Citrus Sinensis ID: 019329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MSGSETAVNVMTSQPPASIQSMRLAFSADGTAVYKPITATSPTYQPSGAGGDGAIPQAQGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLALVPSPSSVTTATGGTGSGLSSPGGGPLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESKSSHRMESLPVPPKLAPGGQPAGQCSPPSRGTLSESSGGPGSPLNHSTGACNNNHLPQGMATGIPWK
Secondary Structure (PSIPRED)
cccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHcccccEEEEEEccEEEEEEEEcccccccEEEEEEEEEEEEEEEEEEcccccccccccccEEEEEEcccccEEEEEcccccEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHHEccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSGSETAVNVmtsqppasiQSMRLAFSadgtavykpitatsptyqpsgaggdgaipqaqglnvmnmgsgsepmkrkrgrprkygpdgtmslalvpspssvttatggtgsglsspgggplspdsikksrgrppgsgsgkkhQLEAlgsagvgftphVITVKAGEDVSSKIMSFSQNGPRAVCILSangaisnvTLRQAatsggtvtyEGRFEILSLSGsfllsessgqrsrtgglsvslsgpdgrvlggsvaglltaatPVQVVVGSFLadgrkesksshrmeslpvppklapggqpagqcsppsrgtlsessggpgsplnhstgacnnnhlpqgmatgipwk
Flexible Loop (DISEMBL)
MSGSETAVNVMTSQPPASIQSMRLAFSADGTAVYKPITATSPTYQPSGAGGDGAIPQAQGLNVMNmgsgsepmkrkrgRPRKYGPDGTMSLALVPSPSSVTTATGgtgsglsspgggpLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADgrkesksshrmeslpvppklapggqPAGQCSPPSRGTLSESSGGPGSPLNHSTGACNnnhlpqgmatgipwk
Low Complexity Region (SEG)
MSGSETAVNVMTSQPPASIQSMRLAFSADGTAVYKPITATSPTYQPSGAGGDGAIPQAQGLNVMNMGSGSEpmkrkrgrprkygpdgTMSLAlvpspssvttatggtgsglsspgggplspDSIkksrgrppgsgsgkkHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRfeilslsgsfllsessgQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESKSSHRMESLPVPPKLAPGGQPAGQCSPPSRGTLSEssggpgspLNHSTGACNNNHLPQGMATGIPWK
Disordered region (IsUnstruct)
********************************VY****************************************************************************************************************SAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLL**********************RVLGGSVAGLLTAATPVQVVVGSFLA*************************************************************************
Disordered Region (DISOPRED)
*********************************************************************************KYGPD*************************************************************AGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSES*****RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFL**************************************************************************
Disordered Region (DISEMBL)
***************PASIQSMRLAFSADGTAVYKPITATSPTYQPSGAGGDGAIPQAQGLNVMNMGS****************PDGTMSLALVPS********************************************QLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLL***************SLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLAD**************PVPPKL****************************LNHSTGACNNNHLPQGMATGIPWK
Disordered Region (DISPRO)
****************************DGTAVYKPITATSP***P*GAGG**********NV**********************DGTMSLALV*******************************************KKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGR**********************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGSETAVNVMTSQPPASIQSMRLAFSADGTAVYKPITATSPTYQPSGAGGDGAIPQAQGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLALVPSPSSVTTATGGTGSGLSSPGGGPLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESKSSHRMESLPVPPKLAPGGQPAGQCSPPSRGTLSESSGGPGSPLNHSTGACNNNHLPQGMATGIPWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.409	0.450	0.388	3e-10

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 125 KKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILS 184
           K+ RGRPPGS +  K  +     +      HV+ V  G D+   + ++++   R V +L 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLG 145

Query: 185 ANGAISNVTLRQAAT---------SGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLS 235
            NG +SNVTLRQ  T          GG VT  GRFEILSL+G+ L   +       GGLS
Sbjct: 146 GNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAP---PGAGGLS 202

Query: 236 VSLSGPDGRVLGGSVAGLLTAATPVQVVVGSF 267
           + L+G  G+V+GGSV   L A+ PV ++  SF
Sbjct: 203 IFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
225457646	353	PREDICTED: uncharacterized protein LOC10	0.967	0.937	0.706	1e-109
147809818	390	hypothetical protein VITISV_030792 [Viti	0.967	0.848	0.703	1e-108
255539322	374	DNA binding protein, putative [Ricinus c	0.985	0.901	0.638	1e-103
449455639	351	PREDICTED: uncharacterized protein LOC10	0.950	0.925	0.644	5e-97
449522157	364	PREDICTED: uncharacterized LOC101211767	0.959	0.901	0.619	3e-94
449458061	364	PREDICTED: uncharacterized protein LOC10	0.959	0.901	0.616	9e-94
448872670	362	putative AT-hook DNA-binding protein [El	0.967	0.914	0.659	4e-90
223943393	388	unknown [Zea mays] gi|414869457|tpg|DAA4	0.959	0.845	0.587	6e-89
223947063	376	unknown [Zea mays] gi|223947407|gb|ACN27	0.959	0.872	0.587	6e-89
224061839	277	predicted protein [Populus trichocarpa]	0.698	0.862	0.731	1e-88

>gi|225457646|ref|XP_002275328.1| PREDICTED: uncharacterized protein LOC100263332 [Vitis vinifera] gi|297745600|emb|CBI40765.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 257/364 (70%), Positives = 279/364 (76%), Gaps = 33/364 (9%)

Query: 1   MSGSETAV-------------NVMTSQPPASIQSMRLAFSADGTAVYKPITATSPTYQPS 47
           MSGSET +             N + SQP   IQ+MRLAFS DG AVYKP++ TSP YQ S
Sbjct: 1   MSGSETGIMTTREPFSMGLQKNAVPSQP--VIQNMRLAFSPDGAAVYKPVSGTSPPYQSS 58

Query: 48  GAGGD------GAIPQAQGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLALVPSPSSVT 101
           G  G         IP   GLN MNMGS  EP+KRKRGRPRKYGPDGTM+LAL P+PS V 
Sbjct: 59  GGTGGDGSTGGAIIPH--GLN-MNMGS--EPLKRKRGRPRKYGPDGTMALALSPAPSGVN 113

Query: 102 TATGGTGSGLSSPGGGPLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKA 161
            +  G          G  SP S+KK+RGRPPGS   KK Q+EALGSAGVGFTPHVITVKA
Sbjct: 114 VSQSGGAFSSPPASAGSASPSSLKKARGRPPGSS--KKQQMEALGSAGVGFTPHVITVKA 171

Query: 162 GEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLL 221
           GEDVSSKIMSFSQ+GPRAVCILSANGAISNVTLRQ ATSGGTVTYEGRFEILSLSGSFLL
Sbjct: 172 GEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLL 231

Query: 222 SESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESKSSHRM 281
           SE+ GQRSRTGGLSVSLSGPDGRVLGG VAGLLTAA+PVQVVVGSF+ADGRKESKS+ ++
Sbjct: 232 SENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSASQV 291

Query: 282 ESLPVPPKLAP---GGQPAGQCSPPSRGTLSESSGGPGSPLNHSTGACNNNHLPQGMATG 338
           E    PPK+AP   GG   G  SPPSRGTLSESSGGPGSPLN STGACNN++ P GM T 
Sbjct: 292 EPSSAPPKIAPVGGGGGVTGTSSPPSRGTLSESSGGPGSPLNQSTGACNNSN-PPGM-TS 349

