ~~~~d~--~n~~~~~~~r~~~~~~   99 (153)
T d1id1a_          78 LSDNDA--DNAFVVLSAKDMSSDV   99 (153)
T ss_dssp             CSSCHH--HHHHHHHHHHHHTSSS
T ss_pred             ccccHH--HHHHHHHHHHHhCCCC
Confidence            988433  3333344455555554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.0084  Score=48.61  Aligned_cols=91  Identities=18%  Similarity=0.143  Sum_probs=58.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHH--HhhcCCEE
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~sDiV  240 (342)
                      .|++|.|.|. |.+|+...+.+ +.+|++|++.++++++...  ..+.+       .... .......++  -....|+|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqla-k~~G~~vi~~~~~~~~~~~--~~~lG-------a~~~-i~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLAL--PLALG-------AEEA-ATYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSHH--HHHTT-------CSEE-EEGGGHHHHHHHTTSEEEE
T ss_pred             CCCEEEEEeccccchhhhhhhh-ccccccccccccccccccc--ccccc-------ccee-eehhhhhhhhhcccccccc
Confidence            5789999995 99999999985 8999999999887654321  11121       1111 111111111  23557888


Q ss_pred             EEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +-+..  + +    -...++.++++..++.++
T Consensus        96 ~d~~G--~-~----~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          96 LEVRG--K-E----VEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EECSC--T-T----HHHHHTTEEEEEEEEEC-
T ss_pred             ccccc--h-h----HHHHHHHHhcCCcEEEEe
Confidence            87654  2 1    156788899999999875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.042  Score=43.37  Aligned_cols=103  Identities=21%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             CEEEEEcc-ChHHHHHHHHHH-h-cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCC-CccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMV-E-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~-~-a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+|+|||. |++|..+|-.|+ + .+.-++..+|..+....+.  ..    +.+.... ........+..+.++.||+|+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a--~D----l~h~~~~~~~~~~~~~~~~~~~~~aDvvv   74 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVA--VD----LSHIPTAVKIKGFSGEDATPALEGADVVL   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHH--HH----HHTSCSSCEEEEECSSCCHHHHTTCSEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHH--HH----HHCCccccCCcEEEcCCCccccCCCCEEE
Confidence            47999995 999999998764 2 4677999999764322111  11    1111111 111111133345688999999


Q ss_pred             EcC--CCCcc-cc-ccc--C-------HhHHccCCCCcEEEecCCC
Q 019328          242 LHP--VLDKT-TY-HLI--N-------KERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~l--plt~~-t~-~li--~-------~~~l~~mk~gailIN~sRG  274 (342)
                      ++.  |..|. +| .++  |       .+.+....|++++|.++.-
T Consensus        75 itaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          75 ISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             ECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence            984  43332 22 222  2       1344555788999998653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.17  E-value=0.013  Score=47.44  Aligned_cols=94  Identities=14%  Similarity=0.164  Sum_probs=61.2

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHh------hc
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (342)
                      .|.+|.|.|. |.+|...++.+ +.+|++|++..++.++.  ++..++       +..........++.+-+      ..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla-~~~g~~vi~~~~~~~~~--~~l~~~-------Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR--EMLSRL-------GVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH--HHHHTT-------CCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCCcccccchhh-ccccccceeeecccccc--cccccc-------cccccccCCccCHHHHHHHHhCCCC
Confidence            4789999885 99999999985 89999999988776542  222222       21111111223443332      34


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+-++.  .++    ....++.++++..+|+++.
T Consensus        95 ~d~v~d~~g--~~~----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          95 VDVVLNSLA--GEA----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             EEEEEECCC--THH----HHHHHHTEEEEEEEEECSC
T ss_pred             EEEEEeccc--chH----HHHHHHHhcCCCEEEEEcc
Confidence            788888776  222    2456788899999999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.08  E-value=0.0097  Score=45.78  Aligned_cols=88  Identities=11%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHH----hhcCCEEE
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  241 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~sDiV~  241 (342)
                      |.+-|+|+|.+|+.+++.| ++.+.  .+.+..+.......         ..+..-. .....+.+.+    +.+|+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L-~~~~i--~vi~~d~~~~~~~~---------~~~~~~i-~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL-RGSEV--FVLAEDENVRKKVL---------RSGANFV-HGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS-CGGGE--EEEESCTTHHHHHH---------HTTCEEE-ESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-cCCCC--EEEEcchHHHHHHH---------hcCcccc-ccccCCHHHHHHhhhhcCcEEE
Confidence            5688999999999999997 66654  44555544321111         1111101 0112233323    57899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEE
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAIL  268 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gail  268 (342)
                      ++.+..  ..+++-...++.+.|...+
T Consensus        68 ~~~~~d--~~n~~~~~~~r~~~~~~~i   92 (129)
T d2fy8a1          68 VNLESD--SETIHCILGIRKIDESVRI   92 (129)
T ss_dssp             ECCSSH--HHHHHHHHHHHHHCSSSCE
T ss_pred             Eeccch--hhhHHHHHHHHHHCCCceE
Confidence            988843  3444444555566666433

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.82  E-value=0.026  Score=44.44  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             CEEEEEc-cChHHHHHHHHHH-hcCCcEEEEEcCChhh-HHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIG-AGRIGSAYARMMV-EGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~-~a~g~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+|+||| .|.+|+.+|-.+. +.+.-++..||....+ ..+..............  ... ....+.++ ++.||+|++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~--~~~-i~~~~~~~-~~~aDiVvi   76 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDS--NTR-VRQGGYED-TAGSDVVVI   76 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTC--CCE-EEECCGGG-GTTCSEEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccC--Cce-EeeCCHHH-hhhcCEEEE
Confidence            4799999 6999999998864 3444589999964322 11111111110000000  111 12234444 589999998


Q ss_pred             cC--CCCcc-ccc-cc--C-------HhHHccCCCCcEEEecCC
Q 019328          243 HP--VLDKT-TYH-LI--N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~l--plt~~-t~~-li--~-------~~~l~~mk~gailIN~sR  273 (342)
                      +.  |..+. +|. ++  |       .+.+....|+++++.++.
T Consensus        77 taG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          77 TAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             ecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            83  33332 221 11  1       134566778899998854

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.67  E-value=0.026  Score=43.71  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             ccCCCEEEEEcc----ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~----G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      -++-++|+|||.    |..|..+.+.|...+..+|+..+|..+.-                   .+...+.|++++-..-
T Consensus         5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-------------------~G~~~y~sl~dlp~~v   65 (129)
T d2csua1           5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-------------------QGVKAYKSVKDIPDEI   65 (129)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-------------------TTEECBSSTTSCSSCC
T ss_pred             hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-------------------CCeEeecchhhcCCCC
Confidence            356689999997    89999999998433447999999875421                   1233467888888889


Q ss_pred             CEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-----CCHHHHHHHHHcCCc
Q 019328          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----IDEVALVEHLKQNPM  291 (342)
Q Consensus       238 DiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-----vd~~aL~~aL~~g~i  291 (342)
                      |.+++++| .+.+..++ ++..+.=-++++++.-+-++.     ..++.|.+..++..+
T Consensus        66 Dlvvi~vp-~~~~~~~~-~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          66 DLAIIVVP-KRFVKDTL-IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             SEEEECSC-HHHHHHHH-HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEecC-hHHhHHHH-HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            99999999 33444444 333332233444444333332     223345555554333

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.62  E-value=0.04  Score=47.48  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +|+||++-|.|- +.||+++|++| ..-|++|+..+|+...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~i~~r~~~~   42 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEEL-AGLGARVYTCSRNEKE   42 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            689999999995 77999999998 4889999999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.58  E-value=0.05  Score=39.74  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=32.2

Q ss_pred             cCCCEEEEEccChHHHH-HHHHHHhcCCcEEEEEcCChhhH
Q 019328          163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~-vA~~l~~a~g~~V~~~d~~~~~~  202 (342)
                      -+.|++=+||.|.+|.+ +|+.| +..|.+|.++|....+.
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~~~   45 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADGVV   45 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCSHH
T ss_pred             hhCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCChh
Confidence            35789999999999954 58987 78999999999876543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.39  E-value=0.024  Score=42.96  Aligned_cols=35  Identities=11%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .++|.|||-|.||-++|..+ ..+|.+|..+.+...
T Consensus        22 p~~v~IiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVI-KRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHH-Hhccccceeeehhcc
Confidence            47899999999999999997 699999999987643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.33  E-value=0.021  Score=45.75  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCH-HHHhh-----
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLR-----  235 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~-----  235 (342)
                      .|.+|.|+|. |.+|...++.+ ++.| .+|++.++++.+...  ...++.       .........++ +++.+     
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~-~~~g~~~V~~~~~~~~~~~~--~~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVEA--AKRAGA-------DYVINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHHH--HHHHTC-------SEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEeccccceeeeeecc-cccccccccccccchhhHHH--HHHcCC-------ceeeccCCcCHHHHHHHHhhcc
Confidence            4789999995 99999999986 6777 589999988765322  222221       00000111222 33332     


Q ss_pred             cCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecC
Q 019328          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       236 ~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~s  272 (342)
                      ..|+++-|.. .+++.    +..++.++|+..++.++
T Consensus        97 ~~d~vid~~g-~~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          97 GVDAVIDLNN-SEKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CEEEEEESCC-CHHHH----TTGGGGEEEEEEEEECC
T ss_pred             cchhhhcccc-cchHH----HhhhhhcccCCEEEEec
Confidence            3688887765 33322    23567788888888774

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.013  Score=47.33  Aligned_cols=98  Identities=19%  Similarity=0.163  Sum_probs=54.4

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      -+|+|+|+ |+||+.+++.+.+.-++++. ++++...+....   ..+..   .+....+.....++++++..+|+|+--
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~~~~---~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGEL---AGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTCS---SSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hhhhh---hccccCCceeeccHHHHhcccceEEEe
Confidence            47999995 99999999986555688865 556543321000   00000   011112223356788899999998766


Q ss_pred             CCCCcc-cccccCHhHHccCCCCcEEEecCCCc
Q 019328          244 PVLDKT-TYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       244 lplt~~-t~~li~~~~l~~mk~gailIN~sRG~  275 (342)
                      ..  |+ +...+.    ...+.+.-+|--++|-
T Consensus        79 s~--p~~~~~~~~----~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          79 TR--PEGTLNHLA----FCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             SC--HHHHHHHHH----HHHHTTCEEEECCCCC
T ss_pred             cc--HHHHHHHHH----HHHhccceeEEecCCC
Confidence            44  32 232221    1123455555556663

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.083  Score=41.99  Aligned_cols=102  Identities=17%  Similarity=0.315  Sum_probs=63.0

Q ss_pred             cCCCEEEEEcc---ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          163 LKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       163 l~gktvGIiG~---G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      +.|.+|++||=   |++.++++..+ ..|| ..+++..|..-...+...+    .++..   +.......+++++++++|
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l-~~~~~~~~~~~~P~~~~~~~~~~~----~~~~~---~~~~~~~~d~~~a~~~aD   73 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEK---GIAWSLHSSIEEVMAEVD   73 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHH----HHHHT---TCCEEECSCSTTTGGGCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHH-HHcCCCeEEeeccchhhhhHHHHH----HHhhh---ccccccccCHHHHhCcCc
Confidence            67999999995   77999999986 6886 4566666543211111100    11111   122234578999999999


Q ss_pred             EEEEcCCCCcc----------cccccCHhHHccCCCCcEEEecC
Q 019328          239 VISLHPVLDKT----------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       239 iV~l~lplt~~----------t~~li~~~~l~~mk~gailIN~s  272 (342)
                      +|..--.....          ....++.+.++.++++++|.-+.
