Citrus Sinensis ID: 019330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLAKMR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEcccccHHHHHHHHHHHHHccHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHcccccccccccccccccEEEHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcc
Coil and Loop (DISEMBL)
maqptqpdpflevcrdsdAGAAFVLEskgewwhagfhlttaivgptiltlpyvfrglgwglgftCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMysdlypngslkLYEFIAMVTVVMIVLSqlptfhslrHINLVSLLLSLGYSFLVVGACinagfsknappkdyslessksariFSAFTSISIIAAIFgngilpeiqatlappatgkmVKGLLMCYSVIFVTFYSAAVSGYwafgnesnsNILKslmpdngpslaptSVIGLAVVFVLLQLFAIGlvspqfhsSLQLFQFLAKMR
Flexible Loop (DISEMBL)
maqptqpdpfleVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLAKMR
Low Complexity Region (SEG)
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKsarifsaftsisiiaaifGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGlavvfvllqlfaIGLVSPQFHSSLQLFQFLAKMR
Disordered region (IsUnstruct)
**********LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS***************ARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILK*********LAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFL****
Disordered Region (DISOPRED)
*************************ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLAKM*
Disordered Region (DISEMBL)
********PFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLAKMR
Disordered Region (DISPRO)
*****************DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLAKMR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLAKMR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q8L4X4	452	Probable GABA transporter	yes	no	0.956	0.723	0.825	1e-158
F4HW02	451	GABA transporter 1 OS=Ara	no	no	0.906	0.687	0.475	3e-75
Q9FKS8	446	Lysine histidine transpor	no	no	0.871	0.668	0.292	2e-29
Q9LRB5	441	Lysine histidine transpor	no	no	0.853	0.662	0.279	7e-29
O22719	451	Lysine histidine transpor	no	no	0.815	0.618	0.29	2e-27
Q9SR44	441	Lysine histidine transpor	no	no	0.853	0.662	0.276	5e-26
Q9C9J0	448	Lysine histidine transpor	no	no	0.766	0.584	0.304	7e-25
Q9C733	453	Lysine histidine transpor	no	no	0.856	0.646	0.295	9e-25
Q69LA1	434	Probable proline transpor	no	no	0.754	0.594	0.320	6e-24
Q60DN5	473	Proline transporter 1 OS=	no	no	0.742	0.536	0.314	7e-24

>sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana GN=At5g41800 PE=2 SV=1

 Score =  558 bits (1437), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/327 (82%), Positives = 292/327 (89%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300
           PEIQATLAPPATGKM+KGLL+CYSVIF TFYSAA+SGYW FGN S+SNILK+LMPD GP+
Sbjct: 241 PEIQATLAPPATGKMLKGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPT 300

Query: 301 LAPTSVIGLAVVFVLLQLFAIGLVSPQ 327
           LAP  VIGLAV+FVLLQLFAIGLV  Q
Sbjct: 301 LAPIVVIGLAVIFVLLQLFAIGLVYSQ 327

May be involved in the transport of GABA.
Arabidopsis thaliana (taxid: 3702)

>sp|F4HW02|GAT1_ARATH GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1

 Score =  281 bits (720), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 204/311 (65%), Gaps = 1/311 (0%)

Query: 18  DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSY 77
           DAG+ FVL+SKG WWH GFHLTT+IV P +L+LPY F+ LGW  G +CL     VTFYSY
Sbjct: 19  DAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVTFYSY 78

Query: 78  YLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137
            L+S  L+H    G R++RFR++A  +L   W  Y+V  IQ A+  GV I   LL G+CL
Sbjct: 79  TLLSLTLEHHASLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLGGQCL 138

Query: 138 QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197
           + MY  + PNG +KL+EF+ +   +++VL+Q P+FHSLR+IN +SLLL L YS     A 
Sbjct: 139 KAMYLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASAAAAS 198

Query: 198 INAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVK 257
           I  G   NAP KDY++      R+F  F +++IIA  +GNGI+PEIQAT++ P  GKM+K
Sbjct: 199 IYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATISAPVKGKMMK 258

Query: 258 GLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLM-PDNGPSLAPTSVIGLAVVFVLL 316
           GL MCY V+ +TF++ A++GYWAFG ++N  I  + +  +      PT  I L  +F +L
Sbjct: 259 GLCMCYLVVIMTFFTVAITGYWAFGKKANGLIFTNFLNAETNHYFVPTWFIFLVNLFTVL 318

Query: 317 QLFAIGLVSPQ 327
           QL A+ +V  Q
Sbjct: 319 QLSAVAVVYLQ 329

High affinity gamma-aminobutyric acid (GABA) transporter probably involved in GABA uptake into cells. When expressed in a heterologous system (Xenopus oocytes), imports GABA, butylamine, beta- and L-Alanine, 5-aminovaleric acid, 6-aminocaproic acid and 8-aminocaprylic acid, but does not mediate the transport of proline or glycine betaine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 27/325 (8%)

Query: 6   QPDPFLEVCRDSDAGAAFVLES--KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           Q D  L   R  +      + S    +WW++ FH  TA+VG  +L LPY    LGWG G 
Sbjct: 11  QDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGI 70

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
             L +   +T Y+ + M ++  H    G+R  R+ EL     G     Y V+  Q  +  
Sbjct: 71  AVLVLSWVITLYTLWQMVEM--HEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query: 124 GVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179
           GV I  ++  G+ L    +++  D  P   +KL  FI +   V  VLS LP F+S+  ++
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVCDDCKP---IKLTYFIMIFASVHFVLSHLPNFNSISGVS 185

Query: 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSA-RIFSAFTSISIIA-AIFGN 237
           L + ++SL YS +   +  + G  ++     Y  ++  +A  +F+ F+ +  +A A  G+
Sbjct: 186 LAAAVMSLSYSTIAWASSASKGVQEDV---QYGYKAKTTAGTVFNFFSGLGDVAFAYAGH 242

Query: 238 GILPEIQATL----APPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSL 293
            ++ EIQAT+      P+ G M +G+++ Y V+ + ++  A+ GY+ FGN    NIL SL
Sbjct: 243 NVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSL 302

Query: 294 MPDNGPSLAPTSVIGLAVVFVLLQL 318
                    P  +I  A +FV++ +
Sbjct: 303 K-------KPAWLIATANIFVVIHV 320

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  128 bits (321), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 157/311 (50%), Gaps = 19/311 (6%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           ++ D           +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +T 
Sbjct: 17  KNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITL 76

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G
Sbjct: 77  YTLWQMVEM--HEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGG 134

Query: 135 ECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
             L+ ++  + P+   ++   +I +   V  V+S LP F+S+  I+L + ++SL YS + 
Sbjct: 135 ASLKKVHQLVCPDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIA 194

Query: 194 VGACINAGFSKNAPPKDYSLESSKSA-RIFSAFTSISIIA-AIFGNGILPEIQATLAP-- 249
             A ++ G     P  DYS  +S    ++F+   ++  +A A  G+ ++ EIQAT+    
Sbjct: 195 WAASVHKGVH---PDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTP 251

Query: 250 --PATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVI 307
             P+   M +G+++ Y V+ + ++  A  GY+ FGN  + NIL +L         P  +I
Sbjct: 252 EMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSVDDNILITLE-------KPIWLI 304

Query: 308 GLAVVFVLLQL 318
            +A +FV++ +
Sbjct: 305 AMANMFVVIHV 315

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 21/300 (7%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
              W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+++ M ++ +  
Sbjct: 35  NANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMF 94

Query: 88  EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS---DL 144
           E  G+R  R+ EL     G     Y V+ +Q  + T   I  ++  GE L+ ++      
Sbjct: 95  E--GKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGD 152

Query: 145 YPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSK 204
           Y    LK+  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G + 
Sbjct: 153 YECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVAN 212

Query: 205 NAPPKDYSLESSKSARIFSAFTSI--SIIAAIFGNGILPEIQATL----APPATGKMVKG 258
           N    +Y  +   +  +  AF      +  A  G+ ++ EIQAT+      P+   M KG
Sbjct: 213 NV---EYGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKG 269

Query: 259 LLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQL 318
            ++ Y ++   ++  A+ G+W FGN    NILK+L         P  +I +A +FV++ L
Sbjct: 270 AIVAYIIVAFCYFPVALVGFWTFGNNVEENILKTLR-------GPKGLIIVANIFVIIHL 322

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 155/311 (49%), Gaps = 19/311 (6%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           ++ D           +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +TF
Sbjct: 17  KNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITF 76

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G
Sbjct: 77  YTLWQMVQM--HEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGG 134

Query: 135 ECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
           + L+ ++  L  +  +++   +I +   +  VL+ LP F+S+  ++L + ++SL YS + 
Sbjct: 135 KSLKKIHDLLCTDCKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIA 194

Query: 194 VGACINAGFSKNAPPKDYSLE-SSKSARIFSAFTSISIIA-AIFGNGILPEIQATL---- 247
               +  G   N    DYS   S+ S  +F+   ++  +A A  G+ ++ EIQAT+    
Sbjct: 195 WATSVKKGVHPNV---DYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTP 251

Query: 248 APPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVI 307
             P+   M KG+++ Y V+ + ++  A   Y+ FGN  + NIL +L         P  +I
Sbjct: 252 EKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSVDDNILMTLE-------KPIWLI 304

Query: 308 GLAVVFVLLQL 318
            +A  FV++ +
Sbjct: 305 AIANAFVVVHV 315

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 11/273 (4%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
           + +W+++ FH  TA+VG  +L LP+    LGWG G   + +   +TFYS + M ++  H 
Sbjct: 36  EAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQL--HE 93

Query: 88  EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN 147
              G+R  R+ EL  +  G    ++ V+  Q  +     I   +  G+ L+     L+PN
Sbjct: 94  AVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPN 153

Query: 148 -GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
              ++   +I     + +VLSQ P F+S++ ++L++ L+S  YS +   A I  G     
Sbjct: 154 LEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHR- 212

Query: 207 PPKDYSLESSKSAR-IFSAFTSISIIAAIF-GNGILPEIQATLAP----PATGKMVKGLL 260
            P  Y +     A  +F AF  I  IA  F G+ ++ EIQAT+      P+   M KG++
Sbjct: 213 -PSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVV 271

Query: 261 MCYSVIFVTFYSAAVSGYWAFGNESNSNILKSL 293
           + Y ++ + +   A+SGYWAFG     ++L SL
Sbjct: 272 VAYIIVIICYLFVAISGYWAFGAHVEDDVLISL 304

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  114 bits (286), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 154/318 (48%), Gaps = 25/318 (7%)

Query: 11  LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG 70
           LE  ++ D           +WW++ FH  TA+VG  +L LP+    LGWG G   L +  
Sbjct: 25  LERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSW 84

Query: 71  FVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAI 130
            +T Y+ + M ++  H    G+R  R+ EL     G     Y ++  Q  +  GV I  +
Sbjct: 85  IITLYTLWQMVEM--HEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYM 142

Query: 131 LLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS 186
           +  G+ L    +I   D  P   ++L  FI +      VLS LP F+S+  ++LV+ ++S
Sbjct: 143 VTGGQSLKKFHEIACQDCSP---IRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMS 199

Query: 187 LGYSFLVVGACINAGFSKNAPPKDYSLESSKSAR-IFSAFTSISIIA-AIFGNGILPEIQ 244
           L YS +   A    G  ++     Y  +S  +A  + S FT +  IA A  G+ ++ EIQ
Sbjct: 200 LSYSTIAWTATAAKGVQEDV---QYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQ 256

Query: 245 ATL----APPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300
           AT+    + P+ G M +G+++ Y V+ + ++  A+ GY  FGN    N+L SL       
Sbjct: 257 ATIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVLMSLE------ 310

Query: 301 LAPTSVIGLAVVFVLLQL 318
             P   I  A +FV++ +
Sbjct: 311 -TPVWAIATANLFVVMHV 327

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69LA1|PROT2_ORYSJ Probable proline transporter 2 OS=Oryza sativa subsp. japonica GN=LOC_Os07g01090 PE=2 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 139/281 (49%), Gaps = 23/281 (8%)

Query: 27  SKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTC-LTVMGFVTFYSYYLMSKVL 84
           S   W+  GF LTT +    +L     V   LGW +G TC L +   ++ Y+  L++++ 
Sbjct: 23  SADPWYQVGFVLTTGVNSAYVLGYSGSVMVPLGW-IGGTCGLILAAAISLYANALLARL- 80

Query: 85  DHCEKAGRRHIRFRELAADVLGSG-----WMFYFVIFIQTAINTGVGIGAILLAGECLQI 139
              E  G+RHIR+R+LA  + G       W   +V      INTG     I+LAG+ L+ 
Sbjct: 81  --HEIGGKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFM--INTGF----IILAGQALKA 132

Query: 140 MYSDLYPNGSLKLYEFIAMVTVVMIVLS-QLPTFHSLRHINLVSLLLSLGYSFLVVGACI 198
            Y     +G LKL   IA+   V  + +  +P   +LR     S   SL Y  +     +
Sbjct: 133 TYVLFRDDGVLKLPYCIALSGFVCALFAFGIPYLSALRIWLGFSTFFSLIYITIAFVLSL 192

Query: 199 NAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKG 258
             G +   P KDY++  S SARIF+   +++ +   +  G+LPEIQAT+ PP    M K 
Sbjct: 193 RDGITT--PAKDYTIPGSHSARIFTTIGAVANLVFAYNTGMLPEIQATIRPPVVKNMEKA 250

Query: 259 LLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGP 299
           L   ++V  +  Y+    GYWA+G+ ++S +L S+    GP
Sbjct: 251 LWFQFTVGSLPLYAVTFMGYWAYGSSTSSYLLNSV---KGP 288

Proline transporter that mediates proline transport across the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60DN5|PROT1_ORYSJ Proline transporter 1 OS=Oryza sativa subsp. japonica GN=PROT1 PE=2 SV=1

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 23/277 (8%)

Query: 31  WWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTC-LTVMGFVTFYSYYLMSKVLDHCE 88
           W+  GF LTT +    +L     +   LGW +G TC L +   ++ Y+  L++ +    E
Sbjct: 66  WYQVGFILTTGVNSAYVLGYSASIMVPLGW-IGGTCGLILAAAISMYANALLAHL---HE 121

Query: 89  KAGRRHIRFRELAADVLGSG-----WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD 143
             G+RHIR+R+LA  + G       W   +V      INTG+    I+LAG+ L+ +Y  
Sbjct: 122 VGGKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFM--INTGL----IILAGQALKAIYVL 175

Query: 144 LYPNGSLKLYEFIAMVTVVMIVLS-QLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGF 202
              +G LKL   IA+   V  + +  +P   +LR    +S + SL Y  +     +  G 
Sbjct: 176 FRDDGVLKLPYCIALSGFVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGI 235

Query: 203 SKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMC 262
           +   P KDY++  S S RIF+   +++ +   +  G+LPEIQAT+ PP    M K L   
Sbjct: 236 T--TPAKDYTIPGSHSDRIFTTIGAVANLVFAYNTGMLPEIQATIRPPVVKNMEKALWFQ 293

Query: 263 YSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGP 299
           ++V  +  Y+    GYWA+G+ ++S +L S+    GP
Sbjct: 294 FTVGSLPLYAVTFMGYWAYGSSTSSYLLNSV---KGP 327

Proline transporter that mediates proline transport across the plasma membrane when expressed in a heterologous system (Xenopus oocytes).

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
225426008	455	PREDICTED: lysine histidine transporter	0.956	0.718	0.865	1e-164
255537737	452	amino acid transporter, putative [Ricinu	0.918	0.694	0.888	1e-163
224058347	453	proline transporter [Populus trichocarpa	0.956	0.721	0.859	1e-161
224072174	453	proline transporter [Populus trichocarpa	0.915	0.690	0.875	1e-158
297805462	452	hypothetical protein ARALYDRAFT_493805 [	0.956	0.723	0.828	1e-158
18422139	452	Transmembrane amino acid transporter fam	0.956	0.723	0.825	1e-156
21554158	452	amino acid permease-like protein [Arabid	0.956	0.723	0.825	1e-156
363807418	445	uncharacterized protein LOC100815232 [Gl	0.935	0.719	0.828	1e-155
449464072	454	PREDICTED: probable GABA transporter 2-l	0.947	0.713	0.808	1e-147
449505054	454	PREDICTED: LOW QUALITY PROTEIN: probable	0.947	0.713	0.805	1e-146

>gi|225426008|ref|XP_002273161.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|297742313|emb|CBI34462.3| unnamed protein product [Vitis vinifera]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/327 (86%), Positives = 302/327 (92%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           +A+P   DPF E  R+ DAGA FVLESKG WWHAGFHLTTAIVGPTILTLPY FRGLGWG
Sbjct: 4   IAEPLHVDPFPEQNREEDAGAVFVLESKGTWWHAGFHLTTAIVGPTILTLPYAFRGLGWG 63

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVI IQ A
Sbjct: 64  LGFLCLTTMGLVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIVIQAA 123

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTGVGIGAILL GECLQIMYSDL+PNGSLKLYEFIAMVT VMI+LSQLPTFHSLRHINL
Sbjct: 124 INTGVGIGAILLGGECLQIMYSDLFPNGSLKLYEFIAMVTAVMIILSQLPTFHSLRHINL 183

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
           VSL LSLGY+FLVVGACI+AG SK+ PP+DYSLE+S+SAR+FSAFTSISIIAAIFGNGIL
Sbjct: 184 VSLFLSLGYTFLVVGACIHAGTSKHPPPRDYSLETSESARVFSAFTSISIIAAIFGNGIL 243

Query: 241 PEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300
           PEIQATLAPPATGKMVKGLLMCY+VIFVTFYSA+V+GYWAFGN+S+SNILKSLMPD GPS
Sbjct: 244 PEIQATLAPPATGKMVKGLLMCYAVIFVTFYSASVAGYWAFGNKSSSNILKSLMPDEGPS 303

Query: 301 LAPTSVIGLAVVFVLLQLFAIGLVSPQ 327
           LAPT V+GLAV+FVLLQL AIGLV  Q
Sbjct: 304 LAPTWVLGLAVIFVLLQLLAIGLVYSQ 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537737|ref|XP_002509935.1| amino acid transporter, putative [Ricinus communis] gi|223549834|gb|EEF51322.1| amino acid transporter, putative [Ricinus communis]

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/314 (88%), Positives = 298/314 (94%)

Query: 14  CRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT 73
           CR+ DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF CLTVMG VT
Sbjct: 14  CREVDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTVMGVVT 73

Query: 74  FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA 133
           FYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA
Sbjct: 74  FYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA 133

Query: 134 GECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
           GECLQIMYS++YP+G LKL+EFIAMVT VM+VLSQLPTFHSLRH+N+ SLLLSLGY+FLV
Sbjct: 134 GECLQIMYSNIYPSGPLKLFEFIAMVTAVMVVLSQLPTFHSLRHLNMASLLLSLGYTFLV 193

Query: 194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATG 253
           VGACI+AG SKNAPP+DYSLESS+SAR+FSAFTSISIIAAIFGNGILPEIQATLAPPATG
Sbjct: 194 VGACISAGLSKNAPPRDYSLESSESARVFSAFTSISIIAAIFGNGILPEIQATLAPPATG 253

Query: 254 KMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVF 313
           KMVKGLLMCY VI VTFYSAAVSGYW FGN+SNSNILKSL+PD GP+LAPT V+GL V+F
Sbjct: 254 KMVKGLLMCYIVIVVTFYSAAVSGYWVFGNKSNSNILKSLLPDEGPALAPTWVLGLGVIF 313

Query: 314 VLLQLFAIGLVSPQ 327
           VLLQLFAIGLV  Q
Sbjct: 314 VLLQLFAIGLVYSQ 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058347|ref|XP_002299485.1| proline transporter [Populus trichocarpa] gi|222846743|gb|EEE84290.1| proline transporter [Populus trichocarpa]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 282/328 (85%), Positives = 299/328 (91%), Gaps = 1/328 (0%)

Query: 1   MAQPTQPDPFL-EVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGW 59
           MA P + DPFL +  R+ DAGA FVLESKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW
Sbjct: 1   MAPPPKSDPFLADSQREVDAGAVFVLESKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGW 60

Query: 60  GLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQT 119
           GLGF CLTVMG VTFY+YYLMSKVLD+CE+ GRRHIRFRELAADVLGSGWMFYFVI IQT
Sbjct: 61  GLGFFCLTVMGMVTFYAYYLMSKVLDYCERDGRRHIRFRELAADVLGSGWMFYFVIVIQT 120

Query: 120 AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179
           AINTGVGIGAILLAGECLQIMYS L P+G LKLYEFIAMVTVVMIVLSQ PTFHSLRHIN
Sbjct: 121 AINTGVGIGAILLAGECLQIMYSSLSPDGPLKLYEFIAMVTVVMIVLSQFPTFHSLRHIN 180

Query: 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGI 239
           L SL LSLGYSF+VVGACI+AG SKNAPP+DYSLESS+SAR+FSAFTSISIIAAIFGNGI
Sbjct: 181 LASLFLSLGYSFIVVGACIHAGLSKNAPPRDYSLESSESARVFSAFTSISIIAAIFGNGI 240

Query: 240 LPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGP 299
           LPEIQATLAPPATGKMVKGLLMCY+VI VTFYS A+SGYW FGN+SNSNILKSLMPD  P
Sbjct: 241 LPEIQATLAPPATGKMVKGLLMCYTVILVTFYSTAMSGYWVFGNKSNSNILKSLMPDEEP 300

Query: 300 SLAPTSVIGLAVVFVLLQLFAIGLVSPQ 327
           SLAPT V+G+ VVFVLLQLFAIGLV  Q
Sbjct: 301 SLAPTWVLGMGVVFVLLQLFAIGLVYSQ 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072174|ref|XP_002303637.1| proline transporter [Populus trichocarpa] gi|222841069|gb|EEE78616.1| proline transporter [Populus trichocarpa]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/313 (87%), Positives = 292/313 (93%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           R+ DAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPYVF+GLGW LGF CLTVMG VTF
Sbjct: 16  REVDAGAVFVLQSKGEWWHAGFHLTTAIVGPTILTLPYVFKGLGWALGFFCLTVMGMVTF 75

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+YYLMSKVLD+CEK GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG
Sbjct: 76  YAYYLMSKVLDYCEKDGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 135

Query: 135 ECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV 194
           ECLQIMYS L P+G LKLYEFIAMVTVVMIVLSQLPTFHSLRHINL SL LSLGY+F+VV
Sbjct: 136 ECLQIMYSSLSPDGPLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLASLFLSLGYTFIVV 195

Query: 195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLAPPATGK 254
           GAC+ AG SKNAP +DYSLESS SAR+FSAFTSISIIAAIFGNGILPEIQATLAPPATGK
Sbjct: 196 GACVQAGLSKNAPSRDYSLESSGSARVFSAFTSISIIAAIFGNGILPEIQATLAPPATGK 255

Query: 255 MVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFV 314
           MVKGLLMCY+VI +TFYSA+VSGYWAFGN+SNSNI+KSLMPD GPSLAPT V+GL V+FV
Sbjct: 256 MVKGLLMCYTVILLTFYSASVSGYWAFGNKSNSNIIKSLMPDEGPSLAPTWVLGLGVIFV 315

Query: 315 LLQLFAIGLVSPQ 327
           LLQLFAIGLV  Q
Sbjct: 316 LLQLFAIGLVYSQ 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805462|ref|XP_002870615.1| hypothetical protein ARALYDRAFT_493805 [Arabidopsis lyrata subsp. lyrata] gi|297316451|gb|EFH46874.1| hypothetical protein ARALYDRAFT_493805 [Arabidopsis lyrata subsp. lyrata]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/327 (82%), Positives = 292/327 (89%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFSVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSGWMFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGWMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS LYP G+LKLYEFIAMVT VM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLYPQGTLKLYEFIAMVTAVMMVLSQLPSFHSLRHINF 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SL+LSLGY+FLVVGACIN G SKNAP +DYSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLILSLGYTFLVVGACINLGLSKNAPKRDYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300
           PEIQATLAPPATGKM+KGLL+CYSVIF TFYSAA+SGYW FGN S+SNILK+LMPD GP+
Sbjct: 241 PEIQATLAPPATGKMLKGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPT 300

Query: 301 LAPTSVIGLAVVFVLLQLFAIGLVSPQ 327
           LAP  VIGLAV+FVLLQLFAIGLV  Q
Sbjct: 301 LAPIVVIGLAVIFVLLQLFAIGLVYSQ 327

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422139|ref|NP_568597.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|75245603|sp|Q8L4X4.1|GAT2_ARATH RecName: Full=Probable GABA transporter 2 gi|20466438|gb|AAM20536.1| amino acid permease-like protein [Arabidopsis thaliana] gi|22136372|gb|AAM91264.1| amino acid permease-like protein [Arabidopsis thaliana] gi|332007347|gb|AED94730.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/327 (82%), Positives = 292/327 (89%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300
           PEIQATLAPPATGKM+KGLL+CYSVIF TFYSAA+SGYW FGN S+SNILK+LMPD GP+
Sbjct: 241 PEIQATLAPPATGKMLKGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPT 300

Query: 301 LAPTSVIGLAVVFVLLQLFAIGLVSPQ 327
           LAP  VIGLAV+FVLLQLFAIGLV  Q
Sbjct: 301 LAPIVVIGLAVIFVLLQLFAIGLVYSQ 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554158|gb|AAM63237.1| amino acid permease-like protein [Arabidopsis thaliana]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/327 (82%), Positives = 292/327 (89%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFFCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINF 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300
           PEIQATLAPPATGKM+KGLL+CYSVIF TFYSAA+SGYW FGN S+SNILK+LMPD GP+
Sbjct: 241 PEIQATLAPPATGKMLKGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPT 300

Query: 301 LAPTSVIGLAVVFVLLQLFAIGLVSPQ 327
           LAP  VIGLAV+FVLLQLFAIGLV  Q
Sbjct: 301 LAPIVVIGLAVIFVLLQLFAIGLVYSQ 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807418|ref|NP_001242384.1| uncharacterized protein LOC100815232 [Glycine max] gi|255640094|gb|ACU20338.1| unknown [Glycine max]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/327 (82%), Positives = 296/327 (90%), Gaps = 7/327 (2%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           MA+P + D       + D GAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWG
Sbjct: 1   MAEPPKGD-------EEDGGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWG 53

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLTVMG VTFYSY+LMSKVLDHCEK+GRRHIRFRELAADVLGSGWMFYFVIFIQTA
Sbjct: 54  LGFMCLTVMGIVTFYSYFLMSKVLDHCEKSGRRHIRFRELAADVLGSGWMFYFVIFIQTA 113

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTGVG+GAILLAGECLQIMYS++ P+G LKLY FIAMVTV+MIVLSQLP+FHSLRHINL
Sbjct: 114 INTGVGVGAILLAGECLQIMYSNISPHGPLKLYHFIAMVTVIMIVLSQLPSFHSLRHINL 173

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLL +LGY+ LVVGACI+AG S+NAPP+ YSLE  KSAR FSAFTS+SI+AAIFGNGIL
Sbjct: 174 CSLLFALGYTILVVGACIHAGTSENAPPRVYSLEPKKSARAFSAFTSMSILAAIFGNGIL 233

Query: 241 PEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300
           PEIQATLAPPATGKMVKGL MCYSVIFVTFYSAAVSGYW FGN+SNSNILKSL+PD+GP 
Sbjct: 234 PEIQATLAPPATGKMVKGLFMCYSVIFVTFYSAAVSGYWVFGNKSNSNILKSLLPDSGPP 293

Query: 301 LAPTSVIGLAVVFVLLQLFAIGLVSPQ 327
           LAPT V+GLA++FVLLQLFAIGLV  Q
Sbjct: 294 LAPTWVLGLAIIFVLLQLFAIGLVYSQ 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464072|ref|XP_004149753.1| PREDICTED: probable GABA transporter 2-like [Cucumis sativus]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/324 (80%), Positives = 291/324 (89%)

Query: 4   PTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           P   D F +  R +DAGAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF
Sbjct: 6   PITHDLFTDTERQNDAGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGF 65

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
            CLT+M  VTFYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT
Sbjct: 66  FCLTIMAVVTFYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 125

Query: 124 GVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183
           GVGIGAILLAG+CL+I+YS L PNGS+KLYEFIA+VT VMI+LSQLPTFHSLRH+NL SL
Sbjct: 126 GVGIGAILLAGQCLEILYSSLNPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVNLGSL 185

Query: 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEI 243
           LLSLGY+FLVV ACI A  SK AP ++Y+LESS  +R FSAFTSISI+AAIFGNGILPEI
Sbjct: 186 LLSLGYAFLVVAACIIAARSKEAPTREYTLESSPKSRTFSAFTSISILAAIFGNGILPEI 245

Query: 244 QATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAP 303
           QATLAPPA+GKMVKGL+MCYSVIFVTFY+ A SGYW FGN++ SNIL+SL+PD+GPSLAP
Sbjct: 246 QATLAPPASGKMVKGLIMCYSVIFVTFYAIAGSGYWVFGNKATSNILQSLLPDSGPSLAP 305

Query: 304 TSVIGLAVVFVLLQLFAIGLVSPQ 327
           T ++GLAV+FVLLQL AIGLV  Q
Sbjct: 306 TWILGLAVIFVLLQLLAIGLVYSQ 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505054|ref|XP_004162363.1| PREDICTED: LOW QUALITY PROTEIN: probable GABA transporter 2-like [Cucumis sativus]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/324 (80%), Positives = 290/324 (89%)

Query: 4   PTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           P   D F +  R +DAGAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF
Sbjct: 6   PITHDLFTDTERQNDAGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGF 65

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
            CLT+M  VTFYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWM YFVIFIQTAINT
Sbjct: 66  FCLTIMAVVTFYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMXYFVIFIQTAINT 125

Query: 124 GVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183
           GVGIGAILLAG+CL+I+YS L PNGS+KLYEFIA+VT VMI+LSQLPTFHSLRH+NL SL
Sbjct: 126 GVGIGAILLAGQCLEILYSSLNPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVNLGSL 185

Query: 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEI 243
           LLSLGY+FLVV ACI A  SK AP ++Y+LESS  +R FSAFTSISI+AAIFGNGILPEI
Sbjct: 186 LLSLGYAFLVVAACIIAARSKEAPTREYTLESSPKSRTFSAFTSISILAAIFGNGILPEI 245

Query: 244 QATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAP 303
           QATLAPPA+GKMVKGL+MCYSVIFVTFY+ A SGYW FGN++ SNIL+SL+PD+GPSLAP
Sbjct: 246 QATLAPPASGKMVKGLIMCYSVIFVTFYAIAGSGYWVFGNKATSNILQSLLPDSGPSLAP 305

Query: 304 TSVIGLAVVFVLLQLFAIGLVSPQ 327
           T ++GLAV+FVLLQL AIGLV  Q
Sbjct: 306 TWILGLAVIFVLLQLLAIGLVYSQ 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2152995	452	AT5G41800 [Arabidopsis thalian	0.956	0.723	0.746	2.5e-129
TAIR|locus:2199978	451	AT1G08230 [Arabidopsis thalian	0.809	0.614	0.472	3.5e-68
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.754	0.585	0.321	7.7e-32
TAIR|locus:2008435	451	AT1G61270 [Arabidopsis thalian	0.771	0.585	0.297	3.4e-29
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.754	0.578	0.297	3.4e-29
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.757	0.587	0.291	1e-27
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.757	0.587	0.284	1.3e-27
TAIR|locus:2008154	453	AT1G48640 [Arabidopsis thalian	0.818	0.618	0.277	9.5e-27
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.766	0.584	0.278	3.4e-26
TAIR|locus:2044835	436	ProT3 "proline transporter 3"	0.769	0.603	0.293	1.5e-24

TAIR|locus:2152995 AT5G41800 [Arabidopsis thaliana (taxid:3702)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 244/327 (74%), Positives = 263/327 (80%)

Query:     1 MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
             M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct:     1 MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query:    61 LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
             LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct:    61 LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query:   121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
             INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct:   121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query:   181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGIL 240
              SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S                   GNGIL
Sbjct:   181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query:   241 PEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS 300
             PEIQATLAPPATGKM+KGLL+CYSVIF TFYSAA+SGYW FGN S+SNILK+LMPD GP+
Sbjct:   241 PEIQATLAPPATGKMLKGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPT 300

Query:   301 LAPTSVIGXXXXXXXXXXXXIGLVSPQ 327
             LAP  VIG            IGLV  Q
Sbjct:   301 LAPIVVIGLAVIFVLLQLFAIGLVYSQ 327

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 131/277 (47%), Positives = 177/277 (63%)

Query:    18 DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSY 77
             DAG+ FVL+SKG WWH GFHLTT+IV P +L+LPY F+ LGW  G +CL     VTFYSY
Sbjct:    19 DAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVTFYSY 78