Query: 339 IPWK 342
           IPWK
Sbjct: 350 IPWK 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809818|emb|CAN64876.1| hypothetical protein VITISV_030792 [Vitis vinifera]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/364 (70%), Positives = 279/364 (76%), Gaps = 33/364 (9%)

Query: 1   MSGSETAVNVMTSQPPAS-------------IQSMRLAFSADGTAVYKPITATSPTYQPS 47
           MSGSET +  MT++ P S             IQ+MRLAFS DG AVYKP++ TSP YQ S
Sbjct: 1   MSGSETGI--MTTREPFSMGLQKNAVPSQPVIQNMRLAFSPDGAAVYKPVSGTSPPYQSS 58

Query: 48  GAGGD------GAIPQAQGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLALVPSPSSVT 101
           G  G         IP   GLN MNMGS  EP+KRKRGRPRKYGPDGTM+LAL P+PS V 
Sbjct: 59  GGTGGDGSTGGAIIPH--GLN-MNMGS--EPLKRKRGRPRKYGPDGTMALALSPAPSGVN 113

Query: 102 TATGGTGSGLSSPGGGPLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKA 161
            +  G          G  SP S+KK+RGRPPGS   KK Q+EALGSAGVGFTPHVITVKA
Sbjct: 114 VSQSGGAFSSPPASAGSASPSSLKKARGRPPGSS--KKQQMEALGSAGVGFTPHVITVKA 171

Query: 162 GEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLL 221
           GEDVSSKIMSFSQ+GPRAVCILSANGAISNVTLRQ ATSGGTVTYEGRFEILSLSGSFLL
Sbjct: 172 GEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLL 231

Query: 222 SESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESKSSHRM 281
           SE+ GQRSRTGGLSVSLSGPDGRVLGG VAGLLTAA+PVQVVVGSF+ADGRKESKS+ ++
Sbjct: 232 SENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSASQV 291

Query: 282 ESLPVPPKLAP---GGQPAGQCSPPSRGTLSESSGGPGSPLNHSTGACNNNHLPQGMATG 338
           E    PPK+AP   GG   G  SPPSRGTLSESSGGPGSPLN STGACNN++ P GM T 
Sbjct: 292 EPSSAPPKIAPVGGGGGVTGTSSPPSRGTLSESSGGPGSPLNQSTGACNNSN-PPGM-TS 349

Query: 339 IPWK 342
           IPW 
Sbjct: 350 IPWN 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539322|ref|XP_002510726.1| DNA binding protein, putative [Ricinus communis] gi|223551427|gb|EEF52913.1| DNA binding protein, putative [Ricinus communis]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/379 (63%), Positives = 274/379 (72%), Gaps = 42/379 (11%)

Query: 1   MSGSETAVNVMTSQPPAS-------IQSMRLAFSADGTAVYKPITA--TSPTYQPS-GAG 50
           MSGSET V   T++ P         IQ+MRLAF ADG++VYKP+T    SP+YQPS  A 
Sbjct: 1   MSGSETGVMTSTTREPFGVVSPQPVIQNMRLAFGADGSSVYKPMTTATNSPSYQPSPSAA 60

Query: 51  GDGAIPQ--AQGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLALVPSPSSVTTATGGTG 108
             G   +  + G+NV NMGSG++ MKRKRGRPRKYGPDGTM+LALV +P SV       G
Sbjct: 61  SPGGFVEGGSLGINV-NMGSGNDAMKRKRGRPRKYGPDGTMALALVSAPQSVGITQPAGG 119

Query: 109 SGLSSPGG------GP-------------------LSPDSIKKSRGRPPGSGSGKKHQLE 143
            G S+P        GP                   +SP  IKK RGRPPGS   KK QLE
Sbjct: 120 GGFSTPTSAAATSVGPSTTTIAANPSLPSGSGGGSVSPTGIKKGRGRPPGSN--KKQQLE 177

Query: 144 ALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGT 203
           ALGSAG GFTPH+ITVKAGEDVSSKIMSFSQ+GPRAVCILSANGAISNVTLRQ ATSGG+
Sbjct: 178 ALGSAGFGFTPHIITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGS 237

Query: 204 VTYEGRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVV 263
           VTYEGRFEILSLSGSFL SE+ GQRSRTGGLSVSLSGPDGRVLGG VAGLL AA+PVQVV
Sbjct: 238 VTYEGRFEILSLSGSFLPSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLLAASPVQVV 297

Query: 264 VGSFLADGRKESKSSHRMESLPVPPKLAPGGQPAGQCSPPSRGTLSESSGGPGSPLNHST 323
           V SF++D RKE KS + +E L    +L P     G  SPPSRGT SESSGGPGSPLN ST
Sbjct: 298 VASFISDDRKELKSPNHLEPLSAMNRLTPVMGTTGPSSPPSRGTFSESSGGPGSPLNQST 357

Query: 324 GACNNNHLPQGMATGIPWK 342
           GACNN++L QG+++ +PWK
Sbjct: 358 GACNNSNL-QGISS-MPWK 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455639|ref|XP_004145559.1| PREDICTED: uncharacterized protein LOC101207513 [Cucumis sativus] gi|449522960|ref|XP_004168493.1| PREDICTED: uncharacterized LOC101207513 [Cucumis sativus]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 237/368 (64%), Positives = 263/368 (71%), Gaps = 43/368 (11%)

Query: 1   MSGSETAV-------------NVMTSQPPASIQSMRLAFSADGTAVYKPITATSPTYQPS 47
           MSGSET V             N + SQ P  +QSM L F ADG  VYKP+   SPTYQ S
Sbjct: 1   MSGSETGVISSGEHFTIGLQKNSVPSQQPV-MQSMHLPFGADG--VYKPVATASPTYQSS 57

Query: 48  ------GAGGDGAIPQAQGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLALVPSPSSVT 101
                  AG DG+   A     +NM S SEP+KRKRGRPRKYGPDG+M++A    P++ T
Sbjct: 58  SVGVAGNAGADGSARDA----FVNMNSQSEPVKRKRGRPRKYGPDGSMAVAPAVRPAAAT 113

Query: 102 TATGGTG-SGLSSPGGG-PLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITV 159
            ++GG   S  ++P  G   SP S+KK RGRPPGS S KKH L+   SAGVGFTPHVITV
Sbjct: 114 QSSGGFSPSPTAAPQSGRSASPTSLKKPRGRPPGS-STKKHHLDTSESAGVGFTPHVITV 172

Query: 160 KAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSF 219
           KAGEDVSSKIMSFSQNGPRAVCIL+ANGAISNVTLRQ A SGGTVTYEGRFEILSLSGS+
Sbjct: 173 KAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSY 232

Query: 220 LLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLAD-GRKESKSS 278
           LLSE+ GQRSRTGGLSVSLSGPDGRVLGG VAGLLTAA+PVQVVVGSF+ D G KE +  
Sbjct: 233 LLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHKELRQV 292