T Consensus        74 vvy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          74 ILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             EEEECCCCGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             eEEeecccccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            99865332211          11234677778888888887653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.15  E-value=0.068  Score=38.49  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=31.6

Q ss_pred             CEEEEEccChHHH-HHHHHHHhcCCcEEEEEcCChhhHHH
Q 019328          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       166 ktvGIiG~G~IG~-~vA~~l~~a~g~~V~~~d~~~~~~~~  204 (342)
                      ++|=+||.|.+|. .+|+.| +..|++|.++|+...+..+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~   40 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTA   40 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHH
Confidence            5788999999998 668886 7999999999988765433

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.15  E-value=0.026  Score=43.01  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      +++.|||.|.||-++|..+ ..+|++|..+.+.+.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l-~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVY-SRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHH-HhhCcceeEEEeccc
Confidence            6899999999999999998 699999999887653

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.12  E-value=0.34  Score=39.09  Aligned_cols=104  Identities=14%  Similarity=0.212  Sum_probs=62.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCC--hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+|||+|. |-.|+++.+.|++-=..++.+...+  ..+.....   +. .+     .........+.+++.+++|++++
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~---~p-~~-----~~~~~~~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEI---FP-ST-----LENSILSEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHH---CG-GG-----CCCCBCBCCCHHHHHHHCSEEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCccccc---Cc-hh-----hccccccccCHhHhccccceEEE
Confidence            47999997 9999999999854334676655322  22111110   00 00     00111223577888889999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHHH
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH  285 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~a  285 (342)
                      ++|....      .+..... .+..+|+.|--==.+....++.
T Consensus        73 a~p~~~s------~~~~~~~-~~~~VIDlSadfRl~~~~~y~~  108 (176)
T d1vkna1          73 ALPAGAS------YDLVREL-KGVKIIDLGADFRFDDPGVYRE  108 (176)
T ss_dssp             CCSTTHH------HHHHTTC-CSCEEEESSSTTTCSSHHHHHH
T ss_pred             ccccHHH------HHHHHhh-ccceEEecCccccccchhhHHH
Confidence            9995542      2333333 5889999987666655555543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.074  Score=41.90  Aligned_cols=111  Identities=23%  Similarity=0.286  Sum_probs=58.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~--a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      |+|||||. |..|+.+.++|..  .| -.++..+..+......         ...... ........+ .+.++.+|+++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~---------~~~~~~-~~~~~~~~~-~~~~~~~DivF   70 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA---------PSFGGT-TGTLQDAFD-LEALKALDIIV   70 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC---------CGGGTC-CCBCEETTC-HHHHHTCSEEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc---------ccccCC-ceeeecccc-hhhhhcCcEEE
Confidence            68999998 9999999986532  22 2466655443321000         000000 000111112 23568999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCcc-----------CCHHHHHHHHHcCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----------IDEVALVEHLKQNP  290 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~-----------vd~~aL~~aL~~g~  290 (342)
                      +++|.... +. + ...+..-+.+.++|+.|.--=           |+.+.|..++++|.
T Consensus        71 ~a~~~~~s-~~-~-~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          71 TCQGGDYT-NE-I-YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             ECSCHHHH-HH-H-HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             EecCchHH-HH-h-hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            99994322 21 1 122222233456777764322           35567778887653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.89  E-value=0.03  Score=42.12  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      +++.|||.|.||-++|..+ ..+|.+|..+.+...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAY-ANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeee-cccccEEEEEEecce
Confidence            7999999999999999997 689999999987654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.87  E-value=0.12  Score=43.87  Aligned_cols=39  Identities=15%  Similarity=0.163  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +|.||++-|-|- +.||+++|++| ...|++|+..+|+.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKAL-HASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            589999999997 57999999998 4889999999988653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.81  E-value=0.025  Score=49.04  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhH
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~  202 (342)
                      ++|+||++-|-|- +.||+++|++|+ .-|++|+..+|+.+..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~   44 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDE   44 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHH
Confidence            4799999999986 789999999985 7899999999876543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.75  E-value=0.043  Score=41.20  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=32.6

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ..+|++.|||-|.||-++|..| ..+|.+|..+.+.+.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l-~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFF-NATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhcchhheEeeccch
Confidence            4589999999999999999998 689999999987643

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.72  E-value=0.27  Score=41.29  Aligned_cols=156  Identities=13%  Similarity=0.155  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCCh--
Q 019328          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ--  199 (342)
Q Consensus       123 vAE~al~l~L~~~R~~~~~~~~~~~g~w~~w~~~~~~g~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~--  199 (342)
                      +|=-+++-+|+..|-.                     |+.|...++.|+|.|.-|-.+|+.+. ..+. +++.+|+.-  
T Consensus         5 TaaV~LAgll~a~~~~---------------------g~~l~d~riv~~GAGsAg~gia~~l~-~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT---------------------EKKIEEVKVVVNGIGAAGYNIVKFLL-DLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------TCCTTTCEEEEECCSHHHHHHHHHHH-HHTCCEEEEEETTEEC
T ss_pred             HHHHHHHHHHHHHHHh---------------------CCChhhcEEEEEChHHHHHHHHHHHH-HhcccceEeecceeEE
Confidence            4555667777666543                     35789999999999999999999874 4444 799999861  


Q ss_pred             ---h--hHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          200 ---A--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       200 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                         +  .....+...+.    .....   .....++.+++..+|++...-     +.+++.++..+.|.+..++.=.|+-
T Consensus        63 ~~~r~~~~~~~~~~~~~----~~~~~---~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNP  130 (222)
T d1vl6a1          63 NENDPETCLNEYHLEIA----RITNP---ERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANP  130 (222)
T ss_dssp             CTTSGGGCSSHHHHHHH----HTSCT---TCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSS
T ss_pred             EcCcccccccHHHHHHH----hhhcc---hhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCC
Confidence               1  00111111111    10100   112357899999999876653     5788999999999999999999886


Q ss_pred             ccCCHHHHHHHHHcCCccEEEeecCCCCCCCCCCccCCCceEEcCCCC
Q 019328          275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (342)
Q Consensus       275 ~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi~TPHia  322 (342)
                      ..--|..  .+-..|+..-|.     .-|..   --+..|+++-|=++
T Consensus       131 t~~~e~~--~a~~~G~ai~At-----Gsp~~---p~Q~NN~yiFPGig  168 (222)
T d1vl6a1         131 VPEIDPE--LAREAGAFIVAT-----GRSDH---PNQVNNLLAFPGIM  168 (222)
T ss_dssp             SCSSCHH--HHHHTTCSEEEE-----SCTTS---SSBCCGGGTHHHHH
T ss_pred             ccchhhh--hheeccceEEec-----CCCCC---CccCcceeecchHH
Confidence            6544443  344556643332     22211   13556777777553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.61  E-value=0.16  Score=40.73  Aligned_cols=39  Identities=18%  Similarity=0.140  Sum_probs=33.3

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  202 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~  202 (342)
                      -.|.+|.|+|.|.+|...++.+ +++|+ +|++.|++.++.
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~a-k~~G~~~Vi~~d~~~~kl   65 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDKF   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGH
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceeeccCChHHHH
Confidence            4588999999999999999985 78886 799999987653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.59  E-value=0.1  Score=45.32  Aligned_cols=40  Identities=10%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             cccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .+|+||++-|-| .|.||+++|+.| ...|++|+..+|+..+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~l-a~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLL-SSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            589999999999 599999999998 4889999999998754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.55  E-value=0.13  Score=41.48  Aligned_cols=79  Identities=14%  Similarity=0.273  Sum_probs=46.9

Q ss_pred             CCEEEEEccChHHHHHHH--HHH--hcC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          165 GQTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~--~l~--~a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      +.+|+|||.|.+|...+-  .++  ..+ +-++..+|.+++.......+ ...... ............+.++.++.||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~-~~~~~~-~~~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI-AKKYVE-EVGADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH-HHHHHH-HTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH-HHHHHH-hcCCCeEEEEeCChhhcccCCCe
Confidence            458999999999976432  122  233 35999999987542111111 000000 11122333445789999999999


Q ss_pred             EEEcCC
Q 019328          240 ISLHPV  245 (342)
Q Consensus       240 V~l~lp  245 (342)
                      |+++.-
T Consensus        80 Vv~~~~   85 (171)
T d1obba1          80 VINTAM   85 (171)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            998753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.052  Score=46.06  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +.|+||++-|-|- +.||+++|++|+ ..|++|+..+++.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLV-GQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHH
Confidence            4799999999998 569999999985 789999999987654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.041  Score=41.38  Aligned_cols=34  Identities=26%  Similarity=0.617  Sum_probs=30.7

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      +++.|||-|.+|-++|..+ +.+|.+|..+++.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVI-NGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHh-hccccEEEEEeecch
Confidence            6899999999999999997 689999999988753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.47  E-value=0.048  Score=47.14  Aligned_cols=45  Identities=20%  Similarity=0.130  Sum_probs=36.9

Q ss_pred             cccccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHH
Q 019328          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       159 ~g~~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~  204 (342)
                      ....|+||++-|-| -+.||+++|+.|+ .-|++|+..+++..+..+
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~   57 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTESAE   57 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCchHHHH
Confidence            34579999999999 5899999999984 789999998877554333

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.057  Score=46.18  Aligned_cols=40  Identities=28%  Similarity=0.451  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ++|.||++-|-|.+. ||+++|+.++ ..|++|+.+|++.++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            479999999999955 9999999984 789999999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.044  Score=41.76  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=30.4

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      |++.|||-|.||-++|..+ ..+|.+|..+.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l-~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGIL-SALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHH-hcCCcEEEEEeecc
Confidence            7899999999999999997 69999999998864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.082  Score=44.97  Aligned_cols=39  Identities=26%  Similarity=0.282  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.||++-|.|- +.||+++|++|+ ..|++|+..||+...