Query:    78 YLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137
              L+S  L+H    G R++RFR++A  +L   W  Y+V  IQ A+  GV I   LL G+CL
Sbjct:    79 TLLSLTLEHHASLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLGGQCL 138

Query:   138 QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197
             + MY  + PNG +KL+EF+ +   +++VL+Q P+FHSLR+IN +SLLL L YS     A 
Sbjct:   139 KAMYLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASAAAAS 198

Query:   198 INAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQATLAPPATGKMVK 257
             I  G   NAP KDY++                      GNGI+PEIQAT++ P  GKM+K
Sbjct:   199 IYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATISAPVKGKMMK 258

Query:   258 GLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLM 294
             GL MCY V+ +TF++ A++GYWAFG ++N  I  + +
Sbjct:   259 GLCMCYLVVIMTFFTVAITGYWAFGKKANGLIFTNFL 295

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IGI

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 88/274 (32%), Positives = 141/274 (51%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G   L +   +T Y+ + M ++  H   
Sbjct:    30 KWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVLILSWIITLYTLWQMVEM--HEMV 87

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG- 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G+ L+  + D+   G 
Sbjct:    88 PGKRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLK-KFHDVLCEGH 146

Query:   149 ---SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 205
                ++KL  FI +   V  VLSQLP F+S+  ++L + ++SL YS +  GA ++ G  K 
Sbjct:   147 GCKNIKLTYFIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGASVDKG--KV 204

Query:   206 APPKDYSLES--SKXXXXXXXXXXXXXXXXXXGNGILPEIQATL--AP--PATGKMVKGL 259
             A   DY L +  S                   G+ ++ EIQAT+   P  P+   M KG+
Sbjct:   205 ADV-DYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGV 263

Query:   260 LMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSL 293
             ++ Y ++ + ++  A+ GYWAFGN  + NIL +L
Sbjct:   264 VVAYIIVALCYFPVALVGYWAFGNHVDDNILITL 297

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 82/276 (29%), Positives = 131/276 (47%)

Query:    31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA 90
             W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+++ M ++ +  E  
Sbjct:    38 WYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFE-- 95

Query:    91 GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYP 146
             G+R  R+ EL     G     Y V+ +Q  + T   I  ++  GE L    Q+   D Y 
Sbjct:    96 GKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGD-YE 154

Query:   147 NGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
                LK+  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G + N 
Sbjct:   155 CRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNV 214

Query:   207 PPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQATL--AP--PATGKMVKGLLMC 262
                 Y   ++                   G+ ++ EIQAT+   P  P+   M KG ++ 
Sbjct:   215 E-YGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAIVA 273

Query:   263 YSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNG 298
             Y ++   ++  A+ G+W FGN    NILK+L    G
Sbjct:   274 YIIVAFCYFPVALVGFWTFGNNVEENILKTLRGPKG 309

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 81/272 (29%), Positives = 134/272 (49%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L LPY    LGWG G   L +   +T Y+ + M ++  H   
Sbjct:    37 KWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEM--HEMV 94

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLY 145
              G+R  R+ EL     G     Y V+  Q  +  GV I  ++  G+ L    +++  D  
Sbjct:    95 PGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCK 154

Query:   146 PNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 205
             P   +KL  FI +   V  VLS LP F+S+  ++L + ++SL YS +   +  + G  ++
Sbjct:   155 P---IKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQED 211

Query:   206 APPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQATL--AP--PATGKMVKGLLM 261
                  Y  +++                   G+ ++ EIQAT+   P  P+ G M +G+++
Sbjct:   212 VQ-YGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIV 270

Query:   262 CYSVIFVTFYSAAVSGYWAFGNESNSNILKSL 293
              Y V+ + ++  A+ GY+ FGN    NIL SL
Sbjct:   271 AYIVVALCYFPVALVGYYIFGNGVEDNILMSL 302

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 79/271 (29%), Positives = 135/271 (49%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +T Y+ + M ++  H   
Sbjct:    32 KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQMVEM--HEIV 89

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-G 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G  L+ ++  + P+  
Sbjct:    90 PGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCK 149

Query:   149 SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPP 208
              ++   +I +   V  V+S LP F+S+  I+L + ++SL YS +   A ++ G     P 
Sbjct:   150 EIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVH---PD 206

Query:   209 KDYSLESSKXXXXXXXXXXXXX--XXXXXGNGILPEIQATL--AP--PATGKMVKGLLMC 262
              DYS  +S                     G+ ++ EIQAT+   P  P+   M +G+++ 
Sbjct:   207 VDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVA 266

Query:   263 YSVIFVTFYSAAVSGYWAFGNESNSNILKSL 293
             Y V+ + ++  A  GY+ FGN  + NIL +L
Sbjct:   267 YIVVAICYFPVAFLGYYIFGNSVDDNILITL 297

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 77/271 (28%), Positives = 133/271 (49%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +TFY+ + M ++  H   
Sbjct:    32 KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITFYTLWQMVQM--HEMV 89

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-G 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G+ L+ ++  L  +  
Sbjct:    90 PGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCK 149

Query:   149 SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPP 208
             +++   +I +   +  VL+ LP F+S+  ++L + ++SL YS +     +  G   N   
Sbjct:   150 NIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNV-- 207

Query:   209 KDYSLESSKXXXXXXXXXXXXX--XXXXXGNGILPEIQATL--APPATGK--MVKGLLMC 262
              DYS  +S                     G+ ++ EIQAT+   P    K  M KG+++ 
Sbjct:   208 -DYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVA 266

Query:   263 YSVIFVTFYSAAVSGYWAFGNESNSNILKSL 293
             Y V+ + ++  A   Y+ FGN  + NIL +L
Sbjct:   267 YIVVAICYFPVAFVCYYIFGNSVDDNILMTL 297

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 9.5e-27, P = 9.5e-27
 Identities = 80/288 (27%), Positives = 135/288 (46%)

Query:    11 LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG 70
             LE  ++ D           +WW++ FH  TA+VG  +L LP+    LGWG G   L +  
Sbjct:    25 LERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSW 84

Query:    71 FVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAI 130
              +T Y+ + M ++  H    G+R  R+ EL     G     Y ++  Q  +  GV I  +
Sbjct:    85 IITLYTLWQMVEM--HEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYM 142

Query:   131 LLAGECLQIMYSDLYPNGS-LKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY 189
             +  G+ L+  +     + S ++L  FI +      VLS LP F+S+  ++LV+ ++SL Y
Sbjct:   143 VTGGQSLKKFHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSY 202

Query:   190 SFLVVGACINAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQATL-- 247
             S +   A    G  ++     Y   ++                   G+ ++ EIQAT+  
Sbjct:   203 STIAWTATAAKGVQEDVQ-YGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQATIPS 261

Query:   248 AP--PATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSL 293
              P  P+ G M +G+++ Y V+ + ++  A+ GY  FGN    N+L SL
Sbjct:   262 TPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVLMSL 309

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 76/273 (27%), Positives = 131/273 (47%)

Query:    28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
             + +W+++ FH  TA+VG  +L LP+    LGWG G   + +   +TFYS + M ++  H 
Sbjct:    36 EAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQL--HE 93

Query:    88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN 147
                G+R  R+ EL  +  G    ++ V+  Q  +     I   +  G+ L+     L+PN
Sbjct:    94 AVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPN 153

Query:   148 -GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
                ++   +I     + +VLSQ P F+S++ ++L++ L+S  YS +   A I  G     
Sbjct:   154 LEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHR- 212

Query:   207 PPKDYSLESSKXXXXXXXXXXX--XXXXXXXGNGILPEIQATL--AP--PATGKMVKGLL 260
              P  Y +                        G+ ++ EIQAT+   P  P+   M KG++
Sbjct:   213 -PSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVV 271

Query:   261 MCYSVIFVTFYSAAVSGYWAFGNESNSNILKSL 293
             + Y ++ + +   A+SGYWAFG     ++L SL
Sbjct:   272 VAYIIVIICYLFVAISGYWAFGAHVEDDVLISL 304

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2044835 ProT3 "proline transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 81/276 (29%), Positives = 134/276 (48%)

Query:    27 SKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLD 85
             S   W+ A F LTT+I    +L     V   LGW  G   L +   ++ Y+  L++K+  
Sbjct:    26 SSDSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKL-- 83

Query:    86 HCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTG-VGIGAILLAGECLQIMYSDL 144
             H E  G+RHIR+R+LA  + G     Y + ++   +N   +  G I+LAG  L+ +Y   
Sbjct:    84 H-EFGGKRHIRYRDLAGFIYGR--KAYCLTWVLQYVNLFMINCGFIILAGSALKAVYVLF 140

Query:   145 YPNGSLKLYEFIAMVTVVMIVLS-QLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS 203
               + ++KL  FIA+  ++  V +  +P   +L     VS +LSL Y  +VV   ++    
Sbjct:   141 RDDHAMKLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIY--IVVAIVLSVKDG 198

Query:   204 KNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQATLAPPATGKMVKGLLMCY 263
               AP +DY ++ S                     G+LPEIQAT+  P    M+K L   +
Sbjct:   199 VKAPSRDYEIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQATVKQPVVKNMMKALYFQF 258

Query:   264 SVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGP 299
             +V  +  ++    GYWA+G+ ++  +L ++   NGP
Sbjct:   259 TVGVLPMFAVVFIGYWAYGSSTSPYLLNNV---NGP 291

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI;RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L4X4	GAT2_ARATH	No assigned EC number	0.8256	0.9561	0.7234	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002452001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (455 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-38
PLN03074	473	PLN03074, PLN03074, auxin influx permease; Provisi	3e-06
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	2e-05

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  141 bits (358), Expect = 1e-38
 Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH- 86
               W A F+L  AI+G  +L+LPY F+ LGW  G   L ++G ++ Y+ +L+ +   + 
Sbjct: 2   TISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYV 61

Query: 87  CEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP 146
            +  G+R   + +L   + G       ++F       GV I  ++ AG+ L  ++   + 
Sbjct: 62  DKVKGKRRKSYGDLGYRLFG-PKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 147 NGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
              + L  FI +  ++ I LS +P   +L  ++LV+ + SL    LV+        +   
Sbjct: 121 TCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQG 180

Query: 207 PPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQATLA-PPATGKMVKGLLMCYSV 265
                +  + K AR+F A     I+ A  G+ +L  IQ T+  P     M K LL    +
Sbjct: 181 VGSLGAKTNIKLARLFLAIG--IIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIII 238

Query: 266 IFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLF 319
           + V +    + GY AFGN    NIL +L            +I +A + ++L L 
Sbjct: 239 VTVLYILVGLVGYLAFGNNVKGNILLNLPK-------SDWLIDIANLLLVLHLL 285

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 71/290 (24%), Positives = 126/290 (43%), Gaps = 46/290 (15%)

Query: 29  GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKV-LDH- 86
           G  + A F   +  V   +LTLPY F  LG   G       G +  ++ YL+S + +++ 
Sbjct: 46  GSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYR 105

Query: 87  --CEKAG---RRH-IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIM 140
              E+     + H I++ E+   +LG  W    + F  T           LL G  +Q++
Sbjct: 106 ARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCT----------FLLFGSVIQLI 155

Query: 141 --YSDLY---PNGSLKLYEFI----AMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSF 191
              S++Y    N   + + +I       TV       +P+FH+ R  + + LL++   ++
Sbjct: 156 ACASNIYYINDNLDKRTWTYIFGACCATTVF------IPSFHNYRIWSFLGLLMTTYTAW 209

Query: 192 LVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFG-NGILPEIQATLAPP 250
            +  A ++ G  +         + S   ++   FT  + I   FG + +  EI   +  P
Sbjct: 210 YMTIAALSHGQVEGV-------KHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP 262

Query: 251 ATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNE--SNSNILKSLMPDNG 298
              K +  L     V+ +T  S A + YWAFG+E  ++SN   SL+P +G
Sbjct: 263 QKFKYIY-LAATLYVLTLTLPS-AAAVYWAFGDELLTHSNAF-SLLPRSG 309

Length = 473

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 63/307 (20%), Positives = 112/307 (36%), Gaps = 21/307 (6%)

Query: 42  IVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101
            +G  +L LP  F G G+  G   L +   +T+ S  L+ + L               L 
Sbjct: 22  AIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSS---PNGKASITSLV 78

Query: 102 ADVLGSGW-----MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI 156
            D LG        + YF       +   VGIG +L +     +           KL   I
Sbjct: 79  EDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLAS----FLGNQFGLNPLPRKLGSLI 134

Query: 157 AMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESS 216
               +V+  LS L T   L+  +L+     +    LVV    +   +       ++L S+
Sbjct: 135 --FALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANL-----FALPSA 187

Query: 217 KSARIFSAFTSISIIAAIFG-NGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAV 275
             +       +I +    FG +G +P +   +   +   + K +L+   +  V +     
Sbjct: 188 SQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGF 247

Query: 276 SGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFA-IGLVSPQFHSSLQL 334
             +  FG+    NIL +   +     A   VI   ++ + L +FA   + +      L L
Sbjct: 248 FVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGL 307

Query: 335 FQFLAKM 341
           F+ LA +
Sbjct: 308 FEGLADL 314

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.97
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.97
PRK10483	414	tryptophan permease; Provisional	99.85
PRK09664	415	tryptophan permease TnaB; Provisional	99.84
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.84
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.83
PRK15132	403	tyrosine transporter TyrP; Provisional	99.81
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.7
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.65
PRK11021	410	putative transporter; Provisional	99.28
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.27
TIGR00909	429	2A0306 amino acid transporter.	99.25
PRK10655	438	potE putrescine transporter; Provisional	99.24
KOG3832	319	consensus Predicted amino acid transporter [Genera	99.2
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.18
TIGR00912	359	2A0309 spore germination protein (amino acid perme	99.16
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.15
PRK10644	445	arginine:agmatin antiporter; Provisional	99.13
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.13
PRK10249	458	phenylalanine transporter; Provisional	99.09
PRK11387	471	S-methylmethionine transporter; Provisional	99.09
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.05
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.99
PRK10836	489	lysine transporter; Provisional	98.97
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.96
TIGR00913	478	2A0310 amino acid permease (yeast).	98.95
PRK10238	456	aromatic amino acid transporter; Provisional	98.95
PRK15049	499	L-asparagine permease; Provisional	98.95
PRK10580	457	proY putative proline-specific permease; Provision	98.94
TIGR00930	953	2a30 K-Cl cotransporter.	98.94
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.92
PRK10746	461	putative transport protein YifK; Provisional	98.92
TIGR00911	501	2A0308 L-type amino acid transporter.	98.9
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.9
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.88
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.87
KOG1287	479	consensus Amino acid transporters [Amino acid tran	98.83
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.72
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.63
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.37
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.25
PRK15238	496	inner membrane transporter YjeM; Provisional	98.24
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	98.22
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	98.2
PRK11375	484	allantoin permease; Provisional	98.14
COG3949	349	Uncharacterized membrane protein [Function unknown	98.11
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.05
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	98.02
KOG1286	554	consensus Amino acid transporters [Amino acid tran	97.98
COG0833	541	LysP Amino acid transporters [Amino acid transport	97.9
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.89
PRK09442	483	panF sodium/panthothenate symporter; Provisional	97.65
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	97.57
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	97.49
PRK11017	404	codB cytosine permease; Provisional	97.42
TIGR00813	407	sss transporter, SSS family. have different number	97.35
PRK12488	549	acetate permease; Provisional	97.32
PRK09395	551	actP acetate permease; Provisional	97.21
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	97.14
COG1457	442	CodB Purine-cytosine permease and related proteins	97.02
KOG2466	572	consensus Uridine permease/thiamine transporter/al	96.99
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	96.72
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	96.32
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	96.27
COG1966	575	CstA Carbon starvation protein, predicted membrane	96.16
PRK15015	701	carbon starvation protein A; Provisional	96.16
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	95.99
PRK15419	502	proline:sodium symporter PutP; Provisional	95.83
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	95.8
KOG1289	550	consensus Amino acid transporters [Amino acid tran	95.69
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	95.32
KOG1288	945	consensus Amino acid transporters [Amino acid tran	95.26
KOG2083	643	consensus Na+/K+ symporter [Inorganic ion transpor	95.18
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	95.17
COG1953	497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	94.37
PRK10484	523	putative transporter; Provisional	94.21
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	93.72
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	93.68
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	91.19
COG4147	529	DhlC Predicted symporter [General function predict	90.98
PRK15433	439	branched-chain amino acid transport system 2 carri	90.4
PRK15433	439	branched-chain amino acid transport system 2 carri	89.92
PF01566	358	Nramp: Natural resistance-associated macrophage pr	87.24
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	83.58
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	83.54
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	81.74

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.5e-47  Score=368.92  Aligned_cols=300  Identities=18%  Similarity=0.228  Sum_probs=246.5

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      -+.|+..++.+|++|+++|+|+|++|++|+++||+.|++++++++.++.||.++|.++.++   .+.+  +|+|++++++
T Consensus        57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~~--sY~~la~~~~  131 (467)
T PTZ00206         57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNIR--TYEGVARVLL  131 (467)
T ss_pred             cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCC--CHHHHHHHHh
Confidence            5667779999999999999999999999999999999999999999999999999999876   3444  9999999999


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc-CCC---Cc-hHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-PNG---SL-KLYEFIAMVTVVMIVLSQLPTFHSLRHINL  180 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~~---~~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~  180 (342)
                      || +|++++++.+.++++|+|++|+++.+|.++.+++... ++.   .. +...+.++..++++|++++|++++|+++|.
T Consensus       132 G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~  210 (467)
T PTZ00206        132 GP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST  210 (467)
T ss_pred             CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence            99 7999999999999999999999999999999876421 110   01 112233456678999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcc---hh-hHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330          181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSK---SA-RIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM  255 (342)
Q Consensus       181 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~  255 (342)
                      +++.++++.++++++.++.++.+++.+..+...++..   .. ...+.+.++|+++||| ||.+.+++++|||+|+.+|+
T Consensus       211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~  290 (467)
T PTZ00206        211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF  290 (467)
T ss_pred             HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH
Confidence            9998777776666666665443322111111000000   00 1136889999999999 99999999999999998889


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHH
Q 019330          256 VKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLF  335 (342)
Q Consensus       256 ~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~  335 (342)
                      .+++..++.+++++|..+|++||++||+++++|++.|+++.+++      ...+++++.++.++.+||++.+|+|+.+++
T Consensus       291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~------~~~v~~~~~~~~v~~sypL~~~p~r~~i~~  364 (467)
T PTZ00206        291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEP------AIMVGFVGVLVKLFVSYALLGMACRNALYD  364 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCc------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999654433      577888889999999999999999999887


Q ss_pred             HH
Q 019330          336 QF  337 (342)
Q Consensus       336 ~~  337 (342)
                      .+
T Consensus       365 ~~  366 (467)
T PTZ00206        365 VI  366 (467)
T ss_pred             Hh
Confidence            54

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=8.6e-48  Score=361.67  Aligned_cols=302  Identities=31%  Similarity=0.546  Sum_probs=271.2

Q ss_pred             eeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccc-cccCcccccHHHHHH
Q 019330           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAA  102 (342)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~-~~~~~~~~sy~~l~~  102 (342)
                      -.+|++||+++.+|.++.++|.|+|+|||++++.||+.|+++++..++++.||..+|.+|.+.+ .+.++|+.+|+|+++
T Consensus        33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~  112 (437)
T KOG1303|consen   33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ  112 (437)
T ss_pred             ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence            3477789999999999999999999999999999999999999999999999999999999875 456677789999999


Q ss_pred             HHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCC-CchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 019330          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (342)
Q Consensus       103 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~-~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~  181 (342)
                      ++||++ +++++.+.+.+.++|+|+.|++..+|++..+++..+.+. ..+.+.|+++++++.+|++++||++.+++.|..
T Consensus       113 ~afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~  191 (437)
T KOG1303|consen  113 AAFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLV  191 (437)
T ss_pred             HHhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHH
Confidence            999995 589999999999999999999999999999999877665 555678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330          182 SLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL  260 (342)
Q Consensus       182 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~  260 (342)
                      +.++++.+..+.+..++.++.+.+.+..++.-.++.+.    .++++|+++|+| +|+++||||++||+|.+  |+|++.
T Consensus       192 ~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~----~f~a~g~iaFaf~gH~v~peIq~tMk~p~~--f~~~~l  265 (437)
T KOG1303|consen  192 GAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT----VFTALGIIAFAYGGHAVLPEIQHTMKSPPK--FKKALL  265 (437)
T ss_pred             HHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc----hhhhhhheeeeecCCeeeeehHhhcCCchh--hhhHHH
Confidence            99999999999999888888665443333333322211    189999999999 99999999999999997  899999


Q ss_pred             HHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHhh
Q 019330          261 MCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLA  339 (342)
Q Consensus       261 ~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~  339 (342)
                      +++.+++.+|+..++.||++|||+++||++.|++       ++.|+...+++++.+|++.+|+++.+|+.+.+|...-.
T Consensus       266 is~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~-------~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~  337 (437)
T KOG1303|consen  266 ISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ-------PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGV  337 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccchhhhhccc-------CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhcc
Confidence            9999999999999999999999999999999997       25789999999999999999999999999999986543

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=7.3e-44  Score=329.97  Aligned_cols=296  Identities=16%  Similarity=0.212  Sum_probs=257.0

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccc-cccCcccccHHHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAADV  104 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~-~~~~~~~~sy~~l~~~~  104 (342)
                      ++..|..++..|++|.++|+|+|++|++|+++||+.|.+..+++++++.||++.+++|.++. ++.+....+|++.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            34458899999999999999999999999999999999999999999999999999998763 44444446888887766


Q ss_pred             h----------CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcc
Q 019330          105 L----------GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS  174 (342)
Q Consensus       105 ~----------G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~  174 (342)
                      +          |+ ++|.++++.+.++++|.|++|++++++.++++.+. +.+..++.+.|+++..+..++++++|+++.
T Consensus       124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~-~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~  201 (449)
T KOG1304|consen  124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE-HSPGVLSVRLYILIQLPPLLLLNLIRNLKI  201 (449)
T ss_pred             HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc-cCCCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4          55 78899999999999999999999999999999983 223467788899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCcccc
Q 019330          175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATG  253 (342)
Q Consensus       175 l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~  253 (342)
                      |+.+|.+++++.+....++.++.+....    +.++.+..    .++.++...+|+.+||| +++++.|++++||+|++ 
T Consensus       202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~----~~~~~~~~----~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~-  272 (449)
T KOG1304|consen  202 LSPFSLFANVFILVGLAIIMYYLVQDLP----PTSDLPAV----TGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK-  272 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccC----Cccccccc----cchhhhHHHHHHHHHHhccceEEEehhhcccChhh-
Confidence            9999999999888777666666555443    11232322    22457888899999999 99999999999999997 


Q ss_pred             chh---hHHHHHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhh
Q 019330          254 KMV---KGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHS  330 (342)
Q Consensus       254 ~~~---~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~  330 (342)
                       +.   +++..++.++.++|..+|++||++|||++++.++.|+|+        +|+.+.+++++++.++.+||+|.+|..
T Consensus       273 -F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~--------~~l~~~Vkl~~ai~I~ls~pLQ~yv~~  343 (449)
T KOG1304|consen  273 -FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ--------EILSQTVKLLLAIAIFLTYPLQFYVPI  343 (449)
T ss_pred             -cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc--------cHHHHHHHHHHHHHHHHcCchhhhhhH
Confidence             56   999999999999999999999999999999999999994        578999999999999999999999999


Q ss_pred             hhHHHHHhhhc
Q 019330          331 SLQLFQFLAKM  341 (342)
Q Consensus       331 ~~~~~~~~~~~  341 (342)
                      +++|++..+|.
T Consensus       344 eIi~~~i~~k~  354 (449)
T KOG1304|consen  344 EIIEPGIRKKF  354 (449)
T ss_pred             HHHHHhHHHhc
Confidence            99999877664

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=1.8e-45  Score=351.12  Aligned_cols=301  Identities=24%  Similarity=0.397  Sum_probs=256.2

Q ss_pred             cCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhC
Q 019330           27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG  106 (342)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G  106 (342)
                      +|+|++++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.++|.+++++.+ ++++..+|+|++++++|
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~~~~~~y~~l~~~~~G   79 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NGTGRRSYGDLARRAFG   79 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-ccccccccccccccccc
Confidence            68999999999999999999999999999999999999999999999999999999988643 22345699999999999


Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 019330          107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS  186 (342)
Q Consensus       107 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~  186 (342)
                      | ++++++++++.+.++|.+++|++..+|.++++.+...++...+...+.++..++++|++++|++++++++|.++++++
T Consensus        80 ~-~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~  158 (409)
T PF01490_consen   80 P-KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI  158 (409)
T ss_pred             c-cccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence            9 578999999999999999999999999999998865544455666677788899999999999999999999999876


Q ss_pred             HHHHHHhhhhhhccCcCCCCCCCCccccC-cchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccc-cchhhHHHHHH
Q 019330          187 LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPAT-GKMVKGLLMCY  263 (342)
Q Consensus       187 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~-~~~~~~~~~~~  263 (342)
                      ++...+.+.........+.   .+.+..+ .+..++.+++.++|+++|+| ||.++|++++|||+|++ +|++++...++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~  235 (409)
T PF01490_consen  159 FYFIVIVVIYIISYGPGEP---SGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISM  235 (409)
T ss_pred             ceeeeeecceeeeeecccc---cccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehh
Confidence            6542233332222221111   1111111 12345678999999999999 99999999999999998 67889999999


Q ss_pred             HHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHhh
Q 019330          264 SVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLA  339 (342)
Q Consensus       264 ~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~  339 (342)
                      .+++++|+.+|+.||++||+++++|++.|+++++       +...++++++.++++.+||++.+|.++.+|+.+.+
T Consensus       236 ~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~-------~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~  304 (409)
T PF01490_consen  236 IICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD-------VLIIIARILLVISLLLSYPLQLFPARNSLENLLFK  304 (409)
T ss_pred             hhhhHHhhhhhhcccceeeeeecchhhhcCCCcc-------cccccccccchhhhhhccccccchhHhhhhhheec
Confidence            9999999999999999999999999999999743       47899999999999999999999999999996654

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-38  Score=294.84  Aligned_cols=303  Identities=17%  Similarity=0.216  Sum_probs=250.6

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      .++.|.+++++|+.|+++|+|++++|++|++.|++.|+++++++++++.++.+++.++.+.   .+.+  +|++++++.+
T Consensus         3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~---~~~~--ty~~l~~~~~   77 (411)
T KOG1305|consen    3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK---SGER--TYSSLGDLIF   77 (411)
T ss_pred             CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh---cCCC--CHHHHHHHHc
Confidence            4556789999999999999999999999999999999999999999999999999999887   4455  9999999999


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc-CCC-C--chHH-H-HHHHHHHHHHHHhcCCCCcchhHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-PNG-S--LKLY-E-FIAMVTVVMIVLSQLPTFHSLRHIN  179 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~~-~--~~~~-~-~~~i~~~i~~pl~~~~~l~~l~~~s  179 (342)
                      |+ .|+....+.......| +++|+++++|.++.+..... +++ .  +..+ . +++....+++|+++.|+++++++.|
T Consensus        78 g~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS  155 (411)
T KOG1305|consen   78 GK-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTS  155 (411)
T ss_pred             CC-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence            99 6866666666666666 69999999999997665432 111 1  2222 2 4566779999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhH
Q 019330          180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKG  258 (342)
Q Consensus       180 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~  258 (342)
                      .++...+++.+++++++.+..... .   .+..........+++.+.++++++|+| ||.|..++++|||+|+++|++++
T Consensus       156 ~~s~~~~~~fv~~vv~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v  231 (411)
T KOG1305|consen  156 ALSLASVVYFVVLVVYKYFQGPCA-L---GRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV  231 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc-c---CCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence            999998888888888777664420 0   011111111122358999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHh
Q 019330          259 LLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFL  338 (342)
Q Consensus       259 ~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~  338 (342)
                      ...+...+.++|..+|.+||+.|||.+.+|++.+++.+++. .-..+....++..++++++..+|+..+|+|.+++++..
T Consensus       232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~-~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~  310 (411)
T KOG1305|consen  232 SNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNN-LLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF  310 (411)
T ss_pred             HHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccch-hHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence            99999999999999999999999999999999999976543 11225678999999999999999999999999988665


Q ss_pred             hh
Q 019330          339 AK  340 (342)
Q Consensus       339 ~~  340 (342)
                      ++
T Consensus       311 ~~  312 (411)
T KOG1305|consen  311 PY  312 (411)
T ss_pred             cc
Confidence            43

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=4.7e-36  Score=288.17  Aligned_cols=289  Identities=20%  Similarity=0.255  Sum_probs=233.2

Q ss_pred             eeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccc-cccCc-----c-c-c
Q 019330           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGR-----R-H-I   95 (342)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~-~~~~~-----~-~-~   95 (342)
                      ..+++++..++.+|+++..+|+|+|+||++|+++||++|++.+++.++++.||.+++.+++..+ ++.++     + + .
T Consensus        41 ~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~  120 (473)
T PLN03074         41 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI  120 (473)
T ss_pred             cccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence            4466778999999999999999999999999999999999999999999999999999874321 11111     1 1 3


Q ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (342)
Q Consensus        96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l  175 (342)
                      +|.|+++..+|| +++.+..+...+++++.|+.|++..++.+..+-      ...+.+.|++++.++.+|++++|+++++
T Consensus       121 ~~~e~~~~~~G~-~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~------~~~~~~~~~~i~~~v~~~~~~i~sl~~l  193 (473)
T PLN03074        121 QWFEVLDGLLGP-YWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN------DNLDKRTWTYIFGACCATTVFIPSFHNY  193 (473)
T ss_pred             HHHHHHHHhcCh-hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC------CCcCCCeEEeehHHHHHHHHHccCHHHH
Confidence            689999999999 466888888999999999999998777666552      2455667878888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330          176 RHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK  254 (342)
Q Consensus       176 ~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~  254 (342)
                      +++|.+|+.++++..+.+++..+..+..+     +.+  +..+.++..++.++++++|+| +|.++|++++|||+|++  
T Consensus       194 ~~~S~ig~~~tl~~av~i~i~~i~~~~~~-----~~~--~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~--  264 (473)
T PLN03074        194 RIWSFLGLLMTTYTAWYMTIAALSHGQVE-----GVK--HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--  264 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCC--CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhc--
Confidence            99999999876665554444444433211     111  111234557888899999999 99999999999999987  


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhhhccCCCCc--hhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhh
Q 019330          255 MVKGLLMCYSVIFVTFYSAAVSGYWAFGNESN--SNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSL  332 (342)
Q Consensus       255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~--~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~  332 (342)
                      ++++...+....+++|+.+|+.||++|||+++  ++.+.|+|++       . ...+++++.+++++.+||++..|+.+.
T Consensus       265 F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-------~-~~~~~~~~~~i~~~~sy~l~~~p~~~~  336 (473)
T PLN03074        265 FKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-------G-WRDAAVILMLIHQFITFGFACTPLYFV  336 (473)
T ss_pred             ccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-------h-HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            67888899999999999999999999999975  4667778741       2 367889999999999999999999999


Q ss_pred             HHHH
Q 019330          333 QLFQ  336 (342)
Q Consensus       333 ~~~~  336 (342)
                      +|+.
T Consensus       337 ~e~~  340 (473)
T PLN03074        337 WEKA  340 (473)
T ss_pred             HHHH
Confidence            9874

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.97  E-value=4.6e-30  Score=243.38  Aligned_cols=303  Identities=17%  Similarity=0.104  Sum_probs=237.8

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      .+.+.+..++++++.++++|+|+|++|++++..|+.++++++++.+.+++++.+++.|+..+.+   +++.++.+++++.
T Consensus         5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~---~~~~~~~~~~~~~   81 (415)
T COG0814           5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSP---NGKASITSLVEDY   81 (415)
T ss_pred             ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcccHHHHHHHH
Confidence            4666778999999999999999999999999999999999999999999999999999998742   2224899999999


Q ss_pred             hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      +||+ +++++++...+.+++.+.+|.+..++.+++.++.....+......+.+++..++.++++.++...++..+.+...
T Consensus        82 ~G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~  160 (415)
T COG0814          82 LGKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG  160 (415)
T ss_pred             hCcc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence            9995 679999999999999999999999999999998632222244455667777888889999999999999999998


