Citrus Sinensis ID: 019342

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEEEDEEEEYDDYESEYSEDEEDERDTKKKVPAANGTVSKKGTNSELSGSDEE
cccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEEEEEccccccccccEEEEEEEEEEcccccccccccccccccccccccEEEEEEEccccEEEEEEEEccccccHHHHcccHHHHccccccccccccHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEEccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccc
ccEEEccccccccHHHHHHHHHHHHHHHHHcHHHcccccccccccccHHcccccccHHHHHHHHHcccccHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEEEEEEcccccccccEEEEEEEEEEEccccccccEEEcccccccccccEEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEEccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccc
maviprtaqghgwlrpavGVVELSQSIIQAvplssrkatggstegtapflqlphFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQvggfssteVQDVEMVLQMMPSLTVEVTcetegeegiqegdIVTIQAWVTLKRgngligalphapyypfhkeeNFWFLLADSVsnnvwfsqkvsfmdepAAITAASKAIEDtmegsgatvKETSAAVREAAEKVRSgsrlvmgkiqapaegnynltcyclcdswlgcdkrtnLKVKILKRtragtrggivseegpivedgaeeeeedeeeeyddyeseysedeederdtkkkvpaangtvskkgtnselsgsdee
maviprtaqghgwlrpAVGVVELSQSIIQAVPLSSRKATGGStegtapflqlphfTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETegeegiqegdiVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAekvrsgsrlvmGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKIlkrtragtrggivseegpivedgaeeeeedeeeeyddyeseysedeederdtkkkvpaangtvskkgtnselsgsdee
MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLtvevtcetegeegIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDGAeeeeedeeeeyddyeseysedeederdtkkkVPAANGTVSKKGTNSELSGSDEE
*********GHGWLRPAVGVVELSQSIIQAVP**************APFLQLPHFTEAVIKKIARKKVRTFQELRDMSL**RAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI*************************************LVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGT**********************************************************************
*AVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVT******************HAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMD**********************VKETSAAVR******************APAEGNYNLTCYCLCDSWLGCDKRTNLKVKILK****************************************************************************
MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPL**********EGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKET**************SRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIV***********************************VPAANGTV***************
MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKR***************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVPAANGTVSKKGTNSELSGSDEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
Q9VUV92142 Putative U5 small nuclear yes no 0.570 0.091 0.231 2e-13
Q55CI82237 Activating signal cointeg yes no 0.578 0.088 0.237 1e-11
Q9U2G02145 Putative U5 small nuclear yes no 0.555 0.088 0.254 4e-11
O756432136 U5 small nuclear ribonucl yes no 0.570 0.091 0.243 5e-11
P326392163 Pre-mRNA-splicing helicas yes no 0.593 0.093 0.206 5e-06
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 Back     alignment and function desciption
 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 60/255 (23%)

Query: 10   GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVR 69
             +GWL PAV  +EL+Q + QA+               +   QLPHF+  ++K+   KK+ 
Sbjct: 1936 SNGWLSPAVAAMELAQMVTQAM-----------WSKDSYLKQLPHFSPEIVKRCTEKKIE 1984

Query: 70   TFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 129
            T  ++ ++  +DR  LL      S  ++ DV       P+  +E+  E   ++ I  G  
Sbjct: 1985 TVFDIMELEDEDRTRLLQ----LSDLQMADVARFCNRYPN--IELNYEVVDKDRINSGS- 2037

Query: 130  VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 189
             T+   V L+R + + G +  AP++P  +EE +W ++ D  +N++   ++++   +    
Sbjct: 2038 -TVNVVVQLEREDEVTGPVI-APFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQK---- 2091

Query: 190  TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 249
                           A VK                         AP+ G ++ T Y + D
Sbjct: 2092 ---------------AKVKLDFV---------------------APSPGKHDYTLYYMSD 2115