Query: 279 HRMESLPV--PPKLAP--GGQPAGQCSPPSRGTLSESSGGPGSPLNHSTGACNNNHLPQG 334
           +++E  PV  P KLAP   G   G  SPPSRGTLSESSGGPGSP N S GACNNN     
Sbjct: 293 NQIEQPPVSAPHKLAPIRAGM-TGASSPPSRGTLSESSGGPGSPFNQSAGACNNNT---- 347

Query: 335 MATGIPWK 342
               IPWK
Sbjct: 348 ----IPWK 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522157|ref|XP_004168094.1| PREDICTED: uncharacterized LOC101211767 [Cucumis sativus]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 234/378 (61%), Positives = 267/378 (70%), Gaps = 50/378 (13%)

Query: 1   MSGSETAVNVMTSQPPASI-------------QSMRLAFSADGTAVYKPIT-ATSPTYQP 46
           MSGSET V  +TS+ P  +             Q+MRLAF ADGT  YKP+T +TSP+YQ 
Sbjct: 1   MSGSETGV--ITSREPFGVGVQNSSLHSQSGTQNMRLAFGADGTG-YKPVTPSTSPSYQS 57

Query: 47  SGAGGDGAIPQA--------------QGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLA 92
           S AG  G                    G N+ ++GS  E +KRKRGRPRKYGPDG+M+LA
Sbjct: 58  SMAGVSGNAGIEGSAGGGGGGGSMLPHGFNINSVGS--EQIKRKRGRPRKYGPDGSMALA 115

Query: 93  LVPSPSSVTTATGGTG----SGLSSPGGGPL-SPDSIKKSRGRPPGSGSGKKHQLEALGS 147
           L   P S      GTG    S +++     L SP+S KK++GRP   GS KK QLEALGS
Sbjct: 116 LGSGPPS------GTGCFPPSNMANSASEALGSPNSSKKTKGRP--LGSKKKQQLEALGS 167

Query: 148 AGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYE 207
           AG+GFTPHVI VKAGEDVSSKIMSFSQNGPRA+CILSANG+ISNVTLRQ ATSGGTVTYE
Sbjct: 168 AGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGSISNVTLRQPATSGGTVTYE 227

Query: 208 GRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSF 267
           GRFEILSLSGSFLLSE+ GQRSRTGGLSVSLSGPDGRVLGGSVAGLLTA +PVQVVVGSF
Sbjct: 228 GRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTALSPVQVVVGSF 287

Query: 268 LADGRKESKSSHRMESLPVPPKL--APGGQPAGQCSPPSRGTLSESSGG-PGSPLNHSTG 324
           +ADG KE K + + E     P L  A  G   G  S PS GTLSESS G P SPLN+S+G
Sbjct: 288 IADGNKEPKPARQNELTTALPMLNTAGFGHLTGGASSPSHGTLSESSDGSPDSPLNNSSG 347

Query: 325 ACNNNHLPQGMATGIPWK 342
            CNN++ PQGM +G+PWK
Sbjct: 348 GCNNSNHPQGM-SGMPWK 364

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458061|ref|XP_004146766.1| PREDICTED: uncharacterized protein LOC101211767 [Cucumis sativus]

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 233/378 (61%), Positives = 267/378 (70%), Gaps = 50/378 (13%)

Query: 1   MSGSETAVNVMTSQPPASI-------------QSMRLAFSADGTAVYKPIT-ATSPTYQP 46
           MSGSET V  +TS+ P  +             Q+MRLAF ADGT  YKP+T +TSP+YQ 
Sbjct: 1   MSGSETGV--ITSREPFGVGVQNSSLHSQSGTQNMRLAFGADGTG-YKPVTPSTSPSYQS 57

Query: 47  SGAGGDGAIPQA--------------QGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLA 92
           S AG  G                    G N+ ++GS  E +KRKRGRPRKYGPDG+M+LA
Sbjct: 58  SMAGVSGNAGIEGSAGGGGGGGSMLPHGFNINSVGS--EQIKRKRGRPRKYGPDGSMALA 115

Query: 93  LVPSPSSVTTATGGTG----SGLSSPGGGPL-SPDSIKKSRGRPPGSGSGKKHQLEALGS 147
           L   P S      GTG    S +++     L SP+S KK++GRP   GS KK QLEALGS
Sbjct: 116 LGSGPPS------GTGCFPPSNMANSASEALGSPNSSKKTKGRP--LGSKKKQQLEALGS 167

Query: 148 AGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYE 207
           AG+GFTPHVI VKAGEDVSSKIMSFSQNGPRA+CILSANG+ISNVTLRQ ATSGGTVTYE
Sbjct: 168 AGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGSISNVTLRQPATSGGTVTYE 227

Query: 208 GRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSF 267
           GRF+ILSLSGSFLLSE+ GQRSRTGGLSVSLSGPDGRVLGGSVAGLLTA +PVQVVVGSF
Sbjct: 228 GRFQILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTALSPVQVVVGSF 287

Query: 268 LADGRKESKSSHRMESLPVPPKL--APGGQPAGQCSPPSRGTLSESSGG-PGSPLNHSTG 324
           +ADG KE K + + E     P L  A  G   G  S PS GTLSESS G P SPLN+S+G
Sbjct: 288 IADGNKEPKPARQNELTTALPMLNTAGFGHLTGGASSPSHGTLSESSDGSPDSPLNNSSG 347

Query: 325 ACNNNHLPQGMATGIPWK 342
            CNN++ PQGM +G+PWK
Sbjct: 348 GCNNSNHPQGM-SGMPWK 364

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|448872670|gb|AGE46020.1| putative AT-hook DNA-binding protein [Elaeis guineensis]

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 240/364 (65%), Positives = 268/364 (73%), Gaps = 33/364 (9%)

Query: 1   MSGSETAVNV------MTSQPPASIQSMRLAFSADGTAVYKPITATSPTYQPSGAGGDG- 53
           MSG E+  NV      + SQP  S+QSMRLAF+ DGTA+YKPIT +SP   P   GG   
Sbjct: 10  MSGRES-FNVGMQKSPVQSQP--SMQSMRLAFAPDGTAIYKPITTSSPPPPPYQGGGGAG 66

Query: 54  ----------AIPQAQGLNVMNMGSGSEPMKRKRGRPRKYGPDGTMSLALVPSPSSVTTA 103
                     A     GLN+ N+G   EP+KRKRGRPRKYGPDGTMSLAL     +   +
Sbjct: 67  STGGGDGPSPAAITPHGLNI-NVG---EPVKRKRGRPRKYGPDGTMSLALTTVSPTAAVS 122

Query: 104 TGGTGSGLSSPGGG----PLSPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITV 159
            G  G   SS G G      S +++KK+RGRPPGSG  KK QL ALGSAG+GFTPHVITV
Sbjct: 123 PGSGGFSPSSAGAGNPASSASAEAMKKARGRPPGSG--KKQQLAALGSAGIGFTPHVITV 180

Query: 160 KAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSF 219
           KAGEDVSSKIMSFSQ+GPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSF
Sbjct: 181 KAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSF 240

Query: 220 LLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESKSSH 279
           LLSES GQRSRTGGLSVSL+GPDGRVLGG VAGLLTAA+PVQVVVGSF+ADG+KE K + 
Sbjct: 241 LLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGKKEPKHTA 300