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCCCCccccCcc-hhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC  262 (342)
Q Consensus       185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~  262 (342)
                      .+.+.++...+....-..+      .....+.. +..+.....++|+++||| ||+++|++++|||++++++.+|+...+
T Consensus       161 ~v~~~~~l~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~  234 (415)
T COG0814         161 KVIYLVLLVVYLIPHWNPA------NLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIG  234 (415)
T ss_pred             HHHHHHHHHHHHhcccCHH------HHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHH
Confidence            7666655544433221110      00011111 234568899999999999 999999999999998886699999999


Q ss_pred             HHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCC------CChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHH
Q 019330          263 YSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPS------LAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQ  336 (342)
Q Consensus       263 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~------~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~  336 (342)
                      ..+..++|...++++|..+|+.+++|+++++++++...      ....+......++..+.+..||--....++|.+++.
T Consensus       235 ~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~  314 (415)
T COG0814         235 SLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADL  314 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHH
Confidence            99999999999999999999999999999997644321      112224444555555555565555555555555554


Q ss_pred             H
Q 019330          337 F  337 (342)
Q Consensus       337 ~  337 (342)
                      +
T Consensus       315 ~  315 (415)
T COG0814         315 F  315 (415)
T ss_pred             H
Confidence            3

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-32  Score=240.45  Aligned_cols=292  Identities=17%  Similarity=0.181  Sum_probs=242.8

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccC---cccccHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAG---RRHIRFRELAA  102 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~---~~~~sy~~l~~  102 (342)
                      +++-+.++|..|+.|++-|.=+++||++....||. ++..++.++.+++||..+|++|.......+   +...+|.+++.
T Consensus       114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~  192 (524)
T KOG4303|consen  114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD  192 (524)
T ss_pred             CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence            35568999999999999999999999999988887 999999999999999999999976521111   11359999999


Q ss_pred             HHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHH
Q 019330          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (342)
Q Consensus       103 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~  182 (342)
                      .+++++.|-..+.+.+.+....+|+.|++..+|.+..-++.    .+...+-|+++....++|++++|+++-.+.+|.+.
T Consensus       193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~----~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c  268 (524)
T KOG4303|consen  193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG----LSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC  268 (524)
T ss_pred             HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC----CCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence            99999888788999999999999999999999999988764    34566779999999999999999998888888777


Q ss_pred             HHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcc-hhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL  260 (342)
Q Consensus       183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~  260 (342)
                      .+.-++.=++++.++....       .|+.+.... ..+...+..++|+++|+| .|..+|.++..|++|++  +...+.
T Consensus       269 t~sH~viN~i~v~YCLs~~-------~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~--Fn~Ml~  339 (524)
T KOG4303|consen  269 TISHLVINLIMVLYCLSFV-------SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ--FNVMLK  339 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------hhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH--heeeee
Confidence            7665555556666666544       133322111 122335677889999999 99999999999999998  455677


Q ss_pred             HHHHHHHHHHHHHhhHhhhccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHhh
Q 019330          261 MCYSVIFVTFYSAAVSGYWAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFLA  339 (342)
Q Consensus       261 ~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~~  339 (342)
                      ++-+...++-..+|..||++|+|.++..|.+|+|+.+        ...+++++.++.-+.|||+-.+.+.+.+|+.+..
T Consensus       340 WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs--------fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~  410 (524)
T KOG4303|consen  340 WSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS--------FKILVNLFLVVKALLSYPLPFYAAVELLENNLFL  410 (524)
T ss_pred             hHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc--------hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhc
Confidence            8888888999999999999999999999999999532        6888999999999999999999999999986654

>PRK10483 tryptophan permease; Provisional

Probab=99.85  E-value=5.4e-19  Score=165.69  Aligned_cols=294  Identities=13%  Similarity=0.069  Sum_probs=207.9

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      .+++++.+.+...+..+.||+|+|++|.+.++.|++++++++++++.+..||..++.|+..+.    ++..++.+++|+.
T Consensus         7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~----~~g~~~~tma~~~   82 (414)
T PRK10483          7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY----RIGSSFDTITKDL   82 (414)
T ss_pred             ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHH
Confidence            477889999999999999999999999999999999999999999999999999999997652    2345899999999


Q ss_pred             hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC--CCcchhHHHHHH
Q 019330          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP--TFHSLRHINLVS  182 (342)
Q Consensus       105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~s~~~  182 (342)
                      +|| .|+++..++..+..|+.+++|+...++.+++.++..  +...+...-.++++++.-.+.+..  ..+.+..+-..+
T Consensus        83 LG~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~  159 (414)
T PRK10483         83 LGK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGA  159 (414)
T ss_pred             cCh-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            999 588999999999999999999999999999998652  122233333455555555565542  233333333333


Q ss_pred             HHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHH
Q 019330          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLM  261 (342)
Q Consensus       183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~  261 (342)
                      .+.++...+....   .+...++.  .+.+. .. ...+...+.+++++++|| .|+++|++.+.+++..+ |.+|++..
T Consensus       160 ~i~~f~~~~~~l~---~~i~~~~L--~~~~~-~~-~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~-kir~~I~i  231 (414)
T PRK10483        160 KVITFFLTFGSLL---GHVQPATL--FNVAE-SN-ASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPK-TIVKCLVY  231 (414)
T ss_pred             HHHHHHHHHHHHH---hhcCHHHH--hcccc-cc-chhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHH-HHHHHHHH
Confidence            3322222221211   11110000  00000 01 111335779999999999 99999999999886554 68999999


Q ss_pred             HHHHHHHHHHHHhhHhhhcc-----------CCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhh
Q 019330          262 CYSVIFVTFYSAAVSGYWAF-----------GNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHS  330 (342)
Q Consensus       262 ~~~~~~~~y~~~g~~gy~~f-----------g~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~  330 (342)
                      +..+..++|+..=......-           +++. +..+..+...    .+..+...+..++..+++.+||--....++
T Consensus       232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~----~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~  306 (414)
T PRK10483        232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGV----LNSRSLDLLLVVFSNFAVASSFLGVTLGLF  306 (414)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999997433322222           2222 1111222211    123456678889999999999999999999


Q ss_pred             hhHHHHHh
Q 019330          331 SLQLFQFL  338 (342)
Q Consensus       331 ~~~~~~~~  338 (342)
                      |.+.+.+-
T Consensus       307 d~l~D~~k  314 (414)
T PRK10483        307 DYLADLFG  314 (414)
T ss_pred             HHHHHHhC
Confidence            99998653

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.84  E-value=1.3e-18  Score=162.91  Aligned_cols=297  Identities=13%  Similarity=0.059  Sum_probs=203.6

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      ++|++.+.+...+..+.||+|+|++|.+.++.|+.++++++++++.+..||..++.|++.+.    ++..++.+++|+.+
T Consensus         6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~----~~g~~l~tma~~~L   81 (415)
T PRK09664          6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY----PVGSSFNTITKDLI   81 (415)
T ss_pred             hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHc
Confidence            44557788999999999999999999999999999999999999999999999999997663    23458999999999


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~  185 (342)
                      || .|+++..++..+..++.+++|+...++.+++.++... +...+.....++++++.-++.+... +...+.+.+=+..
T Consensus        82 G~-~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~~~  158 (415)
T PRK09664         82 GN-TWNIISGITVAFVLYILTYAYISANGAIISETISMNL-GYHANPRIVGICTAIFVASVLWISS-LAASRITSLFLGL  158 (415)
T ss_pred             Ch-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHH
Confidence            99 5899999999999999999999999999999986411 1122223233555566666665532 4444443332222


Q ss_pred             HHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHH
Q 019330          186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYS  264 (342)
Q Consensus       186 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~  264 (342)
                      .+...+..+.....+...+..  .+.+........+...+.+++++++|| .|+++|++.+.+++..+ |.+|++..+..
T Consensus       159 ~ii~f~~~~~~l~~~i~~~~L--~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~-~~~kaIl~Gs~  235 (415)
T PRK09664        159 KIISFVIVFGSFFFQVDYSIL--RDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKD-KLIKSVVFGSL  235 (415)
T ss_pred             HHHHHHHHHHHHhhcccHHHH--hcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHH-HHHHHHHHHHH
Confidence            222211111111111110000  000100000001235778999999999 99999999999875543 57889999998


Q ss_pred             HHHHHHHHH--hhHhh---------hccCCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhH
Q 019330          265 VIFVTFYSA--AVSGY---------WAFGNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQ  333 (342)
Q Consensus       265 ~~~~~y~~~--g~~gy---------~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~  333 (342)
                      +..++|+.-  ++.|-         ..-|++++.-+.. +..+    ....|...+..++..+++.+||--....++|.+
T Consensus       236 IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s-~~~~----~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l  310 (415)
T PRK09664        236 LALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKS-FLGT----KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL  310 (415)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHH-HHhh----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888632  22231         2233333332222 1111    124577888999999999999999999999999


Q ss_pred             HHHH
Q 019330          334 LFQF  337 (342)
Q Consensus       334 ~~~~  337 (342)
                      .+.+
T Consensus       311 ~D~~  314 (415)
T PRK09664        311 ADLF  314 (415)
T ss_pred             HHHh
Confidence            9865

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.84  E-value=5.1e-19  Score=167.42  Aligned_cols=291  Identities=14%  Similarity=0.075  Sum_probs=207.2

Q ss_pred             HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHH
Q 019330           35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV  114 (342)
Q Consensus        35 ~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v  114 (342)
                      ...++++++|+|++++|..+++.|+..+.+.+++.+..+.++...+.|...+.|  +  ..++.+.+++.+|| ++.+++
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p--~--~~~~~~~~~~~~G~-~~g~~~   77 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP--G--GASFNTIAKDLLGK-TGNIIA   77 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C--CCCHHHHHHHHhCH-HHHHHH
Confidence            445679999999999999999999999999999999999999999999976532  2  23899999999999 677999


Q ss_pred             HHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhh
Q 019330          115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV  194 (342)
Q Consensus       115 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i  194 (342)
                      .+...+.++..+.+|.+..++.+.++++..... ........+++.+++.++... ..+...+++.+.+...+...++.+
T Consensus        78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~~-G~~~~~~v~~i~~~~~l~~l~~~i  155 (381)
T TIGR00837        78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFGF-PWSARAIVLIFTVLFGSFVWL-STSAVDRITRVLIFGKIIAFALVF  155 (381)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988642211 122222333344444555444 567777887777765554443333


Q ss_pred             hhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHH
Q 019330          195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSA  273 (342)
Q Consensus       195 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~  273 (342)
                      .....+...++.  .  +.. ..+..+.+...+++...++| +|.+++++.+|+++| +||.+|++.++..++.++|++.
T Consensus       156 i~~~~~~~~~~~--~--~~~-~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~  229 (381)
T TIGR00837       156 SGLLPHVKGDLL--L--DVA-LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILW  229 (381)
T ss_pred             HHHHhhccHHHH--h--cCc-cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            333332211110  0  000 00113347889999999999 999999999999877 5579999999999999999988


Q ss_pred             hhHhhhccCCCCchhhhccCCCCCC------CCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHh
Q 019330          274 AVSGYWAFGNESNSNILKSLMPDNG------PSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFL  338 (342)
Q Consensus       274 g~~gy~~fg~~~~~~il~~~~~~~~------~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~  338 (342)
                      ........+.+.-.+...+.++.+.      ...+..|...+..++..+.+++|+.-...+.+|.+.+.|-
T Consensus       230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~  300 (381)
T TIGR00837       230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFK  300 (381)
T ss_pred             HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7776666554322221111111000      0012345677888999999999999999999999887553

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.83  E-value=3.1e-18  Score=161.63  Aligned_cols=293  Identities=14%  Similarity=0.089  Sum_probs=201.4

Q ss_pred             CChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCc
Q 019330           28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGS  107 (342)
Q Consensus        28 ~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~  107 (342)
                      +.+.+.+.+.+..+.+|+|+|+||.+.+..|..++++++++.+.+.+++..++.|...+.   + +..++.+++++.+||
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~---~-~~~~~~~~a~~~lG~   77 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT---P-EGSSLTSMAEKYLGK   77 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C-CCCCHHHHHHHHhCh
Confidence            567789999999999999999999999999999999999999999999999999987652   1 245999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 019330          108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL  187 (342)
Q Consensus       108 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~  187 (342)
                       .|+++..+...+..++.+.+|....++.+++.++.... ...+.....+++.++...+.... -+...+++.+-+...+
T Consensus        78 -~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n~~lv~~~i  154 (394)
T PF03222_consen   78 -KGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TDLSPWLSSLLFTIIFGGIVYFG-TKAVDRINRVLVFGMI  154 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence             57899999999999999999999999999999876321 12222222233333333333332 2223333322222222


Q ss_pred             HHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHH
Q 019330          188 GYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVI  266 (342)
Q Consensus       188 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~  266 (342)
                      ......+...+.+...++.     ...+....++...+.++++.++|| .|+++|++.+.+++..+ |.+|++.++..+.
T Consensus       155 ~~~~~l~~~~~p~~~~~~L-----~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~-k~~~ai~~Gs~i~  228 (394)
T PF03222_consen  155 ISFIILVVYLIPHWNPSNL-----LDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPK-KIRKAIIIGSLIP  228 (394)
T ss_pred             HHHHHHHHHHhhhcCHHHh-----hccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHH-HHHHHHHHHHHHH
Confidence            2111121221221111010     001112234567889999999999 99999999999986644 5899999999999


Q ss_pred             HHHHHHHhhHhhhcc-----------CCCCchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHH
Q 019330          267 FVTFYSAAVSGYWAF-----------GNESNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLF  335 (342)
Q Consensus       267 ~~~y~~~g~~gy~~f-----------g~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~  335 (342)
                      .++|+..-+..-..-           +++. +.+...+...    .++.+...+..++..+++.+||--....++|.+++
T Consensus       229 lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~-~~~~~~~~~~----~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d  303 (394)
T PF03222_consen  229 LVMYLLWVFSILGSLPREQFAEAIAQGGNV-SALVSALANV----SGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD  303 (394)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcCCCh-HHHHHHHHhh----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999986533322211           1111 1111111111    12456788889999999999999999999999998


Q ss_pred             HHh
Q 019330          336 QFL  338 (342)
Q Consensus       336 ~~~  338 (342)
                      .+-
T Consensus       304 ~~k  306 (394)
T PF03222_consen  304 LFK  306 (394)
T ss_pred             HHc
Confidence            663

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.81  E-value=1e-17  Score=157.69  Aligned_cols=288  Identities=16%  Similarity=0.116  Sum_probs=200.7

Q ss_pred             ChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcc
Q 019330           29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (342)
Q Consensus        29 ~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (342)
                      ++.+.+.+.+..+.+|+|+|+||.+.+..|.+++++++++++.+..|+.+++.|+..+.    ++..++.+++|+.+||+
T Consensus         3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~----~~~~~~~~~a~~~LG~~   78 (403)
T PRK15132          3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV----PADTGLGTLAKRYLGRY   78 (403)
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCCHHHHHHHHhChH
Confidence            46788999999999999999999999999999999999999999999999999976542    22358999999999995


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC--CCcchhHHHHHHHHHH
Q 019330          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP--TFHSLRHINLVSLLLS  186 (342)
Q Consensus       109 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~s~~~~~~~  186 (342)
                       |+++..+...+..+..+.+|....++.+++....+.++ ..+.....+.+.++.....+..  -.++...+-..+.+..
T Consensus        79 -g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~  156 (403)
T PRK15132         79 -GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIF  156 (403)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence             78999999999999999999999999998887653322 2233334444443333333332  1222222222222222


Q ss_pred             HHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHH
Q 019330          187 LGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSV  265 (342)
Q Consensus       187 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~  265 (342)
                      +..   .+...+.+...+       .+...+ .+....+.+++++.+|| .|+++|++.+.+++.. +|.+|++.++..+
T Consensus       157 ~~~---~~~~l~p~~~~~-------~L~~~~-~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~-~~~~k~i~~Gs~i  224 (403)
T PRK15132        157 LVV---MLALMMPHIHKV-------NLLTLP-LQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNI-RKLRWVFIIGSAI  224 (403)
T ss_pred             HHH---HHHHHHHhcCHH-------HHhcCC-ccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCH-HHHHHHHHHHHHH
Confidence            211   111111111100       011000 00013788999999999 9999999999987554 4689999999999


Q ss_pred             HHHHHHHHhhHhhhccCCCC----------chhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHH
Q 019330          266 IFVTFYSAAVSGYWAFGNES----------NSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLF  335 (342)
Q Consensus       266 ~~~~y~~~g~~gy~~fg~~~----------~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~  335 (342)
                      ..++|+..-......-+.+.          -+++++.+...    .+..|...++.++..+++.+||--....++|.+.+
T Consensus       225 ~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d  300 (403)
T PRK15132        225 PLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREV----VASPHVELAVHLFADLALATSFLGVALGLFDYLAD  300 (403)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHH----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999866555554443221          11233333321    12457788899999999999999999999999999


Q ss_pred             HHh
Q 019330          336 QFL  338 (342)
Q Consensus       336 ~~~  338 (342)
                      .+.
T Consensus       301 ~~~  303 (403)
T PRK15132        301 LFQ  303 (403)
T ss_pred             HHc
Confidence            763

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.70  E-value=7.5e-15  Score=137.95  Aligned_cols=296  Identities=11%  Similarity=-0.003  Sum_probs=194.4

Q ss_pred             HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHH
Q 019330           35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV  114 (342)
Q Consensus        35 ~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v  114 (342)
                      ...+..+.+|+|+|+||......|..++++++++...+++++...+.|...+   .+++..++.+++++.+||+ |+.+.
T Consensus        25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~---~~~~~~~i~~v~~~~lG~~-g~~i~  100 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLS---GSNPSGNITETVEEHFGKT-GGVVI  100 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCCCCCHHHHHHHHcChh-HHHHH
Confidence            4899999999999999999999999999999999999999999999998665   2223458999999999996 56899


Q ss_pred             HHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHHHHHH
Q 019330          115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPT--FHSLRHINLVSLLLSLGYSFL  192 (342)
Q Consensus       115 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~s~~~~~~~~~~~~~  192 (342)
                      .+...+..+..+.+|...+.+.+++.+.+..+..........+++.+++.......+  +.+...+-....+.++....+
T Consensus       101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~  180 (443)
T PRK13629        101 TFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISL  180 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888865543211122333333444444444444322  333333333333322222222


Q ss_pred             hhhhhhccCcCCCCCCCCccc-cCc-chhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCc-------c--ccchhhHHH
Q 019330          193 VVGACINAGFSKNAPPKDYSL-ESS-KSARIFSAFTSISIIAAIF-GNGILPEIQATLAPP-------A--TGKMVKGLL  260 (342)
Q Consensus       193 ~i~~~i~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p-------~--~~~~~~~~~  260 (342)
                      ..+   -+...++..+.+.+. +.. ..........+++++++|| .|+++|+....+|+.       +  ++|.+|++.
T Consensus       181 ~Li---P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~  257 (443)
T PRK13629        181 SLI---PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIIS  257 (443)
T ss_pred             HHH---HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            221   111000000000000 000 0011235788999999999 999999998884322       3  467899999


Q ss_pred             HHHHHHHHHHHHHhhHhhhccCCCC-------chhhhccCCCCCCCCCCh-----hHHHHHHHHHHHHHHhhhhhhcchh
Q 019330          261 MCYSVIFVTFYSAAVSGYWAFGNES-------NSNILKSLMPDNGPSLAP-----TSVIGLAVVFVLLQLFAIGLVSPQF  328 (342)
Q Consensus       261 ~~~~~~~~~y~~~g~~gy~~fg~~~-------~~~il~~~~~~~~~~~~~-----~~~~~i~~~~~~i~l~~s~pl~~~p  328 (342)
                      .+..+..++|+..-+.....-+++.       +.|++..+.+.-+.....     .+...+..++..+++.+||--....
T Consensus       258 ~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LG  337 (443)
T PRK13629        258 RASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLG  337 (443)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999977666666555432       122222222210000011     4577788888889999999999999


Q ss_pred             hhhhHHHHH
Q 019330          329 HSSLQLFQF  337 (342)
Q Consensus       329 ~~~~~~~~~  337 (342)
                      ++|.++-..
T Consensus       338 l~E~l~gl~  346 (443)
T PRK13629        338 TLEGLNGLI  346 (443)
T ss_pred             HHHHHHHHH
Confidence            999888644

>TIGR00814 stp serine transporter

Probab=99.65  E-value=7.9e-14  Score=131.61  Aligned_cols=288  Identities=9%  Similarity=-0.023  Sum_probs=195.5

Q ss_pred             HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHH
Q 019330           35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV  114 (342)
Q Consensus        35 ~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v  114 (342)
                      .+.+..+++|+|+|.+|....+.||+..++..++...+.+++..++.|..-..+   .+..++.|++++.|||+ +..+.
T Consensus         9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~---~p~~~i~~~~~~~fGk~-~G~ii   84 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK---NPCEDITEVVEEHFGKN-WGILI   84 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHcCHH-HHHHH
Confidence            688999999999999999999999998888888888888999998998854321   12348999999999995 55899


Q ss_pred             HHHHHHHHHhhHHHHHHhhhhhHHHHhhhh-cCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHh
Q 019330          115 IFIQTAINTGVGIGAILLAGECLQIMYSDL-YPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV  193 (342)
Q Consensus       115 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~-~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~  193 (342)
                      .+...+..+..+.+|....++.+++..... ..+..  .+....+..++.+-.......+.+.+++.+-+...+...+..
T Consensus        85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p--~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l  162 (397)
T TIGR00814        85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPP--LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLL  162 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998887652 22221  121222222222222333356666666666554333333333


Q ss_pred             hhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHh----hhcCCcc--ccchhhHHHHHHHHH
Q 019330          194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQ----ATLAPPA--TGKMVKGLLMCYSVI  266 (342)
Q Consensus       194 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~----~~m~~p~--~~~~~~~~~~~~~~~  266 (342)
                      ....+.+...++     ....+.....+.++..+++..++|| +|.++|+..    +|.++|+  ++|.+|+...+..+.
T Consensus       163 ~~~lip~~~~~~-----L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~  237 (397)
T TIGR00814       163 SLYLIPHWNGAN-----LTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLIL  237 (397)
T ss_pred             HHHHHHHcCHHH-----HhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence            333332221111     0000111112457899999999999 999999997    3344343  557889999999999


Q ss_pred             HHHHHHHhhHhhhccCCCC-c----h--hhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHH
Q 019330          267 FVTFYSAAVSGYWAFGNES-N----S--NILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQF  337 (342)
Q Consensus       267 ~~~y~~~g~~gy~~fg~~~-~----~--~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~  337 (342)
                      .++|+..-+......+++. .    +  +.+..+.+.    .+..+...+..++..+++.+||--....++|.++..+
T Consensus       238 ~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~----~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~  311 (397)
T TIGR00814       238 VATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANH----FNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV  311 (397)
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhh----cCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999877777666666443 1    1  122212211    1234566777888888999999999999999999866

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK11021 putative transporter; Provisional

Probab=99.28  E-value=1.8e-09  Score=103.24  Aligned_cols=229  Identities=13%  Similarity=0.183  Sum_probs=136.0

Q ss_pred             hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcch
Q 019330           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW  109 (342)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~  109 (342)
                      +.++++...+++|+|+|++.+|....+.+-..+++..++.+++.......+.|...+.|+++    ....-+++.+|+++
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~~   77 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPRL   77 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCchh
Confidence            46889999999999999999997665553235666667777777777777888776655444    34455777899977


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Q 019330          110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY  189 (342)
Q Consensus       110 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~  189 (342)
                      | +++.............+........+..+++.    ...... ...+..++.+-+...+..+...+++.+..+..+..
T Consensus        78 g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i  151 (410)
T PRK11021         78 G-RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW----SSWQLL-LAELLTLALLWLLNLRGASSSANLQTVIALLIVAL  151 (410)
T ss_pred             H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC----CCchHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            6 66655554432222233333334444444331    111111 11111122222223334444444444333221111


Q ss_pred             HHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHH
Q 019330          190 SFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFV  268 (342)
Q Consensus       190 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~  268 (342)
                      ....+.   ....  +.  .+....+..+.++.++..++....|+| +........+|+|+|+| +++|++..+..++.+
T Consensus       152 ~~~~~~---~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k-~iPrAi~~~~~~~~~  223 (410)
T PRK11021        152 VVAIWW---AGDI--KP--ADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER-DFPRALMIGLLLAGL  223 (410)
T ss_pred             HHHHHH---HcCC--ch--hcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc-cccHHHHHHHHHHHH
Confidence            111111   1111  10  111111111234557889999999999 99999999999999986 599999999999999


Q ss_pred             HHHHHhhH
Q 019330          269 TFYSAAVS  276 (342)
Q Consensus       269 ~y~~~g~~  276 (342)
                      +|++....
T Consensus       224 lYil~~~~  231 (410)
T PRK11021        224 VYWACTVV  231 (410)
T ss_pred             HHHHHHHH
Confidence            99987755

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.27  E-value=1.6e-09  Score=104.47  Aligned_cols=241  Identities=11%  Similarity=0.038  Sum_probs=141.9

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      +|+=+.++.+...+++++|+|++.+|...++.|-. .+...++.++........+.|...+.|+++    ...+-+++ +
T Consensus         4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G----G~y~y~~~-~   77 (435)
T PRK10435          4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG----GPIAYAGE-I   77 (435)
T ss_pred             CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----ChhHHHHH-H
Confidence            55667899999999999999999999999988764 455555566666666666777766554444    23333456 7


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHH-HHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      |+++| +.+.............++.+...+.+..+++... + .  ...+... ..+..+-+...+..+....++.+..+
T Consensus        78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~-~-~--~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~  152 (435)
T PRK10435         78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN-D-P--IPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLV  152 (435)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-C-h--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            88766 6666654443434444554555566655554221 1 1  1111111 11111222233344444444444333


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHH
Q 019330          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCY  263 (342)
Q Consensus       185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~  263 (342)
                      ..+...+..+.....+...++. ..++.  +..+....++..++....|+| +........+|+|+|+| +++|++..+.
T Consensus       153 ~~li~~~~~~i~g~~~~~~~~~-~~~~~--~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r-~iPrAi~~~~  228 (435)
T PRK10435        153 LVLIPVVGTAIVGWHWFDAATY-AANWN--TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR-TVPLATMLGT  228 (435)
T ss_pred             HHHHHHHHHHHHHHHHcCHHhh-ccccc--CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc-cccHHHHHHH
Confidence            2222221111111111111000 01111  111123568889999999999 99999999999999986 5999999999


Q ss_pred             HHHHHHHHHHhhHhhhcc
Q 019330          264 SVIFVTFYSAAVSGYWAF  281 (342)
Q Consensus       264 ~~~~~~y~~~g~~gy~~f  281 (342)
                      .++.++|++..+......
T Consensus       229 ~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        229 GLAGIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999998877654443

>TIGR00909 2A0306 amino acid transporter

Probab=99.25  E-value=4e-09  Score=101.46  Aligned_cols=240  Identities=10%  Similarity=0.082  Sum_probs=152.6

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      +|+-+.++.+...+++++|+|++.+|....+.+-..+.+..++.++........+.|...+.|+++    ...+-.++.+
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~~   77 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAG----SPYTYAYEAM   77 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----cceeeHHHHh
Confidence            466688999999999999999999997765443233455555666667667777788776654433    2334466789


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCc---------hHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSL---------KLYEFIAMVTVVMIVLSQLPTFHSLR  176 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~---------~~~~~~~i~~~i~~pl~~~~~l~~l~  176 (342)
                      ||+.| +++.....+.....+..+....++.+..+++....+...         .......+..++.+-....+..+...
T Consensus        78 G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~  156 (429)
T TIGR00909        78 GELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESG  156 (429)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence            99655 777777777777777778888888887776532111000         00001112222222233334566666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330          177 HINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM  255 (342)
Q Consensus       177 ~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~  255 (342)
                      +++.+.....+...++.+.....+...+     +...  ..+....++..++....++| +........+|+|+|+| +.
T Consensus       157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r-~i  228 (429)
T TIGR00909       157 KVNDILVVLKVAALLLFAALGAIHFASN-----NYTP--FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPER-DI  228 (429)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhCcHH-----hcCC--CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc-cc
Confidence            7766666544433333222222222111     1111  11123346788899999999 99999999999999975 58


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhh
Q 019330          256 VKGLLMCYSVIFVTFYSAAVSGY  278 (342)
Q Consensus       256 ~~~~~~~~~~~~~~y~~~g~~gy  278 (342)
                      +|++..+..++.++|.+......
T Consensus       229 p~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       229 PKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998876544

>PRK10655 potE putrescine transporter; Provisional

Probab=99.24  E-value=2.5e-09  Score=103.13  Aligned_cols=239  Identities=10%  Similarity=-0.011  Sum_probs=140.4

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      +|+=+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|.....|+++    ....-+++.+
T Consensus         5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~~~   79 (438)
T PRK10655          5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEYAF   79 (438)
T ss_pred             cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHHHc
Confidence            4566789999999999999999999998888876 4666667777777766777777655544444    3344567889


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHH-HHHHHHhcCCCCcchhHHHHHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVT-VVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      ||.+| +++.....+..............+.+..+++.    .......+..... +..+-....+..+....++.+...
T Consensus        80 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~----~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~  154 (438)
T PRK10655         80 GKSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGA----TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVW  154 (438)
T ss_pred             CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            99766 77777665555444444444444555554431    1111111211111 111111222334444444433333


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHH
Q 019330          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCY  263 (342)
Q Consensus       185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~  263 (342)
                      ..+...++++.........++. .....  +.....+..+..++....|+| +-.......+|+|+|+| +++|++..+.
T Consensus       155 ~~l~~l~~~~i~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~  230 (438)
T PRK10655        155 GVIIPVVGLSIIGWFWFSPSLY-VAAWN--PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPER-NVPIAVLGGT  230 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCcccc-cCCcC--ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc-cccHHHHHHH
Confidence            2222221111111111111110 01111  111111246777788999999 99999999999999987 5999999999


Q ss_pred             HHHHHHHHHHhhHhh
Q 019330          264 SVIFVTFYSAAVSGY  278 (342)
Q Consensus       264 ~~~~~~y~~~g~~gy  278 (342)
                      .++.++|++......
T Consensus       231 ~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        231 LGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998765443

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=99.20  E-value=2.8e-10  Score=94.53  Aligned_cols=212  Identities=16%  Similarity=0.157  Sum_probs=142.3

Q ss_pred             hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccc-----c-------c--c------
Q 019330           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-----C-------E--K------   89 (342)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~-----~-------~--~------   89 (342)
                      |..-+...+.|-++|+|.|++|.+|+.+||++++.++.+.++.++.+....+++...     |       +  +      
T Consensus        13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st   92 (319)
T KOG3832|consen   13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST   92 (319)
T ss_pred             hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence            445678889999999999999999999999999999999999999998888776210     0       0  0      


Q ss_pred             --------------cCc------------------ccccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhH
Q 019330           90 --------------AGR------------------RHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL  137 (342)
Q Consensus        90 --------------~~~------------------~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l  137 (342)
                                    ..+                  +..+.++++...|.| .|.-+..++++++.+|....|-..+-...
T Consensus        93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~  171 (319)
T KOG3832|consen   93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSA  171 (319)
T ss_pred             cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence                          000                  013577888888988 78888899999999999999988877766


Q ss_pred             HHHhhhhc-------------CC----C-C-c----hHHHHHHHHH-HHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHh
Q 019330          138 QIMYSDLY-------------PN----G-S-L----KLYEFIAMVT-VVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV  193 (342)
Q Consensus       138 ~~l~~~~~-------------~~----~-~-~----~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~  193 (342)
                      -++...-.             ++    + . +    -.+.+++++. ++.+|+.+. ++++-+++.++..+.-.......
T Consensus       172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g  250 (319)
T KOG3832|consen  172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILG  250 (319)
T ss_pred             hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccch
Confidence            66644311             11    1 0 1    1244555554 555677777 68888999888887554443333


Q ss_pred             hhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCC
Q 019330          194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAP  249 (342)
Q Consensus       194 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~  249 (342)
                      +...-....+      |....+++...+-++-.-++.-.|+| +|...|.....++.
T Consensus       251 ~~l~tmqaee------daa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~  301 (319)
T KOG3832|consen  251 ISLATMQAEE------DAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQT  301 (319)
T ss_pred             hhhhhhhhcc------cccccCCccccccccccccchhhHHHHhhccCCCCCCCCee
Confidence            3222111211      11111122222234445568889999 99999987776653

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.18  E-value=1.2e-08  Score=101.08  Aligned_cols=249  Identities=10%  Similarity=0.080  Sum_probs=153.1