Query: 250  SWLGCDKRTNLKVKI 264
            S+LGCD+     +++
Sbjct: 2116 SYLGCDQEYKFSIEV 2130
Putative RNA helicase involved in the second step of RNA splicing.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1 Back     alignment and function description
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 Back     alignment and function description
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 Back     alignment and function description
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
224079782 685 predicted protein [Populus trichocarpa] 0.964 0.481 0.830 1e-149
225464625 688 PREDICTED: translocation protein SEC63 h 1.0 0.497 0.797 1e-147
356556432 685 PREDICTED: translocation protein SEC63 h 1.0 0.499 0.758 1e-143
449485587 477 PREDICTED: putative U5 small nuclear rib 0.964 0.691 0.775 1e-141
449445973 685 PREDICTED: translocation protein SEC63 h 0.964 0.481 0.775 1e-141
356530479 685 PREDICTED: translocation protein SEC63 h 1.0 0.499 0.746 1e-141
255545152 682 heat shock protein binding protein, puta 0.994 0.498 0.801 1e-140
224135305 685 predicted protein [Populus trichocarpa] 0.961 0.480 0.834 1e-137
302143768 618 unnamed protein product [Vitis vinifera] 0.807 0.446 0.844 1e-137
357450181 685 Chaperone protein dnaJ [Medicago truncat 1.0 0.499 0.760 1e-134
>gi|224079782|ref|XP_002305942.1| predicted protein [Populus trichocarpa] gi|118481069|gb|ABK92488.1| unknown [Populus trichocarpa] gi|222848906|gb|EEE86453.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/331 (83%), Positives = 303/331 (91%), Gaps = 1/331 (0%)

Query: 1   MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVI 60
           MAVIPRT+QGHGWLRPA GVVELSQ IIQAVPLS+RKATGGSTEG APFLQLPHFTE+V+
Sbjct: 343 MAVIPRTSQGHGWLRPATGVVELSQCIIQAVPLSARKATGGSTEGIAPFLQLPHFTESVV 402

Query: 61  KKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEG 120
           KKIARKKVRTF++  DM+LQ+RAE+L QV GFSS EVQDVEMVL+MMPS+TVEV CETEG
Sbjct: 403 KKIARKKVRTFEDFHDMTLQERAEVLQQVAGFSSAEVQDVEMVLEMMPSVTVEVRCETEG 462

Query: 121 EEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 180
           EEGIQEGDIVT+ AW+TLKR NGL+GALPHAP +PFHKEENFWFLLAD+ SN+VWFSQKV
Sbjct: 463 EEGIQEGDIVTVHAWITLKRANGLVGALPHAPSFPFHKEENFWFLLADAASNDVWFSQKV 522

Query: 181 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNY 240
           +FMDE AAIT ASK IEDTMEGSGA+V+ETSAAVREA EKVR GSRLVMGK+ APAEGNY
Sbjct: 523 NFMDEAAAITGASKTIEDTMEGSGASVRETSAAVREAVEKVRGGSRLVMGKLPAPAEGNY 582

Query: 241 NLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDG-AEEEEEDEEEEY 299
           NLTCYCLCDSW+GCDK+T+LKVK+LKRTRAGTRGG+VSEEGPI EDG  EEEE +EEE  
Sbjct: 583 NLTCYCLCDSWIGCDKKTSLKVKVLKRTRAGTRGGLVSEEGPIAEDGIEEEEENEEEEYD 642

Query: 300 DDYESEYSEDEEDERDTKKKVPAANGTVSKK 330
           DDYESEYSEDEEDE+DTKKK PAANG V KK
Sbjct: 643 DDYESEYSEDEEDEKDTKKKGPAANGKVQKK 673