Query: 280 RMESLPVPPKLAPGGQPAGQCSPPSRGTL-SESSGGPGSPLNHSTGACNNNHLPQGMATG 338
             +    P KLA GG  AG  SPPSRGTL   S GGPGSPLN STG CNN++  QG++  
Sbjct: 301 PSDPTLAPGKLAAGGAAAGANSPPSRGTLSESSGGGPGSPLNQSTGTCNNSNQ-QGLSN- 358

Query: 339 IPWK 342
           +PWK
Sbjct: 359 MPWK 362

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223943393|gb|ACN25780.1| unknown [Zea mays] gi|414869457|tpg|DAA48014.1| TPA: AT-hook protein 1 [Zea mays]

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 208/354 (58%), Positives = 250/354 (70%), Gaps = 26/354 (7%)

Query: 12  TSQPPAS--IQSMRLAFSADGTAVYKPI--TATSPTYQPSGAGGDGAIPQAQ---GLNVM 64
            S PPAS  +QS+R+A+++DGTAV+ P+  +A +P+YQP GA    ++  A    G    
Sbjct: 38  VSGPPASAAMQSVRMAYTSDGTAVFAPMRSSAATPSYQPQGAAHGASMSAATIIGGNGAA 97

Query: 65  NMGSGSEPM-KRKRGRPRKYGPDGTMSLALVPSPSSVTTATGGTGS-GLSSPGGGPL--- 119
              S  EP+ K+KRGRPRKYGPDG+M+LALVP  ++  + T G GS G  SP G  L   
Sbjct: 98  AAPSMGEPVPKKKRGRPRKYGPDGSMALALVPVSAATGSPTTGQGSSGPFSPAGSNLTNS 157

Query: 120 ----SPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQN 175
               SPD  KK RGRP   GS  K +++A GS+G GFTPHVITV+AGEDVSSKIMSFSQ+
Sbjct: 158 LLVASPDGFKK-RGRP--KGSTNKPRMDAAGSSGAGFTPHVITVQAGEDVSSKIMSFSQH 214

Query: 176 GPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLS 235
           GPRAVC+LSANGAISNVTLRQ ATSGGTVTYEGRFEILSLSGSFLL E  GQRSRTGGLS
Sbjct: 215 GPRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLVEDGGQRSRTGGLS 274

Query: 236 VSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESKSSHRMESLPVPPKLAPGGQ 295
           VSL+GPDGRVLGG VAGLL AA+PVQ+V+GSF + G+KE+K        P P K+AP   
Sbjct: 275 VSLAGPDGRVLGGGVAGLLVAASPVQIVLGSFNSGGKKEAKKHAPSGPTPAPLKVAPPTT 334

Query: 296 PA---GQCSPPSR-GTLSESSGGPGS---PLNHSTGACNNNHLPQGMATGIPWK 342
                   SPPSR GTLSESSGG GS   PL+    A ++N  P  +++ +PWK
Sbjct: 335 TRMGPNSSSPPSRGGTLSESSGGAGSPPPPLHQGMAASSSNDQPPFLSSIMPWK 388

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223947063|gb|ACN27615.1| unknown [Zea mays] gi|223947407|gb|ACN27787.1| unknown [Zea mays] gi|224029909|gb|ACN34030.1| unknown [Zea mays] gi|414869452|tpg|DAA48009.1| TPA: AT-hook protein 1 isoform 1 [Zea mays] gi|414869453|tpg|DAA48010.1| TPA: AT-hook protein 1 isoform 2 [Zea mays] gi|414869454|tpg|DAA48011.1| TPA: AT-hook protein 1 isoform 3 [Zea mays] gi|414869455|tpg|DAA48012.1| TPA: AT-hook protein 1 isoform 4 [Zea mays] gi|414869456|tpg|DAA48013.1| TPA: AT-hook protein 1 isoform 5 [Zea mays]

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 208/354 (58%), Positives = 250/354 (70%), Gaps = 26/354 (7%)

Query: 12  TSQPPAS--IQSMRLAFSADGTAVYKPI--TATSPTYQPSGAGGDGAIPQAQ---GLNVM 64
            S PPAS  +QS+R+A+++DGTAV+ P+  +A +P+YQP GA    ++  A    G    
Sbjct: 26  VSGPPASAAMQSVRMAYTSDGTAVFAPMRSSAATPSYQPQGAAHGASMSAATIIGGNGAA 85

Query: 65  NMGSGSEPM-KRKRGRPRKYGPDGTMSLALVPSPSSVTTATGGTGS-GLSSPGGGPL--- 119
              S  EP+ K+KRGRPRKYGPDG+M+LALVP  ++  + T G GS G  SP G  L   
Sbjct: 86  AAPSMGEPVPKKKRGRPRKYGPDGSMALALVPVSAATGSPTTGQGSSGPFSPAGSNLTNS 145

Query: 120 ----SPDSIKKSRGRPPGSGSGKKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQN 175
               SPD  KK RGRP   GS  K +++A GS+G GFTPHVITV+AGEDVSSKIMSFSQ+
Sbjct: 146 LLVASPDGFKK-RGRP--KGSTNKPRMDAAGSSGAGFTPHVITVQAGEDVSSKIMSFSQH 202

Query: 176 GPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLS 235
           GPRAVC+LSANGAISNVTLRQ ATSGGTVTYEGRFEILSLSGSFLL E  GQRSRTGGLS
Sbjct: 203 GPRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLVEDGGQRSRTGGLS 262

Query: 236 VSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESKSSHRMESLPVPPKLAPGGQ 295
           VSL+GPDGRVLGG VAGLL AA+PVQ+V+GSF + G+KE+K        P P K+AP   
Sbjct: 263 VSLAGPDGRVLGGGVAGLLVAASPVQIVLGSFNSGGKKEAKKHAPSGPTPAPLKVAPPTT 322

Query: 296 PA---GQCSPPSR-GTLSESSGGPGS---PLNHSTGACNNNHLPQGMATGIPWK 342
                   SPPSR GTLSESSGG GS   PL+    A ++N  P  +++ +PWK
Sbjct: 323 TRMGPNSSSPPSRGGTLSESSGGAGSPPPPLHQGMAASSSNDQPPFLSSIMPWK 376

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061839|ref|XP_002300624.1| predicted protein [Populus trichocarpa] gi|222842350|gb|EEE79897.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/253 (73%), Positives = 205/253 (81%), Gaps = 14/253 (5%)

Query: 93  LVPSPSSVTTATGGTGSGLSSPG---GGPLSPDSIKKSRGRPPGSGSGKKHQLEALGSAG 149
           LVP+PS       G+  G++ P    GG +SP  +KK+RGRPPGS   KK QL+ALGSAG
Sbjct: 36  LVPTPSP------GSDVGVAGPAVALGGSVSPTGVKKARGRPPGSS--KKQQLDALGSAG 87

Query: 150 VGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGR 209
           +GFTPHVITVKAGEDVSSKIMSFSQ+GPRAVCILSANGAISNVTLRQ ATSGGTVTYEGR
Sbjct: 88  IGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQQATSGGTVTYEGR 147

Query: 210 FEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLA 269
           FEIL+LSGS+L SE+ GQRSR+GGLSV LSGPDGRVLGGSVAGLL AA PVQVVV SF+A
Sbjct: 148 FEILALSGSYLPSENGGQRSRSGGLSVCLSGPDGRVLGGSVAGLLMAAAPVQVVVSSFIA 207