Q ss_pred             eeccCChHHHHHHHHHhhhhhhhhchHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVF--RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (342)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f--~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~  101 (342)
                      ..+|+=+.++.+..-++.++|+|+..+|...  +.+|.. .++..++.++.+........|.....|++|. .+.|   .
T Consensus        25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg-~Y~y---~   99 (557)
T TIGR00906        25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS-AYLY---S   99 (557)
T ss_pred             chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ceee---H
Confidence            3577778999999999999999999999654  346754 4555566666777777777777666555543 2344   3


Q ss_pred             HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhh----cC------CCCch-HHHHHHHHHHHHHHHhcCC
Q 019330          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL----YP------NGSLK-LYEFIAMVTVVMIVLSQLP  170 (342)
Q Consensus       102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~----~~------~~~~~-~~~~~~i~~~i~~pl~~~~  170 (342)
                      ++.+|+.+| +++.....+.....+.......++.++.++...    ..      ..... ......+..++++-....+
T Consensus       100 ~~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~  178 (557)
T TIGR00906       100 YVTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF  178 (557)
T ss_pred             HHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence            456898555 888888777776666666666666666655321    00      00110 1111112222222233445


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCC-CCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcC
Q 019330          171 TFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPP-KDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLA  248 (342)
Q Consensus       171 ~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~  248 (342)
                      ..+..++++.+....-+...+++++.+..+...++... ......+..+..+.+++.+.....|+| +...+....+|.|
T Consensus       179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k  258 (557)
T TIGR00906       179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK  258 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence            66666666665554433333333333332221111100 000000111223457889999999999 9999999999999


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHhhHhhh
Q 019330          249 PPATGKMVKGLLMCYSVIFVTFYSAAVSGYW  279 (342)
Q Consensus       249 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~  279 (342)
                      +|+| +++|++..++.++.++|.++.+.-..
T Consensus       259 nP~r-~iP~aii~sl~i~~vlY~lv~~~l~~  288 (557)
T TIGR00906       259 NPQR-AIPIGIVTSLLVCFVAYFLMSAALTL  288 (557)
T ss_pred             Cccc-cccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9987 59999999999999999988765433

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=99.16  E-value=6.5e-09  Score=97.67  Aligned_cols=286  Identities=13%  Similarity=0.120  Sum_probs=164.4

Q ss_pred             ChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcc
Q 019330           29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (342)
Q Consensus        29 ~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (342)
                      =|.+|....+..+++|+|++.+|....+.+--.+.+..++.+........++.+..++.  + .+  +..+..++.+||.
T Consensus         3 is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~--p-~~--~~~~~~~~~~Gk~   77 (359)
T TIGR00912         3 ISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF--P-EK--NFSEILSKYLGKI   77 (359)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC--C-CC--CHHHHHHHHhhHH
Confidence            35689999999999999999999987654433444555666666677777777776652  2 22  7889999999996


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHH-HHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 019330          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIA-MVTVVMIVLSQLPTFHSLRHINLVSLLLSL  187 (342)
Q Consensus       109 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~  187 (342)
                      .| .+..+....+............++.++...-   ++.    ..+.+ +..++..-....+.++....++.+-....+
T Consensus        78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~t----p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i  149 (359)
T TIGR00912        78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYLL---PRT----PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL  149 (359)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            56 5555655566555555555555555543321   221    22222 222222223344567777777776665444


Q ss_pred             HH-HHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHH-HHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHH
Q 019330          188 GY-SFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSIS-IIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYS  264 (342)
Q Consensus       188 ~~-~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~  264 (342)
                      .. .+++......+.   + + +  .+.+..+.++.+...+.- ...++| +...+.-...++|+|+  |.+|+...+..
T Consensus       150 ~~~~~il~~~~~~~~---~-~-~--~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~~~~  220 (359)
T TIGR00912       150 ILFILVLILLAPKLG---N-I-K--NLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK--KIKKSIIKAII  220 (359)
T ss_pred             HHHHHHHHHHhcccc---c-H-H--HccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh--hhHHHHHHHHH
Confidence            33 122222222211   0 0 0  111111122335555443 778888 8888888888888765  47899999999


Q ss_pred             HHHHHHHHHhhHhhhccCCCCch----hhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHH
Q 019330          265 VIFVTFYSAAVSGYWAFGNESNS----NILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQF  337 (342)
Q Consensus       265 ~~~~~y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~  337 (342)
                      ++.++|...-+.....+|.+..+    +..+....-+.+ +--+..-.+....-.+..+...-+..+.....+.+.|
T Consensus       221 ~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~-~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~  296 (359)
T TIGR00912       221 IGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIG-DFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLF  296 (359)
T ss_pred             HHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888888888855322    111111110000 0001112223333345555566666666666666543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.15  E-value=1.1e-08  Score=99.17  Aligned_cols=241  Identities=12%  Similarity=0.113  Sum_probs=145.5

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+=+.++.....+++++|+|++.+| .+.++.|.. +.+..++.+++.......+.|.....|.++    +..+.+++
T Consensus        10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G----g~~~~~~~   84 (452)
T TIGR01773        10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDTG----SFSTYADD   84 (452)
T ss_pred             HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence            355557899999999999999999999 667777864 666777777777777777788765544333    56677889


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHH-HHHHHHhcCCCCcchhHHHHHH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVT-VVMIVLSQLPTFHSLRHINLVS  182 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~  182 (342)
                      .+|+.+| +++.....+.....+.+.....+..++.+++    +  ..  .|..... ++..-....+..+....+....
T Consensus        85 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~--~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~  155 (452)
T TIGR01773        85 AIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----D--IP--LWLFSLILTIVLTLTNLYSVKSYGEFEFWF  155 (452)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--Cc--HHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            9999665 7777777776666666666666666665543    2  11  2221111 1112222222344444443332


Q ss_pred             HHHHHHHHHH--hhh-hhhccCcCCCCCC--CCc-cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330          183 LLLSLGYSFL--VVG-ACINAGFSKNAPP--KDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM  255 (342)
Q Consensus       183 ~~~~~~~~~~--~i~-~~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~  255 (342)
                      ...-+...+.  ++. .......+.....  .+. +..+..+..+.++..++....|+| +........+|+|+|+| +.
T Consensus       156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r-~i  234 (452)
T TIGR01773       156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK-SI  234 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh-HH
Confidence            2221111111  111 0011111100000  000 000111123446889999999999 99999999999999987 58


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330          256 VKGLLMCYSVIFVTFYSAAVSGYWA  280 (342)
Q Consensus       256 ~~~~~~~~~~~~~~y~~~g~~gy~~  280 (342)
                      +|++..+.....++|+.........
T Consensus       235 PrAi~~~~~~~~~~y~l~~~~~~~~  259 (452)
T TIGR01773       235 TRATNSVIWRIIVFYLGSIFIVVAL  259 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeeE
Confidence            9999888888888888765544433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.13  E-value=1.8e-08  Score=97.49  Aligned_cols=241  Identities=11%  Similarity=0.012  Sum_probs=138.4

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      .+|+=+.++++...+++++|+|++.+|....+.|.. .+...++.++........+.|.....|+++. .+.|   +++.
T Consensus         6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG-~y~~---~~~~   80 (445)
T PRK10644          6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPGG-SYAY---ARRC   80 (445)
T ss_pred             cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhHH---HHHH
Confidence            356678899999999999999999999998887643 3444444455555555666777665554442 1233   7788


Q ss_pred             hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHh--cCCCCcchhHHHHHH
Q 019330          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSLRHINLVS  182 (342)
Q Consensus       105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~--~~~~l~~l~~~s~~~  182 (342)
                      +||.+| +++.....+.......+......+....+++..  +...  ... ++...+.+.+.  ..+..+....+..+.
T Consensus        81 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~-~~~~~~~~~~~~ln~~gvk~~~~i~~i~  154 (445)
T PRK10644         81 FGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL--KDPL--VLT-ITCVVVLWIFVLLNIVGPKMITRVQAVA  154 (445)
T ss_pred             cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCcH--HHH-HHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            999766 666665555444444444444444444444321  1111  111 11111222222  223344444444444


Q ss_pred             HHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHH
Q 019330          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLM  261 (342)
Q Consensus       183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~  261 (342)
                      ....+...++.+.........++. ..+.+.  .....+..+..++....|+| +-.......+|+|+|+| +.+|++..
T Consensus       155 ~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iPrai~~  230 (445)
T PRK10644        155 TVLALIPIVGIAVFGWFWFRGETY-MAAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIG  230 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHhCchhc-cCCccc--cccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc-chhHHHHH
Confidence            332222111111111111100000 011111  11112345667788999999 99999999999999987 59999999


Q ss_pred             HHHHHHHHHHHHhhHhhhc
Q 019330          262 CYSVIFVTFYSAAVSGYWA  280 (342)
Q Consensus       262 ~~~~~~~~y~~~g~~gy~~  280 (342)
                      +..++.++|.+..+.....
T Consensus       231 s~~i~~v~Y~l~~~~~~~~  249 (445)
T PRK10644        231 GVLIAAVCYVLSSTAIMGM  249 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            9999999999887764433

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.13  E-value=2.1e-08  Score=97.79  Aligned_cols=244  Identities=10%  Similarity=0.001  Sum_probs=144.6

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChh-HHHHHHHHHHHHHHHHHHHhhhccccccc-cCcccccHHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEK-AGRRHIRFRELAAD  103 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~-~g~~~l~~~~~~~~~s~~ll~~~~~~~~~-~~~~~~sy~~l~~~  103 (342)
                      +|+=+.++++...+++++|+|++.+|....+.|-. ..++..++.++........+.|...+.|+ +|    ...+-.++
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~~   81 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYARE   81 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHHh
Confidence            55678899999999999999999999998765533 23444556666666666677777665544 33    23345688


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHH-HHHHHHHHHhcCCCCcchhHHHHHH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIA-MVTVVMIVLSQLPTFHSLRHINLVS  182 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~  182 (342)
                      .+||.+| +++.+...+........+.....+.+..+++.+..+.  ....+.. +..++..-....+.++....++.+.
T Consensus        82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~--~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~  158 (473)
T TIGR00905        82 GFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGN--PVPSILGASVLLWVFTFLVLRGVRQAAFINTIT  158 (473)
T ss_pred             HcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            8999766 7777766555555555665555666666655221111  1111211 1111222223334556555555554


Q ss_pred             HHHHHHHHHHhhhhhhccCcCCCCCCCCccc--cCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHH
Q 019330          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSL--ESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGL  259 (342)
Q Consensus       183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~  259 (342)
                      ....+...+++++..+.....++. ..+...  .+.....+..+..++....|+| +........+|+|+ + |+.+|++
T Consensus       159 ~~~~l~~l~~~ii~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~-r~iPrai  235 (473)
T TIGR00905       159 TIAKLIPLFLFIIIGWFWFKLDLF-TADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K-SDVGKAT  235 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhCchhc-ccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c-ccchHHH
Confidence            443232222222111111100000 001000  0011123446778889999999 99999999999999 4 4699999


Q ss_pred             HHHHHHHHHHHHHHhhHhhh
Q 019330          260 LMCYSVIFVTFYSAAVSGYW  279 (342)
Q Consensus       260 ~~~~~~~~~~y~~~g~~gy~  279 (342)
                      ..+..++.++|++.......
T Consensus       236 ~~~~~i~~~~Yil~~~~~~~  255 (473)
T TIGR00905       236 VLGTLGALVIYILITLLSLG  255 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999987765433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10249 phenylalanine transporter; Provisional

Probab=99.09  E-value=8e-08  Score=93.26  Aligned_cols=241  Identities=12%  Similarity=0.065  Sum_probs=142.8

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~-~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+=+.++.....++.++|+|++..|.... ++|- ..++..++.+++......-+.|...+.|.+|    +....+++
T Consensus        19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G----g~~~y~~~   93 (458)
T PRK10249         19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG----SFAHFAYK   93 (458)
T ss_pred             hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence            4566688999999999999999999986554 4465 4666777777788877888888776655444    56667889


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~  183 (342)
                      .+|+.+| +++.....+.............+..++.+++    +  .....+.+....+.. ....+..+..+.+.....
T Consensus        94 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~~~l~~-~lN~~gv~~~~~i~~~~~  165 (458)
T PRK10249         94 YWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFP----D--VPTWIWAAAFFIIIN-AVNLVNVRLYGETEFWFA  165 (458)
T ss_pred             HhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----c--CcHHHHHHHHHHHHH-HHHHhcchhhhhHHHHHH
Confidence            9999766 7777766665554455555555555554432    1  111112222222222 222234444444332222


Q ss_pred             HH---HHHHH-HHhhhhhhccCcCCCCCCCCcccc--CcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchh
Q 019330          184 LL---SLGYS-FLVVGACINAGFSKNAPPKDYSLE--SSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMV  256 (342)
Q Consensus       184 ~~---~~~~~-~~~i~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~  256 (342)
                      ..   .+... ++.+.. ...+........+....  +..+..+.++..++....|+| +-.......+|+|+|+| +++
T Consensus       166 ~ikv~~i~~~i~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k-~iP  243 (458)
T PRK10249        166 LIKVLAIIGMIGFGLWL-LFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK-SIP  243 (458)
T ss_pred             HHHHHHHHHHHHHHHHH-HHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh-HHH
Confidence            11   11111 111111 01110000000000000  001123456788999999999 99999999999999987 589


Q ss_pred             hHHHHHHHHHHHHHHHHhhHhhhc
Q 019330          257 KGLLMCYSVIFVTFYSAAVSGYWA  280 (342)
Q Consensus       257 ~~~~~~~~~~~~~y~~~g~~gy~~  280 (342)
                      |++..+.....++|..........
T Consensus       244 rai~~~~~~~~~~y~~~~~~~~~~  267 (458)
T PRK10249        244 KAVNQVVYRILLFYIGSLVVLLAL  267 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhee
Confidence            999999999999998755444333

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.09  E-value=8.5e-08  Score=93.41  Aligned_cols=245  Identities=11%  Similarity=0.113  Sum_probs=138.8

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f-~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+=+.++.....++.++|+|++..|... +.+|-...++..++.+++.......+.|.....|++|    .+..-+++
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~~   87 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAAR   87 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence            466678899999999999999999888664 5667544455566666677777777777766655444    45566778


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~  183 (342)
                      .+|+.+| +++.....+.....+.......+..++.+.    ++.  ....+.++..++...+ ..+..+....++....
T Consensus        88 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----p~~--~~~~~~~~~~~~~~~i-n~~gvk~~~~~~~~~~  159 (471)
T PRK11387         88 YLGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWF----PQV--PVWPWCLLFCALIFGL-NVVSTRFFAEGEFWFS  159 (471)
T ss_pred             hcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcC--cHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence            8999766 677766666555544444444443333222    221  1111222222222222 2233443333332222


Q ss_pred             HHHHHHHHHhhhhh---hcc-C-cCCCCCC---CCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330          184 LLSLGYSFLVVGAC---INA-G-FSKNAPP---KDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK  254 (342)
Q Consensus       184 ~~~~~~~~~~i~~~---i~~-~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~  254 (342)
                      ..-+...+..++..   ... . ..++.+.   .+....+..+....+++.++....|+| +-......-+|+|+|+| +
T Consensus       160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~  238 (471)
T PRK11387        160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAK-V  238 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh-H
Confidence            11111111111111   000 0 0000000   011100110112346778888899999 99999999999999987 5


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330          255 MVKGLLMCYSVIFVTFYSAAVSGYWAFG  282 (342)
Q Consensus       255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg  282 (342)
                      ++|++..+..++.++|+...+......+
T Consensus       239 iPrAi~~~~~~~~~~y~~~~~~~~~~~p  266 (471)
T PRK11387        239 IPVAIRTTIARLVIFFVGTVLVLAALIP  266 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            9999999999999999887765444433

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.05  E-value=1.3e-07  Score=92.03  Aligned_cols=240  Identities=13%  Similarity=0.128  Sum_probs=136.6

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+-+.++.....++.+||+|++-.|. +.+++|. ..+...++.+++......-+.|....    +.+..++.+.+++
T Consensus        18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~----~~~~~~~~~ya~~   92 (469)
T PRK11049         18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS----NLEYKSFSDFASD   92 (469)
T ss_pred             hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCcHHHHHHH
Confidence            5677788999999999999999999875 6777777 34555556666665555556665432    1112256678999


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~  183 (342)
                      .+|+..| +++.....+.......+.....+..++.+++    +.  ....+.++...+..-+. .+..+....++.+..
T Consensus        93 ~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p----~~--~~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~~~  164 (469)
T PRK11049         93 LLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFP----DL--SDWVASLAVVLLLLSLN-LATVKMFGEMEFWFA  164 (469)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC--cHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence            9999655 8887777766544444455555555554433    21  11111122212222222 223444444443332


Q ss_pred             HHHHHHHHHhhhhhh---ccCc--CCCCC--CCCc-cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330          184 LLSLGYSFLVVGACI---NAGF--SKNAP--PKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK  254 (342)
Q Consensus       184 ~~~~~~~~~~i~~~i---~~~~--~~~~~--~~~~-~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~  254 (342)
                      ..-+...+.+++.+.   ..+.  .+..+  ..+. +..+..+..+.+++.++....|+| +........+|+|+|+| +
T Consensus       165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~  243 (469)
T PRK11049        165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK-S  243 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh-H
Confidence            221111111111111   1110  00000  0000 000011123446889999999999 99999999999999986 5


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhh
Q 019330          255 MVKGLLMCYSVIFVTFYSAAVSGY  278 (342)
Q Consensus       255 ~~~~~~~~~~~~~~~y~~~g~~gy  278 (342)
                      ++|++..+...+.++|.+......
T Consensus       244 iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        244 LPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHe
Confidence            899998777777888876665543

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.99  E-value=3.5e-07  Score=89.06  Aligned_cols=246  Identities=12%  Similarity=0.046  Sum_probs=137.3

Q ss_pred             CChHHHHHHHHHhhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhC
Q 019330           28 KGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG  106 (342)
Q Consensus        28 ~~s~~~a~~~l~~~~iG~GiL~lP~~f~-~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G  106 (342)
                      +=+.++.+...+++++|+|++.+|.... .+|....++..++.++........+.|.....|+.+.   ...+-+++.||
T Consensus         2 ~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG---G~y~y~~~~fG   78 (468)
T TIGR03810         2 KLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG---GVYSYAKAGFG   78 (468)
T ss_pred             CCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC---ChhhhHHhHcC
Confidence            4467889999999999999999998755 4453333444566666666666677777665443221   23333888899


Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHH-HHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330          107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLLL  185 (342)
Q Consensus       107 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~~~l~~l~~~s~~~~~~  185 (342)
                      +.+| +++.....+........+.....+.+..+++.+.+  ..+...+.+. ..+..+-....+..+....++.+..+.
T Consensus        79 ~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~  155 (468)
T TIGR03810        79 PFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG--GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA  155 (468)
T ss_pred             cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            9665 77776665555444555655555555555443211  1111111111 111122222234555555555444432


Q ss_pred             HHHHHHHhhhhhh--ccC--cCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330          186 SLGYSFLVVGACI--NAG--FSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL  260 (342)
Q Consensus       186 ~~~~~~~~i~~~i--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~  260 (342)
                      -+...++.++...  .+.  ...+.. .+.+........+..+..++....|+| +......+.+|.|+  +|+++|++.
T Consensus       156 ki~~l~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~--~k~ip~ai~  232 (468)
T TIGR03810       156 KLVPLFVFIVIGIFAFKGDTFTNDFW-GNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK--RSDVGKATV  232 (468)
T ss_pred             HHHHHHHHHHHHHHHhcHhhcCcccc-ccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC--cccchHHHH
Confidence            2222111111111  111  000000 000000001112335667888999999 99888888888886  346899999


Q ss_pred             HHHHHHHHHHHHHhhHhhhccC
Q 019330          261 MCYSVIFVTFYSAAVSGYWAFG  282 (342)
Q Consensus       261 ~~~~~~~~~y~~~g~~gy~~fg  282 (342)
                      .+...+.++|.+..+..+...+
T Consensus       233 ~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       233 IGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcC
Confidence            9999999999988876654443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10836 lysine transporter; Provisional

Probab=98.97  E-value=7.2e-07  Score=87.34  Aligned_cols=243  Identities=9%  Similarity=0.109  Sum_probs=133.6

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+=+.++.....++++||+|++..|. +.+++|-...++..++.+++....+.-+.|...+.|++|    ....-+++
T Consensus        13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g~y~y~~~   88 (489)
T PRK10836         13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----SFATYGQN   88 (489)
T ss_pred             ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHH
Confidence            4666788999999999999999999996 666777644677777788888888888888877665544    44555667


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH---H
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN---L  180 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s---~  180 (342)
                      .+|+.+| +++.....+........-.......++.++    ++.  ....+..+..++..-+. ....+....+.   .
T Consensus        89 ~~g~~~g-f~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~----~~~--~~~~~~~~~~~~~~~lN-~~gv~~~~~~~~~~~  160 (489)
T PRK10836         89 YVEEGFG-FALGWNYWYNWAVTIAVDLVAAQLVMSWWF----PDT--PGWIWSALFLGVIFLLN-YISVRGFGEAEYWFS  160 (489)
T ss_pred             HcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCC--chHHHHHHHHHHHHHHH-HHcchhhhhhHHHHH
Confidence            7888666 666655544322222211111222222221    221  11112122212222122 22233222222   1


Q ss_pred             HHHHHHHHH-HH--HhhhhhhccCcCCCCCCCCccccC-cchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330          181 VSLLLSLGY-SF--LVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM  255 (342)
Q Consensus       181 ~~~~~~~~~-~~--~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~  255 (342)
                      +..+..+.. .+  +.......+..+... ..++...+ .....+..++.+.....|+| +...+....+|.|+|+| ++
T Consensus       161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~i  238 (489)
T PRK10836        161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAG-WSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAK-NI  238 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCc-cccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHH-HH
Confidence            111111111 11  111111111110000 01111000 00112345566666677999 99999999999999986 59


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhhhcc
Q 019330          256 VKGLLMCYSVIFVTFYSAAVSGYWAF  281 (342)
Q Consensus       256 ~~~~~~~~~~~~~~y~~~g~~gy~~f  281 (342)
                      +|++..++..+.++|......-....
T Consensus       239 PrAi~~~~~~v~~~Yvl~~~~~~~~v  264 (489)
T PRK10836        239 PRAVRQVFWRILLFYVFAILIISLII  264 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheec
Confidence            99999999999999998765544443

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.96  E-value=6.4e-08  Score=92.98  Aligned_cols=240  Identities=10%  Similarity=0.077  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHhhhccccccccCcccccHHHHHHHHhCcc
Q 019330           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (342)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (342)
                      +++++....+++++|+|+...| .....|.. .++..++.+.+. ........|..++.|+++    ....-.++.+||+
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G----G~y~~~~~~~g~~   75 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG----GIYVWVSRAFGPF   75 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST----THHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC----eeeehhhhccccc
Confidence            5688999999999999999999 77677765 554444444444 455556666655433333    5556678889997


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHH-HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 019330          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEF-IAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL  187 (342)
Q Consensus       109 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~-~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~  187 (342)
                      +| ++......+........+.....+.+...+....+  ......+ +.+..++..-....+..+..++++.......+
T Consensus        76 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i  152 (426)
T PF13520_consen   76 WG-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN--PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI  152 (426)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT--CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ch-hcccceeEEEeeccccccccchhhhhhhccccccc--cccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence            66 77777777777777777777777776655432111  1111111 11122222222233346666666555554444


Q ss_pred             -HHHHHhhhhhhccCcCCCCC---CCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330          188 -GYSFLVVGACINAGFSKNAP---PKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC  262 (342)
Q Consensus       188 -~~~~~~i~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~  262 (342)
                       ...++.+...+.....+..+   +......+.   .+...+.+++...|+| +........+|+|+   |+.+|++..+
T Consensus       153 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~  226 (426)
T PF13520_consen  153 VIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS---GWPGFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPRAIIIS  226 (426)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHH----SHSCSSCS---SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHHHHHHH
T ss_pred             hhhhhhheeEEEeeecccccccccccccccCCc---cccchhhHHHHHHhhcccccccccccccccc---hhheeecccc
Confidence             23223333333322111100   000011111   1124678899999999 99999999999876   3589999999


Q ss_pred             HHHHHHHHHHHhhHhhhccCCC
Q 019330          263 YSVIFVTFYSAAVSGYWAFGNE  284 (342)
Q Consensus       263 ~~~~~~~y~~~g~~gy~~fg~~  284 (342)
                      ..++.++|.+....-....+++
T Consensus       227 ~~~~~i~y~l~~~~~~~~~~~~  248 (426)
T PF13520_consen  227 IIIVAIIYILFSIALLGALPDD  248 (426)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTHC
T ss_pred             hhHHHHHHhhhhheeeecccch
Confidence            9999999999877766665543

...

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.95  E-value=6.9e-07  Score=87.24  Aligned_cols=238  Identities=11%  Similarity=0.045  Sum_probs=142.0

Q ss_pred             cCChHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           27 SKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      |+=+.++.....+..++|+|++..|. +.+..|....++..++.+++.......+.|.....|+.+.   .|...+++.+
T Consensus         2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG---~~~~~~~~~~   78 (478)
T TIGR00913         2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG---SFATYASRFV   78 (478)
T ss_pred             CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHc
Confidence            34467888999999999999998774 4556664433555666667777777777887665442222   5777889999


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~  185 (342)
                      |+++| +++.....+.....+.......+..++.+.+      ......|..+..++ .-+...+..+....++.+....
T Consensus        79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~in~~gv~~~~~~~~~~~~~  150 (478)
T TIGR00913        79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD------KVNPAVWIAIFYVF-IVIINLFGVKGYGEAEFWFSSI  150 (478)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHH
Confidence            99777 7777777777666666666666666654322      12222232222222 2222333455544444333221


Q ss_pred             HH---HHHHHhhhhhhccCcCCCCC--CCCc----cccCc-chhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330          186 SL---GYSFLVVGACINAGFSKNAP--PKDY----SLESS-KSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK  254 (342)
Q Consensus       186 ~~---~~~~~~i~~~i~~~~~~~~~--~~~~----~~~~~-~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~  254 (342)
                      -+   ...++..+.......++...  ..+.    .+.+. ....+.++..++....|+| +-.......+|.|+|+| +
T Consensus       151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~  229 (478)
T TIGR00913       151 KILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRK-S  229 (478)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh-H
Confidence            11   11111111111111100000  0000    01110 0012457788899999999 99999999999999987 5


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhH
Q 019330          255 MVKGLLMCYSVIFVTFYSAAVS  276 (342)
Q Consensus       255 ~~~~~~~~~~~~~~~y~~~g~~  276 (342)
                      ++|++..+..++.++|.+..+.
T Consensus       230 iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       230 IPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987544

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.95  E-value=5.6e-07  Score=87.30  Aligned_cols=236  Identities=12%  Similarity=0.088  Sum_probs=137.4

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      .+|+=+.++.....++.+||+|++..|....+.|-...++..++.+++......-+.|.....|..+    ++.+-+++.
T Consensus        10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG----g~y~~~~~~   85 (456)
T PRK10238         10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAG----SFSHFAYKY   85 (456)
T ss_pred             hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHHH
Confidence            4666688999999999999999998886655443234555566666666666666777765544433    455557778


Q ss_pred             hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      +|+..| +++.....+.....+.+.....++.++...+    +  .....+.++...+..-+.. ...+....++.....
T Consensus        86 ~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p----~--~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~~  157 (456)
T PRK10238         86 WGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYP----E--IPTWVSAAVFFVVINAINL-TNVKVFGEMEFWFAI  157 (456)
T ss_pred             cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence            999544 8888888877777777777777777765543    2  1111122222222222222 233444444433322


Q ss_pred             HHHHHHHHhhhhh---hccCcCCC--CCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhH
Q 019330          185 LSLGYSFLVVGAC---INAGFSKN--APPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKG  258 (342)
Q Consensus       185 ~~~~~~~~~i~~~---i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~  258 (342)
                      .-+...+++++..   ........  ......+..+..+..+..+..+++...|+| +-.......+|+|+|+| .++|+
T Consensus       158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r-~iPrA  236 (456)
T PRK10238        158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ-SIPKA  236 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh-HHHHH
Confidence            2221111111100   01110000  000000000011122346777888899999 99999999999999987 58999


Q ss_pred             HHHHHHHHHHHHHHH
Q 019330          259 LLMCYSVIFVTFYSA  273 (342)
Q Consensus       259 ~~~~~~~~~~~y~~~  273 (342)
                      +..+.....+.|...
T Consensus       237 i~~~~~~i~~~y~~~  251 (456)
T PRK10238        237 TNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887777777777654

>PRK15049 L-asparagine permease; Provisional

Probab=98.95  E-value=6.3e-07  Score=87.87  Aligned_cols=244  Identities=10%  Similarity=0.081  Sum_probs=136.5

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+=+.++.....+..+||+|++..|. +.+.+|- .+++..++.+++....+..+.|.....|..+    +...-+++
T Consensus        26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG----g~y~y~~~  100 (499)
T PRK15049         26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG----SFVSYARE  100 (499)
T ss_pred             hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence            4555678999999999999999998887 6666675 4666777777777777777888776554443    45666788


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHH--HHHHHHHHHHhcCCCCcchhHHHHH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI--AMVTVVMIVLSQLPTFHSLRHINLV  181 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~  181 (342)
                      .+|+++| +++.....+........-....+...... +.+ +  ..  ..|.  +...++..-+ ..+..+....+...
T Consensus       101 ~~G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~-~--~~--~~~~~~~~~~~l~~~i-N~~gvk~~~~i~~~  172 (499)
T PRK15049        101 FLGEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAF-G--GV--PQWVFALAALTIVGTM-NMIGVKWFAEMEFW  172 (499)
T ss_pred             HhCcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-C--CC--cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            8999665 77777665544333333333333333211 110 1  11  2232  1121222222 22233444343333


Q ss_pred             HHHHHHHHHHHhhhh---hhccCcCCCCCCCCccc----cCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCcccc
Q 019330          182 SLLLSLGYSFLVVGA---CINAGFSKNAPPKDYSL----ESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATG  253 (342)
Q Consensus       182 ~~~~~~~~~~~~i~~---~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~  253 (342)
                      ..+.-+...+..++.   ....+...+........    .+..+..+...+.++....|+| +-..+....+|.|+|+| 
T Consensus       173 ~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r-  251 (499)
T PRK15049        173 FALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT-  251 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh-
Confidence            221111111111111   11111110000000000    0111123345666777899999 99999999999999987 


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330          254 KMVKGLLMCYSVIFVTFYSAAVSGYWAFG  282 (342)
Q Consensus       254 ~~~~~~~~~~~~~~~~y~~~g~~gy~~fg  282 (342)
                      +++|++..+.....++|+..........+
T Consensus       252 ~iPrAi~~~~~~i~~~yi~~~~~~~~~~p  280 (499)
T PRK15049        252 MVPKAINSVIWRIGLFYVGSVVLLVMLLP  280 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence            59999999998888888876665444433

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.94  E-value=5.3e-07  Score=87.52  Aligned_cols=239  Identities=12%  Similarity=0.104  Sum_probs=137.9

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+=+.++.....+.+++|+|++.+|.. .+.+|- .+.+..++.++........+.|...+.|.++    ...+-+++
T Consensus         7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G----g~y~y~~~   81 (457)
T PRK10580          7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS----SFSRYAQE   81 (457)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence            35666888999999999999999999876 445564 4566677777777777777888766544333    44456788


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~  183 (342)
                      .+||.+| +++.+...+.....+.......+..++.+++    +  .....+.+...++ .-....+..+....+..+..
T Consensus        82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~l-~~~ln~~gv~~~~~~~~~~~  153 (457)
T PRK10580         82 NLGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFP----T--VPHWIWVLSVVLI-ICAVNLMSVKVFGELEFWFS  153 (457)
T ss_pred             HcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C--CChHHHHHHHHHH-HHHHHHccchhHHHHHHHHH
Confidence            8999655 7777766655544444444444444444332    1  1112222222222 22233334454444443322


Q ss_pred             HHHHHHHHHhh-------hhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330          184 LLSLGYSFLVV-------GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM  255 (342)
Q Consensus       184 ~~~~~~~~~~i-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~  255 (342)
                      ...+...++.+       .....+..+........+..+..+..+.++..++....|+| +........+|+|+|+| +.
T Consensus       154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k-~i  232 (457)
T PRK10580        154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK-SI  232 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-HH
Confidence            22111111111       11111110000000000000011123446788899999999 99999999999999987 58


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHh
Q 019330          256 VKGLLMCYSVIFVTFYSAAVSG  277 (342)
Q Consensus       256 ~~~~~~~~~~~~~~y~~~g~~g  277 (342)
                      +|++..+.....++|.......
T Consensus       233 PrAi~~~~~~~~~~y~~~~~~~  254 (457)
T PRK10580        233 PRAINSVPMRILVFYVGTLFVI  254 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8998888877788887665443