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464625|ref|XP_002275958.1| PREDICTED: translocation protein SEC63 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556432|ref|XP_003546530.1| PREDICTED: translocation protein SEC63 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449485587|ref|XP_004157217.1| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445973|ref|XP_004140746.1| PREDICTED: translocation protein SEC63 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530479|ref|XP_003533808.1| PREDICTED: translocation protein SEC63 homolog [Glycine max] Back     alignment and taxonomy information
>gi|255545152|ref|XP_002513637.1| heat shock protein binding protein, putative [Ricinus communis] gi|223547545|gb|EEF49040.1| heat shock protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224135305|ref|XP_002327614.1| predicted protein [Populus trichocarpa] gi|222836168|gb|EEE74589.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302143768|emb|CBI22629.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357450181|ref|XP_003595367.1| Chaperone protein dnaJ [Medicago truncatula] gi|355484415|gb|AES65618.1| Chaperone protein dnaJ [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
TAIR|locus:2016354687 ATERDJ2A [Arabidopsis thaliana 0.836 0.416 0.735 7.6e-118
TAIR|locus:2127373661 ATERDJ2B [Arabidopsis thaliana 0.812 0.420 0.611 3.8e-91
FB|FBgn02635992142 l(3)72Ab "lethal (3) 72Ab" [Dr 0.421 0.067 0.268 4.3e-10
UNIPROTKB|F1SU36553 SNRNP200 "Uncharacterized prot 0.421 0.260 0.274 1.1e-09
ZFIN|ZDB-GENE-081105-642134 si:ch211-251j10.5 "si:ch211-25 0.421 0.067 0.292 2.9e-09
WB|WBGene000128962145 snrp-200 [Caenorhabditis elega 0.400 0.063 0.317 1.1e-08
UNIPROTKB|Q9U2G02145 Y46G5A.4 "Putative U5 small nu 0.400 0.063 0.317 1.1e-08
UNIPROTKB|F1LNJ22139 Ascc3l1 "Protein Ascc3l1" [Rat 0.421 0.067 0.268 4.1e-08
UNIPROTKB|O756432136 SNRNP200 "U5 small nuclear rib 0.421 0.067 0.268 6.5e-08
UNIPROTKB|E1BH782136 LOC100850262 "Uncharacterized 0.421 0.067 0.274 8.4e-08
TAIR|locus:2016354 ATERDJ2A [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1127 (401.8 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
 Identities = 211/287 (73%), Positives = 252/287 (87%)

Query:     1 MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVI 60
             MAVIPRTAQGHGWLRPAVGVVELSQ I+QAVPLS+RK++G S+EG +PFLQLPHF++AV+
Sbjct:   343 MAVIPRTAQGHGWLRPAVGVVELSQCIVQAVPLSARKSSGVSSEGISPFLQLPHFSDAVV 402

Query:    61 KKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXX 120
             KKIARKKV++FQ+L++M L+DR+ELL+QV G S+T+V+D+E VL+MMPS+          
Sbjct:   403 KKIARKKVKSFQDLQEMRLEDRSELLTQVAGLSATDVEDIEKVLEMMPSITVDITCETEG 462

Query:   121 XXXIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 180
                IQEGDIVT+QAWVTLKR NGL+GALPHAPY+PFHKEEN+W LLADSVSNNVWFSQKV
Sbjct:   463 EEGIQEGDIVTLQAWVTLKRPNGLVGALPHAPYFPFHKEENYWVLLADSVSNNVWFSQKV 522

Query:   181 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNY 240
             SF+DE  AITAASKAI ++MEGSGA VKET+ AVREA EKV+ GSRLVMGK+QAPAEG Y
Sbjct:   523 SFLDEGGAITAASKAISESMEGSGAGVKETNDAVREAIEKVKGGSRLVMGKLQAPAEGTY 582