Query: 270 DGRKESKSSHRMESLPVPPKLAPGGQPAGQCSPPSRGTLSESSGGPGSPLNHSTGACNNN 329
           DGRK SKS++ ME      KL P G   G  SPPSRGTLSESSGGPGSPLN STGACNNN
Sbjct: 208 DGRKVSKSANHMEPSSATSKLPPTGGSTGVSSPPSRGTLSESSGGPGSPLNQSTGACNNN 267

Query: 330 HLPQGMATGIPWK 342
             PQG++  +PWK
Sbjct: 268 --PQGISN-MPWK 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.573	0.558	0.587	8.8e-59
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.581	0.453	0.446	5.1e-39
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.467	0.503	0.520	1.6e-38
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.409	0.393	0.577	7e-38
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.435	0.446	0.518	2.7e-36
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.438	0.371	0.540	9.2e-36
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.374	0.305	0.604	2.4e-35
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.394	0.387	0.514	3.1e-35
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.444	0.393	0.519	6.5e-35
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.464	0.393	0.435	1.8e-30

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 121/206 (58%), Positives = 138/206 (66%)

Query:   141 QLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATS 200
             +L+ALGS G+GFTPHV+TV AGEDVSSKIM+ + NGPRAVC+LSANGAISNVTLRQ+ATS
Sbjct:   152 KLQALGSTGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATS 211

Query:   201 GGTVTYEGRXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPV 260
             GGTVTYEGR                 QRSRTGGLSVSLS PDG VLGGSVAGLL AA+PV
Sbjct:   212 GGTVTYEGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSVAGLLIAASPV 271

Query:   261 QVVVGSFLADGRKESKSSHRMESL--PVPPKLAPGGQPAGQCSPPSRGTLSEXX--XXXX 316
             Q+VVGSFL DG KE K       L  PV P++AP        SP SRGT+SE        
Sbjct:   272 QIVVGSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPSSPQSRGTMSESSCGGGHG 331

Query:   317 XXLNHSTGACNNNHLPQGMATGIPWK 342
               ++ STG   NN +       +PWK
Sbjct:   332 SPIHQSTGGPYNNTI------NMPWK 351

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
 Identities = 95/213 (44%), Positives = 124/213 (58%)

Query:   141 QLEALG-SAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAAT 199
             QL+ALG + GVGFTPHVI VK GED+++KI++F+  GPRA+CILSA GA++NV LRQA  
Sbjct:   209 QLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSATGAVTNVMLRQANN 268

Query:   200 SG--GTVTYEGRXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAA 257
             S   GTV YEGR                   ++TG LSVSL+G +GR++GG V G+L A 
Sbjct:   269 SNPTGTVKYEGRFEIISLSGSFLNSESNGTVTKTGNLSVSLAGHEGRIVGGCVDGMLVAG 328

Query:   258 TPVQVVVGSFLADGRKESKSSHRMESLPVPPKLAPG-----GQPAGQCSPPSRGTLSEXX 312
             + VQV+VGSF+ DGRK+ +S+ R ++ P P   AP      G   G  SP S+G      
Sbjct:   329 SQVQVIVGSFVPDGRKQKQSAGRAQNTPEPAS-APANMLSFGGVGGPGSPRSQGQQHSSE 387

Query:   313 XXXXXXLN---H--STGACNNNHLPQGMATGIP 340
                    N   H  S    +NNH   G +T  P
Sbjct:   388 SSEENESNSPLHRRSNNNNSNNHGIFGNSTPQP 420

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 88/169 (52%), Positives = 108/169 (63%)

Query:   146 GSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVT 205
             G  G  FTPHVITV  GED++ +I+SFSQ GPRA+CILSANG ISNVTLRQ  + GGT+T
Sbjct:   117 GGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLT 176

Query:   206 YEGRXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVG 265
             YEGR                  + R+GG+SVSL+GPDGRV+GG VAGLL AATP+QVVVG
Sbjct:   177 YEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVG 236

Query:   266 SFLADGRKESKS--SHRMESLP-----VPPKLAPGGQPAGQCSP--PSR 305
             SF+   +++ +     R+E  P     VPP  +P    A   SP  P R
Sbjct:   237 SFITSDQQDHQKPRKQRVEHAPAAVMSVPPPPSPPPPAASVFSPTNPDR 285

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 86/149 (57%), Positives = 103/149 (69%)

Query:   140 HQLEALG-----SAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTL 194
             HQ+E LG     S G  FTPH+ITV  GEDV+ KI+SFSQ GPR++C+LSANG IS+VTL
Sbjct:   153 HQVENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTL 212

Query:   195 RQAATSGGTVTYEGRXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLL 254
             RQ  +SGGT+TYEGR                  RSRTGG+SVSL+ PDGRV+GG +AGLL
Sbjct:   213 RQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLL 272

Query:   255 TAATPVQVVVGSFLA----DGRKESKSSH 279
              AA+PVQVVVGSFLA      +K  K+ H
Sbjct:   273 VAASPVQVVVGSFLAGTDHQDQKPKKNKH 301

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 82/158 (51%), Positives = 105/158 (66%)

Query:   140 HQLEALG-----SAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTL 194
             +Q+E LG     SA   FTPH+ITV AGEDV+ +I+SFSQ G  A+C+L ANG +S+VTL
Sbjct:   133 YQVENLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTL 192

Query:   195 RQAATSGGTVTYEGRXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLL 254
             RQ  +SGGT+TYEGR                  RSRTGG+SVSL+ PDGRV+GG VAGLL
Sbjct:   193 RQPDSSGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGGVAGLL 252

Query:   255 TAATPVQVVVGSFLADGRKESKS----SHRMESLPVPP 288
              AATP+QVVVG+FL    ++ ++    +H   S P+ P
Sbjct:   253 VAATPIQVVVGTFLGGTNQQEQTPKPHNHNFMSSPLMP 290

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 86/159 (54%), Positives = 107/159 (67%)

Query:   142 LEALGSA---GVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAA 198
             L  +G+A   G  FTPHV+ V AGEDV+ KIM+FSQ G RA+CILSANG ISNVTLRQ+ 
Sbjct:   153 LAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSM 212

Query:   199 TSGGTVTYEGRXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAAT 258
             TSGGT+TYEGR                  RSR GG+SV L+GPDGRV GG +AGL  AA 
Sbjct:   213 TSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPDGRVFGGGLAGLFLAAG 272

Query:   259 PVQVVVGSFLADGRKESKSSHRMESLPVPPKLAPGGQPA 297
             PVQV+VG+F+A G+++S+    +E L    +L  G QP+
Sbjct:   273 PVQVMVGTFIA-GQEQSQ----LE-LAKERRLRFGAQPS 305

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 78/129 (60%), Positives = 93/129 (72%)

Query:   152 FTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRXX 211
             FTPHV+TV AGEDV+ KIM+FSQ G RA+CILSANG ISNVTLRQ+ TSGGT+TYEG   
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGHFE 237

Query:   212 XXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADG 271
                             RSR GG+SVSL+G DGRV GG +AGL  AA PVQV+VGSF+A G
Sbjct:   238 ILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQVMVGSFIA-G 296

Query:   272 RKESKSSHR 280
             ++ES+   +
Sbjct:   297 QEESQQQQQ 305

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 70/136 (51%), Positives = 91/136 (66%)