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.94  E-value=9e-08  Score=99.67  Aligned_cols=244  Identities=16%  Similarity=0.118  Sum_probs=149.8

Q ss_pred             cCChHHHHHHHH-Hhhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccc-ccccCcccccHHHHHHH
Q 019330           27 SKGEWWHAGFHL-TTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-CEKAGRRHIRFRELAAD  103 (342)
Q Consensus        27 ~~~s~~~a~~~l-~~~~iG~GiL~-lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~-~~~~~~~~~sy~~l~~~  103 (342)
                      ++=+++++++.- +.+|+|+|+.- +++...++|...+.+..++.++++..+..-+.+.... .++.|.   .| ...++
T Consensus        76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y-~yisr  151 (953)
T TIGR00930        76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AY-YLISR  151 (953)
T ss_pred             cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HH-HHHHH
Confidence            344667777777 99999999865 5577779998878888888999999888888887654 333332   23 34566


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcC---CCCc-hHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP---NGSL-KLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~---~~~~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~s  179 (342)
                      .+|+.+| ..+.+...+.+...+..|.+..++.+..+++....   .... ..+.+.++..+++.-+++. ..+....+.
T Consensus       152 alGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~-Gvk~~ak~q  229 (953)
T TIGR00930       152 SLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFA-GMEWENKAQ  229 (953)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            7899776 77777888888888899999999999888753210   0011 1122222222222233332 334333443


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCcCCCC-CCCCc-------cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCc
Q 019330          180 LVSLLLSLGYSFLVVGACINAGFSKNA-PPKDY-------SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPP  250 (342)
Q Consensus       180 ~~~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p  250 (342)
                      .+.+++.+...+.+++..+........ ....+       +..+..+.....++..++++.++| |......+-+|+|+|
T Consensus       230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP  309 (953)
T TIGR00930       230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP  309 (953)
T ss_pred             HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            333332222222222222211100000 00000       000000001113677888888899 999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhhHh
Q 019330          251 ATGKMVKGLLMCYSVIFVTFYSAAVSG  277 (342)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~y~~~g~~g  277 (342)
                      ++ .+++++..+..+++++|+++.++.
T Consensus       310 ~r-~IPratl~ai~i~~vlYllv~~~~  335 (953)
T TIGR00930       310 QK-AIPKGTLLAILTTTVVYLGSVVLF  335 (953)
T ss_pred             hh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            87 599999999999999999987643

>TIGR00908 2A0305 ethanolamine permease

Probab=98.92  E-value=2.7e-07  Score=89.13  Aligned_cols=238  Identities=11%  Similarity=0.036  Sum_probs=139.1

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      .+|+=+.++.....+..++|......+...+..|+..-+...++.+++.......+.|.....|.++    ....-+++.
T Consensus         5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~~~~   80 (442)
T TIGR00908         5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFARRA   80 (442)
T ss_pred             hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence            4666677888888888889855566688888899864444555555555555566777766554443    344566888


Q ss_pred             hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      +|+.+| +++.....+........+....++.+..+++.    .  ......++...+.. +...+..+....++.+..+
T Consensus        81 ~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~----~--~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~~  152 (442)
T TIGR00908        81 FGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPV----G--PGWLAALVFYIVFI-GINILGVGEAAKLEFVVTA  152 (442)
T ss_pred             hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C--chhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHH
Confidence            999655 77777777776667777777778887776542    1  11111111111111 2222234444444333332


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCCCCc-cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330          185 LSLGYSFLVVGACINAGFSKNAPPKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC  262 (342)
Q Consensus       185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~  262 (342)
                      ..+...++.+.....+....+.-..+. +..+..+..+.+++.++....|+| +........+|+|+|+| +.+|++..+
T Consensus       153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iprai~~s  231 (442)
T TIGR00908       153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR-DIPRGLIGA  231 (442)
T ss_pred             HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccCHHHHHH
Confidence            222211111111111100000000000 000111123346788888899999 99999999999999987 589999999


Q ss_pred             HHHHHHHHHHHhh
Q 019330          263 YSVIFVTFYSAAV  275 (342)
Q Consensus       263 ~~~~~~~y~~~g~  275 (342)
                      ..++.++|+...+
T Consensus       232 ~~~~~~~~~~~~~  244 (442)
T TIGR00908       232 ILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10746 putative transport protein YifK; Provisional

Probab=98.92  E-value=1.1e-06  Score=85.49  Aligned_cols=243  Identities=12%  Similarity=0.116  Sum_probs=141.7

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+=+.++.....+..+||+|++..|.. .+.+|- ..++..++.+++.......+.|.....|.++    ++.+-+++
T Consensus         8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG----g~~~y~~~   82 (461)
T PRK10746          8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG----SFAVYAHR   82 (461)
T ss_pred             HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence            35666789999999999999999998855 455665 3555666667777777777788766544333    57777889


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH--
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV--  181 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~--  181 (342)
                      .+|+.+| +++.....+.....+.......+..++.+++    +  .....+..+..++..-+.+ +..+....+...  
T Consensus        83 ~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p----~--~~~~~~~~~~~~~~~~lN~-~gv~~~~~~e~~~~  154 (461)
T PRK10746         83 YMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFP----E--MAQWIPALIAVALVALANL-AAVRLYGEIEFWFA  154 (461)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----C--CchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence            9999777 7777777766666666666666666655443    1  1222222222222222222 223333332211  


Q ss_pred             --HHHHHHHHHHHhhhhh-hccCcCCCCC-CCCccc-cCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccch
Q 019330          182 --SLLLSLGYSFLVVGAC-INAGFSKNAP-PKDYSL-ESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKM  255 (342)
Q Consensus       182 --~~~~~~~~~~~~i~~~-i~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~  255 (342)
                        -+...+...++.+... ...+...+.. ..+... .+..+..+.++..++....|+| +...+....+|.|+|+| .+
T Consensus       155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k-~i  233 (461)
T PRK10746        155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQV-TL  233 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh-HH
Confidence              1111111111111100 0101000000 011100 0011123557889999999999 99999999999999986 58


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhhhcc
Q 019330          256 VKGLLMCYSVIFVTFYSAAVSGYWAF  281 (342)
Q Consensus       256 ~~~~~~~~~~~~~~y~~~g~~gy~~f  281 (342)
                      +|++..+.....++|....+......
T Consensus       234 P~Ai~~~~~~i~~~yv~~~~~~~~~~  259 (461)
T PRK10746        234 RSAVGKVLWRILIFYVGAIFVIVTIF  259 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeeee
Confidence            99998888888888887654443333

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.90  E-value=4.1e-07  Score=89.36  Aligned_cols=249  Identities=10%  Similarity=0.084  Sum_probs=135.6

Q ss_pred             eeccCChHHHHHHHHHhhhhhhhhchHHHH-HHhhChhH-HHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGL-GFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (342)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~-f~~~G~~~-g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~  101 (342)
                      ..+|+=+.++.....+++++|+|++..|.. .+++|-.. ..+..++.+++.......+.|.....|++|.    ...-.
T Consensus        39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG----~y~~~  114 (501)
T TIGR00911        39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG----EYNYI  114 (501)
T ss_pred             ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----hhhhH
Confidence            356667889999999999999999999875 45566432 2233345556666666777777665554442    33335


Q ss_pred             HHHhCcchHHHHHHHHHHH-HHHhhHHHHHHhhhhhH-HHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330          102 ADVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECL-QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (342)
Q Consensus       102 ~~~~G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l-~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s  179 (342)
                      ++.+|+.+| ++....... ...+.+..+....++.+ +.+++.... ..+... .+.+..++..-....+..+...+++
T Consensus       115 ~~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~-~~~~~~-~i~~~~i~~~~~ln~~Gvk~~~~~~  191 (501)
T TIGR00911       115 LEVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEV-PEWAIR-LVAVLCVLLLTLVNCLSVKWATRVQ  191 (501)
T ss_pred             HhHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-chHHHH-HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            567899666 555443322 22233334444444443 222221100 011111 1111112222222233455555555


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCcCCCCCCCCcc-ccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhh
Q 019330          180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVK  257 (342)
Q Consensus       180 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~  257 (342)
                      .+.....+...++.++.++......+....+.+ ..+.......++..++....|+| +-.......+|+|+|+| +.+|
T Consensus       192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r-~iPr  270 (501)
T TIGR00911       192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR-TLPI  270 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh-hhHH
Confidence            444433332222222222111100010000100 11111123457788899999999 99999999999999986 5999


Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhc
Q 019330          258 GLLMCYSVIFVTFYSAAVSGYWA  280 (342)
Q Consensus       258 ~~~~~~~~~~~~y~~~g~~gy~~  280 (342)
                      ++..+..++.++|++..+.....
T Consensus       271 Ai~~s~~~v~~~Y~l~~~a~~~~  293 (501)
T TIGR00911       271 AIIISMPIVTFIYVLTNIAYFTV  293 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999986554433

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.90  E-value=4.2e-07  Score=87.90  Aligned_cols=241  Identities=13%  Similarity=0.116  Sum_probs=135.8

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f-~~~G~~-~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~  102 (342)
                      .+|+-+.++.....++.++|+|++..|... +..|-. ..++..++.+++.........|.....|+++. ...|   .+
T Consensus         6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y---~~   81 (445)
T PRK11357          6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVY---LK   81 (445)
T ss_pred             ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceee---HH
Confidence            467778899999999999999999999864 445643 24444555666666666667777665555543 2355   44


Q ss_pred             HHhCcchHHHHHHHHHH-HHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 019330          103 DVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (342)
Q Consensus       103 ~~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~  181 (342)
                      +.+|+.+| +++..... .........+....++.+....+    .... ......+..++.+-....+..+....++.+
T Consensus        82 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~----~~~~-~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~  155 (445)
T PRK11357         82 NAGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTP----IDPL-LGKFIAAGLIIAFMLLHLRSVEGGAAFQTL  155 (445)
T ss_pred             HhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            67888665 55655433 22223334445555555543322    1111 111111111222222233445544454444


Q ss_pred             HHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330          182 SLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL  260 (342)
Q Consensus       182 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~  260 (342)
                      .....+...++++...+.....++.. ............+..+..++....|+| +-.......+|+|+|+| +++|++.
T Consensus       156 ~~~~~~~~l~~~ii~g~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iP~Ai~  233 (445)
T PRK11357        156 ITIAKIIPFTIVIGLGIFWFKAENFA-APTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK-TMPRALI  233 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcccc-CCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc-cchHHHH
Confidence            44332222211221111101011100 000000011112446778889999999 99999999999999986 5899999


Q ss_pred             HHHHHHHHHHHHHhhHh
Q 019330          261 MCYSVIFVTFYSAAVSG  277 (342)
Q Consensus       261 ~~~~~~~~~y~~~g~~g  277 (342)
                      .+..++.++|.+.....
T Consensus       234 ~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        234 GSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998876543

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.88  E-value=1.7e-06  Score=83.78  Aligned_cols=225  Identities=12%  Similarity=0.093  Sum_probs=130.6

Q ss_pred             HhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHHHHH
Q 019330           39 TTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI  117 (342)
Q Consensus        39 ~~~~iG~GiL~lP~-~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~  117 (342)
                      ++++||+|++-.|. +.+++|. .+++..++.+++.......+.|.....|++|    ...+-+++.+|+.+| +++...
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G----g~y~y~~~~~G~~~g-f~~gw~   77 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG----SFSTYADKAIGRWAG-YTIGWL   77 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHcChHHH-HHHHHH
Confidence            56899999999997 6778886 4777777778888888888888766544433    566667789999766 777766


Q ss_pred             HHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 019330          118 QTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC  197 (342)
Q Consensus       118 ~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~  197 (342)
                      ..+.....+.......+..++...+      ......+.++..++.. +...+..+....+..+....-+...+..++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~  150 (446)
T PRK10197         78 YWWFWVLVIPLEANIAAMILHSWVP------GIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIAILAFIFLG  150 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc------cCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            6655555444444444444433321      1111112122211222 22222344444443333322121111111111


Q ss_pred             h--ccCcCCCCCCCCc-ccc---CcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHH
Q 019330          198 I--NAGFSKNAPPKDY-SLE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTF  270 (342)
Q Consensus       198 i--~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y  270 (342)
                      +  ..+.....+.... +.+   +..+..+.++..++....|+| +-..+....+|+|+|+| +++|++..+.....++|
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r-~iPrai~~~~~~i~i~Y  229 (446)
T PRK10197        151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK-HIVRATNSVIWRISIFY  229 (446)
T ss_pred             HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHH
Confidence            1  1111000000000 000   011223457889999999999 99999999999999986 58999999999899999


Q ss_pred             HHHhhHh
Q 019330          271 YSAAVSG  277 (342)
Q Consensus       271 ~~~g~~g  277 (342)
                      +...+..
T Consensus       230 il~~~~~  236 (446)
T PRK10197        230 LCSIFVV  236 (446)
T ss_pred             HHHHHHH
Confidence            8766553

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.87  E-value=7.2e-07  Score=82.48  Aligned_cols=229  Identities=14%  Similarity=0.116  Sum_probs=145.6

Q ss_pred             hHHHHHHHHHhhhhhhhhchHHHHHHhh---ChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhC
Q 019330           30 EWWHAGFHLTTAIVGPTILTLPYVFRGL---GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG  106 (342)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~---G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G  106 (342)
                      |..|....+..+++|+|++.+|....+.   ||+. .++-.+.+.+..   ++..+..++   .  ++.+..|..++.+|
T Consensus         3 S~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~-~ll~~~~~l~~~---~l~~~l~~~---~--p~~~l~~~~~~~~G   73 (320)
T PF03845_consen    3 SPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS-VLLGGLIGLLLA---LLIYYLLKR---F--PGKTLVEISEKLFG   73 (320)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHH---HHHHHHHHH---C--CCCCHHHHHHHHhC
Confidence            5689999999999999999999987665   5763 333333333333   333444333   1  12389999999999


Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHH-HHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330          107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLLL  185 (342)
Q Consensus       107 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~~~l~~l~~~s~~~~~~  185 (342)
                      |..| .++.+...+..+......+...++.++...-   |    +...|.+. ..++..--...+.++.+.+.+.+-...
T Consensus        74 k~lg-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l---p----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~  145 (320)
T PF03845_consen   74 KWLG-KIINLLYILYFLLISALVLREFSEFIKTYLL---P----ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPI  145 (320)
T ss_pred             cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9666 5566666666676666667667776666432   1    22333322 223333344556788888866666654


Q ss_pred             HHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHH
Q 019330          186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYS  264 (342)
Q Consensus       186 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~  264 (342)
                      .+...+.+......+...     .  .+.+..+.++.+.+.+.-...+.| +...+.-+...+|+|++  .+|....+..
T Consensus       146 ~~i~~~~i~~~~~~~~~~-----~--~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~--~~k~~~~~~~  216 (320)
T PF03845_consen  146 FLILLLLILLLSIPNIDW-----D--NLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK--LKKSLLIAIL  216 (320)
T ss_pred             HHHHHHHHHHHhcccCCH-----H--HeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH--HHHHHHHHHH
Confidence            444443343333332211     0  111112234457888877777778 77777778888887754  6789999999


Q ss_pred             HHHHHHHHHhhHhhhccCCC
Q 019330          265 VIFVTFYSAAVSGYWAFGNE  284 (342)
Q Consensus       265 ~~~~~y~~~g~~gy~~fg~~  284 (342)
                      .+.++|...-+.....||.+
T Consensus       217 ~~~~~~~~~~~~~i~vfG~~  236 (320)
T PF03845_consen  217 ISGLFLLFIIFITIGVFGPE  236 (320)
T ss_pred             HHHHHHHHHHHHHHHhcCHH
Confidence            99999988888888888865

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=98.83  E-value=1.3e-07  Score=89.63  Aligned_cols=245  Identities=12%  Similarity=0.148  Sum_probs=149.7

Q ss_pred             eeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhC-hh-HHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG-WG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (342)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G-~~-~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~  101 (342)
                      ..+|+=+.+.++..++++++|+|+..-|....+.+ -+ .+.++-++.++++.......+|.-...+.+|.   +|.=+.
T Consensus         9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ayi~   85 (479)
T KOG1287|consen    9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAYIS   85 (479)
T ss_pred             cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhhHH
Confidence            34677788999999999999999999998766544 44 46666777888999888888887665554554   344443


Q ss_pred             HHHhCcchHHHHHHHHHHHHHH-hhHHHHHHhhhhh-HHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330          102 ADVLGSGWMFYFVIFIQTAINT-GVGIGAILLAGEC-LQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (342)
Q Consensus       102 ~~~~G~~~g~~~v~~~~~~~~~-g~~~~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s  179 (342)
                       ++||+-++ ......-.+... ..+..+-+..+++ +++.++ .+   ......--++.++++..+.++ |....++.+
T Consensus        86 -~afg~~~a-F~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c---~~p~~~~~lla~~~l~~lt~~-n~~~V~~a~  158 (479)
T KOG1287|consen   86 -EAFGPFPA-FLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC---DVPRVASKLLAAALLVLLTLI-NSFSVKWAT  158 (479)
T ss_pred             -HHhccchh-HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC---CCchHHHHHHHHHHHHHHHHH-hhhhhhHHH
Confidence             45788555 322222222222 2225555555555 555554 12   111111113333344444444 566666666


Q ss_pred             HHHHHHHH---HHHHHhhhhhhccCcCCCCCCCCcc-ccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330          180 LVSLLLSL---GYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK  254 (342)
Q Consensus       180 ~~~~~~~~---~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~  254 (342)
                      .+-.+++.   ..+.++++.+++........+.+-+ ..+ ++.+..++..++-.-.|+| +-.++=.+.+|+|+|+| +
T Consensus       159 ~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g-~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k-t  236 (479)
T KOG1287|consen  159 RVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEG-SDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR-T  236 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchheeEeccccccccccccc-CcCchHHHHHHHHHhhhcccCchhhccchHhhcCccc-c
Confidence            66555433   2333333333332211111111111 222 2234456788888999999 99999999999999987 6


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhhhc
Q 019330          255 MVKGLLMCYSVIFVTFYSAAVSGYWA  280 (342)
Q Consensus       255 ~~~~~~~~~~~~~~~y~~~g~~gy~~  280 (342)
                      +++++.+++.+++++|+++=+..+.+
T Consensus       237 LP~Ai~isi~lvt~iYil~NvAy~~v  262 (479)
T KOG1287|consen  237 LPRAILISIPLVTVIYVLVNVAYFTV  262 (479)
T ss_pred             chHHHHHhhHHHHHHHHHhHhheeEe
Confidence            99999999999999999887654443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.72  E-value=8.1e-06  Score=79.19  Aligned_cols=248  Identities=12%  Similarity=0.123  Sum_probs=148.7

Q ss_pred             ccCChHHH-HHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           26 ESKGEWWH-AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        26 ~~~~s~~~-a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      +++-+.++ ........++|.|++.+|......+ ....+..++.+++.......+.|...+.|+.|    .+.+-.++.
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----G~y~~~~~~   85 (466)
T COG0531          11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG----GAYAYAKRA   85 (466)
T ss_pred             CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----Ceeeehhhh
Confidence            34444455 8888999999999999999988776 22222234444444444555566555433344    355557888


Q ss_pred             hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHH--HHHHHHhcCCCCcchhHHHHHH
Q 019330          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVT--VVMIVLSQLPTFHSLRHINLVS  182 (342)
Q Consensus       105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~~~l~~l~~~s~~~  182 (342)
                      +|+++| +++.....+................+..+++... ........+..+..  ...+-+.-.+..+....+..+.
T Consensus        86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~  163 (466)
T COG0531          86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII  163 (466)
T ss_pred             cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            998766 7888888888888888888888887776665310 00000011222222  2222222333455555554444


Q ss_pred             HHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHH
Q 019330          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLM  261 (342)
Q Consensus       183 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~  261 (342)
                      .+..+...++..+........+..  ...............+..++....++| |-.......+|+|+|++ +++|++..
T Consensus       164 ~~~~i~~~i~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r-~ip~aii~  240 (466)
T COG0531         164 TILKIIILLIFIILGLFAFGFSNG--NLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR-TIPRAIIL  240 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccc--ccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc-cccHHHHH
Confidence            443333333222222222211110  011100001112336888899999999 99999999999999876 48999999


Q ss_pred             HHHHHHHHHHHHhhHhhhccCC
Q 019330          262 CYSVIFVTFYSAAVSGYWAFGN  283 (342)
Q Consensus       262 ~~~~~~~~y~~~g~~gy~~fg~  283 (342)
                      ++.++.++|...........++
T Consensus       241 ~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         241 SLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhCccH
Confidence            9999999999998877777665

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.63  E-value=2.4e-05  Score=76.33  Aligned_cols=249  Identities=13%  Similarity=0.036  Sum_probs=133.3

Q ss_pred             eccCChHHHHHHHHHhhh-hhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAI-VGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~-iG~GiL~lP~~f~-~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~  102 (342)
                      .+|+=+.++.+..-++.+ +|+|+.+.|..-. ..|- ..+...++.++........+.|.....|.+|    ....-++
T Consensus        11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG----G~Y~~~~   85 (475)
T TIGR03428        11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG----AIYQWSR   85 (475)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----CHHHHHH
Confidence            566677788877777764 8899888886654 4444 4555556666666666777777766655444    2334466


Q ss_pred             HHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhh---hcCCCCc----h-HHHHHHH-HHHHHHHHhcCCCCc
Q 019330          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD---LYPNGSL----K-LYEFIAM-VTVVMIVLSQLPTFH  173 (342)
Q Consensus       103 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~---~~~~~~~----~-~~~~~~i-~~~i~~pl~~~~~l~  173 (342)
                      +.+|+.+| +++.....+................+..++..   ...+..+    . ...+.+. ..++..-+...+..+
T Consensus        86 ~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k  164 (475)
T TIGR03428        86 RMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE  164 (475)
T ss_pred             HHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            77899766 77776666555444444344444444433221   1101111    0 1112111 111222222233455


Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCc--cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCc
Q 019330          174 SLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDY--SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPP  250 (342)
Q Consensus       174 ~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p  250 (342)
                      ....+..+..+..+...+++++.......  +++....  ...+..+.....+..+.....|+| +-.....+-+|+|+|
T Consensus       165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP  242 (475)
T TIGR03428       165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQ--RGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP  242 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence            55555554443322222222222121111  1100000  000111111234556666778999 999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330          251 ATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFG  282 (342)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg  282 (342)
                      +| ..+|++..+..+..++|.+.-+......+
T Consensus       243 ~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       243 RR-VAPRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             ch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            87 58999999999887766655554444433

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.37  E-value=0.00015  Score=68.37  Aligned_cols=245  Identities=14%  Similarity=0.174  Sum_probs=150.9

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL-~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      +|.=+.++--+.-+...||+|.. .--.+.+.+|-- -++.-++.+++.+.-++.|.|-..+.|  ...  |+.+.+++.
T Consensus        12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p--~~g--SF~~~a~~~   86 (462)
T COG1113          12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANP--VSG--SFSDYARKY   86 (462)
T ss_pred             hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC--CCC--cHHHHHHHH
Confidence            45557788889999999999953 344556666643 344455677777777888888766532  233  999999999


Q ss_pred             hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHH--HHHHHHH--HHHhcCCCCcchhHH-H
Q 019330          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI--AMVTVVM--IVLSQLPTFHSLRHI-N  179 (342)
Q Consensus       105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~--~i~~~i~--~pl~~~~~l~~l~~~-s  179 (342)
                      +|+..| ++......+.-..++++-+..++..++..++.      .  ..|+  +...+++  .=+.-.|.+.++.+. +
T Consensus        87 lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~------v--P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA  157 (462)
T COG1113          87 LGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD------V--PQWVFALAAVVLLLAVNLISVKVFGELEFWFA  157 (462)
T ss_pred             hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999544 89999999999999999999999999998873      1  3343  2222222  223344555555443 3


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCcCCCCCCCCcc-cc---CcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330          180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK  254 (342)
Q Consensus       180 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~  254 (342)
                      .+=++.++...++.++ -+..+.+.+......+ ++   +.-+..+.+++.++-+.+||| +.-.+---..|-|+|++. 
T Consensus       158 lIKV~aIi~~Iv~G~~-ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~-  235 (462)
T COG1113         158 LIKVAAIIAFIVVGIV-LLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKA-  235 (462)
T ss_pred             HHHHHHHHHHHHHHHH-HHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhH-
Confidence            3322222222211111 1111221111001111 11   112345678999999999999 999888889999999873 


Q ss_pred             hhhHHHHH-----HHHHHHHHHHHhhHhhhccCCCCc
Q 019330          255 MVKGLLMC-----YSVIFVTFYSAAVSGYWAFGNESN  286 (342)
Q Consensus       255 ~~~~~~~~-----~~~~~~~y~~~g~~gy~~fg~~~~  286 (342)
                      ++|++..-     .+=+..+.+++.+.-+-.++++.+
T Consensus       236 ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S  272 (462)
T COG1113         236 IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS  272 (462)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC
Confidence            66665433     333344445566666655555443

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.25  E-value=0.00031  Score=68.73  Aligned_cols=251  Identities=12%  Similarity=0.035  Sum_probs=125.3

Q ss_pred             eccCChHHHHHHHHHhhhhh--hhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVG--PTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG--~GiL-~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~  101 (342)
                      .+|+=+.++.+..-+. ++|  +|+. +++.+.++.|-...+...++.+++.......+.|.....|++|    +...-+
T Consensus        10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G----g~y~~~   84 (482)
T TIGR00907        10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG----GQYFWS   84 (482)
T ss_pred             eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc----cHHHHH
Confidence            4555566666555555 444  4543 3445666777755566666777777777777788766655444    334445


Q ss_pred             HHHhCcchHH---HHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCC--CchHHHHHHHHH--HHHHHHhcCCCCcc
Q 019330          102 ADVLGSGWMF---YFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG--SLKLYEFIAMVT--VVMIVLSQLPTFHS  174 (342)
Q Consensus       102 ~~~~G~~~g~---~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~--~~~~~~~~~i~~--~i~~pl~~~~~l~~  174 (342)
                      ++.+|+++|+   +++.....+.....+.+.....++.+..+.....+++  ........++..  +..+-+...+..|.
T Consensus        85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~  164 (482)
T TIGR00907        85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKW  164 (482)
T ss_pred             HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence            6667654432   5556666666666666666666666665543222221  011111111111  11122222223344


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccc---cCcc---hhhHhhHHHHHHHHHHHH-hhccHHHHhhhc
Q 019330          175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSL---ESSK---SARIFSAFTSISIIAAIF-GNGILPEIQATL  247 (342)
Q Consensus       175 l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m  247 (342)
                      +..+..+..+..+...+++++........+.. ..+...   .+..   ...-+....++....|+| +-.......+|+
T Consensus       165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~  243 (482)
T TIGR00907       165 LPRITSSAAYWSLLGFLTICITLLACKSPKFN-DGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI  243 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-ChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence            44444333322222111111111111100000 001000   0000   001124556666678999 999999999999


Q ss_pred             CCccccchhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330          248 APPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFG  282 (342)
Q Consensus       248 ~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg  282 (342)
                      |+|+| +++|++..+..+..+++++..+.-+...+
T Consensus       244 knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       244 ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99986 58999999888776655444433333333

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.24  E-value=0.00049  Score=67.62  Aligned_cols=239  Identities=9%  Similarity=0.099  Sum_probs=121.1

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHhhhccccccc-cCcccccHHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEK-AGRRHIRFRELAAD  103 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~~~~~-~~~~~~sy~~l~~~  103 (342)
                      +++=+.++.....+++++|.+  .+|.++++.|.. +++..++.+++. .-....+.|.....|. +|    .-..-.++
T Consensus         6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~~   78 (496)
T PRK15238          6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMNK   78 (496)
T ss_pred             cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHHH
Confidence            455688888888899999976  679888888875 555555555443 3344456776554442 23    23344677


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhH---H-------HHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHH--HHHHHhcCCC
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVG---I-------GAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTV--VMIVLSQLPT  171 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~---~-------~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~--i~~pl~~~~~  171 (342)
                      .+|+++|. ++............   .       .+.+. +....+.++.  .+.... ....++..+  ..+-....|.
T Consensus        79 ~~G~~~gf-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~-~~~~~~a~~~~~~~t~vn~~g  153 (496)
T PRK15238         79 SVGPKFAF-IGTFMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHF--LGLNST-QVVGILAVIWMILVTFVASKG  153 (496)
T ss_pred             HcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhhhhh--hcccch-HHHHHHHHHHHHHHHHHHccc
Confidence            78998874 33222211111111   0       11111 1111110000  000111 111111111  2233334556


Q ss_pred             CcchhHHHHHHHHHHHHH----HHHhhhhhhccC-cCCCCCC-CCccccCcch-hhHhhHHHHHHHHHHHH-hhccHHHH
Q 019330          172 FHSLRHINLVSLLLSLGY----SFLVVGACINAG-FSKNAPP-KDYSLESSKS-ARIFSAFTSISIIAAIF-GNGILPEI  243 (342)
Q Consensus       172 l~~l~~~s~~~~~~~~~~----~~~~i~~~i~~~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~i~~fsf-~~~~~~~i  243 (342)
                      ++..+.++.++....+..    .++........+ ..+++.. .+......+. .+......++....|+| +.......
T Consensus       154 ~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~  233 (496)
T PRK15238        154 INKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGL  233 (496)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence            666666665433322211    111111111111 1000000 0100000010 01135677788889999 99999999


Q ss_pred             hhhcCCccccchhhHHHHHHHHHHHHHHHHhhHh
Q 019330          244 QATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSG  277 (342)
Q Consensus       244 ~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g  277 (342)
                      .+|+|+|+| +++|++..+...+.++|.+..++.
T Consensus       234 a~E~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~  266 (496)
T PRK15238        234 VDKTENPEK-NFPKGIIIAAIVISIGYSLAIFLW  266 (496)
T ss_pred             HHhccCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987 589999999999999998765444

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.22  E-value=1.3e-05  Score=78.26  Aligned_cols=239  Identities=13%  Similarity=0.118  Sum_probs=136.4

Q ss_pred             Hhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHHHHHHH
Q 019330           39 TTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI  117 (342)
Q Consensus        39 ~~~~iG~GiL-~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~  117 (342)
                      +..++|+|++ ..+.+..+.|.....+..++.++....+..-+.|..++.++.+    ++.+.+++.+|+++| ..+.+.
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G----g~y~y~~~~lg~~~G-f~~gw~   81 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG----GFYAYASRGLGPALG-FAAGWA   81 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc----chhhhhhhccCCcCC-ceeeHH
Confidence            4567777754 4566888888876777778888888888888888777654333    566777888999776 555555


Q ss_pred             HHHHHHhhHHHHHHhhhhhHHHH--hhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhh
Q 019330          118 QTAINTGVGIGAILLAGECLQIM--YSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVG  195 (342)
Q Consensus       118 ~~~~~~g~~~~y~i~~~~~l~~l--~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~  195 (342)
                      ..+.............+..++..  .......+.+.. .+..++.+++.-+.+. ..+....+...-...-+...+..++
T Consensus        82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~li~~ii  159 (478)
T PF00324_consen   82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGI-LIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIALIAFII  159 (478)
T ss_pred             HHHHHHHHHHhhhhhhhhhhccccccccccccccccc-hhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhHhhhhhh
Confidence            55555555555555555555444  221110111100 1122333333333333 2333333222211111111111111


Q ss_pred             hh-hccCcCCCCCCC-----Ccc----ccC----cchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHH
Q 019330          196 AC-INAGFSKNAPPK-----DYS----LES----SKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLL  260 (342)
Q Consensus       196 ~~-i~~~~~~~~~~~-----~~~----~~~----~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~  260 (342)
                      .. +......++...     +..    +++    .+..++.+++.++....++| +.......-+|.|+|+| +++|++.
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k-~IPra~~  238 (478)
T PF00324_consen  160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK-TIPRATL  238 (478)
T ss_pred             hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh-hhhhHhh
Confidence            11 110100010000     111    111    11233668999999999999 99999999999999987 5999999


Q ss_pred             HHHHHHHHHHHHHhhHhhhccCCCC
Q 019330          261 MCYSVIFVTFYSAAVSGYWAFGNES  285 (342)
Q Consensus       261 ~~~~~~~~~y~~~g~~gy~~fg~~~  285 (342)
                      .+.....++|.......-...+.+.
T Consensus       239 ~~~~~~~v~y~~~~~~~~~~~~~~~  263 (478)
T PF00324_consen  239 LSVLRIGVFYVLTSYALTLAVPYDN  263 (478)
T ss_pred             hhhhhhhhhhhhhhhhcccccCccc
Confidence            9999999999988876666665443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=98.20  E-value=0.0014  Score=63.46  Aligned_cols=185  Identities=11%  Similarity=0.142  Sum_probs=109.7