Query:   241 NLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDG 287
             NLTC+CLCD+W+GCDK+  LKVK+LKRTRAGTRG +VS+EG I E+G
Sbjct:   583 NLTCFCLCDTWIGCDKKQALKVKVLKRTRAGTRG-LVSDEGAIAEEG 628
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
TAIR|locus:2127373 ATERDJ2B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0263599 l(3)72Ab "lethal (3) 72Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU36 SNRNP200 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081105-64 si:ch211-251j10.5 "si:ch211-251j10.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00012896 snrp-200 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9U2G0 Y46G5A.4 "Putative U5 small nuclear ribonucleoprotein 200 kDa helicase" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNJ2 Ascc3l1 "Protein Ascc3l1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O75643 SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BH78 LOC100850262 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_IV000840
SubName- Full=Putative uncharacterized protein; (685 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVIII.2978.1
SecY protein (478 aa)
     •  0.800
gw1.IX.4814.1
SubName- Full=Putative uncharacterized protein; (83 aa)
     •  0.800
gw1.I.3107.1
hypothetical protein (68 aa)
     •  0.800
grail3.0033027302
SubName- Full=Putative uncharacterized protein; (84 aa)
     •  0.800
grail3.0005029101
SubName- Full=Putative uncharacterized protein; (69 aa)
     •  0.800
fgenesh4_pm.C_LG_XII000368
SubName- Full=Putative uncharacterized protein; (69 aa)
     •  0.800
estExt_fgenesh4_pg.C_1780025
Sec61 transport protein (477 aa)
     •  0.800
estExt_Genewise1_v1.C_LG_XI3485
SubName- Full=Putative uncharacterized protein; (476 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
smart00611312 smart00611, SEC63, Domain of unknown function in S 4e-42
pfam02889309 pfam02889, Sec63, Sec63 Brl domain 4e-36
smart00973314 smart00973, Sec63, Sec63 Brl domain 2e-16
pfam03344 715 pfam03344, Daxx, Daxx Family 0.002
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information 
 Score =  148 bits (375), Expect = 4e-42
 Identities = 65/258 (25%), Positives = 100/258 (38%), Gaps = 68/258 (26%)

Query: 7   TAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK 66
            A   GWL  A+  + LSQ IIQA+  +             P LQLPH  E ++K++ +K
Sbjct: 122 IALERGWLSTALNALNLSQMIIQALWPTDS-----------PLLQLPHLPEEILKRLEKK 170

Query: 67  KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQE 126
           KV + ++L ++  ++R ELL    G    E + V  VL  +P L +E++   E       
Sbjct: 171 KVLSLEDLLELEDEERGELL----GLLDAEGERVYKVLSRLPKLNIEISL--EPITRTVL 224

Query: 127 GDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEP 186
           G  VT+   +T                    K+E +W ++ DS  N +   ++ S     
Sbjct: 225 GVEVTLTVDLTWDD-------------EIHGKQEGWWLVIGDSDGNELLHIERFSL---- 267

Query: 187 AAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPA-EGNYNLTCY 245
                                              ++ S  V     APA EGNY  T  
Sbjct: 268 ---------------------------------NKKNVSEEVKLDFTAPATEGNYQYTLR 294