Query:   147 SAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTY 206
             S+G+ FTPHVI V  GED++SK+++FSQ GPRA+C+LSA+GA+S  TL Q + S G + Y
Sbjct:   157 SSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKY 216

Query:   207 EGRXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGS 266
             EGR                  R+RTG LSVSL+ PDGRV+GG++ G L AA+PVQV+VGS
Sbjct:   217 EGRFEILALSTSYIVATDGSFRNRTGNLSVSLASPDGRVIGGAIGGPLIAASPVQVIVGS 276

Query:   267 FLADGRKESKSSHRME 282
             F+    K  KS  R E
Sbjct:   277 FIWAAPK-IKSKKREE 291

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 80/154 (51%), Positives = 103/154 (66%)

Query:   141 QLEALG-SAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAAT 199
             QL+ALG ++GVGFTPHVI V  GED++SK+M+FS  G R +CILSA+GA+S V LRQA+ 
Sbjct:   168 QLDALGGTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSASGAVSRVMLRQASH 227

Query:   200 SGGTVTYEGRXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATP 259
             S G VTYEGR                   +R+G LSV+L+GPDG ++GGSV G L AAT 
Sbjct:   228 SSGIVTYEGRFEIITLSGSVLNYEVNGSTNRSGNLSVALAGPDGGIVGGSVVGNLVAATQ 287

Query:   260 VQVVVGSFLADGRKESKSSHRMESLPVP-PKLAP 292
             VQV+VGSF+A+ +K  +SS  +     P P  AP
Sbjct:   288 VQVIVGSFVAEAKKPKQSSVNIARGQNPEPASAP 321

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 71/163 (43%), Positives = 93/163 (57%)

Query:   149 GVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEG 208
             G  FT H  TV  GEDV+ K+M +SQ G RA+CILSA G+ISNVTL Q   +GGT+TYEG
Sbjct:   157 GANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTLTYEG 216

Query:   209 RXXXXXXXXXXXXXXXXXQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFL 268
             R                  + R GG+S+SL+GP+G + GG +AG+L AA PVQVV+GSF+
Sbjct:   217 RFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFI 276

Query:   269 A--DGRKESKSSHRMESLPVPPKLAPGGQPAGQCSPPSRGTLS 309
                   +  K   R+     PP+  P   P  Q   P   T++
Sbjct:   277 VMHQAEQNQKKKPRVMEAFAPPQ--PQAPPQLQQQQPPTFTIT 317

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002932001 SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (353 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	7e-39
cd11378	113	cd11378, DUF296, Domain of unknown function found	1e-34
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	8e-06

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  133 bits (338), Expect = 7e-39
 Identities = 53/125 (42%), Positives = 70/125 (56%), Gaps = 9/125 (7%)

Query: 152 FTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQ---AATSGGTVTYEG 208
             PHV+ ++ GED+   + +F++       +LS  GA+SNVTLRQ    A S G VT EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 209 RFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVA-GLLTAATPVQVVVGSF 267
           RFEILSLSG+            +G L VSL+ PDG+V+GG +A G + A   V V   SF
Sbjct: 61  RFEILSLSGTISP-----GGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 268 LADGR 272
               R
Sbjct: 116 ENARR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  122 bits (308), Expect = 1e-34
 Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 8/118 (6%)

Query: 153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAAT---SGGTVTYEGR 209
            P V+ ++ GED+   + +F++       +LS  GA+SN TLR          TVT+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 210 FEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSF 267
            EILSLSG+    +       +G L VSL+  DGRV+GG + G L  A  V+VV+G  
Sbjct: 61  LEILSLSGNISPDDG----KPSGHLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 155 HVITVK--AGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLR---QAATSGGTVTYEGR 209
            VI ++   GED+ S++ +F++       +++A GA+ +  LR          T+     
Sbjct: 10  RVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEP 69

Query: 210 FEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGG 248
            E+LSL G+  L +          L  +L   +G  LGG
Sbjct: 70  LEVLSLLGNIALDDPFVH------LHAALGDENGITLGG 102

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.92
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.29
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.23
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	84.66

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=5.9e-29  Score=209.37  Aligned_cols=118  Identities=28%  Similarity=0.380  Sum_probs=103.3

Q ss_pred             ceeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccC--CCCeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329          152 FTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAAT--SGGTVTYEGRFEILSLSGSFLLSESSGQRS  229 (342)
Q Consensus       152 f~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~--sg~tvt~eG~FEILSLsGnis~~e~g~~~s  229 (342)
                      ||+|++||++||||+++|++||++..+..|+|+++|+|++|+|++++.  ....++|+|+|||+||+|||...+ +   +
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~-g---~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPED-G---K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEET-T---E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCC-C---C
Confidence            799999999999999999999998889889999999999999999964  335789999999999999999833 3   2


Q ss_pred             CCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccc
Q 019329          230 RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKE  274 (342)
Q Consensus       230 ~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~  274 (342)
                      ++.|||++|+|.||+|+||||..+.+ ..++||+|.++....++|
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence            79999999999999999999996555 788999999998876654

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.92  E-value=9.7e-25  Score=190.78  Aligned_cols=119  Identities=20%  Similarity=0.276  Sum_probs=107.5

Q ss_pred             CceeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCC
Q 019329          151 GFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQ  227 (342)
Q Consensus       151 ~f~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~  227 (342)
                      .-+.+++||++|||+++.|.+||+++.+.+++++|||++++++|++++.++   .+++++|+||||||.|||..++    
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~----   83 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD----   83 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence            348899999999999999999999999988999999999999999999654   5789999999999999998755    


Q ss_pred             CCCCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329          228 RSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK  276 (342)
Q Consensus       228 ~s~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~  276 (342)
                        |+.|||++|++.+|+++||||.++.+ ..|+||+|.++......|..
T Consensus        84 --p~~HlHa~l~~~~G~~~GGHL~~~~V-~~t~Ev~I~el~~~~~~R~~  129 (141)
T COG1661          84 --PFVHLHAALGDENGITLGGHLLEGEV-FPTAEVFIRELPGELFRREF  129 (141)
T ss_pred             --CcEEEEEEEecCCCcEEeeeecccEE-eEEEEEEEEEccccceeEec
Confidence              79999999999999999999998665 45999999999998766543

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.29  E-value=0.0014  Score=36.57  Aligned_cols=13  Identities=69%  Similarity=1.066  Sum_probs=4.6

Q ss_pred             cccCCCCCCCCCC
Q 019329           74 KRKRGRPRKYGPD   86 (342)
Q Consensus        74 kkKRGRPRKY~~d   86 (342)
                      +|+||||||+..+
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            6899999998653

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.23  E-value=0.0023  Score=41.90  Aligned_cols=15  Identities=67%  Similarity=0.855  Sum_probs=13.1

Q ss_pred             cccCCCCCCCCCCCC
Q 019329           74 KRKRGRPRKYGPDGT   88 (342)
Q Consensus        74 kkKRGRPRKY~~dg~   88 (342)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998754

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=84.66  E-value=0.34  Score=45.20  Aligned_cols=12  Identities=75%  Similarity=1.085  Sum_probs=10.6

Q ss_pred             cccccCCCCCCC
Q 019329           72 PMKRKRGRPRKY   83 (342)
Q Consensus        72 ~~kkKRGRPRKY   83 (342)
                      .+|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            689999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	3e-27
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-27
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	6e-18
3htn_A	149	Putative DNA binding protein; DUF269 family protei	6e-09
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	1e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	2e-08