Q ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCC-----ch--HHHHHHHHHHHHHHHh
Q 019330           95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGS-----LK--LYEFIAMVTVVMIVLS  167 (342)
Q Consensus        95 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~-----~~--~~~~~~i~~~i~~pl~  167 (342)
                      .++..+.|..||. .|..+..++..+...|=...-....++.++.+++...++..     .+  .....+++..+.+++.
T Consensus        76 l~~~v~sR~~FG~-~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~  154 (442)
T TIGR00800        76 LPFPVLSRASFGI-YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL  154 (442)
T ss_pred             CCcchhhhhhhhh-hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence            4788999999999 58899999999999999999999999999888776443210     11  1222344456666655


Q ss_pred             cCCCCcchhHHHHHHHHHHHHHHHHhhhhhhc-cCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHh
Q 019330          168 QLPTFHSLRHINLVSLLLSLGYSFLVVGACIN-AGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQ  244 (342)
Q Consensus       168 ~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~  244 (342)
                      ...-.+-.+.....+.........+.+..... .+..+..   +......+....+.+..+++..+-.+  .-.+.++..
T Consensus       155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dys  231 (442)
T TIGR00800       155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLG---ELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFT  231 (442)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc---cCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhh
Confidence            55444444445555554322222222111111 1111000   00000011223456777777755555  668999999


Q ss_pred             hhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhc----cCCCC
Q 019330          245 ATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWA----FGNES  285 (342)
Q Consensus       245 ~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~----fg~~~  285 (342)
                      +.+|+|++.  .+....++....+....+|..+-..    +|+..
T Consensus       232 Ry~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~  274 (442)
T TIGR00800       232 RFGKSKKTA--IWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY  274 (442)
T ss_pred             hhcCCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            999987764  3446666767777777777666655    77553

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PRK11375 allantoin permease; Provisional

Probab=98.14  E-value=0.0068  Score=59.29  Aligned_cols=295  Identities=11%  Similarity=0.005  Sum_probs=146.4

Q ss_pred             cccccccceeccCChHH-------HHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 019330           16 DSDAGAAFVLESKGEWW-------HAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCE   88 (342)
Q Consensus        16 ~~~~~~~~~~~~~~s~~-------~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~   88 (342)
                      ++|...++..+|+.+++       ...+++.+..++.|.++     ...++..++...++-..+...-+.+....-.   
T Consensus        14 n~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-----~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~---   85 (484)
T PRK11375         14 SEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-----LGLSTFSIMLAIILSAFFIAAVMVLNGAAGS---   85 (484)
T ss_pred             CCCCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence            56666666677766644       33334444334444442     2344454555544443333332333333211   


Q ss_pred             ccCcccccHHHHHHHHhCcchHHHHHHHHHH-HHHHhhHHHHHHhhhhhHHHHhhhhcC------CC----CchHHHHH-
Q 019330           89 KAGRRHIRFRELAADVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYP------NG----SLKLYEFI-  156 (342)
Q Consensus        89 ~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~l~~~~~~------~~----~~~~~~~~-  156 (342)
                         +...++.-+.|..||.+ |..+..+... +..+|=-..-....++.++.+.....+      ++    ......++ 
T Consensus        86 ---~~Gl~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~  161 (484)
T PRK11375         86 ---KYGVPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLIT  161 (484)
T ss_pred             ---ccCCChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHH
Confidence               23458999999999994 8777777774 466666666667777777766544321      11    12222232 


Q ss_pred             -HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccC--cchhhHhhHHHHHHHHHH
Q 019330          157 -AMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLES--SKSARIFSAFTSISIIAA  233 (342)
Q Consensus       157 -~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~f  233 (342)
                       +++.++..++.+. ..+.++++..++........+.+.+..+... ... +..+....+  ......+.+..++...+-
T Consensus       162 ~~i~~~l~~~~~~~-g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~i~~vig  238 (484)
T PRK11375        162 FLIFWLVNVGIGFG-GGKVLNKFTAILNPCIYIVFGGMAIWAISLV-GIG-PIFDYIPSGIQKAENSGFLFLVVINAVVA  238 (484)
T ss_pred             HHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-hhhccCcccccCCcchHHHHHHHHHHHHH
Confidence             3445677777664 4666777666666544333322222222222 000 000110000  011123456666655555


Q ss_pred             HH--hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHh----hhccCCCC--chhhhccCCCCCCCCCChhH
Q 019330          234 IF--GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSG----YWAFGNES--NSNILKSLMPDNGPSLAPTS  305 (342)
Q Consensus       234 sf--~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g----y~~fg~~~--~~~il~~~~~~~~~~~~~~~  305 (342)
                      ++  ...+.|...+..|++++.  .+...+++.+...+...+|+..    ...||+..  +.+++..+.+        .+
T Consensus       239 ~~~~~~~~~~D~tRy~k~~~~~--~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~--------~~  308 (484)
T PRK11375        239 VWAAPAVSASDFTQNAHSFRAQ--ALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS--------LF  308 (484)
T ss_pred             HHHHHHccccchhcccCChhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc--------hH
Confidence            56  455888988888877653  3445556655555554444332    34566544  2344443321        12


Q ss_pred             HHHHHHHHHHHHHhhhh-hhcchhhhhhHHH
Q 019330          306 VIGLAVVFVLLQLFAIG-LVSPQFHSSLQLF  335 (342)
Q Consensus       306 ~~~i~~~~~~i~l~~s~-pl~~~p~~~~~~~  335 (342)
                      ...++.+..+++.+..- ..+.+|.-..+.+
T Consensus       309 ~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~  339 (484)
T PRK11375        309 ASFFAVLVILMTTISTNATGNIIPAGYQIAA  339 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence            33334444455555442 2355554444443

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=98.11  E-value=0.00093  Score=60.38  Aligned_cols=136  Identities=14%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             HHHHHHHhhhhhhhhchHH---HHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcch
Q 019330           33 HAGFHLTTAIVGPTILTLP---YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW  109 (342)
Q Consensus        33 ~a~~~l~~~~iG~GiL~lP---~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~  109 (342)
                      +-.+-.+.+++|+|-=+==   .-|..-|+. |+...++++.+-..++..+.+..++   -+.+  +|.|+-+.++|+++
T Consensus         7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~---f~a~--~y~~~~~~v~~~~~   80 (349)
T COG3949           7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKK---FNAT--SYREILKYVSGPKF   80 (349)
T ss_pred             HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH---hccc--chHHHHHHHhhHHH
Confidence            3455666789999854422   224456666 5555566666666666666666554   3334  89999999999977


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHH--HHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330          110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI--AMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       110 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      + .+.|+.+.++.++.++.-+-..++.+++.++.         .+|.  ++..+++.-+-++++.+.+-.+..+-+-
T Consensus        81 ~-ki~d~~iif~lf~~~vVM~AGags~~~e~~~l---------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P  147 (349)
T COG3949          81 A-KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL---------PYWIGALIIILLVLILLFLGRVEGIITVNGIITP  147 (349)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhccchhHHHHHhCc---------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence            6 68899999999999999999999999888753         3343  3444555555667767776655444333

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=98.05  E-value=0.0027  Score=62.50  Aligned_cols=51  Identities=6%  Similarity=0.047  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 019330          224 AFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAV  275 (342)
Q Consensus       224 ~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~  275 (342)
                      ....+..+.|+| |-.......+|+|+|+| .++|++..+..++.++|.+..+
T Consensus       196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~r-~~PrAi~~~~i~~~~l~~l~~~  247 (507)
T TIGR00910       196 TLVVFVAFIGAYMGVEASASHINELENPGR-DYPLAMILLMIAAICLDAIGGF  247 (507)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHccCCcc-cccHHHHHHHHHHHHHHHHHHH
Confidence            344455568899 99999999999999986 5899999999988888876544

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=98.02  E-value=0.0057  Score=58.06  Aligned_cols=226  Identities=12%  Similarity=0.106  Sum_probs=129.9

Q ss_pred             HHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchH
Q 019330           31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM  110 (342)
Q Consensus        31 ~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g  110 (342)
                      |....+++.+-..|.....       .++..+++..++...+...-..+....-.      +...++.-+.|..||+ .|
T Consensus         7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~------~~Gl~~~v~sR~~FG~-~G   72 (386)
T TIGR02358         7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA------DTGLSAMGSLKLSLGS-KG   72 (386)
T ss_pred             HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccCcCHHHHHHHHHcc-ch
Confidence            5566667766676654211       44544544444433333322222222211      2234799999999999 58


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 019330          111 FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYS  190 (342)
Q Consensus       111 ~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~  190 (342)
                      ..+..+...+...|=-..-....++.++.+.+...+..  ....+.++..++..+.+.. ..+.++++..++........
T Consensus        73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~~~i~~  149 (386)
T TIGR02358        73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE--SPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWLLLIAT  149 (386)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999888888999999999876432221  1233445555566666655 36777777777766544444


Q ss_pred             HHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCccccchhhHHHHHHHHHHH
Q 019330          191 FLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPATGKMVKGLLMCYSVIFV  268 (342)
Q Consensus       191 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~  268 (342)
                      +...+....+.....    ...  +..+   .++..+++...-.+  .....++..+..|+|++  ..+...++..+...
T Consensus       150 ~~~~~~~~~~~~~~~----~~~--~~~~---~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~--~~~~~~~G~~i~~~  218 (386)
T TIGR02358       150 LWLLVVVFSKADLSE----LWN--RAGD---MSFAVAVELVIAMPLSWLPLIADYTRFARNPRH--VFLGTVLGYFIGSC  218 (386)
T ss_pred             HHHHHHHHhccchhh----hcC--CCCC---ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcc--eehHHHHHHHHHHH
Confidence            333332222221000    001  1111   23344444433222  33447777777766543  45667777888888


Q ss_pred             HHHHHhhHhhhccCCC
Q 019330          269 TFYSAAVSGYWAFGNE  284 (342)
Q Consensus       269 ~y~~~g~~gy~~fg~~  284 (342)
                      +...+|...-.+.++.
T Consensus       219 ~~~~~G~~~~~a~~~~  234 (386)
T TIGR02358       219 WMYFLGLAVTLATGQT  234 (386)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            8888888777666654

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.98  E-value=0.00012  Score=71.93  Aligned_cols=248  Identities=9%  Similarity=0.028  Sum_probs=151.3

Q ss_pred             eeccCChHHHHHHHHHhhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccccccc-CcccccHHHHH
Q 019330           24 VLESKGEWWHAGFHLTTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA-GRRHIRFRELA  101 (342)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~-lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~-~~~~~sy~~l~  101 (342)
                      ..+|+-+.+.-.+.-+..++|+|+.= ...+.++.|-..-++..++.+.....+..-+.|..-+.|.+ +    ++..-+
T Consensus        27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG----s~~~ya  102 (554)
T KOG1286|consen   27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG----SFYTYA  102 (554)
T ss_pred             hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc----cceeee
Confidence            45777788888888899999999864 45667777777666677777777788888888876665543 2    233334


Q ss_pred             HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHh-hh-hcCC-CCchHHHH--HHHHHHHHHHHhcCCCCcchh
Q 019330          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY-SD-LYPN-GSLKLYEF--IAMVTVVMIVLSQLPTFHSLR  176 (342)
Q Consensus       102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~-~~-~~~~-~~~~~~~~--~~i~~~i~~pl~~~~~l~~l~  176 (342)
                      ....|+-|| +.+..-..+.....+.+-....+.+++.+. .. .... ...+...|  .++..++++-+.-.+-..+.+
T Consensus       103 ~~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e  181 (554)
T KOG1286|consen  103 YRFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE  181 (554)
T ss_pred             eeeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence            455666566 788888888888888888888888888875 00 0000 01111111  122223333334444433344


Q ss_pred             HHHHHHHHHHHH-HHHHhhhhhhccCcCCCCCCCCccccC----cchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCc
Q 019330          177 HINLVSLLLSLG-YSFLVVGACINAGFSKNAPPKDYSLES----SKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPP  250 (342)
Q Consensus       177 ~~s~~~~~~~~~-~~~~~i~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p  250 (342)
                      .......+++.. +.++.++...--...+.......+.++    ..+..+.++++++.+..|+| +.-.+-...+|-|+|
T Consensus       182 f~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP  261 (554)
T KOG1286|consen  182 FSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNP  261 (554)
T ss_pred             ehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCC
Confidence            443333332221 111111111111111100000001111    11233668899999999999 999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhhHh
Q 019330          251 ATGKMVKGLLMCYSVIFVTFYSAAVSG  277 (342)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~y~~~g~~g  277 (342)
                      +| .+++++..++..+.++|...++.-
T Consensus       262 ~k-~IP~ai~~s~~ri~~~Yi~~~~~l  287 (554)
T KOG1286|consen  262 RK-AIPKAIKQSLLRILLFYILSSIVL  287 (554)
T ss_pred             cc-cccHHHHHHHHHHHHHHHHHHHHh
Confidence            96 599999999999999999877653

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=97.90  E-value=0.0014  Score=63.23  Aligned_cols=236  Identities=11%  Similarity=0.136  Sum_probs=157.9

Q ss_pred             eccCChHHHHHHHHHhhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTI-LTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      .+|+=....-.+.-+...||+|. ++.-.+.+++|-...++.-++.+...+..+.-|.|..-..|..+    +|...+.+
T Consensus        42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG----sF~~ya~r  117 (541)
T COG0833          42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG----SFSTYATR  117 (541)
T ss_pred             hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----chhhhhhh
Confidence            44555677888999999999996 47789999999999999999999999999999999877655333    58888888


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcC--CCCcchhHH-HH
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHI-NL  180 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~~~-s~  180 (342)
                      ..++.+| ..+...-.+...-++..-++..+..++...+.     ..+...|+.++.++++-+.+.  |-..+.-+. |.
T Consensus       118 fvdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~-----~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~  191 (541)
T COG0833         118 FVDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPD-----TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS  191 (541)
T ss_pred             hcCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC-----CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence            8888777 67777777777777777777777777777542     245566777766666555543  555555444 44


Q ss_pred             HHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCc---chhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchh
Q 019330          181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESS---KSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMV  256 (342)
Q Consensus       181 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~  256 (342)
                      +=++.++.+.++.++..+- +.+++++ -..++++.   -...+.++...+-+..||| +.-.+---..|-++|+| .++
T Consensus       192 iKV~~ii~Fii~gii~~~G-g~~~~~~-ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K-~iP  268 (541)
T COG0833         192 IKVLTIIGFIILGIIIICG-GGPTHGY-IGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK-SIP  268 (541)
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCCCCCC-cceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh-hhH
Confidence            4444333333322221111 1111110 01111111   1223567888888899999 88888777889999987 478


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 019330          257 KGLLMCYSVIFVTFYSA  273 (342)
Q Consensus       257 ~~~~~~~~~~~~~y~~~  273 (342)
                      |++.-...=..++|+..
T Consensus       269 kAik~vfwRIl~FYi~s  285 (541)
T COG0833         269 KAIKQVFWRILLFYILS  285 (541)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88777666666666643

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.89  E-value=0.0015  Score=63.76  Aligned_cols=52  Identities=10%  Similarity=0.089  Sum_probs=43.4

Q ss_pred             HHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHhhhccC
Q 019330          230 IIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSGYWAFG  282 (342)
Q Consensus       230 i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg  282 (342)
                      .+.++| |-.......+|+|+|+| +++|++..+..++.++|.+..+.-....+
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~  254 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP  254 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            457899 99999999999999987 59999999999999999877665444444

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=97.65  E-value=0.068  Score=52.38  Aligned_cols=158  Identities=6%  Similarity=0.038  Sum_probs=97.0

Q ss_pred             cccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHH--HHHHHHHHH-HHHHHhhhccccccccCcccc
Q 019330           20 GAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTC--LTVMGFVTF-YSYYLMSKVLDHCEKAGRRHI   95 (342)
Q Consensus        20 ~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~--l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~   95 (342)
                      ++...-.|+-+++...+.+..+.+|+ ..++.|....+.|+......  .....++.. +-...+.+-.++   .+  ..
T Consensus        34 ~dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~  108 (483)
T PRK09442         34 NEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YN--AV  108 (483)
T ss_pred             cceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--Cc
Confidence            34445566667787777777776665 77888877777776421111  011111111 111222222232   22  34


Q ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (342)
Q Consensus        96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l  175 (342)
                      |.+|.-++-||++..+.+..+...+..++....-+...+..++.++.       ......+++..+++.-.+...-++..
T Consensus       109 T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~av  181 (483)
T PRK09442        109 TLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-------ISYETGLLIFGITVALYTAFGGFRAV  181 (483)
T ss_pred             cHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999866667777766666667777777788888887764       23333445556666777888888888


Q ss_pred             hHHHHHHHHHHHHH
Q 019330          176 RHINLVSLLLSLGY  189 (342)
Q Consensus       176 ~~~s~~~~~~~~~~  189 (342)
                      .++..+-.+..+..
T Consensus       182 ~~TD~iQ~~i~~~~  195 (483)
T PRK09442        182 VLTDALQGIVMLVG  195 (483)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877776644443

>TIGR02119 panF sodium/pantothenate symporter

Probab=97.57  E-value=0.092  Score=51.25  Aligned_cols=157  Identities=6%  Similarity=0.093  Sum_probs=100.8

Q ss_pred             ccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHH--HHHHHHH-HHHHHhhhccccccccCccccc
Q 019330           21 AAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLT--VMGFVTF-YSYYLMSKVLDHCEKAGRRHIR   96 (342)
Q Consensus        21 ~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~--~~~~~~~-~s~~ll~~~~~~~~~~~~~~~s   96 (342)
                      +...-.|+-+++.....+..+.+|+ ..++.|....+.|+........  ..+.+.. .-...+.+..++   .+  ..|
T Consensus        34 dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T  108 (471)
T TIGR02119        34 EYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK---YN--AIT  108 (471)
T ss_pred             ceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--Ccc
Confidence            4556667778888888888888886 5677888888888642111100  1111110 001112222222   23  349


Q ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330           97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR  176 (342)
Q Consensus        97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~  176 (342)
                      .+|.-++-||++..+++..+...+.+++....-+...+..++.++.       .+....+++.++++.-.....-++...
T Consensus       109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GG~~av~  181 (471)
T TIGR02119       109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------LSYLTALFIFSSSVLIYTTFGGFRAVA  181 (471)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            9999999999766677888888888888877778888888887764       233334455556677777788888888


Q ss_pred             HHHHHHHHHHHHH
Q 019330          177 HINLVSLLLSLGY  189 (342)
Q Consensus       177 ~~s~~~~~~~~~~  189 (342)
                      ++..+-.+..+..
T Consensus       182 ~td~iQ~~v~~~~  194 (471)
T TIGR02119       182 LTDAIQGIVMFTG  194 (471)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877776544443

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=97.49  E-value=0.0089  Score=55.22  Aligned_cols=157  Identities=11%  Similarity=0.024  Sum_probs=107.1

Q ss_pred             hcccccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHh--hhcccccccc
Q 019330           13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLM--SKVLDHCEKA   90 (342)
Q Consensus        13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll--~~~~~~~~~~   90 (342)
                      ..+.+|+.+    .-..+.+..+-|=..++=|+|-+-=|..-.+-||+++.++.++-+++.---....  .-+.||   .
T Consensus        40 A~~~~DGvD----YvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~---~  112 (376)
T PF02554_consen   40 AHTMNDGVD----YVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH---K  112 (376)
T ss_pred             eeECCCCCC----CCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC---C
Confidence            334556643    4455567788899999999999999999999999999999887666544333332  233333   2


Q ss_pred             CcccccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC
Q 019330           91 GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP  170 (342)
Q Consensus        91 ~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~  170 (342)
                       .|  |.+|++++..||+ +|.+..+...+.+..+..++.....+.+...-.       .....++.+...+.+-+..-|
T Consensus       113 -G~--Si~~i~~~~lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~-------~~~~~~~~I~~Ai~~G~~~y~  181 (376)
T PF02554_consen  113 -GK--SIGEIAGKYLGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVNSPW-------AATSSLLFIPIAILFGLLVYK  181 (376)
T ss_pred             -Cc--cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh-------HHHHHHHHHHHHHHHhHhhee
Confidence             34  9999999999995 788888888888888888888777777654311       122334444444555555545


Q ss_pred             CCcchhHHHHHHHHHHH
Q 019330          171 TFHSLRHINLVSLLLSL  187 (342)
Q Consensus       171 ~l~~l~~~s~~~~~~~~  187 (342)
                      +=.++...+.+++...+
T Consensus       182 ~~~~~~~~t~i~vvll~  198 (376)
T PF02554_consen  182 RGGNLGPATIIGVVLLL  198 (376)
T ss_pred             cCCchHhhHHHHHHHHH
Confidence            44556777777776443

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>PRK11017 codB cytosine permease; Provisional

Probab=97.42  E-value=0.12  Score=49.44  Aligned_cols=174  Identities=10%  Similarity=0.055  Sum_probs=93.1

Q ss_pred             cccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCc
Q 019330           94 HIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFH  173 (342)
Q Consensus        94 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~  173 (342)
                      ..++..++|..||. .|..+..+...+...|=...-....++.++.+..       .....+.+++.++..+.++.. .+
T Consensus        70 G~~~~v~sR~~FG~-~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-------~~~~~~~~i~~~l~~~~~~~G-~~  140 (404)
T PRK11017         70 GLSTHLLARFSFGE-KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-------LDINLLIVLSGLLMTVTAYFG-IS  140 (404)
T ss_pred             CcCHHHHHHHHhch-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHH-HH
Confidence            35899999999999 5888887777777766555555556666665542       112224455556666666553 44


Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCcc
Q 019330          174 SLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPA  251 (342)
Q Consensus       174 ~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~  251 (342)
                      .++++...+........+...+....+....+ +..+  ..+.   ....+..++...+-.+  .-.+.++..+..|+|+
T Consensus       141 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~-~~~~--~~~~---~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~  214 (404)
T PRK11017        141 ALTILSRIAVPAIALLGGYSVWLAVNDVGGLD-GLKA--IVPA---EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAK  214 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-hhhc--CCCC---CcccHHHHHHHHHHHHHHhHhcCCChHhhccCcc
Confidence            44455444444322222222222222110000 0000  0011   1124555666555555  5678888888877665


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhHhhhccCCC
Q 019330          252 TGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNE  284 (342)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~  284 (342)
                      +.  ......++.+...+...+|...-.+.|+.
T Consensus       215 ~~--~~~~~lg~~i~~~~~~~~G~~~a~~~~~~  245 (404)
T PRK11017        215 IA--VLATMVAFFLGNSLMFIFGAAGAAVYGQA  245 (404)
T ss_pred             ce--eehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            42  23455555566666666666555556553

>TIGR00813 sss transporter, SSS family

Probab=97.35  E-value=0.14  Score=48.94  Aligned_cols=149  Identities=9%  Similarity=0.084  Sum_probs=96.1

Q ss_pred             cCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           27 SKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      |+-+++...+.+..+.+|+ ..++.|....+.|+. +....+...........+..+..++   .+  ..|.+|..++-|
T Consensus         3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T~~e~l~~Ry   76 (407)
T TIGR00813         3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN---NG--AYTMPEYLEKRF   76 (407)
T ss_pred             CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---cC--CCchhHHHHHHh
Confidence            3344566666666665554 778888888888864 2222222222222333444444333   23  349999999999


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~  185 (342)
                      |++..+.+..+...+..+......+...+..++.++.       ......+++.+++++-.+...-++...++..+-.+.
T Consensus        77 g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i  149 (407)
T TIGR00813        77 GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI  149 (407)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence            9876777777777788888888888888888888764       233334455556666677777888888887777665


Q ss_pred             HHH
Q 019330          186 SLG  188 (342)
Q Consensus       186 ~~~  188 (342)
                      ++.
T Consensus       150 ~~~  152 (407)
T TIGR00813       150 MIL  152 (407)
T ss_pred             HHH
Confidence            443

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PRK12488 acetate permease; Provisional

Probab=97.32  E-value=0.13  Score=51.35  Aligned_cols=159  Identities=11%  Similarity=0.207  Sum_probs=100.3

Q ss_pred             cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHH-HHHHhhhccccccccCcccc
Q 019330           18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFY-SYYLMSKVLDHCEKAGRRHI   95 (342)
Q Consensus        18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~-s~~ll~~~~~~~~~~~~~~~   95 (342)
                      +.++.+.-.|+-+++...+.+..+.+++ ..++.|......|+- +....+. ..+.+. ...++.+-.++   .+  ..
T Consensus        58 s~~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~---~g--~~  130 (549)
T PRK12488         58 SASDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAERLRN---LG--KY  130 (549)
T ss_pred             ChHHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHH---CC--Cc
Confidence            3444556677778888888888887776 568899888888875 2222111 111111 12223333332   23  35


Q ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (342)
Q Consensus        96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l  175 (342)
                      |.+|.-++=||.+.-|.+..+...+.++.-...-+...+..++.++.       .+...-+++..+++.--+..--++..
T Consensus       131 T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-------i~~~~~iii~~~i~~~Yt~~GGm~av  203 (549)
T PRK12488        131 TFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-------ISYLYAVVIVGALMVLYVTFGGMLAT  203 (549)
T ss_pred             chHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhccchhHH
Confidence            99999988888555678777777777777777777777777777753       23333345555666677777788888


Q ss_pred             hHHHHHHHHHHHHHH
Q 019330          176 RHINLVSLLLSLGYS  190 (342)
Q Consensus       176 ~~~s~~~~~~~~~~~  190 (342)
                      .++..+-.+..+...
T Consensus       204 ~~td~iQ~~im~~~~  218 (549)
T PRK12488        204 TWVQIIKAVLLLSGT  218 (549)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888877766544433

>PRK09395 actP acetate permease; Provisional

Probab=97.21  E-value=0.19  Score=50.13  Aligned_cols=157  Identities=14%  Similarity=0.172  Sum_probs=93.5

Q ss_pred             cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCccccc
Q 019330           18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIR   96 (342)
Q Consensus        18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~s   96 (342)
                      +.++.+.-.|+-+++...+.+..+.+|+ ..++.|....+.|+.. ....+...+.......++.+-.++   .+  ..|
T Consensus        60 s~~df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~---~g--~~T  133 (551)
T PRK09395         60 SASDFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN---LG--KYT  133 (551)
T ss_pred             CHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh---CC--Ccc
Confidence            3444456667777777777777777765 6788998888888753 221111111111112223332222   33  359


Q ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330           97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR  176 (342)
Q Consensus        97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~  176 (342)
                      ++|.-+.=||++.-|.+..+...+..+.-...-+...+..++.+..       .+....+++..+++.--+..-=++...
T Consensus       134 ~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-------i~~~~~ili~~~i~~iYt~~GGm~av~  206 (551)
T PRK09395        134 FADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-------LNYHVAVVLVGVLMMVYVLFGGMLATT  206 (551)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            9999999898655667766666665555556666666776766653       233333455556666667777777777


Q ss_pred             HHHHHHHHHHH
Q 019330          177 HINLVSLLLSL  187 (342)
Q Consensus       177 ~~s~~~~~~~~  187 (342)
                      ++..+-.+..+
T Consensus       207 ~TD~iQ~iim~  217 (551)
T PRK09395        207 WVQIIKAVLLL  217 (551)
T ss_pred             HHHHHHHHHHH
Confidence            77766654433

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=97.14  E-value=0.25  Score=49.21  Aligned_cols=156  Identities=13%  Similarity=0.207  Sum_probs=94.0

Q ss_pred             ccccceeccCChHHHHHHHHHhhhhh-hhhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHhhhccccccccCccccc
Q 019330           19 AGAAFVLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIR   96 (342)
Q Consensus        19 ~~~~~~~~~~~s~~~a~~~l~~~~iG-~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~s   96 (342)
                      .++.+.-.|+-+++...+.+..+.++ ...++.|....+.|+- +....+. ..+.. ....++.+-.++   .+.  .|
T Consensus        59 ~~dy~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr---~g~--~T  131 (549)
T TIGR02711        59 RSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRN---LGR--YT  131 (549)
T ss_pred             chhheeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHH---cCC--cc
Confidence            44455667777777777777777666 4788999888788874 2222211 11111 122333433333   333  49


Q ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330           97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR  176 (342)
Q Consensus        97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~  176 (342)
                      .+|..++=||.|.-|.+..+...+.+..-....+...+..++.++.       .....-+++..+++.--+...-++...
T Consensus       132 ~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~  204 (549)
T TIGR02711       132 FADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-------LNYHVAVVLVGILMVMYVLFGGMLATT  204 (549)
T ss_pred             HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            9999888887655567666666666666666667777777777653       222333455556666667777777777


Q ss_pred             HHHHHHHHHHHH
Q 019330          177 HINLVSLLLSLG  188 (342)
Q Consensus       177 ~~s~~~~~~~~~  188 (342)
                      ++..+-.+..+.
T Consensus       205 ~td~iQ~~im~~  216 (549)
T TIGR02711       205 WVQIIKAVLLLF  216 (549)
T ss_pred             HHHHHHHHHHHH
Confidence            777766554433

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.34  Score=46.41  Aligned_cols=180  Identities=14%  Similarity=0.111  Sum_probs=109.7

Q ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcC--CCCcc
Q 019330           97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHS  174 (342)
Q Consensus        97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~  174 (342)
                      =-.+++..||. +|.++..+.+.+.+.|=...-.+..++...+.       ...+...++++..+++.-.++.  |-++.
T Consensus        83 qmi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-------~~~~~~~~ili~g~l~~l~~ifG~r~l~~  154 (442)
T COG1457          83 QMILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGSG-------TGLPVWAGILIIGVLMTLVTIFGYRALHK  154 (442)
T ss_pred             hheeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhccccccC-------CCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34567888999 68899999999999999999999888872111       2345566666676676666666  44555


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhc-cCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCcc
Q 019330          175 LRHINLVSLLLSLGYSFLVVGACIN-AGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPA  251 (342)
Q Consensus       175 l~~~s~~~~~~~~~~~~~~i~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~  251 (342)
                      +.+++.......+.+.+   +.... +...+.      . ....+....++..+++..+-.+  .-+...+..+-+|+|+
T Consensus       155 l~~~a~~~~~~lf~~l~---~~~~~~~~~~~~------~-~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t  224 (442)
T COG1457         155 LERIAVPLLLLLFLYLL---ALLFRSKGGLDA------L-WVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPT  224 (442)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHhcccccce------e-eccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence            55555554443333322   22222 111111      0 0011122335666666655555  6677888888888776


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhHhhhccCCCC-chhhhccCC
Q 019330          252 TGKMVKGLLMCYSVIFVTFYSAAVSGYWAFGNES-NSNILKSLM  294 (342)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~-~~~il~~~~  294 (342)
                      .++.-.....+......+-.+.|.+.-.+-|+.. ..+....+.
T Consensus       225 ~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G  268 (442)
T COG1457         225 PSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG  268 (442)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence            3334456667777777777788888887777666 334444444

>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=96.99  E-value=0.16  Score=48.51  Aligned_cols=275  Identities=18%  Similarity=0.208  Sum_probs=144.9

Q ss_pred             CCCCCchhhhcccccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhH--HHHHHHHHHHHHHHHHHHhh
Q 019330            4 PTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGL--GFTCLTVMGFVTFYSYYLMS   81 (342)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~--g~~~l~~~~~~~~~s~~ll~   81 (342)
                      +.+.||++.   ++|-+.++..+|.=++++-..-=....++++.-.+...--+.|+=.  +.+...     .-|....+.
T Consensus        34 ~s~~~~fL~---N~DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~-----vG~~~~~~f  105 (572)
T KOG2466|consen   34 ESLSESFLT---NPDLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVW-----VGYLFTAIF  105 (572)
T ss_pred             chhcccccc---CCCCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHH-----HHHHHHHHH
Confidence            345566665   6666665555666687776666666666666666655555666543  332222     222222211


Q ss_pred             hccccccccC-cccccHHHHHHHHhCcchHHHH---HHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc------CC----
Q 019330           82 KVLDHCEKAG-RRHIRFRELAADVLGSGWMFYF---VIFIQTAINTGVGIGAILLAGECLQIMYSDLY------PN----  147 (342)
Q Consensus        82 ~~~~~~~~~~-~~~~sy~~l~~~~~G~~~g~~~---v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~------~~----  147 (342)
                      -..+..  .| .-+.+++-..+..||- +|..+   ..+...+..+|+   ..-+.+++.+-+++...      ||    
T Consensus       106 ~~lns~--~G~~yhIsFpv~sR~sFGi-ygS~~pIi~R~vma~vwYg~---~awiGgecV~lmL~si~~~~~hipntl~~  179 (572)
T KOG2466|consen  106 LVLNSR--PGSDYHISFPVLSRSSFGI-YGSLWPIINRVVMACVWYGV---NAWIGGECVQLMLKSIFKSFSHIPNTLGK  179 (572)
T ss_pred             HHHccC--CCcccccceeeeeeeehhh-hHhHHHHHHHHHHHHhhhhh---hhhhhhhhHHHHHHHHhhhhhcCccccCC
Confidence            111111  22 2356888888888887 55443   333333333443   23455666665554421      22    