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALH-ATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            589999999998 679999999984 789999999998654

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.26  E-value=0.24  Score=40.73  Aligned_cols=102  Identities=15%  Similarity=0.204  Sum_probs=68.5

Q ss_pred             HHHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE-EcCCCCccccccc
Q 019328          179 AYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS-LHPVLDKTTYHLI  254 (342)
Q Consensus       179 ~vA~~l~~a~g~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~-l~lplt~~t~~li  254 (342)
                      ..+++| ...|.+|++=.-.-..   .+++|.             ..++.-..+-++++.+||+|+ +..|+..+    .
T Consensus        21 ~~vkkl-~~~G~~V~vE~gaG~~a~fsD~~Y~-------------~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~   82 (194)
T d1l7da2          21 EVVKKL-VGLGFEVIVEQGAGVGASITDDALT-------------AAGATIASTAAQALSQADVVWKVQRPMTAE----E   82 (194)
T ss_dssp             HHHHHH-HHTTCEEEEETTTTGGGTCCHHHHH-------------HTTCEEESSHHHHHSSCSEEEEEECCCCGG----G
T ss_pred             HHHHHH-HHCCCEEEEEcCcccccCCCHHHHH-------------HhhhhcchhhhhhhhcccceeEecCCcccc----c
Confidence            456666 5789999874322111   011111             122333457789999999876 45665443    2


Q ss_pred             CHhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCC
Q 019328          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       255 ~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~  300 (342)
                      +.+.++.||+|+++|..--  .....++.++|.+.++...++|-..
T Consensus        83 ~~~ei~~lk~g~~li~~l~--p~~~~~~~~~l~~~~it~~a~e~ip  126 (194)
T d1l7da2          83 GTDEVALIKEGAVLMCHLG--ALTNRPVVEALTKRKITAYAMELMP  126 (194)
T ss_dssp             SCCGGGGSCTTCEEEEECC--GGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred             chhHhhhccCceEEEEecc--cccchhHHHHHHhcCceEEeeeccc
Confidence            3457899999999998653  4567789999999999999998774

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.24  E-value=0.026  Score=45.49  Aligned_cols=37  Identities=11%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcE-EEEEcCChh
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~-V~~~d~~~~  200 (342)
                      -.+|+|.|||-|..|-..|..| ...|++ |..+++...
T Consensus         2 ~~~~kVaIIGaGpaGl~aA~~l-~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           2 AYSAKIALLGAGPASISCASFL-ARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHH-HHTTCCCEEEEESSSS
T ss_pred             CCCCEEEEECChHHHHHHHHHH-HHCCCCeEEEEEecCc
Confidence            3589999999999999999998 578984 888987654

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=93.08  E-value=0.16  Score=39.99  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~--a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      .+|||||. |-.|+++.++|..  .+ ..++..+..+....         ....... .........+ .+.++++|+++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g---------k~~~~~~-~~~~~~~~~~-~~~~~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV---------PAPNFGK-DAGMLHDAFD-IESLKQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS---------BCCCSSS-CCCBCEETTC-HHHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc---------cccccCC-cceeeecccc-hhhhccccEEE
Confidence            47999997 9999999987632  12 24665544332110         0000000 0000111122 34578999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCc-----------cCCHHHHHHHHHcCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----------VIDEVALVEHLKQNP  290 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~-----------~vd~~aL~~aL~~g~  290 (342)
                      +|+|... +..+ -... ..-..++++|+.|.--           =++.+.+.+++++|+
T Consensus        70 ~alp~~~-s~~~-~~~l-~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          70 TCQGGSY-TEKV-YPAL-RQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             ECSCHHH-HHHH-HHHH-HHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             EecCchH-HHHH-hHHH-HHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            9999322 2222 1222 2223345677776422           145566777776654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.07  E-value=0.048  Score=45.73  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      ||+|.|||-|.-|-..|..| +..|.+|.+++.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~L-a~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKL-KIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            79999999999999999998 57899999998754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.96  E-value=0.051  Score=41.02  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      .+++.|||-|.||-++|..+ ..+|++|..+.+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l-~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVW-ARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHH-HHcCCceEEEEeec
Confidence            37899999999999999998 68999999887654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.93  E-value=0.031  Score=42.60  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+++.|||.|.||-++|..+ ..+|++|....+.+.
T Consensus        25 p~~~viiG~G~iglE~A~~~-~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVW-GRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHH-HhcCCeEEEEEEccc
Confidence            47999999999999999997 699999999987654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.86  E-value=0.14  Score=43.20  Aligned_cols=72  Identities=13%  Similarity=0.145  Sum_probs=43.7

Q ss_pred             CCCEEEEEccChHHHHHH----HHHHh-cCCcEEE-EEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhh--
Q 019328          164 KGQTVGVIGAGRIGSAYA----RMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA----~~l~~-a~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (342)
                      +-.+|||||+|.+|..++    ..+.+ .-++++. ++|++.... +.+.+.++       ..  ....+.+++++++  
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~-~~~~~~~~-------~~--~~~~~~~~~~l~~~~   84 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSS-LQTIEQLQ-------LK--HATGFDSLESFAQYK   84 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHH-HHHHHHTT-------CT--TCEEESCHHHHHHCT
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHH-HHHHHhcc-------cc--cceeecchhhccccc
Confidence            346899999998654443    33321 2367877 578887542 23323221       11  1223579999986  


Q ss_pred             cCCEEEEcCC
Q 019328          236 EADVISLHPV  245 (342)
Q Consensus       236 ~sDiV~l~lp  245 (342)
                      +-|+|++++|
T Consensus        85 ~iD~V~i~tp   94 (237)
T d2nvwa1          85 DIDMIVVSVK   94 (237)
T ss_dssp             TCSEEEECSC
T ss_pred             ccceeeccCC
Confidence            4678999988

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.86  E-value=0.059  Score=40.91  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ..+|++.|||-|.+|-++|..+ ...|.+|..+++...
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l-~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAF-AKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHh-hccceEEEEEEecCc
Confidence            4578999999999999999997 689999999977643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.05  Score=50.61  Aligned_cols=100  Identities=21%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhhH---HHHH--H-hhhh--------hhhccC-CCCCccc-
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR---LEKF--V-TAYG--------QFLKAN-GEQPVTW-  224 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~~---~~~~--~-~~~~--------~~~~~~-~~~~~~~-  224 (342)
                      .|++++|.|||+|.+|.++++.|+ ..|. ++..+|...-..   ..++  . +..|        ..+..- ....+.. 
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~-~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~  112 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLA-LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  112 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHH-TTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence            378999999999999999999985 5565 677888642100   0000  0 0000        000000 0000000 


Q ss_pred             --cccCCHHHHhhcCCEEEEcCCCCcccccccCHhHHccCC
Q 019328          225 --KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       225 --~~~~~l~ell~~sDiV~l~lplt~~t~~li~~~~l~~mk  263 (342)
                        .-....++++++.|+|+.++. +.+++..+|...+...|
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             eccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence              001223578899999998887 66788888887765544

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.046  Score=46.93  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=35.8

Q ss_pred             ccccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       160 g~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      |..|.||++-|-|- +.||+++|++|+ .-|++|+..|++.+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESG   42 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            45799999999997 789999999985 789999999998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.67  E-value=0.039  Score=42.02  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      +++.|||-|.||-++|..+ +.+|.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l-~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFL-AGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHH-hhcCCeEEEEEec
Confidence            5899999999999999997 6999999888764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.65  E-value=0.22  Score=39.63  Aligned_cols=39  Identities=21%  Similarity=0.257  Sum_probs=33.2

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhH
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATR  202 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~  202 (342)
                      -.|.+|.|+|.|.+|...++.+ +.+| .+|++.|+++++.
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~-~~~g~~~Vi~~~~~~~k~   66 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDKF   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCCEEEEECCCCcHHHHHHHH-HHcCCceEEeecCcHHHH
Confidence            3588999999999999999996 6787 4899999987654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.64  E-value=0.066  Score=40.61  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.5

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ++++.|||-|.+|-++|..| +..|.+|..+++.+.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l-~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATA-RTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHh-hcccceEEEEeeccc
Confidence            58999999999999999998 588999999987754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.57  E-value=0.05  Score=41.61  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      .+++.|||-|.||-++|..+ +.+|.+|..+.+.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~-~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVY-STLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHh-hcCCCEEEEEEeec
Confidence            47899999999999999997 69999999998765

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.23  Score=42.39  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|. +.||+++|++|+ .-|++|++.+++...
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~~   46 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVGN   46 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            499999999998 789999999985 789999999988653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.079  Score=45.63  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ..|+||++-|.|-+ .||+++|+.|+ ..|++|+..+|+.+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la-~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLA-KMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            45999999999984 59999999985 789999999998654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.34  E-value=0.32  Score=39.30  Aligned_cols=102  Identities=13%  Similarity=0.155  Sum_probs=55.4

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEc-CC-hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYD-LY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      ..+|||||. |-.|+++.+.|..-=.+++.+.. ++ ..+.....   +    ........ .......++.++.+|+++
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~---~----~~~~~~~~-~~~~~~~~~~~~~~Dvvf   76 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSV---F----PHLITQDL-PNLVAVKDADFSNVDAVF   76 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHH---C----GGGTTSCC-CCCBCGGGCCGGGCSEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccc---c----cccccccc-ccchhhhhhhhcccceee
Confidence            347999997 99999999998533345655443 22 21111110   0    00000000 011123345678999999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHH
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~  280 (342)
                      +++|...      ..+....+......|..+.+.-....