Query: 246 CLCDSWLGCDKRTNLKVK 263
            + DS+LGCD+   L   
Sbjct: 295 LVSDSYLGCDQEYPLSFD 312

Length = 312
>gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
KOG4434520 consensus Molecular chaperone SEC63, endoplasmic r 100.0
smart00611312 SEC63 Domain of unknown function in Sec63p, Brr2p 100.0
PF02889314 Sec63: Sec63 Brl domain; InterPro: IPR004179 This 100.0
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 99.88
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.74
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.71
PRK01172674 ski2-like helicase; Provisional 98.4
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.39
PRK02362737 ski2-like helicase; Provisional 98.05
PRK00254720 ski2-like helicase; Provisional 97.71
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 93.34
KOG1824 1233 consensus TATA-binding protein-interacting protein 88.54
PRK04301317 radA DNA repair and recombination protein RadA; Va 83.02
PF04931 784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 81.08
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 80.77
PF1524392 ANAPC15: Anaphase-promoting complex subunit 15 80.72
PF06524314 NOA36: NOA36 protein; InterPro: IPR010531 This fam 80.2
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-41  Score=324.08  Aligned_cols=237  Identities=32%  Similarity=0.537  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhc-CCCCHHHHHcCCHHHHHHHHhhccCC
Q 019342           14 LRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK-KVRTFQELRDMSLQDRAELLSQVGGF   92 (342)
Q Consensus        14 L~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~-~v~tl~~L~~m~~~er~~lL~~~~~l   92 (342)
                      +.+.-+||.|++|+|||+|.           ..||||||||++++.+.++.++ +|+++++|..|..+.|+.||+.   |
T Consensus       129 iet~eNcmKlspM~vQgLwq-----------fkSPLLQLPHitednL~~~~KKr~vks~qdla~lk~e~rr~lL~~---L  194 (520)
T KOG4434|consen  129 IETFENCMKLSPMFVQGLWQ-----------FKSPLLQLPHITEDNLQHLRKKRKVKSCQDLAVLKAETRRSLLRS---L  194 (520)
T ss_pred             HHHHHHHHhccHHHHHHHHH-----------hcChhhcCCccchHHHHHHhhhcccccHHHHhhcCHHHHHHHHHh---c
Confidence            67888999999999999998           8999999999999999999755 4999999999999999999997   8


Q ss_pred             ChHHHHHHHHHHhcCCceeEEEEEEecCCc---cccCCCeEEEEEeeeeecc----------------------------
Q 019342           93 SSTEVQDVEMVLQMMPSLTVEVTCETEGEE---GIQEGDIVTIQAWVTLKRG----------------------------  141 (342)
Q Consensus        93 ~~~~~~~v~~v~~~iP~I~i~a~~~v~gee---~It~g~~vtl~~~V~L~R~----------------------------  141 (342)
                      ++..+.+++.||.+||.|.|++.+.|.|++   .||+|++||+.  |+|+|.                            
T Consensus       195 sdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~--Vtl~R~~l~d~~e~~~~d~~k~paedG~~de~n~  272 (520)
T KOG4434|consen  195 SDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVK--VTLRRSRLIDPQEAGLADQYKKPAEDGGDDENNL  272 (520)
T ss_pred             chHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEE--EEEEeccccChHhhhhhhhhhCchhhCCCcccch
Confidence            999999999999999999999999998875   59999999999  888873                            


Q ss_pred             --------------------------------------------------------------------------C-----
Q 019342          142 --------------------------------------------------------------------------N-----  142 (342)
Q Consensus       142 --------------------------------------------------------------------------n-----  142 (342)
                                                                                                |     
T Consensus       273 ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ka~eeea~~~~sD~E~e~~n~Ds~d  352 (520)
T KOG4434|consen  273 EASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATEKALEEEAKDKGSDSEEEETNRDSQD  352 (520)
T ss_pred             hccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhhhhhHHHhhhcCcchhhhhhcccccc
Confidence                                                                                      0     


Q ss_pred             ------------------------------------------CCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeee
Q 019342          143 ------------------------------------------GLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV  180 (342)
Q Consensus       143 ------------------------------------------~~~~~~~~aP~FP~~K~E~WwvllgD~~~n~Ll~~krv  180 (342)
                                                                ......+||||||..|.|.||++|.|.++..|+.+...
T Consensus       353 ees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFPeEKqEwWW~Yi~drKsrtLlt~Pyh  432 (520)
T KOG4434|consen  353 EESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFPEEKQEWWWLYIADRKSRTLLTMPYH  432 (520)
T ss_pred             cccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCcchhhheeeeeeecccccceecchhh
Confidence                                                      01234599999999999999999999999999875322


Q ss_pred             ecccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCC-CCceeEEEEEEcCCCcccceEEE
Q 019342          181 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPA-EGNYNLTCYCLCDSWLGCDKRTN  259 (342)
Q Consensus       181 ~~~~~~~~~~~~~k~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~s~~v~l~F~aP~-~G~~~l~l~viSDsYlG~D~~~~  259 (342)
                       +..           +.                          .+..|.|+|++|. ||.|+|+|++.||||+|+||..+
T Consensus       433 -V~t-----------L~--------------------------d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~  474 (520)
T KOG4434|consen  433 -VCT-----------LK--------------------------DTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKP  474 (520)
T ss_pred             -hhc-----------cc--------------------------ccceeEEeccCCCCCCceEEEEEEecccccChhhccc
Confidence             111           10                          1246889999994 99999999999999999999999