Q ss_pred             CCchHHHHH--HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHH
Q 019330          148 GSLKLYEFI--AMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAF  225 (342)
Q Consensus       148 ~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (342)
                      ......+++  +++-++.+|+.+.| .++++++=....+.+...++.+++....+--..++-.++ +.........|.+.
T Consensus       180 ~~~tt~e~i~FfIFwv~s~~~~~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~-~st~~gs~~aWa~~  257 (572)
T KOG2466|consen  180 PGTTTYEFIGFFIFWVASLPFYWFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDS-KSTVSGSAHAWAFV  257 (572)
T ss_pred             CCCchHHHHHHHHHHHHhhheeecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccC-CCcccccchhHHHH
Confidence            233444444  44557777877775 677777766666555544444444333322111111111 11111122345666


Q ss_pred             HHHHHHHHHH--hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHH----HHHhhHhhhccCCCC--chhhhccCCCC
Q 019330          226 TSISIIAAIF--GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTF----YSAAVSGYWAFGNES--NSNILKSLMPD  296 (342)
Q Consensus       226 ~~~~i~~fsf--~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y----~~~g~~gy~~fg~~~--~~~il~~~~~~  296 (342)
                      .++...+-.|  ...|.|..-+=-|+|.+.  ...-.++.-+.+.+.    .+.+..++..||.+.  +-++++++..+
T Consensus       258 ~~i~~~~~~fstl~~N~pDFsRF~ksp~a~--~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~  334 (572)
T KOG2466|consen  258 RSIMSCIANFSTLIVNAPDFSRFAKSPNAI--WWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDT  334 (572)
T ss_pred             HHHHHHHhccchhhccCchhHhhcCCCCcc--chhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhcc
Confidence            6666666666  778888877777777553  222233333333333    344556888999995  55778777754

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=96.72  E-value=0.036  Score=53.56  Aligned_cols=239  Identities=11%  Similarity=0.089  Sum_probs=110.4

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHH--hhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFR--GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~--~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      +|+.+.++-+..-....+....+.+-....  ..++..+++..++...+...-..+....-.+   .+   .++..++|.
T Consensus         6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r---~G---l~~~v~sR~   79 (440)
T PF02133_consen    6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR---TG---LPTMVLSRA   79 (440)
T ss_dssp             G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC---C------HHHHTTT
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc---cC---CCchhcchh
Confidence            555554544444444444444333333322  2344445544444433333222222222111   22   368899999


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCC--------CchHHHHH--HHHHHHHHHHhcCCCCc
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG--------SLKLYEFI--AMVTVVMIVLSQLPTFH  173 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~--------~~~~~~~~--~i~~~i~~pl~~~~~l~  173 (342)
                      .||. .|..+..+...+...|=...-....++.+..+.+...+..        ......++  ++..++..+.... -.+
T Consensus        80 ~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-g~~  157 (440)
T PF02133_consen   80 SFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIY-GMK  157 (440)
T ss_dssp             TS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCT-HHH
T ss_pred             ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhc-CHH
Confidence            9999 5999999999999999999999999999999887543210        00111121  2223344444433 355


Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH--hhccHHHHhhhcCCcc
Q 019330          174 SLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQATLAPPA  251 (342)
Q Consensus       174 ~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~  251 (342)
                      .++.+..+.........+........+...  .+..+.+.... +.+  .+..++...+-.+  .-.+.++..+.+|+++
T Consensus       158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~--~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~  232 (440)
T PF02133_consen  158 ALRRLAVIAAPILLVVFIGMLIWALSKAGG--GPLLSAPASPS-PSG--SFLAAIALVIGSWISWAPNASDYSRYAKSDT  232 (440)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHCT---HHHCCS--S-----S---HHHHHHHHHCCCHHHHCCCHHHHTTC--HH
T ss_pred             HHHhHHhhhhHHHHhhhhheeEEEeecCCc--chhhhCcccch-hHH--HHHHHHHHHHhhhhhhhhccccHHhhCCCCC
Confidence            555555555443322222222222221100  00001000000 000  2444444444333  4566778888888766


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhHhhh
Q 019330          252 TGKMVKGLLMCYSVIFVTFYSAAVSGYW  279 (342)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~  279 (342)
                      +.  .+...+++.........+++.+-.
T Consensus       233 ~~--~~~~~~~~~~~~~~~~~~g~lg~~  258 (440)
T PF02133_consen  233 SA--WWGFWLGFPGGFIPFVLVGILGAA  258 (440)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc--EEEEeehhhhHHHHHHHHHHHHHH
Confidence            53  455666666666666665555443

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=96.32  E-value=1.2  Score=43.72  Aligned_cols=148  Identities=9%  Similarity=0.060  Sum_probs=93.3

Q ss_pred             ccCChHHHHHHHHHhhhhh-hhhchHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHhhhccccccccCcccccHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLT---VMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG-~GiL~lP~~f~~~G~~~g~~~l~---~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~  101 (342)
                      .|+-..+-......-+.++ --.+++|....+.|+...-....   .......+-...+.+-.++   .+  -.|.+|.-
T Consensus        37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~~--~~T~~d~l  111 (493)
T COG0591          37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA---RG--ATTIPDFL  111 (493)
T ss_pred             CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC--CccHHHHH
Confidence            3333333455555555555 78999999999999874322222   2222222223333333222   22  35999999


Q ss_pred             HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 019330          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (342)
Q Consensus       102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~  181 (342)
                      ++=||+++.|.+..+...+..+.-+..-++..+..++..+.       .+...-+++.+.++..-...--++...++..+
T Consensus       112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i  184 (493)
T COG0591         112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------ISYVTGILIGALIVALYTFLGGLRAVVWTDFI  184 (493)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            99999557889999999999999999999999999966654       23333334444555566666667777777665


Q ss_pred             HHHH
Q 019330          182 SLLL  185 (342)
Q Consensus       182 ~~~~  185 (342)
                      --..
T Consensus       185 qg~i  188 (493)
T COG0591         185 QGLI  188 (493)
T ss_pred             HHHH
Confidence            5443

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=96.27  E-value=0.22  Score=47.55  Aligned_cols=150  Identities=13%  Similarity=0.231  Sum_probs=87.4

Q ss_pred             ccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      .|+-+++...+.+..+.+|+ ..++.|....+.|+. +....+............+.+-.++   .+  ..|.+|.-++-
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e~~~~R   78 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRR---SG--AVTIPEYLEKR   78 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHH---TT----SHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhcc---cc--hhhhhhhhhhh
Confidence            34456677777777777776 678889888888886 3333333333333344445554443   33  34999999999


Q ss_pred             hCcch-HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330          105 LGSGW-MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (342)
Q Consensus       105 ~G~~~-g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~  183 (342)
                      ||++. .+.+..+...+.........+...+..++.+++       .+....+++..+++.-.+..--++...+...+-.
T Consensus        79 yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~  151 (406)
T PF00474_consen   79 YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG  151 (406)
T ss_dssp             T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred             cCCchhhhhhcccccchhhhhhhhccccccccchhhccc-------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence            99964 256655656666667777777777887777754       3444445555666666778877888887777666


Q ss_pred             HHHHH
Q 019330          184 LLSLG  188 (342)
Q Consensus       184 ~~~~~  188 (342)
                      ++.+.
T Consensus       152 ~i~~~  156 (406)
T PF00474_consen  152 VIMII  156 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=96.16  E-value=0.22  Score=48.45  Aligned_cols=111  Identities=17%  Similarity=0.164  Sum_probs=76.3

Q ss_pred             cccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHh--hhccccccccCcc
Q 019330           16 DSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLM--SKVLDHCEKAGRR   93 (342)
Q Consensus        16 ~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll--~~~~~~~~~~~~~   93 (342)
                      .+|+.+    .-..+.+..+-|=+.++-|+|-+-=|..-++.||.+|.++.++-+++.---...+  .-+.||   .+ +
T Consensus        43 ~nDG~D----YVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~---~G-~  114 (575)
T COG1966          43 KNDGVD----YVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH---GG-K  114 (575)
T ss_pred             ccCCcc----cccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc---CC-c
Confidence            556654    4445567778888889999999999999999999999999888766554332222  223332   22 3


Q ss_pred             cccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhH
Q 019330           94 HIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL  137 (342)
Q Consensus        94 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l  137 (342)
                        |.+|++++..|++ .+.+..+...+....+..++.......+
T Consensus       115 --Si~~ia~~~lG~~-a~~~~~~~~l~iliiv~Avfa~vv~~~l  155 (575)
T COG1966         115 --SIGEIAGKYLGRT-AKVFFLLLALILLILVGAVFAAVIAKLL  155 (575)
T ss_pred             --cHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              9999999999995 5576666555555555444444444433

>PRK15015 carbon starvation protein A; Provisional

Probab=96.16  E-value=0.2  Score=49.84  Aligned_cols=142  Identities=11%  Similarity=0.018  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHH--HhhhccccccccCcccccHHHHHHHHhCc
Q 019330           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYY--LMSKVLDHCEKAGRRHIRFRELAADVLGS  107 (342)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~--ll~~~~~~~~~~~~~~~sy~~l~~~~~G~  107 (342)
                      +.+--+-|=+.++=|+|-+-=|..-.+.||+++.++.++-.++.---..  .|.-+.|+   . .|  |.+|++++..|+
T Consensus        84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~---~-Gr--Sig~ia~~~iG~  157 (701)
T PRK15015         84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRR---D-GR--SLGELVKEEMGP  157 (701)
T ss_pred             CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecC---C-Cc--cHHHHHHHHhhH
Confidence            3345677888899999999999999999999999998876554332222  23333333   2 34  999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCch-HHHHHHHHHHHHHHHhc-CCCCcchhHHHHHHHHH
Q 019330          108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLK-LYEFIAMVTVVMIVLSQ-LPTFHSLRHINLVSLLL  185 (342)
Q Consensus       108 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~-~~~~~~i~~~i~~pl~~-~~~l~~l~~~s~~~~~~  185 (342)
                      + ++.+..+...+.+.....++..++...+..-        .+. ...++.+...+.+-+.+ .++.......|.+++++
T Consensus       158 ~-~~~lfli~i~~iliiviAvfalvvv~al~~s--------P~~~fsv~~tIpiAl~mG~~l~~~r~g~v~~~SiiGvvl  228 (701)
T PRK15015        158 T-AGVIALVACFMIMVIILAVLAMIVVKALTHS--------PWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVF  228 (701)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------cHHHHHHHHHHHHHHHHHHHheeecCCchHHHHHHHHHH
Confidence            4 7777777776666666666666655555321        111 12233333333333322 23455555667777764


Q ss_pred             H
Q 019330          186 S  186 (342)
Q Consensus       186 ~  186 (342)
                      .
T Consensus       229 l  229 (701)
T PRK15015        229 L  229 (701)
T ss_pred             H
Confidence            3

>TIGR00835 agcS amino acid carrier protein

Probab=95.99  E-value=0.33  Score=46.43  Aligned_cols=81  Identities=14%  Similarity=0.027  Sum_probs=51.6

Q ss_pred             CChHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccH-----HHHH
Q 019330           28 KGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRF-----RELA  101 (342)
Q Consensus        28 ~~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy-----~~l~  101 (342)
                      +-|.+|+.+..+.+.+|+| |+.+|.+.+..| ..+++++-+.+++..-+.+.-.-...+.++. .++.+|     ..+-
T Consensus        46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~-~~~g~~~GGP~yyi~  123 (425)
T TIGR00835        46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER-DADGVFRGGPMYYIK  123 (425)
T ss_pred             CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee-CCCCCEecChHHHHH
Confidence            3578999999999999998 999999976665 5577777666665554433332222221111 111136     6777


Q ss_pred             HHHhCcchH
Q 019330          102 ADVLGSGWM  110 (342)
Q Consensus       102 ~~~~G~~~g  110 (342)
                      +.+.||..|
T Consensus       124 ~gl~~k~lg  132 (425)
T TIGR00835       124 KGLGMRWLA  132 (425)
T ss_pred             HHhCccHHH
Confidence            777666334

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=95.83  E-value=2.1  Score=42.14  Aligned_cols=162  Identities=7%  Similarity=-0.006  Sum_probs=89.7

Q ss_pred             cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHhhhccccccccCcccc
Q 019330           18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHI   95 (342)
Q Consensus        18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~   95 (342)
                      +.++.+.-.|+-+++...+.+..+.+++ ..++.|....+.|+-. . +..+...+.. ....++..-.+.....+.+..
T Consensus        31 s~~dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~  108 (502)
T PRK15419         31 NFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNNAL  108 (502)
T ss_pred             ChhHheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence            3444556667777887777777777766 6677898888888753 1 1111111111 111122111110000011234


Q ss_pred             cHHHHHHHHhCcc--hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCc
Q 019330           96 RFRELAADVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFH  173 (342)
Q Consensus        96 sy~~l~~~~~G~~--~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~  173 (342)
                      |.+|.-++=||++  .-+.+..+...+....-+..-+...+..++.++.       .+....+++.++++.--+..-=++
T Consensus       109 T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~  181 (502)
T PRK15419        109 TLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-------MSYETALWAGAAATILYTFIGGFL  181 (502)
T ss_pred             eHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhhhHH
Confidence            8889888889863  2333444444444444444445556666666653       233334455566777777887888


Q ss_pred             chhHHHHHHHHHHHH
Q 019330          174 SLRHINLVSLLLSLG  188 (342)
Q Consensus       174 ~l~~~s~~~~~~~~~  188 (342)
                      ...++-.+-.+.++.
T Consensus       182 aV~~TD~iQ~~imi~  196 (502)
T PRK15419        182 AVSWTDTVQASLMIF  196 (502)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888887777655443

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=95.80  E-value=2.4  Score=42.39  Aligned_cols=156  Identities=8%  Similarity=0.028  Sum_probs=94.5

Q ss_pred             ccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccH
Q 019330           19 AGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRF   97 (342)
Q Consensus        19 ~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy   97 (342)
                      .++.+.-.|+-++|...+.+..+.+++ ..++.|......|+-.-... ............++.+-.++   .+  ..|.
T Consensus        24 ~~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr---~~--~~T~   97 (552)
T TIGR03648        24 TSEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRK---FG--KYTV   97 (552)
T ss_pred             hHHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHH---CC--CccH
Confidence            344556677778888888888887755 67888887777776421111 11111111122344444443   33  3488


Q ss_pred             HHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhH
Q 019330           98 RELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRH  177 (342)
Q Consensus        98 ~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~  177 (342)
                      +|.-++=||+|..|++..+...+....-....+...+..++.+..       .+...-+++..+++.--+..--++...+
T Consensus        98 ~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-------i~~~~~iii~~~i~~iYt~~GG~~aV~~  170 (552)
T TIGR03648        98 PDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-------VDFETGVFIGMAIVFFYAVLGGMKGVTW  170 (552)
T ss_pred             HHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            898888898655567776666666666666666677777777653       2333334455566666677777777777


Q ss_pred             HHHHHHHHHH
Q 019330          178 INLVSLLLSL  187 (342)
Q Consensus       178 ~s~~~~~~~~  187 (342)
                      .-.+-.+.++
T Consensus       171 TD~iQ~iim~  180 (552)
T TIGR03648       171 TQVAQYIVLI  180 (552)
T ss_pred             HHHHHHHHHH
Confidence            7666654433

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.69  E-value=0.37  Score=46.95  Aligned_cols=247  Identities=11%  Similarity=0.074  Sum_probs=112.6

Q ss_pred             HHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchH
Q 019330           31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM  110 (342)
Q Consensus        31 ~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g  110 (342)
                      .+...|.+++..-|.. -++.+.....|-..-.-..++.+.+...+..-|.|.+-..|..+.-   |--.+. .-|+|++
T Consensus        55 ~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgL---y~waa~-lap~k~~  129 (550)
T KOG1289|consen   55 IFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGL---YFWAAV-LAPPKYG  129 (550)
T ss_pred             HHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcH---HHHHHH-hcCcchh
Confidence            3344455555544432 2444444434444333334444555555566677765554433432   322222 2266666


Q ss_pred             HH---HHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCC--CCcchhHHHHHHHHH
Q 019330          111 FY---FVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLP--TFHSLRHINLVSLLL  185 (342)
Q Consensus       111 ~~---~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~s~~~~~~  185 (342)
                      +.   ++.....+-+.....+-....++.+.......+++...+......+...+.+..+++.  --+.+++++.+++..
T Consensus       130 ~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~  209 (550)
T KOG1289|consen  130 PFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYL  209 (550)
T ss_pred             hHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            43   3333333222222222222333333333333334432222111223333333333322  235666777666665


Q ss_pred             HHHHHHHhhhhhhccCcCCCCCCCCccccC----cc--hhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhH
Q 019330          186 SLGYSFLVVGACINAGFSKNAPPKDYSLES----SK--SARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKG  258 (342)
Q Consensus       186 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~  258 (342)
                      .+...++..+.......++.+-+++...++    .+  +.+-+.+.-++-.-.+.+ |......+.+|-|+++++ .+|.
T Consensus       210 ~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~-aPrg  288 (550)
T KOG1289|consen  210 NLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKA-APRG  288 (550)
T ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhh-ccHH
Confidence            444333222221111111100001111111    11  112245555566666777 888999999999999874 6777


Q ss_pred             HHHHHHHHHHHHHHHhhHhhhccCC
Q 019330          259 LLMCYSVIFVTFYSAAVSGYWAFGN  283 (342)
Q Consensus       259 ~~~~~~~~~~~y~~~g~~gy~~fg~  283 (342)
                      +..+..+++++=..+-+.-..+-+|
T Consensus       289 Ii~s~~i~~i~gw~~~I~i~~~i~~  313 (550)
T KOG1289|consen  289 IISSIAIGFILGWIIIIGIAYTIPD  313 (550)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7777777766655555554555564

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=95.32  E-value=0.45  Score=44.94  Aligned_cols=79  Identities=13%  Similarity=0.231  Sum_probs=60.5

Q ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (342)
Q Consensus        96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l  175 (342)
                      -..+++++.||+ .|+.+..+.+.+.|++++++.+...++.++++.+      ..+.+.|.++..+..+-++.. .++++
T Consensus       256 ~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~------k~~y~~~v~~~~l~s~~ia~~-Gl~~I  327 (378)
T TIGR00796       256 ILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP------KLSYKTWVIVFTLFSFIVANL-GLTQI  327 (378)
T ss_pred             HHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHh-CHHHH
Confidence            577899999999 7999999999999999999999999999988854      256666766666666655554 35544


Q ss_pred             hHHHHHH
Q 019330          176 RHINLVS  182 (342)
Q Consensus       176 ~~~s~~~  182 (342)
                      -.++..-
T Consensus       328 i~~~~Pv  334 (378)
T TIGR00796       328 ISISIPV  334 (378)
T ss_pred             HHHHHHH
Confidence            4443333

transmembrane helical spanners.

>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.26  E-value=0.065  Score=53.12  Aligned_cols=54  Identities=13%  Similarity=0.143  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHHhhHh
Q 019330          223 SAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSAAVSG  277 (342)
Q Consensus       223 ~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g  277 (342)
                      ++-..++++.-+= +...=-..-.|+|+|++. ++|-...+...++++|.+..+.-
T Consensus       295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkS-IP~GTl~ava~Tf~~Yvl~~flm  349 (945)
T KOG1288|consen  295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKS-IPKGTLSAVAFTFFVYVLVIFLM  349 (945)
T ss_pred             ehhhhheeeeccchhhhcCCCcCccccCcccc-CCccchHHHHHHHHHHHHHHHHh
Confidence            4444555554442 332223345699999984 89999999999999999877643

>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]

Probab=95.18  E-value=0.11  Score=50.86  Aligned_cols=227  Identities=11%  Similarity=0.104  Sum_probs=117.8

Q ss_pred             HHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHH
Q 019330           33 HAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFY  112 (342)
Q Consensus        33 ~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~  112 (342)
                      ....|+...|+   .|=++|...|+|...+.+++.....++..|..=-....+++...+..  .|--+++ ..|+++| -
T Consensus        39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yflis~-slg~efg-g  111 (643)
T KOG2083|consen   39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYFLISR-SLGPEFG-G  111 (643)
T ss_pred             hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEEEEEe-ccccccc-c
Confidence            34445544443   46789999999999999888887776666543333333332111111  2333332 3466555 4


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH---H
Q 019330          113 FVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG---Y  189 (342)
Q Consensus       113 ~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~---~  189 (342)
                      .+.++..+.+.-.+..|++..++....+++.... +....  .-.+..++.+-++..+    .+|.+-+-+++-+.   .
T Consensus       112 sigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~-~~i~g--i~~vt~~ill~i~~ag----~~w~~k~q~~ll~il~ia  184 (643)
T KOG2083|consen  112 SIGIIYAFANAVATAMYVVGFAESVAHLFETESK-EMIDG--IGSVTVLILLAINVAG----VEWEAKLQIVLLLILLIA  184 (643)
T ss_pred             hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH-HHhcc--hhHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHH
Confidence            5556666777788899999999999999876320 01111  1122333444444443    23333333321111   1


Q ss_pred             HHHhhhhhhc-cC-cCCC--CCCCCccccC-cc-hhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330          190 SFLVVGACIN-AG-FSKN--APPKDYSLES-SK-SARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC  262 (342)
Q Consensus       190 ~~~~i~~~i~-~~-~~~~--~~~~~~~~~~-~~-~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~  262 (342)
                      ..--+..++. .. .+.+  ....+.-.++ .+ ..+-..+|+-++++.=+. +.-.=..+..++|+|++. .++-...+
T Consensus       185 i~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~-IP~GaL~A  263 (643)
T KOG2083|consen  185 IADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKA-IPLGALLA  263 (643)
T ss_pred             HHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhh-cccchhhh
Confidence            1111111111 11 0000  0000000000 00 000124555556666665 555555677899999874 78888899


Q ss_pred             HHHHHHHHHHHh
Q 019330          263 YSVIFVTFYSAA  274 (342)
Q Consensus       263 ~~~~~~~y~~~g  274 (342)
                      ...+..+|+.+.
T Consensus       264 i~vst~~yl~~i  275 (643)
T KOG2083|consen  264 IGVSTLLYLIFI  275 (643)
T ss_pred             hhhhhhhhhhhh
Confidence            999999997554

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=95.17  E-value=0.23  Score=47.48  Aligned_cols=78  Identities=14%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (342)
Q Consensus        96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l  175 (342)
                      =..+++++.+|+ .|..+..+++.+.|+-++++-....+|.++++++      ..+.+.|.++.+++-+-++... ++++
T Consensus       262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~------kisY~~~v~i~~i~S~~ian~G-l~~I  333 (427)
T PF05525_consen  262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP------KISYKVWVIIFTIFSFIIANLG-LDQI  333 (427)
T ss_pred             HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccChHHHHHHHHHHHHHHHHhC-HHHH
Confidence            577889999999 7999999999999999999999999999999986      4677788888877777777773 5544


Q ss_pred             hHHHHH
Q 019330          176 RHINLV  181 (342)
Q Consensus       176 ~~~s~~  181 (342)
                      -.++.-
T Consensus       334 i~~s~P  339 (427)
T PF05525_consen  334 IKISVP  339 (427)
T ss_pred             HHHHHH
Confidence            444433

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]

Probab=94.37  E-value=5.4  Score=38.77  Aligned_cols=195  Identities=14%  Similarity=0.150  Sum_probs=103.1

Q ss_pred             ccccHHHHHHHHhCcchHHH---HHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhc-----CCC-----CchHHHHH--H
Q 019330           93 RHIRFRELAADVLGSGWMFY---FVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-----PNG-----SLKLYEFI--A  157 (342)
Q Consensus        93 ~~~sy~~l~~~~~G~~~g~~---~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-----~~~-----~~~~~~~~--~  157 (342)
                      .+.+|+.+.+..||- +|..   +......+.-+|+.   .-..+.+++.++....     ++.     ..+...++  +
T Consensus       101 ~gIpFpv~~RaSFGi-~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~  176 (497)
T COG1953         101 YGIPFPVLSRASFGI-YGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFF  176 (497)
T ss_pred             cCCCchHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHH
Confidence            457999999999988 4543   34444444455543   2334444544443322     121     22333333  2


Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCCCCcc-ccCcchhhHhhHHHHHHHHHHHH-
Q 019330          158 MVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-  235 (342)
Q Consensus       158 i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~fsf-  235 (342)
                      ++-++.++.-+ +..++++++-..+-.++...+.-+++....+.-... +..+.+ -........+.+..++...+-.| 
T Consensus       177 ifW~l~~l~~~-~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~-~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~A  254 (497)
T COG1953         177 IFWVLQLLVLF-KGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSS-ILGELPAGTVSGSNSSWAFLAGIAAWVGFWA  254 (497)
T ss_pred             HHHHHHHHHHh-cCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcC-ccccCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence            23344444444 458888887666666554444433333332221100 001111 01111223455666665555555 


Q ss_pred             -hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHHHH----hhHhhhccCCCC--chhhhccCCC
Q 019330          236 -GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFYSA----AVSGYWAFGNES--NSNILKSLMP  295 (342)
Q Consensus       236 -~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~----g~~gy~~fg~~~--~~~il~~~~~  295 (342)
                       ..-|+|...+.-|+|++....  -.++.-+.+.++-++    +...+..||++.  +.++++++++
T Consensus       255 tl~lN~~DFsRfa~s~~~~~~g--q~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~  319 (497)
T COG1953         255 TLALNIPDFTRFAKSQKAQIWG--QLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLS  319 (497)
T ss_pred             HHhcCCchhhcccCChhhhhhc--cchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhcc
Confidence             778999988888776653222  334455555555444    445788999995  6788888885

>PRK10484 putative transporter; Provisional

Probab=94.21  E-value=6.4  Score=39.02  Aligned_cols=165  Identities=5%  Similarity=-0.110  Sum_probs=81.5

Q ss_pred             cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCccccc
Q 019330           18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIR   96 (342)
Q Consensus        18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~s   96 (342)
                      +.++.+.-.|+-+++-..+.+..+.+++ ..++.|....+.|+.... .....++........+..-.++   .  +..|
T Consensus        29 s~~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r---~--~~~T  102 (523)
T PRK10484         29 SSDGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLK---S--GITT  102 (523)
T ss_pred             CchhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHh---c--CCcc
Confidence            3445556677778887777777776655 677888877777865311 1111111111122222222222   2  3359


Q ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHh-hHHHHHHhhhhhHHHHhhhh-cCCCCchHHHHH--HHHHHHHHHHhcCCCC
Q 019330           97 FRELAADVLGSGWMFYFVIFIQTAINTG-VGIGAILLAGECLQIMYSDL-YPNGSLKLYEFI--AMVTVVMIVLSQLPTF  172 (342)
Q Consensus        97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g-~~~~y~i~~~~~l~~l~~~~-~~~~~~~~~~~~--~i~~~i~~pl~~~~~l  172 (342)
                      .+|.-++-||++. +.+......+.... .+...+...+..+++++... .-+-......+.  ++.+++..--+..-=+
T Consensus       103 ~~e~l~~Ryg~~~-~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl  181 (523)
T PRK10484        103 IPDFLEERYDKTT-RRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGL  181 (523)
T ss_pred             HHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            9999999999964 34443333322222 22222223334444433210 001111111121  1223444555666778


Q ss_pred             cchhHHHHHHHHHHHHH
Q 019330          173 HSLRHINLVSLLLSLGY  189 (342)
Q Consensus       173 ~~l~~~s~~~~~~~~~~  189 (342)
                      +...++-.+-.+.++..
T Consensus       182 ~aV~~TD~iQ~vim~i~  198 (523)
T PRK10484        182 KAVAVSDTINGIGLLIG  198 (523)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888877776544433

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=93.72  E-value=7.5  Score=38.12  Aligned_cols=160  Identities=9%  Similarity=0.096  Sum_probs=85.7

Q ss_pred             ccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHH
Q 019330           21 AAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRE   99 (342)
Q Consensus        21 ~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~   99 (342)
                      +.+.-.|+-+++...+.+..+.+++ ..++.|....+.|+.. ........+........+.+-.+...+.+.+..|.+|
T Consensus        30 df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e  108 (487)
T TIGR02121        30 DYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPD  108 (487)
T ss_pred             HHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHH
Confidence            3445566667777777777776664 5677887777788752 2222111111222223333322211000123458999


Q ss_pred             HHHHHhCcc--hHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhH
Q 019330          100 LAADVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRH  177 (342)
Q Consensus       100 l~~~~~G~~--~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~  177 (342)
                      .-++=||++  .-+.+..+...+....-...-+...+..++.+++       .+....+++..++..--+...-++...+
T Consensus       109 ~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-------i~~~~~iii~~~i~~~Yt~~GGl~av~~  181 (487)
T TIGR02121       109 FFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-------LDYKTGLLIGALIIVIYTFFGGFLAVSW  181 (487)
T ss_pred             HHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            999999963  2223334333333333444445556666666653       2233334455566666677777787777


Q ss_pred             HHHHHHHHHHH
Q 019330          178 INLVSLLLSLG  188 (342)
Q Consensus       178 ~s~~~~~~~~~  188 (342)
                      +..+-.+..+.
T Consensus       182 TD~iQ~~i~~~  192 (487)
T TIGR02121       182 TDFVQGLLMFF  192 (487)
T ss_pred             HHHHHHHHHHH
Confidence            77776654433

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=93.68  E-value=1.6  Score=41.25  Aligned_cols=120  Identities=11%  Similarity=0.117  Sum_probs=82.4

Q ss_pred             HHHHhhChhHHHHHHHHHHHHHHHHHHHhhhcccc-ccccCcccccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHH
Q 019330           52 YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-CEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAI  130 (342)
Q Consensus        52 ~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~-~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~  130 (342)
                      ...-.+|++.++.+-++...+.+..     ...++ .+..+..-.=..+..++.||+ .|+++..+++.+.|+-+++.-+
T Consensus       224 ~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi  297 (431)
T COG1114         224 KYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLI  297 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHH
Confidence            3344577776666655554444443     11111 010111112467789999999 8999999999999999999999


Q ss_pred             HhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330          131 LLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       131 i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      ..++|.++++.+      ..+...|..+++++-+-++... ++++-..|.--+.
T Consensus       298 ~a~aefF~~~~p------~~SY~~~v~if~i~sflvan~G-L~~Ii~isvPvL~  344 (431)
T COG1114         298 VACAEFFSKLVP------KLSYKTWVIIFTLISFLVANLG-LEQIIKISVPVLT  344 (431)
T ss_pred             HHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Confidence            999999999986      4677888888888888777773 5555555554443

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=91.19  E-value=14  Score=35.04  Aligned_cols=67  Identities=15%  Similarity=0.143  Sum_probs=38.7

Q ss_pred             HHHHhhhhhhhhchHHHHHH-h--hChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHhCcchHHH
Q 019330           36 FHLTTAIVGPTILTLPYVFR-G--LGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFY  112 (342)
Q Consensus        36 ~~l~~~~iG~GiL~lP~~f~-~--~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~  112 (342)
                      +.+..-.+|+|.|-.|-... +  ..|..+.+..++.+...-.-...   +..   +.+ .  +|.++.++ +||+.+..
T Consensus         2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~---~~g-G--~~~~l~~~-~g~~f~~l   71 (378)
T TIGR00796         2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALA---LVG-G--GYDSLSAR-IGKVFGIL   71 (378)
T ss_pred             hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eee---ecC-C--CHHHHHHH-hChHHHHH
Confidence            34566789999999996543 2  34555555555555544433322   111   122 2  79999887 47756643

transmembrane helical spanners.