T Consensus        77 ~alp~~~------s~~~~~~l~~~~~~v~~~~~~~~~~~  109 (183)
T d2cvoa1          77 CCLPHGT------TQEIIKGLPQELKIVDLSADFRLRDI  109 (183)
T ss_dssp             ECCSSSH------HHHHHHTSCSSCEEEECSSTTTCSCH
T ss_pred             eccccch------HHHHHHHHHhcCcccccchhhhcccc
Confidence            9999543      23444555555566666555544333

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.31  E-value=0.052  Score=43.04  Aligned_cols=92  Identities=18%  Similarity=0.280  Sum_probs=53.0

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHh-cC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~-a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~  241 (342)
                      |-+|||||. |-.|+++.+.|.+ .| -.++.++..+...         +.......   .........++...++|+++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~---------G~~~~~~~---~~~~~~~~~~~~~~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA---------GKSLKFKD---QDITIEETTETAFEGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT---------TCEEEETT---EEEEEEECCTTTTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc---------cccccccC---Ccccccccchhhhhhhhhhh
Confidence            558999999 9999999999853 23 3455555432211         00000000   01111233455678899999


Q ss_pred             EcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +++|... +..    ...+..++|..+|+.|-
T Consensus        69 ~~~~~~~-s~~----~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          69 FSAGSST-SAK----YAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ECSCHHH-HHH----HHHHHHHTTCEEEECSS
T ss_pred             hccCccc-hhh----HHhhhccccceehhcCh
Confidence            9999322 222    12234467999999874

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.29  E-value=0.1  Score=42.12  Aligned_cols=95  Identities=19%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccc-cccCCHHHHh-----hc
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVL-----RE  236 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell-----~~  236 (342)
                      .|.+|-|.|. |.+|+..++. ++..|++|++.++++++.  ++....       +...... ......+.++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiql-ak~~Ga~vi~~~~~~~~~--~~~~~~-------Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKI--AYLKQI-------GFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEESSHHHH--HHHHHT-------TCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHH-HHccCCEEEEeCCCHHHH--HHHHhh-------hhhhhcccccccHHHHHHHHhhcCC
Confidence            5889999998 6699999987 589999999998876542  222222       2111111 1112233333     44


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG  274 (342)
                      .|+|+-++.  .++    -.+.++.++++..++.++..
T Consensus        99 vd~v~D~vG--~~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          99 YDCYFDNVG--GEF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             EEEEEESSC--HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred             CceeEEecC--chh----hhhhhhhccCCCeEEeecce
Confidence            899998886  332    25678999999999998754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.11  Score=41.51  Aligned_cols=38  Identities=13%  Similarity=0.035  Sum_probs=31.6

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhH
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~  202 (342)
                      .|.+|.|.|. |.+|..+++. ++.+|++|++.+++.++.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iql-ak~~Ga~Vi~~~~s~~k~   66 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQW-AKALGAKLIGTVGTAQKA   66 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHHTCEEEEEESSHHHH
T ss_pred             CCCEEEEEccccccchHHHHH-HHHhCCeEeecccchHHH
Confidence            4789999955 5599999998 489999999999987653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.21  E-value=0.093  Score=44.93  Aligned_cols=38  Identities=21%  Similarity=0.251  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcc-C--hHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA-G--RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~-G--~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .|+||++-|.|- |  .||.++|+.| ..-|++|+..+++.+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~l-a~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            388999999997 4  4999999998 488999999998753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.19  E-value=0.22  Score=39.41  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~  201 (342)
                      .|.+|.|.|.|.+|...++.+ +.+|+ +|++.++++.+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~a-k~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHH-HHHhcCceEEEcccHHH
Confidence            578999999999999999985 78886 67778877654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.11  E-value=0.065  Score=42.00  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=29.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCC--cEEEEEcCCh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQ  199 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g--~~V~~~d~~~  199 (342)
                      .||+|-|||-|.+|-++|..|+ ..+  .+|..+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~-~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIK-LADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHH-HcCCCCcEEEEECCC
Confidence            4899999999999999999974 444  6899998775

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.12  Score=41.55  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY  210 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~  210 (342)
                      +|||=|||+|||.+.|.+...-..+|.+.+.......-.+...|
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~y   46 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKY   46 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHC
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhhee
Confidence            79999999999999998654446888877654444333333333

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.90  E-value=0.073  Score=40.23  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=31.0

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ++++.|||-|.+|-++|..| ..+|.+|..+++.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNL-AEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHH-HHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHh-hcccceEEEEecccc
Confidence            46899999999999999998 689999999987653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.65  E-value=0.095  Score=44.98  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +|.||++-|-|-+ .||+++|++|+ .-|++|+..+|+.+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6999999999985 69999999985 789999999997654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.50  E-value=0.09  Score=44.77  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEccC---hHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~G---~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+|+||++-|-|.+   .||+++|++|+ .-|++|+..+++.+
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la-~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCcHH
Confidence            47999999999974   59999999985 77999998888754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.36  E-value=0.086  Score=39.32  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=30.9

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+++.|||-|.+|-++|..+ ..+|.+|..+++.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l-~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAY-RKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHH-hhcccceEEEeeecc
Confidence            37999999999999999997 689999999987643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.36  E-value=0.17  Score=42.85  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +|+||++-|-|- +.||+++|++|+ ..|++|+..+++.+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLA-ARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            478999999996 679999999984 789999999998653

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.21  Score=40.46  Aligned_cols=107  Identities=13%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             ccCCCEEEEEccC--hHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~l~gktvGIiG~G--~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+.|.+|++||=|  ++..+++..+ ..||+++....|..-...+............   .+.......++++.++.+|+
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~-~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~---~g~~~~~~~d~~~a~~~aDv   77 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRALAQQ---NGGNITLTEDVAKGVEGADF   77 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHH---TTCEEEEESCHHHHHTTCSE
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEEechHhhhhHHHHHHHHHHHHh---cCCceEEEechhhccccCCE
Confidence            5789999999965  6899999986 6899999999875211001100000000011   11122345789999999999


Q ss_pred             EEEcCCCCcc--------------cccccCHhHHccCCCCcEEEecC
Q 019328          240 ISLHPVLDKT--------------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~lplt~~--------------t~~li~~~~l~~mk~gailIN~s  272 (342)
                      |..-.-....              ....++.......+++++|.-+.
T Consensus        78 vyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          78 IYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             EEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             EEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            9875442110              01223444556678888887654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.27  E-value=0.081  Score=45.44  Aligned_cols=39  Identities=26%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLA-EEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999998 569999999984 789999999998653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.24  E-value=0.8  Score=35.92  Aligned_cols=39  Identities=26%  Similarity=0.237  Sum_probs=31.8

Q ss_pred             cCCCEEEEEccChHHHHHHHHHHhcCC-cEEEEEcCChhhH
Q 019328          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATR  202 (342)
Q Consensus       163 l~gktvGIiG~G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~  202 (342)
                      -.|.+|.|+|.|.+|...+..+ +.+| .+|++.|+++++.
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~-~~~g~~~Vi~~~~~~~rl   66 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDKF   66 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCCEEEEEecCCccchHHHHH-HHHhhchheeecchHHHH
Confidence            3588999999999999999986 4555 4799999987653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=91.21  E-value=0.13  Score=41.82  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ....+|+|.|||-|..|-+.|..| ...|++|..|++.+.
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~l-a~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINA-AARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHH-HhhccceEEEeccCc
Confidence            457789999999999999999997 588999999998753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.18  E-value=0.13  Score=39.56  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .++++.|||-|.+|-++|..+ ...|.+|..+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l-~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATA-IKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHH-HhhCcceeeeeeccc
Confidence            368999999999999999997 688999999988754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.05  E-value=0.14  Score=43.87  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +|+||++-|-|-+ .||+++|++|+ ..|++|+..|++.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6899999999985 69999999985 789999999998654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.03  E-value=0.22  Score=42.10  Aligned_cols=39  Identities=26%  Similarity=0.299  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|+.| ...|++|+..+|+.++
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELF-AKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            488999999997 56999999998 4789999999998654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.00  E-value=0.24  Score=39.67  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=45.6

Q ss_pred             CCEEEEEccChHHHHHH--HHHHh--cCC-cEEEEEcCChhhHH--HHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          165 GQTVGVIGAGRIGSAYA--RMMVE--GFK-MNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA--~~l~~--a~g-~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .-+|.|||.|..|...+  ..+++  .|. -++..+|..++...  ....+.+.    .....+.......+..|.++.|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~eal~~A   78 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI----REKAPDIEFAATTDPEEAFTDV   78 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHH----HHHCTTSEEEEESCHHHHHSSC
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHH----HHhCCCcceEecCChhhccCCC
Confidence            34799999999876532  33322  222 47999999875421  11111111    0111222333456899999999


Q ss_pred             CEEEEcCC
Q 019328          238 DVISLHPV  245 (342)
Q Consensus       238 DiV~l~lp  245 (342)
                      |+|+++.-
T Consensus        79 D~Vvitag   86 (167)
T d1u8xx1          79 DFVMAHIR   86 (167)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999964

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.96  E-value=0.27  Score=41.15  Aligned_cols=38  Identities=18%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      |+||++-|-|- +.||+++|+.| ...|++|+..+|+.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l-~~~Ga~V~~~~r~~~~   40 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVL-SQEGAEVTICARNEEL   40 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            78999999998 66999999998 4789999999998643

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=90.96  E-value=0.13  Score=43.79  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcc-Ch--HHHHHHHHHHhcCCcEEEEEcCChhhH
Q 019328          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       162 ~l~gktvGIiG~-G~--IG~~vA~~l~~a~g~~V~~~d~~~~~~  202 (342)
                      -|+||++-|.|. |.  ||+++|+.| ..-|++|+..+++..+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~l-a~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHH-HHTTCEEEEEECSCHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHH-HHcCCEEEEEeCChHHH
Confidence            489999999996 54  999999998 58899999988876543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.79  E-value=0.15  Score=41.43  Aligned_cols=96  Identities=13%  Similarity=0.114  Sum_probs=57.3

Q ss_pred             CCCEEEEE--ccChHHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhccCCCCCcccc---ccCC----HHH
Q 019328          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPVTWK---RASS----MDE  232 (342)
Q Consensus       164 ~gktvGIi--G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~----l~e  232 (342)
                      .|.++.|+  |.|.+|+...+. ++.+|++|++.-++.+...+  ++..+++       .......   ...+    ..+
T Consensus        28 ~g~~vli~~ga~g~vG~~aiql-Ak~~Ga~vI~~v~~~~~~~~~~~~~~~lG-------ad~vi~~~~~~~~~~~~~v~~   99 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQI-GKLLNFNSISVIRDRPNLDEVVASLKELG-------ATQVITEDQNNSREFGPTIKE   99 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHH-HHHHTCEEEEEECCCTTHHHHHHHHHHHT-------CSEEEEHHHHHCGGGHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHH-HhhcCCeEEEEEecccccchHHhhhhhcc-------ccEEEeccccchhHHHHHHHH
Confidence            47889998  679999999998 58999999987655432211  1112222       1110000   0111    122


Q ss_pred             Hh----hcCCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          233 VL----READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       233 ll----~~sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      +.    ...|+++-++. .+.     ....++.|+++..+|.++.