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  103 bits (259), Expect = 3e-27
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 136 SGKKHQLEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQ-NGPRAVCILSANGAISNVTL 194
           +G  + +            + + +  G++V S++ +F Q N  RA  I    G++++V L
Sbjct: 2   AGDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVAL 61

Query: 195 RQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLL 254
           R A     T +  G FE++SL+G+  L+           L +++S P G +LGG +    
Sbjct: 62  RYAG-QEATTSLTGTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGC 112

Query: 255 TAATPVQVVVGSF 267
           T  T +++V+G  
Sbjct: 113 TVRTTLELVIGEL 125

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  103 bits (258), Expect = 3e-27
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 154 PHVITVKAGEDVSSKIMSF-SQNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEI 212
              + +  G D+  +I+    Q+   A  I S  G +S + +R A  S  T+     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLA-DSVSTLQVSAPFEI 62

Query: 213 LSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSF 267
           LSLSG+               L ++++   GRV GG +       T  ++++  +
Sbjct: 63  LSLSGTLTYQHC--------HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 78.5 bits (193), Expect = 6e-18
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 142 LEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLR---QAA 198
           +  + S G     ++  V  GE++ + I +F +       I++  G + N  +    +  
Sbjct: 2   VTGMFSLG---RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEK 58

Query: 199 TSGGTVTYEGRFEILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAAT 258
                +  +G +E++SL G+  L +            VSL   +G V GG +        
Sbjct: 59  KEYKVIPLKGSYELISLIGNVSLKDG----EPFVHAHVSLGNEEGIVFGGHLVEGEVFVA 114

Query: 259 PVQVVV 264
            + +  
Sbjct: 115 EIFLQE 120

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 53.0 bits (127), Expect = 6e-09
 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 155 HVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLR---QAATSGGTVTYEGRFE 211
           +++++    ++   + +F +        ++  GAI  +TLR       +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 212 ILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADG 271
           I +L+G+               L +++   D   L G +   +      + VV  +    
Sbjct: 78  ISNLTGNISSMNE----QVYLHLHITVGRSDYSALAGHLLSAIQNGA-GEFVVEDYSERI 132

Query: 272 RKE 274
            + 
Sbjct: 133 SRT 135

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 155 HVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLR---QAATSGGTVTYEGRFE 211
            ++ +  G+D+  +I  F +        +SA GA+ +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 212 ILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVV 264
           ILSLSG+  + +S         + V L G DG V GG +      A  V V+ 
Sbjct: 72  ILSLSGNVSMKDS----KPFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 6/124 (4%)

Query: 153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSGGT--VTYEGRF 210
           T +++ ++ G++V   +   +++           G +S  T                   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 211 EILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLAD 270
           E+ +++GS    E       +     +++    +  GG + GL       ++ V  +   
Sbjct: 73  EMANMTGSIAWKEG----KPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQR 128

Query: 271 GRKE 274
             + 
Sbjct: 129 LDRF 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.95
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.95
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.95
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.94
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.91
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	95.57

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.95  E-value=8.2e-28  Score=206.45  Aligned_cols=118  Identities=18%  Similarity=0.286  Sum_probs=105.4

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329          153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS  229 (342)
Q Consensus       153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s  229 (342)
                      ++|++||++||||+++|.+||+++.+..|+++++|+|++|+|++++.+.   ..++++|+|||+||+|||.+.++.    
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~----   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE----   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence            7999999999999999999998776666667999999999999998764   368999999999999999986532    


Q ss_pred             CCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329          230 RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK  276 (342)
Q Consensus       230 ~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~  276 (342)
                      ++.|||++|+|.||+|+||||...+ ++ ++||+|.+|.+..++|..
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~  130 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP  130 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence            7999999999999999999999777 66 999999999997788764

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.95  E-value=8.3e-27  Score=200.62  Aligned_cols=116  Identities=23%  Similarity=0.333  Sum_probs=103.9

Q ss_pred             ceeEEEEEcCCCCHHHHHHHHHHh-CCccEEEEEeeceeeeEEEecccCCCCeeeeecceEEEEeeeeeeccCCCCCCCC
Q 019329          152 FTPHVITVKAGEDVSSKIMSFSQN-GPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSGQRSR  230 (342)
Q Consensus       152 f~phVIrV~~GEDIvekI~~Faq~-~~~a~cILSAiGAVSnVTLrq~~~sg~tvt~eG~FEILSLsGnis~~e~g~~~s~  230 (342)
                      |++|++||++||||+++|.+||++ +.+++||++++|+|++|+|++++... +++|+|+|||+||+|||.+.        
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--------   72 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ--------   72 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS--------
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC--------
Confidence            799999999999999999999976 55578898999999999999999865 78999999999999999873        


Q ss_pred             CcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329          231 TGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK  276 (342)
Q Consensus       231 ~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~  276 (342)
                      ..|||++|+|.||+++||||+++++++.|+||+|.+|....++|..
T Consensus        73 ~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~  118 (142)
T 2p6y_A           73 HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREF  118 (142)
T ss_dssp             CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEE
T ss_pred             CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEee
Confidence            3799999999999999999997778889999999999887777653

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.95  E-value=8.2e-27  Score=203.28  Aligned_cols=121  Identities=28%  Similarity=0.417  Sum_probs=108.5

Q ss_pred             cCCCCceeEEEEEcCCCCHHHHHHHHHH-hCCccEEEEEeeceeeeEEEecccCCCCeeeeecceEEEEeeeeeeccCCC
Q 019329          147 SAGVGFTPHVITVKAGEDVSSKIMSFSQ-NGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESS  225 (342)
Q Consensus       147 ~~g~~f~phVIrV~~GEDIvekI~~Faq-~~~~a~cILSAiGAVSnVTLrq~~~sg~tvt~eG~FEILSLsGnis~~e~g  225 (342)
                      +....+++|++||++||||+++|.+||+ ++.+++||++++|+|++|+|||++... +++|+|+|||+||+|+|++.   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence            4567789999999999999999999996 566688999999999999999999865 78999999999999999873   


Q ss_pred             CCCCCCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329          226 GQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK  276 (342)
Q Consensus       226 ~~~s~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~  276 (342)
                           ..|||++|+|.||+|+||||++++++..|+||+|.+|....++|..
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~  134 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQP  134 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEE
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEec
Confidence                 3799999999999999999998778889999999999887676653

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=2.7e-27  Score=205.28  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=104.7

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329          153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS  229 (342)
Q Consensus       153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s  229 (342)
                      +.|++||++||||+++|.+||+++.+..|+++++|+|++|+|++++.+.   ..++|+|+|||+||+|||.+.|+.    
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~----   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ----   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC----
Confidence            8999999999999999999998888877777999999999999998754   368999999999999999997532    


Q ss_pred             CCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEeccccccccc
Q 019329          230 RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKES  275 (342)
Q Consensus       230 ~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~  275 (342)
                      ++.|||++|+|.||+|+||||... ++..|+||+|.++.. .+.|.
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~  135 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRT  135 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEE
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEe
Confidence            799999999999999999999976 788999999999987 45543