>COG4147 DhlC Predicted symporter [General function prediction only]

Probab=90.98  E-value=16  Score=35.40  Aligned_cols=221  Identities=16%  Similarity=0.170  Sum_probs=119.4

Q ss_pred             hhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHh--hhccccccccCcccccHHHHHHHHhCcchHHHHHHHHHHHHH
Q 019330           45 PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLM--SKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAIN  122 (342)
Q Consensus        45 ~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll--~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~  122 (342)
                      ++.|.++....-.|+= |..-  .+++..-|....+  .+-.|+   -++  .|++|....=++.+.-|++..+.-++-.
T Consensus        60 ASflGiag~I~~~GYd-G~~Y--~iG~~~Gy~i~~fL~A~~LRk---~Gk--yT~aD~~a~Ry~~~~~R~~aa~~ti~vs  131 (529)
T COG4147          60 ASFLGIAGLIFISGYD-GLIY--SIGWTGGYPILLFLIAEYLRK---LGK--YTFADFIADRYKSNPARLLAAIGTIIVS  131 (529)
T ss_pred             HhhhchhHhhhhcccc-hHHH--HHHHHHHHHHHHHHHHHHHHh---cCC--cchHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            4566667666666654 2222  2344444444333  333343   333  4899987777766667787777776667


Q ss_pred             HhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH-HHhhhhhhcc-
Q 019330          123 TGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYS-FLVVGACINA-  200 (342)
Q Consensus       123 ~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~-~~~i~~~i~~-  200 (342)
                      +.-.+.-++..+..+..+++.       ....-+++..+++.--....-++...|+..+--+..+... +..+.....- 
T Consensus       132 ~~YliaQmvGaG~li~~l~gv-------~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~  204 (529)
T COG4147         132 FLYLIAQMVGAGLLISLLLGV-------PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLG  204 (529)
T ss_pred             HHHHHHHHHhhHHHHHHHhCC-------CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            777777788888888887752       2222234555666777778888888888776554332222 2111111110 


Q ss_pred             CcC--------CCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcC-CccccchhhHHHHHHHHHHHHH
Q 019330          201 GFS--------KNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLA-PPATGKMVKGLLMCYSVIFVTF  270 (342)
Q Consensus       201 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~-~p~~~~~~~~~~~~~~~~~~~y  270 (342)
                      +..        +.++..|......+.....+-.+.++...--. +..-+|.+.-..- -|+-|.-+|.+.++..+...+|
T Consensus       205 g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fY  284 (529)
T COG4147         205 GNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFY  284 (529)
T ss_pred             CCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence            000        00111110000001111122333333333223 6777776543322 3555556789999999999999


Q ss_pred             HHHhhHhhhc
Q 019330          271 YSAAVSGYWA  280 (342)
Q Consensus       271 ~~~g~~gy~~  280 (342)
                      +..-..|+.+
T Consensus       285 i~~~~ig~~A  294 (529)
T COG4147         285 ILTPIIGAGA  294 (529)
T ss_pred             HHHHHHHHHH
Confidence            9776666553

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=90.40  E-value=4.9  Score=38.66  Aligned_cols=78  Identities=13%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchh
Q 019330           97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR  176 (342)
Q Consensus        97 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~  176 (342)
                      .....++.+|+ +|+++..+.+.+.|+-++++-....++.+++.++       .+.+.|.++.+++.++++... ++++-
T Consensus       267 l~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-------isY~~~v~i~~l~S~~lSn~G-~~~II  337 (439)
T PRK15433        267 LHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-------LSYRTLVFILGGFSMVVSNLG-LSQLI  337 (439)
T ss_pred             HHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence            45668889999 8999999999999999999999999999998863       466777788888888888874 55554


Q ss_pred             HHHHHHH
Q 019330          177 HINLVSL  183 (342)
Q Consensus       177 ~~s~~~~  183 (342)
                      ..+.--+
T Consensus       338 ~~s~PiL  344 (439)
T PRK15433        338 QISVPVL  344 (439)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=89.92  E-value=19  Score=34.69  Aligned_cols=285  Identities=11%  Similarity=0.067  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHhhhhhhhhchHHHHHH---hhChhHHHHHHHHHHHHHH-HHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           30 EWWHAGFHLTTAIVGPTILTLPYVFR---GLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~lP~~f~---~~G~~~g~~~l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      ..+..-+.+..-..|+|=|=.|-...   ..-|..+.+..++.+..-- -+...+.+.        ..  +++++++++ 
T Consensus         9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~--------~g--~~~~l~~rv-   77 (439)
T PRK15433          9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV--------GG--GVDSLSTPI-   77 (439)
T ss_pred             HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--------CC--CHHHHhhhc-
Confidence            56778899999999999999996543   3446666666655554222 122112222        12  688888875 


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~  185 (342)
                      ||+.+..+..+  ...+.|-+.+-=-..+...+--...+.+++......+.+++..+.+-+++-|+    +.+-.+|-+.
T Consensus        78 ~~~f~~~f~~~--i~l~IGP~~aiPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~----klvd~iGK~L  151 (439)
T PRK15433         78 GKVAGVLLATV--CYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPG----KLLDTVGNFL  151 (439)
T ss_pred             chHHHHHHHHH--HHHHHhhccccCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChh----hHHHHhHHHH
Confidence            45445332211  11122211100000111111001111122112222344555556666665543    3344444433


Q ss_pred             H---HHHHHHhhhhhhccCcCCC-CCCCCccccC--cchhhHhhHHHHHHHHHHHHhhccHHHHhh-hcCCcccc-c-hh
Q 019330          186 S---LGYSFLVVGACINAGFSKN-APPKDYSLES--SKSARIFSAFTSISIIAAIFGNGILPEIQA-TLAPPATG-K-MV  256 (342)
Q Consensus       186 ~---~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~i~~fsf~~~~~~~i~~-~m~~p~~~-~-~~  256 (342)
                      +   +....++++.++.+...+. .+..++.-.+  ..-.+=.+...+++.+.|+-  ..+-.+.+ ..+++++. | ..
T Consensus       152 TP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~--iii~~i~~~G~~~~~~~~k~t~  229 (439)
T PRK15433        152 APLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGI--VIVNAARSRGVTEARLLTRYTV  229 (439)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHH
Confidence            1   2222234444454433221 1112221110  00000125556677777774  33333333 24333331 1 23


Q ss_pred             hHHHHHHHHHHHHHHHHhhHhhhc---cCCC-CchhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhh
Q 019330          257 KGLLMCYSVIFVTFYSAAVSGYWA---FGNE-SNSNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSL  332 (342)
Q Consensus       257 ~~~~~~~~~~~~~y~~~g~~gy~~---fg~~-~~~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~  332 (342)
                      ++-.++...-.++|...+..|-..   +++. ..+.++...-...    -.++...+--+.+.+.++++---.+..+-+.
T Consensus       230 ~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~----~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~  305 (439)
T PRK15433        230 WAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHT----FGGGGSFLLAALIFIACLVTAVGLTCACAEF  305 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566677888877777644   2222 2233333332110    1223333444455566666666666666666


Q ss_pred             HHHHH
Q 019330          333 QLFQF  337 (342)
Q Consensus       333 ~~~~~  337 (342)
                      +++.+
T Consensus       306 f~~~~  310 (439)
T PRK15433        306 FAQYV  310 (439)
T ss_pred             HHhhc
Confidence            66543

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2

Probab=87.24  E-value=26  Score=32.80  Aligned_cols=79  Identities=20%  Similarity=0.385  Sum_probs=47.3

Q ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhc--CCCCc
Q 019330           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ--LPTFH  173 (342)
Q Consensus        96 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~  173 (342)
                      +..|..++-+||+++ ++.-+...+.+......-+...+.-++.++.       .....+.++.++..+-+.+  .++.+
T Consensus        43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-------~~~~~~~~~~~~~~~~ll~~~~~~y~  114 (358)
T PF01566_consen   43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLFG-------IPLWIWVLLVAVIAILLLWLSSGGYR  114 (358)
T ss_pred             ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCcHHHHHHHHHHHHHHHHHHhccch
Confidence            788888888888655 5555666666666666666666666666542       2334444444444444444  56666


Q ss_pred             chhHHHHHH
Q 019330          174 SLRHINLVS  182 (342)
Q Consensus       174 ~l~~~s~~~  182 (342)
                      .+..+...-
T Consensus       115 ~~E~~~~~l  123 (358)
T PF01566_consen  115 RLERILKVL  123 (358)
T ss_pred             HHHHHHHHH
Confidence            666654433

The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=83.58  E-value=49  Score=32.79  Aligned_cols=107  Identities=10%  Similarity=0.033  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHH--hhccHHHHhhhcCCccccchhhHHHHHHHHHHHHHH-----HHhhHhhhccCC---------CCc
Q 019330          223 SAFTSISIIAAIF--GNGILPEIQATLAPPATGKMVKGLLMCYSVIFVTFY-----SAAVSGYWAFGN---------ESN  286 (342)
Q Consensus       223 ~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~y~-----~~g~~gy~~fg~---------~~~  286 (342)
                      -...|++-..|+.  +.+.+...-+.+|+.++  ..|...........+-+     .+++.|+.+...         +-+
T Consensus       250 vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n--~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~  327 (523)
T PF00209_consen  250 VWIAALGQVFFSLSIGFGIMITYGSYNKFKNN--IFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGP  327 (523)
T ss_dssp             HHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS---SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CH
T ss_pred             HHHHHHHHHhhccCCCcceEEEEcCcCCCCcc--ccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCC
Confidence            4578999999999  88888877777665443  44433333333333333     233444443311         111


Q ss_pred             -------hhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhhhhHHHHHh
Q 019330          287 -------SNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHSSLQLFQFL  338 (342)
Q Consensus       287 -------~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~~~~~~~~~  338 (342)
                             +.++..+|       .++....+-.++..+.-+.|.-.+..+....+++++-
T Consensus       328 ~L~Fi~~P~~~~~~p-------~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~  379 (523)
T PF00209_consen  328 GLAFIVLPEAFSQMP-------GGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFP  379 (523)
T ss_dssp             HHHHTHHHHHHTTST-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             CchHHHHHHHHHcCC-------CCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecCc
Confidence                   13344443       2444455555556666667777777787777777554

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=83.54  E-value=44  Score=32.21  Aligned_cols=282  Identities=16%  Similarity=0.178  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHhhhhhhhhchHHHHHH---hhChhHHHHHHHHHHHHHHHHH-HHhhhccccccccCcccccHHHHHHHHh
Q 019330           30 EWWHAGFHLTTAIVGPTILTLPYVFR---GLGWGLGFTCLTVMGFVTFYSY-YLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~lP~~f~---~~G~~~g~~~l~~~~~~~~~s~-~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      ..+..-+.+.....|+|=|=.|-...   ..-|.++.+..++.+..--.-. ..+.+.        ..  +++++++++ 
T Consensus         4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~--------~~--~~~~l~~~v-   72 (427)
T PF05525_consen    4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS--------GG--GIEDLASRV-   72 (427)
T ss_pred             hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--------CC--CHHHHhccc-
Confidence            34667788899999999999996543   4557777777777665433222 111111        22  688888875 


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcC-CCCchHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP-NGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      ||+.+..+..+.  ..+.|-..+-=-..+...+--...+.+ +.......+.+++..+.+-+++-|+    +.+-.+|-+
T Consensus        73 ~~~f~~if~~~i--~l~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~----kivd~iGk~  146 (427)
T PF05525_consen   73 GPKFALIFTILI--YLSIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPS----KIVDRIGKF  146 (427)
T ss_pred             CcHHHHHHHHHH--HHHHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhchh----hHHHHHHHH
Confidence            454553332111  111111110000111111111111111 2334444455556566666666543    333334433


Q ss_pred             H---HHHHHHHhhhhhhccCcCCCC-CCCCccccCcchhhH---hhHHHHHHHHHHHHhhccHHHHhhhc-CCcccc-c-
Q 019330          185 L---SLGYSFLVVGACINAGFSKNA-PPKDYSLESSKSARI---FSAFTSISIIAAIFGNGILPEIQATL-APPATG-K-  254 (342)
Q Consensus       185 ~---~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~i~~fsf~~~~~~~i~~~m-~~p~~~-~-  254 (342)
                      .   .+....++++.++.+...+.. +..++.-.+. ...+   .+...+++.+.|+  ...+-.+.+.= +++++. | 
T Consensus       147 LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f-~~Gf~eGY~TMD~laal~Fg--~iIi~~i~~~g~~~~k~~~~~  223 (427)
T PF05525_consen  147 LTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPF-FKGFLEGYQTMDALAALAFG--IIIINAIRQKGYKDKKEIKKY  223 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHH-HHHHHHHHhhhhHHHHHHHH--HHHHHHHHHhCCCCHHHHHHH
Confidence            2   222333444455554432211 1111111000 0011   1344556666666  22333332221 112221 1 


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhhhccC---CCCc-hhhhccCCCCCCCCCChhHHHHHHHHHHHHHHhhhhhhcchhhh
Q 019330          255 MVKGLLMCYSVIFVTFYSAAVSGYWAFG---NESN-SNILKSLMPDNGPSLAPTSVIGLAVVFVLLQLFAIGLVSPQFHS  330 (342)
Q Consensus       255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg---~~~~-~~il~~~~~~~~~~~~~~~~~~i~~~~~~i~l~~s~pl~~~p~~  330 (342)
                      ..++-.++...-.++|...+..|.-.-+   +..+ +.++......- .   .+.-..+.-+.+.++++++---.+..+-
T Consensus       224 ~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~-~---G~~G~~ll~iiv~lACLTTaIGL~~a~a  299 (427)
T PF05525_consen  224 TIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHL-F---GSAGQILLGIIVFLACLTTAIGLISACA  299 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHH-c---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2344455555667778777777666543   2333 34444443210 0   1112233334555666666555555666


Q ss_pred             hhHHH
Q 019330          331 SLQLF  335 (342)
Q Consensus       331 ~~~~~  335 (342)
                      +.+++
T Consensus       300 ~yf~~  304 (427)
T PF05525_consen  300 EYFSE  304 (427)
T ss_pred             HHHHH
Confidence            66665

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=81.74  E-value=51  Score=31.66  Aligned_cols=49  Identities=12%  Similarity=0.043  Sum_probs=37.0

Q ss_pred             ccCChHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFY   75 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~~~l~~~~~~~~~   75 (342)
                      +++-|-+|++..-+.+.+|+| |.....|.. .|-..++++|-+.+++..-
T Consensus        16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~-~GGPGAiFWMWi~a~~Gma   65 (416)
T PF01235_consen   16 EGGISPFQALCTALAGTVGTGNIAGVATAIA-IGGPGAIFWMWISALLGMA   65 (416)
T ss_pred             CCCcChHHHHHHHHHhccCcchHHHHHHHHH-hhchhHHHHHHHHHHHHHH
Confidence            445588999999999999997 555666775 5666688888887776543

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.39
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.18
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.87
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	98.6
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	96.2
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	94.76
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	93.18

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.39  E-value=2.5e-11  Score=115.64  Aligned_cols=245  Identities=12%  Similarity=-0.008  Sum_probs=156.8

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHh
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~~  105 (342)
                      +|+-+.++.....+++++|+|++.+|....+.|.. +.+..++.++........+.|...+.|+.+    +..+..++.+
T Consensus         7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~~   81 (445)
T 3l1l_A            7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPG----GSYAYARRCF   81 (445)
T ss_dssp             CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTT----THHHHHHHHS
T ss_pred             CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CchhhHHhHc
Confidence            56668899999999999999999999998888864 777777788888888888888776654332    5666788999


Q ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHH-HHHHHHHHHhcCCCCcchhHHHHHHHH
Q 019330          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIA-MVTVVMIVLSQLPTFHSLRHINLVSLL  184 (342)
Q Consensus       106 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (342)
                      ||.+| +++.+...+........+....++.++..++...    .....+.+ +..++.+-....+..+....++.+...
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~  156 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV  156 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            99666 7777777777777777777777776665544211    11111211 111222222223345555555544444


Q ss_pred             HHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHHH
Q 019330          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMCY  263 (342)
Q Consensus       185 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~~  263 (342)
                      ..+...+++++..+.....++. ..  ...+.....+..+..++....|+| +........+|+|+|+| +.+|++..+.
T Consensus       157 ~~i~~~~~~~i~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r-~ip~a~~~~~  232 (445)
T 3l1l_A          157 LALIPIVGIAVFGWFWFRGETY-MA--AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGV  232 (445)
T ss_dssp             HHHHHHHHHHHTTSTTCCCCCC-CC--C-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhhc-cc--ccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc-cccHHHHHHH
Confidence            3333322222222222211110 01  111111112457889999999999 99999999999999975 5899999999


Q ss_pred             HHHHHHHHHHhhHhhhccCCC
Q 019330          264 SVIFVTFYSAAVSGYWAFGNE  284 (342)
Q Consensus       264 ~~~~~~y~~~g~~gy~~fg~~  284 (342)
                      .++.++|+...+......+.+
T Consensus       233 ~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          233 LIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCHH
Confidence            999999999888766666543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.18  E-value=2.3e-09  Score=101.94  Aligned_cols=241  Identities=9%  Similarity=0.038  Sum_probs=153.2

Q ss_pred             ccCChHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHH
Q 019330           26 ESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (342)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~~  104 (342)
                      +|+-+.++.....+++++|+|++..|.. .+..|. .+.+..++.+++.......+.|...+.|+.+    ...+..++.
T Consensus         5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G----g~y~~~~~~   79 (444)
T 3gia_A            5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA----GPIAFIHKA   79 (444)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT----THHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----cHHHhHHHH
Confidence            5666889999999999999999998754 455565 5777777778888888888888877654433    466778888


Q ss_pred             hCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHH-HHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 019330          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYE-FIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (342)
Q Consensus       105 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~~~  183 (342)
                      +|+++....+.+...+........+....++.+..+++.    ....... ...+..++.+-....+..+....++.+..
T Consensus        80 ~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~  155 (444)
T 3gia_A           80 IGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA----PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIV  155 (444)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             hCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            999631123345555556666777777777877776542    1111111 11111122222223334555555554444


Q ss_pred             HHHHHHHHHhhhhhhccCcCCCCCCCCccccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccchhhHHHHH
Q 019330          184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGKMVKGLLMC  262 (342)
Q Consensus       184 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~~~~~~~~~  262 (342)
                      ...+...++.++..+.....+     +... ...+..+.+++.++....++| +........+|+|+|+| +.+|++..+
T Consensus       156 ~~~i~~~~~~ii~~~~~~~~~-----~~~~-~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r-~ip~ai~~~  228 (444)
T 3gia_A          156 LVKLLILGLFIFAGLITIHPS-----YVIP-DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK-NVPRAIFIS  228 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHCCGG-----GTSC-CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcChh-----hcCC-CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc-chhHHHHHH
Confidence            433333322222222222111     1111 112234557888899999999 99999999999999975 589999999


Q ss_pred             HHHHHHHHHHHhhHhhhccC
Q 019330          263 YSVIFVTFYSAAVSGYWAFG  282 (342)
Q Consensus       263 ~~~~~~~y~~~g~~gy~~fg  282 (342)
                      ..++.++|....+......+
T Consensus       229 ~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          229 ILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            99999999988776655544

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.87  E-value=2e-07  Score=90.13  Aligned_cols=245  Identities=10%  Similarity=0.049  Sum_probs=137.5

Q ss_pred             eccCChHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHhhhccc--cccccCcccccHHHHH
Q 019330           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLD--HCEKAGRRHIRFRELA  101 (342)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~--~~~~~~~~~~sy~~l~  101 (342)
                      .+|+=+.++.....++.++|  +.++|. ....|.. +++..++.+++. ......+.|...  ..| ++    .....+
T Consensus         9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G----G~y~~~   79 (511)
T 4djk_A            9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG----GVFAWV   79 (511)
T ss_dssp             ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC--------CHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC----ChhhhH
Confidence            46677889999999999986  567776 4566654 333333333333 235666677766  554 33    566778


Q ss_pred             HHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHh--hhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY--SDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (342)
Q Consensus       102 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~--~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s  179 (342)
                      ++.+|+++| +++.+...+.......++....++.++.++  +.+. ...+......++..++..- ...+..+....+.
T Consensus        80 ~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~-in~~g~~~~~~~~  156 (511)
T 4djk_A           80 SNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN-EDPITKTIAALIILWALAL-TQFGGTKYTARIA  156 (511)
T ss_dssp             HHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT-SCSSHHHHHHHHHHHHHHH-HHHTCSSSHHHHT
T ss_pred             HhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cCcHHHHHHHHHHHHHHHH-HHHhChHHHHHHH
Confidence            888999766 777777777776666666666666665442  2111 1122222222222222222 2333455555555


Q ss_pred             HHHHHHH-HHHHHHhhhhhhccCcCCCCCC--CCc-cccCcchhhHhhHHHHHHHHHHHH-hhccHHHHhhhcCCccccc
Q 019330          180 LVSLLLS-LGYSFLVVGACINAGFSKNAPP--KDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQATLAPPATGK  254 (342)
Q Consensus       180 ~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~i~~fsf-~~~~~~~i~~~m~~p~~~~  254 (342)
                      .+..... +...++++...+......+...  .+. ...+.  ....+.+.++...+++| +........+|+|+|+| +
T Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k-~  233 (511)
T 4djk_A          157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPD--FSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGR-D  233 (511)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCC--TTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTT-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCC--cccchHHHHHHHHHHHHhhHHHHHHHHHhccCccc-c
Confidence            4443221 1111111111111110001000  000 11111  11123445677889999 99999999999999986 5


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhhhccCCC
Q 019330          255 MVKGLLMCYSVIFVTFYSAAVSGYWAFGNE  284 (342)
Q Consensus       255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~  284 (342)
                      ++|++..+..++.++|++..+......+++
T Consensus       234 ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            899999999999999999888777766654

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=98.60  E-value=7e-06  Score=79.22  Aligned_cols=273  Identities=10%  Similarity=-0.003  Sum_probs=146.4

Q ss_pred             CC-CCCCCCchhhhcccccccccceeccCChHHHHHHHHHhhhhhhhhchHHHHHHh-hChhHHHHHHHHHHHHHHHHHH
Q 019330            1 MA-QPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRG-LGWGLGFTCLTVMGFVTFYSYY   78 (342)
Q Consensus         1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~~f~~-~G~~~g~~~l~~~~~~~~~s~~   78 (342)
                      |+ +|.++++.++   ++|...++..+|+.++++-+..-+...++.+...+...+.. .++..+++..++..++...-..
T Consensus         1 m~~~~~~~~~~~e---~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~   77 (501)
T 2jln_A            1 MNSTPIEEARSLL---NPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLF   77 (501)
T ss_dssp             -------CCCBCC---CSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccc---cCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence            54 3455555443   55555555556777777666666666666666655544433 3445555555554444443333


Q ss_pred             HhhhccccccccCcccccHHHHHHHHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHH
Q 019330           79 LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM  158 (342)
Q Consensus        79 ll~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i  158 (342)
                      ++...-.+   .   ..++.++.+..||+ +|..+..+...+.++|-...-....++.++.++....+  ......+.++
T Consensus        78 l~~~~G~~---~---Gl~~~v~~R~~FG~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g--~~~~~v~~~i  148 (501)
T 2jln_A           78 FTQSAAIR---W---GINFTVAARMPFGI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG--FTNLPLWIVI  148 (501)
T ss_dssp             HHTHHHHH---H---CCCHHHHTTTTSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred             HHhHHHhh---c---CCChhhhhHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHH
Confidence            33333221   2   34799999999999 58889999999999999988888999999888653221  1112334556


Q ss_pred             HHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHhhhhhhcc-CcC-CCCCCCCccccCcchhhHhhHHHHHHHHHHHH-
Q 019330          159 VTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINA-GFS-KNAPPKDYSLESSKSARIFSAFTSISIIAAIF-  235 (342)
Q Consensus       159 ~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fsf-  235 (342)
                      +.++.++..+. -.+.++.+..+.....+...+.+.+..+.+ +.+ ...  .+  ..+.  ...+.+..++...+-.+ 
T Consensus       149 ~~~l~~~~~~~-G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~--~~--~~~~--~~~~~f~~ai~~~~~~~~  221 (501)
T 2jln_A          149 FGAIQVVTTFY-GITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEV--MS--MGGE--NPGMPFSTAIMIFVGGWI  221 (501)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH--TT--CCCS--SCCSCHHHHHHHHHTTTH
T ss_pred             HHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh--hc--cCCc--cchHHHHHHHHHHHHHHH
Confidence            66777777766 477777777666554433333333322221 110 000  00  0000  11224555554432222 


Q ss_pred             -hhccHHHHhhhcCCccc---------c-chhhHHHHHHHHHHHHHHHHhhHhhhccCCCCchhhhcc
Q 019330          236 -GNGILPEIQATLAPPAT---------G-KMVKGLLMCYSVIFVTFYSAAVSGYWAFGNESNSNILKS  292 (342)
Q Consensus       236 -~~~~~~~i~~~m~~p~~---------~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~  292 (342)
                       ...+.++..+.+|++++         + |......++..+..++...+|...-...+...+..++..
T Consensus       222 ~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~  289 (501)
T 2jln_A          222 AVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITE  289 (501)
T ss_dssp             HHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred             HHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence             55788999999987765         1 122223344555555555555543333333333444443

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=96.20  E-value=0.95  Score=43.53  Aligned_cols=159  Identities=9%  Similarity=0.083  Sum_probs=85.3

Q ss_pred             cccccceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCccccc
Q 019330           18 DAGAAFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIR   96 (342)
Q Consensus        18 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~s   96 (342)
                      +.++.+.-.|+-+++...+.+..+.+++ ..+++|....+.|+......... ++........+..-.++   .  +..|
T Consensus        11 ~~~dy~laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~---~--~~~T   84 (530)
T 3dh4_A           11 XXXXXXXAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---K--GIYT   84 (530)
T ss_dssp             HHHHHHCCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH---T--TCCS
T ss_pred             cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH---c--CCcc
Confidence            3344445566667777777777776665 78899988888887532211111 11011112223332222   2  2359


Q ss_pred             HHHHHHHHhCcchHHHHHHHHHHH-HHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcch
Q 019330           97 FRELAADVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (342)
Q Consensus        97 y~~l~~~~~G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l  175 (342)
                      .+|.-++-||++ .+.+..+...+ +.+..+.+-+...+..++.++.       .+....+++.++++.--+...-++..
T Consensus        85 ~~e~l~~Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-------i~~~~~i~i~~~i~~~Yt~~GGl~aV  156 (530)
T 3dh4_A           85 IPEFVEKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG-------IPLMYSILGLALFALVYSIYGGLSAV  156 (530)
T ss_dssp             HHHHHHHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHTTC------C
T ss_pred             HHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhcchHHH
Confidence            999999999995 45555544332 2222233333444555665543       33344445566666777788888888


Q ss_pred             hHHHHHHHHHHHHHH
Q 019330          176 RHINLVSLLLSLGYS  190 (342)
Q Consensus       176 ~~~s~~~~~~~~~~~  190 (342)
                      .++..+-.+.++...
T Consensus       157 ~~TD~iQ~~im~~g~  171 (530)
T 3dh4_A          157 VWTDVIQVFFLVLGG  171 (530)
T ss_dssp             CSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777766554433

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=94.76  E-value=3.3  Score=40.31  Aligned_cols=153  Identities=10%  Similarity=0.123  Sum_probs=78.1

Q ss_pred             cceeccCChHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHH
Q 019330           22 AFVLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFREL  100 (342)
Q Consensus        22 ~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l  100 (342)
                      .+.-.|+-+++.....+..+.+++ ..++.|....+.|+......... ++........+..-.++   .+  ..|.+|.
T Consensus        44 y~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r---~~--~~T~~e~  117 (593)
T 2xq2_A           44 YFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---KG--IYTIPEF  117 (593)
T ss_dssp             -------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH---TT--CCSHHHH
T ss_pred             HhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh---CC--CCCcHHH
Confidence            334456667777777777666655 66789988888887422111100 00001111122222222   33  3499999


Q ss_pred             HHHHhCcchHHHHHHHHHH-HHHHhhHHHHHHhhhhhHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 019330          101 AADVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (342)
Q Consensus       101 ~~~~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s  179 (342)
                      -++=||++ .+.+..+... ...+.....-+...+..++.++.       ++....+++.++++.-.+...-++...++-
T Consensus       118 l~~Rfg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-------i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD  189 (593)
T 2xq2_A          118 VEKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG-------IPLMYSILGLALFALVYSIYGGLSAVVWTD  189 (593)
T ss_dssp             HHHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHTTC---CCHHH
T ss_pred             HHHHccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            99999985 4455544333 22333333334445666666653       233334455566667777777788887777


Q ss_pred             HHHHHHHHH
Q 019330          180 LVSLLLSLG  188 (342)
Q Consensus       180 ~~~~~~~~~  188 (342)
                      .+-.+..+.
T Consensus       190 ~iQ~iiml~  198 (593)
T 2xq2_A          190 VIQVFFLVL  198 (593)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666654443

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=93.18  E-value=6.1  Score=37.72  Aligned_cols=216  Identities=10%  Similarity=0.023  Sum_probs=106.3

Q ss_pred             ChHHHHHHHHHhhhhhhh-hchHHHHHHhhCh----hHHHHHHHHHHHHHHHHHHHhhhccc-cccccCcccccHHHHHH
Q 019330           29 GEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGW----GLGFTCLTVMGFVTFYSYYLMSKVLD-HCEKAGRRHIRFRELAA  102 (342)
Q Consensus        29 ~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~----~~g~~~l~~~~~~~~~s~~ll~~~~~-~~~~~~~~~~sy~~l~~  102 (342)
                      +|..+-.+..+.+.+|.| +--.||...+.|-    ++=++.+++.++--.+.=..+.|-.. +   .+ +  +-.+.-+
T Consensus         9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~---~r-~--~~i~a~~   82 (519)
T 2a65_A            9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ---GH-G--TTPAIFY   82 (519)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---TC-C--SHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhc---cC-C--CHHHHHH
Confidence            355777888899999998 8899999998884    34444444444444333333444111 1   11 1  2222333


Q ss_pred             HHhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhhhhcCC----C------------------------------
Q 019330          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN----G------------------------------  148 (342)
Q Consensus       103 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~------------------------------  148 (342)
                      ++.+++.. ..+.....+.++..++-|.++.+-.+..++..+..+    +                              
T Consensus        83 ~l~~~~~~-~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~  161 (519)
T 2a65_A           83 LLWRNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPI  161 (519)
T ss_dssp             HHSCSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCB
T ss_pred             HhcCCcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccc
Confidence            33222111 123344445555566666666665555444332111    0                              


Q ss_pred             -C--chHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHHHHhhhhhhccCcCC--CCCCCCccccCc-ch-hh
Q 019330          149 -S--LKLYEFIAMVTVVMIVLSQLPTF-HSLRHINLVSLLLSLGYSFLVVGACINAGFSK--NAPPKDYSLESS-KS-AR  220 (342)
Q Consensus       149 -~--~~~~~~~~i~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~-~~-~~  220 (342)
                       .  +....+. +...++.-++..|-+ +....++.+-...-+...++.+++++.-.-++  ....-++-+.++ +. .+
T Consensus       162 g~~~~~~~~~~-~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~  240 (519)
T 2a65_A          162 LKPSLFAYIVF-LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKD  240 (519)
T ss_dssp             CCCCHHHHHHH-HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTC
T ss_pred             cCccHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCC
Confidence             0  1111121 222333445666666 45666666655543443344444443311100  000000001110 00 11


Q ss_pred             HhhHHHHHHHHHHHH--hhccHHHHhhhcCCccc
Q 019330          221 IFSAFTSISIIAAIF--GNGILPEIQATLAPPAT  252 (342)
Q Consensus       221 ~~~~~~~~~i~~fsf--~~~~~~~i~~~m~~p~~  252 (342)
                      ......|.+-..||.  |...+...-+.+|+.++
T Consensus       241 ~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n  274 (519)
T 2a65_A          241 PGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQD  274 (519)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSC
T ss_pred             HHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcC
Confidence            235789999999999  88888887777765554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	90.28

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.28  E-value=5.9  Score=35.35  Aligned_cols=108  Identities=12%  Similarity=0.045  Sum_probs=63.7

Q ss_pred             ChHHHHHHHHHhhhhhhh-hchHHHHHHhhChh----HHHHHHHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHH
Q 019330           29 GEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWG----LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (342)
Q Consensus        29 ~s~~~a~~~l~~~~iG~G-iL~lP~~f~~~G~~----~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~sy~~l~~~  103 (342)
                      +|..+-.+..+...+|.| +--+||...+.|-.    +=.+++++.+.-..+-=..+.|..++   ...  ..+..+...
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~---g~i--~~~~~i~~~   79 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA---QGH--GTTPAIFYL   79 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TTC--CSHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC---Ccc--cHHHHHHHH
Confidence            355778888999999986 44589998776633    33344444444333333334444333   222  367777776


Q ss_pred             HhCcchHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHhh
Q 019330          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS  142 (342)
Q Consensus       104 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~l~~  142 (342)
                      ..+.+..| .+.....+.++..++-|.++.+-.+..+..
T Consensus        80 ~~~~~~~~-giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~  117 (509)
T d2a65a1          80 LWRNRFAK-ILGVFGLWIPLVVAIYYVYIESWTLGFAIK  117 (509)
T ss_dssp             HSCSHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcchh-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65544332 344455566677777788877776665443