T Consensus       100 ~~~~~g~~vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         100 WIKQSGGEAKLALNCVG-GKS-----STGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HHHHHTCCEEEEEESSC-HHH-----HHHHHHTSCTTCEEEECCC
T ss_pred             HHhhccCCceEEEECCC-cch-----hhhhhhhhcCCcEEEEECC
Confidence            21    23788888765 221     2567889999999998863

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.32  E-value=0.42  Score=38.30  Aligned_cols=108  Identities=13%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCC-----hhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCE
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY-----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDi  239 (342)
                      .+||||| .|-.|+++.+.|..-=..++.....+     ..+.....    ...+  .+..........+.+.....+|+
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~dv   75 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDL----HPQL--KGIVDLPLQPMSDVRDFSADVDV   75 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHH----CGGG--TTTCCCBEEEESCGGGTCTTCCE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccccccccccc----cccc--ccccccccccchhhhhhhcccce
Confidence            4899999 59999999999843225666544211     11111110    0000  01111111222345556788999


Q ss_pred             EEEcCCCCcccccccCHhHHccCCCCcEEEecCCCccCCHHHHHH
Q 019328          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       240 V~l~lplt~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~  284 (342)
                      +++++|...  ..-+   .-...+.|..+|+.|.---.+....++
T Consensus        76 vf~alp~~~--s~~~---~~~~~~~~~~vIDlSadfRl~~~~~~~  115 (179)
T d2g17a1          76 VFLATAHEV--SHDL---APQFLQAGCVVFDLSGAFRVNDRAFYE  115 (179)
T ss_dssp             EEECSCHHH--HHHH---HHHHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred             eeccccchh--HHHH---hhhhhhcCceeeccccccccccccccc
Confidence            999999322  2111   222246789999998766554444443

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.30  E-value=0.25  Score=39.97  Aligned_cols=70  Identities=14%  Similarity=0.070  Sum_probs=43.6

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCC--ccccccCCHHHHhhcCCEE
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~sDiV  240 (342)
                      +||.|.| .|.||+.+++.|. .-|  ..|+...|+++.... ..         ....-  .......++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll-~~g~~v~v~~~~R~~~~~~~-~~---------~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGKEK-IG---------GEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHH-HTTTTCEEEEEESCHHHHHH-TT---------CCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHH-HCCCcEEEEEEcCCHHHHHh-cc---------CCcEEEEeeeccccccccccccceee
Confidence            6899999 6999999999984 445  567777777654211 00         01000  0011223556778999999


Q ss_pred             EEcCCC
Q 019328          241 SLHPVL  246 (342)
Q Consensus       241 ~l~lpl  246 (342)
                      +.+...
T Consensus        73 i~~a~~   78 (252)
T d2q46a1          73 VILTSA   78 (252)
T ss_dssp             EECCCC
T ss_pred             EEEEee
Confidence            877543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.068  Score=45.41  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~  198 (342)
                      ..|++++|.|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCc
Confidence            3599999999999999999999985 6676 78888865

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.19  E-value=0.14  Score=41.58  Aligned_cols=95  Identities=21%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhc-----
Q 019328          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----  236 (342)
Q Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~a~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  236 (342)
                      .+.+|-|.| .|.+|...++.+ +.+|++ |++.+.+.+.... ...+.       +..........++.+.+++     
T Consensus        30 ~~etVLI~gaaGgVG~~aiQla-k~~Ga~~vi~~~~~~e~~~~-l~~~~-------gad~vi~~~~~~~~~~~~~~~~~G  100 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIG-HLLGCSRVVGICGTQEKCLF-LTSEL-------GFDAAVNYKTGNVAEQLREACPGG  100 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHH-HHTTCSEEEEEESSHHHHHH-HHHHS-------CCSEEEETTSSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCchhhHHHHHHH-HHcCCcceecccchHHHHhh-hhhcc-------cceEEeeccchhHHHHHHHHhccC
Confidence            347899999 599999999984 899985 5556665443221 11111       2111222234567766655     


Q ss_pred             CCEEEEcCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 sDiV~l~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      .|+|+-++-  .+    .....++.++++..++.++.
T Consensus       101 vDvv~D~vG--g~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         101 VDVYFDNVG--GD----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             EEEEEESSC--HH----HHHHHHTTEEEEEEEEEC--
T ss_pred             ceEEEecCC--ch----hHHHHhhhccccccEEEecc
Confidence            999998875  22    23567899999999998863

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.64  Score=40.78  Aligned_cols=102  Identities=17%  Similarity=0.309  Sum_probs=63.1

Q ss_pred             ccCCCEEEEEcc---ChHHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcC
Q 019328          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~l~gktvGIiG~---G~IG~~vA~~l~~a~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (342)
                      .+.|++|+++|-   +++-.+.+..+ ..|| +++..+.|..-...+...+.    .+.   .........++++.++++
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~-~~~~~~~~~i~~P~~~~~~~~~~~~----~~~---~~~~~~~~~d~~~a~~~a  222 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILDM----LDE---KGIAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHHH----HHT---TTCCEEEESCGGGTTTTC
T ss_pred             CcccceEEEEeccccCcchHHHHHHH-HhccCceEEEeCCcccccchhcccc----ccc---ccceeeeeechhhhccCC
Confidence            488999999997   78888988876 5785 78888877432111111111    111   112233457899999999


Q ss_pred             CEEEEcCCCCcc----------cccccCHhHHccCCCCcEEEec
Q 019328          238 DVISLHPVLDKT----------TYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       238 DiV~l~lplt~~----------t~~li~~~~l~~mk~gailIN~  271 (342)
                      |+|....-....          ...-++.+.++.+|++++|.-+
T Consensus       223 Dvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHc  266 (310)
T d1tuga1         223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  266 (310)
T ss_dssp             SEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECC
T ss_pred             ceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeC
Confidence            999854221110          0123567777778888777644

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.02  E-value=0.11  Score=44.67  Aligned_cols=39  Identities=28%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|++|+ ..|++|+..+++.++
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFA-GFGAVIHTCARNEYE   44 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            699999999998 559999999984 789999999998654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=89.96  E-value=0.15  Score=40.26  Aligned_cols=62  Identities=24%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             CCCEEEEEcc---ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEE
Q 019328          164 KGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvGIiG~---G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV  240 (342)
                      .|.+|++||=   +++.++++..+ ..||+++....|..-...                 ........++++.++.+|+|
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~-~~~g~~~~i~~P~~~~~~-----------------~~~~~~~~~~~ea~~~aDvi   63 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQDE-----------------ENTFGTYVSMDEAVESSDVV   63 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH-HHcCCcccccCCchhhcc-----------------ccceeEEEechhccccCcee
Confidence            5899999996   68999999997 689999988877531100                 01122346899999999998


Q ss_pred             EEc
Q 019328          241 SLH  243 (342)
Q Consensus       241 ~l~  243 (342)
                      ..-
T Consensus        64 y~~   66 (151)
T d2at2a2          64 MLL   66 (151)
T ss_pred             eee
Confidence            764

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.90  E-value=0.15  Score=39.15  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=23.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY  194 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~  194 (342)
                      .+|||+|+ |+||+.+++.+ ..-|+++.+
T Consensus         1 mki~i~G~~GrMG~~i~~~~-~~~~~~l~~   29 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVF-SEKGHELVL   29 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-hcCCCeEEE
Confidence            37999996 99999999985 677887663

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.88  E-value=0.22  Score=42.47  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYV-REGARVAIADINLEA   41 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHH-HTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999998 789999999984 789999999998653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.82  E-value=0.46  Score=41.35  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|+.|+ .-|++|+..+|+.++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            599999999998 569999999985 789999999998654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.82  E-value=0.75  Score=36.85  Aligned_cols=114  Identities=18%  Similarity=0.116  Sum_probs=65.3

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhc--CCc----EEEEEcCChhhH-HHHHHhhhhhhhccCCC-CCccccccCCHHHHhh
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLR  235 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a--~g~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~  235 (342)
                      -.+|.|+|. |.||..++-+|+++  ||.    .+..+|...... .+....+    +.+... .........+..+.++
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~md----l~d~a~~~~~~~~~~~~~~~~~~   99 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----LEDSLYPLLREVSIGIDPYEVFE   99 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCTTEEEEEEESCHHHHTT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhh----hcccccccccCccccccchhhcc
Confidence            458999996 99999999887543  553    677778665322 1211111    111111 1112233568899999


Q ss_pred             cCCEEEEcC--CCCc-cccc-cc--C-------HhHHcc-CCCCcEEEecCCCccCCHHHHHH
Q 019328          236 EADVISLHP--VLDK-TTYH-LI--N-------KERLAT-MKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       236 ~sDiV~l~l--plt~-~t~~-li--~-------~~~l~~-mk~gailIN~sRG~~vd~~aL~~  284 (342)
                      .||+|++.-  |..| +|+. ++  |       .+.+.+ .+++++++=++.  .+|.-+++.
T Consensus       100 ~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         100 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             CCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            999999885  2222 1221 11  1       123333 466787776754  688777763

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=0.23  Score=44.08  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=27.2

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      |.+-|.| .|-||+.+++.| ...|.+|++.||..
T Consensus         2 K~vLITGatGfiGs~lv~~L-l~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFL-LEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCEEEEEECCC
Confidence            5677888 799999999998 46799999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.77  E-value=0.18  Score=41.27  Aligned_cols=37  Identities=38%  Similarity=0.334  Sum_probs=31.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCc-EEEEEcCChhh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~-~V~~~d~~~~~  201 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|+++.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~a-k~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-Hhhcccceeeecccchh
Confidence            478999999999999999885 77887 89999998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.75  E-value=0.31  Score=41.56  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             cCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      |.||++-|-|-+ .||+++|+.|+ .-|++|+..+++.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            789999999984 69999999985 789999999998754

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=89.74  E-value=1.1  Score=35.76  Aligned_cols=109  Identities=14%  Similarity=0.049  Sum_probs=67.7

Q ss_pred             CCeEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-CCccEEEecCCcC----ccHHHHHHh
Q 019328           14 GKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALIG-DKCDGVIGQLTED----WGETLFAAL   82 (342)
Q Consensus        14 ~~~kvl~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~----~~~~~~~~~   82 (342)
                      .++|||+...-++      ......|+..|+++....   ...+++++.+.+. .++|++.+++...    .-+++.+.|
T Consensus        36 r~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg---~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L  112 (168)
T d7reqa2          36 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGP---LFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKEL  112 (168)
T ss_dssp             SCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECC---TTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCC---CcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHH
Confidence            4678887643333      123457888999986532   2347888876554 3689887653322    234556667


Q ss_pred             hccCCc-eEEEcccccCccChhHHHhCCceEEcCCCCCchhHHH
Q 019328           83 SRAGGK-AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAE  125 (342)
Q Consensus        83 ~~l~~k-~i~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE  125 (342)
                      .+.|.. +....|--+-.-|.+..++.|+.-+..||.+...++.