Q ss_pred             EEEEeeecCcCCCCCccccCCCCCccCCCCCcccccccccCCcCCccccchhhhh
Q 019342          260 LKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEEEDEEEEYDDYESEYSEDEEDER  314 (342)
Q Consensus       260 i~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  314 (342)
                      ++|.|.+++.       |++..|.+++.++++|+-++   ++.=++|++|++++.
T Consensus       475 lKldV~eAk~-------vp~~Hpqwd~~~~e~e~~~~---~e~~~Dyted~~~eE  519 (520)
T KOG4434|consen  475 LKLDVHEAKP-------VPENHPQWDTAIEEDEDQED---SEGFEDYTEDEEEEE  519 (520)
T ss_pred             eeeeeccCCC-------CCCCCccccccccccccccc---ccccccccccccccc
Confidence            9999998876       88899999999988886653   334467777766653

>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15 Back     alignment and domain information
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
4f91_B1724 Brr2 Helicase Region Length = 1724 1e-09
4f92_B1724 Brr2 Helicase Region S1087l Length = 1724 1e-09
3im1_A328 Structure Of The C-Terminal Sec63 Unit Of Yeast Brr 4e-06
3hib_A318 Crystal Structure Of The Second Sec63 Domain Of Yea 5e-06
2q0z_X339 Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. 2e-05
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 60/253 (23%)
Query: 10   GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVR 69
             +GWL PA+  +EL+Q + QA+               +   QLPHFT   IK+   K V 
Sbjct: 1531 SNGWLSPALAAMELAQMVTQAM-----------WSKDSYLKQLPHFTSEHIKRCTDKGVE 1579
Query: 70   TFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDI 129
            +  ++ +M  ++R  LL      + +++ DV       P++             I+ G  
Sbjct: 1580 SVFDIMEMEDEERNALLQ----LTDSQIADVARFCNRYPNI--ELSYEVVDKDSIRSGGP 1633
Query: 130  VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 189
            V +   V L+R   + G +  AP +P  +EE +W ++ D+ SN++   ++         +
Sbjct: 1634 VVV--LVQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSLISIKR---------L 1681
Query: 190  TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 249
            T   KA                        KV+           APA G +N T Y + D
Sbjct: 1682 TLQQKA------------------------KVKLD-------FVAPATGAHNYTLYFMSD 1710
Query: 250  SWLGCDKRTNLKV 262
            +++GCD+     V
Sbjct: 1711 AYMGCDQEYKFSV 1723
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 Back     alignment and structure
>pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 Back     alignment and structure
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 4e-31
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 2e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 Back     alignment and structure
 Score =  118 bits (297), Expect = 4e-31
 Identities = 50/257 (19%), Positives = 98/257 (38%), Gaps = 59/257 (22%)

Query: 8   AQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKK 67
              +G+L  A   ++L+Q +IQ V            +   P  Q+PHF   +++K     
Sbjct: 130 LSANGYLN-ATTAMDLAQMLIQGVW-----------DVDNPLRQIPHFNNKILEKCKEIN 177

Query: 68  VRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEG 127
           V T  ++  +  ++R E+L+     + +++  V   +   P+  VE+T      + +  G
Sbjct: 178 VETVYDIMALEDEERDEILT----LTDSQLAQVAAFVNNYPN--VELTYSLNNSDSLISG 231

Query: 128 DIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPA 187
               I   + L R          +  YPF K E++W +L +     ++  +KV+   E  
Sbjct: 232 VKQKI--TIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE-- 287