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.94  E-value=5.5e-27  Score=201.92  Aligned_cols=117  Identities=21%  Similarity=0.260  Sum_probs=103.5

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329          153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS  229 (342)
Q Consensus       153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s  229 (342)
                      ++|+|||++||||+++|.+||+++.+..|+++++|+|++|+|++++...   ..++++|+|||+||+|||.+.++.    
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~----   85 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC----
Confidence            6999999999999999999998766655556999999999999998775   378999999999999999986532    


Q ss_pred             CCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329          230 RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK  276 (342)
Q Consensus       230 ~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~  276 (342)
                      ++.|||++|+ .||+|+||||.+.+ + .|+||+|.+|.+..++|..
T Consensus        86 p~~HlHi~l~-~~G~v~gGHl~~g~-V-~t~Evvi~~~~~~~~~R~~  129 (146)
T 2h6l_A           86 PFCHIHVLLG-KDGEVYGGHLFSAE-V-FACEVFVLPLSGEAPERAF  129 (146)
T ss_dssp             EEEEEEEEEE-EBTEEEEEEEEEEE-E-EEEEEEEEECBSCCCBEEE
T ss_pred             ceeeEEEEEC-CCCcEEeeecCCCE-E-EEEEEEEEEcCCCcEEEeE
Confidence            7999999999 99999999999877 4 6999999999987777653

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.91  E-value=1.8e-24  Score=187.02  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=101.3

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329          153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS  229 (342)
Q Consensus       153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s  229 (342)
                      +.+++||++||||+++|.+||+++.+..++++++|++++++|++++.+.   ...+++ ++||+||+|||++.| +   .
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G---~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-G---K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-T---E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-C---C
Confidence            6699999999999999999999988888889999999999999998764   246788 899999999999865 3   2


Q ss_pred             CCcceEEEEeCCCCceEeeeccCCcEEc-ccEEEEEEeccccccccc
Q 019329          230 RTGGLSVSLSGPDGRVLGGSVAGLLTAA-TPVQVVVGSFLADGRKES  275 (342)
Q Consensus       230 ~~~HLHVSLAg~DGqViGGHL~g~lIAa-stVEVVV~sF~~~~~k~~  275 (342)
                      ++.|||++|+|.||+|+||||... ++. .|+||+|..+.. .+.|.
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g-~V~~~t~Ei~i~~~~~-~~~R~  132 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGL-TVGTGSCEITVTVYPQ-RLDRF  132 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEE-EEEEEEEEEEEEEESS-CCBEE
T ss_pred             ceEEEEEEEECCCCcEEeeEecCc-EEEeEeEEEEEEEcCC-eEEEE
Confidence            899999999999999999999977 566 599999998765 45443

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=95.57  E-value=0.0056  Score=38.94  Aligned_cols=16  Identities=50%  Similarity=0.802  Sum_probs=13.7

Q ss_pred             cccCCCCCCCCCCCCCcc
Q 019329          123 SIKKSRGRPPGSGSGKKH  140 (342)
Q Consensus       123 ~~kk~RGRP~GS~~~nK~  140 (342)
                      ..||+||||.|||  ||.
T Consensus         3 tpKrpRgRpkGSK--Nk~   18 (26)
T 2ezd_A            3 TPKRPRGRPKGSK--NKG   18 (26)
T ss_dssp             SCCCCSSCCTTCC--CCS
T ss_pred             CCcCCCCCcCccc--ccC
Confidence            3589999999999  875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	5e-25
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	5e-15

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 10/114 (8%)

Query: 155 HVITVKAGEDVSSKIMSFS-QNGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEIL 213
           + + +  G++V S++ +F  QN  RA  I    G++++V LR A     T +  G FE++
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLTGTFEVI 67

Query: 214 SLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSF 267
           SL+G+  L+           L +++S P G +LGG +    T  T +++V+G  
Sbjct: 68  SLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL 113

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 68.8 bits (168), Expect = 5e-15
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 155 HVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLR---QAATSGGTVTYEGRFE 211
            ++ +  G+D+  +I  F +        +SA GA+ +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 212 ILSLSGSFLLSESSGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVV 264
           ILSLSG+     S         + V L G DG V GG +      A  V V+ 
Sbjct: 72  ILSLSGNV----SMKDSKPFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.92

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=2.9e-27  Score=200.35  Aligned_cols=120  Identities=28%  Similarity=0.422  Sum_probs=108.0

Q ss_pred             CCCCceeEEEEEcCCCCHHHHHHHHHH-hCCccEEEEEeeceeeeEEEecccCCCCeeeeecceEEEEeeeeeeccCCCC
Q 019329          148 AGVGFTPHVITVKAGEDVSSKIMSFSQ-NGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESSG  226 (342)
Q Consensus       148 ~g~~f~phVIrV~~GEDIvekI~~Faq-~~~~a~cILSAiGAVSnVTLrq~~~sg~tvt~eG~FEILSLsGnis~~e~g~  226 (342)
                      .++..|.|++||++||||+++|.+||+ ++.+++||++++|++++|+|++|+.. ....++|+|||+||+|||...+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCC---
Confidence            356789999999999999999999996 56678999999999999999999875 4678999999999999997643   


Q ss_pred             CCCCCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329          227 QRSRTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK  276 (342)
Q Consensus       227 ~~s~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~  276 (342)
                           .|||++|+|.||+|+||||+++++++.++||+|.+|.+..++|..
T Consensus        78 -----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~  122 (136)
T d2hx0a1          78 -----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQP  122 (136)
T ss_dssp             -----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEE
T ss_pred             -----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEcc
Confidence                 699999999999999999998889999999999999988777753

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=1.9e-25  Score=188.17  Aligned_cols=117  Identities=21%  Similarity=0.258  Sum_probs=104.2

Q ss_pred             eeEEEEEcCCCCHHHHHHHHHHhCCccEEEEEeeceeeeEEEecccCCC---CeeeeecceEEEEeeeeeeccCCCCCCC
Q 019329          153 TPHVITVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQAATSG---GTVTYEGRFEILSLSGSFLLSESSGQRS  229 (342)
Q Consensus       153 ~phVIrV~~GEDIvekI~~Faq~~~~a~cILSAiGAVSnVTLrq~~~sg---~tvt~eG~FEILSLsGnis~~e~g~~~s  229 (342)
                      |.|++||++||||+++|.+||++..+..|+++++|++++|+|++++...   ..+.++|+|||+||+|||...+++    
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~----   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC----
Confidence            8999999999999999999999888888999999999999999998765   367999999999999999887754    


Q ss_pred             CCcceEEEEeCCCCceEeeeccCCcEEcccEEEEEEecccccccccc
Q 019329          230 RTGGLSVSLSGPDGRVLGGSVAGLLTAATPVQVVVGSFLADGRKESK  276 (342)
Q Consensus       230 ~~~HLHVSLAg~DGqViGGHL~g~lIAastVEVVV~sF~~~~~k~~~  276 (342)
                      ++.|+|++|++ ||+++||||.... +. ++|++|.++....++|..
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~-v~-~~e~~i~~~~~~~~~R~~  129 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAE-VF-ACEVFVLPLSGEAPERAF  129 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEE-EE-EEEEEEEECBSCCCBEEE
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccE-EE-EEEEEEEEecCCceEEec
Confidence            79999999997 7999999999764 43 589999999888887763