T Consensus       113 ~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~  156 (168)
T d7reqa2         113 DKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAI  156 (168)
T ss_dssp             HHTTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHH
T ss_pred             HhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHH
Confidence            666543 3333332246778889999999988999975444443

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.62  E-value=0.39  Score=40.54  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhH
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~  202 (342)
                      .|.||++-|-|- +.||+++|+.|+ .-|++|+..|++..+.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~   42 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPE   42 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCchHH
Confidence            489999999998 569999999984 7899999999876543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.59  E-value=0.21  Score=42.48  Aligned_cols=87  Identities=14%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             CEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCc--cccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~sDiV~l  242 (342)
                      +||.|.| .|.||+.+++.| ..-|.+|++.+|............. ......+..-.  ......++...+..++.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            5699999 599999999997 4779999999886532110000000 00011111100  01112346678899999998


Q ss_pred             cCCCCccccccc
Q 019328          243 HPVLDKTTYHLI  254 (342)
Q Consensus       243 ~lplt~~t~~li  254 (342)
                      +.+......+..
T Consensus        82 ~~~~~~~~~~~~   93 (312)
T d1qyda_          82 ALAGGVLSHHIL   93 (312)
T ss_dssp             CCCCSSSSTTTT
T ss_pred             hhhhcccccchh
Confidence            887554433333

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.56  E-value=0.32  Score=41.38  Aligned_cols=38  Identities=18%  Similarity=0.032  Sum_probs=31.5

Q ss_pred             ccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      +|.||++-|-|-+ .||+++|+.|+ .-|++|+...++.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la-~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELV-KRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEECCcc
Confidence            5899999999996 69999999984 78998877755543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.52  E-value=0.28  Score=41.59  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|++|+ .-|++|+..+++.++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999998 669999999984 789999999998654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.48  E-value=0.23  Score=42.26  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +|+||++-|-|- +.||+++|++|+ ..|++|+..+++.++
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            689999999998 569999999984 789999999998754

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.48  E-value=0.31  Score=39.19  Aligned_cols=106  Identities=15%  Similarity=0.260  Sum_probs=56.1

Q ss_pred             EEEEEccChHHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcC
Q 019328          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~--a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~l  244 (342)
                      +|||=|||+|||.+.|.+..  ..+.+|.+.+-....+.-.+.-.|.+.   .+..+      .+..   ..-|.+++  
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~---hG~~~------~~v~---~~~~~l~i--   67 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSV---HKKFP------GKVE---YTENSLIV--   67 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTT---TCCCS------SCEE---ECSSEEEE--
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhcccc---ccccC------ceEE---EECCEEEE--
Confidence            79999999999999997542  345787776543333333333333211   11111      0111   12244433  


Q ss_pred             CCCcccccccCHhHHccCC---CCc-EEEecCCCccCCHHHHHHHHHcC
Q 019328          245 VLDKTTYHLINKERLATMK---KEA-ILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       245 plt~~t~~li~~~~l~~mk---~ga-ilIN~sRG~~vd~~aL~~aL~~g  289 (342)
                        +...-.+++....+.++   -|. ++|. ++|.--+.+.+..-|+.|
T Consensus        68 --ng~~I~~~~~~~p~~i~W~~~gvD~ViE-cTG~f~t~~~~~~hl~~G  113 (169)
T d1hdgo1          68 --DGKEIKVFAEPDPSKLPWKDLGVDFVIE-STGVFRNREKAELHLQAG  113 (169)
T ss_dssp             --TTEEEEEECCSSGGGSCHHHHTCCEEEE-CSSSCCBHHHHTHHHHTT
T ss_pred             --CCEEEEEEeCCChhhCCccccCCCEEEE-ecceeccccchhhhccCC
Confidence              22333334333333331   133 4444 478778888888888876

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.16  Score=43.11  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      |.||++-|.|- +.||+++|+.|+ .-|++|+..+++..+
T Consensus         4 l~gK~alITGas~GIG~aia~~la-~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFA-REGAKVIATDINESK   42 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            89999988876 899999999984 789999999998653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.36  E-value=0.3  Score=39.38  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             EEEEEccChHHHHHHHHHHh--cCCcEEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYD  196 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~--a~g~~V~~~d  196 (342)
                      +|||=|||+|||.+.|.+..  ....+|.+.+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            79999999999999997532  2236776654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.16  Score=42.98  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEccCh---HHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~G~---IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      -|.||++-|-|.+.   ||+++|+.| ..-|++|+..+++.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l-~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            38999999999864   999999998 478999998888754

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.30  E-value=0.21  Score=38.88  Aligned_cols=91  Identities=14%  Similarity=0.168  Sum_probs=49.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHh-cC-CcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          166 QTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~-a~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      .+|||||. |-.|+++.+.|.+ .+ ..++.....+...         |..+.... ....  ....-++.+..+|++++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~---------Gk~i~~~~-~~~~--~~~~~~~~~~~~d~vf~   70 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA---------GQRMGFAE-SSLR--VGDVDSFDFSSVGLAFF   70 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT---------TCEEEETT-EEEE--CEEGGGCCGGGCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC---------Ccceeecc-ccch--hccchhhhhccceEEEe
Confidence            47999998 9999999999742 23 3455544322111         00010000 0000  11112344688999999


Q ss_pred             cCCCCcccccccCHhHHccCCCCcEEEecCC
Q 019328          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~lplt~~t~~li~~~~l~~mk~gailIN~sR  273 (342)
                      ++|... +..+ -..   ..+.|..+|+.|.
T Consensus        71 a~p~~~-s~~~-~~~---~~~~g~~VID~Ss   96 (144)
T d2hjsa1          71 AAAAEV-SRAH-AER---ARAAGCSVIDLSG   96 (144)
T ss_dssp             CSCHHH-HHHH-HHH---HHHTTCEEEETTC
T ss_pred             cCCcch-hhhh-ccc---cccCCceEEeech
Confidence            999322 2221 122   2357899998764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=89.27  E-value=0.19  Score=42.51  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEccCh-HHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~G~-IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.||++-|.|-+. ||+++|+.| ..-|++|+..+|+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLF-AREGASLVAVDREERL   41 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            48899999999855 999999998 4889999999998764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.22  E-value=0.18  Score=43.01  Aligned_cols=40  Identities=23%  Similarity=0.208  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .+++||++-|-|-+ .||+++|++|+ ..|++|+..+++.++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            37999999999985 59999999984 789999999998654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.01  E-value=0.32  Score=40.40  Aligned_cols=39  Identities=23%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ..-.+|+|.|||-|..|-..|..| +..|++|..+++...
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l-~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVL-MESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHH-HHhccceeeEeeccc
Confidence            346899999999999999999997 578999999987643

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=88.89  E-value=0.19  Score=40.42  Aligned_cols=107  Identities=19%  Similarity=0.244  Sum_probs=55.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      +|||=|||+|||.+.|.+...-..+|.+. |+..+...-.+...|.+.   .+..+      .+..   ...+.+.+.  
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~---hG~~~------~~v~---~~~~~l~i~--   68 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDST---HGKFH------GTVK---AENGKLVIN--   68 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTT---TCSCS------SCEE---EETTEEEET--
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccc---cCCcC------CeEE---EECCEEEEC--
Confidence            79999999999999997543335677766 555544333343333221   11100      1111   123444331  


Q ss_pred             CCcccccccC---HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          246 LDKTTYHLIN---KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 lt~~t~~li~---~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                        .....+++   .+.+..=+-|.-+|==+.|.--+.+.+..-|++|
T Consensus        69 --~~~I~~~~~~~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~g  113 (169)
T d1u8fo1          69 --GNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG  113 (169)
T ss_dssp             --TEEEEEECCSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGT
T ss_pred             --CEEEEEEECCChhhCCccccCCCEEEEecceeccHHHHHHHHhcC
Confidence              12222332   2233322334444444577777777777667765

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=88.40  E-value=0.21  Score=41.09  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=30.0

Q ss_pred             CCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      -|+|.|||-|-.|-..|..| +.-|.+|.++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L-~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALIL-ARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            46899999999999999998 57799999999753

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.16  Score=43.59  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             CCCEEEEE--ccChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvGIi--G~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .||+|.||  |-+.||+++|+.|++..|++|+.++|+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48999999  789999999999865568999999998764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.32  E-value=0.16  Score=43.81  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEccC---hHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIiG~G---~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+|+||++-|-|.+   .||+.+|+.|+ ..|++|+..++...
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la-~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLA-AAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEEEHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCchh
Confidence            47999999999986   59999999984 78999998887643

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.28  E-value=0.58  Score=36.54  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=44.8

Q ss_pred             EEEEEc-cChHHHHHHHHHHhc--CC----cEEEEEcCChhhHH-HHHHhhhhhhhccCC-CCCccccccCCHHHHhhcC
Q 019328          167 TVGVIG-AGRIGSAYARMMVEG--FK----MNLIYYDLYQATRL-EKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       167 tvGIiG-~G~IG~~vA~~l~~a--~g----~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~s  237 (342)
                      +|.|+| .|.+|..+|-.|+.+  |+    ..+..+|....... +.....    ..... ..........+..+.+++|
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLME----LQDCALPLLKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhh----hcccccccccccccCcccccccCCc
Confidence            899999 599999999887421  23    36778887654321 111110    00111 1111122346788999999


Q ss_pred             CEEEEcC
Q 019328          238 DVISLHP  244 (342)
Q Consensus       238 DiV~l~l  244 (342)
                      |+|+++-
T Consensus        81 dvVVita   87 (154)
T d5mdha1          81 DVAILVG   87 (154)
T ss_dssp             SEEEECC
T ss_pred             eEEEEec
Confidence            9999984

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.27  E-value=0.25  Score=38.21  Aligned_cols=31  Identities=29%  Similarity=0.552  Sum_probs=24.4

Q ss_pred             EEEEEc-cChHHHHHHHHHHhcCCcEEE-EEcC
Q 019328          167 TVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDL  197 (342)
Q Consensus       167 tvGIiG-~G~IG~~vA~~l~~a~g~~V~-~~d~  197 (342)
                      +|+|+| .|+||+.+++.+.+.-++++. ++|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            699999 699999999986556678865 4454

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=88.22  E-value=0.36  Score=38.89  Aligned_cols=107  Identities=15%  Similarity=0.159  Sum_probs=56.3

Q ss_pred             EEEEEccChHHHHHHHHHHh---cCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEc
Q 019328          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~---a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~  243 (342)
                      +|||=|||+|||.+.|.+..   .-..+|.+.+.........+.-.|.+      ..+.   ...   ++-...|.+.+ 
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS------~hG~---~~~---~v~~~~~~l~i-   69 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDT------AHGK---FPG---TVSVNGSYMVV-   69 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEET------TTEE---CSS---CEEEETTEEEE-
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccc------cCCC---cCc---eEEeccceEEE-
Confidence            79999999999999998532   12467776654333333333333322      1110   000   11123444443 


Q ss_pred             CCCCcccccccCHh---HHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          244 PVLDKTTYHLINKE---RLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       244 lplt~~t~~li~~~---~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                         +.....++...   .+..=+-|.-+|==+.|.--+.+.+..-|+.|
T Consensus        70 ---~g~~i~i~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~G  115 (173)
T d1obfo1          70 ---NGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGG  115 (173)
T ss_dssp             ---TTEEEEEECCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHT
T ss_pred             ---CCEEEEEEecCCHHHCcccccccceEEEecccccCHHHHHHHhccC
Confidence               22333444333   33332334444444577777777888888876

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.13  E-value=0.27  Score=41.28  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      -|+|.|.|. |.||+.+++.| ..-|.+|++.+|...