Query: 188 AITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCL 247
                                                ++    +   P  G +NLT +C+
Sbjct: 288 -------------------------------------TQQYELEFDTPTSGKHNLTIWCV 310

Query: 248 CDSWLGCDKRTNLKVKI 264
           CDS+L  DK  + ++ +
Sbjct: 311 CDSYLDADKELSFEINV 327
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 100.0
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.87
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 98.63
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 98.62
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 98.31
1wcn_A70 Transcription elongation protein NUSA; RNA-binding 95.42
2kz3_A83 Putative uncharacterized protein RAD51L3; RAD51D, 93.06
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 87.24
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 83.62
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 82.29
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 80.76
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Back     alignment and structure
Probab=100.00  E-value=2.4e-45  Score=355.19  Aligned_cols=202  Identities=23%  Similarity=0.462  Sum_probs=186.2

Q ss_pred             cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHH
Q 019342            5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAE   84 (342)
Q Consensus         5 ~~~a~~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~   84 (342)
                      -.+|+.+||++ ++++|+|+|||+||+|+           +++||+|||||+.+.++++.++++.++.+|.+|++++++.
T Consensus       127 ~di~~~~g~~~-~~~~l~L~q~i~q~~w~-----------~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~  194 (328)
T 3im1_A          127 VDILSANGYLN-ATTAMDLAQMLIQGVWD-----------VDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDE  194 (328)
T ss_dssp             HHHHHHTTBTT-HHHHHHHHHHHHHTSCT-----------TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHH
T ss_pred             HHHHHcCCcHH-HHHHHHHHHHHHhhcCC-----------CCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHh
Confidence            45788999999 99999999999999998           7899999999999999999988999999999999999999


Q ss_pred             HHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEE
Q 019342           85 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWF  164 (342)
Q Consensus        85 lL~~~~~l~~~~~~~v~~v~~~iP~I~i~a~~~v~gee~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwv  164 (342)
                      +|+    +++.+++++.++|++||.|+|+  ++|.|++.|++|+.++|+  |+|+|.+......+||||||+.|.|+|||
T Consensus       195 ll~----~~~~~~~~v~~~~~~~P~l~v~--~~v~~~~~i~~~~~~~l~--v~l~~~~~~~~~~~~ap~fp~~k~e~ww~  266 (328)
T 3im1_A          195 ILT----LTDSQLAQVAAFVNNYPNVELT--YSLNNSDSLISGVKQKIT--IQLTRDVEPENLQVTSEKYPFDKLESWWL  266 (328)
T ss_dssp             HCC----CCHHHHHHHHHHHHHCCCEEEE--EEETTGGGCCTTSEEEEE--EEEEESSCCSCCBCCCSSCCBCCBCCEEE
T ss_pred             HhC----CCHHHHHHHHHHHHhCCCEEEE--EEecCCCcccCCCeEEEE--EEEEECCCCCCCcEECCCCCCCccCCEEE
Confidence            875    8899999999999999999976  678898899999999999  99999876666789999999999999999


Q ss_pred             EEEECCCCeEEEEeeeecccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEE
Q 019342          165 LLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTC  244 (342)
Q Consensus       165 llgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~s~~v~l~F~aP~~G~~~l~l  244 (342)
                      +|||+++|+|+++||+++.++                                       .+.++++|++|++|+|+|+|
T Consensus       267 ~v~d~~~~~l~~~kr~~~~~~---------------------------------------~~~~~~~f~~p~~g~~~~~v  307 (328)
T 3im1_A          267 VLGEVSKKELYAIKKVTLNKE---------------------------------------TQQYELEFDTPTSGKHNLTI  307 (328)
T ss_dssp             EEEEGGGTEEEEEEEECCCSS---------------------------------------EEEEEEEEECCCSEEEEEEE
T ss_pred             EEEECCCCeEEEEeeeccccc---------------------------------------ceEEEEEEEcCCCCcEEEEE
Confidence            999999999999999998641                                       13577999999889999999