T Consensus         3 kkKILVtGatG~iG~~l~~~L-~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEECCCc
Confidence            368999996 99999999998 467999999998754

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=87.83  E-value=0.25  Score=39.70  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lpl  246 (342)
                      +|||=|||+|||.+.|.+. .-+.+|.+.+.......-.+.-.|+      ...+.   ...+   +-...|.+++    
T Consensus         2 kigINGfGRIGR~~~R~l~-~~~i~iv~INd~~~~~~~ayLl~yD------S~hG~---~~~~---v~~~~~~l~i----   64 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILH-SRGVEVALINDLTDNKTLAHLLKYD------SIYHR---FPGE---VAYDDQYLYV----   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSCHHHHHHHHHCC------TTTCS---CSSC---EEECSSEEEE----
T ss_pred             EEEEECCcHHHHHHHHHHh-cCCCEEEEECCCcchhhhhheeecc------cccCc---cccc---cccccceeEe----
Confidence            7999999999999998863 4466776665433333333333332      11110   0011   1123455544    


Q ss_pred             CcccccccCH---hHHccCCCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          247 DKTTYHLINK---ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       247 t~~t~~li~~---~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                      +.....+...   +.+..-+-|.-+|==+.|.-.+.+.+..-|+.|
T Consensus        65 ~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g  110 (168)
T d2g82a1          65 DGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG  110 (168)
T ss_dssp             TTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred             cceeEEEEecCChHHCcccccCCceeEeccccccchHHhhhhhccc
Confidence            1222333332   333333345666666788888888888888865

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=87.63  E-value=0.24  Score=39.94  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=26.0

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      +|||=|||+|||.+.|.+...-..+|.+.+....
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~d   36 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTD   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCCC
Confidence            7999999999999999864444678777754333

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=87.61  E-value=0.19  Score=42.72  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      ..|+|.|||-|..|-..|..|+ ..|.+|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~-~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLA-GAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHH-HHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            4579999999999999999985 6699999999764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.56  E-value=0.32  Score=41.19  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.||++-|.|- +.||+++|+.| ...|++|+.++++.+.
T Consensus         7 ~lenKvalITGas~GIG~a~a~~l-a~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKML-AKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHH-TTTSSEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            688999999998 67999999998 5889999999998654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=87.53  E-value=0.14  Score=41.32  Aligned_cols=43  Identities=23%  Similarity=0.422  Sum_probs=29.7

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAY  210 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~~~~~~~~~~~  210 (342)
                      +|||=|||+|||.+.|.+. ..+.+|.+. |+..+...-.+.-.|
T Consensus         2 kIgINGfGRIGR~~~R~~~-~~~~~ivaINd~~~~~~~~~yLlky   45 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAAL-EMGAQVVAVNDPFIALEYMVYMFKY   45 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHH-HHTCCEEEEECTTSCHHHHHHHHHC
T ss_pred             eEEEECCcHHHHHHHHHHH-hCCCcEEEECCCCcCHHHHHHHHhc
Confidence            7999999999999999864 456777666 455554333333333

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=87.51  E-value=0.27  Score=41.90  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhH
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~  202 (342)
                      |+||++-|-|- +.||+++|++|+ .-|++|+..+++....
T Consensus         2 L~gK~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~   41 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAE   41 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHH
Confidence            78999999887 559999999985 7899999999875443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=87.45  E-value=0.32  Score=40.35  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      ..++|.|||.|.-|-.+|..|+ ..|.+|.++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~-~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLR-DAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            4678999999999999999984 6799999999864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.38  E-value=0.32  Score=41.86  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|+.|+ .-|++|+..+|+.+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFV-AEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999997 799999999985 789999999998654

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.08  E-value=0.3  Score=39.12  Aligned_cols=107  Identities=16%  Similarity=0.203  Sum_probs=56.0

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEEc-CChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lp  245 (342)
                      +|||=|||+|||.+.|.+...-..+|.+.+ +..+...-.+.-.|.+      ..+.   ..   .++-..-|.+.+-  
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS------~hG~---~~---~~v~~~~~~l~i~--   67 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDS------VHGQ---FP---CEVTHADGFLLIG--   67 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCT------TTCS---CS---SCEEEETTEEEES--
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhccc------cccc---ce---eeeccCCceEEec--
Confidence            799999999999999986434467887764 5554433344333332      1110   00   0111223333331  


Q ss_pred             CCcccccccCHhHHccC---CCCcEEEecCCCccCCHHHHHHHHHcC
Q 019328          246 LDKTTYHLINKERLATM---KKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 lt~~t~~li~~~~l~~m---k~gailIN~sRG~~vd~~aL~~aL~~g  289 (342)
                        .....++...-...+   +-|.-+|==+.|.-.+.+.+..-|+.|
T Consensus        68 --~~~I~i~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g  112 (166)
T d2b4ro1          68 --EKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGG  112 (166)
T ss_dssp             --SCEEEEECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTT
T ss_pred             --CcEEEEEeCCChHHccccccCCCEEEEecccccchhhhhhhhccC
Confidence              111222222211211   224444444577777888888888866

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.04  E-value=0.3  Score=40.14  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             EEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChh
Q 019328          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQA  200 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~  200 (342)
                      +|+|||-|.-|-..|+.|++ .+|.+|.+|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            79999999999999987653 58999999998753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.03  E-value=0.36  Score=40.50  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=29.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      .+|.|.|- |-||+.+++.| ..-|.+|++.|++.
T Consensus         2 MKIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEeechh
Confidence            46899997 99999999998 68899999999863

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=86.82  E-value=0.65  Score=39.20  Aligned_cols=39  Identities=21%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|++|+ ..|++|+..+++.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999996 679999999984 789999999998654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.74  E-value=0.27  Score=41.89  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|++|+ .-|++|+..+++.++
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999998 679999999984 889999999987653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.66  E-value=0.34  Score=42.49  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      +.|+|.|||.|.-|-.+|..|+ .-|.+|++++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~-k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLA-EKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-TTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHH-hCCCCEEEEECCCC
Confidence            3689999999999999999985 66999999987754

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.53  E-value=0.46  Score=41.64  Aligned_cols=79  Identities=16%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh-hhhhccCCCCCccccccCCHHHHhhcCCEEEE
Q 019328          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l  242 (342)
                      -|||.|+|- |.||+.+++.| .+-|.+|.+..|++........... +..+....   . ......++.++..+|.+++
T Consensus         3 kktIlVtGatG~iG~~lv~~L-l~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD---~-~d~~~~~~~a~~~~~~~~~   77 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGP---L-LNNVPLMDTLFEGAHLAFI   77 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESC---C-TTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHH-HhCCCeEEEEECCcchhhhhhhcccCCCEEEEee---C-CCcHHHHHHHhcCCceEEe
Confidence            589999995 99999999998 4678999988876543211110000 00000000   0 0011235678899999988


Q ss_pred             cCCCCc
Q 019328          243 HPVLDK  248 (342)
Q Consensus       243 ~lplt~  248 (342)
                      ..+...
T Consensus        78 ~~~~~~   83 (350)
T d1xgka_          78 NTTSQA   83 (350)
T ss_dssp             CCCSTT
T ss_pred             eccccc
Confidence            776543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.26  Score=40.99  Aligned_cols=78  Identities=13%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCC
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (342)
                      ...+|+|-|.|. |.||+.+++.|. .-|  .+|++++|++..........    +..   .........++.+.++.+|
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll-~~g~~~~v~~~~R~~~~~~~~~~~~----i~~---~~~D~~~~~~~~~~~~~~d   82 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEEAYKN----VNQ---EVVDFEKLDDYASAFQGHD   82 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSGGGGG----CEE---EECCGGGGGGGGGGGSSCS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHH-hCCCCCEEEEEecChhhhcccccce----eee---eeecccccccccccccccc
Confidence            357889999996 999999999874 334  48999998754321111000    000   0001112346677789999


Q ss_pred             EEEEcCCCC
Q 019328          239 VISLHPVLD  247 (342)
Q Consensus       239 iV~l~lplt  247 (342)
                      +++.++..+
T Consensus        83 ~vi~~~~~~   91 (232)
T d2bkaa1          83 VGFCCLGTT   91 (232)
T ss_dssp             EEEECCCCC
T ss_pred             ccccccccc
Confidence            999887543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.39  E-value=0.37  Score=40.79  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      +.||++-|-|- +.||+++|+.|+ ..|++|+..+++.++
T Consensus         1 i~GKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            46999999998 669999999985 789999999998754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.31  E-value=0.25  Score=36.17  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             cccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCC
Q 019328          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       161 ~~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~  198 (342)
                      .+.+||+|.|||.|.-|..+|.-| ...+.++++..++
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l-~~~ak~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHL-TPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHH-TTTSCSSEEEECT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHH-HHhcCEEEEEEec
Confidence            578999999999999999999997 4666666555444

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.31  E-value=0.33  Score=42.47  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.5

Q ss_pred             cCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .+||+|-|.| .|-||+.+++.| ...|.+|++++|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            4689999999 599999999998 578999999998764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.30  E-value=0.42  Score=40.50  Aligned_cols=38  Identities=18%  Similarity=0.098  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       161 ~~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      +.|.||++-|-|- +.||+++|+.| ..-|++|+..+++.
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~l-a~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGSS   40 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEcCCC
Confidence            4699999999987 55999999998 47899998754443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.25  E-value=0.29  Score=41.94  Aligned_cols=39  Identities=18%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|.|- +.||+++|+.|+ ..|++|+..+|+.+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFA-QEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999997 679999999984 789999999998654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=85.96  E-value=0.41  Score=40.85  Aligned_cols=39  Identities=21%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.||++-|-|- +.||+.+|++|+ .-|++|+..|++.+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999996 669999999984 789999999998654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.83  E-value=0.98  Score=35.11  Aligned_cols=111  Identities=23%  Similarity=0.245  Sum_probs=57.8

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhc--CCc----EEEEEcCChhhH-HHHHHhhhhhhhccCC-CCCccccccCCHHHHhhc
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a--~g~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (342)
                      .+|.|+|. |.+|+.+|-.|+.+  ++.    ....++...... .......    +.... ..........+..+.++.
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME----LEDCAFPLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh----hhccccccccccccCCchhhhccc
Confidence            38999996 99999999987421  231    233333332211 1111110    11111 111122234678889999


Q ss_pred             CCEEEEcC--CCCcc-cc-ccc--CH-------hHHcc-CCCCcEEEecCCCccCCHHHH
Q 019328          237 ADVISLHP--VLDKT-TY-HLI--NK-------ERLAT-MKKEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       237 sDiV~l~l--plt~~-t~-~li--~~-------~~l~~-mk~gailIN~sRG~~vd~~aL  282 (342)
                      ||+|+++-  |-.|. ++ .++  |.       ..+.+ .+++++++.++.  .+|.-..
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            99999985  32222 22 122  11       12333 456888888864  5665443

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=85.82  E-value=0.48  Score=40.40  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=25.2

Q ss_pred             ccCCCEEEEEccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      ...|++|++||+-    +..+++ +.-|+++++++++++
T Consensus       119 ~~~g~kV~vIG~~----P~v~~l-~~~~~~~~VlE~~p~  152 (251)
T d2h1qa1         119 EVKGKKVGVVGHF----PHLESL-LEPICDLSILEWSPE  152 (251)
T ss_dssp             TTTTSEEEEESCC----TTHHHH-HTTTSEEEEEESSCC
T ss_pred             ccCCCEEEEEecc----hhHHHH-HhcCCcEEEEeCCCC
Confidence            3579999999885    344444 466789999998864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.66  E-value=0.34  Score=35.84  Aligned_cols=35  Identities=11%  Similarity=0.038  Sum_probs=28.2

Q ss_pred             CCEEEEEccChHHHHHHHHHH--hcCCcEEEEEcCCh
Q 019328          165 GQTVGVIGAGRIGSAYARMMV--EGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~--~a~g~~V~~~d~~~  199 (342)
                      .+++.|||-|.+|-++|..++  +..|.+|..+.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            479999999999999997642  34588998887754

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.33  E-value=0.48  Score=40.08  Aligned_cols=39  Identities=28%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.||++-|-|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la-~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFA-REGALVALCDLRPEG   41 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSTTH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            388999999994 789999999984 789999999988653

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.28  E-value=0.43  Score=40.48  Aligned_cols=39  Identities=21%  Similarity=0.427  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|++|+ .-|++|+..|++.+.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~~   42 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAA   42 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999996 569999999984 789999999997653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.09  E-value=0.32  Score=40.94  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEccC-hHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~G-~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|.||++-|-|-+ .||+++|++|+ ..|++|+..+|+...
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLA-ADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCcch
Confidence            5899999999985 69999999984 789999999987643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.23  E-value=0.41  Score=41.07  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      |.||++-|-|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         2 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   40 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDR   40 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            78999999998 569999999985 789999999998653

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.08  E-value=2.9  Score=33.80  Aligned_cols=99  Identities=10%  Similarity=0.046  Sum_probs=64.1

Q ss_pred             HHHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhccCCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019328          179 AYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (342)
Q Consensus       179 ~vA~~l~~a~g~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sDiV~l~lplt~~t~~li~  255 (342)
                      ..+++| ...|.+|++=.-.-..   ..+.|.+             .+..-..+.+++. +||+|+..-|.++       
T Consensus        21 ~~vkkl-~~~G~~V~VE~gaG~~a~fsD~~Y~~-------------aGa~i~~~~~~~~-~~diilkv~~p~~-------   78 (193)
T d1pjca2          21 SSVRTL-VEAGHTVFIETQAGIGAGFADQDYVQ-------------AGAQVVPSAKDAW-SREMVVKVKEPLP-------   78 (193)
T ss_dssp             HHHHHH-HTTTCEEEEETTTTGGGTCCHHHHHH-------------HTCEEESSHHHHH-TSSEEECSSCCCG-------
T ss_pred             HHHHHH-HHCCCEEEEEcCcccccCCCHHHHHh-------------hcceeeecccccc-ccceEEEeccCCH-------
Confidence            345666 5789999875332211   0111111             1222345666776 5899876655333       


Q ss_pred             HhHHccCCCCcEEEecCCCccCCHHHHHHHHHcCCccEEEeecCCCC
Q 019328          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (342)
Q Consensus       256 ~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E  302 (342)
                       +.++.||+|.++|-.---  .....+.++|.+.++...++|..+..
T Consensus        79 -~e~~~lk~~~~li~~l~p--~~~~ell~~l~~~~it~~s~E~ipr~  122 (193)
T d1pjca2          79 -AEYDLMQKDQLLFTYLHL--AAARELTEQLMRVGLTAIAYETVELP  122 (193)
T ss_dssp             -GGGGGCCTTCEEEECCCG--GGCHHHHHHHHHHTCEEEEGGGCCCT
T ss_pred             -HHHHhhhcCceEEEecCc--ccchHHHHHHHHcCCEEEEeeecccc
Confidence             468999999999977543  34568999999999999999877554

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.66  E-value=0.59  Score=37.50  Aligned_cols=39  Identities=21%  Similarity=0.090  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEc-cChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG-~G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      ...|.+|-|.| -|.+|....+. ++.+|++|++..++.++
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQl-ak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSM-LAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCTTC
T ss_pred             CCCCCEEEEEeccchHHHHHHHH-HHHcCCceEEecCchHH
Confidence            45688999999 59999999998 48999999998877654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.99  E-value=0.5  Score=40.13  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      .|+||++-|-|- +.||+++|+.|+ .-|++|+..+|+.+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFA-REGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            488999999987 789999999985 789999999998654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.91  E-value=0.65  Score=38.63  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .||++-|.|- |.||+++|+.| ..-|++|...|+...
T Consensus         1 egK~vlITGas~GIG~a~a~~l-~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAF-RARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            4899999998 67999999998 578999999887654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.65  E-value=0.29  Score=39.43  Aligned_cols=39  Identities=18%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             cCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChhhH
Q 019328          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       163 l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~~  202 (342)
                      ..+.+|.|.|- |.+|....+.+ +.+|++|++..+++++.
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQlA-k~~Ga~Via~~~~~~k~   69 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVALL-HKLGYQVVAVSGRESTH   69 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCGGGH
T ss_pred             CCCCcEEEEEccccchHHHHHHH-HHcCCCeEEEecchhHH
Confidence            34556777665 99999999984 89999999998887653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.55  E-value=0.31  Score=36.93  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=26.0

Q ss_pred             EEEEEccChHHHHHHHHHHhcCCcEEEEE-cCChh
Q 019328          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQA  200 (342)
Q Consensus       167 tvGIiG~G~IG~~vA~~l~~a~g~~V~~~-d~~~~  200 (342)
                      ++.|+|.|.+|+.+++.+...-|+++.++ |..+.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            79999999999999986533457887765 65544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=82.50  E-value=0.45  Score=39.30  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             CEEEEEccChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      .+|.|||-|.-|-..|..| +..|.+|.+++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L-~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHL-RSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHH-HTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCCEEEEecCC
Confidence            3699999999999999998 46799999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.43  E-value=0.79  Score=35.30  Aligned_cols=39  Identities=8%  Similarity=0.003  Sum_probs=32.5

Q ss_pred             cccCCCEEEEE--ccChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          161 NLLKGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~l~gktvGIi--G~G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      +..-++.+-|+  |-|.||-++|..| ..+|++|....+.+.
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~l-a~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKL-ATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHH-HHTTCEEEEEESSCT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHH-HHcCCeEEEEecCCc
Confidence            34557788887  8899999999998 689999999987653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.07  E-value=0.55  Score=39.71  Aligned_cols=35  Identities=31%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             CEEEEE-cc-ChHHHHHHHHHHhcCCcEEEEEcCChhh
Q 019328          166 QTVGVI-GA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       166 ktvGIi-G~-G~IG~~vA~~l~~a~g~~V~~~d~~~~~  201 (342)
                      |+|.+| |- +.||+++|+.|+ ..|++|+..+|+.+.
T Consensus         1 KKValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            456544 65 569999999985 789999999998654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.03  E-value=0.72  Score=39.80  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=28.1

Q ss_pred             CEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCCh
Q 019328          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       166 ktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~  199 (342)
                      |+|.|.|- |-||+.+++.| ...|.+|+++|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L-~~~g~~V~~~d~~~   35 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKL-MMDGHEVTVVDNFF   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCC
Confidence            68889986 99999999998 46799999998643

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=81.71  E-value=0.71  Score=40.16  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=28.8

Q ss_pred             CEEEEEccChHHHHHHHHHHh-cCCcEEEEEcCChh
Q 019328          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQA  200 (342)
Q Consensus       166 ktvGIiG~G~IG~~vA~~l~~-a~g~~V~~~d~~~~  200 (342)
                      |+|+|||.|.-|-.+|..|++ +.+.+|.+++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            789999999999999988742 34569999998753

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.36  E-value=1.1  Score=38.82  Aligned_cols=38  Identities=32%  Similarity=0.373  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcc-ChHHHHHHHHHHhcCCcEEEEEcCChh
Q 019328          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~l~gktvGIiG~-G~IG~~vA~~l~~a~g~~V~~~d~~~~  200 (342)
                      .|.||++-|-|- +.||+++|+.|+ .-|++|+..|+..+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la-~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFA-ERGALVVVNDLGGD   42 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECCCBC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCch
Confidence            689999999998 569999999984 88999999987643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.01  E-value=0.78  Score=34.83  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             CCEEEEEccChHHHHHHHHHH---hcCCcEEEEEcCChh
Q 019328          165 GQTVGVIGAGRIGSAYARMMV---EGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvGIiG~G~IG~~vA~~l~---~a~g~~V~~~d~~~~  200 (342)
                      ++++.|||-|.+|-++|..|+   +.+|.+|..+++...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            579999999999999997653   357899998887543