Q ss_pred             EEEcCCCcccceEEEEEEEee
Q 019342          245 YCLCDSWLGCDKRTNLKVKIL  265 (342)
Q Consensus       245 ~viSDsYlG~D~~~~i~l~V~  265 (342)
                      +||||+|+|||++++|+|+|.
T Consensus       308 ~~vsD~ylG~d~~~~~~l~V~  328 (328)
T 3im1_A          308 WCVCDSYLDADKELSFEINVK  328 (328)
T ss_dssp             EEEESSCSSCCEEEEEEEEEC
T ss_pred             EEEecCCcceeEEEEEEEEeC
Confidence            999999999999999999984
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B Back     alignment and structure
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d2q0zx2114 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo 1e-23
d2q0zx1176 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo 2e-15
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Sec63 C-terminal domain-like
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (228), Expect = 1e-23
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 43/153 (28%)

Query: 112 VEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVS 171
           +E++ E   ++ I+ G  V +   V L+R   + G +  AP +P  +EE +W ++ D+ S
Sbjct: 2   IELSYEVVDKDSIRSGGPVVVL--VQLEREEEVTGPV-IAPLFPQKREEGWWVVIGDAKS 58

Query: 172 NNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGK 231
           N++   ++++                                              V   
Sbjct: 59  NSLISIKRLTLQQ----------------------------------------KAKVKLD 78

Query: 232 IQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKI 264
             APA G +N T Y + D+++GCD+     V +
Sbjct: 79  FVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDV 111
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d2q0zx2114 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 99.97
d2q0zx1176 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 99.7
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 95.12
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 94.24
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 93.36
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 93.28
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 86.85
d1b22a_70 DNA repair protein Rad51, N-terminal domain {Human 85.67
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 84.19
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Sec63 C-terminal domain-like
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=221.39  Aligned_cols=113  Identities=27%  Similarity=0.528  Sum_probs=102.1

Q ss_pred             EEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeeeecccchhHHhh
Q 019342          112 VEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITA  191 (342)
Q Consensus       112 i~a~~~v~gee~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~WwvllgD~~~n~Ll~~krv~~~~~~~~~~~  191 (342)
                      |++++.|.+++.|.+|+.++|+  |+|+|.|.. .+++||||||+.|.|+|||+|||.++|+|+++||+++.+.      
T Consensus         2 i~~~~~v~d~~~v~~g~~~~l~--V~l~R~~~~-~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~~------   72 (114)
T d2q0zx2           2 IELSYEVVDKDSIRSGGPVVVL--VQLEREEEV-TGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK------   72 (114)
T ss_dssp             EEEEEEETTGGGCBTTSEEEEE--EEEEECSSC-CSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE------
T ss_pred             ceEEEEEcCCcceecCCeEEEE--EEEEEcCCc-CCcEECCCCCCCCcccEEEEEEECCCCEEEEEeEeccccc------
Confidence            5567889999999999999999  999998753 4589999999999999999999999999999999988651      


Q ss_pred             hhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEEEEEcCCCcccceEEEEEEEeeec
Q 019342          192 ASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKR  267 (342)
Q Consensus       192 ~~k~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~s~~v~l~F~aP~~G~~~l~l~viSDsYlG~D~~~~i~l~V~~~  267 (342)
                                                        ..++++|++|++|.|+|+||||||||+|||++++|+|+|.++
T Consensus        73 ----------------------------------~~~~l~f~~p~~G~~~~~l~~~sDsY~G~D~~~~~~~~V~eA  114 (114)
T d2q0zx2          73 ----------------------------------AKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA  114 (114)
T ss_dssp             ----------------------------------EEEEEEEECCSSEEEEEEEEEEESSCSSCCEEEEEEEEEBCC
T ss_pred             ----------------------------------eEEEEEEeCCCCCeEEEEEEEEcccccccceEEEEEEEeecC
Confidence                                              246799999999999999999999999999999999999764
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure