Citrus Sinensis ID: 019348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccccccHHHHHHccccccccccEEEEccccccEEHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEccccccccHHHHHHHHHHcccEEEEEccccHHHHHccccccEEcccccccccccccccccccccHHHHHHcccccccccccccccccEEEEEcccccccccHHHHHccHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccccccccccccHHHHHHHHHHHcccccEEEEcccccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHcccEEEEEccHHcccccccccHHHHHHHHccccccEccccccccccHHHHHHHcccccccccccccccccEEEEEccccccccccEEEEcccEEEEEEEcccccccccccccEEEEEEcEEEHHcHHHHEHHHHHcccEEEEEccccHHHHHHHHHHcccEEEcccHHHHHHHHHccccccccHHHHHEEccccccccHHHHHHHHHHccccEEcccc
Coil and Loop (DISEMBL)
meksgygrdgiyrslrpplvlpsdpsfsmvhflfrnsasyssklalidadsdeslsfsQFKSIVIKVSHsfrhlgitkkdvvlifapnsihfpiCFLGVIAIGAiastanpvyTVSELskqvkdsnpklvitvpelwdkvkdlnlpavllgskdkvsssglisrsskivSFHDLIelsgsvtdipdvsvkqTDAAALLYssgttgvskGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDqlqkgncvvsmGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLvrkfdisslklvgsgaaplgkELMEDCqknipgatifqki
Flexible Loop (DISEMBL)
meksgygrdgiyrslrpplvlpSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSElskqvkdsnpkLVITVPELWDKVKDLNLPAVllgskdkvsssglisrsskIVSFHDLIELSgsvtdipdvSVKQTDAAALLYSsgttgvskGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQknipgatifqki
Low Complexity Region (SEG)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDkvsssglisrsskivsFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI
Disordered region (IsUnstruct)
***********Y******LVLP*DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK*******LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK*L*****************
Disordered Region (DISOPRED)
******G**GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI
Disordered Region (DISEMBL)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK**********RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI
Disordered Region (DISPRO)
*****YGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.988	0.621	0.635	1e-126
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.979	0.606	0.442	3e-76
Q42524	561	4-coumarate--CoA ligase 1	no	no	0.964	0.588	0.367	3e-53
P31685	545	4-coumarate--CoA ligase 2	N/A	no	0.923	0.579	0.371	8e-53
P31687	562	4-coumarate--CoA ligase 2	no	no	0.871	0.530	0.405	9e-53
P31684	545	4-coumarate--CoA ligase 1	N/A	no	0.923	0.579	0.371	2e-52
Q9S777	561	4-coumarate--CoA ligase 3	no	no	0.906	0.552	0.368	4e-52
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.923	0.577	0.365	4e-52
O24540	553	4-coumarate--CoA ligase O	N/A	no	0.938	0.580	0.372	5e-52
Q9S725	556	4-coumarate--CoA ligase 2	no	no	0.935	0.575	0.364	5e-52

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/340 (63%), Positives = 273/340 (80%), Gaps = 2/340 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD V        +SKI+SF +++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPP--GSNSKILSFDNVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + Q
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ 338

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/339 (44%), Positives = 216/339 (63%), Gaps = 4/339 (1%)

Query: 4   SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNS-ASYSSKLALIDADSDESLSFSQFKS 62
           +GYG DG+YRSLRPP  + SDP  S+   L R + A  S+      A    +L+F++ +S
Sbjct: 9   AGYGADGVYRSLRPPAPVASDPGLSLTDLLLRRADACPSAVALADAAAGGRALTFAELRS 68

Query: 63  IVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
            V+  + +     G+   D VL+ APN + +P+CF  V A+GA+ +T NP YT  E++KQ
Sbjct: 69  AVLSTAVALSSRAGVRPGDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPREIAKQ 128

Query: 122 VKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181
           V D+  KLVIT+  L  K+  L LP +LL      +++ L   ++  V+ +  +      
Sbjct: 129 VSDARAKLVITISALVPKIAGLRLPVILLDDDANAAAASLPPDAT--VTLYTNLVAGVKE 186

Query: 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 241
            D     +KQ+D AALLYSSGTTG SKGVILTH+NFIAA+ M+++ Q+   E  +V LC 
Sbjct: 187 ADYRRPPIKQSDTAALLYSSGTTGDSKGVILTHRNFIAAARMVTSDQDERREGPNVFLCF 246

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LPMFH+FGLSVI Y QL +GN +++M +FDI   + A++++RVT  + VPP+I+ALAK+ 
Sbjct: 247 LPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRHRVTHLFCVPPVIIALAKHG 306

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
              K+D+SSLK +GSGAAPLGK++ME   K  P + I Q
Sbjct: 307 KAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQ 345

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q42524|4CL1_ARATH 4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/351 (36%), Positives = 202/351 (57%), Gaps = 21/351 (5%)

Query: 1   MEK--SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
           MEK  +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct: 12  MEKQSNNNNSDVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYS 69

Query: 59  QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
               I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct: 70  DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 129

Query: 119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
           +KQ K SN KL+IT     DK+K L N   V++   D   S   +      + F +L + 
Sbjct: 130 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNES---VPIPEGCLRFTELTQS 186

Query: 178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--- 233
           +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE   
Sbjct: 187 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPN 241

Query: 234 ----LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +
Sbjct: 242 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPM 301

Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           VPPI+LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + Q
Sbjct: 302 VPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 352

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31685|4CL2_SOLTU 4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1

 Score =  207 bits (528), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 193/339 (56%), Gaps = 23/339 (6%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + ++S+  LID  +D   ++++ +    KV+
Sbjct: 12  DLIFRSKLPDIYIPK--HLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVA 69

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PN   F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 70  VGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAK 129

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           +VIT      KVKD  +       ++ +    + S     V F +LI+      +IPDV 
Sbjct: 130 IVITQACFAGKVKDYAI-------ENDLKVICVDSAPEGCVHFSELIQ--SDEHEIPDVK 180

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V++CV
Sbjct: 181 IQPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENANLYMHSDDVLMCV 235

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ +L   L+ G  ++ M KFDI   L  I K++VT+   VPPI+LA+AK+ 
Sbjct: 236 LPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSP 295

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           LV  +D+SS++ V SGAAPLGKEL +  +   P A + Q
Sbjct: 296 LVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ 334

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  207 bits (527), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 186/316 (58%), Gaps = 18/316 (5%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
           + F+N + ++ +  LI   + ++ +++    I  K++    +LGI K DVV+I   NS  
Sbjct: 45  YCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSAD 104

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F   FL +  IGA+A+TANP YT  E+ KQ   S  KL+IT     DK++  N     LG
Sbjct: 105 FVFSFLAISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLR--NHDGAKLG 162

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
              KV +  +       + F  L E + S  D+P+V +   DA A+ +SSGTTG+ KGVI
Sbjct: 163 EDFKVVT--VDDPPENCLHFSVLSEANES--DVPEVEIHPDDAVAMPFSSGTTGLPKGVI 218

Query: 212 LTHKNFIAASLMISAHQELVGE-------LDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
           LTHK     SL  S  Q++ GE        + V+LCVLP+FH+F L+ +L   L+ G+ V
Sbjct: 219 LTHK-----SLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAV 273

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           + M KF+I   L  I+++RV+V  VVPP++LALAKN +V  FD+SS++LV SGAAPLGKE
Sbjct: 274 LLMQKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKE 333

Query: 325 LMEDCQKNIPGATIFQ 340
           L E  +  +P A + Q
Sbjct: 334 LEEALRNRMPQAVLGQ 349

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31684|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 193/339 (56%), Gaps = 23/339 (6%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + ++S+  LID  +D   ++++ +    KV+
Sbjct: 12  DLIFRSKLPDIYIPK--HLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVA 69

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PN   F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 70  VGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAK 129

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           +VIT      KVKD  +       ++ +    + S     V F +LI+      +IPDV 
Sbjct: 130 IVITQACFAGKVKDYAI-------ENDLKVICVDSVPEGCVHFSELIQ--SDEHEIPDVK 180

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V++CV
Sbjct: 181 IQPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENANLYMHSDDVLMCV 235

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ +L   L+ G  ++ M KFDI   L  I K++VT+   VPPI+LA+AK+ 
Sbjct: 236 LPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSP 295

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           LV  +D+SS++ V SGAAPLGKEL +  +   P A + Q
Sbjct: 296 LVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ 334

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  205 bits (522), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 196/342 (57%), Gaps = 32/342 (9%)

Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P+     +  + F   +S S K  LI   + +S ++ +   I  +V+  
Sbjct: 34  IFRSKLPDIDIPN--HLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASG 91

Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              LGI K DV++I   NS  F   F+G   IGA+++TANP YT  EL KQ+K S  KL+
Sbjct: 92  LYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLI 151

Query: 131 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS-----FHDLIELSGSVTDIP 185
           IT  +  DK+K+L     L+ + D+ +    +  S+ I       F + +++ G      
Sbjct: 152 ITHSQYVDKLKNLGENLTLI-TTDEPTPENCLPFSTLITDDETNPFQETVDIGGD----- 205

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVV 238
                  DAAAL +SSGTTG+ KGV+LTHK     SL+ S  Q++ G+        + V+
Sbjct: 206 -------DAAALPFSSGTTGLPKGVVLTHK-----SLITSVAQQVDGDNPNLYLKSNDVI 253

Query: 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
           LCVLP+FH++ L+ +L + L+ G  V+ M KF+I   L  I+++RVT+  +VPP+++ALA
Sbjct: 254 LCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALA 313

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           KN  V  +D+SS++ V SGAAPLGKEL +  ++ +P A + Q
Sbjct: 314 KNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQ 355

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  205 bits (522), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 195/339 (57%), Gaps = 23/339 (6%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + +SS+  LI+  +D+  ++++ +    KV+
Sbjct: 14  DLIFRSKLPDIYIPK--HLPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELTCRKVA 71

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PNS  F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 72  VGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQAKASSAK 131

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           ++IT      KVKD         S++ V    + S     + F +L +      +IP+V 
Sbjct: 132 IIITQSCFVGKVKDY-------ASENDVKVICIDSAPEGCLHFSELTQ--SDEHEIPEVK 182

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        + V++CV
Sbjct: 183 IQPDDVVALPYSSGTTGLPKGVMLTHKG-----LVTSVAQQVDGENANLYMHSEDVLMCV 237

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ IL   L+ G  ++ M KFDI   L  I+KY+V++   VPPI+LA+AK+ 
Sbjct: 238 LPLFHIYSLNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVLAIAKSP 297

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           +V  +D+SS++ V SGAAPLGKEL +  +   P A + Q
Sbjct: 298 IVDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQ 336

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24540|4CL_VANPL 4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1

 Score =  205 bits (521), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 195/341 (57%), Gaps = 20/341 (5%)

Query: 8   RDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKV 67
           +D I+RS  P + +P +    +  + F N + +SS+  LI+  +DE  +++  + I  +V
Sbjct: 12  KDIIFRSKLPDIYIPKN--LPLHSYCFENISKFSSRPCLINGATDEIFTYADVELISRRV 69

Query: 68  SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127
                 LGI + D ++I  PNS  F   FLG   IG+I++ ANP +T +E+ KQ K SN 
Sbjct: 70  GSGLSKLGIKQGDTIMILLPNSPEFVFAFLGASFIGSISTMANPFFTSTEVIKQAKASNA 129

Query: 128 KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS-VTDIPD 186
           KL+IT     DKVKD      +     K+ S    + +    +     EL+G+   ++P 
Sbjct: 130 KLIITQGCYVDKVKDYACENGV-----KIISIDTTTTADDAANILHFSELTGADENEMPK 184

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVL 239
           V +      AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V+L
Sbjct: 185 VEISPDGVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPNLYMHSDDVLL 239

Query: 240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
           CVLP+FH++ L+ +L   L+ G+ ++ M KF+I   L  I+KY+VT+   VPPI+LA+AK
Sbjct: 240 CVLPLFHIYSLNSVLLCGLRAGSGILIMQKFEIVPFLELIQKYKVTIGPFVPPIVLAIAK 299

Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           +++V  +D+SS++ V SGAAPLGKEL +  +   P A + Q
Sbjct: 300 STVVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ 340

Vanilla planifolia (taxid: 51239)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score =  205 bits (521), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 193/340 (56%), Gaps = 20/340 (5%)

Query: 8   RDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKV 67
            D I+RS  P + +P+     +  ++F N + +++K  LI+  + E  +++       K+
Sbjct: 19  NDVIFRSRLPDIYIPN--HLPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKL 76

Query: 68  SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127
           +    +LG+ + DVV+I  PNS    + FL    IGAI ++ANP +T +E+SKQ K S  
Sbjct: 77  AAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAA 136

Query: 128 KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 187
           KL++T     DK+K+L    VL+ + D  +      R S++    +       V  IP+ 
Sbjct: 137 KLIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLRFSELTQSEE-----PRVDSIPE- 190

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLC 240
            +   D  AL +SSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V+LC
Sbjct: 191 KISPEDVVALPFSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPNLYFNRDDVILC 245

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
           VLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  VVPPI+LA+AK+
Sbjct: 246 VLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKS 305

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
               K+D+SS+++V SGAAPLGKEL +      P A + Q
Sbjct: 306 PETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQ 345

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
255565415	542	AMP dependent CoA ligase, putative [Rici	0.982	0.619	0.702	1e-135
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.985	0.620	0.679	1e-129
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.988	0.621	0.652	1e-128
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.979	0.616	0.652	1e-128
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.985	0.620	0.670	1e-127
312281669	543	unnamed protein product [Thellungiella h	0.985	0.620	0.632	1e-125
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.988	0.621	0.635	1e-124
225436506	544	PREDICTED: 4-coumarate--CoA ligase-like	0.988	0.621	0.632	1e-124
147839714	663	hypothetical protein VITISV_031619 [Viti	0.988	0.509	0.632	1e-123
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.979	0.616	0.640	1e-121

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/340 (70%), Positives = 276/340 (81%), Gaps = 4/340 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ SMV FLFRN  SY  K ALIDAD  ++LSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPLLVLPKDPNLSMVSFLFRNCNSYPHKPALIDADLSKTLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIKVSH    LGI+K DVVLIFAPNS  FPICFL + +IGAIA+TANP+YT +E+SK
Sbjct: 61  KSIVIKVSHGLLKLGISKNDVVLIFAPNSYQFPICFLAITSIGAIATTANPLYTTTEISK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKLVITVPELW+KVKD NLPAV LG+K+ +    LI  +S+I SF  L+EL GS
Sbjct: 121 QIKDSNPKLVITVPELWNKVKDFNLPAVFLGAKESL----LIEPNSRIKSFDHLVELGGS 176

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            ++ P ++VKQTD A LLYSSGTTG+SKGVILTH NFIAAS MI+  QE+ GEL +V LC
Sbjct: 177 NSEFPTINVKQTDIATLLYSSGTTGISKGVILTHGNFIAASQMITMDQEIAGELHNVFLC 236

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKFD E+ L+A+EKYR+T  WVVPP+ILALAK 
Sbjct: 237 FLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKYRITHLWVVPPVILALAKQ 296

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           SLV+K+D+SSL+ VGSGAAPL KELME+C K IP A I Q
Sbjct: 297 SLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQ 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/340 (67%), Positives = 270/340 (79%), Gaps = 3/340 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP D + S+V FLFRNS SY  K ALIDAD   +LSFS+ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPRDSNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSEL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIK +H   +LGI+K DV+LIFAPNS  FP CFL + +IGA+A+TANP+YT SELSK
Sbjct: 61  KSIVIKFAHGLLNLGISKNDVILIFAPNSYQFPTCFLAITSIGAVATTANPLYTTSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKLVITVPELWDKVK  NLPAV LG K+    S  +   S+I SFH L+EL GS
Sbjct: 121 QIKDSNPKLVITVPELWDKVKGFNLPAVFLGPKE---VSLPLESGSRIRSFHSLVELGGS 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            ++ P   VKQ+D A LLYSSGTTGVSKGVILTH NFIAASLM+S  Q + GE+ +V LC
Sbjct: 178 NSEFPVSDVKQSDIATLLYSSGTTGVSKGVILTHGNFIAASLMVSMDQVMAGEIHNVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKF+ EM LR IEKYRVT  WVVPP+ILAL+K 
Sbjct: 238 FLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKYRVTHMWVVPPVILALSKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           +LV+K+D+SSL+ +GSGAAPLGK+LM++C KN+P  TI Q
Sbjct: 298 NLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQ 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/340 (65%), Positives = 275/340 (80%), Gaps = 2/340 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+DS +SLSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDSGDSLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F+ LG+ K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFQRLGVRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  NLP VLLGSKD V        +SKI+SF+D++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFNLPVVLLGSKDSVQIPP--GSNSKILSFNDVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+D P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSDYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM KF++E+ L+ IEKYRVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKYRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + Q
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ 338

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/342 (65%), Positives = 282/342 (82%), Gaps = 7/342 (2%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRPPL LP++ + SMV FLFRNS+SY  K ALID+++++ LSFS F
Sbjct: 1   MEKSGYGRDGIYRSLRPPLHLPNNNNLSMVSFLFRNSSSYPQKPALIDSETNQILSFSHF 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS VIKVSH F +LGI K DVVLI+APNSIHFP+CFLG+IA GAIA+T+NP+YTVSELSK
Sbjct: 61  KSTVIKVSHGFLNLGIKKNDVVLIYAPNSIHFPVCFLGIIASGAIATTSNPLYTVSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSNPKL+ITVP+L +KVK  NLP +L+G   +  SS     S K+++F+DL+ L GS
Sbjct: 121 QVKDSNPKLIITVPQLLEKVKGFNLPTILIGPDSEQESS-----SDKVMTFNDLVNLGGS 175

Query: 181 V-TDIPDV-SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
             ++ P V   KQ+D AALLYSSGTTG+SKGV+LTHKNFIA+SLM++  Q+LVGE+D+V 
Sbjct: 176 SGSEFPIVDDFKQSDTAALLYSSGTTGMSKGVVLTHKNFIASSLMVTMEQDLVGEMDNVF 235

Query: 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
           LC LPMFHVFGL++I Y QLQ+GN V+SM +FD+E  L+ +EKY+VT  WVVPP+ILAL+
Sbjct: 236 LCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKYKVTHLWVVPPVILALS 295

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           KNS+V+KF++SS+K +GSGAAPLGK+LME+C K +P   + Q
Sbjct: 296 KNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQ 337

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/340 (67%), Positives = 268/340 (78%), Gaps = 3/340 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS SY  K ALIDAD   +LSFS+ 
Sbjct: 1   MEKSGYGRDGIYRSLRPKLVLPKDPNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSEL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIKV+H   +LGI+K DVVLIFAPNS  FPICFL + + GAIA+TANP+YT SELSK
Sbjct: 61  KSIVIKVAHGLLNLGISKNDVVLIFAPNSYQFPICFLAITSTGAIATTANPLYTTSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKL+ITVPELWDKVK  NLPAV LG K +VS    +   S+I SF  L+ L GS
Sbjct: 121 QIKDSNPKLIITVPELWDKVKGFNLPAVFLGPK-RVSLP--LESGSRITSFDSLVGLGGS 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            +  P  +VKQ+D + LLYSSGTTGVSKGVILTH NFIAASLM++  Q + GE+  V LC
Sbjct: 178 NSQFPSSNVKQSDISTLLYSSGTTGVSKGVILTHGNFIAASLMVTMDQAMAGEMHDVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKF+ EM L+ IEK+RVT  WVVPP++LALAK 
Sbjct: 238 FLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKHRVTDMWVVPPVVLALAKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
            +V+K+DISSL+ +GSGAAPLGK+LM++C KN+P   I Q
Sbjct: 298 DMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQ 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/340 (63%), Positives = 273/340 (80%), Gaps = 3/340 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRN++SY SK AL+D+DS ++LSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNTSSYPSKPALVDSDSGDTLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI + DVVLIFAPNS  FP+CFL V AIG + +TANP+YT SE+SK
Sbjct: 61  KSAVSRLAHGFLRLGIRQNDVVLIFAPNSYQFPLCFLAVSAIGGVFTTANPLYTTSEISK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGS + V   G    +SKI+SF++++ELS  
Sbjct: 121 QIKDSNPKIIISVEQLFDKIKGFDLPIVLLGSGESVQVPG---SNSKILSFNNVMELSEP 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+D+P V +KQ+D AALLYSSGTTG+SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 178 VSDLPTVQIKQSDTAALLYSSGTTGISKGVELTHGNFIAASLMVTMDQDLMGEYHAVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN V+SM KF++E  L+ IEKYRVT  WVVPP+ LAL+K 
Sbjct: 238 FLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKYRVTQLWVVPPVFLALSKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           S+V+K+D+SSLK +GSGAAPLGK+LME+C +NI    + Q
Sbjct: 298 SIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQ 337

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/340 (63%), Positives = 273/340 (80%), Gaps = 2/340 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD V        +SKI+SF +++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPP--GSNSKILSFDNVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + Q
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436506|ref|XP_002276353.1| PREDICTED: 4-coumarate--CoA ligase-like 7 [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/340 (63%), Positives = 272/340 (80%), Gaps = 2/340 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSL PPLVLP DP+ S+V FLFR ++SY  + ALI+A S E+++F+QF
Sbjct: 1   MEKSGYGRDGIYRSLSPPLVLPKDPNLSLVSFLFRKASSYPRRPALIEAHSGETVNFAQF 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS+VIKVSH    LG+ K DVVLIFAPNSI +P+CF GVIAIGAIA+TANP+YTV+E+ K
Sbjct: 61  KSMVIKVSHGLTRLGLKKNDVVLIFAPNSIQYPLCFFGVIAIGAIATTANPLYTVAEIQK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSN KLVIT+P+LW+KVK LNLPAV+L S D  +S   I    KI  F DL++++G 
Sbjct: 121 QVKDSNAKLVITIPQLWEKVKALNLPAVILDSAD--TSKDTIQSPLKITYFSDLVKMAGE 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+  P VS+ Q D AALLYSSGTTG SKGVILTH NF+AA+LM++  +EL+GE+ +V LC
Sbjct: 179 VSHFPKVSITQGDTAALLYSSGTTGASKGVILTHGNFVAAALMVTMDEELMGEMHNVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+V++  QLQ G  +VSM KFD+++AL++IEKYRVT  W+VPP++LAL K 
Sbjct: 239 FLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKYRVTHMWLVPPVMLALVKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             + ++DISSLK +GSGAAPLGKELME+C K++P   + Q
Sbjct: 299 GKLDRYDISSLKHIGSGAAPLGKELMEECAKSLPHVAVGQ 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839714|emb|CAN70560.1| hypothetical protein VITISV_031619 [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/340 (63%), Positives = 269/340 (79%), Gaps = 2/340 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSL PPLVLP DP+ S+V FLFR ++SY  + ALI+A S E+++F QF
Sbjct: 84  MEKSGYGRDGIYRSLSPPLVLPKDPNLSLVSFLFRKASSYPRRPALIEAHSGETVNFXQF 143

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS+VIKVSH    LG+ K DVVLIFAPNSI +P+CF GVIAIGAIA+TANP+YTV+E  K
Sbjct: 144 KSMVIKVSHGLTRLGLKKNDVVLIFAPNSIQYPLCFFGVIAIGAIATTANPLYTVAEXQK 203

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSNPKLVIT+P+LW+KVK LNLPAV+L S D  +S   I    KI  F DL++++G 
Sbjct: 204 QVKDSNPKLVITIPQLWEKVKALNLPAVILDSAD--TSKDTIQSPLKITYFSDLVKMAGE 261

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+  P  S+ Q D AALLYSSGTTG SKGVILTH NF+AA+LM++  +EL+GE+ +V LC
Sbjct: 262 VSHFPKASITQGDTAALLYSSGTTGASKGVILTHGNFVAAALMVTMDEELMGEMHNVFLC 321

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+V++  QLQ G  +VSM KFD+++AL++IEKYRVT  W+VPP++LAL K 
Sbjct: 322 FLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKYRVTHMWLVPPVMLALVKQ 381

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             +  +DISSLK +GSGAAPLGKELME+C K++P   + Q
Sbjct: 382 GKLDXYDISSLKHIGSGAAPLGKELMEECXKSLPHVAVGQ 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/342 (64%), Positives = 269/342 (78%), Gaps = 7/342 (2%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGI+RSLRPPLV P DP+ SM+ FLFRN  SY ++LA++DA+S  S+S+SQ 
Sbjct: 1   MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNLLSYPNRLAIVDAESSNSVSYSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           K++ I+VS+    LGI K DVVLIFAPNS+ F ICF+GVIAIGAI +T NPVYTVSEL+K
Sbjct: 61  KALAIRVSNGLIQLGIEKNDVVLIFAPNSVQFTICFIGVIAIGAIVTTCNPVYTVSELTK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG- 179
           QV+D+ PKLVI+V ELWDKVK+LN+P VLL   D+   S +   S KI+ F+DL+ ++G 
Sbjct: 121 QVRDAKPKLVISVAELWDKVKNLNIPTVLL---DQQIPSAI--HSPKILCFNDLVNMAGD 175

Query: 180 -SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
            S ++ P V VKQ+D AALLYSSGTTG SKGVILTH NFIA+SLMI+  Q   GE   V 
Sbjct: 176 KSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHGNFIASSLMITMDQTFNGEEHGVF 235

Query: 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
           L  LPMFHVFGL+ I Y QLQKGN VVSM KF++E AL A+EKY+VT  WVVPP++LALA
Sbjct: 236 LNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALA 295

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           K SLV+K+++SS+K VGSGAAPLG+ELME+C  NIP A + Q
Sbjct: 296 KQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQ 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.988	0.621	0.620	4.2e-111
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.979	0.597	0.361	1.3e-50
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.944	0.580	0.361	2e-49
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.935	0.570	0.370	8.5e-49
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.938	0.583	0.358	1.6e-47
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.964	0.584	0.360	1.1e-46
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.950	0.595	0.342	1.4e-46
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.944	0.570	0.348	3.4e-45
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.956	0.594	0.349	1.5e-44
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.935	0.569	0.340	1.7e-43

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 211/340 (62%), Positives = 266/340 (78%)

Query:     1 MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
             MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct:     1 MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query:    61 KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
             KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct:    61 KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query:   121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGS 180
             Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD                F +++ELS  
Sbjct:   121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILS--FDNVMELSEP 178

Query:   181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
             V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct:   179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query:   241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
              LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct:   239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query:   301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + Q
Sbjct:   299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 125/346 (36%), Positives = 195/346 (56%)

Query:     1 MEKSGYGR--DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
             MEK       D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct:    12 MEKQSNNNNSDVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYS 69

Query:    59 QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
                 I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct:    70 DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 129

Query:   119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL 177
             +KQ K SN KL+IT     DK+K L N   V++   D                F +L + 
Sbjct:   130 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTELTQS 186

Query:   178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGEL 234
             +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK  +   A  +   +  L    
Sbjct:   187 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 246

Query:   235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
             D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +VPPI+
Sbjct:   247 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 306

Query:   295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + Q
Sbjct:   307 LAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 352

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 121/335 (36%), Positives = 188/335 (56%)

Query:     9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
             D I+RS  P + +P+     +  ++F N + +++K  LI+  + E  +++       K++
Sbjct:    20 DVIFRSRLPDIYIPNH--LPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLA 77

Query:    69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                 +LG+ + DVV+I  PNS    + FL    IGAI ++ANP +T +E+SKQ K S  K
Sbjct:    78 AGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAK 137

Query:   129 LVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTD-IPDV 187
             L++T     DK+K+L    VL+ + D                F +L +      D IP+ 
Sbjct:   138 LIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLR------FSELTQSEEPRVDSIPE- 190

Query:   188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMF 245
              +   D  AL +SSGTTG+ KGV+LTHK  +   A  +   +  L    D V+LCVLPMF
Sbjct:   191 KISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVLPMF 250

Query:   246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
             H++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  VVPPI+LA+AK+    K
Sbjct:   251 HIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEK 310

Query:   306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             +D+SS+++V SGAAPLGKEL +      P A + Q
Sbjct:   311 YDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQ 345

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 123/332 (37%), Positives = 188/332 (56%)

Query:    11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
             I+RS  P + +P+     +  + F   +S S K  LI   + +S ++ +   I  +V+  
Sbjct:    34 IFRSKLPDIDIPNH--LPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASG 91

Query:    71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
                LGI K DV++I   NS  F   F+G   IGA+++TANP YT  EL KQ+K S  KL+
Sbjct:    92 LYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLI 151

Query:   131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
             IT  +  DK+K+L     L+ + +                F  LI    +      V + 
Sbjct:   152 ITHSQYVDKLKNLGENLTLITTDEPTPENCLP--------FSTLITDDETNPFQETVDIG 203

Query:   191 QTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVF 248
               DAAAL +SSGTTG+ KGV+LTHK+ I   A  +   +  L  + + V+LCVLP+FH++
Sbjct:   204 GDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIY 263

Query:   249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
              L+ +L + L+ G  V+ M KF+I   L  I+++RVT+  +VPP+++ALAKN  V  +D+
Sbjct:   264 SLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDL 323

Query:   309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             SS++ V SGAAPLGKEL +  ++ +P A + Q
Sbjct:   324 SSVRFVLSGAAPLGKELQDSLRRRLPQAILGQ 355

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 119/332 (35%), Positives = 179/332 (53%)

Query:    12 YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSF 71
             + S R PL LPS  S  +  F+  +S +Y  K A IDA +D  +SFS     V +V+   
Sbjct:    24 FYSKRKPLALPSKESLDITTFI--SSQTYRGKTAFIDAATDHRISFSDLWMAVDRVADCL 81

Query:    72 RH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              H +GI + DVVL+ +PN+I  PI  L V+++GA+ +TANP+ T SE+ +Q+ DSNPKL 
Sbjct:    82 LHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNPKLA 141

Query:   131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
              T PEL  K+    +  VL   +D                  ++++   S   + +  V 
Sbjct:   142 FTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLT---EMMKKEPSGQAVRN-QVH 197

Query:   191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             + D A LLYSSGTTG SKGV  +H N IA      A  E   +     +C +P+FH FGL
Sbjct:   198 KDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIA--EPFEQPQQTFICTVPLFHTFGL 255

Query:   251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS--LVRKFDI 308
                +   L  G  VV + +FD+   + A+EKYR T   +VPP+++ +   +  +++K+D+
Sbjct:   256 LNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMINKADQIMKKYDV 315

Query:   309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             S L+ V  G APL KE+ +   K  P   ++Q
Sbjct:   316 SFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQ 347

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 124/344 (36%), Positives = 183/344 (53%)

Query:     3 KSGYGRD-GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             KSG+     I+ S R P+ LP +    +  F+   S  +  K   +DA +   LSF +  
Sbjct:    24 KSGFCESTSIFYSKREPMALPPNQFLDVTSFIA--SQPHRGKTVFVDAVTGRRLSFPELW 81

Query:    62 SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
               V +V+     LG+ K +VV+I +PNSI FPI  L V+++GAI +TANP+ T  E+SKQ
Sbjct:    82 LGVERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEISKQ 141

Query:   122 VKDSNPKLVITVPELWDKV---KDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELS 178
             + DS P L  T  +L  K+    + NLP VL+                       +IE  
Sbjct:   142 IGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQSYGDRVKLVGR-LETMIETE 200

Query:   179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
              S + +    V Q D AALLYSSGTTG SKGV+L+H+N IA   ++ A++   G L+   
Sbjct:   201 PSESRVKQ-RVNQDDTAALLYSSGTTGTSKGVMLSHRNLIA---LVQAYRARFG-LEQRT 255

Query:   239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
             +C +PM H+FG        +  G  +V + KFD+   L A+E +R +   +VPPI++A+ 
Sbjct:   256 ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMV 315

Query:   299 K--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
                N +  K+D+SSL  V +G APL +E+ E   +N P   I Q
Sbjct:   316 NGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQ 359

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 118/345 (34%), Positives = 189/345 (54%)

Query:     3 KSGY-GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             +SG+   +  + S R P+ LP +PS  +  F+  +S ++  ++A IDA + ++L+F++  
Sbjct:     7 RSGFCNSNSTFYSKRTPIPLPPNPSLDVTTFI--SSQAHRGRIAFIDASTGQNLTFTELW 64

Query:    62 SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
               V  V+     +GI K  VVL+ +PNSI FP+  L V+++GAI +T NP+ T +E++KQ
Sbjct:    65 RAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQ 124

Query:   122 VKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSG 179
             +KDSNP L  T  +L  K+      LP VL+  +                   ++++   
Sbjct:   125 IKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLV-------EMMKKEP 177

Query:   180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD--HV 237
             S   + +  V Q D A LLYSSGTTG+SKGVI +H+N IA   M+       G  D    
Sbjct:   178 SGNRVKE-RVDQDDTATLLYSSGTTGMSKGVISSHRNLIA---MVQTIVNRFGSDDGEQR 233

Query:   238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 297
              +C +PMFH++GL+      L  G+ ++ + KF++   + AI KY+ T   +VPPI++A+
Sbjct:   234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query:   298 AKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
                +  +  K+D+SS+  V  G APL KE+ E   +  P   I Q
Sbjct:   294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQ 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 118/339 (34%), Positives = 189/339 (55%)

Query:     8 RDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKV 67
             + GIY S  P L LP DP+   V  LF  S  +    ALID+ +  S+S ++ + +V  +
Sbjct:    28 KTGIYTSKFPSLHLPVDPNLDAVSALF--SHKHHGDTALIDSLTGFSISHTELQIMVQSM 85

Query:    68 SHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126
             +    H LG+ + DVV +  PNS++FP+ FL +I++GAI +T NP  ++ E+ KQV + +
Sbjct:    86 AAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIKKQVSECS 145

Query:   127 PKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD 186
               L  T  E  +K+  L +  + +                    F+ +++ S     +P 
Sbjct:   146 VGLAFTSTENVEKLSSLGVSVISVSES-----YDFDSIRIENPKFYSIMKESFGF--VPK 198

Query:   187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMI--SAHQ-ELVGELDHVVLCVL 242
               +KQ D AA++YSSGTTG SKGV+LTH+N IA+  L +   A Q E  G   +V L  L
Sbjct:   199 PLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGS-SNVYLAAL 257

Query:   243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
             P+ H++GLS+ +   L  G+ +V M +FD    +  IE++++T + VVPP+++AL K + 
Sbjct:   258 PLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALTKKAK 317

Query:   303 VRKFDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
                 ++  SLK V SGAAPL ++ +ED  + +P   + Q
Sbjct:   318 GVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQ 356

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 120/343 (34%), Positives = 187/343 (54%)

Query:     3 KSGYGR-DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             +SG+ + +  + S R PL LP + S  +  F+  +S  +  K A IDA + + L+FS   
Sbjct:    13 RSGFCKSNSTFYSKRQPLSLPPNLSRDVTTFI--SSQPHRGKTAFIDAATGQCLTFSDLW 70

Query:    62 SIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
               V +V+    H +GI + DVVLI +PNSI  P+  L V+++GA+ +TAN + T  E+SK
Sbjct:    71 RAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNTSGEISK 130

Query:   121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGS 180
             Q+ DSNP LV T  +L  K+  + +  VL    D                  ++++   S
Sbjct:   131 QIADSNPTLVFTTRQLAPKLP-VAISVVLT---DDEVYQELTSAIRVVGILSEMVKKEPS 186

Query:   181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVL 239
                + D  V Q D A +LYSSGTTG SKGVI +H+N  A  +  IS + +     D + +
Sbjct:   187 GQRVRD-RVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKR----DDIFI 241

Query:   240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
             C +PMFH +GL       +  G+ VV + +F +   + A+EK+R T   + PP+++A+  
Sbjct:   242 CTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVAMIN 301

Query:   300 NS-LVR-KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             ++ L++ K+D+SSLK V  G APL KE+ E   +  P   I Q
Sbjct:   302 DADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQ 344

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 121/355 (34%), Positives = 196/355 (55%)

Query:     4 SGYG-RDGIYRSLRPPLVLPS-DPSFSMVHF----LFRNS--ASYSSKLA----LIDADS 51
             SG+  R GIY SLRP L LP  D   S   F    L ++S  A+    +     L+++ S
Sbjct:    15 SGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTYLVNSSS 74

Query:    52 DESLSFSQFKSIVIKVSHSFRHL--GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109
              ++L++ +    V  ++ S R     +  ++V  I +P+S+  P+ +L +++IG + S A
Sbjct:    75 GDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVVVSPA 134

Query:   110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXX 169
             NP+ + SE+S QV+ S P +     +   K++  +LP   LG+                 
Sbjct:   135 NPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLP---LGT-----------VLMDST 180

Query:   170 XFHDLIELSGSVTDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
              F   +  S S +  P  V V Q+D AA+L+SSGTTG  KGV+LTH+N IA++ +  +HQ
Sbjct:   181 EFLSWLNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAV--SHQ 238

Query:   229 ELVGE---LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
               + +    D V L  LP+FHVFG  +++   +  G  +V +G+F++E   +A+EKY+VT
Sbjct:   239 RTLQDPVNYDRVGLFSLPLFHVFGFMMMIR-AISLGETLVLLGRFELEAMFKAVEKYKVT 297

Query:   286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
                V PP+I+AL K+ L +K+D+ SL+ +G G APLGK++ E  ++  P   I Q
Sbjct:   298 GMPVSPPLIVALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQ 352

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0X9	4CLL7_ARATH	6, ., 2, ., 1, ., -	0.6352	0.9883	0.6213	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ACLL12	4-coumarate-coa ligase (544 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PAL	RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)						•	•		0.966
	PAL5	SubName- Full=Phenylalanine ammonia-lyase; (712 aa)						•	•		0.962
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)						•	•		0.947
	CCR	SubName- Full=Cinnamoyl CoA reductase; (339 aa)						•	•		0.947
	C4H3	SubName- Full=Trans-cinnamate 4-hydroxylase; (465 aa)						•	•		0.926
	C4H2	SubName- Full=Putative uncharacterized protein; (505 aa)						•	•		0.926
	C4H1	SubName- Full=Trans-cinnamate 4-hydroxylase; (505 aa)						•	•		0.903
	CAM1	RecName- Full=Caffeoyl-CoA O-methyltransferase 1; EC=2.1.1.104; AltName- Full=Trans-caffeoyl-Co [...] (248 aa)						•	•		0.903
	COMT1	SubName- Full=Caffeic acid 3-O-methyltransferase; (365 aa)						•	•		0.902
	gw1.8531.4.1	hypothetical protein (134 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-122
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-84
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	3e-82
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-74
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-63
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-59
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-59
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-58
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-50
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-45
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	4e-43
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	6e-40
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-39
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	5e-39
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-35
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-35
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-34
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-34
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	7e-33
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	8e-33
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-31
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-28
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-28
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-28
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-27
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	3e-27
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-26
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	6e-25
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-24
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-24
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-24
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-24
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	4e-24
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-24
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	9e-24
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-23
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-23
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-23
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-23
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-22
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-22
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	3e-21
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	3e-21
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-21
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-20
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-20
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-20
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	5e-20
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	6e-20
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	4e-19
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-19
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	7e-19
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-18
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	6e-18
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-17
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-17
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-17
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-17
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	4e-17
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-17
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	5e-17
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	6e-17
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-16
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	1e-16
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	1e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-16
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-16
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	4e-16
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-16
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	6e-16
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	7e-16
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	7e-16
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-15
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-15
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-15
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-15
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-15
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	7e-15
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	1e-14
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	1e-14
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-14
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	6e-14
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	9e-14
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-13
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-13
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	3e-13
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	5e-13
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	6e-13
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	7e-13
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	8e-13
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-12
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-12
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-11
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-11
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	5e-11
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	6e-11
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	6e-11
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	3e-10
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	4e-10
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	4e-10
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	8e-10
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	1e-09
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-09
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-09
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-09
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-09
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	4e-09
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-09
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	6e-09
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	6e-09
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	6e-09
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	9e-09
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-08
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	3e-08
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	4e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	4e-08
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-08
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-07
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-07
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-07
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-07
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	3e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-07
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	4e-07
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	1e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-06
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	1e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-06
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-06
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-06
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-06
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-06
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	3e-06
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	3e-06
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-06
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-06
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	5e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	8e-06
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	9e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-05
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-05
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	2e-05
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	2e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-05
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	5e-05
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	5e-05
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-05
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	7e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-04
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	1e-04
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	1e-04
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	1e-04
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-04
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-04
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	9e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	0.001
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	0.001
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	0.002
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.002
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	0.004
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	0.004

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  360 bits (925), Expect = e-122
 Identities = 145/321 (45%), Positives = 199/321 (61%), Gaps = 16/321 (4%)

Query: 21  LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKD 80
           +P D S      LF  ++ +  + ALIDA +  +L++++ + +V +++      G  K D
Sbjct: 1   IPKDLSLDSASLLF--ASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGD 58

Query: 81  VVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKV 140
           VVL+ +PNS+ FP+ FL V++ GA+ +TANP+YT +E++KQVKDS  KL IT  EL +K+
Sbjct: 59  VVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKL 118

Query: 141 KDLNL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY 199
             L L P VLL S D  S+                  L     + P V +KQ D AAL Y
Sbjct: 119 ASLALEPVVLLDSADDGSA-------------AIDDLLFADEPEPPVVVIKQDDVAALPY 165

Query: 200 SSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259
           SSGTTG SKGV+LTH+N IA    + A +    + + V LCVLPMFH++GL+VIL   L+
Sbjct: 166 SSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLR 225

Query: 260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAA 319
            G  VV M +FD+E  L AIEKY+VT   VVPPI+LAL K+ +V K+D+SSLK +GSGAA
Sbjct: 226 LGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAA 285

Query: 320 PLGKELMEDCQKNIPGATIFQ 340
           PLGKEL E  +   PG  + Q
Sbjct: 286 PLGKELAEAFRARFPGVELGQ 306

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  262 bits (671), Expect = 4e-84
 Identities = 129/301 (42%), Positives = 177/301 (58%), Gaps = 12/301 (3%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           ALIDAD+   L+F+      ++++   R LG+ + DVV + +PNSI FP  FLG +A G 
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGG 60

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV----SSSG 160
           I S ANP YT  EL+ Q+K S PKL+   P+  DKVK+    A  LG   ++    S+  
Sbjct: 61  IVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEA---AKELGPVVRIIVLDSAPD 117

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            + R   ++      E     T + D    + D AALLYSSGTTG+ KGV+L+HKN IA 
Sbjct: 118 GVLRIEDLLEPRLGAEDEFRPTPLID---GKDDTAALLYSSGTTGLPKGVMLSHKNIIAN 174

Query: 221 -SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI 279
            S +    +      + VVL  LP +H +GL+  L   L  G  V+ M KFD E  L+ I
Sbjct: 175 LSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLA-SLLCGATVIIMPKFDSETFLKLI 233

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           EKY+VT  ++VPPI +ALAK+ LV K+D+SSL+++ SGAAPL KEL E+ +K  P  TI 
Sbjct: 234 EKYKVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIK 293

Query: 340 Q 340
           Q
Sbjct: 294 Q 294

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  259 bits (663), Expect = 3e-82
 Identities = 121/338 (35%), Positives = 191/338 (56%), Gaps = 25/338 (7%)

Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P+     +  + F   + +S +  LID  +    +++  + +  +V+  
Sbjct: 9   IFRSKLPDIYIPNH--LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAG 66

Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              LGI + DVV++  PN   F + FLG    GA+ +TANP YT +E++KQ K S  KL+
Sbjct: 67  LHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLI 126

Query: 131 ITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV 189
           IT     DK+K L     V + + D              + F +L +   +  ++P+V +
Sbjct: 127 ITQSCYVDKLKGLAEDDGVTVVTID--------DPPEGCLHFSELTQADEN--ELPEVEI 176

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCVL 242
              D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V+LCVL
Sbjct: 177 SPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPNLYFHSDDVILCVL 231

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           PMFH++ L+ +L   L+ G  ++ M KF+I   L  I++++VT+   VPPI+LA+AK+ +
Sbjct: 232 PMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV 291

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           V K+D+SS+++V SGAAPLGKEL +  +  +P A + Q
Sbjct: 292 VEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQ 329

Length = 537

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  238 bits (610), Expect = 3e-74
 Identities = 123/337 (36%), Positives = 196/337 (58%), Gaps = 15/337 (4%)

Query: 10  GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSH 69
           GIY S  PP+ LPSDP+   V F+F +  +++   ALID+ +  S+S+S+ + +V  ++ 
Sbjct: 23  GIYSSKHPPVPLPSDPNLDAVSFIF-SHHNHNGDTALIDSSTGFSISYSELQPLVKSMAA 81

Query: 70  SFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
              H +G+ + DVVL+  PNS++FP+ FL V+++G I +T NP  ++ E+ K+V D +  
Sbjct: 82  GLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVG 141

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSG-LISRSSKIVSFHDLIELSGSVTDIPDV 187
           L  T PE  +K+  L +P +       V  +    S+  +   F++LI+       +P  
Sbjct: 142 LAFTSPENVEKLSPLGVPVIG------VPENYDFDSKRIEFPKFYELIKEDFDF--VPKP 193

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS---LMISAHQELVGELDHVVLCVLPM 244
            +KQ D AA++YSSGTTG SKGV+LTH+N IA     +   A Q      D+V L  LPM
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM 253

Query: 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-V 303
           FH++GLS+ +   L  G+ +V M +FD    ++ I++++VT + VVPPI++AL K +  V
Sbjct: 254 FHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV 313

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
               + SLK V  GAAPL  + ++D  + +P     Q
Sbjct: 314 CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQ 350

Length = 560

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  210 bits (536), Expect = 1e-63
 Identities = 103/320 (32%), Positives = 147/320 (45%), Gaps = 8/320 (2%)

Query: 24  DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
               ++   L R +     + ALI       L++ +      +++ + + LG+   D V 
Sbjct: 8   TAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVA 67

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           I  PNS  F I FL  +  GA+A   NP  T  EL+  + D+  K++IT  E    ++ +
Sbjct: 68  ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAV 127

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
                       V      +     ++   L    G   D     V   D A LLY+SGT
Sbjct: 128 ----AEALPVVLVVLLVGDADDRLPITLEALAA-EGPGPDADARPVDPDDLAFLLYTSGT 182

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG+ KGV+LTH+N +A +  I+A        D VVL  LP+FH+FGL V L   L  G  
Sbjct: 183 TGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGT 242

Query: 264 VV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVGSGAAP 320
           +V  S   FD E  L  IEKY+VTV   VP  +  L  N      D+SS L+LV SG AP
Sbjct: 243 LVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAP 302

Query: 321 LGKELMEDCQKNIPGATIFQ 340
           L  EL+E  ++      I +
Sbjct: 303 LPPELLERFEERFGPIAILE 322

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  198 bits (506), Expect = 1e-59
 Identities = 87/298 (29%), Positives = 138/298 (46%), Gaps = 39/298 (13%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
              L R +  +  + AL        L++++   +  + +   + LG+ K D V +  PN 
Sbjct: 2   ADLLERAARRFPDRPALTF--FGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNC 59

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL 149
             FPI + G++  GA+    NP+YT  EL  Q+ DS  K++I                  
Sbjct: 60  PQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA---------------- 103

Query: 150 LGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
                              +SF D +     +    ++S    D A L Y+ GTTGV KG
Sbjct: 104 -------------------ISFEDALASGAPLPLPVELS--PDDLAVLQYTGGTTGVPKG 142

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK 269
            +LTH+N +A    I+A  + + E +   L  LP+FH+FGL+V +   L+ G   V +  
Sbjct: 143 AMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPN 202

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
           F     L+ I++YR T++  VP +  AL  +   +K+D SSL+L  SG APL  E+ E
Sbjct: 203 FRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAE 260

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  199 bits (508), Expect = 2e-59
 Identities = 110/333 (33%), Positives = 186/333 (55%), Gaps = 19/333 (5%)

Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P     ++  F+ +++  Y+ K+A ++A + +++++ +      + + +
Sbjct: 14  IFRSRYPSVPVPDK--LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKA 71

Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
            R LG+ K  VV++  PN   + I  LG++A G + S ANP    SE+ KQ + +  KL+
Sbjct: 72  LRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLI 131

Query: 131 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS-V 189
           +T    + KVK L LP ++LG            +    V++ +L+E +    D  D   +
Sbjct: 132 VTNDTNYGKVKGLGLPVIVLGE----------EKIEGAVNWKELLEAADRAGDTSDNEEI 181

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHV 247
            QTD  AL +SSGTTG+SKGV+LTH+N +A   S + S   E++G++  V L ++P FH+
Sbjct: 182 LQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQV--VTLGLIPFFHI 239

Query: 248 FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD 307
           +G++ I    L+    VV M +F++   L A+    V+   +VPPIIL L KN +V +FD
Sbjct: 240 YGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFD 299

Query: 308 ISSLKL--VGSGAAPLGKELMEDCQKNIPGATI 338
           +S LKL  + + AAPL  EL+   +   PG  +
Sbjct: 300 LSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQV 332

Length = 546

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  193 bits (493), Expect = 2e-58
 Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 11/287 (3%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++ +      +++ + R LG+   D V I  PNS  + +  L V+  GA     +P    
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
             L+  ++DS  K++IT  EL  K+ ++ L  ++L +   V   G        +   D  
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGE------GLDLLDDE 114

Query: 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 235
            L+G+  + P   V   D A ++Y+SGTTG  KGV+LTH+N +A +  ++    L     
Sbjct: 115 LLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTP--G 172

Query: 236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRVTVWWVVPPI 293
             VL +LP+     +  I    L  G  +V + KF  D    L  IEKY+VTV + VP +
Sbjct: 173 DRVLLLLPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTL 231

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           +  L K    +K+D+SSL+LV SG  PL  EL+   ++   G  +  
Sbjct: 232 LRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVN 278

Length = 412

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  174 bits (444), Expect = 3e-50
 Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 14/291 (4%)

Query: 43  KLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
             A+I   +      L++   +  V +++++ + LG  K D V I+ PNS    I  L  
Sbjct: 26  DTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLAT 85

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSS 159
             IGAI +  +P  +   ++ ++ D  PK++I     +   K++ L        D V SS
Sbjct: 86  ARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDA----DAVLSS 141

Query: 160 GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA 219
            ++      + + + +E +          +   D   LLY+SGTTG  KG++ +H  ++ 
Sbjct: 142 VVVVP-RLGLWYDEAVEKAS--EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLV 198

Query: 220 ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG---KFDIEMAL 276
              + +     +   D           ++GL   ++  L  G   V       +  E   
Sbjct: 199 EHRLTAKFHGDLLPGD-RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLW 257

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
            A+EKY+VT++   P  +  L K  L   +D+SSL+++GS   PL  E  E
Sbjct: 258 EALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFE 308

Length = 528

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  161 bits (410), Expect = 2e-45
 Identities = 83/317 (26%), Positives = 140/317 (44%), Gaps = 18/317 (5%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           ++   L R +  +  K A +  D  + L++++  + V + + +   LGI K D V I+AP
Sbjct: 6   TLPELLARAARRFGDKEAYVFGD--QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAP 63

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKDLNL 145
           NS H+ I  LG +  GA+    N  YT  E +  +   + K +  +      D      L
Sbjct: 64  NSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRL 123

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
           PA  L       +      + K+ +F D +  +G   +     V   D A +L++SGTTG
Sbjct: 124 PA--LEHVVICETEEDDPHTEKMKTFTDFLA-AGDPAERA-PEVDPDDVADILFTSGTTG 179

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHV----VLCVLPMFHVFGLSVILYDQLQKG 261
             KG +LTH+       ++S   +    L        L   P FHVFG    +   L +G
Sbjct: 180 RPKGAMLTHRQ------LLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRG 233

Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++ +  FD +   R IE  R+TV    P +  +L ++      D+SSL+L  +GAA +
Sbjct: 234 ATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASM 293

Query: 322 GKELMEDCQKNIPGATI 338
              L+E  +  +    +
Sbjct: 294 PVALLERFESELGVDIV 310

Length = 513

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  155 bits (394), Expect = 4e-43
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++++    V +++++ R LG+ K D V +F  NS  +   +  V  IGA+    N     
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSGLISRSSKIV 169
            E++  + D+  ++V+   E    +  +   LP V    + G       +  +       
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGE----- 147

Query: 170 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 229
            + +L  L+ +        + + DAAA+LY+SGTTG  KGV+L+H+N    SL + A   
Sbjct: 148 -YEEL--LAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL- 203

Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
            +   D V L ++PMFHV    +  Y  L  G   V   +FD E  L  IE  RVT ++ 
Sbjct: 204 KLSRDD-VYLVIVPMFHVHAWGLP-YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFA 261

Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           VP I   L K       D SSL+LV  G A L   L+ + ++   G  + Q
Sbjct: 262 VPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE-KFGIDLVQ 311

Length = 521

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  147 bits (373), Expect = 6e-40
 Identities = 89/318 (27%), Positives = 149/318 (46%), Gaps = 29/318 (9%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS-HSFRHLGITKKDVVL 83
           P  S+ H L  ++  Y  K A++      ++S+ +      +++ +  +  G+ K D VL
Sbjct: 8   PETSLFHNLEVSARRYPDKTAIVFYGR--AISYRELLEEAERLAGYLQQECGVRKGDRVL 65

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           ++  NS  F I +  ++   A+    NP+    EL+  V DS  ++ I   EL  KV   
Sbjct: 66  LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPA 125

Query: 144 N----LPAVLLGS-KDKVSSSGLISRSSKIVSFHDLIELS-GSVTDI----------PDV 187
                L  V++    D + +   I+  + + +   L  L+ G V             P  
Sbjct: 126 VGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPH 185

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHK----NFIAASLMISAHQELVGELDHVVLCVLP 243
           +    D A L Y+SGTTGV KG + TH+    N + + L  ++  E       VVL VLP
Sbjct: 186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPE------SVVLAVLP 239

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
           +FHV G+   +   +  G  VV M ++D E A R IE+YRVT W  +P +++    +  +
Sbjct: 240 LFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGL 299

Query: 304 RKFDISSLKLVGSGAAPL 321
            + D+SSL+ +G G A +
Sbjct: 300 AERDLSSLRYIGGGGAAM 317

Length = 546

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  146 bits (370), Expect = 1e-39
 Identities = 106/336 (31%), Positives = 173/336 (51%), Gaps = 32/336 (9%)

Query: 18  PLVLPSDPSFSM--VH-FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL 74
           P  +PS  S+ +  +H ++ + ++ Y  K AL     D  ++FS F   V + ++  + L
Sbjct: 12  PEEIPSTISYDIQPLHKYVEQMASRYPEKKALHFLGKD--ITFSVFHDKVKRFANYLQKL 69

Query: 75  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
           G+ K D V I  PN     I + G +  G I    NP+YT  EL  Q+ DS  K+++ + 
Sbjct: 70  GVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLD 129

Query: 135 ELWDKVKD------------------LNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176
            ++ +V +                  L  P  LL    +   S L+ +    VS  + I 
Sbjct: 130 LVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVK----VSESETIH 185

Query: 177 LSGSVTDIPDVSVK-----QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           L  SV    +  V+     + D A L Y+ GTTG  KGV+LTHKN ++ +LM        
Sbjct: 186 LWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNC 245

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            E + VVL VLP FHV+G++ ++   + +G  +V + KFD++M   AI+K++VT++   P
Sbjct: 246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAP 305

Query: 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
            I +AL  + L++++DISS++   SG+APL  E+ E
Sbjct: 306 TIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQE 341

Length = 563

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  143 bits (364), Expect = 5e-39
 Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 50/299 (16%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L  N+A +  + A++D      L++ +  + V +++     LGI   D VL+  PN   F
Sbjct: 21  LAANAARHPDRTAVVDGP--RRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEF 78

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGS 152
            I +  +  +GAI   A P +   E+    + S  K  I                     
Sbjct: 79  VILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRF---------------- 122

Query: 153 KDKVSSSGLISRSSKIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
                            S  D   L+  +  ++PDV       A    S GTTG+ K + 
Sbjct: 123 -----------------SGFDYAALARELLEELPDV-------ALFQLSGGTTGLPKLIP 158

Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMG 268
            TH +++ ++   SA       LD   V L VLP  H F L S  L   L  G  VV   
Sbjct: 159 RTHNDYLYSAR-ASAE---ACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHH 214

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
               ++A   IE+ +VT   +VP ++    + +   + D+SSL+++  G APL  EL  
Sbjct: 215 PPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGGAPLSPELAR 273

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  133 bits (336), Expect = 2e-35
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 61/276 (22%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            +++++   +V +++   +  G+ K D V ++  NS  F I +  ++  GA+    NP+ 
Sbjct: 1   VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
             +EL   + DS  +++I   EL D        AV                         
Sbjct: 61  REAELEHILNDSGARVLIVGSELDD-------VAV------------------------- 88

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     IP             Y+SGTTG+ KG + TH+  +A     +A       
Sbjct: 89  ----------IP-------------YTSGTTGLPKGCMHTHRTVLAT----AAASAAWSG 121

Query: 234 LDH--VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
           L    V+L  LP+FHV G+   +   +  G  +V + ++D E A RAIE+YRVT W  + 
Sbjct: 122 LTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIV 181

Query: 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
            +++ L  +     +D+SSLK+VG G A L   + E
Sbjct: 182 TMVVDLLAHPRFADYDLSSLKVVGGGGAALPPAVAE 217

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  131 bits (331), Expect = 2e-35
 Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 2/146 (1%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A + Y+SGTTG  KG +LTH+N +     I+    L        L  +P+FHVFGL +
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL--TEGDRTLVPVPLFHVFGLVL 60

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 312
            +   L  G  +V M KFD   ALR IE+ R+T    VP + +AL ++    KFD+SSL+
Sbjct: 61  GVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLR 120

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATI 338
              SG AP+  EL+   ++  P A I
Sbjct: 121 TGISGGAPVPPELVRRIREEFPMAEI 146

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  129 bits (326), Expect = 1e-34
 Identities = 65/149 (43%), Positives = 88/149 (59%), Gaps = 4/149 (2%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +LY+SGTTG  KGV+L+H+N +A +  ++    L  E D V+L VLP+FHV G   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGL-TEGD-VLLSVLPLFHVVGGGS 58

Query: 253 ILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
            L   L  G  VV    F      L  IE+YRVTV + VP +  ALAK +  R +D+SSL
Sbjct: 59  GLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSL 118

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           +L+ SG  PL  EL+E  ++  PGA I +
Sbjct: 119 RLLISGGEPLSPELLERFEE-RPGAPILE 146

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  128 bits (324), Expect = 2e-34
 Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 4/148 (2%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +LY+SGTTG  KGV+LTH+N +A    ++A   +      V L   P++H  G   
Sbjct: 2   DPALILYTSGTTGRPKGVMLTHRNLLAN--AVNALAGVDLSPGDVYLLAAPLYHAAGGLF 59

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 312
           +L   L  G  VV M KFD E  L  IE++RVT  ++VP +   L +     ++D+SSL+
Sbjct: 60  LLP-ALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLR 118

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           L+  GAAP+  EL         G    Q
Sbjct: 119 LIIYGAAPMPAELKR-AMIEWFGPVFVQ 145

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  127 bits (321), Expect = 7e-33
 Identities = 93/322 (28%), Positives = 155/322 (48%), Gaps = 47/322 (14%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L + +A Y  + AL     D  +++++ +++    + +    G  K   V ++  N+  
Sbjct: 26  LLSKAAADYGPRPAL--EFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPD 83

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
            PI F G +  GA     +P+     LS ++ DS  +L+IT         DL   A LL 
Sbjct: 84  HPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLIT--------SDL---AALLP 132

Query: 152 SKDKVSSSGLISR---------------------SSKIVSFHDLIELSGSVTDIPDVSVK 190
              K    GL+ R                       +IV++ D ++ + +  + P  +V 
Sbjct: 133 MALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWP--AVT 190

Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD-------HVVLCVLP 243
             D A L Y+ GTTG+ KG +LTH N  +A   +S + ++ G+           V+CVLP
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSA---VSIY-DVWGKPSRATRGDVERVICVLP 246

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
           +FH++ L+VIL   L++G+ +    +FD+    R IE+ R TV+  VP + +ALA +  +
Sbjct: 247 LFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSL 306

Query: 304 RKFDISSLKLVGSGAAPLGKEL 325
            K D+SSL  +GSG APL  E+
Sbjct: 307 EKRDLSSLATIGSGGAPLPVEV 328

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  127 bits (322), Expect = 8e-33
 Identities = 87/337 (25%), Positives = 144/337 (42%), Gaps = 44/337 (13%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           ++V       A +  + AL     D    + ++++    V + +   R LG+   D V I
Sbjct: 33  TLVDLYDNAVARFGDRPAL-----DFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAI 87

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
             PN     + F  V+ +GA+    NP+YT  EL    +D   ++ I    +WDKV    
Sbjct: 88  VLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAI----VWDKVAPTV 143

Query: 145 LPAVLLGSKDKVSSSGLIS-----------------RSSK---------IVSFHDLIE-- 176
                    + + S  +I+                 R ++          V +  L++  
Sbjct: 144 ERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAA 203

Query: 177 --LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 234
               GS    P  +    D A +LY+SGTTG  KG  LTH+N  A +    A    +G+ 
Sbjct: 204 IGGDGSDVSHPRPT--PDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG 261

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
              VL  LPMFH +GL++ L   +  G  +V +   DI++ L A++K+  T    VPP+ 
Sbjct: 262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLY 321

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK 331
             +A+ +  R  D+S ++   SGA  L    +E  +K
Sbjct: 322 EKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEK 358

Length = 573

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  123 bits (310), Expect = 3e-31
 Identities = 87/315 (27%), Positives = 150/315 (47%), Gaps = 19/315 (6%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L R++  Y  K AL+  D   S ++++  + V +V+ +   LG+ K D V     NS  
Sbjct: 16  ILRRSARRYPDKTALVFGD--RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDA 73

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           + + +L     GA+    N + T  EL+  +  S  +  +  P L    +       LL 
Sbjct: 74  YALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAA---LALLP 130

Query: 152 SKDKVSSSGLISRSS--KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
               + S  L  R +    + F D  E +GSV + PDV +   D A +LY+SGT  + KG
Sbjct: 131 VDTLILSLVLGGREAPGGWLDFADWAE-AGSVAE-PDVELADDDLAQILYTSGTESLPKG 188

Query: 210 VILTHKNFIA--ASLMISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
            +LTH+  IA   S +++      G++  D + L  LP++H   L V L   L  G   V
Sbjct: 189 AMLTHRALIAEYVSCIVA------GDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNV 242

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            +   D E+ LR IE  R+T ++  P + ++L ++      D+SSL+    GA+ +  E+
Sbjct: 243 ILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEV 302

Query: 326 MEDCQKNIPGATIFQ 340
           +++ ++ +PG   + 
Sbjct: 303 LKELRERLPGLRFYN 317

Length = 523

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  113 bits (285), Expect = 4e-28
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 26/291 (8%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIA 101
           ++A+I    +E +++ Q    V KV+    + L + K + + I + NS+ + +    +  
Sbjct: 18  RIAIIT--EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAK 75

Query: 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL 161
           +  IA   N   T +EL  Q+KDS                      VL   K   + +  
Sbjct: 76  VECIAVPLNIRLTENELIFQLKDSGTT-------------------VLFVEKTFQNMALS 116

Query: 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL--YSSGTTGVSKGVILTHKNFIA 219
           + + S +     +  L        D  V++ ++A+ +  Y+SGTTG  KG +LT +N   
Sbjct: 117 MQKVSYVQRVISITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFW 176

Query: 220 ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI 279
            +L  +   +L      +VL  LP+FH+ G+ +  +  L  G  ++   KF+   AL  I
Sbjct: 177 NALNNTFAIDLTMHDRSIVL--LPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMI 234

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
           EK++VTV   VP I  AL   S     ++ S++   +G AP  +ELM +  
Sbjct: 235 EKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFI 285

Length = 496

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  113 bits (286), Expect = 4e-28
 Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 20/304 (6%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V+FL R+       K+AL   D   SL++ + +  V +  ++ R LGI +++ VL+   +
Sbjct: 7   VYFLDRHLNEGRGDKIALYYDD--GSLTYGELQEEVNRWGNALRELGIERENRVLLILLD 64

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP 146
           +  FP  F G I IGA+    N + T  +    + DS  ++++   ELW+ +K      P
Sbjct: 65  TPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDP 124

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
            +    +  +   G    +    S+  LI  + +  ++   +    D A  LYSSG+TG 
Sbjct: 125 HL----RHVIVVGGAGPGAL---SYAQLI--ATAAEELEAAATSADDMAFWLYSSGSTGR 175

Query: 207 SKGVILTHKNFIAASLMISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
            KGV+  H + +  +    A+ + V  +  D VV     +F  +GL   LY  L  G   
Sbjct: 176 PKGVVHLHHDMLVTA---EAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATT 232

Query: 265 VSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
           V M +    +     IE+Y+ TV++ VP +  A+       + D+SSL+L  S    L  
Sbjct: 233 VLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPA 292

Query: 324 ELME 327
           E+  
Sbjct: 293 EIGY 296

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (284), Expect = 8e-28
 Identities = 88/289 (30%), Positives = 138/289 (47%), Gaps = 30/289 (10%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIG 103
           A+I A S E +++ + ++   +++H  R LG+ + DVV I   N+   F + +    + G
Sbjct: 2   AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRS-G 60

Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS 163
              +  N   T +E++  V DS  K++I    L D   +L    +  G    +  +G + 
Sbjct: 61  LYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAEL-AAELPAGVPLLLVVAGPVP 119

Query: 164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LTHKNFIAAS 221
                 S+ + +  +   T I D    +T  A +LYSSGTTG  KG+   L   +   A 
Sbjct: 120 GFR---SYEEALA-AQPDTPIAD----ETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAP 171

Query: 222 LMISA--HQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMA 275
            M+ A     + G  D V L   P++H     FG+S      L  G  VV M KFD E A
Sbjct: 172 GMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSA-----LALGGTVVVMEKFDAEEA 226

Query: 276 LRAIEKYRVTVWWVVPPI---ILALAKNSLVR-KFDISSLKLVGSGAAP 320
           L  IE+YRVT   +VP +   +L L +   VR ++D+SSL++    AAP
Sbjct: 227 LALIERYRVTHSQLVPTMFVRMLKLPEE--VRARYDVSSLRVAIHAAAP 273

Length = 502

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  111 bits (279), Expect = 2e-27
 Identities = 71/292 (24%), Positives = 113/292 (38%), Gaps = 79/292 (27%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           +++++++    V +++     LG+   D V I A N   + I  L ++A GA+     P 
Sbjct: 4   QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63

Query: 113 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFH 172
            +  E++  + DS  ++V                                          
Sbjct: 64  SSPEEVAYILNDSGARVVF----------------------------------------- 82

Query: 173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 232
                   V D PD      D A L+Y+SGTTG  KGV+LTH+N +A     +A  E++ 
Sbjct: 83  --------VEDKPD------DLATLIYTSGTTGNPKGVMLTHRNLLA---QAAALLEVIP 125

Query: 233 -ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRVTVWWV 289
                 VL  LP+ HVF   +  Y  L  G  V     F    E  L  + + R TV++ 
Sbjct: 126 LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVN----FAESPETLLEDLREVRPTVFFA 181

Query: 290 VP--------PIILALAKNSLVRK--FD----ISSLKLVGSGAAPLGKELME 327
           VP         I   +A    +++  F        L+   SG APL  E++E
Sbjct: 182 VPRVWEKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLE 233

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  112 bits (281), Expect = 3e-27
 Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 17/250 (6%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           E++++ +    V  ++     LGI   D V IFA N   + I  L ++A+GA++      
Sbjct: 44  EAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYST 103

Query: 113 YTVSELSKQVKDSNPKLVIT-VPELWDKVKDLNLPAVLLGSKDKVSSS------GLISRS 165
            T  +L+  + +S  K++     EL D V  + L          V            +  
Sbjct: 104 STPEQLAYILNESESKVIFVENQELLDLVLPV-LEDCPKVVDLIVIIDLVREAVEAKALV 162

Query: 166 SKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 223
            ++     +         +       K  D A ++Y+SGTTG  KGV+LTH+N +A    
Sbjct: 163 LEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLA---Q 219

Query: 224 ISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEK 281
           ++   E++  +     VL  LP+ H+F  +      L  G  V+   K D    L  +++
Sbjct: 220 VAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF--KEDPRTLLEDLKE 277

Query: 282 YRVTVWWVVP 291
            R TV   VP
Sbjct: 278 VRPTVMIGVP 287

Length = 613

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  109 bits (274), Expect = 2e-26
 Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 18/305 (5%)

Query: 33  LFRNSASYSSKLALIDADSDESL---SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           +  ++A Y     ++    D S+   +++ F   V +++++   LG+   D V   A N+
Sbjct: 1   ILEHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNT 60

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---DKVKDLNLP 146
                 +  V  +GA+  T NP  +  +++  +  +  K++    +     + +    LP
Sbjct: 61  HRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAP-RLP 119

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
            V        +     S    + ++ +L+E      + P++   +  AA L Y+SGTTG 
Sbjct: 120 TVKAVVVYDDADMPETS-LPNVYAYEELLEEESPEYEWPELD--ENTAAGLCYTSGTTGN 176

Query: 207 SKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNC 263
            KGV+ +H++ +  +L  +    L + E D  VL V+PMFHV  +GL    Y     G  
Sbjct: 177 PKGVVYSHRSLVLHTLASALPDSLGLSESD-TVLPVVPMFHVNAWGLP---YAATMVGAK 232

Query: 264 VVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
           +V  G++      L  IE+ +VTV   VP I L L         D+SSL+ V  G + L 
Sbjct: 233 LVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSALP 292

Query: 323 KELME 327
           + L+E
Sbjct: 293 RSLIE 297

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  105 bits (264), Expect = 6e-25
 Identities = 76/316 (24%), Positives = 127/316 (40%), Gaps = 37/316 (11%)

Query: 46  LIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           L+DAD     E+ ++++  + V + ++    LG+   DVV    PN         G    
Sbjct: 47  LLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG---- 102

Query: 103 GAIASTANPVYTVSE---LSKQVKDSNPKLVITV-----PELWDKVKDL-----NLPAVL 149
           G  A  ANP+  + E   +++ ++ +  K+++T+      ++W KV ++      L  V+
Sbjct: 103 GEAAGIANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVV 162

Query: 150 L--GSKDKVSSSGLISRSS------KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
               ++       L           +I+ F   +             +   D AA  ++ 
Sbjct: 163 EVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTG 222

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG+ K    TH N +A + +      L       V C LP+FHV  L V     L +G
Sbjct: 223 GTTGMPKLAQHTHGNEVANAWLG--ALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARG 280

Query: 262 NCVV---SMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             VV     G     +       +E+YR+     VP +  AL +   V   DISSL+   
Sbjct: 281 AHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP-VDGHDISSLRYAL 339

Query: 316 SGAAPLGKELMEDCQK 331
            GAAPL  E+    + 
Sbjct: 340 CGAAPLPVEVFRRFEA 355

Length = 632

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  103 bits (260), Expect = 2e-24
 Identities = 87/296 (29%), Positives = 129/296 (43%), Gaps = 31/296 (10%)

Query: 43  KLAL--IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 100
           K+AL  +DA   E  ++ + K +  K ++  + LG+ K D V IF P         LG +
Sbjct: 60  KVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGAL 119

Query: 101 AIGAIAST------ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA---VLLG 151
             GAI            V        +++DS  K++IT P L ++    +LP+   VLL 
Sbjct: 120 KNGAIVGPLFEAFMEEAVRD------RLEDSEAKVLITTPALLERKPADDLPSLKHVLL- 172

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
             + V            + F+ L+E +    DI      + D A L Y+SG+TG  KGV+
Sbjct: 173 VGEDVEEGP------GTLDFNALMEQASDEFDIEW--TDREDGAILHYTSGSTGKPKGVL 224

Query: 212 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKF 270
             H   +      +    L    D V  C      V G S  I    L     V+  G+F
Sbjct: 225 HVHNAMLQH--YQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRF 282

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKE 324
             E   R +E Y+VTVW+  P  I  L  A + LV+K+D+SSL+ + S   PL  E
Sbjct: 283 SPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPE 338

Length = 570

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  101 bits (255), Expect = 2e-24
 Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D AA++Y+SG+TG  KGV+L+H+N  A +  I+ + EL    D  +L VLP    +GLS 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTE--DDRILAVLPFSFDYGLSQ 60

Query: 253 ILYDQLQKGNCVVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
           +L    + G  +V   +F      L+ + K R+T +  VP     L +   + + D  SL
Sbjct: 61  LLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSL 119

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIF 339
           + + +    L  + +   ++  P A +F
Sbjct: 120 RYLTNAGGALPAKTILQLRRAFPDAKLF 147

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  103 bits (260), Expect = 2e-24
 Identities = 86/344 (25%), Positives = 145/344 (42%), Gaps = 56/344 (16%)

Query: 17  PPLV---LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH 73
           PP V   + +    S+   L  +   Y+ + A I     +++++ +   +   ++   + 
Sbjct: 10  PPGVPAEIDASQYPSLADLLEESFRQYADRPAFICMG--KAITYGELDELSRALAAWLQS 67

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI-- 131
            G+ K   V I  PN + +P+    V+  G +    NP+YT  EL  Q+KDS  + ++  
Sbjct: 68  RGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVL 127

Query: 132 -----TVPELWDKVKDLNLPAVLLGSK-DKVSSSGLI-----SRSSKIV---------SF 171
                TV ++  K     +  V++ S  D +   G I      R  K+V          F
Sbjct: 128 ENFATTVQQVLAKT---AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRF 184

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +D +      T  P V +   D A L Y+ GTTGVSKG  L H+N +A  L + A  +  
Sbjct: 185 NDALAEGARQTFKP-VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPA 243

Query: 232 ----GELDHVV-LCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----------FDIEMAL 276
                  D +  +C LP++H+F L+V           ++ M             DI   +
Sbjct: 244 FEKKPRPDQLNFVCALPLYHIFALTV---------CGLLGMRTGGRNILIPNPRDIPGFI 294

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV-GSGAA 319
           + ++KY+V ++  V  +  AL  N    K D S L +  G G A
Sbjct: 295 KELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMA 338

Length = 557

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  102 bits (257), Expect = 3e-24
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 56/310 (18%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           + A+   +  + ++F +    V+ V+     LG+ K D V +   N +   +    +  +
Sbjct: 18  RTAIEFEE--KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQL 75

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA+A   N   +  EL  Q+ D+  K +IT  +   K+                      
Sbjct: 76  GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLI--------------------- 114

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFI 218
                 V F +L+          +  +++     + A ++Y+SGTTG  KGVI T+ N  
Sbjct: 115 --PGISVKFAELMN-----GPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHW 167

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRA 278
             S + SA    + E D   L  +P+FH+ GLS IL   +  G  VV + KFD E   + 
Sbjct: 168 -WSAVGSALNLGLTEDD-CWLAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKL 224

Query: 279 IEKYRVTVWWVVPPIILALAK-------NSLVRKFDISSLKLVGSGAAPLGKELMEDCQ- 330
           ++   VT+  VV  ++  L +        S  R        L+G G AP  K L+E C+ 
Sbjct: 225 LQTGGVTIISVVSTMLQRLLERLGEGTYPSSFRCM------LLGGGPAP--KPLLEQCKE 276

Query: 331 KNIPGATIFQ 340
           K IP   ++Q
Sbjct: 277 KGIP---VYQ 283

Length = 483

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  102 bits (256), Expect = 4e-24
 Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 5/269 (1%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           H L   +A      AL+  D   +L+++     V+ ++   R LG+ + + V I+    +
Sbjct: 4   HLLEDAAARLPDATALVHHD--RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRL 61

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
                  G    G +    NP+    +++  + D N +L++T  E  D +         L
Sbjct: 62  ETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDL 121

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
            +   V      S            +L       P   V  +D AA+LY+SG+TG  KGV
Sbjct: 122 RTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGV 181

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270
           +L+H+N +A +  ++ + E     D  +L VLP+   +G +  L      G  VV     
Sbjct: 182 VLSHRNLVAGAQSVATYLEN--RPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYL 238

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAK 299
                L+A+EK+ +T    VPP+   LA+
Sbjct: 239 LPRDVLKALEKHGITGLAAVPPLWAQLAQ 267

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  101 bits (255), Expect = 4e-24
 Identities = 66/277 (23%), Positives = 104/277 (37%), Gaps = 48/277 (17%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            L++ +      +++ +   LG+   DVV    PN   F + +L    IGA+ +   P+Y
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
              EL   ++ +  +++  VP+ +                                    
Sbjct: 61  RERELGFILRQARARVLF-VPDEFRGF--------------------------------- 86

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     +PD      D A LLY+SGTTG  KGV+ TH   +A          L   
Sbjct: 87  ------DYAAMPD------DVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP- 133

Query: 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
            D VVL   P+ H+ G    L   L  G  VV   ++D   AL  I ++ VT      P 
Sbjct: 134 -DDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPF 192

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
           +  L   +     D+ SL++   G AP+ +EL     
Sbjct: 193 LADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAA 229

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  101 bits (254), Expect = 9e-24
 Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 28/264 (10%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
           R  G+   D V +F PN   F I F G++ +GA+    +P++   ELS ++ D+  ++++
Sbjct: 76  RQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLL 135

Query: 132 TVPELWDKVKD----LNLPAVLLGSKDKVSSS-------GLISRSSKIVS-FHDLIE-LS 178
            + +L   V+      +L  V++ S   V  +         +       +   DL+  L 
Sbjct: 136 ALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALR 195

Query: 179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI---AASLMISAHQELVGELD 235
                +P         AAL Y+ GTTG+ KG   T ++ +   AA+  ++    +VG  D
Sbjct: 196 ACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGED 251

Query: 236 HVVLCVLPMFHV----FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            V L  LP F +    FGL   L+     G  +V + ++D    + A+E+YRVT   ++ 
Sbjct: 252 SVFLSFLPEFWIAGENFGLLFPLFS----GATLVLLARWDAVAFMAAVERYRVTRTVMLV 307

Query: 292 PIILALAKNSLVRKFDISSLKLVG 315
              + L  +    ++D+SSL+ V 
Sbjct: 308 DNAVELMDHPRFAEYDLSSLRQVR 331

Length = 567

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  101 bits (253), Expect = 1e-23
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 21/306 (6%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           A++    +   +  +F   V+ ++     LG+   DVV I A NS  +    L V   G 
Sbjct: 23  AVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGG 82

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVIT---VPELWDKVKDLNLPA----VLLGSKDKVS 157
           I +  N  ++  E    +    P +++T       ++++++  LP+    V L S     
Sbjct: 83  IVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV 142

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
              L S  +      ++++     T   D +    DA  + ++SGTTG  KGV ++H   
Sbjct: 143 FIFLNSFLTT-----EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSAL 197

Query: 218 IAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL 276
           I  SL   A   +VG   D V L   P+ H+ GLS  L   L  G C V + KFD + AL
Sbjct: 198 IVQSL---AKIAIVGYGEDDVYLHTAPLCHIGGLSSAL-AMLMVGACHVLLPKFDAKAAL 253

Query: 277 RAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333
           +AI+++ VT    VP +   +++L + S+  K   S  K++ +G   L   L+ D +K  
Sbjct: 254 QAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKIL-NGGGSLSSRLLPDAKKLF 312

Query: 334 PGATIF 339
           P A +F
Sbjct: 313 PNAKLF 318

Length = 563

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  101 bits (253), Expect = 1e-23
 Identities = 69/305 (22%), Positives = 126/305 (41%), Gaps = 32/305 (10%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           + FL R +  Y  + A++  D     ++ +      +++ +   LGI K DVV + APN+
Sbjct: 7   LSFLERAAKVYPDRTAVVYGDR--RYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNT 64

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL 149
                   GV   GA+    N      +++  +  S  K++    E     ++      L
Sbjct: 65  PAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEA---LAL 121

Query: 150 LGSKDKVSSSGLIS----RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
           L +K+ + +  ++       S+   + DL+   G    +P     + D  +L Y+SGTTG
Sbjct: 122 LSTKEIIDTEIIVISPAAEDSEEGDYEDLLA-GGDPDPLPIPPDDEWDPISLNYTSGTTG 180

Query: 206 VSKGVILTHKN-FIAASLMISAHQELVGELDH--VVLCVLPMFH------VFGLSVILYD 256
             KGV+ TH+  ++ A   +         +    V L  LPMFH       + ++ +   
Sbjct: 181 NPKGVVYTHRGAYLNALGNVIEW-----GMPDRPVYLWTLPMFHCNGWCFPWAITAV--- 232

Query: 257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVG 315
               G   V + K D       IEK++VT     P ++  LA      K  +   ++++ 
Sbjct: 233 ----GGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEADKLPLPRPVRVMT 288

Query: 316 SGAAP 320
           +GA P
Sbjct: 289 AGAPP 293

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  101 bits (253), Expect = 1e-23
 Identities = 86/311 (27%), Positives = 135/311 (43%), Gaps = 45/311 (14%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L R +A Y  + AL+  D     ++ +F   V  ++     LGI K D V I+APN   
Sbjct: 21  LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------------VPE 135
           + +       IGAI  T NP Y +SEL   +  S  K +I                  PE
Sbjct: 81  WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPE 140

Query: 136 LWD----KVKDLNLPA----VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD--IP 185
           L      +++   LP     + LG +          +   +++F +L+ L  +V D  + 
Sbjct: 141 LATCEPGQLQSARLPELRRVIFLGDE----------KHPGMLNFDELLALGRAVDDAELA 190

Query: 186 DV--SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 243
               ++   D   + Y+SGTTG  KG  LTH+N +     I    +L  E D + + V P
Sbjct: 191 ARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL-TEEDRLCIPV-P 248

Query: 244 MFHVFG--LSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
           ++H FG  L  +    +  G  +V  G  FD    L A+E+ R T  + VP + +A   +
Sbjct: 249 LYHCFGMVLGNL--ACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDH 306

Query: 301 SLVRKFDISSL 311
               +FD+SSL
Sbjct: 307 PDFARFDLSSL 317

Length = 559

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  100 bits (251), Expect = 2e-23
 Identities = 78/302 (25%), Positives = 128/302 (42%), Gaps = 23/302 (7%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           AL+        ++ Q    V +++     LG+   D V I+APN   + +       IGA
Sbjct: 36  ALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA 95

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPEL--WDKVKDLN--LPAVLLGSKDKVSSSG 160
           I    NP Y  SEL   +  S  + VI        D    L   LP +  G    ++   
Sbjct: 96  ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACER 155

Query: 161 L----------ISRSSKIVSFHDLIELSGSVTDIPDVSVKQT----DAAALLYSSGTTGV 206
           L           +     +++H+L     +V+       + +    D   + Y+SGTTG 
Sbjct: 156 LPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGF 215

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCV-LPMFHVFGLSVILYDQLQKGNCVV 265
            KG  L+H N +     ++   E +G  +H  LCV +P++H FG+ +     +  G C+V
Sbjct: 216 PKGATLSHHNILNNGYFVA---ESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLV 272

Query: 266 SMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
              + FD    L+A+E+ R T  + VP + +A   +     FD+SSL+      AP   E
Sbjct: 273 YPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIE 332

Query: 325 LM 326
           +M
Sbjct: 333 VM 334

Length = 558

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +L++SGTTG  KGV LTHKN +A++  I+   +L    D   L V+P+FH+ GL V
Sbjct: 3   DPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL-TPSDR-CLNVMPLFHIHGLIV 60

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL---AKNSLVRKFDIS 309
            L   L  G  VV   KF        I KYRVT +  VP I   L   AK +  +     
Sbjct: 61  SLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPP--P 118

Query: 310 SLKLVGSGAAPLGKELMEDCQKN 332
            L+ + S +APL   +++  +K 
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKR 141

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 97.9 bits (244), Expect = 2e-22
 Identities = 84/318 (26%), Positives = 125/318 (39%), Gaps = 39/318 (12%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L  ++A Y  ++A+ID +    LS+++      +++   R LGI   D VL+  PN   F
Sbjct: 34  LTDHAARYPDRIAVIDGE--RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEF 91

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT--VPELWDK--------VKD 142
            I F  ++ +G     A P +  SEL          L+I       +D          K 
Sbjct: 92  YITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKH 151

Query: 143 LNLPAVLL-GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
             L  V++ G  +  S           V    L   +G  T  P     +   A    S 
Sbjct: 152 PTLRHVIVAGEAEHPS-----------VLEAALCHPAGLFTPAPPADAGEV--AFFQLSG 198

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSVI-LYDQL 258
           GTTG  K +  TH ++  +   + A  E+ G  D   V LC LP  H F LS        
Sbjct: 199 GTTGTPKLIPRTHNDYYYS---VRASAEICG-FDQQTVYLCALPAAHNFPLSSPGALGVF 254

Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV       E+    IE++ VTV  +VPP+     + +   + D+SSL+L+  G 
Sbjct: 255 LAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGG 314

Query: 319 APLGKELME------DCQ 330
           A L   L         CQ
Sbjct: 315 ARLSATLARRVPAVLGCQ 332

Length = 542

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 77/292 (26%), Positives = 124/292 (42%), Gaps = 32/292 (10%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K A+I A + E +++ +      +++H FR LG+ + D V IF  N++ +          
Sbjct: 13  KPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERS 72

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVIT-------VPELWDKVKDLNLPAVLLGSKDK 155
           G   +  N   T +E +  V DS  + +IT          L  +   +    VL G  + 
Sbjct: 73  GLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGE- 131

Query: 156 VSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LT 213
                        V + + +      T I D    ++    +LYSSGTTG  KG+   L 
Sbjct: 132 ---------LEGFVGYAEAVA-GLPATPIAD----ESLGTDMLYSSGTTGRPKGIKRPLP 177

Query: 214 HKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDI 272
            +       + +  Q L G   D V L   P++H      ++    + G  V+ M  FD 
Sbjct: 178 EQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVI-RLGGTVIVMEHFDA 236

Query: 273 EMALRAIEKYRVTVWWVVPPI---ILALAKNSLVR-KFDISSLKLVGSGAAP 320
           E  L  IE+Y VT   +VP +   +L L +   VR K+D+SSL++    AAP
Sbjct: 237 EQYLALIEEYGVTHTQLVPTMFSRMLKLPEE--VRDKYDLSSLEVAIHAAAP 286

Length = 511

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 80/271 (29%), Positives = 128/271 (47%), Gaps = 28/271 (10%)

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
           LG+ K D V +  PN + +PI   G++  G I    NP+YT  EL  Q+ DS  K ++ V
Sbjct: 69  LGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIV 128

Query: 134 PE----LWDKVKDLNLPAVLLGSKDKVSSSG---LISRSSKIV-------------SFHD 173
                 L   V    +  V+L       S+    L++   K +             SF  
Sbjct: 129 SNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRS 188

Query: 174 LIELSGSVTDI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELV 231
            +     +  + P++     D A L Y+ GTTGV+KG +LTH+N +A       A+  L+
Sbjct: 189 ALHKGRRMQYVKPELV--PEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLL 246

Query: 232 GELDHVVLCVLPMFHVFGLSV--ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                +V+  LP++H+F L+V  +L+ +L   N +++  + DI   ++ ++KY  T    
Sbjct: 247 HPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPR-DIPGFVKELKKYPFTAITG 305

Query: 290 VPPIILALAKNSLVRKFDISSLKL-VGSGAA 319
           V  +  AL  N   ++ D SSLKL VG G A
Sbjct: 306 VNTLFNALLNNEEFQELDFSSLKLSVGGGMA 336

Length = 560

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 92.9 bits (231), Expect = 9e-21
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 32/292 (10%)

Query: 73  HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK---- 128
           H  +   D + +  PN + +P+   G +  G I    NP+YT  E+  Q  DS  K    
Sbjct: 69  HTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVC 128

Query: 129 --------------------LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
                               +V  V ++   +K L + AV+   K  V +  L     + 
Sbjct: 129 LANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL----PQA 184

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
           V F+D +   G+   + + + +  D A L Y+ GTTGV+KG +LTH+N +A  L   A  
Sbjct: 185 VKFNDALAK-GAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM 243

Query: 229 E-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKFDIEMALRAIEKYRVTV 286
              + E   +++  LP++H++  +      +  GN  ++     D+   ++ + K++ + 
Sbjct: 244 GSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG 303

Query: 287 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
           +  +  + +AL  N   RK D S+LKL  SG   L     E   K + G  I
Sbjct: 304 FVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAE-RWKEVTGCAI 354

Length = 562

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 91.8 bits (228), Expect = 2e-20
 Identities = 77/277 (27%), Positives = 116/277 (41%), Gaps = 31/277 (11%)

Query: 75  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
           G+   D VLI   N   F    L    +GAIA   N   T  E++  V D    +V+T  
Sbjct: 63  GVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEA 122

Query: 135 ELW-------DKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---SVTDI 184
            L        D V  L+   V  GS D             ++ + DL+  +G   +  DI
Sbjct: 123 ALAPVATAVRDIVPLLSTVVVAGGSSD-----------DSVLGYEDLLAEAGPAHAPVDI 171

Query: 185 PDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 243
           P+      D+ AL +Y+SGTTG  KG +LTH N    ++            D V    +P
Sbjct: 172 PN------DSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSD-VGFVGVP 224

Query: 244 MFHVFGL-SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           +FH+ G+ S++    L     +  +G FD    L  +E  +VT  ++VP    A+     
Sbjct: 225 LFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQ 284

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
            R  D+ +L+++  GAAP    L+       P A I 
Sbjct: 285 ARPRDL-ALRVLSWGAAPASDTLLRQMAATFPEAQIL 320

Length = 542

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 34/278 (12%)

Query: 72  RHL----GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127
           RHL    G+   D V +    S    +  L V+  GA     +P Y    L+  ++D+  
Sbjct: 14  RHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGA 73

Query: 128 KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 187
           +L++T   L  ++  L LP +LL   +  +                           PD 
Sbjct: 74  RLLLTDSALASRLAGLVLPVILLDPLELAALD------------------DAPAPPPPDA 115

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV 247
                D A ++Y+SG+TG  KGV++TH++    +L+    +    + D  VL        
Sbjct: 116 PSGPDDLAYVIYTSGSTGRPKGVVVTHRS--LVNLLAWLARRYGLDPDDRVLQFAS--LS 171

Query: 248 FGLSVI-LYDQLQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           F  SV  ++  L  G  +V       + D  +    I ++ VTV  + P ++  LA    
Sbjct: 172 FDASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA---A 228

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
                ++SL+LV  G   L   L++  +   PGA +  
Sbjct: 229 ALPPALASLRLVILGGEALTPALVDRWRARGPGARLIN 266

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 91.1 bits (226), Expect = 3e-20
 Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 39/314 (12%)

Query: 34  FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP 93
           F +  +Y S    I     + L   QF + ++        L + K D V +  PN + +P
Sbjct: 38  FADRPAYHSFGKTITYREADQLV-EQFAAYLLGE------LQLKKGDRVALMMPNCLQYP 90

Query: 94  ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK----DLNLPAVL 149
           I   GV+  G      NP+YT  EL  Q+ DS   +++ +      V+    D  +  V+
Sbjct: 91  IATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVI 150

Query: 150 ---LGSKDKVSSSGLIS-------------RSSKIVSFHDLIELSGSVTDIPDVSVKQTD 193
              LG       + L++             R +  + F + + L G    +P + ++  D
Sbjct: 151 TTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALAL-GRKHSMPTLQIEPDD 209

Query: 194 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-----ELDHVVLCVLPMFHVF 248
            A L Y+ GTTGV+KG +LTH+N +A   M  AHQ L G     E   VV+  LP++H+F
Sbjct: 210 IAFLQYTGGTTGVAKGAMLTHRNLVAN--MQQAHQWLAGTGKLEEGCEVVITALPLYHIF 267

Query: 249 GLSV--ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF 306
            L+   +++ ++   N ++S  + D+   ++ ++K R T +  V  +   L       + 
Sbjct: 268 ALTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQI 326

Query: 307 DISSLKL-VGSGAA 319
           D SSLK+ +G G A
Sbjct: 327 DFSSLKMTLGGGMA 340

Length = 560

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 90.7 bits (226), Expect = 5e-20
 Identities = 75/297 (25%), Positives = 117/297 (39%), Gaps = 56/297 (18%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D D +E+L++++       ++   + LG    D VL+ AP  + F   F G +  GAIA 
Sbjct: 17  DDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAV 75

Query: 108 TANP----VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS 163
            A P       ++ L+  + D+  + V+T   +   ++        L             
Sbjct: 76  PAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLL----------- 124

Query: 164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 223
               ++   D +    +  D         D A L Y+SG+TG  KGV++TH N +A    
Sbjct: 125 ----LLIAADDLAALAA-ADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRA 179

Query: 224 ISAHQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMA---- 275
           I+    L    D  V   LP++H    + GL   LY     G  VV M      +A    
Sbjct: 180 IARAFGL-DPDDVGVSW-LPLYHDMGLIGGLLQPLYA----GFPVVLMSP----LAFLRR 229

Query: 276 ----LRAIEKYRVTVWWVVPPIILALAKNSLVRK--------FDISSLKLVGSGAAP 320
               L AI +YR TV    P     L     VR+         D+SS ++  +GA P
Sbjct: 230 PLRWLEAISRYRATVSG-APNFAYDLC----VRRVRDEQLAGLDLSSWRVAFNGAEP 281

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 90.4 bits (225), Expect = 6e-20
 Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 27/298 (9%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           H L      Y  + AL+  D+   L++ Q    + +   +F  LG+   D V + + N  
Sbjct: 16  HLLVSALKRYPDRPALVLGDT--RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLN-- 71

Query: 91  HFPICFLGVIAIGA-----IASTA-NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                   ++AIGA     +  TA +P+ ++ + +  ++D+    +I      D    + 
Sbjct: 72  ----RPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIV-----DPAPFVE 122

Query: 145 LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGT 203
               LL     +     +      V   DL+  +      P V+     D A L Y+ GT
Sbjct: 123 RALALLARVPSLKHVLTLGPVPDGV---DLLAAAAKFGPAPLVAAALPPDIAGLAYTGGT 179

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG  KGV+ TH++    + +  A  E   +     L   P+ H  G        L +G  
Sbjct: 180 TGKPKGVMGTHRSIATMAQIQLAEWEWPADPR--FLMCTPLSHAGGAFF--LPTLLRGGT 235

Query: 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
           V+ + KFD    LRAIE+ R+T  ++VP +I AL  +  +R  D+SSL+ V  GA+P+
Sbjct: 236 VIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPM 293

Length = 524

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 87.3 bits (217), Expect = 4e-19
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A ++Y+SGTTG  KGV+LTH N  A +  +          D ++   LP+ HV GL  
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTAS-DVLLHA-LPLHHVHGLFN 146

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDIS 309
            L+  L  G  V  + +FD +         R+TV+  VP I   +L   +          
Sbjct: 147 ALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAAR 206

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATI 338
           +L+L  SG+A L   ++E  ++   G T+
Sbjct: 207 NLRLFVSGSAALPVPVLERWEE-RTGHTL 234

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 63/285 (22%), Positives = 118/285 (41%), Gaps = 27/285 (9%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D   SF +      + +     LG+   D V +   N   F       + +GA A   N 
Sbjct: 9   DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKI 168
            +   E++  ++DS  +++I   +L   +       +  + + +  +++++  IS +   
Sbjct: 69  HFKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLT 128

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDA-AALLYSSGTTGVSKGVILTHKNFIAASLMISAH 227
                 I+  G +               +++Y+SGTTG  KGV    +   A +   +A 
Sbjct: 129 PPAGA-IDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHPKGV----RRA-APTPEQAAA 182

Query: 228 QELVGELDH------VVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
            E +  L +        L   P++H     +GL        + G  +V   +FD E  L+
Sbjct: 183 AEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAG-----RLGGVLVLQPRFDPEELLQ 237

Query: 278 AIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAP 320
            IE++R+T   +VP + + L K    +  K+D+SSL+ V   AAP
Sbjct: 238 LIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAP 282

Length = 509

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 87.2 bits (216), Expect = 7e-19
 Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 33/297 (11%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
           +H  +   D + +  PN + +PI   G +  G I    NP+YT  E+  Q KDS  + ++
Sbjct: 68  QHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALV 127

Query: 132 TVPELWDKVKDLNLPAV----LLGSK-----------------DKVSSSGLISRSSKIVS 170
            +      V+++ LP      L+ +K                 DKV          + V 
Sbjct: 128 YLNMFGKLVQEV-LPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVP 186

Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--- 227
           F   +   G    +  V V   D A L Y+ GTTG++KG +LTH N +A  L + A    
Sbjct: 187 FKQALRQ-GRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 228 -----QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKFDIEMALRAIEK 281
                Q L+ E   V++  LP++H++  +      +  GN  V+     DI   ++ + K
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGK 305

Query: 282 YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
           +R +    +  + +AL  +   +  D S+LKL  SG   L K   E  ++ + G TI
Sbjct: 306 WRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTI 361

Length = 562

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 84.5 bits (210), Expect = 3e-18
 Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV-LCVLPM 244
           D+       A ++++SG+TG  K V+ T  N +A++       E +G       L  LP+
Sbjct: 71  DLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASAR---GSAENLGLTPDDNWLLSLPL 127

Query: 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP----IILALAKN 300
           FHV GL+ I+   L  G  +V   KFD E    A+E + VT   +VP     ++ +L   
Sbjct: 128 FHVSGLA-IVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGAR 186

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIP 334
            L      SSL+ V  G AP+   L+E   Q+ IP
Sbjct: 187 WL------SSLRAVLLGGAPIPPSLLEQARQRGIP 215

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 79/323 (24%), Positives = 124/323 (38%), Gaps = 27/323 (8%)

Query: 32  FLFRNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
            L    AS   K A+             ++ +  ++V +V+     LG+ + DVV    P
Sbjct: 29  DLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLP 88

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDK------VK 141
           N   F + +L    IGA+ +   P++   ELS  +K +  K+++ VP+ +         +
Sbjct: 89  NWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLV-VPKTFRGFDHAAMAR 147

Query: 142 DLN--LPA----VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
            L   LPA    V++G     S   L+   +          L+      PD      D  
Sbjct: 148 RLRPELPALRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARLRPG-PD------DVT 200

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            L+Y+SGTTG  KGV+ T    +A  +  +    L    D V+L   PM H  G    L 
Sbjct: 201 QLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA--DDVILMASPMAHQTGFMYGLM 258

Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             +  G   V    +D   A   I    VT      P +  L +        +SSL+   
Sbjct: 259 MPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFL 318

Query: 316 SGAAPLGKELMEDCQKNIPGATI 338
              AP+   L+E  +    GA I
Sbjct: 319 CAGAPIPGALVERARA-ALGAKI 340

Length = 547

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 83.3 bits (206), Expect = 1e-17
 Identities = 61/288 (21%), Positives = 109/288 (37%), Gaps = 52/288 (18%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++         ++ + +  GI     V +   NSI   +     + +GA  +  N   T 
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
           +E + Q++D + +L++T                          S L  +  +  S   + 
Sbjct: 61  NERTNQLEDLDVQLLLT-------------------------DSLLEEKDFQADSLDRI- 94

Query: 176 ELSGSVTDIPDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
                     + S+  +      A L+++SGTTG  K V  T +N   AS + S      
Sbjct: 95  ----EAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRN-HYASAVGSKENLGF 149

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            E D+ +L  LP++H+ GLS++    ++     +      +   L  I   RVT   +VP
Sbjct: 150 TEDDNWLL-SLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVP 205

Query: 292 PIILALAK----NSLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIP 334
             +  L      N  +RK       L+G  A P    L+E+  Q  +P
Sbjct: 206 TQLNRLLDEGGHNENLRKI------LLGGSAIPA--PLIEEAQQYGLP 245

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 83.3 bits (206), Expect = 1e-17
 Identities = 72/328 (21%), Positives = 123/328 (37%), Gaps = 62/328 (18%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           ALID   D  LS ++ +++V +++      G+ + D V ++ PN I + + FL    +GA
Sbjct: 28  ALID--EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDK--------- 155
                N  Y   E++  +     + ++    +W   K ++  A+L               
Sbjct: 86  TVIAVNTRYRSHEVAHILGRGRARWLV----VWPGFKGIDFAAILAAVPPDALPPLRAIA 141

Query: 156 -VSSSG------LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY-SSGTTGVS 207
            V  +             ++ +  D    + +     D      DA ALL+ +SGTT   
Sbjct: 142 VVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADP-----DAGALLFTTSGTTSGP 196

Query: 208 KGV------ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           K V      +L H   IA +               V+L  LP   VFG S +L   L  G
Sbjct: 197 KLVLHRQATLLRHARAIARAYGYDP--------GAVLLAALPFCGVFGFSTLL-GALAGG 247

Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--------DISSLKL 313
             +V    FD     RA+ ++RVT              + ++R+         D  S +L
Sbjct: 248 APLVCEPVFDAARTARALRRHRVT---------HTFGNDEMLRRILDTAGERADFPSARL 298

Query: 314 VGSGA-APLGKELMED-CQKNIPGATIF 339
            G  + AP   EL      + +P   ++
Sbjct: 299 FGFASFAPALGELAALARARGVPLTGLY 326

Length = 540

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 82.2 bits (204), Expect = 2e-17
 Identities = 73/323 (22%), Positives = 121/323 (37%), Gaps = 45/323 (13%)

Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +AL+  D    L++++ +    +++H     G+   D V I+A N I +    LG     
Sbjct: 20  VALVCGD--RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR 77

Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLPAVLL------GSKDK 155
           A+    N  Y   EL   + DS+   ++   E   +V ++   LP +        GS + 
Sbjct: 78  AVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND 137

Query: 156 VSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           +            V + D +       D  + S    D   LLY+ GTTG+ KGV+   +
Sbjct: 138 LLPGA--------VDYEDALAAGSPERDFGERS---PDDLYLLYTGGTTGMPKGVMWRQE 186

Query: 216 NFIAASL---------MISAHQELVGELDH----VVLCVLPMFHVFGLSVILYDQLQKGN 262
           +     L          I   +EL                P+ H  G        L  G 
Sbjct: 187 DIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAA-LFSGQ 245

Query: 263 CVV--SMGKFDIEMALRAIEKYRVTVWWVV-----PPIILALAKNSLVRKFDISSLKLVG 315
            VV     +FD +   R IE+ +V V  +V      P++ AL        +D+SSL  + 
Sbjct: 246 TVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEAR---GPYDLSSLFAIA 302

Query: 316 SGAAPLGKELMEDCQKNIPGATI 338
           SG A     + E   + +P   +
Sbjct: 303 SGGALFSPSVKEALLELLPNVVL 325

Length = 533

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 82.2 bits (203), Expect = 3e-17
 Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 14/299 (4%)

Query: 30  VHFLFRN-SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
              L RN       K A ID  S  SLS+ + ++ V ++  + R LG+ +++ VL+   +
Sbjct: 7   EDLLDRNVVEGRGGKTAFIDDIS--SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLD 64

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
            + FPI FLG I  G +    N + T  + +  ++DS  ++V    EL   +K       
Sbjct: 65  GVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKA------ 118

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL-LYSSGTTGVS 207
            LG    +     +           L EL  + ++    +  Q D  A  LYSSG+TG+ 
Sbjct: 119 ALGKSPHLEH--RVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMP 176

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267
           KGV+ TH N    +  + A   L    D VV     +F  +GL   L   +  G   V M
Sbjct: 177 KGVVHTHSNPYWTA-ELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLM 235

Query: 268 GKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
           G+     A+   + +++ T+++ VP +  A+  +  +   D   L+L  S    L  E+
Sbjct: 236 GERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEV 294

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 70/274 (25%), Positives = 120/274 (43%), Gaps = 34/274 (12%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D+ +S+++F   +++ +      GI + DVV +   NS  F         +GA+    N 
Sbjct: 25  DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINY 84

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                E++  + D+  KL++ V E +D +  L  P +++ +  +  S  L          
Sbjct: 85  RLAADEVAYILGDAGAKLLL-VDEEFDAIVALETPKIVIDAAAQADSRRLAQ-------- 135

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI------AASLMIS 225
                  G +   P  +V  TD   L+Y+SGTT   KGV+ ++ N          +L ++
Sbjct: 136 -------GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLT 188

Query: 226 AHQEL--VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 283
           A + L  VG L HV    LP     G++V     L  G  +    +FD E  L AIE++R
Sbjct: 189 ASERLLVVGPLYHVGAFDLP-----GIAV-----LWVGGTLRIHREFDPEAVLAAIERHR 238

Query: 284 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSG 317
           +T  W+ P ++  +       +FD+ SL     G
Sbjct: 239 LTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGG 272

Length = 497

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 22/272 (8%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L R +  Y  +  L+        ++++        +H+    G+ + D V +   N I F
Sbjct: 27  LARQAERYPDRPLLVFGG--TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEF 84

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK-----DLNLPA 147
              FLG   +GAIA   N      +L   +++S  +L++    L   ++     DL LPA
Sbjct: 85  LDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPA 144

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
           V L   D  +S  + +             L       P  +V+  D AA+LY+SGTTG S
Sbjct: 145 VWL--LDAPASVSVPAG-------WSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267
           KGV   H  F       SA    +G  D V+   LP+FH   L+   +  L  G   V  
Sbjct: 196 KGVCCPHAQFYWWGRN-SAEDLEIGA-DDVLYTTLPLFHTNALNA-FFQALLAGATYVLE 252

Query: 268 GKFDIEMALRAIEKYRVTVWWVV---PPIILA 296
            +F       A+ ++  TV +++     I+L+
Sbjct: 253 PRFSASGFWPAVRRHGATVTYLLGAMVSILLS 284

Length = 542

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 81.4 bits (201), Expect = 5e-17
 Identities = 66/301 (21%), Positives = 110/301 (36%), Gaps = 21/301 (6%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L   +A Y   +A+I  +     S+ +       ++     LGI + D  ++  PN   
Sbjct: 28  ILRDQAARYPDAIAIICGN--RQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAE 85

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F I F  ++ +G     A   +  SEL+       P L I    +       +       
Sbjct: 86  FYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYI----IDRAHSLFDYDDFARQ 141

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
            + K+ +   I  + +       + L      +     K  + A    S G+TG  K + 
Sbjct: 142 LQSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIP 201

Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
            TH ++   S+  S     +  L      LC LP  H + LS      + Y     G CV
Sbjct: 202 RTHNDYYY-SVRRSVE---ICWLTQQTRYLCALPAAHNYPLSSPGALGVFY----AGGCV 253

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           V             IE+++VTV  +VPP +    + +   + D+SSLKL+  G A     
Sbjct: 254 VLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGGAKFSAA 313

Query: 325 L 325
            
Sbjct: 314 A 314

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 81.5 bits (202), Expect = 6e-17
 Identities = 70/337 (20%), Positives = 129/337 (38%), Gaps = 56/337 (16%)

Query: 33  LFRNSASYSSKLALIDADSDES---LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           L R++ +     A+  A  D     +S+++ +S V +++ + R LG+   D V  + PN 
Sbjct: 64  LLRHADN--DPAAIYAAGEDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNV 121

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKV 140
               I  L   +IGAI S+ +P + V  +  +     PK++  V             +K+
Sbjct: 122 PEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKI 181

Query: 141 KDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
            ++     +L AV++     +SS    +                    +    +      
Sbjct: 182 AEIVKGLPSLEAVVV--VPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPL 239

Query: 196 ALLYSSGTTGVSK-------GVILTHKNFIAASLMISAHQELVGELDHVVL---CVLPMF 245
            +LYSSGTTG+ K       G +L H            H +L    D +         M+
Sbjct: 240 WILYSSGTTGLPKCIVHGAGGTLLQHLK------EHGLHCDL-RPGDRLFYYTTTGWMMW 292

Query: 246 H------VFGLSVILYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALA 298
           +      + G +++LYD    G+       +     L R   K  +T++      + AL 
Sbjct: 293 NWLVSGLLSGATLVLYD----GS-----PLYPDPDVLWRLAAKLGITIFGTSAKYLDALE 343

Query: 299 KNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNI 333
           K  +   R  D+SSL+ + S  +PL  E  +    ++
Sbjct: 344 KAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 66/303 (21%), Positives = 129/303 (42%), Gaps = 15/303 (4%)

Query: 35  RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI 94
           + + +   K+A++D +   S ++S       ++++     GI   D V    P    F I
Sbjct: 31  QTARAMPDKIAVVD-NHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTI 89

Query: 95  CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKD 154
            +L  + +GA++    P +  +EL   +     K+    P L+ + + ++L   +L  ++
Sbjct: 90  IYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA-PTLFKQTRPVDL---ILPLQN 145

Query: 155 KVSSSGLISRSSKIVSFHDLIELSGSVTDIP----DVSVKQTDAAALLYSSGTTGVSKGV 210
           ++     I    K+      + LS  + D       ++    + AA+L++SGT G+ KGV
Sbjct: 146 QLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGV 205

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270
           +LTH N +A+     A   L      V +   P+ H  G    +      G   V +  F
Sbjct: 206 MLTHNNILASERAYCARLNLTW--QDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIF 263

Query: 271 DIEMALRAIEKYRVTVWWVV--PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
             +  L  +E+ R T   ++   P I  L      +  D+S+L+    G   + K++  +
Sbjct: 264 TPDACLALLEQQRCT--CMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARE 321

Query: 329 CQK 331
           CQ+
Sbjct: 322 CQQ 324

Length = 547

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 80/316 (25%), Positives = 138/316 (43%), Gaps = 33/316 (10%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+  +   K+A+I    +      +++ +    V + ++  + LG+ K D V I+ P   
Sbjct: 65  RHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIP 124

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV-- 148
              I  L    IGAI S     ++   L+ ++ D+  KLVIT  E     K + L A+  
Sbjct: 125 EAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVD 184

Query: 149 --LLGSKDKVSSSGLISRS-SKI-------VSFHDLIELSGSVTDIPDVSVKQTDAAALL 198
             L      V    ++ R+ + +       V +HDL+    +        +   D   +L
Sbjct: 185 EALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWHDLMA--KASAYCEPEPMDSEDPLFIL 242

Query: 199 YSSGTTGVSKGVILTHKNFIAASLMISAH--QELVGEL--DHVVLCVLPMFHVFGLSVIL 254
           Y+SG+TG  KGV+ T         ++ A    + V ++    +  C   +  + G S I+
Sbjct: 243 YTSGSTGKPKGVLHT-----TGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIV 297

Query: 255 YDQLQKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAK--NSLVRKFDI 308
           Y  L  G   V+  G        R    IEK++VT+++  P  I AL +  +  V+K D+
Sbjct: 298 YGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDL 357

Query: 309 SSLKLVGSGAAPLGKE 324
           SSL+L+GS   P+  E
Sbjct: 358 SSLRLLGSVGEPINPE 373

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 77/304 (25%), Positives = 116/304 (38%), Gaps = 36/304 (11%)

Query: 36  NSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95
            +     + ALID     +L++++       ++     LG+   D V + A N   F + 
Sbjct: 58  AARRAPDRAALID--ERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLA 115

Query: 96  FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP--AVLLG 151
                 +GA     N  ++  +L++       K ++   E  D +  L  +L       G
Sbjct: 116 LYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGG 175

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
           + D    SG     S   +  DLI   GS T       K      ++ +SGTTG  KG  
Sbjct: 176 NPDDDEPSG-----STDETLDDLIA--GSSTAPLPKPPKP--GGIVILTSGTTGTPKGAP 226

Query: 212 LTHKNFIAASLMISAHQELVGELDHV-------VLCVLPMFHVFGLSVILYDQLQKGNCV 264
                        S    L G L  V        L   PMFH  G + +    +  G+ V
Sbjct: 227 RPE---------PSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTL-AMALGSTV 276

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPL 321
           V   +FD E  L  I K++ T   VVP +   IL L    L  K+D SSLK++    + L
Sbjct: 277 VLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA-KYDTSSLKIIFVSGSAL 335

Query: 322 GKEL 325
             EL
Sbjct: 336 SPEL 339

Length = 549

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 70/303 (23%), Positives = 131/303 (43%), Gaps = 27/303 (8%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           HFL + +  +  ++AL+  D   S ++ +  + V  ++ +    G+ K D +L+ + N  
Sbjct: 11  HFLRQAARRFPDRIALVWGD--RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCN 68

Query: 91  H-FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI---TVPELWDKVKDLNLP 146
             F   F     +GA+    N   T  E++   + S  + +I     PE        +  
Sbjct: 69  QMFESMF-AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE--------HAA 119

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
           AV   S D ++    I  +   + +  L+        + + +V   D     ++SGTTG 
Sbjct: 120 AVRAASPD-LTHVVAIGGARAGLDYEALVA-RHLGARVANAAVDHDDPCWFFFTSGTTGR 177

Query: 207 SKGVILTHKNFIAASLMISAH-QELVGELDH--VVLCVLPMFHVFGLSVILYDQLQKGNC 263
            K  +LTH      + +I+ H  +L+         L V P+ H  G+  +   Q+ +G  
Sbjct: 178 PKAAVLTHGQM---AFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC--QVARGAA 232

Query: 264 VVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            V +   +FD       +E++RVT  + VP I+  L ++  V ++D SSL+ V    AP+
Sbjct: 233 TVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPM 292

Query: 322 GKE 324
            + 
Sbjct: 293 YRA 295

Length = 528

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 34/299 (11%)

Query: 49  ADSDE-SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           ADS   SL++ +  +  + +S   + L   + + + I  P+S+   +  L ++  G +  
Sbjct: 1   ADSTGGSLTYRKLLTASLALSRLIKKL-TKEGENIGIMLPSSVAGALANLALLLAGKVPV 59

Query: 108 TANPVYTVSE--LSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL---I 162
             N  +T  E  L    K +  K VIT     +K+K L    VLL     V    L   I
Sbjct: 60  MLN--FTAGEEGLRSACKQAGIKTVITSRAFLEKLK-LEGLVVLLEGVRIVYLEDLRAKI 116

Query: 163 SRSSKIVSFHDLIELSGSVTD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI 218
           S++ K+ +F     L+  +      +     K  D A +L++SG+ G+ KGV+L+H+N +
Sbjct: 117 SKADKLKAF-----LAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF------DI 272
           A    I+A  +L    + V+L  LP+FH FGL+V L   L  G     +         D 
Sbjct: 172 ANIDQIAAVIDLNT--EDVLLGALPLFHAFGLTVTLLLPLLTG-----LRVVYYPNPLDA 224

Query: 273 EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK 331
           +     I  Y+ T+    P  +   A+N+     D SSL+LV +GA  L +   E  ++
Sbjct: 225 KKIAELIRDYKATILCGTPTFLRGYARNA--HPEDFSSLRLVVAGAEKLPEATRELFEE 281

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 31/228 (13%)

Query: 38  ASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL 97
           A +  + AL+    D+S+S+++  +   + +H     G+ K DVV +   N   +   +L
Sbjct: 48  ARHPDRPALLF--EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL 105

Query: 98  GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---DKVKDLNLPAV---LLG 151
           G+  +GA+ +  N     + L+  +   + K +I   EL    ++ +          + G
Sbjct: 106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAG 165

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSV-TDIPDVSVKQT--DAAALLYSSGTTGVSK 208
                   G            DL   +    T  P      T  D A  +Y+SGTTG+ K
Sbjct: 166 GDTLDDPEGYE----------DLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPK 215

Query: 209 GVILTHKNFIAA----SLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
             +++H  ++ A      ++          D V+ C LP++H  G +V
Sbjct: 216 AAVMSHMRWLKAMGGFGGLLRLTP------DDVLYCCLPLYHNTGGTV 257

Length = 600

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 54/276 (19%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S+ + K +  + ++    LG+ K + V    P S    +  LG + +GA+       + 
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
              +  +++    K++IT PEL+++                                   
Sbjct: 61  PEPIRDRLELGEAKVLITTPELYER----------------------------------- 85

Query: 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 234
                  TD P+      D A L ++SGTTG  KGV+  H+  +A     +A   L    
Sbjct: 86  -------TD-PE------DPALLHFTSGTTGKPKGVLHVHRAVVAHY--ATARYVLDLRP 129

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
           D V  C      V G S  +   L  G   VV  G+FD E     +E+ +VTVW+  P  
Sbjct: 130 DDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTA 189

Query: 294 ILALAK--NSLVRKFDISSLKLVGSGAAPLGKELME 327
           +  L +    L  ++D+SSL+ + S   PL  E++ 
Sbjct: 190 LRMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVV 225

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 78.0 bits (193), Expect = 6e-16
 Identities = 66/307 (21%), Positives = 111/307 (36%), Gaps = 69/307 (22%)

Query: 38  ASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL 97
           A +  + AL+     ++L++++ K    +++     LG    D V ++   S       L
Sbjct: 2   AKHPDRPALVVGG--DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59

Query: 98  GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
             +  GA        Y                   VP       D + PA          
Sbjct: 60  ACLKAGA-------AY-------------------VP------LDPSQPA---------- 77

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
                 R +KI+   +    +  V D         D A +L++SG+TG  KGV ++H N 
Sbjct: 78  -----ERIAKIL---EAAGPAALVAD-------PDDLAYILFTSGSTGKPKGVQISHANL 122

Query: 218 IA-ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMA 275
            +    M+      + E D V     P F  F LSV  L+  L  G  +  + K  I   
Sbjct: 123 ASFLDWMVEDFD--LTEGD-VFSNQAP-FS-FDLSVFDLFPALASGATLYVIPKEQIADP 177

Query: 276 L---RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN 332
           L     ++++ +TVW  VP     L  +  +    + SL+        L K+L +  ++ 
Sbjct: 178 LALFEFLKEHGLTVWVSVPSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRR 237

Query: 333 IPGATIF 339
            P A I 
Sbjct: 238 FPNARII 244

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 78.4 bits (194), Expect = 7e-16
 Identities = 79/323 (24%), Positives = 135/323 (41%), Gaps = 43/323 (13%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
            +       +    S+LA+ D+   E LS+ +  +  + ++   +   +  ++ V I  P
Sbjct: 616 PLAEAWIDTAKRNWSRLAVADSTGGE-LSYGKALTGALALARLLKRE-LKDEENVGILLP 673

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSE--LSKQVKDSNPKLVIT----VPELWDKVK 141
            S+   +  L ++  G +    N  YT SE  L   ++ +  K VIT    + +L +K  
Sbjct: 674 PSVAGALANLALLLAGKVPVNLN--YTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGF 731

Query: 142 DLNLP----AVLL-------GSKDKVSSSGLI----SRSSKIVSFHDLIELSGSVTDIPD 186
           DL LP     + L          DK+++        +R  K +                 
Sbjct: 732 DLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARLLKRLYGPT------------- 778

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
              K  D A +++SSG+ G  KGV+L+H N ++    IS         D V+L  LP FH
Sbjct: 779 --FKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQIS--DVFNLRNDDVILSSLPFFH 834

Query: 247 VFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
            FGL+V L+  L +G  VV      D     + + K+R T+    P  +    +N  +  
Sbjct: 835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHP 894

Query: 306 FDISSLKLVGSGAAPLGKELMED 328
              +SL+LV +GA  L  E+ + 
Sbjct: 895 LMFASLRLVVAGAEKLKPEVADA 917

Length = 1146

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 78.0 bits (192), Expect = 7e-16
 Identities = 72/307 (23%), Positives = 135/307 (43%), Gaps = 15/307 (4%)

Query: 30  VHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V  + R +A+ +    AL+D      L++S+ ++ V  V+      G+  +  V + APN
Sbjct: 3   VFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPN 62

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+   I  L +  +GA+ +  NP    +E+++ +K       +   +         + A+
Sbjct: 63  SVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVD------AQVMDAI 116

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                   S   +++    +     L E   +   I D   +    A + Y+SGTTG+ K
Sbjct: 117 ----FQSGSGVRVLALGDLV----GLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPK 168

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
           G ++  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 169 GAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVE 228

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
           +FD   AL+ IE+ RVT  +  P  + ALA  +      + SL+ V    A +   ++E 
Sbjct: 229 EFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATMPDAVLER 288

Query: 329 CQKNIPG 335
             +++PG
Sbjct: 289 VNQHLPG 295

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 66/268 (24%), Positives = 109/268 (40%), Gaps = 21/268 (7%)

Query: 40  YSSKLALI--DADSD-ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF 96
           Y  K ALI   +       S+ +    + + ++ F  LGI K D V +   N   F  C+
Sbjct: 20  YGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCW 79

Query: 97  LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV 156
            G+  IGAI    N      E +  +++S   L++T  +         +   +       
Sbjct: 80  FGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQF------YPMYRQIQQEDATP 133

Query: 157 SSSGLISRS-----SKIVSFHDLI-ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
                ++R        + SF  L  +   ++   P +S    D A +L++SGTT   KGV
Sbjct: 134 LRHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTD--DTAEILFTSGTTSRPKGV 191

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV-FGLSVILYDQLQKGNCVVSMGK 269
           ++TH N   A    SA Q  + + D V L V+P FH+    +  +      G   V + K
Sbjct: 192 VITHYNLRFAGYY-SAWQCALRD-DDVYLTVMPAFHIDCQCTAAM-AAFSAGATFVLLEK 248

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILAL 297
           +        + KYR T+   +P +I  L
Sbjct: 249 YSARAFWGQVCKYRATITECIPMMIRTL 276

Length = 517

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 68/294 (23%), Positives = 117/294 (39%), Gaps = 63/294 (21%)

Query: 49  ADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST 108
             + E  +F Q K    +++++ R LG+ + D V ++ P S    I  L V  +GA++  
Sbjct: 1   DGTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVP 60

Query: 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
            + ++    +  +++DS  +++                                      
Sbjct: 61  LSVLFGPDAVEHRLRDSGARVL-------------------------------------- 82

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
                       VTD  D      D A L+Y+SGTTG  KG +  H+  +     +  + 
Sbjct: 83  ------------VTDGSD------DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYF 124

Query: 229 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTV 286
           EL      V         + GL  +L   L  G  VV+  M +FD E A   + +Y VT 
Sbjct: 125 ELAPRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTN 184

Query: 287 WWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
            + +PP  L +     S   ++D+  L+ V SG   LG+EL+E  +  + G T+
Sbjct: 185 AF-LPPTALKMMRRVGSERARYDL-RLRAVASGGESLGEELLEWARDEL-GLTV 235

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             D AA  ++ GTTG  K    +H+N +A + M +    L      V+L  LP+FHV G 
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLG--PGDVLLNGLPLFHVGGA 58

Query: 251 SVILYDQLQKGNCVV---SMGKFDIEMA---LRAIEKYRVTVWWVVPPIILALAKNSLVR 304
            V     L +G  VV     G  +  +     + +E+YRVT+   VP ++ AL +  L  
Sbjct: 59  IVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGD 118

Query: 305 KFDISSLKLVGSGAAPLGKELMEDCQK 331
             DISSL+   +GAAPL  E+    + 
Sbjct: 119 A-DISSLRYALTGAAPLPVEVARRFEA 144

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 71/276 (25%), Positives = 120/276 (43%), Gaps = 16/276 (5%)

Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+       ++    +   ++++    LG+   D V +    S      +L  +  GA+ 
Sbjct: 21  IETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80

Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSS 166
              N  YT++EL   + D+ P LV+  P  +  +  +   A   G+   V +       S
Sbjct: 81  LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKI---AAAAGAP-HVETLDADGTGS 136

Query: 167 KIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
                  L+E  + +  D   V     D AA+LY+SGTTG SKG +L+H N ++ +L + 
Sbjct: 137 -------LLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTL- 188

Query: 226 AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
                    D V++  LP+FH  GL V     L  G  ++ + KFD +  L  +   R T
Sbjct: 189 -VDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RAT 245

Query: 286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
           V   VP     L +   + +   + ++L  SG+APL
Sbjct: 246 VMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPL 281

Length = 504

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.3 bits (186), Expect = 5e-15
 Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 251
            D AA+LY+SGTTG  KGV+LTH   + A+ + +    L    D V+L  LP+FH+   +
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGL--RPDDVLLTPLPLFHINAQA 138

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
             +Y  L  G  +V + +F        + K+  TV+ ++  +   L K
Sbjct: 139 YSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMK 186

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 75.3 bits (186), Expect = 7e-15
 Identities = 77/304 (25%), Positives = 129/304 (42%), Gaps = 32/304 (10%)

Query: 38  ASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP 93
           A   +K+A+I      D   ++++ +    V + ++  + LG+ K D V I+ P     P
Sbjct: 58  AGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELP 117

Query: 94  ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL---L 150
           I  L    IGAI S     ++   L+ ++ D+  KL+IT    +   K + L  ++   L
Sbjct: 118 IAMLACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEAL 177

Query: 151 GSKDKVSSSGLISRSSKIVSF--------HDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
                V    ++ R+   V          HDL+    +        +   D   +LY+SG
Sbjct: 178 EKCPSVEKVIVVKRTGGEVPMVEGRDVWWHDLMA--KASPYCEPEPMDAEDPLFILYTSG 235

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDH----VVLCVLPMFHVFGLSVILYDQL 258
           +TG  KGV+ T         ++ A        D     V  C   +  + G S I+Y  L
Sbjct: 236 STGKPKGVVHTT-----GGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIVYGPL 290

Query: 259 QKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLK 312
             G   V+  G  D     R    +EKY+VT+++  P  I  L +  +   +K D+SSL+
Sbjct: 291 ANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLR 350

Query: 313 LVGS 316
           L+GS
Sbjct: 351 LLGS 354

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 72/298 (24%), Positives = 133/298 (44%), Gaps = 26/298 (8%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           +   D SL++S+    V ++++  + +G+ K D V+I+ P  +  PI  L    IGA+ S
Sbjct: 114 EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHS 173

Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP-----AVLLGSKDKVS----- 157
                ++   L++++ D  PK+VIT   +    K +NL      A+   +K+ VS     
Sbjct: 174 VVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICL 233

Query: 158 ----SSGLISRSSKIVSFHDLIELSGSVTDIP---DVS-VKQTDAAALLYSSGTTGVSKG 209
                  +    +K     D +     V + P   +V  V   D   LLY+SG+TG  KG
Sbjct: 234 TYENQLAMKREDTKWQEGRD-VWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG 292

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-G 268
           V+ T   ++  +     +       D V  C      + G S + Y  +  G  V+   G
Sbjct: 293 VLHTTGGYMVYTATTFKYAFDYKPTD-VYWCTADCGWITGHSYVTYGPMLNGATVLVFEG 351

Query: 269 KFDIEMALRA---IEKYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPL 321
             +   + R    ++KY+VT+++  P ++ +L ++    V +    SL+++GS   P+
Sbjct: 352 APNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPI 409

Length = 666

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 72/310 (23%), Positives = 121/310 (39%), Gaps = 53/310 (17%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI---GAIASTA 109
           + LSF++  +    ++H     GI +    ++    S+ F   F    A+   GA+    
Sbjct: 40  DELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEF---FALTFALFKAGAVPVLV 96

Query: 110 NPVYTVSELSKQVKDSNPKLVITVPE--------LWDKVKDLNLPAVLLGSKDKVSSSGL 161
           +P   +  L + + ++ P   I +P+         W K             +  V+  G 
Sbjct: 97  DPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGK----------PSVRRLVTVGG- 145

Query: 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS 221
             R     +    +   G+    P   +   D AA+L++SG+TG  KGV+ TH  F A  
Sbjct: 146 --RLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEA-- 201

Query: 222 LMISAHQEL----VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SM-----GKF 270
             I A +E      GE+D   L   P+F +FG ++        G   V   M        
Sbjct: 202 -QIEALREDYGIEPGEID---LPTFPLFALFGPAL--------GMTSVIPDMDPTRPATV 249

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
           D      AIE+Y VT  +  P ++  L +        + SL+ V S  AP+   ++E  +
Sbjct: 250 DPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFR 309

Query: 331 KNIP-GATIF 339
             +P  A I 
Sbjct: 310 AMLPPDAEIL 319

Length = 552

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 37/304 (12%)

Query: 40  YSSKLALIDADSDE-----SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI 94
              ++ALI  DS       + ++++    V +++   R LG+ K D V+I+ P      I
Sbjct: 55  RGDQIALI-YDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVI 113

Query: 95  CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWDKVKD 142
             L    IGAI S     +   EL+ ++ D+ PKL++T          VP   L DK  +
Sbjct: 114 AMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALE 173

Query: 143 LNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY 199
           L+      VL+ ++ +V +     R    + + +L+  +  V     V V+ TD   +LY
Sbjct: 174 LSQHKPHKVLILNRGQVPAPLKPGRD---LDWAELMAKARPV---DCVPVESTDPLYILY 227

Query: 200 SSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259
           +SGTTG  KGV+     + A +L  S       +   V      +  V G S I+Y  L 
Sbjct: 228 TSGTTGKPKGVVRDTGGY-AVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLL 286

Query: 260 KGN-CVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKN----SLVRKFDISS 310
            G   V+  GK     D     R IE+Y V   +  P  I A+ K       ++K+D+SS
Sbjct: 287 HGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSS 346

Query: 311 LKLV 314
           L+ +
Sbjct: 347 LRAL 350

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 81/351 (23%), Positives = 128/351 (36%), Gaps = 81/351 (23%)

Query: 18  PLVLPSDPSFSMVHFLFRNSASYSSK-LALIDAD-SDESLSFSQFKSIVIKVSHSFRHLG 75
           PL LP     ++   L R +     + +  IDAD S+E  S+++      ++    R LG
Sbjct: 1   PLPLPPGAPRTLEEALQRAAEHAPGRGITYIDADGSEEFQSYAELLEEAERILAGLRALG 60

Query: 76  ITKKD-VVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL----- 129
           +   D V+L    N   F   F   +  G +        T  E +  V     KL     
Sbjct: 61  LKPGDSVILQLERNE-DFVTAFWACVLGGFVPVPVAVPPTYDEPNAAVA----KLRNIWE 115

Query: 130 ------VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
                 ++T   L   +  L   A                   + +    + EL  +  D
Sbjct: 116 LLGSPVILTDAALVAALAGLRTRA-----------------GLEALRVLAIEELRSAPPD 158

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--------LD 235
            P    +  D A LL +SG+TGV K V+LTH+N +A S           +        LD
Sbjct: 159 APLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLD 218

Query: 236 HVVLCVLPMFHVFGLSV-----------ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV 284
           HV    + M H+  + +           IL D L+                L  I++YRV
Sbjct: 219 HVG--GIVMLHLRDVYLGCQQIHVPTDYILADPLR---------------WLDLIDRYRV 261

Query: 285 TVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGA----APLGKELME 327
           T+ W  P    AL  ++L     R +D+SSL+ + +      A   +  +E
Sbjct: 262 TITW-APNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLE 311

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 71.9 bits (176), Expect = 9e-14
 Identities = 68/333 (20%), Positives = 128/333 (38%), Gaps = 32/333 (9%)

Query: 12  YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSF 71
            R +   L  P     ++       +A+    +AL+     + L++++  +   +++   
Sbjct: 212 EREVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGG--QQLTYAELDARANRLARLL 269

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
             LG+   + V I A  S+   +  L V+  GA     +P+Y    L+  ++DS P L++
Sbjct: 270 ISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLL 329

Query: 132 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ 191
           T   L   V D+ LP + L                      D        TD    ++  
Sbjct: 330 TQAHLR--VDDVGLPGLAL----------------------DDALSEIPDTDPIPQALLG 365

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF--HVFG 249
              A ++Y+SG+TG  KGV + H+  +A  L  +  +  +   D V+      F   VF 
Sbjct: 366 DALAYIIYTSGSTGQPKGVRIEHRA-LANLLNDAGARFGLDADDRVLALASLSFDASVFE 424

Query: 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII--LALAKNSLVRKFD 307
           +   L +   +     ++ + D    L  +E   +TV  +VP ++  L LA  +      
Sbjct: 425 IFGALLEG-ARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISP 483

Query: 308 ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
              L+ + SG   L   L++   +    A    
Sbjct: 484 CERLRQLLSGGEALPLALVQRLLQLAALARRLL 516

Length = 642

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 71.3 bits (174), Expect = 1e-13
 Identities = 62/296 (20%), Positives = 102/296 (34%), Gaps = 17/296 (5%)

Query: 27  FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86
                   R                    ++++      ++    R LG+   D V    
Sbjct: 2   ERAAALFGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLG 56

Query: 87  PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
            N       +  V  +GA+  TANP  +  E++  +  +  K+++  P L      L L 
Sbjct: 57  FNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL------LPLV 110

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
             + G    V          K    +   E      +   V V +  A  + Y++GTTG+
Sbjct: 111 EAIRGELKTVQHFV--VMDEKAPEGYLAYE-EALGEEADPVRVPERAACGMAYTTGTTGL 167

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266
            KGV+ +H+  +  SL  S           VVL V+PMFHV    +     L     V+ 
Sbjct: 168 PKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 227

Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPII--LALAKNSLVRKFDISSLKLVGSGAAP 320
             + D    +   +   VT    VP +   LA    S   +      +LV  G+A 
Sbjct: 228 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKT-LRRLVVGGSAA 282

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 58/274 (21%), Positives = 92/274 (33%), Gaps = 62/274 (22%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           +F++ K    + ++  + LG+ + D V +  P         LG I +GA+     P  T 
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFI---PGTT- 57

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
                                             LG KD             I    +  
Sbjct: 58  ---------------------------------QLGPKD-------------IRYRLERA 71

Query: 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 235
                VT          D A L ++SGTTG+ K V+ TH   +   +  +   +L    D
Sbjct: 72  GARAIVTS-------ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDL--RPD 122

Query: 236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPI 293
            +   +       G    L+     G  V      +FD E  L  +E+Y VT +   P  
Sbjct: 123 DLHWTIADPGWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTA 182

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
              L +  L   +D S L+ V S   PL  E+++
Sbjct: 183 YRMLLQQDL-SSYDFSHLRHVVSAGEPLNPEVID 215

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 61/283 (21%), Positives = 109/283 (38%), Gaps = 73/283 (25%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           + ++S+    V +++     LG+ K D V I+ P      +  L +  IGAIA      +
Sbjct: 7   TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGF 66

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
               ++ +++D+  K++IT                         + G + R         
Sbjct: 67  GPDAVATRLQDAEAKVLIT-------------------------ADGFLRR--------- 92

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                G   D+ D      D A ++Y+SGTTG  KG + TH  F   +         +  
Sbjct: 93  -----GKRVDLKD------DPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKP 141

Query: 234 LDHVVLCVLPM-----------FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR---AI 279
            D  +L +  M             + G +++LY+           G  D     R    +
Sbjct: 142 GD-RLLWITDMGWMMGPWLVLGGLLLGATIVLYE-----------GAPDYPDPDRLWRIV 189

Query: 280 EKYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAP 320
           E+++VT   + P +I AL  +  + V   D+SSL+++GS   P
Sbjct: 190 ERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEP 232

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 34/202 (16%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           +S+ + +   + +    R LG+   D + IFA N   + I      +             
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQS----------- 54

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
                          ++ VP L+D    L   A+     ++   S +   + K+ SF +L
Sbjct: 55  ---------------LVIVP-LYDT---LGEEAIEY-ILNETEISIVFCDAVKVYSFEEL 94

Query: 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGE 233
            EL G    +P    K  D A ++Y+SGTTG  KGV+LTH N +A    +     E +G 
Sbjct: 95  EEL-GKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGP 153

Query: 234 LDHVVLCVLPMFHVFGLSVILY 255
            D V +  LP+ H+F   V   
Sbjct: 154 TD-VYISYLPLAHIFERVVENV 174

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 16/242 (6%)

Query: 52  DESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
            E++++++      +V+ +   H G+   D V +   N   F   +LG+  +G   +  N
Sbjct: 1   GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60

Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK--- 167
                  L    +    ++++  PEL + V+++ LPA+    +        +S +S    
Sbjct: 61  TNIRSGSLLHCFRCCGARVLVADPELLEAVEEI-LPAL----RAMGVRVFYLSHTSPPEG 115

Query: 168 IVSFHDLI--ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
           ++S    +       V       V     A  +Y+SGTTG+ K   ++H   +  S M  
Sbjct: 116 VISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGM-- 173

Query: 226 AHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV 284
               L G   D VV   LP++H  G  + +   +  G  +V   KF          KY V
Sbjct: 174 --LSLCGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNV 231

Query: 285 TV 286
           TV
Sbjct: 232 TV 233

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 23/162 (14%)

Query: 197 LLYSSGTTGVSKGVILTHKNFIAASL------------MISAHQELVGELDHVVLCVLPM 244
           +LY+ GTTG+ KGV+   ++     L               A Q   G      L   P+
Sbjct: 8   MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67

Query: 245 FHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVV-----PPIILAL 297
            H  G  + L   L  G  VV +   KFD +   R +EK+RV    +V      P++ AL
Sbjct: 68  MHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126

Query: 298 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
                  ++D+SSL+ + S  A    E+ +   + +P   + 
Sbjct: 127 EAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALV 165

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 68.8 bits (168), Expect = 7e-13
 Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 15/292 (5%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S+ +    V +++     LG+ + DVV    PN   F   +L    IGA+ +   P++ 
Sbjct: 54  FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR 113

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS--SGLISRSSKIVSFH 172
             ELS  +  ++ K+ + VP ++      +  A+    + K+ +    ++       SF 
Sbjct: 114 ERELSFMLNHADSKVFV-VPSVFRG---FDHAAMARELQSKLPALRQVVVIDGDGDDSFD 169

Query: 173 DLIELSGSVTDIPDVSVKQ------TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 226
            ++            ++         D   L+Y+SGTTG  KGV+ T  N + +++   A
Sbjct: 170 RVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHT-ANTLFSNIHPYA 228

Query: 227 HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
            +  +G  D V+L   PM H  G    L   L      V    ++   A   I +  VT 
Sbjct: 229 ERLELGGGD-VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTF 287

Query: 287 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
                P +  L +        + SL       AP+   L+E   + + GA I
Sbjct: 288 TMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GALI 338

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 68.7 bits (169), Expect = 8e-13
 Identities = 73/336 (21%), Positives = 125/336 (37%), Gaps = 79/336 (23%)

Query: 33  LFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           L R+      + A+I    D     LS+++ +  V  ++ + R LG+   D V  + PN 
Sbjct: 92  LLRHRRD--DRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNI 149

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKV 140
               +  L   ++GAI S+ +P + V  +  +     PK++I V              KV
Sbjct: 150 PETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKV 209

Query: 141 KDLN--LP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 194
            +L   LP     V++     +  +   +     + + D +               + + 
Sbjct: 210 AELRAALPSLEHVVVV---PYLGPAAAAAALPGALLWEDFLA---------PAEAAELEF 257

Query: 195 AAL--------LYSSGTTGVSK-------GVILTHKNFIAASLMISAHQEL---VGELDH 236
             +        LYSSGTTG+ K       G++L H         +     L   +G  D 
Sbjct: 258 EPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEH---------LKELG-LHCDLGPGDR 307

Query: 237 V---VLCVLPM--FHVFGL----SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 287
                 C   M  + V GL    +++LYD    G    S    D  +      +  VTV+
Sbjct: 308 FFWYTTCGWMMWNWLVSGLLVGATLVLYD----G----SPFYPDPNVLWDLAAEEGVTVF 359

Query: 288 WVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPL 321
                 + A  K  LV     D+S+L+ +GS  +PL
Sbjct: 360 GTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPL 395

Length = 655

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 59/312 (18%), Positives = 121/312 (38%), Gaps = 56/312 (17%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
             A+ID     +L++ +       ++ + R  G+   D+V +  P      +  LG++  
Sbjct: 3   ATAVID--GAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA     +P       +  +  +  + V+T P L                          
Sbjct: 61  GAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPE---------------------- 98

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
              +  +        +      P   V   D A ++++SG+TG  KGV++TH+   A + 
Sbjct: 99  --EAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRA--AVNT 154

Query: 223 MISAHQEL-VGELDHVVLCV------LPMFHVFGL-----SVILYDQLQKGNCVVSMGKF 270
           ++  ++   VG  D  VL +      L ++ +FG      +++L D+ ++          
Sbjct: 155 ILDVNRRFGVGPAD-RVLALSALHFDLSVYDIFGALSAGAALVLPDEARRR--------- 204

Query: 271 DIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
           D +     ++++ VTVW  VP +   +L  A+++      + SL+LV      +  +L  
Sbjct: 205 DPDHWAELVQRHGVTVWNSVPALMDMLLTYAEDAARL---LPSLRLVMLSGDWIPLDLPR 261

Query: 328 DCQKNIPGATIF 339
             +   PGA + 
Sbjct: 262 RLRALAPGARLV 273

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 62/235 (26%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D  LS+++F +   + +H+ R LG+ K DVV +   N   + + +L +  +GA+A+  N 
Sbjct: 1   DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                 L+  +  S+ + VI  P                                     
Sbjct: 61  TQRGEVLAHCINVSDARAVIVDPAF----------------------------------- 85

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
              I  SG                       TTG+ K  I++H+ ++ A  +       +
Sbjct: 86  --YIYTSG-----------------------TTGLPKAAIMSHRRWLRAGAVFGGL--GL 118

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
            + D V+   LP++H   L+V     L  G  +    KF        + +Y  T 
Sbjct: 119 LKPDDVLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATA 173

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 76/312 (24%), Positives = 124/312 (39%), Gaps = 30/312 (9%)

Query: 35  RNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+      +LAL+   S+     +L++ Q    V   + + R LG+ + D VLI+ P   
Sbjct: 60  RHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIA 119

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWD 138
                 L    IGAI S     +    L+ ++ D+ PKL+++          +P   L D
Sbjct: 120 EAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLD 179

Query: 139 KVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
                     P VLL  +     + +     + V +  L         +P   ++  + +
Sbjct: 180 AAIAEAQHPPPHVLLVDR---GLAPMRLIPGRDVDYAAL-RTQHEDAQVPVEWLESNEPS 235

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            +LY+SGTTG  KGV      + A +L +S           V+     +  V G S I+Y
Sbjct: 236 YILYTSGTTGKPKGVQRDVGGY-AVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVY 294

Query: 256 DQLQKG-NCVVSMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKN--SLVRKFDIS 309
             L  G   V+  G     D  +    +E+Y V   +  P  I  L K   + +RK D+S
Sbjct: 295 APLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLS 354

Query: 310 SLKLVGSGAAPL 321
           SL  +     PL
Sbjct: 355 SLHWLFLAGEPL 366

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 64/300 (21%), Positives = 115/300 (38%), Gaps = 74/300 (24%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT--VSELSKQVKDSNPKL 129
           + LG+   D + I + N   + I  L +   G ++    P+Y    +E  + V + +   
Sbjct: 24  QSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSV---PLYPTLTAETIRYVLEHSDAK 80

Query: 130 VITVPEL--WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS-------FHDLIE---- 176
            + V +L  WD +K   +P             GL +      S       + DL+     
Sbjct: 81  ALFVGKLDDWDAMKAG-VPE------------GLPTIILFPYSTLKDHYKWDDLLAATEP 127

Query: 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH 236
           L G     P+      D A ++Y+SGTTG  KGV+L+   F  A+        L      
Sbjct: 128 LQGRPLPEPE------DLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPN--D 179

Query: 237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVP- 291
            +L  LP+ H+    ++      +G  + S  +      ++     +++ R TV++ VP 
Sbjct: 180 RLLSYLPLAHIAERVIV------EGGSLYSGAEVFFVESLDTFAADLQRARPTVFFSVPR 233

Query: 292 ------------------------PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
                                   PI+ +L K  +++   +   +L GSGAAP+   L+ 
Sbjct: 234 LWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIA 293

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 16/199 (8%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           +++Q     +KVS +    GI   D V   A N+      + G++ IGAI  T NP    
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100

Query: 116 SELSKQVKDSNPKLVIT----VPELWDKVKDLNLPAV----LLGSKDKVSSSGLISRSSK 167
            +++  +  +  ++VIT    VP L +K+ D  LP+V    +L     +  + L      
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPIL-EKIAD-KLPSVERYVVLTDAAHMPQTTL----KN 154

Query: 168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH 227
            V++ + I    +  D    +  +  AA + Y+SGTTG  KGV+ +H++ +  +LM +  
Sbjct: 155 AVAYEEWIA--EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNG 212

Query: 228 QELVGELDHVVLCVLPMFH 246
             L       +L V+P+FH
Sbjct: 213 DALGTSAADTMLPVVPLFH 231

Length = 542

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 79/297 (26%), Positives = 124/297 (41%), Gaps = 22/297 (7%)

Query: 43  KLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
           KLALI   D   ++  +F   K    K ++ F+ LGI K D V++       F    L +
Sbjct: 33  KLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLAL 92

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE--LWDKVKDLNLPAVLLGSKDKVS 157
             IGAIA  A  + T  ++  +++ +  K+++ + E  + + + +    A   GS   + 
Sbjct: 93  HKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDE---AAPECGSPTLLV 149

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
             G       I  F   IE +    + P  + +    D   + ++SGTTG+ K V   H 
Sbjct: 150 LVGDPVPEGWI-DFDKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPKMV--EHD 206

Query: 216 NFIAASLMISA---HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKF 270
           +      +++A        G L   V        V+G    LY Q   G  V      KF
Sbjct: 207 HTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGK---LYGQWIAGAAVFVYDYDKF 263

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
           D +  L  IEKY VT +   P I   L K  L  K+D+SSL+   +   PL  E+  
Sbjct: 264 DPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDL-SKYDLSSLRYCTTAGEPLNPEVFN 319

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 63.2 bits (155), Expect = 6e-11
 Identities = 80/321 (24%), Positives = 140/321 (43%), Gaps = 60/321 (18%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+  +   K+A+I    D      +++ +    V + +++ + LG+ K D V I+ P   
Sbjct: 75  RHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIP 134

Query: 91  HFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
              +  L    IGA+ S    V    ++   L+ ++ D+  KLVIT  E     K + L 
Sbjct: 135 EAAVAMLACARIGAVHS----VVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLK 190

Query: 147 AVL---LGSKDKVSSSGLISRSSKIVS--------FHDLIELSGSVTDIPDVSVKQTDAA 195
           A +   L +   V    ++ R+   V         +H+L+   G+  +     +   D  
Sbjct: 191 ANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVA--GASDECEPEPMDAEDPL 248

Query: 196 ALLYSSGTTGVSKGVI------LTHKNFIAASLMISAHQELVGEL--DHVVLCVLPMFHV 247
            +LY+SG+TG  KGV+      L +    AA  M     + V +     V  C   +  V
Sbjct: 249 FILYTSGSTGKPKGVLHTTGGYLVY----AAMTM-----KYVFDYKDGDVYWCTADVGWV 299

Query: 248 FGLSVILYDQLQKGNCVV---------SMGKF-DIEMALRAIEKYRVTVWWVVPPIILAL 297
            G S I+Y  L  G   +           G+F ++      I+K++VT+++  P  I AL
Sbjct: 300 TGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV------IDKHKVTIFYTAPTAIRAL 353

Query: 298 AK--NSLVRKFDISSLKLVGS 316
            K  +   +K+D+SSL+L+GS
Sbjct: 354 MKEGDEHPKKYDLSSLRLLGS 374

Length = 637

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 63/291 (21%), Positives = 102/291 (35%), Gaps = 71/291 (24%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K A    +  +SL++ +   +  + ++  R LG++  D VL+  P+S      FL     
Sbjct: 1   KTAFYCGE--QSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFL----- 53

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
             + + A  V             NP L  T  +L   + D     +              
Sbjct: 54  ACLKAGAVAVAL-----------NPLL--TPQDLEHILDDSGAALL-------------- 86

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
                             VT+  D      D A  LY+SGTTG  KGV+  H++      
Sbjct: 87  ------------------VTE-AD------DIAYWLYTSGTTGKPKGVMHRHRD------ 115

Query: 223 MISAHQELVGEL-----DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMAL 276
            ++  +    EL        +     +F  +GL   L   L  G   V + G    E  L
Sbjct: 116 PLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVL 175

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
             + ++R TV + VP +  AL ++         S++L  S    L   L E
Sbjct: 176 DLLARHRPTVLFGVPALYRALLESGAGSAPLFRSVRLCVSAGEALPAGLAE 226

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 9/212 (4%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
                E  +F+   +    ++H+    LGIT    V     N          V  +GA+ 
Sbjct: 32  GGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVF 91

Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSG 160
           +  N      ++   +  +  ++++  P L +++ ++    P V     +G  D  S++ 
Sbjct: 92  NPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAA 151

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            +    K+ S+  L++   +V D P++   +T AAA+ YS+GTTG  KGV+ +H++    
Sbjct: 152 HMPEGIKVYSYEALLDGRSTVYDWPEL--DETTAAAICYSTGTTGAPKGVVYSHRSLYLQ 209

Query: 221 SLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           SL +     L        LC +P++HV    V
Sbjct: 210 SLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV 241

Length = 576

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 83/316 (26%), Positives = 129/316 (40%), Gaps = 53/316 (16%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L++ Q    V + S    +L I+K D VLI+  N++   I  L    IGA        Y+
Sbjct: 93  LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152

Query: 115 VSELSKQVKDSNPKLVITVPE--LWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVS 170
           V  L  +++   PKL+IT     L D++     NL   +  S  K S+   + R+  I S
Sbjct: 153 VKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRND-ITS 211

Query: 171 FHDLIELSGSVTDIPD----------------------VSVKQTDAAALLYSSGTTGVSK 208
             DL ++  ++  IP+                      V V+ +    +LY+SGTTG SK
Sbjct: 212 ESDLKKI-ETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSK 270

Query: 209 GVILTHKNFIAA-----SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
            V+ ++   +         +I      V      +  V   FH F     LY  L  GN 
Sbjct: 271 AVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVS--FHGF-----LYGSLSLGNT 323

Query: 264 VVSMGKFDI------EMAL-RAIEKYRVTVWWVVPPIILALAKNS-----LVRKFDISSL 311
            V M +  I      E  L   IEK++VT    +P  I  L K       +  K+D+S+L
Sbjct: 324 FV-MFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNL 382

Query: 312 KLVGSGAAPLGKELME 327
           K +  G   + + + E
Sbjct: 383 KEIWCGGEVIEESIPE 398

Length = 647

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 24/229 (10%)

Query: 50  DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA--- 106
           D   +L++ Q+     + + +F  LG+ +   V I   NS  + I  +G I  G IA   
Sbjct: 4   DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGI 63

Query: 107 -STANP-----VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSG 160
            +T +P     V   SE +  V D N K +  +  + D++  L    +      K     
Sbjct: 64  YTTNSPEACQYVAETSEANILVVD-NAKQLQKILAIQDQLPHLKA-IIQYREPLKEKEPN 121

Query: 161 LISRSSKIVSFHDLIELSGSVTD-----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           L S       + + +EL  S+ D     I + S K      L+Y+SGTTG+ KGV+L+H 
Sbjct: 122 LYS-------WKEFMELGRSIPDEQLDAIIE-SQKPNQCCTLIYTSGTTGMPKGVMLSHD 173

Query: 216 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
           N    +     H +L       V+  LP+ H+    + ++  +  G CV
Sbjct: 174 NITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCV 222

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 59.5 bits (145), Expect = 8e-10
 Identities = 58/294 (19%), Positives = 104/294 (35%), Gaps = 74/294 (25%)

Query: 36  NSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95
            + ++   +A+   D   SL++++      K++H    LG+   D+V +    S    + 
Sbjct: 1   RAQTHPDAVAVDFWD--GSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVA 58

Query: 96  FLGVIAIGAIASTA-NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKD 154
            L V+  GA A    +P   V  L   ++DS   +V+T           + PA ++    
Sbjct: 59  ILAVLKAGA-AYVPIDPSAPVERLQFIIEDSGATVVLTS--------SPDDPAYVI---- 105

Query: 155 KVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                                                       Y+SG+TG  KGV++TH
Sbjct: 106 --------------------------------------------YTSGSTGKPKGVVITH 121

Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV--ILYDQLQKGNCVVSMGKFDI 272
           +N    + + +    L       VL        F +S+  I    L  G  +V   +   
Sbjct: 122 RNI--CNFLRAEGAILGIRPGDRVLQFAS--IAFDVSILEIFT-TLLAGGTLVIPPEELR 176

Query: 273 EMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
              L   + + RVTV  + P    +L   +L+   D+ SL+ +  G     + L
Sbjct: 177 LEDLAEFLNRLRVTVAHLTP----SLL--ALLDPEDVPSLRTLILGGEACPQAL 224

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 59.0 bits (144), Expect = 1e-09
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A ++Y+SG+TG  KGV++ H+     +L+    +         VL        F  SV
Sbjct: 94  DLAYVIYTSGSTGRPKGVMVEHRGL--VNLLAWLQERYGLTAGDRVLQFAS--FSFDASV 149

Query: 253 I-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
             ++  L  G  +V        D E     + ++R+TV  +VP ++ AL     +    +
Sbjct: 150 WEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLD--ALEPAAL 207

Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
            SL+LV  G   L  EL+   ++  PGA + 
Sbjct: 208 PSLRLVIVGGEALPAELVRRWRELFPGARLV 238

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 73/300 (24%), Positives = 121/300 (40%), Gaps = 75/300 (25%)

Query: 46  LIDADSDES-LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI----CFLG-V 99
            I+ D  E  +S+ Q  +  +KV  + + LGI   D V+    ++  F      C LG +
Sbjct: 6   FIEGDKKEKFISYEQLFTRALKVLGALQKLGIKPGDEVVFQIEDNEDFIYVFWACILGGI 65

Query: 100 IAIGAIASTANPV-YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS 158
           I +        P+ Y  ++  K       KL+     +W+    LN P  L+  +D + S
Sbjct: 66  IPV--------PLSYGNTDEHKL------KLL----RVWNI---LNNP-FLITDRDSLLS 103

Query: 159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI 218
                                    +PD      D A + +SSG+TG  KGVILTHKN +
Sbjct: 104 -------------------------LPD------DIAFIQFSSGSTGEPKGVILTHKNLL 132

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG--NCVVSMGKFDIE--- 273
                I    E+    + V L  +P+ H  GL          G    ++    F I    
Sbjct: 133 TNIEAIIEAAEI--TSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLF-IRRPL 189

Query: 274 MALRAIEKYRVTVWWVVPP-----IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
           + L    ++R T+  +  P      +L   K   +  +D+SS++L+ +GA P+  +L E+
Sbjct: 190 LWLDKASQHRATI--LSSPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEE 247

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 25/174 (14%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +AL+    D SL++++      +++   R  G+   DVV +    S    +  L ++  
Sbjct: 3   AIALVY--GDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA     +P Y    L+  ++DS  ++++T         D +L  +    +  +      
Sbjct: 61  GAAYVPLDPAYPAERLAFMLEDSGARVLLT---------DESLAPLARADQLPLVILEEE 111

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN 216
                                 P  +V   D A ++Y+SG+TG  KGV + H+ 
Sbjct: 112 LD--------------AEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRG 151

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 34/219 (15%)

Query: 47  IDADSD-----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101
           ID + D     E+L++SQ     + V+   R  G T  D  +I AP  + + + FLG + 
Sbjct: 23  IDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTG-DRAVILAPQGLEYIVAFLGALQ 81

Query: 102 IGAIA---STANPVYTVSE--LSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV 156
            G IA   S   P     +  +S  ++D++P +V+T   + D V +             V
Sbjct: 82  AGLIAVPLSV--PQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEY------------V 127

Query: 157 SSSGLISRSSKIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           +       +  ++   DL++L S   +D     +     A L Y+SG+T    GV+++H+
Sbjct: 128 APQPG-QSAPPVIEV-DLLDLDSPRGSDARPRDL--PSTAYLQYTSGSTRTPAGVMVSHR 183

Query: 216 NFIA--ASLMIS--AHQELVGELDHVVLCVLPMFHVFGL 250
           N IA    LM         V   D  V+  LP +H  GL
Sbjct: 184 NVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGL 222

Length = 578

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 63/286 (22%), Positives = 118/286 (41%), Gaps = 41/286 (14%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           +LA +D       ++++  ++V +++   R  G    + + + A NS+           +
Sbjct: 11  RLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARV 70

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GAI    N   + SEL   ++D+ P+L                   LLG  D V++    
Sbjct: 71  GAIYVPLNWRLSASELDALLQDAEPRL-------------------LLGD-DAVAAGRTD 110

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
                +      I  + ++      S+     + +L++SGT+G  KGV+L+ +N    + 
Sbjct: 111 -----VEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAH 165

Query: 223 MISAHQELVGELDH--VVLCVLPMFHVFGLSVILYDQL-QKGNCVVSMGKFDIEMALR-- 277
                  ++G +D     LC  PMFH+ GL   +   L   G+ +VS G F+ +  L   
Sbjct: 166 NFG----VLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG-FEPKRTLGRL 220

Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK---LVGSGAAP 320
                 +T ++ VP +  A         FD ++L+    + +G AP
Sbjct: 221 GDPALGITHYFCVPQMAQAFRAQP---GFDAAALRHLTALFTGGAP 263

Length = 488

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 57/268 (21%)

Query: 52  DESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
           +E+ ++        +++H     LG+   + VL+ + N+     C+L V+  GAI  T  
Sbjct: 58  EETWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTM 117

Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS 170
           P+    EL+  V                              K +++             
Sbjct: 118 PLLRAKELTTIV-----------------------------DKARIT------------- 135

Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL 230
            H L +   +  D         D A + ++SGTTG+ KG +  H++ +A       H   
Sbjct: 136 -HALCDKRLTAAD---------DVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQ 185

Query: 231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV 290
               D V +   P+   FGL  ++   L+ G   V + +    + L+AI+++R T+ +  
Sbjct: 186 PTP-DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTA 244

Query: 291 PPIILALAKNSLVRKFDISSL-KLVGSG 317
           P    A+     V+ FDISSL K V +G
Sbjct: 245 PTAYRAMLI--KVKAFDISSLRKCVSAG 270

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 61/278 (21%), Positives = 110/278 (39%), Gaps = 28/278 (10%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           VH L    A  +  + AL     ++ LS+++      +++H     G+    +V I    
Sbjct: 514 VHQLIEAQARQHPERPAL--VFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVER 571

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           SI   +  L V+  G      +P Y    L+  + DS  +L++T   L   +  L +PA 
Sbjct: 572 SIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHL---LAQLPVPAG 628

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
           L                  +        L G     P+V++   + A ++Y+SG+TG  K
Sbjct: 629 L----------------RSLCLDEPADLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPK 672

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
           GV ++H   +A  + + A +  +   D +++     F +      L+  L  G  +  + 
Sbjct: 673 GVAISHGA-LANYVCVIAERLQLAADDSMLMVSTFAFDLGVT--ELFGALASGATLHLLP 729

Query: 269 K---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
                D E     +    VTV  +VP  + AL + S V
Sbjct: 730 PDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV 767

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.7 bits (139), Expect = 5e-09
 Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 26/200 (13%)

Query: 16   RPPLVLPSDPSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL 74
            R P   P  P    VH      +A     +A++    D+ LS+++  S   +++H  R  
Sbjct: 1994 RTPEAYPRGP---GVHQRIAEQAARAPEAIAVVF--GDQHLSYAELDSRANRLAHRLRAR 2048

Query: 75   GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
            G+  +  V I A  S    +  L V+  G      +P Y    L+  ++DS   L++T  
Sbjct: 2049 GVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQR 2108

Query: 135  ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 194
             L +    L LPA            G+       +      E +      P V +   + 
Sbjct: 2109 HLLE---RLPLPA------------GVAR-----LPLDRDAEWADYPDTAPAVQLAGENL 2148

Query: 195  AALLYSSGTTGVSKGVILTH 214
            A ++Y+SG+TG+ KGV ++H
Sbjct: 2149 AYVIYTSGSTGLPKGVAVSH 2168

Length = 5163

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 74/284 (26%), Positives = 124/284 (43%), Gaps = 25/284 (8%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           A+I A++ E +S+ Q       ++      G+   DVV + + NS    +     +  G 
Sbjct: 15  AVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGL 74

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISR 164
             +  N   T  E    V DS  ++++    L      +     L     ++S  G I  
Sbjct: 75  YITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPL-----RLSFGGEID- 128

Query: 165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LTHKNFIAAS- 221
                SF   +  +G     P ++ +Q   A +LYSSGTTG  KG+   L  ++  A   
Sbjct: 129 --GFGSFEAALAGAG-----PRLT-EQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGD 180

Query: 222 --LMISAHQELVGELDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGKFDIEMALRA 278
             + I+     + E D +     P++H   L    +   L  G  VV   +FD +  L  
Sbjct: 181 PIVAIARAFYDISESD-IYYSSAPIYHAAPLRWCSMVHAL--GGTVVLAKRFDAQATLGH 237

Query: 279 IEKYRVTVWWVVPPIILALAK-NSLVR-KFDISSLKLVGSGAAP 320
           +E+YR+TV  +VP + + L K ++ VR ++D+SSL+ V   AAP
Sbjct: 238 VERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAP 281

Length = 501

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 9/132 (6%)

Query: 193 DAAAL-LYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVLCVLPMFHVFGL 250
           DA AL +Y+SGTTG  KGV+L+ +  IAA L  ++   +     D V++  LP+FHV GL
Sbjct: 128 DAPALIVYTSGTTGPPKGVVLS-RRAIAADLDALAEAWQWTA--DDVLVHGLPLFHVHGL 184

Query: 251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-SLVRKFDIS 309
            + +   L+ GN  V  G+   E   +A+ +   T+++ VP +   +A +    R     
Sbjct: 185 VLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADPEAARAL--R 241

Query: 310 SLKLVGSGAAPL 321
             +L+ SG+A L
Sbjct: 242 GARLLVSGSAAL 253

Length = 471

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 43/237 (18%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D   +F +      KV++ F+  G    DVV +F  N + F   +LG+  IG   +  N 
Sbjct: 1   DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
              +  L   +  S  K +I            NL   LL      + S     S   V+F
Sbjct: 61  NLRLESLLHCITVSKAKALIF-----------NLLDPLL------TQSSTEPPSQDDVNF 103

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN--FIAASLMISAHQE 229
            D +                      +Y+SGTTG+ K  ++ H     IAA     A+  
Sbjct: 104 RDKL--------------------FYIYTSGTTGLPKAAVIVHSRYYRIAA----GAYYA 139

Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
                + VV   LP++H  G  + +   L  G+ VV   KF          KY  T+
Sbjct: 140 FGMRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTI 196

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 57/287 (19%), Positives = 103/287 (35%), Gaps = 59/287 (20%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           SL+F +      +++   R  GI K D V++  P           +  +GA+    +P  
Sbjct: 2   SLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGM 61

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
               L + ++++                    P   +G                      
Sbjct: 62  GRKHLGRCLEEAE-------------------PDAFIG---------------------- 80

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     IP       D AA+L++SG+TG  KGV+ TH+ F AA +        + E
Sbjct: 81  ----------IPKAD----DPAAILFTSGSTGPPKGVVYTHRTF-AAQIDALRSLYGIRE 125

Query: 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
            D   L   P F +FG ++ +   +   +   +    D     +AI +   +  +  P +
Sbjct: 126 GD-RDLAAFPPFALFGPALGVTTVIPAMD-PTAPAALDPAKLAQAIREIGASCVFGSPAL 183

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI-PGATIF 339
           +  +A+        + SL+ V S  AP+  +L+     N+ P A I 
Sbjct: 184 LKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIH 230

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 29/216 (13%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS----IHFPICF---LGVIAI--- 102
           E +++ Q    V   +     LG  K++ V IFA       I    CF   + V+ I   
Sbjct: 105 EWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYAS 164

Query: 103 ---GAIASTANP--VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
               A+  + N   V TV   SKQ+K    KL I +    + VK +    + +  +   S
Sbjct: 165 LGEEALCHSLNETEVTTVICDSKQLK----KL-IDISSQLETVKRV----IYMDDEGVDS 215

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
            S L   S+  VS    +E  G    +        D A ++Y+SG+TG+ KGV++TH N 
Sbjct: 216 DSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNI 275

Query: 218 IAASLMISAHQELVGELDH--VVLCVLPMFHVFGLS 251
           +A    ++    +V +L    V L  LP+ H+  L+
Sbjct: 276 VAT---VAGVMTVVPKLGKNDVYLAYLPLAHILELA 308

Length = 696

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 23/297 (7%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           AL+      ++S+     +V  ++      G+   D V +   ++  F +  L       
Sbjct: 34  ALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL 93

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISR 164
           +    +P   ++E   + + +  ++V+      D   D   P         V+  G    
Sbjct: 94  VVVPLDPALPIAEQRVRSQAAGARVVLIDA---DGPHDRAEPTTRWWPL-TVNVGGDSGP 149

Query: 165 SSKIVSFHDLIELSGSVTDIPDVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAAS 221
           S   +S H    L  +    P  S  +    D A ++++ GTTG+ K V  TH N IA+S
Sbjct: 150 SGGTLSVH----LDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHAN-IASS 204

Query: 222 L--MISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKFDIEMALR 277
           +  +I+ ++  +   D  V  V+P++H  GL   L   L  G  V+  + G+F       
Sbjct: 205 VRAIITGYR--LSPRDATV-AVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWD 261

Query: 278 AIEKYRVTVWWVVPP---IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK 331
            I+    T +  VP    I+L  A      +   ++L+ + S +APL  E  +  Q 
Sbjct: 262 DIKAVGATWYTAVPTIHQILLERAATEPSGR-KPAALRFIRSCSAPLTAETAQALQT 317

Length = 534

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 35/254 (13%)

Query: 49  ADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST 108
           AD+    S+ + +  V+ +++  R  G+   D V +  P S+   +    ++  GA    
Sbjct: 478 ADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLP 537

Query: 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
            +  Y    L   ++D+ P L+IT  +   +  D+     L  +           + S+ 
Sbjct: 538 LDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQ- 596

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
                           P         A ++++SG+TG  KGV++     +   L +  H 
Sbjct: 597 ----------------PH------HTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY 634

Query: 229 ELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFD-----IEMALRAIEKY 282
            L    D VVL   P    F +SV   +     G  +V M + +     + M  +   +Y
Sbjct: 635 PLTA--DDVVLQKTPC--SFDVSVWEFFWPFIAGAKLV-MAEPEAHRDPLAMQ-QFFAEY 688

Query: 283 RVTVWWVVPPIILA 296
            VT    VP ++ A
Sbjct: 689 GVTTTHFVPSMLAA 702

Length = 1296

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
            D A +L++SG+ G  KGV+L+H+N +A    ++A  +   E    V   LP+FH FGL
Sbjct: 793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPE--DKVFNALPVFHSFGL 849

Length = 1140

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
            AV++G     ++  L  +  ++++  DL+        I  V   + D A +  +SG+TG
Sbjct: 110 KAVVVGEPFLAAAPVLEEKGIRVLTVADLLA----ADPIDPVETGEDDLALMQLTSGSTG 165

Query: 206 VSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
             K V +TH N  A   ++ ++A  ++      V++  LP+FH  G+   L   +  G  
Sbjct: 166 SPKAVQITHGNLYANAEAMFVAAEFDVE---TDVMVSWLPLFHDMGMVGFLTVPMYFGAE 222

Query: 264 VVSMGKFD------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK-----FDISSLK 312
           +V +   D      +   L  I KYR T+    P    AL    L R+     FD+SSL+
Sbjct: 223 LVKVTPMDFLRDPLLWAEL--ISKYRGTM-TAAPNFAYALLARRLRRQAKPGAFDLSSLR 279

Query: 313 LVGSGAAPLGKELMED 328
              +GA P+    +ED
Sbjct: 280 FALNGAEPIDPADVED 295

Length = 545

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 82/333 (24%), Positives = 129/333 (38%), Gaps = 72/333 (21%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+ A    +LALI    + D + + +F Q    V +++   R LG+ + D VLI+ P   
Sbjct: 61  RHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIA 120

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWD 138
                 L    IGAI S     +    L+ ++ D+ P L+++          VP   L D
Sbjct: 121 EAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLD 180

Query: 139 KVKDL---NLPAVLLGSKDKVSSSGLIS---RSSKIVSFHDLIELSGSVTDIPDVSVKQT 192
           +   L       VLL  +      GL      + + V +  L         +P   ++  
Sbjct: 181 EAIALAQHKPRHVLLVDR------GLAPMARVAGRDVDYATLRAQHLG-ARVPVEWLESN 233

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF---- 248
           + + +LY+SGTTG  KGV                 Q   G   + V     M  +F    
Sbjct: 234 EPSYILYTSGTTGKPKGV-----------------QRDTG--GYAVALATSMDTIFGGKA 274

Query: 249 --------------GLSVILYDQLQKGNC-VVSMG---KFDIEMALRAIEKYRVTVWWVV 290
                         G S I+Y  L  G   ++  G   + D  +  R +EKY+V   +  
Sbjct: 275 GETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSA 334

Query: 291 PPIILALAKN--SLVRKFDISSLKLVGSGAAPL 321
           P  I  L K   +L+RK D+SSL+ +     PL
Sbjct: 335 PTAIRVLKKQDPALLRKHDLSSLRALFLAGEPL 367

Length = 629

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 45/211 (21%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY- 113
           +++++    ++        LG+TK   V I+      +     G+ +   +A+T   VY 
Sbjct: 122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAAT---VYA 178

Query: 114 TVSE--LSKQVKDSNPKLVI----TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
            + E  L+  ++++  K ++     VP L   +K   +P   +   D + +S + +   +
Sbjct: 179 NLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS-VDTEGCR 237

Query: 168 IVSFHDLIELSGSVTD--IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
           +V++ D++    S       ++     D A ++Y+SGTTG  KGV+ TH + + A ++  
Sbjct: 238 LVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGS-LTAGILAL 296

Query: 226 AHQ--ELVGEL--DHVVLCVLPMFHVFGLSV 252
             +  +L+G    D      LP+ H+    V
Sbjct: 297 EDRLNDLIGPPEEDETYCSYLPLAHIMEFGV 327

Length = 700

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 79/350 (22%), Positives = 134/350 (38%), Gaps = 41/350 (11%)

Query: 9   DG--IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALI----DADSDESLSFSQFKS 62
           DG  + +S  P          S+ H L + +A    +  L            +++ + K 
Sbjct: 33  DGSIVIKSRHPL----GPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKR 88

Query: 63  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELS--- 119
            V  ++ +   LG+     V+I + NSI   +  L  +  G  A+  +P Y  S +S   
Sbjct: 89  AVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAY--SLMSHDH 146

Query: 120 ---KQVKDS-NPKLVITVP-ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
              K + D   P++V       + +     L A+ L     V  +G     + I +F DL
Sbjct: 147 AKLKHLFDLVKPRVVFAQSGAPFARA----LAALDLLDVTVVHVTGPGEGIASI-AFADL 201

Query: 175 IELSGSVTDIPDVSVKQT--DAAA-LLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQEL 230
              +   T     ++     D  A  L++SG+TG+ K VI T +   A  ++        
Sbjct: 202 --AATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPRE 259

Query: 231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV-VSMGK---FDIEMALRAIEKYRVTV 286
                 V L  +P  H  G +      L  G  + +  GK      E  +R + +   TV
Sbjct: 260 PDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTV 319

Query: 287 WWVVPPIILALAK-----NSLVRKFDISSLKLVGSGAAPLGKELMEDCQK 331
           +  VP     LA+     ++L R F   +L+L+  G A L  +L E  Q 
Sbjct: 320 YGNVPAGYAMLAEAMEKDDALRRSF-FKNLRLMAYGGATLSDDLYERMQA 368

Length = 624

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 68/314 (21%), Positives = 114/314 (36%), Gaps = 75/314 (23%)

Query: 30  VHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           +H L    A  +   +A++  D  ESL++++      +++   R  G+  +  V +    
Sbjct: 1   LHELVEAQAERTPDAIAVVCGD--ESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRR 58

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S    +  L V+  GA     +P Y    L+  ++D+  +LV+T         D +  A 
Sbjct: 59  SPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLT---------DPDDLAY 109

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                                    +I  SGS                       TG  K
Sbjct: 110 -------------------------VIYTSGS-----------------------TGRPK 121

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSM 267
           GV + H+N  AA+L+  A      E    VL    +   F LSV  ++  L  G  VV  
Sbjct: 122 GVAIEHRN--AAALLQWAAAVFSAEELAGVLAATSI--CFDLSVFEIFVPLSTGGRVVLA 177

Query: 268 GKFDIEMALRAIE-KYRVTVWWVVPPIILALAK-NSLVRKFDISSLKLVGSGAAPLGKEL 325
              D  +AL  +  K  VT+   VP     L + ++L      SS++ V     PL +EL
Sbjct: 178 ---DNALALPDLPAKAEVTLINTVPSAARELLRHDALP-----SSVRTVNLAGEPLPQEL 229

Query: 326 MEDCQKNIPGATIF 339
           ++          ++
Sbjct: 230 VQRLYALPQVERVY 243

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 68/318 (21%), Positives = 126/318 (39%), Gaps = 29/318 (9%)

Query: 25   PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            P+   VH L    A      +A++    +E L++++      +++H+    G+  + +V 
Sbjct: 4548 PATRCVHQLVAERARMTPDAVAVVF--DEEKLTYAELNRRANRLAHALIARGVGPEVLVG 4605

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            I    S    +  L V+  G      +P Y    L+  ++DS   L++T   L  +   L
Sbjct: 4606 IAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQR---L 4662

Query: 144  NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
             +P  L        +S  + R           +  G     P V +   + A ++Y+SG+
Sbjct: 4663 PIPDGL--------ASLALDRDE---------DWEGFPAHDPAVRLHPDNLAYVIYTSGS 4705

Query: 204  TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
            TG  KGV ++H + +          EL  + D V+  +   F        LY  L  G  
Sbjct: 4706 TGRPKGVAVSHGSLVNHLHATGERYELTPD-DRVLQFMSFSFDGSHEG--LYHPLINGAS 4762

Query: 264  VV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            VV      +D E     I ++RVTV    P  +  LA+++  R  +  SL++   G   +
Sbjct: 4763 VVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHA-ERDGEPPSLRVYCFGGEAV 4821

Query: 322  GKELMEDCQKNIPGATIF 339
             +   +   + +    +F
Sbjct: 4822 AQASYDLAWRALKPVYLF 4839

Length = 5163

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 58/255 (22%)

Query: 25  PSFSMVHFLFRNSASYSSKLA--LID--ADSD---ESLSFSQFKSIVIKVSHSFRHLGIT 77
           P+ ++V  + R +     KLA   +D   + D     L++SQF +    V    +   +T
Sbjct: 19  PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ--VT 76

Query: 78  KK-DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE------LSKQVKDSNPKLV 130
           K  D V I AP ++ + I F G +  G IA    P++  +E      L   + D  P  +
Sbjct: 77  KPGDRVAILAPQNLDYLIAFFGALYAGRIAV---PLFDPAEPGHVGRLHAVLDDCTPSAI 133

Query: 131 ITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD-- 186
           +T  +  + V+      PA                   ++++          V  +PD  
Sbjct: 134 LTTTDSAEGVRKFFRARPA---------------KERPRVIA----------VDAVPDEV 168

Query: 187 ------VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVL 239
                     +   A L Y+SG+T +  GV +TH N     L +I A   L G+     +
Sbjct: 169 GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDA---LEGQEGDRGV 225

Query: 240 CVLPMFHVFGLSVIL 254
             LP FH  GL  +L
Sbjct: 226 SWLPFFHDMGLITVL 240

Length = 631

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 63/272 (23%), Positives = 113/272 (41%), Gaps = 30/272 (11%)

Query: 28  SMVHFLFRNSASYSSKLAL--IDADSDES--LSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
           ++V  L R +A    +LAL  +  D  E   LS+         ++ + +         VL
Sbjct: 10  TLVQALQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASFGDRAVL 69

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE-----LSKQVKDSNPKLVITVPELWD 138
           +F P+   +   F G +  G IA  A P  +        L   + D+ P+L++TV +L D
Sbjct: 70  LF-PSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRD 128

Query: 139 KVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL 198
            +  +                   + + +++    L           + +++  D A L 
Sbjct: 129 SLLQME--------------ELAAANAPELLCVDTL--DPALAEAWQEPALQPDDIAFLQ 172

Query: 199 YSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258
           Y+SG+T + KGV ++H N +A   +I     +    D V++  LP++H  GL   L   +
Sbjct: 173 YTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPI 232

Query: 259 QKG-NCVVSMGKFDIEMALR---AIEKYRVTV 286
             G  CV+    + +E  LR   AI +Y  T+
Sbjct: 233 FSGVPCVLMSPAYFLERPLRWLEAISEYGGTI 264

Length = 4334

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 78/326 (23%), Positives = 131/326 (40%), Gaps = 44/326 (13%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           + FL R S  Y ++ ++I   +    ++ Q      +++ S   L ITK DVV + APN+
Sbjct: 17  ITFLKRASECYPNRTSIIYGKT--RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNT 74

Query: 90  -----IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD-- 142
                +HF      V   GA+ +  N     + ++  ++ + PK++          ++  
Sbjct: 75  PAMYEMHF-----AVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVL 129

Query: 143 ---------LNLPAVLLGSKD---KVSS-----SGLISRSSKIVSFHDLIELSGSVTDIP 185
                    LNLP + +   D   + SS       LI R     S      L   +  I 
Sbjct: 130 HLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPS------LVARMFRIQ 183

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245
           D    + D  +L Y+SGTT   KGV+++H+    ++L      E+      V L  LPMF
Sbjct: 184 D----EHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEM--GTCPVYLWTLPMF 237

Query: 246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
           H  G +   +    +G   V M         + IE + VT    VP +   L K + +  
Sbjct: 238 HCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL 296

Query: 306 FDISSLKLVGSGAAPLGKELMEDCQK 331
              S    V +G +P    L++  Q+
Sbjct: 297 SPRSGPVHVLTGGSPPPAALVKKVQR 322

Length = 579

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 60/219 (27%)

Query: 53  ESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           ++ ++S+   +V++ +H       +   D V I   NS  F   +L + +IGA+ +  N 
Sbjct: 4   KTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINY 63

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
             +   L   +K S  K VI  P+                       + LI         
Sbjct: 64  NLSGDPLIHCLKISGAKFVIVDPD---------------------DPAALI--------- 93

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
                                      Y+SGTTG+ KG  ++ +  +  S  +S    L 
Sbjct: 94  ---------------------------YTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQ 126

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270
              D    C +P++H     + L   L  G  +    KF
Sbjct: 127 FP-DRTYTC-MPLYHGTAAFLGLCYCLGSGGTLCLSRKF 163

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 31/244 (12%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
            ++  +   + +Y   +A       + L++ Q K    +++   +   + KK  ++++  
Sbjct: 1   KLIEAIQAFAETYPQTIAY--RYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGH 58

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD-SNPKLVITVPELWDKVKDLNLP 146
              H  + FLG I  G  A         SE  + + + + P+LVI   EL      ++  
Sbjct: 59  MEPHMLVAFLGSIKSGH-AYIPVDTSIPSERIEMIIEAAGPELVIHTAEL-----SIDAV 112

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
                         +I+     +S  +  E SG      D +VK  D   ++Y+SG+TG 
Sbjct: 113 GT-----------QIIT-----LSALEQAETSGGPVSF-DHAVKGDDNYYIIYTSGSTGN 155

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVV 265
            KGV ++H N ++ +  + A   L        L   P    F LSV+ LY  L  G  + 
Sbjct: 156 PKGVQISHDNLVSFTNWMLADFPLSEGK--QFLNQAP--FSFDLSVMDLYPCLASGGTLH 211

Query: 266 SMGK 269
            + K
Sbjct: 212 CLDK 215

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 15/160 (9%)

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIA---ASLMISAHQELVGELDHVVLCVLPM 244
                D A +L++SGT  + KGV LTH N +A   A L   + +E     D V++  LP 
Sbjct: 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKE-----DDVMMSFLPP 233

Query: 245 FHVFGLSVILYDQLQKGNCVV-SMGKFDIEMALRAIEKYRVTVWWVVP---PIILALAKN 300
           FH +G +      L  G  VV +      +  +  I++ +VT     P     IL  AK 
Sbjct: 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK 293

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
               +  + SL+ V  G       L ++  K  P   + Q
Sbjct: 294 Q---ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQ 330

Length = 539

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 70/302 (23%), Positives = 123/302 (40%), Gaps = 35/302 (11%)

Query: 25   PSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            PS  +VH L     A      AL+  D  + LS+++      +++H    +G+    +V 
Sbjct: 3092 PSERLVHQLIEAQVARTPEAPALVFGD--QQLSYAELNRRANRLAHRLIAIGVGPDVLVG 3149

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            +    S+   +  L V+  G      +P Y    L+  ++DS  KL++T   L ++    
Sbjct: 3150 VAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQ---- 3205

Query: 144  NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
             LPA                     ++  D ++L+G   + P   V   + A ++Y+SG+
Sbjct: 3206 -LPAP---------------AGDTALTL-DRLDLNGYSENNPSTRVMGENLAYVIYTSGS 3248

Query: 204  TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGN 262
            TG  KGV + H    A +  +    E   ELD     +L M   F  +       L  G 
Sbjct: 3249 TGKPKGVGVRHG---ALANHLCWIAEAY-ELDANDRVLLFMSFSFDGAQERFLWTLICGG 3304

Query: 263  CVVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK--LVGSGA 318
            C+V      +D E   +AI  +R+++    P  +   A+++     D +SL   + G  A
Sbjct: 3305 CLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--DCASLDIYVFGGEA 3362

Query: 319  AP 320
             P
Sbjct: 3363 VP 3364

Length = 3956

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 63/277 (22%), Positives = 107/277 (38%), Gaps = 50/277 (18%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS-- 89
           FL R +  Y  + A+I  D     ++++  +   +++ +    GI + D V +  PN   
Sbjct: 23  FLERAAEVYPDRPAVIHGD--RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPA 80

Query: 90  ---IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
               HF     GV   GA+ +T N     + ++  ++    K++I   E  +  ++    
Sbjct: 81  MVEAHF-----GVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVARE---- 131

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS--VTDI----------PDVSVKQT-- 192
                      +  L+     +V   D  E  G   +  +          PD +      
Sbjct: 132 -----------ALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPDFAWTLPAD 180

Query: 193 --DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVF 248
             DA AL Y+SGTTG  KGV+  H+    A L   ++  L   +    V L  LPMFH  
Sbjct: 181 EWDAIALNYTSGTTGNPKGVVYHHR---GAYLNALSNI-LAWGMPKHPVYLWTLPMFHCN 236

Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
           G         + G   V + K D ++    I ++ VT
Sbjct: 237 GWCFPWTVAARAGT-NVCLRKVDPKLIFDLIREHGVT 272

Length = 545

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 53/259 (20%), Positives = 96/259 (37%), Gaps = 49/259 (18%)

Query: 25  PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
             FS   + +R+ A      +AL    +DE L++ Q  + + +++  F   G+ +   V 
Sbjct: 2   MIFSD--WPWRHWAQVRPQAIALRL--NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVA 57

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           +   NS    + +L ++  GA     NP      L + +        +    L  +    
Sbjct: 58  LRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALV---LEGENTFS 114

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
            L ++ L   +   +          V++                       A +  +SG+
Sbjct: 115 ALTSLHLQLVEGAHA----------VAWQP------------------QRLATMTLTSGS 146

Query: 204 TGVSKGVILTHKNFIAA-----SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258
           TG+ K  + T +  +A+     SLM    Q      D  +L  LP+FHV G   I++  L
Sbjct: 147 TGLPKAAVHTAQAHLASAEGVLSLMPFTAQ------DSWLLS-LPLFHVSGQG-IVWRWL 198

Query: 259 QKGNCVVSMGKFDIEMALR 277
             G  +V   K  +E AL 
Sbjct: 199 YAGATLVVRDKQPLEQALA 217

Length = 458

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA 219
           +IV++  L+   G  +  P    K  D A + Y+SGTTG  KGV+LTH N IA
Sbjct: 197 EIVTYSKLLAQ-GRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIA 248

Length = 651

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 35/179 (19%)

Query: 171 FHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-- 227
           F  L E            V+     A + Y+SG+TG  KGV L+     AA+L   A   
Sbjct: 90  FATLGEDLYIALRPSANPVELPAGTAKITYTSGSTGQPKGVCLS-----AAALETVAQSL 144

Query: 228 QELVGELDHVV-LCVLPMFHVFGLSVIL------YDQLQKGNCVVSM----------GKF 270
            E +  L+    LC+LP      L+ +L      Y  L  G  V+ +             
Sbjct: 145 AEAIAILEPERHLCLLP------LATLLENIAGVYAPLLMGATVILVPLAELGLSGSSGL 198

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELME 327
           D    + A+ +++     +VP +++AL  A        +  SL+ V  G A +   L++
Sbjct: 199 DPAQFVAALSRWQPHSLILVPQLLMALVAAVEQGPLPPE--SLRFVAVGGARVSPSLLQ 255

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +AL D D   +LS+++      +++   R LG+   D V +    S       L ++  
Sbjct: 3   AIALRDDD--RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           GA     +P Y    L   ++D+ P L++T P+
Sbjct: 61  GAAYVPLDPSYPAERLQYMLEDAEPALLLTDPD 93

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 36/301 (11%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K+A+ +  +D  L++  +   V KV++       +K   + I   N I F   F G    
Sbjct: 17  KIAIKE--NDRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMA 73

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           G      +  +   EL +++  SN  +++T     + + D     + +   D+     +I
Sbjct: 74  GWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEI---DEWK--RMI 128

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
            +     +          + ++      Q     + ++SG+TG  K  +   ++++  S 
Sbjct: 129 EKYLPTYAP---------IENV------QNAPFYMGFTSGSTGKPKAFLRAQQSWLH-SF 172

Query: 223 MISAHQELVGELDHVVLCVLPMFHVFGLSVILY---DQLQKGNCVVSMGKFDIEMALRAI 279
             + H   +   D V L    + H    S+ LY     L  G  V  M KF     L  +
Sbjct: 173 DCNVHDFHMKREDSV-LIAGTLVH----SLFLYGAISTLYVGQTVHLMRKFIPNQVLDKL 227

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           E   ++V + VP ++ +L K     +   + +K++ SGA     E  E  +   P A ++
Sbjct: 228 ETENISVMYTVPTMLESLYK---ENRVIENKMKIISSGAK-WEAEAKEKIKNIFPYAKLY 283

Query: 340 Q 340
           +
Sbjct: 284 E 284

Length = 487

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 61/269 (22%)

Query: 19  LVLPSDPSFSMVHFLFRNSASYSSKLA--LIDADSDES-----LSFSQFKSIVIKVSHSF 71
           + LP  P  +++  + RN A+    +A   +D     +     L+++Q    +  V    
Sbjct: 28  IALP--PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARL 85

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT------VSELSKQVKDS 125
           + +     D V I AP  I +   F   I  G IA    P++          L   ++D+
Sbjct: 86  QQV-AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAV---PLFAPELPGHAERLDTALRDA 141

Query: 126 NPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
            P +V+T     + V+    NLP +               R  +++          ++  
Sbjct: 142 EPTVVLTTTAAAEAVEGFLRNLPRL---------------RRPRVI----------AIDA 176

Query: 184 IPD--------VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGEL 234
           IPD        V +   D + L Y+SG+T    GV +TH+      + MI +    +  L
Sbjct: 177 IPDSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILS----IDLL 232

Query: 235 DHVVLCV--LPMFHVFGLSVILYDQLQKG 261
           D     V  LP++H  GLS+I +  +  G
Sbjct: 233 DRNTHGVSWLPLYHDMGLSMIGFPAVYGG 261

Length = 612

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 25/76 (32%), Positives = 40/76 (52%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           SL+F +    V +++     LG+ + D V + A NSI F + FL ++ +GA+    NP  
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 114 TVSELSKQVKDSNPKL 129
              EL +Q+ D  P L
Sbjct: 61  PQEELQQQLADLQPDL 76

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 241
            + P       D   L+++SGT+G  K V  TH+   +A +M++    L    D V    
Sbjct: 142 AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGP--DDVCYVS 199

Query: 242 LPMFH 246
           +P+FH
Sbjct: 200 MPLFH 204

Length = 529

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 68/329 (20%), Positives = 128/329 (38%), Gaps = 63/329 (19%)

Query: 45  ALIDADSDES---LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101
           AL+  D       +++++ +  V  ++ + R LG+   D V  + PN     +  L   +
Sbjct: 102 ALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATAS 161

Query: 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKDL--NLPAV-- 148
           +GAI S+ +P +    +  + +   PKL+ TV             DKV ++   LP +  
Sbjct: 162 VGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRA 221

Query: 149 -----LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV--SVKQTDAAALLYSS 201
                 LG ++          + KI    DL + + +      V   +       +L+SS
Sbjct: 222 VVHIPYLGPRETE--------APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSS 273

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELV-------GE-LDHVVLCVLPMFH------V 247
           GTTG+ K ++ +     A   ++   +E         G+ L +       M++       
Sbjct: 274 GTTGLPKCIVHS-----AGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWNWLVSGLA 328

Query: 248 FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRK 305
            G +++LYD         S G     +     E+   T++      ++A  K  +   R 
Sbjct: 329 TGATLVLYDG--------SPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPART 380

Query: 306 FDISSLKLVGSGAAPL---GKELMEDCQK 331
            D+S+L+ V S  +PL   G   + D  K
Sbjct: 381 HDLSALQCVASTGSPLPPDGFRWVYDEIK 409

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 41/276 (14%)

Query: 66  KVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124
           +++ +   LG+   D V   A N   H    + GV   GA+  T NP     +++  V  
Sbjct: 51  QLAQALAALGVEPGDRVGTLAWNGYRHLEAYY-GVSGSGAVCHTINPRLFPEQIAYIVNH 109

Query: 125 SNPKLV---ITVPELWDKVKDLNLPAV----LLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
           +  + V   +T   L D +     P V     +     + +      S+ ++ +  L+  
Sbjct: 110 AEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLPAG-----STPLLCYETLVGA 163

Query: 178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN-----FIAA---SLMISAHQE 229
                D P     Q  A++L Y+SGTTG  KG + +H++     + AA   ++ +SA   
Sbjct: 164 QDGDYDWPRFDENQ--ASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARD- 220

Query: 230 LVGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTV 286
                   VL V+PMFHV  +GL    Y     G  +V  G   D +     IE  RVT 
Sbjct: 221 -------AVLPVVPMFHVNAWGLP---YSAPLTGAKLVLPGPDLDGKSLYELIEAERVTF 270

Query: 287 WWVVPPIILALAKNSLVRKFDISSLK--LVGSGAAP 320
              VP + L L  +        S+L+  ++G  A P
Sbjct: 271 SAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACP 306

Length = 539

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 20/192 (10%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            ++ S+ +S V +V+++   LG  K D + I  P ++H  I +L +I  G +  +    +
Sbjct: 208 RMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSF 267

Query: 114 TVSELSKQVKDSNPKLVIT----------VPELWDKVKDLNLP-AVLLGSKDKVSSSGLI 162
             SE++ ++K S  K + T          +P L+ +V +   P A++L +  K     L 
Sbjct: 268 APSEIATRLKISKAKAIFTQDVIVRGGKSIP-LYSRVVEAKAPKAIVLPADGKSVRVKL- 325

Query: 163 SRSSKIVSFHDLIELSGSVTDIPD--VSVKQTDAAA--LLYSSGTTGVSKGVILTHKNFI 218
                 +S+ D +  +  +   PD   +V+Q   A   +L+SSGTTG  K +  T    +
Sbjct: 326 --REGDMSWDDFLARANGL-RRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPL 382

Query: 219 AASLMISAHQEL 230
            A+    AH ++
Sbjct: 383 RAAADAWAHLDI 394

Length = 728

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 23/186 (12%)

Query: 29   MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
            +   L   +     ++AL+      SL +++  +   +++H  R  G+     V I A  
Sbjct: 1133 LPELLNEQARQTPERIALVWDG--GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAER 1190

Query: 89   SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
            S    +  L ++  G      +P Y    L+  + DS  +L++T   L ++     LP  
Sbjct: 1191 SPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLER-----LPQA 1245

Query: 149  LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                 + VS+  L           D + L    +  P + +   + A ++Y+SG+TG  K
Sbjct: 1246 -----EGVSAIAL-----------DSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPK 1289

Query: 209  GVILTH 214
            GV  TH
Sbjct: 1290 GVGNTH 1295

Length = 4334

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 29/222 (13%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY- 113
           +++++    V  ++ +   LG++ +  ++I + NSI   +  L  +  G   +  +P Y 
Sbjct: 26  VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85

Query: 114 TVSE----LSKQVKDSNPKLVIT--VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
            +S+    L        P  V           +  L L  V +     V+  G     + 
Sbjct: 86  LLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPV-----VAVRGAPGGPA- 139

Query: 168 IVSFHDLIELSGSVTDIPDVS-----VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
            ++F  L+    +      V      V     A  L++SG+TG+ K VI TH+   A   
Sbjct: 140 -IAFAALLATPPT----AAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQA 194

Query: 223 MISAHQELVGELDH---VVLCVLPMFHVFGLSVILYDQLQKG 261
           MI    +    L     V++  LP  H FG +      L  G
Sbjct: 195 MI---AQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNG 233

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 38/219 (17%)

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           G +    N     + L+  ++ ++ +L++T  E    +  L+LP V +          L 
Sbjct: 76  GYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRV----------LD 125

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN--FIAA 220
             +    ++ +L+  +G++T   +V     D   L+++SGTTG  K V  +H    F   
Sbjct: 126 VDTP---AYAELVAAAGALTPHREVDAM--DPFMLIFTSGTTGAPKAVRCSHGRLAFAGR 180

Query: 221 SLMISAHQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMAL 276
           +L       L    D V    +P+FH    + G +      +  G  V    KF     L
Sbjct: 181 ALT--ERFGLTR--DDVCYVSMPLFHSNAVMAGWAPA----VASGAAVALPAKFSASGFL 232

Query: 277 RAIEKYRVTVW-WVVPPI--ILAL------AKNSLVRKF 306
             + +Y  T + +V  P+  ILA       A N L   F
Sbjct: 233 DDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAF 271

Length = 540

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 67/294 (22%), Positives = 115/294 (39%), Gaps = 46/294 (15%)

Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA-- 101
           +AL   D   +L + +  + V  ++   R   +++   VL+ + N    P  +L V+A  
Sbjct: 31  IALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNG---PETYLSVLACA 87

Query: 102 -IGAIASTAN---PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
            +GAIA  A+   P+  +    +          IT P            A L+    K++
Sbjct: 88  KLGAIAVMADGNLPIAAIERFCQ----------ITDPA-----------AALVAPGSKMA 126

Query: 158 SSGLISRSSKIVSFH-DLIELSGSVTDIPDVSVKQT-------DAAALLYSSGTTGVSKG 209
           SS +      I     D+  ++       D +           D  A++++SGTTG  K 
Sbjct: 127 SSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKA 186

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVV----LCVLPMFHVFGLSVILYDQLQKGNCVV 265
           V+L ++ F A   ++    E +  +  VV       LP  H+ GL  IL   +  G CV 
Sbjct: 187 VLLANRTFFAVPDILQK--EGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT 244

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAA 319
             G  +    L  +    V    +VP ++  L          + SL+LVG G +
Sbjct: 245 --GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGS 296

Length = 540

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 14/149 (9%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           SSGTTG       T K     A  L  S +   V + D V           GL   L+  
Sbjct: 98  SSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLG--LHYG 155

Query: 258 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 314
            ++ G  V+ +   + E  L  ++ ++ TV    P  +L LA+ +     D    SLK  
Sbjct: 156 AERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKG 215

Query: 315 GSGAAPLGKELMEDCQKNIP---GATIFQ 340
             GA P  +E+    +K I    G   F 
Sbjct: 216 IFGAEPWSEEM----RKVIENRFGCKAFD 240

Length = 438

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 59/304 (19%), Positives = 104/304 (34%), Gaps = 29/304 (9%)

Query: 25   PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
            P    VH LF      +   A+  A  ++ LS+++      +++H     G+    +V +
Sbjct: 3054 PLERGVHRLFEEQVERTPD-AVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGV 3112

Query: 85   FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                S+   +  L ++  G      +P Y    L+  ++DS  +L+++   L        
Sbjct: 3113 AVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-------- 3164

Query: 145  LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
                 L     V     + R  +  +  +           P +     + A ++Y+SG+T
Sbjct: 3165 ----RLPLAQGVQVL-DLDRGDENYAEAN-----------PAIRTMPENLAYVIYTSGST 3208

Query: 205  GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
            G  KGV + H         +     L G  D V+      F VF     L+  L  G  V
Sbjct: 3209 GKPKGVGIRHSALSNHLCWMQQAYGL-GVGDRVLQFTTFSFDVFVEE--LFWPLMSGARV 3265

Query: 265  VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-SLVRKFDISSLKLVGSGAAPLGK 323
            V  G  D       +E        V+      L            +SLK +  G   L  
Sbjct: 3266 VLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPA 3325

Query: 324  ELME 327
            +L +
Sbjct: 3326 DLQQ 3329

Length = 5163

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 67/307 (21%), Positives = 108/307 (35%), Gaps = 49/307 (15%)

Query: 41  SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 100
           S  +A+I  +     S+ +       ++ S R  GI   D  L+   N   F I F  ++
Sbjct: 37  SDAIAVICGE--RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALL 94

Query: 101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSG 160
            +G     A   +  SEL+       P L+I          D      L    D +++  
Sbjct: 95  KLGVAPVNALFSHQRSELNAYASQIEPALLIA---------DRQHA--LFSDDDFLNTLV 143

Query: 161 LISRSSKIVSFH---------DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
               S ++V            D I       D         + A    S G+TG  K + 
Sbjct: 144 AEHSSLRVVLLLNDDGEHSLDDAINHPA--EDFTATPSPADEVAFFQLSGGSTGTPKLIP 201

Query: 212 LTHKNF---IAASLMI---SAHQELVGELDHVVLCVLPMFHVFGLSV-----ILYDQLQK 260
            TH ++   +  S+ I   +             LC LP  H + +S      +       
Sbjct: 202 RTHNDYYYSVRRSVEICGFTPQTRY--------LCALPAAHNYPMSSPGALGVFL----A 249

Query: 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP-IILALAKNSLV-RKFDISSLKLVGSGA 318
           G  VV        +    IEK++V V  +VPP + L L   +    +  ++SLKL+  G 
Sbjct: 250 GGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGG 309

Query: 319 APLGKEL 325
           A L + L
Sbjct: 310 ARLSETL 316

Length = 536

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 20/84 (23%), Positives = 36/84 (42%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S++Q      +V++  R  G+ + D VL+  PN        L  I +GA+   A  + T
Sbjct: 1   YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60

Query: 115 VSELSKQVKDSNPKLVITVPELWD 138
            ++L  +     PK ++      D
Sbjct: 61  PADLRDRFSRGKPKAIVADETRAD 84

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 41/223 (18%)

Query: 40  YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
           Y  +  L +A     L +   ++     +     LG+   D V + A     F   F   
Sbjct: 40  YDRRGQLEEA-----LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFAC 94

Query: 100 IAIGAI-ASTANPV-------YTVSELSKQVKDSNPKLVITVPELWDKVKD--LNLPAVL 149
              G +      P+       Y +++L   +  + P  +IT  EL   V +     P + 
Sbjct: 95  QYAGLVPVPLPLPMGFGGRESY-IAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLH 153

Query: 150 LGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
           + S                        L  +   +P  +    D A L YSSG+T   +G
Sbjct: 154 VLSHA------------------WFKALPEADVALPRPT--PDDIAYLQYSSGSTRFPRG 193

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVVLCV--LPMFHVFGL 250
           VI+TH+  +A    IS     V   D    CV  LP +H  GL
Sbjct: 194 VIITHRALMANLRAISHDGLKVRPGDR---CVSWLPFYHDMGL 233

Length = 579

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 197 LLYSSGTTGVSKGV-------ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG 249
           +L +SGTTG  KG        I T K  +  +    A +          + V PMFH +G
Sbjct: 201 ILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPW-RAEE--------PTVIVAPMFHAWG 251

Query: 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            S ++         +V+  +FD E  L  I+++R T   VVP
Sbjct: 252 FSQLVL-AASLACTIVTRRRFDPEATLDLIDRHRATGLAVVP 292

Length = 537

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 64/321 (19%), Positives = 121/321 (37%), Gaps = 34/321 (10%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P    VH LF      + + A   A  +E+L +++      +++H+    G+    +V +
Sbjct: 508 PLQRGVHRLFEEQVERTPE-APALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGV 566

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK-DL 143
               SI   +  L ++  G      +P Y    L+  ++DS  +L+++   L  K+    
Sbjct: 567 AMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAA 626

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
            +  + L   D+ ++                  L G   + P   +   + A ++Y+SG+
Sbjct: 627 GVQVLDL---DRPAA-----------------WLEGYSEENPGTELNPENLAYVIYTSGS 666

Query: 204 TGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKG 261
           TG  KG    H+        M  A+   VG+    VL   P    F +SV   +  L  G
Sbjct: 667 TGKPKGAGNRHRALSNRLCWMQQAYGLGVGD---TVLQKTPF--SFDVSVWEFFWPLMSG 721

Query: 262 NCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             +V        D    +  I +  V     VP ++ A  ++  V     +SL+ +    
Sbjct: 722 ARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSG 779

Query: 319 APLGKELMEDCQKNIPGATIF 339
             L  +  E     +P A ++
Sbjct: 780 EALPADAQEQVFAKLPQAGLY 800

Length = 5163

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 58/268 (21%), Positives = 116/268 (43%), Gaps = 51/268 (19%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF----------------LGV 99
           ++ +   IVIK+ +S R +G+  +    I+  NS  + I                  LG 
Sbjct: 81  TYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGA 140

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSS 158
            A+  I S +       E  K       +L  T P   + +K + +   V    K++  +
Sbjct: 141 GAVEFIISHSEVSIVFVEEKKI-----SELFKTCPNSTEYMKTVVSFGGVSREQKEEAET 195

Query: 159 SGLISRSSKIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
            GL+     I ++ + ++L  G   D+P    K++D   ++Y+SGTTG  KGV++++++ 
Sbjct: 196 FGLV-----IYAWDEFLKLGEGKQYDLP--IKKKSDICTIMYTSGTTGDPKGVMISNESI 248

Query: 218 IAAS-----LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG---- 268
           +        L+ SA+  L   +  V L  LP+ H+F   +          C +  G    
Sbjct: 249 VTLIAGVIRLLKSANAAL--TVKDVYLSYLPLAHIFDRVI--------EECFIQHGAAIG 298

Query: 269 --KFDIEMALRAIEKYRVTVWWVVPPII 294
             + D+++ +  + + + T++  VP ++
Sbjct: 299 FWRGDVKLLIEDLGELKPTIFCAVPRVL 326

Length = 666

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 52/232 (22%), Positives = 87/232 (37%), Gaps = 33/232 (14%)

Query: 65  IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124
            ++    R+ G++  D VL+  P+S       L  +A G +A  ANP     + +   ++
Sbjct: 41  ARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARN 100

Query: 125 SNPKLVITVPELWDKVKDLNL--PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182
           + P LV+T   L D+ +   +   A L+    +V+                   + G   
Sbjct: 101 TEPALVVTSDALRDRFQPSRVAEAAELMSEAARVAPG-------------GYEPMGG--- 144

Query: 183 DIPDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKN-FIAASLMISAHQELVGELDHVVLC 240
                     DA A   Y+SGTTG  K  I  H +       M      L  E     LC
Sbjct: 145 ----------DALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPE--DTGLC 192

Query: 241 VLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
              M+  +GL   ++  L  G + V++      E A     ++  +V + VP
Sbjct: 193 SARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVP 244

Length = 705

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 26/167 (15%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
            E L++ Q K     ++     L +  K  +++F   S      FLG +  G  A     
Sbjct: 25  GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG-HAYIPVD 83

Query: 112 VYTVSELSKQVKD-SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS 170
           V + +E  + + + + P L+I   EL      L +  +                   +++
Sbjct: 84  VSSPAERIEMIIEVAKPSLIIATEEL-----PLEILGI------------------PVIT 120

Query: 171 FHDLIELSGSVTDI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKN 216
             +L ++  +      D +VK  D   ++++SGTTG  KGV ++H N
Sbjct: 121 LDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDN 167

Length = 503

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 21/113 (18%)

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV------LCVLP 243
           ++TD   ++Y+SGTTG  KGVILT++  IA  L       L+   D V          LP
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLST---DHLLKVTDRVATEEDSYFSYLP 274

Query: 244 MFHVFGLSVILYDQLQKGNCV---VSMG--KFDIEMALRAIEKYRVTVWWVVP 291
           + HV       YDQ+ +  C+    S+G  + DI   +  ++  + T++  VP
Sbjct: 275 LAHV-------YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVP 320

Length = 660

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           V  +  DAA +L++SG+ G  KGV+ +HK+ +A    I    +     +   +  LP+FH
Sbjct: 360 VKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTP--NDRFMSALPLFH 417

Query: 247 VFGLSVILYDQLQKG 261
            FGL+V L+  L  G
Sbjct: 418 SFGLTVGLFTPLLTG 432

Length = 718

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 42.0 bits (100), Expect = 3e-04
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +A++  D  +SL++ +      +++H  R  G+   D+V I    S    +  L V+  
Sbjct: 3   AVAVVFGD--QSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           GA     +P Y    L+  ++DS  KL++T P+
Sbjct: 61  GAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD 93

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 62/292 (21%), Positives = 101/292 (34%), Gaps = 67/292 (22%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           LS+++ +    +V++    LG+   D V    P +    +  L    +GAI     P++T
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYV---PLFT 57

Query: 115 ---VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                 +  ++  S  K+V+T      K+ D                             
Sbjct: 58  AFGPKAIEYRLGHSGAKVVVTNAANRGKLDD----------------------------- 88

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
                                D  A +Y+SGTTG+ KGV +   N +AA     A+    
Sbjct: 89  ---------------------DLFAQMYTSGTTGLPKGVPVPL-NALAA---FYAYMRYA 123

Query: 232 GEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVW 287
            +L   D       P +  +GL   +   L  G   V + G F  E     +E+  VT +
Sbjct: 124 IDLRDDDVFWNIADPGW-AYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNF 182

Query: 288 WVVPPIILAL-AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
              P     L A  +         L++  S   PL  E++   Q N+ G TI
Sbjct: 183 AGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEVVRWFQANL-GVTI 233

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 40.6 bits (96), Expect = 9e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 195 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 254
           A  L++SG+TG+ K VI TH+   A   M++     + E   V++  LP  H FG +  L
Sbjct: 212 AKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNL 271

Length = 614

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 24/197 (12%)

Query: 25   PSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            P   +VH L    +A+    +AL+  +  + L++ +      +++H    LG+  + +V 
Sbjct: 1571 PLARLVHQLIEDQAAATPEAVALVFGE--QELTYGELNRRANRLAHRLIALGVGPEVLVG 1628

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            I    S+   +  L ++  G      +P Y    L+  ++DS  +L++T   L  ++   
Sbjct: 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP 1688

Query: 144  N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            + L +++L  +D                      L G     P V++   + A ++Y+SG
Sbjct: 1689 DGLRSLVLDQEDD--------------------WLEGYSDSNPAVNLAPQNLAYVIYTSG 1728

Query: 203  TTGVSKGVILTHKNFIA 219
            +TG  KG    H   + 
Sbjct: 1729 STGRPKGAGNRHGALVN 1745

Length = 3956

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISA---HQELVGELDHVVLCVLPMFHVFG 249
           D A ++ +SGTTG  KG +LT     AA+L  SA   H  L G      L  LP  H+ G
Sbjct: 36  DVALVVATSGTTGTPKGAMLT-----AAALTASADATHDRLGGPGQW--LLALPAHHIAG 88

Query: 250 LSVIL 254
           L V++
Sbjct: 89  LQVLV 93

Length = 358

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+     + V  +        I   D VL F P +  F   F G +A+    +       
Sbjct: 211 LTHRNLLAQVAGIDEVLPP--IGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKE-D 267

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRS 165
              L + +K+  P ++I VP +W+KV          G  +KV+ +  + R 
Sbjct: 268 PRTLLEDLKEVRPTVMIGVPRVWEKVYK--------GIMEKVAKAPAVRRK 310

Length = 613

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFG 249
            + AL Y+SGTT   KGV+L H+    A LM +    L+  ++   V L  LPMFH  G
Sbjct: 196 QSIALGYTSGTTASPKGVVLHHR---GAYLM-ALSNALIWGMNEGAVYLWTLPMFHCNG 250

Length = 567

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 54/293 (18%), Positives = 104/293 (35%), Gaps = 37/293 (12%)

Query: 15  LRPPLVLPSDPS--FSMVHFLFRNSASYSSKLALIDA---------DSDESLSFSQFKSI 63
           +R  L+ P  P     ++    R   +  + LA+  A         D D +LS+ + +  
Sbjct: 10  VRSGLLNPPSPRAVLRLLREASRGGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRA 69

Query: 64  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 123
              ++      G+     V +   N   F      V  +GA     +  +    L+  ++
Sbjct: 70  TESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALR 129

Query: 124 DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
             +   V+   E  +++   +  AV +       +     R +        +   G +  
Sbjct: 130 AHHISTVVADNEFAERIAGAD-DAVAVIDPATAGAEESGGRPA--------VAAPGRI-- 178

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 243
                        +L +SGTTG  KGV    +   A  + ++            +   +P
Sbjct: 179 -------------VLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMP 225

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILA 296
           MFH  GL +++   +  G  V++   FD E AL     +R   +  V P++LA
Sbjct: 226 MFHGLGLGMLML-TIALGGTVLTHRHFDAEAALAQASLHRADAFTAV-PVVLA 276

Length = 516

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
           ++LS +++D +   +    E  +K+KDL         K+K    G+      I+ F D+ 
Sbjct: 244 NDLSNELEDISLGPLEYDKEKLEKIKDL---------KEKAKKLGI-----SIILFDDMT 289

Query: 176 ELSGSVTDIPDVSVKQTDA---AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 232
           +         +  ++  D     +++Y+SGT+G  KGV+L++KN     + +  H     
Sbjct: 290 K-----NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK 344

Query: 233 ELDHVVLCVLPMFHVF 248
                 L  LP+ H++
Sbjct: 345 YNPKTHLSYLPISHIY 360

Length = 746

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN03051	499	acyl-activating enzyme; Provisional	99.98
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.97
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.96
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.82
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.82
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.78
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.72
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.62
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.62
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.25
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.07
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	98.68
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	96.04
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.87
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	92.14
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	91.81
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	85.66
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	84.3
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	83.31
TIGR03590	279	PseG pseudaminic acid biosynthesis-associated prot	80.12

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-45  Score=313.94  Aligned_cols=304  Identities=23%  Similarity=0.335  Sum_probs=258.8

Q ss_pred             CCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHH
Q 019348           17 PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF   96 (342)
Q Consensus        17 ~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~   96 (342)
                      .+.++..   .|+++.++-.+++.||+.|+++...+-+.||+|+.+.++.+|..|.+.|+++||+|++..||+.+|+...
T Consensus        43 ~~ipl~~---~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~  119 (596)
T KOG1177|consen   43 SQIPLDS---ETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQ  119 (596)
T ss_pred             CCCCccc---ccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHH
Confidence            3345544   4999999999999999999998777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhcc-------C-----------CC-eEEecC
Q 019348           97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDL-------N-----------LP-AVLLGS  152 (342)
Q Consensus        97 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~-------~-----------~~-~~~~~~  152 (342)
                      +||.++|.+.+++||.+..++++..|++.+++++|+.+.+..     .+.++       +           .. ++..++
T Consensus       120 lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~e  199 (596)
T KOG1177|consen  120 LACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADE  199 (596)
T ss_pred             HHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCC
Confidence            999999999999999999999999999999999998754332     22222       0           11 222222


Q ss_pred             CCccccccccccccccccHHHHHhccCCCC----CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh
Q 019348          153 KDKVSSSGLISRSSKIVSFHDLIELSGSVT----DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ  228 (342)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~  228 (342)
                      +         ....+...+.+++....+..    ........|++.+.|.|||||||.|||+.+||.|+++++..  ...
T Consensus       200 d---------~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~--vg~  268 (596)
T KOG1177|consen  200 D---------HPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARA--VGA  268 (596)
T ss_pred             C---------CcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHH--HHH
Confidence            2         34566667777776554311    11234567899999999999999999999999999999666  444


Q ss_pred             ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccC
Q 019348          229 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD  307 (342)
Q Consensus       229 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  307 (342)
                      ..+.++++++++..|++|.+|....++.+|..|+|++++ +.|++.+.++.|.++++|.++.+|+++..|++.+.....+
T Consensus       269 r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~  348 (596)
T KOG1177|consen  269 RAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD  348 (596)
T ss_pred             HhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc
Confidence            455567889999999999999889999999999999997 6799999999999999999999999999999999999999


Q ss_pred             CCCceEEEeecccCCHHHHHHHHHhCC
Q 019348          308 ISSLKLVGSGAAPLGKELMEDCQKNIP  334 (342)
Q Consensus       308 l~~lr~~~~gG~~l~~~~~~~~~~~~~  334 (342)
                      ++++|.++.||+++|+++++.+.+...
T Consensus       349 ~s~lr~~vigGa~~s~eLlk~iv~~~~  375 (596)
T KOG1177|consen  349 LSSLRKGVIGGAPVSPELLKLIVNQMN  375 (596)
T ss_pred             hhhhhhheeCCCCCCHHHHHHHHHhhC
Confidence            999999999999999999999998543

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-43  Score=329.10  Aligned_cols=303  Identities=33%  Similarity=0.451  Sum_probs=252.4

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.+.+.+..+|+++|+++.+...++||+||.++++++|..|++.|+++||+|+|+++|+++++++++||+++|+++
T Consensus        11 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~   90 (534)
T COG0318          11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVA   90 (534)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEE
Confidence            78999999999999999999998433349999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCC----CeEEecCCCcccccccccccccc--ccHHHHHhccCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGSKDKVSSSGLISRSSKI--VSFHDLIELSGS  180 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  180 (342)
                      +|++|.+..+++.++++.+++++++++.+..........    ........          .....  ..+++.......
T Consensus        91 vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  160 (534)
T COG0318          91 VPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG----------DADDRLPITLEALAAEGPG  160 (534)
T ss_pred             eecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecc----------cccccccccHHHHhhccCC
Confidence            999999999999999999999999999874444333221    11111111          00010  245555333221


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccc--cCCCeEEEEccchhHHHHHHHHHHHHh
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV--GELDHVVLCVLPMFHVFGLSVILYDQL  258 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~~~~~~~~l  258 (342)
                       .........++++++++|||||||.||||++||+|+..+...  ....+.  ...+|++++++|++|.+|+...++.++
T Consensus       161 -~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~--~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~  237 (534)
T COG0318         161 -PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAG--IAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPL  237 (534)
T ss_pred             -cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHH--HHHHhcccCCCCceEEEecChHHHHHHHHHHHHHH
Confidence             111122267899999999999999999999999999988555  444444  688899999999999999977777889


Q ss_pred             hcCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCC-ceEEEeecccCCHHHHHHHHHhCCC
Q 019348          259 QKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       259 ~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~-lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      ..|+++++.+  .+++..++..+.++++|++.++|+++..++.+......++.+ ||.++.||++++++++++|+++|++
T Consensus       238 ~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~  317 (534)
T COG0318         238 LGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGP  317 (534)
T ss_pred             HcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCC
Confidence            9999999998  699999999999999999999999999999998877777776 9999999999999999999999986


Q ss_pred             CcccccC
Q 019348          336 ATIFQKI  342 (342)
Q Consensus       336 ~~l~~~Y  342 (342)
                      ..++++|
T Consensus       318 ~~i~~~Y  324 (534)
T COG0318         318 IAILEGY  324 (534)
T ss_pred             CceEEee
Confidence            6788887

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.9e-44  Score=338.98  Aligned_cols=333  Identities=17%  Similarity=0.270  Sum_probs=251.4

Q ss_pred             CCCCCceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCC---CcceeHHHHHHHHHHHHHHHHHc---CCCC
Q 019348            5 GYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHL---GITK   78 (342)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~~l~~~~~~la~~L~~~---g~~~   78 (342)
                      ...++++|+..+.....+.....|+.++|.+.++++|+++|+++.+.   .+++||+|+.+++.++|+.|.+.   |+++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~  118 (746)
T PTZ00342         39 NENESSVYCMKDHKKKSSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPE  118 (746)
T ss_pred             CCCCCCceecCchhhcccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            34456677655544444444447999999999999999999997422   37899999999999999999874   9999


Q ss_pred             C-----------CEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---
Q 019348           79 K-----------DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---  144 (342)
Q Consensus        79 g-----------~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---  144 (342)
                      |           |+|+|+++|+++|+++++||+++|++.||+++.++.+++.+++++++++++|++.+..+.+.+..   
T Consensus       119 g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~  198 (746)
T PTZ00342        119 KKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNEL  198 (746)
T ss_pred             CccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccC
Confidence            8           99999999999999999999999999999999999999999999999999999877766554321   


Q ss_pred             --CC-eEEecCCCccc--c--------------cccc-----------------------------------------cc
Q 019348          145 --LP-AVLLGSKDKVS--S--------------SGLI-----------------------------------------SR  164 (342)
Q Consensus       145 --~~-~~~~~~~~~~~--~--------------~~~~-----------------------------------------~~  164 (342)
                        .+ ++.++......  .              ....                                         ..
T Consensus       199 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  278 (746)
T PTZ00342        199 PHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKL  278 (746)
T ss_pred             CCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcC
Confidence              12 33333211000  0              0000                                         00


Q ss_pred             ccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccch
Q 019348          165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM  244 (342)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~  244 (342)
                      ......|++......  .........++++++|+|||||||.||||++||+|+.+.+..............|++++.+|+
T Consensus       279 ~~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL  356 (746)
T PTZ00342        279 GISIILFDDMTKNKT--TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPI  356 (746)
T ss_pred             CCEEEEHHHHHhhcc--cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcH
Confidence            000112233222211  111223456789999999999999999999999999988654322111112356899999999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcC--------CCCCc-----------
Q 019348          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN--------SLVRK-----------  305 (342)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~--------~~~~~-----------  305 (342)
                      +|++++ ...+.++..|+++++.+. ++..+++.|+++++|+++++|.+|+.+.+.        +..+.           
T Consensus       357 ~Hi~~~-~~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~  434 (746)
T PTZ00342        357 SHIYER-VIAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRK  434 (746)
T ss_pred             HHHHHH-HHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            999999 567788999999999875 899999999999999999999999988752        10000           


Q ss_pred             -----------------------cCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          306 -----------------------FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       306 -----------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                                             .-.++||.+++||+++++++.++|++.+| ++++++|
T Consensus       435 ~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gY  493 (746)
T PTZ00342        435 SNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGY  493 (746)
T ss_pred             HhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEee
Confidence                                   01268999999999999999999999887 8999988

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=8.5e-44  Score=319.70  Aligned_cols=292  Identities=24%  Similarity=0.348  Sum_probs=245.0

Q ss_pred             Hhhhcc-cCCCceEEEeCCC---CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348           33 LFRNSA-SYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (342)
Q Consensus        33 l~~~~~-~~p~~~a~~~~~~---~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  107 (342)
                      +.+... ..+|+.|++..++   .+++||+||.+.+.++|..|++ .|+ +||+|++++|+.++.++++|||+++|++.+
T Consensus        15 ~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~   93 (528)
T COG0365          15 LDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPA   93 (528)
T ss_pred             hhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEe
Confidence            455544 3478999987642   2789999999999999999986 578 999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCe--------EEecCCCccccccccccccccccHHHHHhccC
Q 019348          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA--------VLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (342)
Q Consensus       108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (342)
                      |+.+..+++++...+++++++++|+++......+......        +++...            .. ..|.+.++...
T Consensus        94 ~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r------------~~-~~~~~~~~~~~  160 (528)
T COG0365          94 VVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPR------------LG-LWYDEAVEKAS  160 (528)
T ss_pred             ecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecc------------cc-ccHHHHhhccC
Confidence            9999999999999999999999999987776655443210        111111            11 56777776654


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                        ..........+|+++|+|||||||+||||+++|+.++...... ....+...++|++++..++.|++|....++.+|.
T Consensus       161 --~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~-~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~  237 (528)
T COG0365         161 --EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT-AKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLA  237 (528)
T ss_pred             --CCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHH-HHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHh
Confidence              3444445888999999999999999999999999777664322 3334445689999999999999999888999999


Q ss_pred             cCCeEEEccC--C-CHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCC
Q 019348          260 KGNCVVSMGK--F-DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (342)
Q Consensus       260 ~G~~~v~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~  336 (342)
                      +|+++++.+.  + ++..++++++++++|.+++.|+.+++|.+....++.++++||.+.++||||+++.++++.+.++ +
T Consensus       238 ~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g-~  316 (528)
T COG0365         238 SGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALG-V  316 (528)
T ss_pred             cCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHhC-C
Confidence            9999998843  3 4999999999999999999999999999988767789999999999999999999999999998 9


Q ss_pred             cccccC
Q 019348          337 TIFQKI  342 (342)
Q Consensus       337 ~l~~~Y  342 (342)
                      +|.+.|
T Consensus       317 ~i~d~~  322 (528)
T COG0365         317 WILDIY  322 (528)
T ss_pred             CEeccc
Confidence            999887

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-42  Score=313.86  Aligned_cols=296  Identities=38%  Similarity=0.609  Sum_probs=243.1

Q ss_pred             cCCCc-eEEEeCCC-CcceeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCC
Q 019348           39 SYSSK-LALIDADS-DESLSFSQFKSIVIKVSHSFRHLG--ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT  114 (342)
Q Consensus        39 ~~p~~-~a~~~~~~-~~~~Ty~~l~~~~~~la~~L~~~g--~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~  114 (342)
                      .++++ +.+++.+. ++.+||+|+++++.++|..|.+.|  +++||+|++++||++++.++++||+..|++..+++|.+.
T Consensus        28 ~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~  107 (537)
T KOG1176|consen   28 VYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLT  107 (537)
T ss_pred             ccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccC
Confidence            33444 66766542 599999999999999999999775  889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCcccccccccccccccc-HHHHHhccCCCCCCCCCCC
Q 019348          115 VSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVS-FHDLIELSGSVTDIPDVSV  189 (342)
Q Consensus       115 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  189 (342)
                      +.++...++.++++++|++.+....+.+..    ...+.+.......   .......... ++.++....  ... ....
T Consensus       108 ~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~-~~~~  181 (537)
T KOG1176|consen  108 ASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVI---SISDLVEDLDAFEDLMPEGL--PDG-IRPV  181 (537)
T ss_pred             HHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCcc---ccccccccccchhhccccCC--Ccc-cccC
Confidence            999999999999999999998888775443    3444444321000   0011111111 445444433  222 4456


Q ss_pred             CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC
Q 019348          190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK  269 (342)
Q Consensus       190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~  269 (342)
                      ..+|++.|.|||||||.||||++||+++..+...  ..........|+.++.+|++|.+|+...+...+..|+++++.+.
T Consensus       182 ~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~--~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~  259 (537)
T KOG1176|consen  182 SEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLS--IKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRK  259 (537)
T ss_pred             CCCCeEEEecCCCCCCCCceEEEecHHHHHHHHH--hhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCC
Confidence            6799999999999999999999999999988444  33344446689999999999999996666667888888888888


Q ss_pred             CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      |++..+++.+++|++|+++++|.++..|++.+...+.+++++|.+.+||+++++.+.+++++++|+..+.++|
T Consensus       260 f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~Y  332 (537)
T KOG1176|consen  260 FDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGY  332 (537)
T ss_pred             CCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEee
Confidence            9999999999999999999999999999999878889999999999999999999999999999988999988

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=5.7e-42  Score=320.29  Aligned_cols=317  Identities=37%  Similarity=0.630  Sum_probs=261.7

Q ss_pred             eeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC
Q 019348           11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI   90 (342)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~   90 (342)
                      +++......+.+..  +|+.+.+.++++++||++|+++.+.++++||+||.++++++|+.|.+.|+++||+|+++++|+.
T Consensus         9 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~   86 (537)
T PLN02246          9 IFRSKLPDIYIPNH--LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCP   86 (537)
T ss_pred             EecCCCCCCCCCCC--CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCh
Confidence            44455555555655  7999999999999999999998655689999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCcccccccccccc
Q 019348           91 HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSS  166 (342)
Q Consensus        91 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  166 (342)
                      +++++++||+++|++++|++|..+.+++..+++.++++++++++.....+.+..    ...+.++..           ..
T Consensus        87 ~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~  155 (537)
T PLN02246         87 EFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDP-----------PE  155 (537)
T ss_pred             HHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCC-----------CC
Confidence            999999999999999999999999999999999999999999987766554332    223333221           11


Q ss_pred             ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhh--hhccccCCCeEEEEccch
Q 019348          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA--HQELVGELDHVVLCVLPM  244 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~--~~~~~~~~~d~~~~~~p~  244 (342)
                      ....+.++.....  .........++++++++|||||||.||+|+++|+++.........  ...+.+..+|++++..|+
T Consensus       156 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  233 (537)
T PLN02246        156 GCLHFSELTQADE--NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPM  233 (537)
T ss_pred             CceeHHHHhcCCC--CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeech
Confidence            2233444433222  122233456789999999999999999999999999876433211  113446788999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHH
Q 019348          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE  324 (342)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~  324 (342)
                      +|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|.++..|.+.......+++++|.+++||++++++
T Consensus       234 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~  313 (537)
T PLN02246        234 FHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKE  313 (537)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHH
Confidence            99999866788999999999999999999999999999999999999999999987766666789999999999999999


Q ss_pred             HHHHHHHhCCCCcccccC
Q 019348          325 LMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       325 ~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+.+++.|++..+++.|
T Consensus       314 ~~~~~~~~~~~~~~~~~Y  331 (537)
T PLN02246        314 LEDAFRAKLPNAVLGQGY  331 (537)
T ss_pred             HHHHHHHHcCCCeEeccc
Confidence            999999999878888877

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-42  Score=323.54  Aligned_cols=300  Identities=22%  Similarity=0.247  Sum_probs=251.8

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++.+||++|+++.  ++.+||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~  126 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE--RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARI  126 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence            48999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      +|+++..+.+++.++++.+++++++++++....+....     ...+.......      ......+..++++.....  
T Consensus       127 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--  198 (549)
T PRK07788        127 ILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDD------EPSGSTDETLDDLIAGSS--  198 (549)
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCcc------ccCCcCcccHHHHhcCCC--
Confidence            99999999999999999999999999988766654332     11111111100      011234556777665432  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G  261 (342)
                      ..  ......++.++++|||||||.||+|.++|.++...+..  ....+....+|++++..|++|.+|+ ..++.++..|
T Consensus       199 ~~--~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G  273 (549)
T PRK07788        199 TA--PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAG--LLSRVPFRAGETTLLPAPMFHATGW-AHLTLAMALG  273 (549)
T ss_pred             CC--CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHH--HHhhCCCCcCCeEEEccchHHHHHH-HHHHHHHHhC
Confidence            11  11234567899999999999999999999999887544  3334456778999999999999998 6678899999


Q ss_pred             CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHHHHHHHHhCCCCccc
Q 019348          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (342)
Q Consensus       262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~  339 (342)
                      +++++...+++..+++.++++++|++.++|++++.+++....  ...++++||.+++||+++++++.+++++.|+ ..++
T Consensus       274 ~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~  352 (549)
T PRK07788        274 STVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLY  352 (549)
T ss_pred             CEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhC-ccce
Confidence            999999889999999999999999999999999999987654  4567899999999999999999999999998 7899


Q ss_pred             ccC
Q 019348          340 QKI  342 (342)
Q Consensus       340 ~~Y  342 (342)
                      +.|
T Consensus       353 ~~Y  355 (549)
T PRK07788        353 NLY  355 (549)
T ss_pred             ecc
Confidence            888

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.4e-41  Score=318.94  Aligned_cols=326  Identities=37%  Similarity=0.618  Sum_probs=257.9

Q ss_pred             CceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECC
Q 019348            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAP   87 (342)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~   87 (342)
                      ..++.+..++.++|..+..++.+.+... ..+|+++|+++.+.+.++||+||.++++++|+.|++ .|+++||+|+++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~  100 (560)
T PLN02574         22 TGIYSSKHPPVPLPSDPNLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLP  100 (560)
T ss_pred             CeeecCCCCCCCCCCCCCCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence            4555555444455554335666666655 678999999987555689999999999999999998 99999999999999


Q ss_pred             CCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccc
Q 019348           88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK  167 (342)
Q Consensus        88 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (342)
                      |+.+++++++||+++|++++|++|..+.+++.++++.+++++++++.+....+.......+.+.......     .....
T Consensus       101 n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  175 (560)
T PLN02574        101 NSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFD-----SKRIE  175 (560)
T ss_pred             CcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcccccc-----cCccC
Confidence            9999999999999999999999999999999999999999999999877666655444444332211000     01112


Q ss_pred             cccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh--hccc-cCCCeEEEEccch
Q 019348          168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--QELV-GELDHVVLCVLPM  244 (342)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~-~~~~d~~~~~~p~  244 (342)
                      ...|.++.....  .........++++++|+|||||||.||||++||+++...+..+...  .... ...+++++..+|+
T Consensus       176 ~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  253 (560)
T PLN02574        176 FPKFYELIKEDF--DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM  253 (560)
T ss_pred             cccHHHHhhcCC--cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecch
Confidence            234555544332  2222234467899999999999999999999999998875443211  1111 2356889999999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC-CccCCCCceEEEeecccCCH
Q 019348          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV-RKFDISSLKLVGSGAAPLGK  323 (342)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~-~~~~l~~lr~~~~gG~~l~~  323 (342)
                      +|.+|+...++.++..|+++++.+++++..+++.++++++|++.++|.++..|.+.... ...+++++|.+++||+++++
T Consensus       254 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~  333 (560)
T PLN02574        254 FHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSG  333 (560)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCH
Confidence            99999977788889999999999999999999999999999999999999999987643 34578899999999999999


Q ss_pred             HHHHHHHHhCCCCcccccC
Q 019348          324 ELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       324 ~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++.++|++.++++++++.|
T Consensus       334 ~~~~~~~~~~~~~~v~~~Y  352 (560)
T PLN02574        334 KFIQDFVQTLPHVDFIQGY  352 (560)
T ss_pred             HHHHHHHHHCCCCcEEecc
Confidence            9999999999778999988

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.5e-42  Score=325.65  Aligned_cols=308  Identities=24%  Similarity=0.271  Sum_probs=244.9

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      +.++.++|.+.++++|+++|+++.  ++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         6 ~~~~~~~~~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav   83 (563)
T PLN02860          6 QAHICQCLTRLATLRGNAVVTISG--NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGI   83 (563)
T ss_pred             hhHHHHHHHHHHHhcCCceEEecC--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEE
Confidence            368999999999999999999986  789999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc---C---CCeEEecCCCccccccccccccccccHHHHHhccC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL---N---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (342)
                      ++|+++.++.+++.++++++++++++++++........   .   ...++.........   ..........+++.....
T Consensus        84 ~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~  160 (563)
T PLN02860         84 VAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV---FIFLNSFLTTEMLKQRAL  160 (563)
T ss_pred             EEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc---ccchhhccccchhccCcc
Confidence            99999999999999999999999999987653322211   1   11111111100000   000001111111111100


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                      . .........++++++|+|||||||.||+|+++|+++..+...  ....+....+|+++...|++|.+++ ..++.++.
T Consensus       161 ~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~  236 (563)
T PLN02860        161 G-TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLA--KIAIVGYGEDDVYLHTAPLCHIGGL-SSALAMLM  236 (563)
T ss_pred             c-cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHH--HHhhcCCCCCCEEEEecCchhhccH-HHHHHHHH
Confidence            0 011112345689999999999999999999999999876443  3334556788999999999999998 67889999


Q ss_pred             cCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCC--ccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348          260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (342)
Q Consensus       260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~  337 (342)
                      .|+++++.+++++..+++.++++++|++.++|+++..|++.....  ...+++||.+++||+++++++.++|++.|++++
T Consensus       237 ~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~  316 (563)
T PLN02860        237 VGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK  316 (563)
T ss_pred             cCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCc
Confidence            999999999999999999999999999999999999998765322  246789999999999999999999999998799


Q ss_pred             ccccC
Q 019348          338 IFQKI  342 (342)
Q Consensus       338 l~~~Y  342 (342)
                      +++.|
T Consensus       317 ~~~~Y  321 (563)
T PLN02860        317 LFSAY  321 (563)
T ss_pred             eecCC
Confidence            99988

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=2e-41  Score=317.20  Aligned_cols=322  Identities=32%  Similarity=0.535  Sum_probs=261.5

Q ss_pred             CceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Q 019348            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN   88 (342)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n   88 (342)
                      +.++.+..++.+.+..  .|+.+++.+.++.+|+++|+.+...++.+||+||.+++.++|+.|.+.|+++||+|+++++|
T Consensus        12 ~~~~~~~~~~~~~~~~--~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~   89 (546)
T PLN02330         12 EHIFRSRYPSVPVPDK--LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPN   89 (546)
T ss_pred             ceeeccCCCCCCCCCC--CcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            3455556665544444  79999999999999999999976556899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCcccccccccccccc
Q 019348           89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI  168 (342)
Q Consensus        89 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
                      +++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+.......+.++...          ....
T Consensus        90 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~----------~~~~  159 (546)
T PLN02330         90 VAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEK----------IEGA  159 (546)
T ss_pred             chHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCC----------CCCc
Confidence            999999999999999999999999999999999999999999999988877766655555444221          1122


Q ss_pred             ccHHHHHhccCCCC-CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHH
Q 019348          169 VSFHDLIELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV  247 (342)
Q Consensus       169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~  247 (342)
                      ..|.+++....... ........++++++++|||||||.||||.++|.++...+..............++.+...|++|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~  239 (546)
T PLN02330        160 VNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHI  239 (546)
T ss_pred             ccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHH
Confidence            34555554322101 11123345678999999999999999999999999876432111111112245789999999999


Q ss_pred             HHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCC--CceEEEeecccCCHHH
Q 019348          248 FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS--SLKLVGSGAAPLGKEL  325 (342)
Q Consensus       248 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~--~lr~~~~gG~~l~~~~  325 (342)
                      +++...++.++..|+++++.+.+++..+++.++++++|.+.++|.++..++........++.  ++|.+++||+++++++
T Consensus       240 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~  319 (546)
T PLN02330        240 YGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPEL  319 (546)
T ss_pred             HHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHH
Confidence            99867788999999999999999999999999999999999999999999987655444554  4789999999999999


Q ss_pred             HHHHHHhCCCCcccccC
Q 019348          326 MEDCQKNIPGATIFQKI  342 (342)
Q Consensus       326 ~~~~~~~~~~~~l~~~Y  342 (342)
                      .+++++.|+++++++.|
T Consensus       320 ~~~~~~~~~~~~~~~~Y  336 (546)
T PLN02330        320 LTAFEAKFPGVQVQEAY  336 (546)
T ss_pred             HHHHHHHcCCCeEEecc
Confidence            99999999779999988

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=6e-42  Score=296.88  Aligned_cols=306  Identities=19%  Similarity=0.213  Sum_probs=260.4

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.|..+++++|+|+|+++.++++++||+|+.+++.++|+.|...|++.||.|++.++|.++|+..+|+++++|++.
T Consensus        77 ~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~t  156 (649)
T KOG1179|consen   77 RTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVIT  156 (649)
T ss_pred             CcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCcee
Confidence            79999999999999999999999777999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCC----CeEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (342)
                      ..||++...+.|.|.++.++++++|++++..+.+.++..    ..+.....+      ......+..++.+.++...+..
T Consensus       157 A~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~------~~~~~~g~~~L~~~l~~~~~~~  230 (649)
T KOG1179|consen  157 AFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLG------PTSVPDGIESLLAKLSAAPKHP  230 (649)
T ss_pred             eeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecC------CCCCCchHHHHHHhhcccccCC
Confidence            999999999999999999999999999998877766521    111111110      0022233334444444333211


Q ss_pred             -C-CCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348          183 -D-IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (342)
Q Consensus       183 -~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  260 (342)
                       . .......-.++++.+|||||||.||+.+++|......+..  ....++++.+|+++..+|++|..|.+..+-.++..
T Consensus       231 vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g--~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~  308 (649)
T KOG1179|consen  231 VPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAG--FYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLH  308 (649)
T ss_pred             CCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHH--HHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhc
Confidence             1 1223445568999999999999999999999999887554  45566678999999999999999999999999999


Q ss_pred             CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (342)
Q Consensus       261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~  340 (342)
                      |+|+|+-.+|++..+|+...+|++|++...-.+++.|++.+......-.++|..+-.|  +.++++++|.++|+..+|.+
T Consensus       309 GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE  386 (649)
T KOG1179|consen  309 GATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGE  386 (649)
T ss_pred             CceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCCeEEE
Confidence            9999999999999999999999999999999999999999988887888999988777  99999999999999777887


Q ss_pred             cC
Q 019348          341 KI  342 (342)
Q Consensus       341 ~Y  342 (342)
                      .|
T Consensus       387 ~Y  388 (649)
T KOG1179|consen  387 FY  388 (649)
T ss_pred             Ee
Confidence            76

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.1e-42  Score=326.24  Aligned_cols=312  Identities=18%  Similarity=0.248  Sum_probs=236.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeC----C-CC--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDA----D-SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~----~-~~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      .|+.++|.+.++++||++|+...    + .+  .++||+||.++++++|+.|++.|+++||+|+|+++|+++|+++++||
T Consensus        45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~  124 (666)
T PLN02614         45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC  124 (666)
T ss_pred             CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            59999999999999999999842    1 11  35899999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-C-----CC-eEEecCCCccccccccccccccccHH
Q 019348          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-N-----LP-AVLLGSKDKVSSSGLISRSSKIVSFH  172 (342)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (342)
                      +++|+++||+++.++.+++.+++++++++++|++++....+... .     .. .+.++...................++
T Consensus       125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~  204 (666)
T PLN02614        125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD  204 (666)
T ss_pred             HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence            99999999999999999999999999999999987654433211 1     11 22222110000000000011234566


Q ss_pred             HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh---ccccCCCeEEEEccchhHHHH
Q 019348          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ---ELVGELDHVVLCVLPMFHVFG  249 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g  249 (342)
                      ++...... .........++++++|+|||||||.||||++||+++...+.......   ...+..+|++++++|++|.++
T Consensus       205 ~~~~~~~~-~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~  283 (666)
T PLN02614        205 EFLKLGEG-KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFD  283 (666)
T ss_pred             HHHhhccc-CCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHH
Confidence            66543321 11112234678999999999999999999999999988754422111   123567899999999999999


Q ss_pred             HHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--------------------------
Q 019348          250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--------------------------  303 (342)
Q Consensus       250 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--------------------------  303 (342)
                      + ...+..+..|+++++.+ +++..+++.++++++|+++++|++++.+.+....                          
T Consensus       284 ~-~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  361 (666)
T PLN02614        284 R-VIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKK  361 (666)
T ss_pred             H-HHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHc
Confidence            8 45667788999999875 5899999999999999999999999988642100                          


Q ss_pred             -----Ccc-------------CC-CCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          304 -----RKF-------------DI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       304 -----~~~-------------~l-~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                           ...             .+ ++||.+++||+++++.+ ++|.+.+++++++++|
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~Y  418 (666)
T PLN02614        362 GQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGY  418 (666)
T ss_pred             CCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeC
Confidence                 000             11 68999999999999864 6777888768999988

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=7.1e-42  Score=325.75  Aligned_cols=310  Identities=18%  Similarity=0.204  Sum_probs=244.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEe---CCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALID---ADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~---~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      .++.++|.+.++++||++|+..   .+.    .+.+||+||.++++++|+.|++.|+++||+|+|+++|+++|+++++||
T Consensus        44 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  123 (651)
T PLN02736         44 GTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC  123 (651)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            6899999999999999999942   221    256999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCcccccc-ccccccccccHHH
Q 019348          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSG-LISRSSKIVSFHD  173 (342)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  173 (342)
                      +++|++++|+++..+.+++.+++++++++++|++.+....+....     .+.++........... ..........|++
T Consensus       124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  203 (651)
T PLN02736        124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSK  203 (651)
T ss_pred             HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHH
Confidence            999999999999999999999999999999999977665543321     1222222110000000 0001122456777


Q ss_pred             HHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHH
Q 019348          174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~  253 (342)
                      +...... .........++++++|+|||||||.||||++||+++...+..  ....+...++|++++.+|++|.+++ ..
T Consensus       204 ~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~--~~~~~~~~~~d~~l~~lPl~h~~~~-~~  279 (651)
T PLN02736        204 LLAQGRS-SPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG--SSLSTKFYPSDVHISYLPLAHIYER-VN  279 (651)
T ss_pred             HHHhccc-CCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH--HHhccCCCCCCEEEEeCCHHHHHHH-HH
Confidence            6654321 111223456789999999999999999999999999987555  3344556788999999999999999 57


Q ss_pred             HHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC----------------------------CC-
Q 019348          254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL----------------------------VR-  304 (342)
Q Consensus       254 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----------------------------~~-  304 (342)
                      ++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+.+...                            .. 
T Consensus       280 ~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (651)
T PLN02736        280 QIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNP  358 (651)
T ss_pred             HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            8889999999998865 78999999999999999999999988765310                            00 


Q ss_pred             c------------cCC-CCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          305 K------------FDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       305 ~------------~~l-~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .            ..+ +++|.+++||+++++++.+++++.++ ++++++|
T Consensus       359 ~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~Y  408 (651)
T PLN02736        359 SPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGY  408 (651)
T ss_pred             CchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEe
Confidence            0            011 48999999999999999999999987 8899988

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.2e-41  Score=323.85  Aligned_cols=311  Identities=18%  Similarity=0.230  Sum_probs=235.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeC---C----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDA---D----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~---~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      .|+.++|.+.++++|+++|+...   +    ..+++||+|+.++++++|.+|.+.|+++||+|+|+++|+++|+++++||
T Consensus        43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  122 (660)
T PLN02861         43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (660)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            58999999999999999999642   1    1257999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc------CCCeEEecCCCccc-cccccccccccccHH
Q 019348          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------NLPAVLLGSKDKVS-SSGLISRSSKIVSFH  172 (342)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  172 (342)
                      +++|++++|+++..+.+++.+++++++++++|++++....+...      ..+.++........ ............+|.
T Consensus       123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
T PLN02861        123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWE  202 (660)
T ss_pred             HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHH
Confidence            99999999999999999999999999999999987655443221      12222221110000 000000011234566


Q ss_pred             HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhc---cccCCCeEEEEccchhHHHH
Q 019348          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE---LVGELDHVVLCVLPMFHVFG  249 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g  249 (342)
                      ++.....  .........++++++|+|||||||.||||++||++++..+........   .....+|++++++|++|.++
T Consensus       203 ~~~~~~~--~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~  280 (660)
T PLN02861        203 EFSLMGS--LDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYD  280 (660)
T ss_pred             HHHHhCc--ccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHH
Confidence            6654332  111222346789999999999999999999999999987544221111   11357899999999999999


Q ss_pred             HHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcC-----------------------------
Q 019348          250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-----------------------------  300 (342)
Q Consensus       250 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~-----------------------------  300 (342)
                      +. ..+.++..|+++++.+ +++..+++.|+++++|+++++|.+++.+.+.                             
T Consensus       281 ~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~  358 (660)
T PLN02861        281 QV-IETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK  358 (660)
T ss_pred             HH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhc
Confidence            84 4556899999999874 6899999999999999999999999988641                             


Q ss_pred             --------CCCCcc-------CC-CCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          301 --------SLVRKF-------DI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       301 --------~~~~~~-------~l-~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                              +.....       .+ .++|.+++||+++++++. +|.+.++...++++|
T Consensus       359 ~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~Y  415 (660)
T PLN02861        359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGY  415 (660)
T ss_pred             CCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEec
Confidence                    000000       11 589999999999999974 577777745788888

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.3e-41  Score=314.57  Aligned_cols=298  Identities=19%  Similarity=0.240  Sum_probs=242.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.|.+.++++|++.|+.+.+ .+++||+||.++++++|+.|.+   .+||+|+++++|+++++++++||+++|+++
T Consensus        19 ~~~~~~~~~~~~~~p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v~   94 (539)
T PRK06334         19 KTVLESFLKLCSEMTTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKIP   94 (539)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCee
Confidence            689999999999999999998763 3789999999999999999987   389999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-------CCeEEecCCCccccccccccccccccHHHHHhcc-
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS-  178 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  178 (342)
                      +|+++..+.+++.++++.+++++++++.+....+.+..       ...+.++...            ....+.+..... 
T Consensus        95 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~  162 (539)
T PRK06334         95 VMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVR------------KELSFWEKCRIGI  162 (539)
T ss_pred             EecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhh------------hhccHHHhhhhhh
Confidence            99999999999999999999999999977665544321       1122221100            000001100000 


Q ss_pred             ---CCC----CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHH
Q 019348          179 ---GSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS  251 (342)
Q Consensus       179 ---~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~  251 (342)
                         ...    .........++++++|+|||||||.||||++||+++......  ....+....+|++++.+|++|.+|+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~g~~  240 (539)
T PRK06334        163 YMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRA--CLKFFSPKEDDVMMSFLPPFHAYGFN  240 (539)
T ss_pred             hhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHH--HHHhcCCCCCceEEEecchHhhhhhH
Confidence               000    000112346789999999999999999999999999887444  33445567889999999999999986


Q ss_pred             HHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHH
Q 019348          252 VILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ  330 (342)
Q Consensus       252 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~  330 (342)
                      ..++.++..|+++++.. .+++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++.++++
T Consensus       241 ~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~  320 (539)
T PRK06334        241 SCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEAL  320 (539)
T ss_pred             HHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHH
Confidence            67889999999999875 57999999999999999999999999999987655566789999999999999999999999


Q ss_pred             HhCCCCcccccC
Q 019348          331 KNIPGATIFQKI  342 (342)
Q Consensus       331 ~~~~~~~l~~~Y  342 (342)
                      +.++++.+++.|
T Consensus       321 ~~~~~~~i~~~Y  332 (539)
T PRK06334        321 KTFPHIQLRQGY  332 (539)
T ss_pred             HHCCCCeEEecc
Confidence            999878999888

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.4e-41  Score=314.02  Aligned_cols=308  Identities=27%  Similarity=0.403  Sum_probs=255.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .++.++|.+.++++|+++|+++.  ++++||+||.+++.++|..|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus        10 ~tl~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~   87 (546)
T PRK08314         10 TSLFHNLEVSARRYPDKTAIVFY--GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAV   87 (546)
T ss_pred             CCHHHHHHHHHHHcCCCcceeec--CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcE
Confidence            58999999999999999999987  77999999999999999999998 9999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCccccc----c-----------cccccc
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSS----G-----------LISRSS  166 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~-----------~~~~~~  166 (342)
                      ++|++|..+.+++.++++.+++++++++++....+...    ....+.+.........    .           ......
T Consensus        88 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (546)
T PRK08314         88 VVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPG  167 (546)
T ss_pred             EeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccccccccc
Confidence            99999999999999999999999999998776654432    1222222110000000    0           000112


Q ss_pred             ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~  246 (342)
                      ++..|++......   ........++++++|+|||||||.||+|.++|.+++.++..  .........+|++++..|++|
T Consensus       168 ~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~  242 (546)
T PRK08314        168 GVVAWKEALAAGL---APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVG--SVLWSNSTPESVVLAVLPLFH  242 (546)
T ss_pred             ccccHHHHhcccC---CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhhCCCCCceEEEEcCchH
Confidence            3445555554321   11223456789999999999999999999999999987554  344455678999999999999


Q ss_pred             HHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHH
Q 019348          247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM  326 (342)
Q Consensus       247 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~  326 (342)
                      .+|+...++.++..|+++++.+.+++..+++.++++++|++.++|.++..++........+++++|.+++||+++++++.
T Consensus       243 ~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~  322 (546)
T PRK08314        243 VTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVA  322 (546)
T ss_pred             HHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHH
Confidence            99997888999999999999999999999999999999999999999999988766566678899999999999999999


Q ss_pred             HHHHHhCCCCcccccC
Q 019348          327 EDCQKNIPGATIFQKI  342 (342)
Q Consensus       327 ~~~~~~~~~~~l~~~Y  342 (342)
                      +++.+.|+ +++++.|
T Consensus       323 ~~~~~~~~-~~~~~~Y  337 (546)
T PRK08314        323 ERLKELTG-LDYVEGY  337 (546)
T ss_pred             HHHHHHcC-CcEEecc
Confidence            99999997 8999887

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=5e-41  Score=319.93  Aligned_cols=313  Identities=22%  Similarity=0.330  Sum_probs=238.0

Q ss_pred             CCH-HHHHhhhcc-cCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHH
Q 019348           27 FSM-VHFLFRNSA-SYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI  100 (342)
Q Consensus        27 ~~l-~~~l~~~~~-~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~  100 (342)
                      .|+ ..++.++++ .+|+++|+++..    ..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+
T Consensus        87 ~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~  166 (666)
T PLN02654         87 TNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACA  166 (666)
T ss_pred             eeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            455 456666665 489999998632    23789999999999999999999999999999999999999999999999


Q ss_pred             HhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc------------------CCCeEEe-cCCCccccccc
Q 019348          101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------------------NLPAVLL-GSKDKVSSSGL  161 (342)
Q Consensus       101 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~~~  161 (342)
                      ++|++++|+++.++.+++.+++++++|+++|+++......+..                  ....+.. ...........
T Consensus       167 ~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (666)
T PLN02654        167 RIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDT  246 (666)
T ss_pred             HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccc
Confidence            9999999999999999999999999999999987643221110                  0001111 10000000000


Q ss_pred             cccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEc
Q 019348          162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV  241 (342)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~  241 (342)
                      .........|+++.....  ..........+++++|+|||||||.||||+++|++++.... ......+.+.++|++++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~-~~~~~~~~~~~~d~~~~~  323 (666)
T PLN02654        247 KWQEGRDVWWQDVVPNYP--TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTA-TTFKYAFDYKPTDVYWCT  323 (666)
T ss_pred             ccccCCcccHHHHhhcCC--CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHH-HHHHHhcCCCCCcEEEEc
Confidence            000001122444443211  11122235678999999999999999999999999764321 113344566788999999


Q ss_pred             cchhHHHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEE
Q 019348          242 LPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVG  315 (342)
Q Consensus       242 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~  315 (342)
                      .|++|+.|....++.+|..|+++++.++    .++..+++.++++++|+++++|++++.|.+...  ....++++||.++
T Consensus       324 ~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~  403 (666)
T PLN02654        324 ADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLG  403 (666)
T ss_pred             CCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEE
Confidence            9999999986778999999999999863    479999999999999999999999999988653  2345789999999


Q ss_pred             eecccCCHHHHHHHHHhCCC--CcccccC
Q 019348          316 SGAAPLGKELMEDCQKNIPG--ATIFQKI  342 (342)
Q Consensus       316 ~gG~~l~~~~~~~~~~~~~~--~~l~~~Y  342 (342)
                      ++|+++++++.+++.+.+|+  +++.+.|
T Consensus       404 ~~Ge~l~~~~~~~~~~~~g~~~~~i~~~y  432 (666)
T PLN02654        404 SVGEPINPSAWRWFFNVVGDSRCPISDTW  432 (666)
T ss_pred             EecCCCCHHHHHHHHHHhCCCCCceeccc
Confidence            99999999999999999974  5677766

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.1e-40  Score=316.27  Aligned_cols=312  Identities=25%  Similarity=0.312  Sum_probs=246.0

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeC------CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDA------DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~------~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      +.|+.++|.+.++++|+++|+++.      +..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~  103 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG  103 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            468999999999999999999863      13579999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch-----hhhhc----c-CCC-eEEecCCCccccccc-------
Q 019348          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKD----L-NLP-AVLLGSKDKVSSSGL-------  161 (342)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~----~-~~~-~~~~~~~~~~~~~~~-------  161 (342)
                      +++| +++|+++.++.+++.++++.++++++++++...     .....    . ..+ .+.++..........       
T Consensus       104 ~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  182 (632)
T PRK07529        104 EAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIR  182 (632)
T ss_pred             HHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccc
Confidence            9999 568999999999999999999999999986532     12111    1 111 222221110000000       


Q ss_pred             cccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEc
Q 019348          162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV  241 (342)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~  241 (342)
                      ......+..|.+.+...............++++++++|||||||.||+|.+||+++...+..  ....+...++|++++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~  260 (632)
T PRK07529        183 RKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWL--GALLLGLGPGDTVFCG  260 (632)
T ss_pred             cccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHH--HHHhcCCCCCCEEEEe
Confidence            00122344566655443311111223346789999999999999999999999999887543  3344555788999999


Q ss_pred             cchhHHHHHHHHHHHHhhcCCeEEEccCC---C---HHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEE
Q 019348          242 LPMFHVFGLSVILYDQLQKGNCVVSMGKF---D---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG  315 (342)
Q Consensus       242 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~---~---~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~  315 (342)
                      .|++|.++....++.++..|++++++++.   +   ...+++.++++++|++.++|+++..|++.+. ...++++||.++
T Consensus       261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~  339 (632)
T PRK07529        261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYAL  339 (632)
T ss_pred             cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEE
Confidence            99999999877899999999999998642   2   3688999999999999999999999998763 335789999999


Q ss_pred             eecccCCHHHHHHHHHhCCCCcccccC
Q 019348          316 SGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       316 ~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +||+++++++.++|++.++ +++++.|
T Consensus       340 ~gg~~l~~~l~~~~~~~~g-~~l~~~Y  365 (632)
T PRK07529        340 CGAAPLPVEVFRRFEAATG-VRIVEGY  365 (632)
T ss_pred             EcCCCCCHHHHHHHHHHhC-CcEeeee
Confidence            9999999999999999997 9999988

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-40  Score=309.56  Aligned_cols=304  Identities=26%  Similarity=0.383  Sum_probs=255.9

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.|.+.++.+|+++|+++.  ++++||+||.+.+.++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus         5 ~~i~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~   82 (513)
T PRK07656          5 MTLPELLARAARRFGDKEAYVFG--DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV   82 (513)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            68999999999999999999997  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----CCCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      +|+++..+.+++.++++.++++++++++.........     ....+++.......     ........|.++.....  
T Consensus        83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--  155 (513)
T PRK07656         83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDD-----PHTEKMKTFTDFLAAGD--  155 (513)
T ss_pred             EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccc-----cCccccccHHHHHhcCC--
Confidence            9999999999999999999999999988765544322     11222222211100     00112245666654433  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G  261 (342)
                      ..........+++++|+|||||||.||+|.++|.++...+..  ....+....+|++++..|++|.+++...++.++..|
T Consensus       156 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G  233 (513)
T PRK07656        156 PAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAAD--WAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRG  233 (513)
T ss_pred             CCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHH--HHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcC
Confidence            212233456789999999999999999999999999877544  344555678899999999999999877799999999


Q ss_pred             CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCC-cccc
Q 019348          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA-TIFQ  340 (342)
Q Consensus       262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~-~l~~  340 (342)
                      +++++.+.+++..+++.++++++|++.++|.+++.+.+.......+++++|.+++||+++++++.++|++.++ . .+++
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~  312 (513)
T PRK07656        234 ATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELG-VDIVLT  312 (513)
T ss_pred             ceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcC-CCceEe
Confidence            9999998899999999999999999999999999999988776678899999999999999999999999998 6 8888


Q ss_pred             cC
Q 019348          341 KI  342 (342)
Q Consensus       341 ~Y  342 (342)
                      .|
T Consensus       313 ~Y  314 (513)
T PRK07656        313 GY  314 (513)
T ss_pred             EE
Confidence            77

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=2.5e-40  Score=313.28  Aligned_cols=305  Identities=20%  Similarity=0.242  Sum_probs=236.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC---CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G  103 (342)
                      .++.+.|.+.++++|+++|+++.+   ..+++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|
T Consensus        39 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G  118 (614)
T PRK08180         39 RRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAG  118 (614)
T ss_pred             ccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcC
Confidence            689999999999999999998752   13689999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCCCC-----HHHHHHHhhhcCceEEEEcccc--hhhhhcc---CCCeEEecCCCccccccccccccccccHHH
Q 019348          104 AIASTANPVYT-----VSELSKQVKDSNPKLVITVPEL--WDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKIVSFHD  173 (342)
Q Consensus       104 ~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (342)
                      ++++|++|.++     .+++.++++.++++++|+++..  ...+...   ....+.....         ........+.+
T Consensus       119 av~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~  189 (614)
T PRK08180        119 VPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGA---------VPGRAATPFAA  189 (614)
T ss_pred             CeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCC---------CCCcccccHHH
Confidence            99999999988     7899999999999999997542  2222211   1112222111         00111234555


Q ss_pred             HHhccCCCC-CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc--CCCeEEEEccchhHHHHH
Q 019348          174 LIELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG--ELDHVVLCVLPMFHVFGL  250 (342)
Q Consensus       174 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~  250 (342)
                      +........ ........++++++|+|||||||.||||++||+++...+...  ...+..  ..++++++.+|++|.+|+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~~~~l~~lPl~h~~g~  267 (614)
T PRK08180        190 LLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQML--AQTFPFLAEEPPVLVDWLPWNHTFGG  267 (614)
T ss_pred             HhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHH--HhhccccCCCCcEEEEecchHHHhhH
Confidence            553321000 011123457899999999999999999999999998875442  222332  256899999999999998


Q ss_pred             HHHHHHHhhcCCeEEEccC-CCH---HHHHHHHHhccceEEEecHHHHHHHHcCCC----CCccCCCCceEEEeecccCC
Q 019348          251 SVILYDQLQKGNCVVSMGK-FDI---EMALRAIEKYRVTVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGAAPLG  322 (342)
Q Consensus       251 ~~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----~~~~~l~~lr~~~~gG~~l~  322 (342)
                      ...++.++..|+++++.+. +++   ..+++.++++++|+++++|.+++.|++...    ....++++||.+++||++++
T Consensus       268 ~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~  347 (614)
T PRK08180        268 NHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALS  347 (614)
T ss_pred             HHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCC
Confidence            6778899999999999763 444   467888999999999999999999887432    22345789999999999999


Q ss_pred             HHHHHHHHHh----CC-CCcccccC
Q 019348          323 KELMEDCQKN----IP-GATIFQKI  342 (342)
Q Consensus       323 ~~~~~~~~~~----~~-~~~l~~~Y  342 (342)
                      +++.+++++.    ++ ++++++.|
T Consensus       348 ~~~~~~~~~~~~~~~g~~~~l~~~Y  372 (614)
T PRK08180        348 QDVWDRLDRVAEATCGERIRMMTGL  372 (614)
T ss_pred             HHHHHHHHHHHHhhcCCCceeeeee
Confidence            9999999875    33 36778877

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.4e-40  Score=314.16  Aligned_cols=309  Identities=22%  Similarity=0.286  Sum_probs=240.4

Q ss_pred             CCH-HHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348           27 FSM-VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (342)
Q Consensus        27 ~~l-~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~  101 (342)
                      .|+ .+.+.+++..+|+++|+++.+    ..+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||++
T Consensus        51 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~  130 (628)
T TIGR02316        51 TNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACAR  130 (628)
T ss_pred             eeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            344 567778888899999998732    247899999999999999999999999999999999999999999999999


Q ss_pred             hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch---------hhh----hcc---CCCeEEecCCCccccccccccc
Q 019348          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKV----KDL---NLPAVLLGSKDKVSSSGLISRS  165 (342)
Q Consensus       102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~  165 (342)
                      +|++++|+++.++.+++.+++++++|+++|+++...         ..+    ...   ....+.++.....  ..  ...
T Consensus       131 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~--~~--~~~  206 (628)
T TIGR02316       131 IGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAP--MR--LIP  206 (628)
T ss_pred             hCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC--cC--ccc
Confidence            999999999999999999999999999999976432         111    111   1123333321100  00  000


Q ss_pred             cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchh
Q 019348          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~  245 (342)
                      .....|.++...... .........++++++|+|||||||.||||+++|.+++.... ......+...++|++++..|++
T Consensus       207 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~  284 (628)
T TIGR02316       207 GRDVDYAALRTQHED-AQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALA-LSMWAIFGIRAGQVMFSASDVG  284 (628)
T ss_pred             CccccHHHHhhcccc-CCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHH-HHHHHhcCCCCCcEEEEcCCCC
Confidence            112345555443210 11122234678999999999999999999999999754321 1133445567889999999999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecc
Q 019348          246 HVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAA  319 (342)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~  319 (342)
                      |+.++...++.+|..|+++++.+.    .++..+++.++++++|+++++|++++.|.+...  ....++++||.+++||+
T Consensus       285 ~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe  364 (628)
T TIGR02316       285 WVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGE  364 (628)
T ss_pred             eeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecC
Confidence            999876778999999999999863    478999999999999999999999999987653  23567899999999999


Q ss_pred             cCCHHHHHHHHHhCCCCcccccC
Q 019348          320 PLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++++++.+++++.++ ..+++.|
T Consensus       365 ~l~~~~~~~~~~~~~-~~~~~~y  386 (628)
T TIGR02316       365 PLDEPTAHWITDGLG-KPVIDNY  386 (628)
T ss_pred             CCCHHHHHHHHHHhC-CCEEecc
Confidence            999999999999887 7888877

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-40  Score=313.79  Aligned_cols=304  Identities=21%  Similarity=0.283  Sum_probs=247.0

Q ss_pred             CCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348           24 DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (342)
Q Consensus        24 ~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G  103 (342)
                      ..+.|+.+.|.+.++++||++|+++.  ++.+||+||.++++++|..|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus        34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G  111 (600)
T PRK08279         34 DSKRSLGDVFEEAAARHPDRPALLFE--DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLG  111 (600)
T ss_pred             CCcccHHHHHHHHHHhCCCCcEEEeC--CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            34479999999999999999999987  7899999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhcc
Q 019348          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (342)
Q Consensus       104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (342)
                      ++++++++..+.+++.++++.+++++++++++..+.+.+..     ...+.......         ......+.++....
T Consensus       112 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~  182 (600)
T PRK08279        112 AVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDT---------LDDPEGYEDLAAAA  182 (600)
T ss_pred             cEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcc---------ccccccHHHHhhhc
Confidence            99999999999999999999999999999987766554332     11222221100         00011233333211


Q ss_pred             CCCC---CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHH
Q 019348          179 GSVT---DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY  255 (342)
Q Consensus       179 ~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~  255 (342)
                      ....   .........+++++|+|||||||.||||++||.++.+.+..  ....+...++|++++..|++|.+++...++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~  260 (600)
T PRK08279        183 AGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGG--FGGLLRLTPDDVLYCCLPLYHNTGGTVAWS  260 (600)
T ss_pred             ccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHH--HHHhcCCCCCcEEEEecCchhhhhHHHHHH
Confidence            1001   11123345689999999999999999999999999998665  334466778999999999999999966778


Q ss_pred             HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      .++..|+++++.+.+++..+++.++++++|++.++|++++.++...........++|.+  +|+.+++++.++|.+.||.
T Consensus       261 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~  338 (600)
T PRK08279        261 SVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGI  338 (600)
T ss_pred             HHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCc
Confidence            88999999999999999999999999999999999999999988765544456677764  4778999999999999985


Q ss_pred             CcccccC
Q 019348          336 ATIFQKI  342 (342)
Q Consensus       336 ~~l~~~Y  342 (342)
                      ..+++.|
T Consensus       339 ~~l~~~Y  345 (600)
T PRK08279        339 PRILEFY  345 (600)
T ss_pred             ceeeeee
Confidence            5688877

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=7.2e-40  Score=306.73  Aligned_cols=300  Identities=24%  Similarity=0.302  Sum_probs=247.9

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~  102 (342)
                      .++.+.|.+.++.+||++|+++.+.    .+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~  103 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRI  103 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence            5899999999999999999997631    279999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch-----hhhhcc-----CCC-eEEecCCCccccccccccccccccH
Q 019348          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDL-----NLP-AVLLGSKDKVSSSGLISRSSKIVSF  171 (342)
Q Consensus       103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  171 (342)
                      |++++|++|..+.+++.++++.+++++++++++..     ....++     ... .+.++..             ....+
T Consensus       104 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  170 (547)
T PRK13295        104 GAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD-------------GADSF  170 (547)
T ss_pred             CcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC-------------CccCH
Confidence            99999999999999999999999999999987642     111111     111 1222111             11233


Q ss_pred             HHHHhccC-----CC-CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchh
Q 019348          172 HDLIELSG-----SV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (342)
Q Consensus       172 ~~~~~~~~-----~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~  245 (342)
                      .++.....     .. .........++++++|+|||||||.||+|+++|+++...+..  ....+.+..+|++++..|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~p~~  248 (547)
T PRK13295        171 EALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVP--YAERLGLGADDVILMASPMA  248 (547)
T ss_pred             HHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHH--HHHHhCCCCCCeEEEecCch
Confidence            33332110     00 011112345689999999999999999999999999887554  34445567889999999999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHH
Q 019348          246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL  325 (342)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~  325 (342)
                      |.++++..++.++..|+++++.+.+++..+++.++++++|++.++|.++..+.........++++||.+++||+++++.+
T Consensus       249 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~  328 (547)
T PRK13295        249 HQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGAL  328 (547)
T ss_pred             hhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHH
Confidence            99998778999999999999999899999999999999999999999999999877666678899999999999999999


Q ss_pred             HHHHHHhCCCCcccccC
Q 019348          326 MEDCQKNIPGATIFQKI  342 (342)
Q Consensus       326 ~~~~~~~~~~~~l~~~Y  342 (342)
                      .+++++.++ +++++.|
T Consensus       329 ~~~~~~~~~-~~~~~~Y  344 (547)
T PRK13295        329 VERARAALG-AKIVSAW  344 (547)
T ss_pred             HHHHHHHhC-CCeEEec
Confidence            999999996 8999988

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=4.2e-40  Score=314.75  Aligned_cols=310  Identities=19%  Similarity=0.235  Sum_probs=238.4

Q ss_pred             CCHHHH-HhhhcccCCCceEEEeCCCC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHF-LFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~-l~~~~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      .|+.+. +.+.+.++|+++|+++.+.+      +++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||
T Consensus       174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~  253 (728)
T PLN03052        174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI  253 (728)
T ss_pred             eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            466554 44444678999999976432      48999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hhhcc-CCCeEEecCCCccccccccccccccc
Q 019348          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDL-NLPAVLLGSKDKVSSSGLISRSSKIV  169 (342)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (342)
                      +++|++++|++|.++.+++.+++++++++++|+++....         .+.+. ....+.+........   ........
T Consensus       254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~---~~~~~~~~  330 (728)
T PLN03052        254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVR---VKLREGDM  330 (728)
T ss_pred             HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccc---cccccCCc
Confidence            999999999999999999999999999999999865421         11111 112222221110000   00011234


Q ss_pred             cHHHHHhccCCC---CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348          170 SFHDLIELSGSV---TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (342)
Q Consensus       170 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~  246 (342)
                      .|++++......   ..........+++++|+|||||||.||||+++|.+++..+...  .....+.++|++++..|++|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~--~~~~~l~~~d~~~~~~~l~w  408 (728)
T PLN03052        331 SWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADA--WAHLDIRKGDIVCWPTNLGW  408 (728)
T ss_pred             cHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHH--HHhcCCCCCcEEEECCCcHH
Confidence            566665432100   1111122345899999999999999999999999987654332  22345678899999999999


Q ss_pred             HHHHHHHHHHHhhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHH
Q 019348          247 VFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL  325 (342)
Q Consensus       247 ~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~  325 (342)
                      +++. ..++.+|..|+++++.+. .++..+++.++++++|++.++|++++.|.+.......++++||.+++||++++++.
T Consensus       409 ~~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~  487 (728)
T PLN03052        409 MMGP-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDD  487 (728)
T ss_pred             HhHH-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHH
Confidence            9998 678899999999999864 46678999999999999999999999998876556678999999999999999999


Q ss_pred             HHHHHHhCCCCcccccC
Q 019348          326 MEDCQKNIPGATIFQKI  342 (342)
Q Consensus       326 ~~~~~~~~~~~~l~~~Y  342 (342)
                      ..++.+.++..++.+.|
T Consensus       488 ~~~~~~~~~~~~i~~~y  504 (728)
T PLN03052        488 YLWLMSRAGYKPIIEYC  504 (728)
T ss_pred             HHHHHHhcCCCCeEeec
Confidence            88888877645677766

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-40  Score=306.18  Aligned_cols=305  Identities=26%  Similarity=0.368  Sum_probs=255.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+++.+.++++|+++|+.+.  ++.+||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus        11 ~~l~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~   88 (523)
T PRK08316         11 QTIGDILRRSARRYPDKTALVFG--DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH   88 (523)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (342)
                      +|+++..+.+++.++++.+++++++++.+....+....    ...+......     ........+..+.++.....  .
T Consensus        89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~  161 (523)
T PRK08316         89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVL-----GGREAPGGWLDFADWAEAGS--V  161 (523)
T ss_pred             EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecc-----cccccccchhhHHHHHhcCC--C
Confidence            99999999999999999999999999988766554321    1111111000     00011223444555544332  2


Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCC
Q 019348          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (342)
Q Consensus       183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (342)
                      .........+++++++|||||||.||+|.+||++++.....  .........+|++++..|++|.+++...++.++..|+
T Consensus       162 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~  239 (523)
T PRK08316        162 AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVS--CIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA  239 (523)
T ss_pred             ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence            22233456789999999999999999999999999887544  3444456788999999999999998666778899999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       263 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++++.+..++..+++.++++++|++.++|.++..++++......+++++|.+++||++++.++.+.+++.+++.++++.|
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~Y  319 (523)
T PRK08316        240 TNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCY  319 (523)
T ss_pred             eEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeee
Confidence            99999888999999999999999999999999999998876777889999999999999999999999999778999887

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-39  Score=306.78  Aligned_cols=312  Identities=26%  Similarity=0.350  Sum_probs=250.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+++.+.++++|+++|+.+.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  109 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDFF--GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV  109 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            58999999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCe-EEecCCCccccc-----------------ccccc
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPA-VLLGSKDKVSSS-----------------GLISR  164 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~-----------------~~~~~  164 (342)
                      +|++|..+.+++.+++++++++++|++++......++    .... +.++........                 .....
T Consensus       110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (573)
T PRK05605        110 VEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGP  189 (573)
T ss_pred             eecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccccccC
Confidence            9999999999999999999999999987765544332    1111 111110000000                 00011


Q ss_pred             ccccccHHHHHhccCCCC--CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccc-cCCCeEEEEc
Q 019348          165 SSKIVSFHDLIELSGSVT--DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVLCV  241 (342)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~d~~~~~  241 (342)
                      ..+...|+++........  .........+++++++|||||||.||+|.+||+++...+..... .... ...++++++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~  268 (573)
T PRK05605        190 APGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKA-WVPGLGDGPERVLAA  268 (573)
T ss_pred             CCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHh-hccccCCCCcEEEEe
Confidence            223345666554322100  01122355789999999999999999999999999877543211 1111 2357899999


Q ss_pred             cchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccC
Q 019348          242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL  321 (342)
Q Consensus       242 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l  321 (342)
                      .|++|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|.+++.|.+.......+++++|.+++||+++
T Consensus       269 ~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l  348 (573)
T PRK05605        269 LPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMAL  348 (573)
T ss_pred             cChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcC
Confidence            99999999877788899999999999889999999999999999999999999999988776677889999999999999


Q ss_pred             CHHHHHHHHHhCCCCcccccC
Q 019348          322 GKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       322 ~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++++.++|++.++ .++++.|
T Consensus       349 ~~~~~~~~~~~~~-~~i~~~Y  368 (573)
T PRK05605        349 PVSTVELWEKLTG-GLLVEGY  368 (573)
T ss_pred             CHHHHHHHHHHhC-CCeeccc
Confidence            9999999999886 8888887

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-39  Score=303.83  Aligned_cols=304  Identities=27%  Similarity=0.378  Sum_probs=256.9

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      +.++.++|.+.++.+|+++|+.+.  ++.+||+||++++.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++
T Consensus         5 ~~~l~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~   82 (521)
T PRK06187          5 PLTIGRILRHGARKHPDKEAVYFD--GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV   82 (521)
T ss_pred             cCCHHHHHHHHHHHCCCceEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            379999999999999999999988  667999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      ++++++..+.+++..+++.+++++++++.+....+....     .+.+.........     ........+.+++.... 
T Consensus        83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-  156 (521)
T PRK06187         83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA-----PLAPEVGEYEELLAAAS-  156 (521)
T ss_pred             EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc-----ccccccccHHHHhhcCC-
Confidence            999999999999999999999999999988766554432     1122222221100     11234455666655433 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  260 (342)
                       ..........++++++.|||||||.||+|.+||+++......  ....+....+|++++..|++|.+++ ...+.++..
T Consensus       157 -~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~  232 (521)
T PRK06187        157 -DTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLA--VCAWLKLSRDDVYLVIVPMFHVHAW-GLPYLALMA  232 (521)
T ss_pred             -ccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHH--HHHhhCCCCCCEEEEeCCchHHhhH-HHHHHHHHh
Confidence             223334556788999999999999999999999999887554  3445567789999999999999998 555559999


Q ss_pred             CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (342)
Q Consensus       261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~  340 (342)
                      |+++++++.+++..+++.++++++|.++++|++++.|.+.......+++++|.+++||+++++++.+.|++.++ +++++
T Consensus       233 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~-~~v~~  311 (521)
T PRK06187        233 GAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFG-IDLVQ  311 (521)
T ss_pred             CCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhC-cchhe
Confidence            99999998889999999999999999999999999999988776778999999999999999999999999995 89988


Q ss_pred             cC
Q 019348          341 KI  342 (342)
Q Consensus       341 ~Y  342 (342)
                      .|
T Consensus       312 ~Y  313 (521)
T PRK06187        312 GY  313 (521)
T ss_pred             ee
Confidence            87

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=8.6e-40  Score=310.68  Aligned_cols=307  Identities=24%  Similarity=0.320  Sum_probs=239.9

Q ss_pred             HHHHHhhhcccCCCceEEEeCCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348           29 MVHFLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (342)
Q Consensus        29 l~~~l~~~~~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~  104 (342)
                      ..+.+.++++.+|+++|+++.+.    .+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|+
T Consensus        59 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga  138 (625)
T TIGR02188        59 SYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA  138 (625)
T ss_pred             HHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence            45566677888999999986532    36899999999999999999999999999999999999999999999999999


Q ss_pred             eEeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hh----hcc--CCC-eEEecCCCcccccccccccccc
Q 019348          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KV----KDL--NLP-AVLLGSKDKVSSSGLISRSSKI  168 (342)
Q Consensus       105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~  168 (342)
                      +++|+++.++.+++.++++.++++++|+++....         .+    ...  ... .+.+......  ..  ......
T Consensus       139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~  214 (625)
T TIGR02188       139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNP--VP--WVEGRD  214 (625)
T ss_pred             EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCC--cC--cccccc
Confidence            9999999999999999999999999999865321         11    111  111 2222211100  00  000112


Q ss_pred             ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF  248 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  248 (342)
                      ..+.++.....  .........++++++|+|||||||.||||+++|.+++..... .....+....+|++++..|++|+.
T Consensus       215 ~~~~~~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~  291 (625)
T TIGR02188       215 VWWHDLMAKAS--AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAM-TMKYVFDIKDGDIFWCTADVGWIT  291 (625)
T ss_pred             ccHHHHHhhcC--CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHH-HHHhccCCCCCcEEEECCCchhhh
Confidence            34555554332  222233456789999999999999999999999998654221 123344567889999999999999


Q ss_pred             HHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCC
Q 019348          249 GLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLG  322 (342)
Q Consensus       249 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~  322 (342)
                      +....++.+|..|+++++.+.    .++..+++.++++++|++.++|++++.|.+....  ...++++||.+++||++++
T Consensus       292 g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~  371 (625)
T TIGR02188       292 GHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPIN  371 (625)
T ss_pred             ccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCC
Confidence            886678999999999999753    4799999999999999999999999999886532  3456899999999999999


Q ss_pred             HHHHHHHHHhCC--CCcccccC
Q 019348          323 KELMEDCQKNIP--GATIFQKI  342 (342)
Q Consensus       323 ~~~~~~~~~~~~--~~~l~~~Y  342 (342)
                      +++.+++.+.++  ++++++.|
T Consensus       372 ~~~~~~~~~~~~~~~~~i~~~y  393 (625)
T TIGR02188       372 PEAWMWYYKVVGKERCPIVDTW  393 (625)
T ss_pred             HHHHHHHHHHcCCCCCceEecc
Confidence            999999999986  37788877

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-39  Score=301.30  Aligned_cols=299  Identities=25%  Similarity=0.337  Sum_probs=247.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .|+.+.+.+.++.+|+++|+.+.  ++.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        17 ~n~~~~~~~~a~~~~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   94 (542)
T PRK07786         17 QNWVNQLARHALMQPDAPALRFL--GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA   94 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            78999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      +|+++..+.+++..+++.+++++++++...........     ...+....+         ........+.+++....  
T Consensus        95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--  163 (542)
T PRK07786         95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGG---------SSDDSVLGYEDLLAEAG--  163 (542)
T ss_pred             EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecC---------CCcccccCHHHHhhccC--
Confidence            99999999999999999999999999987665543321     111221111         11122345555554332  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc-CCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~  260 (342)
                      ..........+++++++|||||||.||+|.++|+++...+..  ....+.. ..++++++..|++|.+|+ ..++.++..
T Consensus       164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~  240 (542)
T PRK07786        164 PAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMT--CLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGLLL  240 (542)
T ss_pred             CCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHH--HHHhcCCCCCCceEEEecchHHHHHH-HHHHHHHHc
Confidence            222223345678999999999999999999999999887554  2333333 467899999999999998 788999999


Q ss_pred             CCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcc
Q 019348          261 GNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (342)
Q Consensus       261 G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l  338 (342)
                      |+++++.+  .+++..+++.++++++|.++++|.+++.+.......... .++|.+++||+++++++.+.+++.|++.++
T Consensus       241 G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l  319 (542)
T PRK07786        241 GAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQI  319 (542)
T ss_pred             cCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeE
Confidence            99999865  579999999999999999999999999998876544333 369999999999999999999999987899


Q ss_pred             cccC
Q 019348          339 FQKI  342 (342)
Q Consensus       339 ~~~Y  342 (342)
                      ++.|
T Consensus       320 ~~~Y  323 (542)
T PRK07786        320 LAAF  323 (542)
T ss_pred             Eeee
Confidence            9887

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=5.3e-41  Score=304.42  Aligned_cols=292  Identities=33%  Similarity=0.500  Sum_probs=227.8

Q ss_pred             HhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC
Q 019348           33 LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV  112 (342)
Q Consensus        33 l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~  112 (342)
                      |+++++++||++|+++ +.++++||+||+++++++|..|++.|+++||+|+++++|+.+++++++||+++|++++|++|.
T Consensus         1 f~~~a~~~pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~   79 (417)
T PF00501_consen    1 FERQAQRYPDRIALID-DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS   79 (417)
T ss_dssp             HHHHHHHSTTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred             ChhHHhhCCCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence            6788999999999999 448999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHhhhcCceEEEE----cccchhhhhcc----CCC--eEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348          113 YTVSELSKQVKDSNPKLVIT----VPELWDKVKDL----NLP--AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (342)
Q Consensus       113 ~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (342)
                      .+.+++.++++.++++++|+    +......+...    ...  .+.++....             ...+.+...... .
T Consensus        80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~  145 (417)
T PF00501_consen   80 LSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDL-------------PKKEALKSASLS-D  145 (417)
T ss_dssp             SSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSC-------------TTCHHHHHHHHC-H
T ss_pred             cccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccc-------------cccccccccccc-c
Confidence            99999999999999999997    22221111111    111  233332210             000111100000 0


Q ss_pred             CCCCCC-CCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348          183 DIPDVS-VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (342)
Q Consensus       183 ~~~~~~-~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G  261 (342)
                      ... .. ..++++++++|||||||.||+|.++|+++++.+..+........+  |++++..|++|.+|++..++.++..|
T Consensus       146 ~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G  222 (417)
T PF00501_consen  146 EPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSG  222 (417)
T ss_dssp             CSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCT
T ss_pred             ccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccc
Confidence            000 00 156899999999999999999999999999987664422222222  59999999999999988899999999


Q ss_pred             CeEEEccCCC---HHHHHHHHHhccceEEEecHHHHHHHHcCCCCC----ccCCCCceEEEeecccCCHHHHHHHHHhCC
Q 019348          262 NCVVSMGKFD---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR----KFDISSLKLVGSGAAPLGKELMEDCQKNIP  334 (342)
Q Consensus       262 ~~~v~~~~~~---~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~  334 (342)
                      +++++++..+   +..+++.++++++|+++++|.+++.+++....+    ..++++||.+++||+++++++.+++++.++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~  302 (417)
T PF00501_consen  223 ATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFG  302 (417)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccc
Confidence            9999998754   477899999999999999999999999843222    357889999999999999999999999998


Q ss_pred             CCcccccC
Q 019348          335 GATIFQKI  342 (342)
Q Consensus       335 ~~~l~~~Y  342 (342)
                      ..++++.|
T Consensus       303 ~~~i~~~Y  310 (417)
T PF00501_consen  303 NAPIINLY  310 (417)
T ss_dssp             TSEEEEEE
T ss_pred             cccceecc
Confidence            44888877

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.5e-39  Score=305.90  Aligned_cols=306  Identities=23%  Similarity=0.310  Sum_probs=242.7

Q ss_pred             CCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348           25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (342)
Q Consensus        25 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~  104 (342)
                      .+.|+.+++.+.++.+||++|+++.  +.++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|+
T Consensus        12 ~~~~~~~~l~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~   89 (579)
T PLN03102         12 VPLTPITFLKRASECYPNRTSIIYG--KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGA   89 (579)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            4468899999999999999999987  77999999999999999999999999999999999999999999999999999


Q ss_pred             eEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----------CCCeEEecCCCccccccccccccccccHHH
Q 019348          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----------NLPAVLLGSKDKVSSSGLISRSSKIVSFHD  173 (342)
Q Consensus       105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (342)
                      +++|++|..+.+++.++++.++++++|++++....+.+.           ..+.+.++......     ........+.+
T Consensus        90 ~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  164 (579)
T PLN03102         90 VLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEELDYEC  164 (579)
T ss_pred             EEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcccccCHHH
Confidence            999999999999999999999999999988766544332           11233332111000     00112234555


Q ss_pred             HHhccCCCCCC---CCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHH
Q 019348          174 LIELSGSVTDI---PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL  250 (342)
Q Consensus       174 ~~~~~~~~~~~---~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~  250 (342)
                      +..........   ......++++++|+|||||||.||+|+++|.++......  ..........++++..+|++|..++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~g~  242 (579)
T PLN03102        165 LIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS--AIIGWEMGTCPVYLWTLPMFHCNGW  242 (579)
T ss_pred             HHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHH--HHhhcCCCCCCeEEecCChhhhcch
Confidence            54332210100   011235689999999999999999999999997654322  2223344567889999999999998


Q ss_pred             HHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHH
Q 019348          251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ  330 (342)
Q Consensus       251 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~  330 (342)
                       ...+.++..|+++++.+.+++..+++.++++++|++.++|++++.|.+.........++++.+++||+++++.+.+.++
T Consensus       243 -~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~  321 (579)
T PLN03102        243 -TFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQ  321 (579)
T ss_pred             -hHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHH
Confidence             6677888999999999888999999999999999999999999999987644444566788899999999999999987


Q ss_pred             HhCCCCcccccC
Q 019348          331 KNIPGATIFQKI  342 (342)
Q Consensus       331 ~~~~~~~l~~~Y  342 (342)
                      + ++ +++++.|
T Consensus       322 ~-~g-~~i~~~Y  331 (579)
T PLN03102        322 R-LG-FQVMHAY  331 (579)
T ss_pred             H-cC-CeEEeec
Confidence            6 54 8898887

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-39  Score=303.60  Aligned_cols=294  Identities=19%  Similarity=0.200  Sum_probs=243.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++++||++|+++.  ++.+||.||.++++++|++|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  120 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE--LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADI  120 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEE
Confidence            68999999999999999999986  7799999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccccccccccccccccHHHHHhccCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      +|+++.++.+++.++++.++++++|++.+....+....     .. .+.....            .....++.+..... 
T Consensus       121 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-  187 (537)
T PRK13382        121 LLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDE------------DHDLTVEVLIAAHA-  187 (537)
T ss_pred             EecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCC------------cccccHHHHhhccC-
Confidence            99999999999999999999999999977655443211     11 1111110            01123344333211 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  260 (342)
                       ..  .....+++.++++|||||||.||||+++|.++......  ....+....+++++...|++|.+|+ ..++.++..
T Consensus       188 -~~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~  261 (537)
T PRK13382        188 -GQ--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKA--ILDRTPWRAEEPTVIVAPMFHAWGF-SQLVLAASL  261 (537)
T ss_pred             -cC--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHH--HHHhhCCCCCCeEEEecChHhhhHH-HHHHHHHhc
Confidence             11  11234678899999999999999999999888776433  3334445678899999999999998 788999999


Q ss_pred             CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcc
Q 019348          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (342)
Q Consensus       261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l  338 (342)
                      |+++++.+.+++..+++.++++++|++.++|++++.|++....  ...+++++|.+++||+++++++.++|.+.+| .++
T Consensus       262 g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i  340 (537)
T PRK13382        262 ACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVI  340 (537)
T ss_pred             CcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-CcE
Confidence            9999999999999999999999999999999999999876532  2345678999999999999999999999998 789


Q ss_pred             cccC
Q 019348          339 FQKI  342 (342)
Q Consensus       339 ~~~Y  342 (342)
                      ++.|
T Consensus       341 ~~~Y  344 (537)
T PRK13382        341 YNNY  344 (537)
T ss_pred             Eecc
Confidence            9888

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.2e-40  Score=311.44  Aligned_cols=310  Identities=24%  Similarity=0.249  Sum_probs=232.6

Q ss_pred             HHHHHhhhccc--CCCceEEEeCCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348           29 MVHFLFRNSAS--YSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (342)
Q Consensus        29 l~~~l~~~~~~--~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~  102 (342)
                      ..+++.+++..  +|+++|+++...    .+++||+||.+++.++|..|++.|+++||+|+++++|++++++++|||+++
T Consensus        61 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~  140 (647)
T PTZ00237         61 CYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARI  140 (647)
T ss_pred             HHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            45566666644  799999986421    368999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccc---------hhhhhc---c---CC-CeEEecCCCcc--cc---ccc
Q 019348          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPEL---------WDKVKD---L---NL-PAVLLGSKDKV--SS---SGL  161 (342)
Q Consensus       103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~---~---~~-~~~~~~~~~~~--~~---~~~  161 (342)
                      |++++|+++.++.+++.+++++++++++|+++..         .+.+.+   .   .. ..+........  ..   ...
T Consensus       141 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  220 (647)
T PTZ00237        141 GATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIET  220 (647)
T ss_pred             CcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccc
Confidence            9999999999999999999999999999997521         111111   0   11 12222111000  00   000


Q ss_pred             cccccccccHHHHHhccCC---CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHH-HHHHhhhhhhhhccccCCCeE
Q 019348          162 ISRSSKIVSFHDLIELSGS---VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN-FIAASLMISAHQELVGELDHV  237 (342)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~-l~~~~~~~~~~~~~~~~~~d~  237 (342)
                      .........|++++.....   ..........++++++|+|||||||.||||+++|.+ +......  .........+|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~--~~~~~~~~~~d~  298 (647)
T PTZ00237        221 IPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYY--WRSIIEKDIPTV  298 (647)
T ss_pred             cCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHH--HHHhcCCCCCcE
Confidence            0111123456666542110   011122345678999999999999999999999998 4433211  223334556899


Q ss_pred             EEEccchhHHHHHHHHHHHHhhcCCeEEEccC--CC----HHHHHHHHHhccceEEEecHHHHHHHHcCCC-----CCcc
Q 019348          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--FD----IEMALRAIEKYRVTVWWVVPPIILALAKNSL-----VRKF  306 (342)
Q Consensus       238 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~~----~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-----~~~~  306 (342)
                      +++..|++|+.+. ..++.+|..|+++++.+.  +.    +..+++.++++++|+++++|++++.|.+...     ....
T Consensus       299 ~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~  377 (647)
T PTZ00237        299 VFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKY  377 (647)
T ss_pred             EEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccccccccc
Confidence            9999999998766 678999999999999754  22    6889999999999999999999999987532     2345


Q ss_pred             CCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       307 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++++||.+++||+++++++.+++++.++ +++++.|
T Consensus       378 ~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~~y  412 (647)
T PTZ00237        378 DLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSRGY  412 (647)
T ss_pred             CcchheEEEecCccCCHHHHHHHHHhcC-CCEEeee
Confidence            7899999999999999999999999997 8998887

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-39  Score=304.61  Aligned_cols=303  Identities=26%  Similarity=0.390  Sum_probs=245.8

Q ss_pred             CCHH-HHHhhhcc-cCCCceEEEeCC--CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348           27 FSMV-HFLFRNSA-SYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (342)
Q Consensus        27 ~~l~-~~l~~~~~-~~p~~~a~~~~~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~  102 (342)
                      .++. +.+.+.+. .+|+++|+.+.+  ..+++||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~  121 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN  121 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            4555 57777766 579999998753  3478999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---CC-eEEecCCCccccccccccccccccHHHHHhcc
Q 019348          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (342)
Q Consensus       103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (342)
                      |++++|+++..+.+++.++++.++++++++++..........   .. .+.++...        ........+.+++...
T Consensus       122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  193 (570)
T PRK04319        122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDV--------EEGPGTLDFNALMEQA  193 (570)
T ss_pred             CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCc--------CCCcCccCHHHHHhhc
Confidence            999999999999999999999999999999877654332111   11 22222110        0112334566655443


Q ss_pred             CCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHh
Q 019348          179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL  258 (342)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l  258 (342)
                      .  .........++++++|+|||||||.||+|+++|+++...+..  ....+.+..+|++++..|++|.+|....++.++
T Consensus       194 ~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l  269 (570)
T PRK04319        194 S--DEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQT--GKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPW  269 (570)
T ss_pred             C--CcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHH--HHHhcCCCCCceEEecCChHHhhCchHHHHHHH
Confidence            3  222233446789999999999999999999999999877443  344555678899999999999999877899999


Q ss_pred             hcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          259 QKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       259 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      ..|+++++.+ .+++..+++.++++++|+++++|.+++.|.+...  ....++++||.+++||+++++++.+++++.++ 
T Consensus       270 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-  348 (570)
T PRK04319        270 LNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG-  348 (570)
T ss_pred             hcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhC-
Confidence            9999999875 6899999999999999999999999999987643  23456889999999999999999999999987 


Q ss_pred             CcccccC
Q 019348          336 ATIFQKI  342 (342)
Q Consensus       336 ~~l~~~Y  342 (342)
                      .++++.|
T Consensus       349 ~~i~~~Y  355 (570)
T PRK04319        349 LPIHDNW  355 (570)
T ss_pred             CCeEece
Confidence            8898887

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.6e-39  Score=301.69  Aligned_cols=298  Identities=21%  Similarity=0.269  Sum_probs=245.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++.+|+++|+++.  ++++||+||.++++++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus        23 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        23 KPLTDILRDQAARYPDAIAIICG--NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhcc-----CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (342)
                      +++++..+.+++.++++.+++++++++.....     .....     ....+.+....           ...........
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  169 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQT-----------RVEAELFLWLE  169 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCC-----------CCcchhhHHhh
Confidence            99999999999999999999999999865321     11111     01112211110           00001111111


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH-HHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~  255 (342)
                      ...  .........++++++++|||||||.||+|++||.++..+...  .........+|++++.+|++|.+++.. .++
T Consensus       170 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~  245 (527)
T TIGR02275       170 SPA--EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRR--SVEICWLTQQTRYLCALPAAHNYPLSSPGAL  245 (527)
T ss_pred             CcC--ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHH--HHhhcCCCcCCEEEECCChHhhhhhhHHHHH
Confidence            111  111223456789999999999999999999999999887554  334455678899999999999999844 478


Q ss_pred             HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      .++..|+++++.+++++..+++.++++++|++.++|.+++.+++.......+++++|.+++||+++++++.+++.+.++ 
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-  324 (527)
T TIGR02275       246 GVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFG-  324 (527)
T ss_pred             HHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhC-
Confidence            8999999999998899999999999999999999999999999887666678899999999999999999999999987 


Q ss_pred             CcccccC
Q 019348          336 ATIFQKI  342 (342)
Q Consensus       336 ~~l~~~Y  342 (342)
                      +++++.|
T Consensus       325 ~~~~~~Y  331 (527)
T TIGR02275       325 CQLQQVF  331 (527)
T ss_pred             CeEEeee
Confidence            8998887

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-39  Score=300.14  Aligned_cols=286  Identities=19%  Similarity=0.224  Sum_probs=236.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      +++.+.|.+.++++||++|+.+.  ++++||.||.+++.++|+.|.+.|. +|++|+|+++|+.+++++++||+++|+++
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~   77 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN--DRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTC   77 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC--CcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence            46889999999999999999987  7899999999999999999999884 79999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|+++.++.+++.++++.+++++++++......+.......+.++                  .+.+......  .....
T Consensus        78 v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~  137 (487)
T PRK07638         78 VPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID------------------EWKRMIEKYL--PTYAP  137 (487)
T ss_pred             EecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEeh------------------hhhhhhhhcc--ccccc
Confidence            999999999999999999999999998765544432222222111                  1111111111  11111


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      .....+++++|+|||||||.||+|+++|.++...+..  ....+....+|+++...|++|..++ ..++.++..|+++++
T Consensus       138 ~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~  214 (487)
T PRK07638        138 IENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDC--NVHDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHL  214 (487)
T ss_pred             cccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEE
Confidence            2223467899999999999999999999999887554  3444556788999999999999887 788999999999999


Q ss_pred             ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+.+++..+++.++++++|++.++|++++.|.+...    ...+.+.++++|++++.+..+++++.+|++++++.|
T Consensus       215 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~Y  286 (487)
T PRK07638        215 MRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFY  286 (487)
T ss_pred             cCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEe
Confidence            999999999999999999999999999999988732    234566678899999999999999999889999887

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-39  Score=302.37  Aligned_cols=312  Identities=17%  Similarity=0.234  Sum_probs=245.1

Q ss_pred             CCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHH
Q 019348           15 LRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI   94 (342)
Q Consensus        15 ~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~   94 (342)
                      .-.+.+-+..  .++.+.|.+.++++|+++|+++.+..+.+||+||.++++++|+.|.+.|+++||+|+++++|+.++++
T Consensus         6 ~~~~~~~~~~--~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~   83 (534)
T PRK05852          6 GAAPMASDFG--PRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVV   83 (534)
T ss_pred             cccchhhhhc--ccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHH
Confidence            3344444555  79999999999999999999987556789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---CCe-EEecCCCccccccccccccccc-
Q 019348           95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPA-VLLGSKDKVSSSGLISRSSKIV-  169 (342)
Q Consensus        95 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~-  169 (342)
                      +++||+++|+++++++|.++.+++.++++.++++++|++...........   ... +.+....        ....... 
T Consensus        84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  155 (534)
T PRK05852         84 ALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDS--------GPSGGTLS  155 (534)
T ss_pred             HHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccc--------cccccccc
Confidence            99999999999999999999999999999999999999865332211110   011 1111000        0000000 


Q ss_pred             -cHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348          170 -SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF  248 (342)
Q Consensus       170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  248 (342)
                       .+.......   ..........++.++++|||||||.||+|.++|+++...+..  ....+....+|++++..|++|.+
T Consensus       156 ~~~~~~~~~~---~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~  230 (534)
T PRK05852        156 VHLDAATEPT---PATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRA--IITGYRLSPRDATVAVMPLYHGH  230 (534)
T ss_pred             cccccccCCC---ccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHH--HHHHhCCCCcceEEEecCcchhH
Confidence             000000000   001111222467899999999999999999999999887655  33445567889999999999999


Q ss_pred             HHHHHHHHHhhcCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCC--ccCCCCceEEEeecccCCHH
Q 019348          249 GLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKE  324 (342)
Q Consensus       249 g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~~~l~~lr~~~~gG~~l~~~  324 (342)
                      ++...++.++..|++++++.  .+++..+++.++++++|.++++|.+++.|.+.....  ..+++++|.+.++|++++++
T Consensus       231 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~  310 (534)
T PRK05852        231 GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAE  310 (534)
T ss_pred             HHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHH
Confidence            99778999999999999864  478999999999999999999999999998865432  34578999999999999999


Q ss_pred             HHHHHHHhCCCCcccccC
Q 019348          325 LMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       325 ~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+.+.+.|+ .++++.|
T Consensus       311 ~~~~~~~~~~-~~v~~~Y  327 (534)
T PRK05852        311 TAQALQTEFA-APVVCAF  327 (534)
T ss_pred             HHHHHHHHhC-CChhhcc
Confidence            9999999997 8999887

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=7.8e-40  Score=294.42  Aligned_cols=321  Identities=20%  Similarity=0.244  Sum_probs=256.6

Q ss_pred             CCCCCCCCCCHHHHHhhhcccCCCceEEEeCC------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH
Q 019348           19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDAD------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF   92 (342)
Q Consensus        19 ~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~   92 (342)
                      ...+...+.|+++.|.+.+..+|+.+++-...      .-+++||.|.++++.+++..|++.|+++++.|+|+..|++||
T Consensus        67 ~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEW  146 (691)
T KOG1256|consen   67 FSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEW  146 (691)
T ss_pred             CCCCCCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhh
Confidence            34444556899999999999999999987442      238999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEc-ccchhhhhccC-------CC-eEEecCCCccccccccc
Q 019348           93 PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV-PELWDKVKDLN-------LP-AVLLGSKDKVSSSGLIS  163 (342)
Q Consensus        93 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~  163 (342)
                      ++..+||...|.++|||....+++++.++++.+...++|+| ++....+.+..       ++ .+.++...+........
T Consensus       147 iis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~  226 (691)
T KOG1256|consen  147 IISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAEN  226 (691)
T ss_pred             HHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhc
Confidence            99999999999999999999999999999999999999999 44444443321       22 33334333333333334


Q ss_pred             cccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcc----ccCCCeEEE
Q 019348          164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL----VGELDHVVL  239 (342)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~----~~~~~d~~~  239 (342)
                      ....+.+|+++++.+.+..........+++.+.|.|||||||.||||++||+|+.+.++........    ....+|+++
T Consensus       227 ~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~l  306 (691)
T KOG1256|consen  227 NGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYL  306 (691)
T ss_pred             CCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEE
Confidence            4566899999999886422222257889999999999999999999999999999964421111111    122479999


Q ss_pred             EccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC-----------------
Q 019348          240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-----------------  302 (342)
Q Consensus       240 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-----------------  302 (342)
                      +++|+.|++.. ......+..|+++.+..+ |+..+.+.+++.+||.+.++|.+|+.+.+.-.                 
T Consensus       307 SyLPLAHi~er-~~~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A  384 (691)
T KOG1256|consen  307 SYLPLAHIFER-VVELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFA  384 (691)
T ss_pred             EeCcHHHHHHH-HHHHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            99999999999 555566699999999985 88999999999999999999999976654220                 


Q ss_pred             ----C-----CccC-------------------CCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          303 ----V-----RKFD-------------------ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       303 ----~-----~~~~-------------------l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                          .     ....                   -.++|.+++|++|+++++.+.++..++ ++|+++|
T Consensus       385 ~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~eGY  451 (691)
T KOG1256|consen  385 MAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLEGY  451 (691)
T ss_pred             HHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeeecc
Confidence                0     0000                   148999999999999999999999998 9999998

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.6e-39  Score=304.62  Aligned_cols=314  Identities=19%  Similarity=0.277  Sum_probs=250.5

Q ss_pred             CCCCHHHHHhhhcccCCCceEEEeCC-CCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348           25 PSFSMVHFLFRNSASYSSKLALIDAD-SDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (342)
Q Consensus        25 ~~~~l~~~l~~~~~~~p~~~a~~~~~-~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~  102 (342)
                      .+.|+.+++...+..+|++.|+++.+ .++.+||+||.+++.++|++|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus         8 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~   87 (576)
T PRK05620          8 VPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACM   87 (576)
T ss_pred             CCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc
Confidence            34799999999999999999998653 35899999999999999999986 79999999999999999999999999999


Q ss_pred             CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----C-CCeEEecCCCcccc-ccccccccccccHHHHHh
Q 019348          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N-LPAVLLGSKDKVSS-SGLISRSSKIVSFHDLIE  176 (342)
Q Consensus       103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  176 (342)
                      |+++++++|..+.+++.++++.++++++++++.....+.+.    . ...++......... ...........+|.++..
T Consensus        88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  167 (576)
T PRK05620         88 GAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD  167 (576)
T ss_pred             CCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhh
Confidence            99999999999999999999999999999998766554332    1 12222211111100 000111223456777765


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~  256 (342)
                      ...  .........++++++++|||||||.||||.++|+++............+....++++++.+|++|.+++ ...+.
T Consensus       168 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~-~~~~~  244 (576)
T PRK05620        168 GRS--TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSW-GVPLA  244 (576)
T ss_pred             cCC--CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhh-HHHHH
Confidence            433  222233456789999999999999999999999998665333222334556788999999999999998 67788


Q ss_pred             HhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          257 QLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       257 ~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      ++..|+++++.+ .+++..+++.++++++|.+.++|.++..++........+..++|.+++||+++++.+.++|++.++ 
T Consensus       245 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~-  323 (576)
T PRK05620        245 AFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYG-  323 (576)
T ss_pred             HHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhC-
Confidence            999999999885 579999999999999999999999999887654333344568999999999999999999999987 


Q ss_pred             CcccccC
Q 019348          336 ATIFQKI  342 (342)
Q Consensus       336 ~~l~~~Y  342 (342)
                      +++++.|
T Consensus       324 ~~~~~~Y  330 (576)
T PRK05620        324 VDVVHVW  330 (576)
T ss_pred             Cceeeec
Confidence            8898887

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.8e-39  Score=306.10  Aligned_cols=307  Identities=24%  Similarity=0.352  Sum_probs=238.9

Q ss_pred             HHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           30 VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        30 ~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .+.+.+.++++|+++|+++.+    ..+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|++
T Consensus        70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav  149 (637)
T PRK00174         70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV  149 (637)
T ss_pred             HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence            456777788899999999643    2358999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hhh----cc-CCCeEEecCCCccccccccccccccccH
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVK----DL-NLPAVLLGSKDKVSSSGLISRSSKIVSF  171 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (342)
                      ++|++|..+.+++.++++.++++++|+++....         .+.    .. ....+++...... ...  ........+
T Consensus       150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~  226 (637)
T PRK00174        150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGG-DVD--WVEGRDLWW  226 (637)
T ss_pred             EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCC-CcC--cCCCCcccH
Confidence            999999999999999999999999999865421         111    11 1122222111000 000  001112335


Q ss_pred             HHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHH
Q 019348          172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS  251 (342)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~  251 (342)
                      .++.....  ..........+++++|+|||||||.||||+++|++++..+.. .....+....+|++++..|++|..+..
T Consensus       227 ~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~  303 (637)
T PRK00174        227 HELVAGAS--DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAM-TMKYVFDYKDGDVYWCTADVGWVTGHS  303 (637)
T ss_pred             HHHHhhcC--CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHH-HHHhccCCCCCcEEEEcCCchHhhhhH
Confidence            55554322  222233456789999999999999999999999998754322 123334567789999999999999986


Q ss_pred             HHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHH
Q 019348          252 VILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKEL  325 (342)
Q Consensus       252 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~  325 (342)
                      ..++.+|..|+++++.+.    .++..+++.++++++|++.++|++++.|++....  ...++++||.+++||+++++++
T Consensus       304 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~  383 (637)
T PRK00174        304 YIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEA  383 (637)
T ss_pred             HHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHH
Confidence            678999999999999753    4799999999999999999999999999886532  3456889999999999999999


Q ss_pred             HHHHHHhCCC--CcccccC
Q 019348          326 MEDCQKNIPG--ATIFQKI  342 (342)
Q Consensus       326 ~~~~~~~~~~--~~l~~~Y  342 (342)
                      .+++.+.+++  +++++.|
T Consensus       384 ~~~~~~~~~~~~~~i~~~Y  402 (637)
T PRK00174        384 WEWYYKVVGGERCPIVDTW  402 (637)
T ss_pred             HHHHHHHhCCCCCceEecc
Confidence            9999998863  6788877

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=4.7e-39  Score=299.43  Aligned_cols=301  Identities=24%  Similarity=0.381  Sum_probs=247.5

Q ss_pred             CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  107 (342)
                      ++.++|.+.++++|+++++.+.  ++++||+||.+++.++|+.|++.|+++||+|+++++|+.+++++++||+.+|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v   78 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH--DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFV   78 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEE
Confidence            4688999999999999999987  77999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----C-CeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      |+++..+.+++..+++.+++++++++++....+....     . ..+.+......     .........|+++.....  
T Consensus        79 ~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--  151 (515)
T TIGR03098        79 PINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHA-----SEGGGESPSWPKLLALGD--  151 (515)
T ss_pred             eCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccc-----cCCccccccHHHhhcccc--
Confidence            9999999999999999999999999877655433221     1 12222211100     001122334555543322  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G  261 (342)
                       .........++.++++|||||||.||+|.+||+++...+..  ....+....+|++++..|++|.+++ ..++.++..|
T Consensus       152 -~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G  227 (515)
T TIGR03098       152 -ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQS--VATYLENRPDDRLLAVLPLSFDYGF-NQLTTAFYVG  227 (515)
T ss_pred             -ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHH--HHHHhCCCcccEEEEECchhhHhHH-HHHHHHHHcC
Confidence             11222335578999999999999999999999999887554  3344456788999999999999998 7889999999


Q ss_pred             CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK  341 (342)
Q Consensus       262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  341 (342)
                      +++++.+.+++..+++.++++++|++.++|.++..|..... ...+++++|.+++||+++++++.+++++.+++..+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~  306 (515)
T TIGR03098       228 ATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLM  306 (515)
T ss_pred             CEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeee
Confidence            99999999999999999999999999999999999987532 22467899999999999999999999999977889888


Q ss_pred             C
Q 019348          342 I  342 (342)
Q Consensus       342 Y  342 (342)
                      |
T Consensus       307 Y  307 (515)
T TIGR03098       307 Y  307 (515)
T ss_pred             e
Confidence            7

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.8e-39  Score=297.07  Aligned_cols=284  Identities=25%  Similarity=0.322  Sum_probs=240.4

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      ++++++|.+++.++||++|+.+.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFE--EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVA   79 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEE
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|+++..+.+++.++++.++++.++++++..........                       ..+.++...... .....
T Consensus        80 v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~  135 (483)
T PRK03640         80 VLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-----------------------VKFAELMNGPKE-EAEIQ  135 (483)
T ss_pred             EecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-----------------------ccHHHHhhcccc-cCCCC
Confidence            999999999999999999999999998765544322110                       012222222110 11122


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....++++++++|||||||.||+|.+||.++...+..  ....+....+|++++.+|++|++++ ..++.++..|+++++
T Consensus       136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~  212 (483)
T PRK03640        136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVG--SALNLGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVL  212 (483)
T ss_pred             CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHH--HHHhcCCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEe
Confidence            3446689999999999999999999999998877544  3334556789999999999999998 678999999999999


Q ss_pred             ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+.+++..+++.++++++|++.++|+++..|....... ....++|.+++||+++++++.+.+++.  ++++++.|
T Consensus       213 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~Y  285 (483)
T PRK03640        213 VEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSY  285 (483)
T ss_pred             cCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeee
Confidence            99999999999999999999999999999998765332 334689999999999999999999885  58998887

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=8.5e-40  Score=297.82  Aligned_cols=307  Identities=26%  Similarity=0.288  Sum_probs=231.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC--CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~  104 (342)
                      .++.+++.++++.+|+..++....  ....+||+|+.+++.++|..|...|+.+||+|+|+..|+++|+++.+||+.+|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~   95 (613)
T COG1022          16 HTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGA   95 (613)
T ss_pred             ccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence            689999999999999998988553  248999999999999999999999997799999999999999999999999999


Q ss_pred             eEeccCCCCCHHHHHHHhhhcCceEEEEcccch-hhhhccCC--CeEEecC------CCccc-c-ccccc-cccccccHH
Q 019348          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELW-DKVKDLNL--PAVLLGS------KDKVS-S-SGLIS-RSSKIVSFH  172 (342)
Q Consensus       105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~--~~~~~~~------~~~~~-~-~~~~~-~~~~~~~~~  172 (342)
                      +.||+.+..+++++.++|++++++++|++.... +.......  +.+.-..      ..... . ..... ...+...+ 
T Consensus        96 v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (613)
T COG1022          96 VSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF-  174 (613)
T ss_pred             eEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-
Confidence            999999999999999999999999999997443 33322211  0000000      00000 0 00000 00111111 


Q ss_pred             HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  252 (342)
                      . .....  .........++|+|.|+|||||||.||||++||+|+++++..++.... ...++|++++++|+.|++..+.
T Consensus       175 ~-~~~~~--~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~-~~~~~d~~LsfLPlaHi~Er~~  250 (613)
T COG1022         175 L-IDSAG--LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP-PIGPGDRVLSFLPLAHIFERAF  250 (613)
T ss_pred             h-hcccc--cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC-CCCCCcEEEEeCcHHHHHHHHH
Confidence            1 11111  111224667899999999999999999999999999999877444433 3679999999999999999944


Q ss_pred             HHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--------C---------------------
Q 019348          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--------V---------------------  303 (342)
Q Consensus       253 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--------~---------------------  303 (342)
                      .....+..|+++...  .+++.+++.+++++||+++++|.+|+.+.+.-.        .                     
T Consensus       251 ~~~~~~~~g~~~~~~--~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~  328 (613)
T COG1022         251 EGGLALYGGVTVLFK--EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALL  328 (613)
T ss_pred             HHHHHhhcceEEEec--CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhc
Confidence            444555555554444  469999999999999999999999966544210        0                     


Q ss_pred             -------------------CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          304 -------------------RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       304 -------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                                         ...--.++|++++||+++++++...++..  +++++++|
T Consensus       329 ~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGY  384 (613)
T COG1022         329 GGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGY  384 (613)
T ss_pred             ccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEe
Confidence                               00011489999999999999999999998  79999998

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.7e-39  Score=300.44  Aligned_cols=305  Identities=24%  Similarity=0.347  Sum_probs=247.7

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.|.+.++++|+++|+++.+.++.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   97 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL   97 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence            58999999999999999999987667899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhccC---------------C---CeEEecCCCccccccccc
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDLN---------------L---PAVLLGSKDKVSSSGLIS  163 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~---------------~---~~~~~~~~~~~~~~~~~~  163 (342)
                      +++++..+.+++.++++.++++++++++....     .+....               .   ..+.....         .
T Consensus        98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  168 (558)
T PRK12583         98 VNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP---------A  168 (558)
T ss_pred             EecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC---------C
Confidence            99999999999999999999999999764321     111100               0   00000000         0


Q ss_pred             cccccccHHHHHhccCCC----CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEE
Q 019348          164 RSSKIVSFHDLIELSGSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVL  239 (342)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~  239 (342)
                      .......|.+........    .........+++.++++|||||||.||+|.++|+++...+..  ....+....+|+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~~  246 (558)
T PRK12583        169 PPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYF--VAESLGLTEHDRLC  246 (558)
T ss_pred             CCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHH--HHHHhCCCCCCeEE
Confidence            111233444443222100    001112345678999999999999999999999999887554  34445567889999


Q ss_pred             EccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeec
Q 019348          240 CVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA  318 (342)
Q Consensus       240 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG  318 (342)
                      +..|++|.+|.+..++.++..|++++++ ..+++..+++.++++++|+++++|.++..++........+++++|.+++||
T Consensus       247 ~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G  326 (558)
T PRK12583        247 VPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAG  326 (558)
T ss_pred             EecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecC
Confidence            9999999999988899999999999976 457899999999999999999999999998887766667789999999999


Q ss_pred             ccCCHHHHHHHHHhCCCCcccccC
Q 019348          319 APLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++++++.+++.+.+++..+++.|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~Y  350 (558)
T PRK12583        327 APCPIEVMRRVMDEMHMAEVQIAY  350 (558)
T ss_pred             CCCCHHHHHHHHHHcCCcceeccc
Confidence            999999999999999866788877

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.9e-39  Score=310.08  Aligned_cols=312  Identities=20%  Similarity=0.220  Sum_probs=236.4

Q ss_pred             CCHHHHHhhhcccCCCceEEEeC----------CCC-----------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDA----------DSD-----------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF   85 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~----------~~~-----------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~   85 (342)
                      .|+.++|.+.++.+||++|+...          .++           +++||+|+.++++++|..|.+.|+++||+|+|+
T Consensus        58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~  137 (696)
T PLN02387         58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF  137 (696)
T ss_pred             CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            69999999999999999999431          012           348999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccccc
Q 019348           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVSSS  159 (342)
Q Consensus        86 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~  159 (342)
                      ++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+....     .. ++.++........
T Consensus       138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (696)
T PLN02387        138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDS  217 (696)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhh
Confidence            99999999999999999999999999999999999999999999999977665544331     22 3333321110000


Q ss_pred             c-ccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEE
Q 019348          160 G-LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV  238 (342)
Q Consensus       160 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~  238 (342)
                      . ..........|.++...+.. .........++++++|+|||||||.||||++||+++...+...... ......+|++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~-~~~~~~~d~~  295 (696)
T PLN02387        218 SLSGSSNWTVSSFSEVEKLGKE-NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTV-VPKLGKNDVY  295 (696)
T ss_pred             hhhccCCcEEEEHHHHHHhhcc-CCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhh-cCCCCCCCEE
Confidence            0 00111223456766654431 1112233467999999999999999999999999999875543211 1235688999


Q ss_pred             EEccchhHHHHHHHHHHHHhhcCCeEEEccCCC--------HHHHHHHHHhccceEEEecHHHHHHHHcCCCCC------
Q 019348          239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD--------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR------  304 (342)
Q Consensus       239 ~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~------  304 (342)
                      ++++|++|.+++ ...+..+..|+++.+.....        +..++..++++++|++.++|.+++.+.+.....      
T Consensus       296 l~~lPl~Hi~~~-~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~  374 (696)
T PLN02387        296 LAYLPLAHILEL-AAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGG  374 (696)
T ss_pred             EEECcHHHHHHH-HHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccH
Confidence            999999999998 55556678888887764321        234567899999999999999999886532100      


Q ss_pred             ------------------c----------------------c-CCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          305 ------------------K----------------------F-DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       305 ------------------~----------------------~-~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                                        .                      . ..+++|.+++||+++++++.+.++..++ ++++++|
T Consensus       375 ~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g-~~v~~~Y  452 (696)
T PLN02387        375 LAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG-APIGQGY  452 (696)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-CCeeEee
Confidence                              0                      0 0158999999999999999888887787 8999988

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-39  Score=300.45  Aligned_cols=287  Identities=24%  Similarity=0.341  Sum_probs=244.2

Q ss_pred             CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .+.+++.+.++.+||++|+++.  ++.+||+||.++++++|+.|++ .|+++|++|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   80 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIA   80 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            6889999999999999999987  8999999999999999999975 799999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCC-----eEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP-----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      +|+++..+.+++..+++.+++++++++++......+....     .+.+.                  ++.+......  
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~--  140 (496)
T PRK06839         81 VPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISIT------------------SLKEIEDRKI--  140 (496)
T ss_pred             EecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEec------------------chHhhhccCC--
Confidence            9999999999999999999999999998776655443211     11111                  1222222111  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G  261 (342)
                        .......++++++|+|||||||.||+|.++|.++......  ....+....+|++++..|++|.+|+...++.++..|
T Consensus       141 --~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g  216 (496)
T PRK06839        141 --DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALN--NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAG  216 (496)
T ss_pred             --CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHH--HHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcC
Confidence              1122345688999999999999999999999998765333  334445678899999999999999877778999999


Q ss_pred             CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK  341 (342)
Q Consensus       262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  341 (342)
                      +++++++.+++..+++.++++++|++.++|.+++.+++.......+++++|.+++||+++++++.+.+++.  ++++++.
T Consensus       217 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~  294 (496)
T PRK06839        217 GVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQG  294 (496)
T ss_pred             cEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEee
Confidence            99999999999999999999999999999999999999876667788999999999999999999999997  5888888


Q ss_pred             C
Q 019348          342 I  342 (342)
Q Consensus       342 Y  342 (342)
                      |
T Consensus       295 Y  295 (496)
T PRK06839        295 F  295 (496)
T ss_pred             c
Confidence            7

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.2e-39  Score=300.09  Aligned_cols=313  Identities=19%  Similarity=0.267  Sum_probs=248.3

Q ss_pred             CCCCCCCHHHHHhhhcccCCCceEEEeC--CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           22 PSDPSFSMVHFLFRNSASYSSKLALIDA--DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        22 ~~~~~~~l~~~l~~~~~~~p~~~a~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      +...++++.++|...++++||++++++.  +..+++||+||.++++++|++|.+.|+++||+|+++++|+.+++++++||
T Consensus         5 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~   84 (542)
T PRK06018          5 MQDWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI   84 (542)
T ss_pred             hhcCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence            3444589999999999999999999853  22478999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----CCCeEEecCCCccccccccccccccccHHHH
Q 019348          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDL  174 (342)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (342)
                      +++|++++|++|..+.+++.++++.+++++++++.+..+.+.+.     ....+....+....   ..........+.++
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  161 (542)
T PRK06018         85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHM---PQTTLKNAVAYEEW  161 (542)
T ss_pred             HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccc---cccCccccccHHHH
Confidence            99999999999999999999999999999999998766554332     11222221111000   00111233355555


Q ss_pred             HhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHH
Q 019348          175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~  254 (342)
                      +....  ..........++.++|+|||||||.||+|.+||.+.+...........+....+|+++...|++|.+++ ...
T Consensus       162 ~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~-~~~  238 (542)
T PRK06018        162 IAEAD--GDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSW-GIA  238 (542)
T ss_pred             hccCC--cccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhh-HHH
Confidence            54332  222223446678999999999999999999999975322111112334456788999999999999998 566


Q ss_pred             HHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348          255 YDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (342)
Q Consensus       255 ~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  333 (342)
                      +.++..|+++++.. .+++..+++.++++++|.+.++|+++..|.+.......+++++|.+++||+++++.+.++|++ +
T Consensus       239 ~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~  317 (542)
T PRK06018        239 FSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M  317 (542)
T ss_pred             HhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h
Confidence            78899999999874 578999999999999999999999999998877655667899999999999999999999999 7


Q ss_pred             CCCcccccC
Q 019348          334 PGATIFQKI  342 (342)
Q Consensus       334 ~~~~l~~~Y  342 (342)
                      + +++++.|
T Consensus       318 ~-~~~~~~Y  325 (542)
T PRK06018        318 G-VEVRHAW  325 (542)
T ss_pred             C-CCeEeee
Confidence            5 8999887

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-38  Score=295.24  Aligned_cols=296  Identities=22%  Similarity=0.280  Sum_probs=246.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      +++.+.|.+.++++|+++|+++.  ++.+||.||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYR--DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVF   79 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEEC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            57899999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|+++..+.+++.++++.+++++++++++....... ....+.++....             ..+..+.....  .....
T Consensus        80 v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~--~~~~~  143 (497)
T PRK06145         80 LPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-ETPKIVIDAAAQ-------------ADSRRLAQGGL--EIPPQ  143 (497)
T ss_pred             EecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-ccceEEecCccc-------------chhHHHhccCC--CCCCC
Confidence            999999999999999999999999998776544321 112222221100             00111111110  11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....++++++++|||||||.||+|++||+++...+..  ....+....+++++...|++|.+++....+.++..|+++++
T Consensus       144 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~  221 (497)
T PRK06145        144 AAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSID--HVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRI  221 (497)
T ss_pred             CCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEE
Confidence            2346789999999999999999999999999876433  33344567889999999999999986667888999999999


Q ss_pred             ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+.+++..+++.++++++|.+.++|+++..++........+++++|.+++||++++.++.+++++.|++.++++.|
T Consensus       222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~Y  297 (497)
T PRK06145        222 HREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAY  297 (497)
T ss_pred             CCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEee
Confidence            9999999999999999999999999999999988766666788999999999999999999999999878898887

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.8e-39  Score=305.10  Aligned_cols=306  Identities=21%  Similarity=0.255  Sum_probs=233.6

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~  101 (342)
                      +.++.+.|.+.++++||++|+++.+.    .+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus        48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  127 (624)
T PRK12582         48 PRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQ  127 (624)
T ss_pred             ccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence            36899999999999999999987531    16899999999999999999999999999999999999999999999999


Q ss_pred             hCCeEeccCCCCCH-----HHHHHHhhhcCceEEEEcccc--hhhhhcc---CCCeEEecCCCccccccccccccccccH
Q 019348          102 IGAIASTANPVYTV-----SELSKQVKDSNPKLVITVPEL--WDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKIVSF  171 (342)
Q Consensus       102 ~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (342)
                      +|++++|++|.++.     +++.++++.++++++|+++..  ...+...   ....+.++..         ........+
T Consensus       128 ~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~  198 (624)
T PRK12582        128 AGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGP---------GEGIASIAF  198 (624)
T ss_pred             cCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCC---------CcccccccH
Confidence            99999999999875     899999999999999998642  1111111   2223322211         001122344


Q ss_pred             HHHHhccCCCC-CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccC---CCeEEEEccchhHH
Q 019348          172 HDLIELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE---LDHVVLCVLPMFHV  247 (342)
Q Consensus       172 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~---~~d~~~~~~p~~~~  247 (342)
                      .++........ ........+++.++|+|||||||.||||++||+++.......  .......   ..+++++++|++|.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~~~~~~l~~lPl~h~  276 (624)
T PRK12582        199 ADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQ--EQLRPREPDPPPPVSLDWMPWNHT  276 (624)
T ss_pred             HHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHH--HHhccccCCCCCceEEEechHHHH
Confidence            55443221000 001123457899999999999999999999999998875442  2222222   25899999999999


Q ss_pred             HHHHHHHHHHhhcCCeEEEccC-CCH---HHHHHHHHhccceEEEecHHHHHHHHcCCCC----CccCCCCceEEEeecc
Q 019348          248 FGLSVILYDQLQKGNCVVSMGK-FDI---EMALRAIEKYRVTVWWVVPPIILALAKNSLV----RKFDISSLKLVGSGAA  319 (342)
Q Consensus       248 ~g~~~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----~~~~l~~lr~~~~gG~  319 (342)
                      +|+...++.++..|+++++.+. +++   ..+++.++++++|+++++|.+++.|.+....    ...++++||.+++||+
T Consensus       277 ~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa  356 (624)
T PRK12582        277 MGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGA  356 (624)
T ss_pred             HhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCC
Confidence            9986677889999999999763 333   4567778899999999999999988764322    2235789999999999


Q ss_pred             cCCHHHHHHHHHhC----C-CCcccccC
Q 019348          320 PLGKELMEDCQKNI----P-GATIFQKI  342 (342)
Q Consensus       320 ~l~~~~~~~~~~~~----~-~~~l~~~Y  342 (342)
                      ++++++.++|++.+    + +++++++|
T Consensus       357 ~l~~~~~~~~~~~~~~~~g~~~~l~~~Y  384 (624)
T PRK12582        357 TLSDDLYERMQALAVRTTGHRIPFYTGY  384 (624)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence            99999999999863    3 36788887

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.2e-38  Score=298.61  Aligned_cols=300  Identities=21%  Similarity=0.316  Sum_probs=243.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+++.+.++++||++|+++.+ ++++||+||.+++.++|++|++.|+++||+|+++++|+.+++++++||+++|+++
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~~-~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  101 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDNH-GASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS  101 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcCC-CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            579999999999999999999763 4799999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccch-----hhhhc----cC-C-CeEEecCCCccccccccccccccccHHHHH
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKD----LN-L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLI  175 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~----~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (342)
                      +|++|..+.+++.++++.++++++++++...     +.+..    .. . ..+.++...         .......+.++.
T Consensus       102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~  172 (547)
T PRK06087        102 VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA---------PATSSLSLSQII  172 (547)
T ss_pred             eccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcC---------CCcCccCHHHHh
Confidence            9999999999999999999999999975321     11111    11 1 122222110         011122444444


Q ss_pred             hccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHH
Q 019348          176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY  255 (342)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~  255 (342)
                      ....  ..........+++++|+|||||||.||+|.++|.++......  .........+|++++..|++|.+|+...++
T Consensus       173 ~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~  248 (547)
T PRK06087        173 ADYE--PLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERA--YCARLNLTWQDVFMMPAPLGHATGFLHGVT  248 (547)
T ss_pred             ccCC--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhcCCCCCCeEEEecchHHHHHHHHHHH
Confidence            3322  111222345789999999999999999999999999877544  334445678899999999999999877899


Q ss_pred             HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      .++..|+++++.+.+++..+++.++++++|+++.+|..+..++........+++++|.+++||+++++++.+.+.+.  +
T Consensus       249 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~  326 (547)
T PRK06087        249 APFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--G  326 (547)
T ss_pred             HHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--C
Confidence            99999999999999999999999999999999988877777776655555678899999999999999999998875  5


Q ss_pred             CcccccC
Q 019348          336 ATIFQKI  342 (342)
Q Consensus       336 ~~l~~~Y  342 (342)
                      +++++.|
T Consensus       327 ~~l~~~Y  333 (547)
T PRK06087        327 IKLLSVY  333 (547)
T ss_pred             CcEEEEe
Confidence            8999887

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-38  Score=297.95  Aligned_cols=307  Identities=18%  Similarity=0.234  Sum_probs=248.7

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC--CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~  104 (342)
                      .++.++|...++.+|++.++.+..  ..+.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~   89 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA   89 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            578999999999999998887642  236899999999999999999999999999999999999999999999999999


Q ss_pred             eEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCe-EEecCCCccccccccccccccccHHHHHhcc
Q 019348          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (342)
Q Consensus       105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (342)
                      +++|++|..+.+++.++++.+++++++++.+..+.+.+..     ... +.........     ........++++....
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~  164 (539)
T PRK07008         90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLP-----AGSTPLLCYETLVGAQ  164 (539)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccc-----cCCcccccHHHHhccc
Confidence            9999999999999999999999999999987765544321     111 1121111000     0112245566665433


Q ss_pred             CCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHh
Q 019348          179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL  258 (342)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l  258 (342)
                      .  .........+++.++++|||||||.||+|++||.+++...........+....+|++++..|++|.+++ ..++.++
T Consensus       165 ~--~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l  241 (539)
T PRK07008        165 D--GDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW-GLPYSAP  241 (539)
T ss_pred             C--CCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH-HHHHHHH
Confidence            2  222223456788999999999999999999999998754322223334556688999999999998887 6678889


Q ss_pred             hcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348          259 QKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (342)
Q Consensus       259 ~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~  337 (342)
                      ..|++++++ +.+++..+++.++++++|++.++|.++..+++.......+++++|.+++||+++++++.+++++.++ ++
T Consensus       242 ~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~  320 (539)
T PRK07008        242 LTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYG-VE  320 (539)
T ss_pred             hcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhC-Cc
Confidence            999999987 4579999999999999999999999999999887666678899999999999999999999999997 89


Q ss_pred             ccccC
Q 019348          338 IFQKI  342 (342)
Q Consensus       338 l~~~Y  342 (342)
                      +++.|
T Consensus       321 l~~~Y  325 (539)
T PRK07008        321 VIHAW  325 (539)
T ss_pred             eeccc
Confidence            99887

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.8e-38  Score=296.63  Aligned_cols=298  Identities=22%  Similarity=0.317  Sum_probs=244.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++.+||++|+++.  ++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        21 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~   98 (542)
T PRK06155         21 RTLPAMLARQAERYPDRPLLVFG--GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA   98 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEE
Confidence            58999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccccccccccccccccHHHHHhccCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      +|+++.++.+++.++++.+++++++++.+....+....     .. .+.++.....      .....+. ...+....  
T Consensus        99 vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~--  169 (542)
T PRK06155         99 VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASV------SVPAGWS-TAPLPPLD--  169 (542)
T ss_pred             EEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCcccc------ccccccc-hhhhcccC--
Confidence            99999999999999999999999999987766554432     11 2222211100      0000000 00111100  


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  260 (342)
                       .........++++++|+|||||||.||+|+++|.++......  ....+.+..++++++..|++|..++ ..++.++..
T Consensus       170 -~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~--~~~~~~~~~~~~~l~~~pl~~~~~~-~~~~~~l~~  245 (542)
T PRK06155        170 -APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRN--SAEDLEIGADDVLYTTLPLFHTNAL-NAFFQALLA  245 (542)
T ss_pred             -CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHH--HHHhcCCCCCCEEEEecCHHHHHHH-HHHHHHHHc
Confidence             111122345689999999999999999999999999876433  3444556788999999999999998 677999999


Q ss_pred             CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (342)
Q Consensus       261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~  340 (342)
                      |+++++.+++++..+++.++++++|++.++|+++..|.+.........+++|.++.||  +++.+.+++++.++ +++++
T Consensus       246 G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~-~~v~~  322 (542)
T PRK06155        246 GATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERFG-VDLLD  322 (542)
T ss_pred             CceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHcC-CCEEe
Confidence            9999999999999999999999999999999999999988766666778899877665  67999999999997 89998


Q ss_pred             cC
Q 019348          341 KI  342 (342)
Q Consensus       341 ~Y  342 (342)
                      .|
T Consensus       323 ~Y  324 (542)
T PRK06155        323 GY  324 (542)
T ss_pred             ee
Confidence            87

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-39  Score=309.46  Aligned_cols=286  Identities=21%  Similarity=0.277  Sum_probs=235.4

Q ss_pred             CHHHHHhhhccc--CCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           28 SMVHFLFRNSAS--YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        28 ~l~~~l~~~~~~--~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      |+.+++.+.+.+  +||++|+++.   +.+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~   81 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYAA---DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVM   81 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEec---CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence            788999988876  7999999864   37999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      ++|++|.++.+++.++++.++++++|++.+....+....    ..                   ................
T Consensus        82 ~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~~  138 (705)
T PRK06060         82 AFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR----VA-------------------EAAELMSEAARVAPGG  138 (705)
T ss_pred             EEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc----cc-------------------hhhhhhhhccccCCCC
Confidence            999999999999999999999999999876544332110    00                   0011111100001111


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....+++.++++|||||||.||||+++|+++........ ...+.+...|++++..|++|.+++...++.++..|++++
T Consensus       139 ~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v  217 (705)
T PRK06060        139 YEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMC-RKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAV  217 (705)
T ss_pred             CCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHH-HHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEE
Confidence            1234568899999999999999999999999987643321 223456788999999999999988667889999999999


Q ss_pred             Ecc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+ .+++..++..++++++|+++++|+++..+++...  ..++++||.+++||+++++++.++|.+.|+++++++.|
T Consensus       218 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~Y  293 (705)
T PRK06060        218 INSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI  293 (705)
T ss_pred             EeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeee
Confidence            986 5788999999999999999999999999987652  34578999999999999999999999999878999988

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1e-38  Score=303.40  Aligned_cols=312  Identities=19%  Similarity=0.189  Sum_probs=233.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC---C--C--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD---S--D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~---~--~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      .|+.++|.+.++++|+++|+....   .  +  .++||+|+.+++.++|..|.+.|+++||+|+|+++|+++|+++++||
T Consensus        42 ~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~  121 (660)
T PLN02430         42 TTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEAC  121 (660)
T ss_pred             CCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            689999999999999999997431   1  1  35799999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh-hhhcc-----CCCeE-EecCCCccccccccccccccccHH
Q 019348          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-KVKDL-----NLPAV-LLGSKDKVSSSGLISRSSKIVSFH  172 (342)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  172 (342)
                      +++|++++|+++..+++++.++++.++++++|+++.... .+...     ....+ .++...................|+
T Consensus       122 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
T PLN02430        122 AAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWI  201 (660)
T ss_pred             HHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHH
Confidence            999999999999999999999999999999999865332 22111     11222 222111000000000111234677


Q ss_pred             HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-c--cccCCCeEEEEccchhHHHH
Q 019348          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-E--LVGELDHVVLCVLPMFHVFG  249 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~--~~~~~~d~~~~~~p~~~~~g  249 (342)
                      ++...+.. .........++++++|+|||||||.||||++||+++...+....... .  .....+|++++.+|++|.++
T Consensus       202 ~~~~~~~~-~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~  280 (660)
T PLN02430        202 DFLHMGKE-NPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILD  280 (660)
T ss_pred             HHHHhhcc-CCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHH
Confidence            76654431 11112234678999999999999999999999999988755432211 1  13567899999999999999


Q ss_pred             HHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC---------------------------
Q 019348          250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL---------------------------  302 (342)
Q Consensus       250 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~---------------------------  302 (342)
                      .. ..+.++..|+++++... ++..+++.++++++|++.++|.+++.+.+...                           
T Consensus       281 ~~-~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
T PLN02430        281 RM-IEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNR  358 (660)
T ss_pred             HH-HHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhc
Confidence            84 45667899999988754 78899999999999999999999988765210                           


Q ss_pred             ----CCcc---C-----------CCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          303 ----VRKF---D-----------ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       303 ----~~~~---~-----------l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                          ....   +           ..++|.+++||+++++++.+.+ +.++++.++++|
T Consensus       359 ~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~Y  415 (660)
T PLN02430        359 GYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGY  415 (660)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeec
Confidence                0000   0           1589999999999999986554 555547888887

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-39  Score=300.95  Aligned_cols=297  Identities=17%  Similarity=0.250  Sum_probs=235.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.|.+.++++|+++|+++.+.++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        14 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~   93 (540)
T PRK05857         14 STVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIA   93 (540)
T ss_pred             cchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence            58999999999999999999876556789999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----CCCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      +|+++..+.+++.++++.++++++++++........+     ..+.+.++....          ..  .+.......   
T Consensus        94 v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~---  158 (540)
T PRK05857         94 VMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAV----------TR--ESEHSLDAA---  158 (540)
T ss_pred             EecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccc----------cc--ccccccccc---
Confidence            9999999999999999999999999987653222111     112222221100          00  000000000   


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh--hccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--QELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                      .........++++++++|||||||.||||.++|+++.++.......  ..+....+++.++..|++|.+++ ...+.++.
T Consensus       159 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l-~~~~~~l~  237 (540)
T PRK05857        159 SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL-WWILTCLM  237 (540)
T ss_pred             ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchH-HHHHHHhh
Confidence            0111223456899999999999999999999999998764332111  11233467899999999999998 67888999


Q ss_pred             cCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccc
Q 019348          260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (342)
Q Consensus       260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~  339 (342)
                      .|+++++. +.++..+++.++++++|+++++|.+++.|+........+++++|.+++||++++....+ +.+.++ ++++
T Consensus       238 ~G~~~v~~-~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~g-~~i~  314 (540)
T PRK05857        238 HGGLCVTG-GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEATG-VRTA  314 (540)
T ss_pred             cceeEEec-CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHhC-Ceee
Confidence            99998764 46889999999999999999999999999987766667899999999999999987775 556676 8998


Q ss_pred             ccC
Q 019348          340 QKI  342 (342)
Q Consensus       340 ~~Y  342 (342)
                      +.|
T Consensus       315 ~~Y  317 (540)
T PRK05857        315 QVY  317 (540)
T ss_pred             ccc
Confidence            887

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.7e-39  Score=351.26  Aligned_cols=287  Identities=20%  Similarity=0.259  Sum_probs=247.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++++||++|+++.  ++++||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|+++
T Consensus      3095 ~~~~~l~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~ 3172 (3956)
T PRK12467       3095 RLVHQLIEAQVARTPEAPALVFG--DQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAY 3172 (3956)
T ss_pred             ccHHHHHHHHHHhCCCcceEeeC--CcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEe
Confidence            68999999999999999999998  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-CCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      +|++|.++.+++.++++.+++++++++......+.... ...+.++..                   .. ....  ....
T Consensus      3173 vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~-------------------~~-~~~~--~~~~ 3230 (3956)
T PRK12467       3173 VPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRL-------------------DL-NGYS--ENNP 3230 (3956)
T ss_pred             ecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecch-------------------hh-cccC--CCCC
Confidence            99999999999999999999999999877655443221 122222211                   00 0001  1122


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|||||||+||||+++|+++.+.+..  ....+.++.+|+++++.|++|..+. ..++.+|..|++++
T Consensus      3231 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~ 3307 (3956)
T PRK12467       3231 STRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCW--IAEAYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLV 3307 (3956)
T ss_pred             cccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHH--HHHhcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEE
Confidence            23456789999999999999999999999999998554  4555667889999999999999887 88999999999999


Q ss_pred             EccC--CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~--~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++.  +++..+++.|+++++|++.++|++++.+++..  ...++++||.+++|||++++++.++|++.+++++++++|
T Consensus      3308 i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~Y 3384 (3956)
T PRK12467       3308 VRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGY 3384 (3956)
T ss_pred             ECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCc
Confidence            9876  78999999999999999999999999998764  344678999999999999999999999999888999998

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.1e-38  Score=297.83  Aligned_cols=304  Identities=26%  Similarity=0.390  Sum_probs=248.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .+|.++|.+.++++|+++|+++.+.++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        16 ~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   95 (559)
T PRK08315         16 QTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAIL   95 (559)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEE
Confidence            58999999999999999999987667899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhccCC-------------------CeEEecCCCcccccccc
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDLNL-------------------PAVLLGSKDKVSSSGLI  162 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~-------------------~~~~~~~~~~~~~~~~~  162 (342)
                      +|++|..+.+++..+++.++++++++++....     .+.+...                   ..+..+.          
T Consensus        96 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  165 (559)
T PRK08315         96 VTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD----------  165 (559)
T ss_pred             EecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc----------
Confidence            99999999999999999999999999875421     1111100                   0111110          


Q ss_pred             ccccccccHHHHHhccCCCC----CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEE
Q 019348          163 SRSSKIVSFHDLIELSGSVT----DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV  238 (342)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~  238 (342)
                      ........+.++........    .........+++++++|||||||.||+|.++|.++...+..  ......+..+|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~  243 (559)
T PRK08315        166 EKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYF--IGEAMKLTEEDRL  243 (559)
T ss_pred             cCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHH--HHHhcCCCCCceE
Confidence            01122234444433221000    11122345678999999999999999999999999887554  4445566788999


Q ss_pred             EEccchhHHHHHHHHHHHHhhcCCeEEE-ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEee
Q 019348          239 LCVLPMFHVFGLSVILYDQLQKGNCVVS-MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSG  317 (342)
Q Consensus       239 ~~~~p~~~~~g~~~~~~~~l~~G~~~v~-~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~g  317 (342)
                      +...|++|.++++..++.++..|+++++ ...+++..+++.++++++|++.++|+++..++........++++||.+++|
T Consensus       244 ~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~  323 (559)
T PRK08315        244 CIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMA  323 (559)
T ss_pred             EEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEec
Confidence            9999999999997889999999999995 456899999999999999999999999999988776666788999999999


Q ss_pred             cccCCHHHHHHHHHhCCCCcccccC
Q 019348          318 AAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       318 G~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      |+++++++.+++++.++..++++.|
T Consensus       324 G~~~~~~~~~~~~~~~~~~~l~~~Y  348 (559)
T PRK08315        324 GSPCPIEVMKRVIDKMHMSEVTIAY  348 (559)
T ss_pred             CCCCCHHHHHHHHHHcCCcceeEEE
Confidence            9999999999999999855688877

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=5.1e-39  Score=301.48  Aligned_cols=295  Identities=22%  Similarity=0.342  Sum_probs=235.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCC--------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSD--------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~--------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA   98 (342)
                      +|+.+++.+.++++|+++|+++.+.+        +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la   85 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFA   85 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence            68999999999999999999976322        2899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEccc--chhhhhccC---C-CeEEecCCCccccccccccccccccHH
Q 019348           99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE--LWDKVKDLN---L-PAVLLGSKDKVSSSGLISRSSKIVSFH  172 (342)
Q Consensus        99 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (342)
                      |+++|++++|++|.++.+++.+++++++++++|++++  ....+....   . ..+.++..          .......+.
T Consensus        86 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~  155 (552)
T PRK09274         86 LFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGR----------LLWGGTTLA  155 (552)
T ss_pred             HHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccc----------cccCCccHH
Confidence            9999999999999999999999999999999998752  222221111   1 11111110          011112344


Q ss_pred             HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  252 (342)
                      ++...... .........++++++|+|||||||.||+|+++|+++...+..  ....+....+|+.++..|++|.+++  
T Consensus       156 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~pl~~~~~~--  230 (552)
T PRK09274        156 TLLRDGAA-APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEA--LREDYGIEPGEIDLPTFPLFALFGP--  230 (552)
T ss_pred             HhcccCcc-ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHH--HHHHhCCCCCceeeeccCHHHhhhh--
Confidence            43311110 112223446689999999999999999999999999987554  3445556788999999999886653  


Q ss_pred             HHHHHhhcCCeEEEcc-------CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHH
Q 019348          253 ILYDQLQKGNCVVSMG-------KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL  325 (342)
Q Consensus       253 ~~~~~l~~G~~~v~~~-------~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~  325 (342)
                            ..|+++++++       .+++..+++.++++++|+++++|++++.|.+.......++++||.+++||+++++++
T Consensus       231 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~  304 (552)
T PRK09274        231 ------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAV  304 (552)
T ss_pred             ------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHH
Confidence                  3588888764       468999999999999999999999999999877656678999999999999999999


Q ss_pred             HHHHHHhCC-CCcccccC
Q 019348          326 MEDCQKNIP-GATIFQKI  342 (342)
Q Consensus       326 ~~~~~~~~~-~~~l~~~Y  342 (342)
                      .+++++.|+ ++++++.|
T Consensus       305 ~~~~~~~~~~~~~~~~~Y  322 (552)
T PRK09274        305 IERFRAMLPPDAEILTPY  322 (552)
T ss_pred             HHHHHHHcCCCceEEccc
Confidence            999999997 37899887

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.3e-38  Score=295.58  Aligned_cols=312  Identities=21%  Similarity=0.358  Sum_probs=243.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .|+.+.|.+.++++|+++|+++.  ++.+||+||.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~  101 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLI  101 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            68999999999999999999986  7899999999999999999987 59999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCcccc-c---------------cccccc
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSS-S---------------GLISRS  165 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~---------------~~~~~~  165 (342)
                      ++|++|..+.+++.++++.++++++|++.+....+.+.    ..+.+.......... .               ......
T Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK05677        102 VVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL  181 (562)
T ss_pred             EeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCC
Confidence            99999999999999999999999999987665443221    122222221100000 0               000001


Q ss_pred             cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccC-CCeEEEEccch
Q 019348          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPM  244 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~d~~~~~~p~  244 (342)
                      .....+.+.+..... .........++++++|+|||||||.||||+++|+++...+............ ..+++++.+|+
T Consensus       182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl  260 (562)
T PRK05677        182 PQAVKFNDALAKGAG-QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPL  260 (562)
T ss_pred             cccccHHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcH
Confidence            122334444332221 1112233467899999999999999999999999998764332211112222 35788999999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCH
Q 019348          245 FHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (342)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~  323 (342)
                      +|.+++...++..+..|++.++.+ .+++..+++.++++++|+++++|.++..++........+++++|.+++||+++++
T Consensus       261 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~  340 (562)
T PRK05677        261 YHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL  340 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCH
Confidence            999998667888888998877664 5789999999999999999999999999988765555567899999999999999


Q ss_pred             HHHHHHHHhCCCCcccccC
Q 019348          324 ELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       324 ~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++.+.|++.++ +++++.|
T Consensus       341 ~~~~~~~~~~~-~~v~~~Y  358 (562)
T PRK05677        341 ATAERWKEVTG-CAICEGY  358 (562)
T ss_pred             HHHHHHHHHcC-CCeeccC
Confidence            99999999886 8999887

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-38  Score=296.02  Aligned_cols=289  Identities=17%  Similarity=0.232  Sum_probs=236.4

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      +.++.+.+.+.++.+||++|+++.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v  111 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIIDD--DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGAD  111 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeE
Confidence            379999999999999999999986  679999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      ++|+++..+.+++.++++.++++.++++++....+.........++...                 ....  .   ... 
T Consensus       112 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~--~---~~~-  168 (516)
T PRK13383        112 VVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPAT-----------------AGAE--E---SGG-  168 (516)
T ss_pred             EEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccch-----------------hhhh--c---CCC-
Confidence            9999999999999999999999999999877665544332222222110                 0000  0   000 


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                       .....++.++|+|||||||.||+|.++|....................+|+++...|++|.+|+ ..++.++..|++++
T Consensus       169 -~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~-~~~~~~l~~G~~~~  246 (516)
T PRK13383        169 -RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGL-GMLMLTIALGGTVL  246 (516)
T ss_pred             -CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhH-HHHHHHHhcCCEEE
Confidence             0112345678999999999999999999743222111112223445678999999999999999 67888999999999


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +...+++..+++.++++++|.+.++|.++..+.+....  ...+++++|.+++||+++++++.++|.+.|+ ..+++.|
T Consensus       247 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~Y  324 (516)
T PRK13383        247 THRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYG-DILYNGY  324 (516)
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcC-chhhhcc
Confidence            99889999999999999999999999999999876532  2345789999999999999999999999997 8898887

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-38  Score=301.28  Aligned_cols=309  Identities=23%  Similarity=0.314  Sum_probs=238.2

Q ss_pred             CCH-HHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348           27 FSM-VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (342)
Q Consensus        27 ~~l-~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~  101 (342)
                      .|+ .+.|.++++.+|+++|+++.+    ..+.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||++
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  131 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACAR  131 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            344 567778888899999998632    247899999999999999999999999999999999999999999999999


Q ss_pred             hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch---------hhhh----cc---CCCeEEecCCCccccccccccc
Q 019348          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVK----DL---NLPAVLLGSKDKVSSSGLISRS  165 (342)
Q Consensus       102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~  165 (342)
                      +|++++|++|..+.+++.++++.++++++|+++...         +.+.    ..   ....+.++.....  .  ....
T Consensus       132 ~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~--~--~~~~  207 (629)
T PRK10524        132 IGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAP--M--ARVA  207 (629)
T ss_pred             hCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC--c--Cccc
Confidence            999999999999999999999999999999976421         1111    11   1123333211000  0  0001


Q ss_pred             cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchh
Q 019348          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~  245 (342)
                      .....+.++...... .........++++++|+|||||||.||||+++|.+++..... .....+....+|++++..|++
T Consensus       208 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~  285 (629)
T PRK10524        208 GRDVDYATLRAQHLG-ARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALAT-SMDTIFGGKAGETFFCASDIG  285 (629)
T ss_pred             CCcccHHHHHhcCCC-CCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHH-HHHHhcCCCCCCEEEEcCCCC
Confidence            112345554432210 111122345689999999999999999999999987543211 123334567889999999999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEcc----CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecc
Q 019348          246 HVFGLSVILYDQLQKGNCVVSMG----KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAA  319 (342)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~  319 (342)
                      |..+....++.++..|+++++.+    ..++..+++.++++++|+++++|++++.|.+...  ....++++||.+++||+
T Consensus       286 ~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge  365 (629)
T PRK10524        286 WVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGE  365 (629)
T ss_pred             eeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCC
Confidence            99887677899999999999875    3478999999999999999999999999887643  23457899999999999


Q ss_pred             cCCHHHHHHHHHhCCCCcccccC
Q 019348          320 PLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++++++.+++++.++ +++++.|
T Consensus       366 ~l~~~~~~~~~~~~~-~~v~~~Y  387 (629)
T PRK10524        366 PLDEPTASWISEALG-VPVIDNY  387 (629)
T ss_pred             CCCHHHHHHHHHhcC-CCeEecc
Confidence            999999999999997 8888887

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-38  Score=294.77  Aligned_cols=289  Identities=15%  Similarity=0.172  Sum_probs=234.5

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .|+.+++.+.+  .|+++|+++.  +..+||.||.++++++|..|.+.|+ ++||+|+++++|+++++++++||+++|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~   78 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG--DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYV   78 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCE
Confidence            47888888765  6999999987  7899999999999999999999999 79999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---CCeEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (342)
                      ++|++|..+.+++.++++.+++++++++++....+.+..   ...+.++..                .+.+++....  .
T Consensus        79 ~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~----------------~~~~~~~~~~--~  140 (540)
T PRK13388         79 LVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTP----------------AYAELVAAAG--A  140 (540)
T ss_pred             EEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccch----------------hhhhhhcccc--C
Confidence            999999999999999999999999999987766554432   122222111                2223332111  1


Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCC
Q 019348          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (342)
Q Consensus       183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (342)
                      ........++++++++|||||||.||||.++|.++...+..  ....+....+|+++...|++|.+++...++.++..|+
T Consensus       141 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~  218 (540)
T PRK13388        141 LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRA--LTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGA  218 (540)
T ss_pred             cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHH--HHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCc
Confidence            11112346789999999999999999999999999876544  3445556788999999999999998555667899999


Q ss_pred             eEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       263 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++++.+.+++..+++.++++++|++..+|..+..++...........+++.+ + |+++++...++|.+.++ +++++.|
T Consensus       219 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~-~~l~~~Y  295 (540)
T PRK13388        219 AVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRFG-CQVEDGY  295 (540)
T ss_pred             EEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHhC-Cceeccc
Confidence            9999988999999999999999999999999999887654333334466643 3 56778899999999997 8999988

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.6e-38  Score=294.06  Aligned_cols=300  Identities=22%  Similarity=0.253  Sum_probs=244.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~  102 (342)
                      .++.+.+.+.++.+|+++|++..+    .++.+||+||.+++.++|.+|++.|+++|++|+++++|+.+++++++||+++
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~  101 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI  101 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            589999999999999999998521    2468999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhcc----C-CC-eEEecCCCccccccccccccccccH
Q 019348          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDL----N-LP-AVLLGSKDKVSSSGLISRSSKIVSF  171 (342)
Q Consensus       103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~----~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~  171 (342)
                      |++++|++|..+.+++.++++.++++++++++....     ...+.    . .. .+..+..             ....+
T Consensus       102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  168 (538)
T TIGR03208       102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD-------------GDDSF  168 (538)
T ss_pred             CEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC-------------CCcCH
Confidence            999999999999999999999999999999876421     11111    1 11 2222111             11123


Q ss_pred             HHHHhccCCC--CC----CCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchh
Q 019348          172 HDLIELSGSV--TD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (342)
Q Consensus       172 ~~~~~~~~~~--~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~  245 (342)
                      ..++......  ..    .......++++++++|||||||.||+|+++|+++...+..  ....+....+|++++.+|++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~  246 (538)
T TIGR03208       169 DRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHP--YAERLELGGGDVILMASPMA  246 (538)
T ss_pred             HHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHH--HHhhcCCCCCCeEEEeCCch
Confidence            3332211000  00    1112346789999999999999999999999999887554  33444567889999999999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHH
Q 019348          246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL  325 (342)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~  325 (342)
                      |..+++..++.++..|+++++.+.+++..+++.++++++|++.++|.++..+.........+++++|.+++||+++++.+
T Consensus       247 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~  326 (538)
T TIGR03208       247 HQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGIL  326 (538)
T ss_pred             hHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHH
Confidence            99998778999999999999999899999999999999999999999999988765444567889999999999999999


Q ss_pred             HHHHHHhCCCCcccccC
Q 019348          326 MEDCQKNIPGATIFQKI  342 (342)
Q Consensus       326 ~~~~~~~~~~~~l~~~Y  342 (342)
                      .+++.+.++ +++++.|
T Consensus       327 ~~~~~~~~~-~~~~~~Y  342 (538)
T TIGR03208       327 VERAWELLG-ALIVSAW  342 (538)
T ss_pred             HHHHHHHcC-CeEEeee
Confidence            999999987 8899887

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=8.2e-39  Score=307.78  Aligned_cols=295  Identities=21%  Similarity=0.255  Sum_probs=236.1

Q ss_pred             CCHHHHHhhhcccCCC-ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .|+.++|.+.++++|+ ++|+.+. ..+++||+||.++++++|+.|++. +++||+|+++++|+++++++++||+++|++
T Consensus       204 ~t~~~~l~~~~~~~p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v  281 (718)
T PRK08043        204 ETLYEALLSAQYRYGAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRI  281 (718)
T ss_pred             CCHHHHHHHHHHHhCCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCc
Confidence            6899999999999998 5787753 247899999999999999999887 599999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhc--cC-----CCeEEecCCCccccccccccccccccHHHH----
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD--LN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDL----  174 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  174 (342)
                      ++|+++.++.+++.++++++++++++++.+..+....  ..     ...+.++...            ....+...    
T Consensus       282 ~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~  349 (718)
T PRK08043        282 PAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLK------------DDVTTADKLWIF  349 (718)
T ss_pred             ccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhh------------hhcchhHHHHHH
Confidence            9999999999999999999999999998765442111  10     1112111100            00011100    


Q ss_pred             HhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHH
Q 019348          175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~  254 (342)
                      .....  .........++++++++|||||||.||||++||+++.+.+..  .........+|++++.+|++|.+++...+
T Consensus       350 ~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~  425 (718)
T PRK08043        350 AHLLM--PRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQ--IKTIADFTPNDRFMSALPLFHSFGLTVGL  425 (718)
T ss_pred             HHHhC--CccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHH--HHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence            00000  111112345789999999999999999999999999887554  33445567889999999999999986778


Q ss_pred             HHHhhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348          255 YDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (342)
Q Consensus       255 ~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  333 (342)
                      +.++..|+++++.+. +++..+++.++++++|+++.+|+++..+.+..  ...++++||.+++||+++++++.+.|++.|
T Consensus       426 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~  503 (718)
T PRK08043        426 FTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF  503 (718)
T ss_pred             HHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc
Confidence            999999999998864 57788999999999999999999998887642  345688999999999999999999999999


Q ss_pred             CCCcccccC
Q 019348          334 PGATIFQKI  342 (342)
Q Consensus       334 ~~~~l~~~Y  342 (342)
                      + +++++.|
T Consensus       504 g-~~l~~~Y  511 (718)
T PRK08043        504 G-LRILEGY  511 (718)
T ss_pred             C-CCeeccc
Confidence            7 8999988

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-38  Score=292.21  Aligned_cols=299  Identities=21%  Similarity=0.315  Sum_probs=242.5

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      ++|+.+++...++.+|+++|+++.  ++++||+||.+++.++|+.|++.|+++||+|+++++|+.+++++++||+++|++
T Consensus         6 ~~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~   83 (528)
T PRK07470          6 VMNLAHFLRQAARRFPDRIALVWG--DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV   83 (528)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEEC--CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeE
Confidence            378999999999999999999987  789999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----C-CeEEecCCCccccccccccccccccHHHHHhccC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (342)
                      ++++++..+.+++.++++.++++.++++++.........     . ..+.+...            .....+.++.....
T Consensus        84 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~  151 (528)
T PRK07470         84 WVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGA------------RAGLDYEALVARHL  151 (528)
T ss_pred             EEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCC------------cccccHHHHHhcCC
Confidence            999999999999999999999999999987654433221     1 11222110            01234555544322


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                      . .........++++++|+|||||||.||+|.++|.++...+..............|+++...|++|.+++ ..++ .+.
T Consensus       152 ~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~-~~~  228 (528)
T PRK07470        152 G-ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGI-HQLC-QVA  228 (528)
T ss_pred             C-CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHH-HHHH-HHh
Confidence            1 112223456689999999999999999999999999765433222222234678999999999999998 4444 567


Q ss_pred             cCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348          260 KGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (342)
Q Consensus       260 ~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~  337 (342)
                      .|+++++.+  .++++.+++.++++++|++.++|++++.+.+.......+++++|.+++||+++++...+++++.++ .+
T Consensus       229 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~  307 (528)
T PRK07470        229 RGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLG-KV  307 (528)
T ss_pred             cCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhC-cH
Confidence            777776654  578999999999999999999999999999887666678899999999999999999999999887 78


Q ss_pred             ccccC
Q 019348          338 IFQKI  342 (342)
Q Consensus       338 l~~~Y  342 (342)
                      +++.|
T Consensus       308 ~~~~Y  312 (528)
T PRK07470        308 LVQYF  312 (528)
T ss_pred             HHHhC
Confidence            88877

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-38  Score=304.61  Aligned_cols=306  Identities=18%  Similarity=0.220  Sum_probs=232.5

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC-------------------------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD-------------------------SDESLSFSQFKSIVIKVSHSFRHLGITKKDV   81 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~-------------------------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~   81 (342)
                      .|+.++|.+.++++||++|+...+                         ..+++||+||.++++++|+.|.+.|+++||+
T Consensus        69 ~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~  148 (700)
T PTZ00216         69 PNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSN  148 (700)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            689999999999999999998741                         2479999999999999999999999999999


Q ss_pred             EEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-------CCCeEEecCCC
Q 019348           82 VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-------NLPAVLLGSKD  154 (342)
Q Consensus        82 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~~  154 (342)
                      |+|+++|+++|+++++||+++|++++|+++..+.+++.++++++++++++++.+....+...       ....+.++...
T Consensus       149 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~  228 (700)
T PTZ00216        149 VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLP  228 (700)
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCCc
Confidence            99999999999999999999999999999999999999999999999999987654433211       11223332210


Q ss_pred             ccccccccccccccccHHHHHhccC--CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh--cc
Q 019348          155 KVSSSGLISRSSKIVSFHDLIELSG--SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--EL  230 (342)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~  230 (342)
                      ..    .........+|++++..+.  ...........++++++|+|||||||.||||++||+++.+.+.......  ..
T Consensus       229 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~  304 (700)
T PTZ00216        229 AS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLI  304 (700)
T ss_pred             cc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhccccc
Confidence            00    0011223456777765541  0011112334678999999999999999999999999998755432211  11


Q ss_pred             c-cCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHH-------HHHhccceEEEecHHHHHHHHcCCC
Q 019348          231 V-GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR-------AIEKYRVTVWWVVPPIILALAKNSL  302 (342)
Q Consensus       231 ~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~l~~l~~~~~  302 (342)
                      . ...+|++++++|++|.+++ ......+..|+++++.   ++..+.+       .++++++|++.++|.+++.+.+...
T Consensus       305 ~~~~~~d~~ls~lPl~H~~~~-~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~  380 (700)
T PTZ00216        305 GPPEEDETYCSYLPLAHIMEF-GVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVE  380 (700)
T ss_pred             CCCCCCCEEEEEChHHHHHHH-HHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHH
Confidence            1 3578999999999999998 4555668888888774   3555554       6889999999999999988764311


Q ss_pred             C-------------------------Ccc----------------CCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348          303 V-------------------------RKF----------------DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK  341 (342)
Q Consensus       303 ~-------------------------~~~----------------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  341 (342)
                      .                         ...                ..+++|.+++||+++++++.+.++..++  +++++
T Consensus       381 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~  458 (700)
T PTZ00216        381 AKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQG  458 (700)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhc
Confidence            0                         000                0158999999999999999987777664  88888


Q ss_pred             C
Q 019348          342 I  342 (342)
Q Consensus       342 Y  342 (342)
                      |
T Consensus       459 Y  459 (700)
T PTZ00216        459 W  459 (700)
T ss_pred             c
Confidence            7

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.6e-38  Score=323.22  Aligned_cols=287  Identities=19%  Similarity=0.255  Sum_probs=242.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++.+||++|+++.  ++.+||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus       458 ~~l~~~~~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~  535 (1296)
T PRK10252        458 TTLSALVAQQAAKTPDAPALADA--RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW  535 (1296)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            58999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|++|..+.+++.++++.+++++++++.+....+.......+ ..                   +.......   .....
T Consensus       536 vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~---~~~~~  592 (1296)
T PRK10252        536 LPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTS-LC-------------------YNAPLAPQ---GAAPL  592 (1296)
T ss_pred             EecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCcee-ee-------------------cccccccc---cCCCC
Confidence            999999999999999999999999998876555433210000 00                   00000000   01111


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....++++++|+|||||||.||||+++|+++.+.+..  ....+.+.++|++++..|++|..++ ..++.+|..|+++++
T Consensus       593 ~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~  669 (1296)
T PRK10252        593 QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLW--MQNHYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVM  669 (1296)
T ss_pred             CCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHH--HHHhcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEE
Confidence            2235789999999999999999999999999988544  5556667889999999999999988 788999999999999


Q ss_pred             cc---CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc--cCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348          267 MG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK  341 (342)
Q Consensus       267 ~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  341 (342)
                      .+   ..++..+++.++++++|++.++|+++..+++......  ..++++|.+++||+++++++.++|++.++ +++++.
T Consensus       670 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~l~n~  748 (1296)
T PRK10252        670 AEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTG-APLHNL  748 (1296)
T ss_pred             CChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCC-CEEEeC
Confidence            86   3589999999999999999999999999987643322  35689999999999999999999999886 899998


Q ss_pred             C
Q 019348          342 I  342 (342)
Q Consensus       342 Y  342 (342)
                      |
T Consensus       749 Y  749 (1296)
T PRK10252        749 Y  749 (1296)
T ss_pred             C
Confidence            8

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-38  Score=295.26  Aligned_cols=304  Identities=22%  Similarity=0.295  Sum_probs=240.8

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      +|+.+++.+.++++||++|+.+.  ++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~   80 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCG--DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP   80 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEE
Confidence            68999999999999999999997  8899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccccccccccccccccHHHHHhccCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      +++++.++.+++.++++.+++++++++.+....+.+..     .. .+.++....      .....+...+++.+.... 
T Consensus        81 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-  153 (533)
T PRK07798         81 VNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSG------NDLLPGAVDYEDALAAGS-  153 (533)
T ss_pred             EecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcc------cccCCccccHHHHHhccC-
Confidence            99999999999999999999999999987666554432     11 222221110      011113445666655433 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh-------hccc------cCCCeEEEEccchhHH
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-------QELV------GELDHVVLCVLPMFHV  247 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-------~~~~------~~~~d~~~~~~p~~~~  247 (342)
                       ......... .+.++|+|||||||.||+|+++|.++..........       ....      ...+++++...|++|.
T Consensus       154 -~~~~~~~~~-~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~  231 (533)
T PRK07798        154 -PERDFGERS-PDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHG  231 (533)
T ss_pred             -CcCCCCCCC-CCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhh
Confidence             111111222 345689999999999999999999987653221100       0000      1456899999999999


Q ss_pred             HHHHHHHHHHhhcCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHH-HHHcCCC-CCccCCCCceEEEeecccCCH
Q 019348          248 FGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIIL-ALAKNSL-VRKFDISSLKLVGSGAAPLGK  323 (342)
Q Consensus       248 ~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~-~l~~~~~-~~~~~l~~lr~~~~gG~~l~~  323 (342)
                      .++ ..++.++..|+++++.+  .+++..+++.++++++|.+.++|..+. .+..... ....+++++|.+++||+++++
T Consensus       232 ~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~  310 (533)
T PRK07798        232 AGQ-WAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSP  310 (533)
T ss_pred             hhH-HHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCH
Confidence            999 68899999999999998  789999999999999999999986553 3333322 234568899999999999999


Q ss_pred             HHHHHHHHhCCCCcccccC
Q 019348          324 ELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       324 ~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++.++|++.+++..+++.|
T Consensus       311 ~~~~~~~~~~~~~~~~~~Y  329 (533)
T PRK07798        311 SVKEALLELLPNVVLTDSI  329 (533)
T ss_pred             HHHHHHHHHcCCCeEEeee
Confidence            9999999999778898887

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=8e-38  Score=290.42  Aligned_cols=294  Identities=24%  Similarity=0.334  Sum_probs=245.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .+|.+++.+++ .+|++.|+.+.+ ++.+||.||.+++.++|..|++.|+++||+|+++++|+.+++++++||+++|+++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~~-~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~   80 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETPD-GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF   80 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeCC-CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            58999999999 999999998743 6899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CC-eEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      +|+++..+.+++..+++.++++++++++.....+....    .. .+.++...             ...+.+......  
T Consensus        81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--  145 (504)
T PRK07514         81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADG-------------TGSLLEAAAAAP--  145 (504)
T ss_pred             EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCC-------------cccHHHhhhhcC--
Confidence            99999999999999999999999999987765544331    11 22222110             011112211111  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G  261 (342)
                      ..........+++++|+|||||||.||+|.++|+++...+..  .........+|++++..|++|..++...++.++..|
T Consensus       146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G  223 (504)
T PRK07514        146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALT--LVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAG  223 (504)
T ss_pred             cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHH--HHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcC
Confidence            112223456789999999999999999999999999988544  344455678899999999999999877889999999


Q ss_pred             CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK  341 (342)
Q Consensus       262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  341 (342)
                      +++++.+..++..+++.+  .++|++..+|.++..++.........++++|.+++||+++++++.+.|++.++ .++++.
T Consensus       224 ~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~  300 (504)
T PRK07514        224 ASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG-HAILER  300 (504)
T ss_pred             cEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhC-Ccceee
Confidence            999999999999999999  47999999999999999887666677899999999999999999999999987 788887


Q ss_pred             C
Q 019348          342 I  342 (342)
Q Consensus       342 Y  342 (342)
                      |
T Consensus       301 Y  301 (504)
T PRK07514        301 Y  301 (504)
T ss_pred             c
Confidence            7

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.4e-39  Score=269.63  Aligned_cols=298  Identities=25%  Similarity=0.322  Sum_probs=250.5

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.+.+++.++||++|++++  ++.+||+||.++++++|..|++.|+++||+|.+.+||..+|++++||++++|+.+
T Consensus        28 ~~l~d~L~~~A~~~pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~P  105 (542)
T COG1021          28 RTLTDILTDHAARYPDRIAVIDG--ERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP  105 (542)
T ss_pred             CcHHHHHHHHHhhcCCceEEecC--cccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcch
Confidence            79999999999999999999998  8889999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhc----c-CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKD----L-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (342)
                      |.--|.....||.+..+.+.++.+|+++....     ...+    . ..+.+.+.....          .....+..+-.
T Consensus       106 VlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~----------~~~~~~~~~~~  175 (542)
T COG1021         106 VLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAE----------HPSVLEAALCH  175 (542)
T ss_pred             hhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCC----------CcchhhhhhhC
Confidence            99999999999999999999999998754322     1111    1 234555543211          00011111211


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH-HHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~  255 (342)
                      ...  ...+.....++++++.+.+.||||.||.+..||.....+...  ....-.++...+++|.+|..|-+.+.. +++
T Consensus       176 ~a~--~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~a--SaEiC~~~~~tvyL~~LP~AHNfplssPG~L  251 (542)
T COG1021         176 PAG--LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRA--SAEICGFDQQTVYLCALPAAHNFPLSSPGAL  251 (542)
T ss_pred             ccc--cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeee--hhhhhCcCccceEEEecccccCCCCCCcchh
Confidence            111  222345667788999999999999999999999998887554  444555688999999999999887733 489


Q ss_pred             HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      ..+..|+++|+.++.+|...+.+|++++||+..++|.+...|++..+....+++|||.+-+||+.+++.+.++....+| 
T Consensus       252 Gv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg-  330 (542)
T COG1021         252 GVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLG-  330 (542)
T ss_pred             heeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhC-
Confidence            9999999999999999999999999999999999999999999999888899999999999999999999999999998 


Q ss_pred             Cccccc
Q 019348          336 ATIFQK  341 (342)
Q Consensus       336 ~~l~~~  341 (342)
                      +.+.+.
T Consensus       331 C~LQQV  336 (542)
T COG1021         331 CQLQQV  336 (542)
T ss_pred             chHHHH
Confidence            877664

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.7e-38  Score=346.14  Aligned_cols=290  Identities=20%  Similarity=0.278  Sum_probs=246.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++++|+++|+++.  ++.+||+||.++++++|+.|.+.|+++|++|+++++++++++++++||+++|+++
T Consensus      1574 ~~~~~~~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~ 1651 (3956)
T PRK12467       1574 RLVHQLIEDQAAATPEAVALVFG--EQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY 1651 (3956)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCcee
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-CCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      +|++|.++.+++.++++++++++++++......+.... ...+.++..                  ..+.....  ....
T Consensus      1652 vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--~~~~ 1711 (3956)
T PRK12467       1652 VPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQE------------------DDWLEGYS--DSNP 1711 (3956)
T ss_pred             eecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEeccc------------------cchhccCC--CCCC
Confidence            99999999999999999999999999877655443221 222322211                  01111111  1112


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|||||||+||||+++|+++.+.+..  ....+.+..+|++++..|++|..++ ..++.+|..|++++
T Consensus      1712 ~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lv 1788 (3956)
T PRK12467       1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCA--TQEAYQLSAADVVLQFTSFAFDVSV-WELFWPLINGARLV 1788 (3956)
T ss_pred             CCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHH--HHHhcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEE
Confidence            23456789999999999999999999999999988544  4555667789999999999999998 78999999999999


Q ss_pred             EccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.++   .++..+++.|+++++|++.++|++++.|.+... ....+++||.+++|||++++++.++|.+.+++.+++|+|
T Consensus      1789 i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 1867 (3956)
T PRK12467       1789 IAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLY 1867 (3956)
T ss_pred             EcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCc
Confidence            9864   579999999999999999999999999987532 234678999999999999999999999999878899998

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-37  Score=290.41  Aligned_cols=296  Identities=24%  Similarity=0.318  Sum_probs=241.9

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .|+.++|.+.++++|+++|+++.  ++.+||+||.+.+.+++..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   89 (524)
T PRK06188         12 ATYGHLLVSALKRYPDRPALVLG--DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR   89 (524)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEccc-chhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPE-LWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      ++++|..+.+++.++++.++++.+++++. .........     ...+......           .....+.+...... 
T Consensus        90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-  157 (524)
T PRK06188         90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPV-----------PDGVDLLAAAAKFG-  157 (524)
T ss_pred             EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCc-----------cchhhHHHhhhccC-
Confidence            99999999999999999999999999876 333222211     1111111110           00011111111111 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  260 (342)
                       .........++++++|+|||||||.||+|.++|.++...+..  ....+....+|++++..|++|..++  .++.++..
T Consensus       158 -~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~pl~~~~g~--~~~~~l~~  232 (524)
T PRK06188        158 -PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQI--QLAEWEWPADPRFLMCTPLSHAGGA--FFLPTLLR  232 (524)
T ss_pred             -cccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHH--HHhhcCCCcCcEEEEecCchhhhhH--HHHHHHHc
Confidence             111112233456999999999999999999999999987554  4445556788999999999999886  35788999


Q ss_pred             CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (342)
Q Consensus       261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~  340 (342)
                      |+++++.+.+++..+++.++++++|+++++|+++..+++.......+++++|.+++||++++++..+.+.+.++ ..+++
T Consensus       233 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~  311 (524)
T PRK06188        233 GGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQ  311 (524)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhC-chhhh
Confidence            99999999999999999999999999999999999999988766778999999999999999999999999887 77877


Q ss_pred             cC
Q 019348          341 KI  342 (342)
Q Consensus       341 ~Y  342 (342)
                      .|
T Consensus       312 ~Y  313 (524)
T PRK06188        312 YY  313 (524)
T ss_pred             ee
Confidence            76

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.9e-37  Score=288.85  Aligned_cols=311  Identities=27%  Similarity=0.412  Sum_probs=243.5

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++.+|+++|+.+.  ++.+||.||.++++++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus        21 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   98 (541)
T TIGR03205        21 GTLPDLLSKAAADYGPRPALEFR--DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV   98 (541)
T ss_pred             CCHHHHHHHHHHHcCCCceEEEC--CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            48999999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccch--hhhhc---cC-CC-eEEecCCCccccc---cccccccccccHHHHHh
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKD---LN-LP-AVLLGSKDKVSSS---GLISRSSKIVSFHDLIE  176 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~---~~-~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  176 (342)
                      +|++|..+.+++.++++.++++++++++...  ....+   .. .. .+...........   ...........+.+++.
T Consensus        99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (541)
T TIGR03205        99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK  178 (541)
T ss_pred             EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence            9999999999999999999999999985321  11111   01 11 1222211000000   00011122345566554


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh---ccccCCCeEEEEccchhHHHHHHHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ---ELVGELDHVVLCVLPMFHVFGLSVI  253 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~  253 (342)
                      ...  .........+++.++++|||||||.||+|+++|+++...........   .......+++++..|++|.+++...
T Consensus       179 ~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~  256 (541)
T TIGR03205       179 GAA--APAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVI  256 (541)
T ss_pred             cCC--CCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHH
Confidence            322  12222345678999999999999999999999999876532211110   1112345789999999999998777


Q ss_pred             HHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348          254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (342)
Q Consensus       254 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  333 (342)
                      ++.++..|+++++...+++..+++.++++++|++.++|.++..|++.......+++++|.++.||+++++++.+++++.+
T Consensus       257 ~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~  336 (541)
T TIGR03205       257 LLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT  336 (541)
T ss_pred             HHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHh
Confidence            88999999999999889999999999999999999999999999876554556788999999999999999999999888


Q ss_pred             CCCcccccC
Q 019348          334 PGATIFQKI  342 (342)
Q Consensus       334 ~~~~l~~~Y  342 (342)
                      + +++++.|
T Consensus       337 ~-~~~~~~Y  344 (541)
T TIGR03205       337 G-LKLKSGW  344 (541)
T ss_pred             C-CCeeccc
Confidence            7 8888887

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.9e-38  Score=349.20  Aligned_cols=289  Identities=17%  Similarity=0.233  Sum_probs=246.4

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++++||++|+++.  ++++||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus       511 ~~~~~~~~~~a~~~p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~  588 (5163)
T PRK12316        511 RGVHRLFEEQVERTPEAPALAFG--EETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY  588 (5163)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-CCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      +|++|.++.+++.++++.+++++++++......+... ....+.++..                  ........  ....
T Consensus       589 vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--~~~~  648 (5163)
T PRK12316        589 VPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRP------------------AAWLEGYS--EENP  648 (5163)
T ss_pred             eccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCc------------------chhhccCC--CCCC
Confidence            9999999999999999999999999987665443322 1222222211                  00111111  1122


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|||||||.||||+++|+++.+.+..  ....+++..+|++++..|++|..++ ..++.+|..|++++
T Consensus       649 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~  725 (5163)
T PRK12316        649 GTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCW--MQQAYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLV  725 (5163)
T ss_pred             CCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHH--HHHhcCCCCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEE
Confidence            23456789999999999999999999999999988554  4556667889999999999999998 78999999999999


Q ss_pred             Ecc---CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+   .+++..+++.++++++|++.++|++++.|++...  ..++++||.+++||+++++++.++|++.+++++++|.|
T Consensus       726 i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y  803 (5163)
T PRK12316        726 VAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLY  803 (5163)
T ss_pred             ECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCc
Confidence            985   3789999999999999999999999999987642  34688999999999999999999999998889999998

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2.4e-37  Score=287.97  Aligned_cols=304  Identities=22%  Similarity=0.272  Sum_probs=245.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC---CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G  103 (342)
                      .++.++|.+.++++||++|+++.+   +.+.+||.||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus         7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G   86 (517)
T PRK08008          7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG   86 (517)
T ss_pred             ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            589999999999999999998753   23789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC------CCeEEecCCCccccccccccccccccHHHHHhc
Q 019348          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL  177 (342)
Q Consensus       104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (342)
                      +++++++|..+.+++.++++.+++++++++++....+.+..      .+.+.+.....       ........+.+....
T Consensus        87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  159 (517)
T PRK08008         87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVAL-------PADDGVSSFTQLKAQ  159 (517)
T ss_pred             eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCC-------cccccccCHHHHhcc
Confidence            99999999999999999999999999999987766544331      12222221110       111223344444332


Q ss_pred             cCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHH
Q 019348          178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ  257 (342)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~  257 (342)
                      ... .........++++++|+|||||||.||+|++||.++......  .........++++++.+|++|..+....++.+
T Consensus       160 ~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  236 (517)
T PRK08008        160 QPA-TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYY--SAWQCALRDDDVYLTVMPAFHIDCQCTAAMAA  236 (517)
T ss_pred             CCc-cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHH--HhhhcCCCCCCeEEEecCcHHHHHHHHHHHHH
Confidence            211 111123345689999999999999999999999999865322  22233356789999999999988876788999


Q ss_pred             hhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348          258 LQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (342)
Q Consensus       258 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~  337 (342)
                      +..|+++++.+++++..+++.++++++|++.++|.+++.+............+++.+.+++ ++++...++|.+.++ ++
T Consensus       237 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~  314 (517)
T PRK08008        237 FSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERFG-VR  314 (517)
T ss_pred             HhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHhC-Ce
Confidence            9999999999999999999999999999999999999999877654444556788877764 789999999999987 89


Q ss_pred             ccccC
Q 019348          338 IFQKI  342 (342)
Q Consensus       338 l~~~Y  342 (342)
                      +++.|
T Consensus       315 ~~~~Y  319 (517)
T PRK08008        315 LLTSY  319 (517)
T ss_pred             EEeec
Confidence            99887

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=6.7e-38  Score=290.79  Aligned_cols=288  Identities=18%  Similarity=0.264  Sum_probs=241.3

Q ss_pred             CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  107 (342)
                      ++.+.+.+.+..+|+++|+.+.  ++.+||+||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v   78 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYI   78 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            5778999999999999999887  78999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCC
Q 019348          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV  187 (342)
Q Consensus       108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (342)
                      |+++.++.+++.++++..+++.++++++........  ..+.+.                  ..........  ......
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~--~~~~~~------------------~~~~~~~~~~--~~~~~~  136 (502)
T TIGR01734        79 PVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGT--QIITLS------------------ALEQAETSGG--PVSFDH  136 (502)
T ss_pred             CCCCcChHHHHHHHHHhcCCCEEEecccccccccCC--ceEEch------------------HhhhhhhhcC--Cccccc
Confidence            999999999999999999999999987654332211  111111                  0111111111  111112


Q ss_pred             CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM  267 (342)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~  267 (342)
                      ...+++.++++|||||||.||+|.++|.++...+..  ....+....++++++..|++|..++ ..++.++..|+++++.
T Consensus       137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~  213 (502)
T TIGR01734       137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNW--MLADFPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCL  213 (502)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHH--HHHhCCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEc
Confidence            345688999999999999999999999999887554  3344556788999999999999988 7889999999999998


Q ss_pred             cC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          268 GK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       268 ~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++   .++..+++.++++++|.+.++|.+++.++.........+++++.++++|+++++++.+.+.+.++++++++.|
T Consensus       214 ~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~y  291 (502)
T TIGR01734       214 DKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTY  291 (502)
T ss_pred             CHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCc
Confidence            65   5789999999999999999999999988776555566789999999999999999999999999889999887

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.2e-37  Score=288.75  Aligned_cols=317  Identities=23%  Similarity=0.366  Sum_probs=247.0

Q ss_pred             CCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348           22 PSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (342)
Q Consensus        22 ~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~  101 (342)
                      +..++.++.++|.+.++++|+++|+++.  ++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||++
T Consensus        18 ~~~~~~~i~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~   95 (557)
T PRK07059         18 DASQYPSLADLLEESFRQYADRPAFICM--GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLR   95 (557)
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCceEEEc--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            4444478999999999999999999987  78999999999999999999999999999999999999999999999999


Q ss_pred             hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCccccc---------------ccc
Q 019348          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSS---------------GLI  162 (342)
Q Consensus       102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------------~~~  162 (342)
                      +|++++|++|..+.+++.++++.++++++++++.....+...    ..+.+.+.........               ...
T Consensus        96 ~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (557)
T PRK07059         96 AGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPA  175 (557)
T ss_pred             cCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccc
Confidence            999999999999999999999999999999987765544322    1122222111000000               000


Q ss_pred             ccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh--cccc---CCCeE
Q 019348          163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVG---ELDHV  237 (342)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~---~~~d~  237 (342)
                      ....+...+.+.+..... .........++++++|+|||||||.||+|+++|.+++.++.......  .+..   .....
T Consensus       176 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  254 (557)
T PRK07059        176 WSLPGHVRFNDALAEGAR-QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN  254 (557)
T ss_pred             cCCCCcccHHHHhhccCC-CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence            011223344544433221 12223345678999999999999999999999999987643321111  1111   13457


Q ss_pred             EEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEe
Q 019348          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS  316 (342)
Q Consensus       238 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~  316 (342)
                      +++..|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+..+|.+++.+.........+++++|.++.
T Consensus       255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~  334 (557)
T PRK07059        255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG  334 (557)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence            8889999999998667788888998877664 458999999999999999999999999999887666677889999999


Q ss_pred             ecccCCHHHHHHHHHhCCCCcccccC
Q 019348          317 GAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       317 gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ||+++++.+.++|++.++ +++++.|
T Consensus       335 gg~~~~~~~~~~~~~~~~-~~~~~~Y  359 (557)
T PRK07059        335 GGMAVQRPVAERWLEMTG-CPITEGY  359 (557)
T ss_pred             ccccCCHHHHHHHHHHhC-CCeeecc
Confidence            999999999999999887 8999887

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-37  Score=290.86  Aligned_cols=310  Identities=30%  Similarity=0.470  Sum_probs=240.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.+.+.+..+|+++|+++.  ++.+||+||.+++.++|++|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~  101 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFL--GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIV  101 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEec--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEE
Confidence            47999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCcccccc--------------c---cccc
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSG--------------L---ISRS  165 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------------~---~~~~  165 (342)
                      +|++|..+.+++.++++.++++++++++..........    ...+.+..........              .   ....
T Consensus       102 vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (563)
T PRK06710        102 VQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSES  181 (563)
T ss_pred             eccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhccccccccccccc
Confidence            99999999999999999999999999876544332211    1111111100000000              0   0000


Q ss_pred             cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc-CCCeEEEEccch
Q 019348          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM  244 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~~~~~p~  244 (342)
                      .....|........  ..........++.++++|||||||.||+|.++|+++...+... ....... ..++++++..|+
T Consensus       182 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~p~  258 (563)
T PRK06710        182 ETIHLWNSVEKEVN--TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMG-VQWLYNCKEGEEVVLGVLPF  258 (563)
T ss_pred             chhhhhhhhhhccc--cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHH-HhhccCCCCCCceEEEeCch
Confidence            00011222111111  1111112235789999999999999999999999997553221 1112222 345688999999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHH
Q 019348          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE  324 (342)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~  324 (342)
                      +|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..++........+++++|.+++||++++++
T Consensus       259 ~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~  338 (563)
T PRK06710        259 FHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVE  338 (563)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHH
Confidence            99999866677899999999999889999999999999999999999999999987655566788999999999999999


Q ss_pred             HHHHHHHhCCCCcccccC
Q 019348          325 LMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       325 ~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+++++.++ +++++.|
T Consensus       339 ~~~~~~~~~~-~~~~~~Y  355 (563)
T PRK06710        339 VQEKFETVTG-GKLVEGY  355 (563)
T ss_pred             HHHHHHHhhC-CCEeccc
Confidence            9999999886 8898887

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-37  Score=295.93  Aligned_cols=306  Identities=20%  Similarity=0.221  Sum_probs=234.6

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCC---CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G  103 (342)
                      .|+.+.+.++  .+|+++|+++.+.   .+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus        86 ~n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~G  163 (655)
T PRK03584         86 LNYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLG  163 (655)
T ss_pred             eeHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            5777776653  5799999997532   2689999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hhh----ccC-C-CeEEecCCCcccccccccccccc
Q 019348          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVK----DLN-L-PAVLLGSKDKVSSSGLISRSSKI  168 (342)
Q Consensus       104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
                      ++++|++|.++.+++.++++.++++++|+++....         .+.    ... . ..+.+......   .........
T Consensus       164 av~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~  240 (655)
T PRK03584        164 AIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPA---AAAAALPGA  240 (655)
T ss_pred             cEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCc---ccccccCCc
Confidence            99999999999999999999999999999865321         111    111 1 12222211100   000112223


Q ss_pred             ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHH-hhhhhhhhccccCCCeEEEEccchhHH
Q 019348          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMISAHQELVGELDHVVLCVLPMFHV  247 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~d~~~~~~p~~~~  247 (342)
                      ..|.+++..... ..........+++++|+|||||||.||||++||++++.. ...  ....+.+..+|++++..++.|+
T Consensus       241 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~  317 (655)
T PRK03584        241 LLWEDFLAPAEA-AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKE--LGLHCDLGPGDRFFWYTTCGWM  317 (655)
T ss_pred             ccHHHHhhcccc-CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHH--HHHhcCCCCCCEEEEcCCchHH
Confidence            456666542211 122223456789999999999999999999999987543 222  3334556788999999999887


Q ss_pred             HHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccC
Q 019348          248 FGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPL  321 (342)
Q Consensus       248 ~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l  321 (342)
                      .+  ..++.+|..|+++++.+.    .++..+++.++++++|++.++|++++.+.+...  ....++++||.+++||+++
T Consensus       318 ~~--~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l  395 (655)
T PRK03584        318 MW--NWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPL  395 (655)
T ss_pred             hH--HHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCC
Confidence            54  346789999999999752    589999999999999999999999999876532  2346789999999999999


Q ss_pred             CHHHHHHHHHhCC-CCcccccC
Q 019348          322 GKELMEDCQKNIP-GATIFQKI  342 (342)
Q Consensus       322 ~~~~~~~~~~~~~-~~~l~~~Y  342 (342)
                      ++++.+++++.++ ++.+++.|
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~y  417 (655)
T PRK03584        396 PPEGFDWVYEHVKADVWLASIS  417 (655)
T ss_pred             CHHHHHHHHHHhCCCceEEecc
Confidence            9999999999984 57777766

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-37  Score=286.80  Aligned_cols=292  Identities=16%  Similarity=0.172  Sum_probs=236.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .++.++|.+.+.  ++++++++.  ++.+||.||.+++.++|++|++. |++++++|+++++|+++++++++||+++|++
T Consensus         5 ~~~~~~l~~~a~--~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~   80 (529)
T PRK07867          5 PTVAELLLPLAE--DDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIV   80 (529)
T ss_pred             ccHHHHHHHhcc--cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            578999988775  789999987  78999999999999999999987 8999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      ++|+++..+.+++.++++.+++++++++++....+.........+...              ...+.+++..... ....
T Consensus        81 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~-~~~~  145 (529)
T PRK07867         81 PVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVD--------------SPAWADELAAHRD-AEPP  145 (529)
T ss_pred             EEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEec--------------cccHHHHhcccCC-CCCC
Confidence            999999999999999999999999999987766554432111111111              0123443332210 1112


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|||||||.||+|+++|+++...+..  ....+....+|++++..|++|.+++...++.++..|++++
T Consensus       146 ~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  223 (529)
T PRK07867        146 FRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVM--LAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIA  223 (529)
T ss_pred             cccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHH--HHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence            23456789999999999999999999999999877554  3444556788999999999999998777888999999999


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+++++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++. .++|++.+| +++++.|
T Consensus       224 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~-~~~~~~~~g-~~l~~~Y  297 (529)
T PRK07867        224 LRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGD-IARFARRFG-CVVVDGF  297 (529)
T ss_pred             ecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHH-HHHHHHHhC-CcEEEee
Confidence            999999999999999999999999999999988766433333467884 5688888776 467888886 8999887

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.8e-37  Score=313.95  Aligned_cols=303  Identities=22%  Similarity=0.322  Sum_probs=246.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.+.+.++++||++|+++. .++++||+||.++++++|+.|++ ++++||+|+++++|+++++++++||+++|+++
T Consensus       615 ~~l~~~~~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~  692 (1146)
T PRK08633        615 PPLAEAWIDTAKRNWSRLAVADS-TGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVP  692 (1146)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEE
Confidence            68999999999999999999975 25799999999999999999987 58999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc------C--CCeEEecCCCccccccccccccccccHHHHHhcc
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------N--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (342)
                      +|++|..+.+++.++++++++++++++++..+.+...      .  ...+..+...        ........+.+.....
T Consensus       693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  764 (1146)
T PRK08633        693 VNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK--------AKISKVDKLTALLAAR  764 (1146)
T ss_pred             EEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc--------cccchhHHHHHHHHhc
Confidence            9999999999999999999999999998766655421      1  1111111100        0001111122221111


Q ss_pred             CCCC----CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHH
Q 019348          179 GSVT----DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL  254 (342)
Q Consensus       179 ~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~  254 (342)
                      ....    ........++++++++|||||||.||+|.+||+++...+..  ....+...++|++++.+|++|.+|+...+
T Consensus       765 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~g~~~~~  842 (1146)
T PRK08633        765 LLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQ--ISDVFNLRNDDVILSSLPFFHSFGLTVTL  842 (1146)
T ss_pred             cCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHH--HHHhcCCCCCCEEEEcCcHHHHHhHHHHH
Confidence            0000    00013456789999999999999999999999999987554  34445567889999999999999996668


Q ss_pred             HHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348          255 YDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (342)
Q Consensus       255 ~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  333 (342)
                      +.++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++||+++++++.+++++.+
T Consensus       843 ~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~  922 (1146)
T PRK08633        843 WLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF  922 (1146)
T ss_pred             HHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh
Confidence            99999999999875 57999999999999999999999999999987666667889999999999999999999999999


Q ss_pred             CCCcccccC
Q 019348          334 PGATIFQKI  342 (342)
Q Consensus       334 ~~~~l~~~Y  342 (342)
                      + +++++.|
T Consensus       923 g-~~~~~~Y  930 (1146)
T PRK08633        923 G-IRILEGY  930 (1146)
T ss_pred             C-CCeeccc
Confidence            7 8999888

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-37  Score=344.73  Aligned_cols=289  Identities=18%  Similarity=0.245  Sum_probs=244.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.|.+.++++|+++|+++.  ++.+||+||.++++++|+.|.+.|+++|++|+|+++|+.+++++++||+++|+++
T Consensus      2003 ~~~~~~~~~~a~~~p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~ 2080 (5163)
T PRK12316       2003 PGVHQRIAEQAARAPEAIAVVFG--DQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAY 2080 (5163)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEE
Confidence            58999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-CCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      +|++|.++.+++.++++++++++++++++....+.... ...+.++..                  .... ...  ....
T Consensus      2081 vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-~~~--~~~~ 2139 (5163)
T PRK12316       2081 VPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRD------------------AEWA-DYP--DTAP 2139 (5163)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccch------------------hhhh-ccC--ccCC
Confidence            99999999999999999999999999887655432211 112211110                  0000 000  1112


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|||||||.||||+++|+++.+.+..  ....+..+++|+++.+.|++|..++ ..++.+|..|++++
T Consensus      2140 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~~~ 2216 (5163)
T PRK12316       2140 AVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQA--AGERYELSPADCELQFMSFSFDGAH-EQWFHPLLNGARVL 2216 (5163)
T ss_pred             CCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHH--HHHhcCCCCcceEEEecCchHHHHH-HHHHHHHhCCCEEE
Confidence            23456789999999999999999999999999988554  4455667889999999999999887 88999999999998


Q ss_pred             EccC--CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~--~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++.  +++..+++.++++++|++.++|++++.|........ ..++||.+++||+++++++.++|.+.+++.+++++|
T Consensus      2217 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 2294 (5163)
T PRK12316       2217 IRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGY 2294 (5163)
T ss_pred             eCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECc
Confidence            8753  689999999999999999999999999987653322 345899999999999999999999998888999998

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.9e-37  Score=288.31  Aligned_cols=295  Identities=23%  Similarity=0.271  Sum_probs=240.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++  ||++|+++.  ++.+||+||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus        25 ~~~~~~~~~~a~--p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~  100 (536)
T PRK10946         25 LPLTDILTRHAA--SDAIAVICG--ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP  100 (536)
T ss_pred             ccHHHHHHHhhC--CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence            589999988887  999999987  7899999999999999999999999999999999999999999999999999998


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccch--------hhhhcc--CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (342)
                      +++.+.....++.++++.+++++++++++..        ..+...  ....+.....            .....+.....
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~  168 (536)
T PRK10946        101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND------------DGEHSLDDAIN  168 (536)
T ss_pred             ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC------------CCCccHHHHhh
Confidence            8888888888999999999999999986531        111111  1112222111            11123333333


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH-HHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~  255 (342)
                      ...  .........++++++++|||||||.||+|++||+++...+..  ....+....+|++++.+|++|.+++.. .++
T Consensus       169 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~  244 (536)
T PRK10946        169 HPA--EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRR--SVEICGFTPQTRYLCALPAAHNYPMSSPGAL  244 (536)
T ss_pred             Ccc--cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHH--HHHhcCCCCCceEEEecCccccccchhhhHH
Confidence            222  112223446789999999999999999999999999988654  344555678899999999999988743 578


Q ss_pred             HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCC--CCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (342)
Q Consensus       256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~--~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  333 (342)
                      .++..|+++++.+.+++..+++.++++++|++.++|.+++.++...  ......++++|.+++||+++++.+.++|.+.+
T Consensus       245 ~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~  324 (536)
T PRK10946        245 GVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL  324 (536)
T ss_pred             HHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc
Confidence            8999999999999899999999999999999999999999998762  23345678999999999999999999999999


Q ss_pred             CCCcccccC
Q 019348          334 PGATIFQKI  342 (342)
Q Consensus       334 ~~~~l~~~Y  342 (342)
                      + +++++.|
T Consensus       325 g-~~~~~~Y  332 (536)
T PRK10946        325 G-CQLQQVF  332 (536)
T ss_pred             C-CeEEEee
Confidence            7 8999887

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-36  Score=286.16  Aligned_cols=327  Identities=21%  Similarity=0.318  Sum_probs=248.0

Q ss_pred             CceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Q 019348            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN   88 (342)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n   88 (342)
                      +.+|...-+..+.-.....++.+.|.+.++.+||++|+.+.  ++.+||.||.+++.++|..|.+.|+++|++|+++++|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n   92 (567)
T PRK06178         15 QAAWPAGIPREPEYPHGERPLTEYLRAWARERPQRPAIIFY--GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPN   92 (567)
T ss_pred             HhhCCcCCCCCCCCCcCcccHHHHHHHHHHHCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence            34444444443332222368999999999999999999987  7899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecC-CCccccccc--
Q 019348           89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGS-KDKVSSSGL--  161 (342)
Q Consensus        89 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~--  161 (342)
                      +.+++++++||+++|++++|++|..+..++.++++.++++++++++...+.+....    ...+.+.. .........  
T Consensus        93 ~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~  172 (567)
T PRK06178         93 CPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLP  172 (567)
T ss_pred             CcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccc
Confidence            99999999999999999999999999999999999999999999988766554332    12222111 100000000  


Q ss_pred             cc-----cccccccHHHHHhccCC-CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCC
Q 019348          162 IS-----RSSKIVSFHDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD  235 (342)
Q Consensus       162 ~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~  235 (342)
                      ..     .......+.++...... ..........++++++|+|||||||.||+|++||.++.......... .....++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~-~~~~~~~  251 (567)
T PRK06178        173 LPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAV-AVVGGED  251 (567)
T ss_pred             cccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHH-hccCCCC
Confidence            00     00000111122211110 01112233567899999999999999999999999988764332111 2345688


Q ss_pred             eEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEE
Q 019348          236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG  315 (342)
Q Consensus       236 d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~  315 (342)
                      |++++.+|++|.+|+...++.++..|+++++.+++++..+++.++++++|.+.++|..+..+.......+.++++++.+.
T Consensus       252 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~  331 (567)
T PRK06178        252 SVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVR  331 (567)
T ss_pred             cEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeee
Confidence            99999999999999867789999999999999999999999999999999999999999999887655666778888765


Q ss_pred             e--ecccCCHHHHHHHHHhCCCCccc
Q 019348          316 S--GAAPLGKELMEDCQKNIPGATIF  339 (342)
Q Consensus       316 ~--gG~~l~~~~~~~~~~~~~~~~l~  339 (342)
                      .  +|++++++..+.|++.+| ..++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~g-~~~~  356 (567)
T PRK06178        332 VVSFVKKLNPDYRQRWRALTG-SVLA  356 (567)
T ss_pred             eccccccCCHHHHHHHHHHhC-Cccc
Confidence            4  458999999999999987 4444

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=7.3e-37  Score=287.42  Aligned_cols=307  Identities=16%  Similarity=0.239  Sum_probs=236.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .|+..++.+.+..+|+++|+++.  ++++||+||.++++++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~   97 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG--SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVV   97 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEE
Confidence            57899999999999999999986  6799999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc------------CCCeEEecCCCcccccc-ccccccccccHHH
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------------NLPAVLLGSKDKVSSSG-LISRSSKIVSFHD  173 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  173 (342)
                      +|+++..+.+++.++++.+++++++++++..+...+.            ..+.++........... ......+...+.+
T Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (567)
T PLN02479         98 NCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEK  177 (567)
T ss_pred             EEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHH
Confidence            9999999999999999999999999987765432211            11112221111100000 0001123445666


Q ss_pred             HHhccCCCCCCC-CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348          174 LIELSGSVTDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (342)
Q Consensus       174 ~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  252 (342)
                      ++....  .... ......++.++++|||||||.||+|++||+++...+..  ....+....++++++..|++|.+++..
T Consensus       178 ~~~~~~--~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~h~~~~~~  253 (567)
T PLN02479        178 FLETGD--PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALS--NALIWGMNEGAVYLWTLPMFHCNGWCF  253 (567)
T ss_pred             HHhccc--cccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHH--HHhhcCCCCCCEEEEecchhhhhhHHH
Confidence            654432  1111 11223346778999999999999999999998765333  333445678899999999999999844


Q ss_pred             HHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc-cCCCCceEEEeecccCCHHHHHHHHH
Q 019348          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK-FDISSLKLVGSGAAPLGKELMEDCQK  331 (342)
Q Consensus       253 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-~~l~~lr~~~~gG~~l~~~~~~~~~~  331 (342)
                      .+...+..|.+++ ...+++..+++.++++++|++.++|.+++.|.+...... .++++++.++++|+++++.+.++|.+
T Consensus       254 ~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~  332 (567)
T PLN02479        254 TWTLAALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSE  332 (567)
T ss_pred             HHHHHhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHh
Confidence            4445566666555 456899999999999999999999999999987654333 25789999999999999999999987


Q ss_pred             hCCCCcccccC
Q 019348          332 NIPGATIFQKI  342 (342)
Q Consensus       332 ~~~~~~l~~~Y  342 (342)
                      .  +.++++.|
T Consensus       333 ~--~~~~~~~y  341 (567)
T PLN02479        333 K--GFRVTHTY  341 (567)
T ss_pred             c--CCceeccc
Confidence            6  47888877

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.4e-37  Score=319.20  Aligned_cols=304  Identities=17%  Similarity=0.189  Sum_probs=237.9

Q ss_pred             CCHHHHHhhhcccCCCceEEEeC-------CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDA-------DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~-------~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      .++.++|.++++++||++|+++.       +.++++||+||.++++++|++|.+.|+++|++|+|+++|+++++++++||
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~  315 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV  315 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence            47999999999999999999863       23579999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch---hhhhcc---------CCCeEEecCCCccccccccccccc
Q 019348          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---DKVKDL---------NLPAVLLGSKDKVSSSGLISRSSK  167 (342)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  167 (342)
                      +++|++++|++|..+.+++.++++.+++++++++.+..   ..+...         ..+.+.+.......     .....
T Consensus       316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  390 (1389)
T TIGR03443       316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV-----GGSLE  390 (1389)
T ss_pred             HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc-----ccccc
Confidence            99999999999999999999999999999999875421   111110         01111111100000     00000


Q ss_pred             cccHHHHHhccCC-CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348          168 IVSFHDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (342)
Q Consensus       168 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~  246 (342)
                       ....+....... ..........++++++|+|||||||.||||+++|+++.+.+..  ....+.+..+|+++...|++|
T Consensus       391 -~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~~~~~~~~~  467 (1389)
T TIGR03443       391 -GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPW--MAKRFGLSENDKFTMLSGIAH  467 (1389)
T ss_pred             -cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHH--HHHhcCCCCCCEEEEecCcee
Confidence             000000000000 0011112345789999999999999999999999999987544  444556678899999999999


Q ss_pred             HHHHHHHHHHHhhcCCeEEEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCH
Q 019348          247 VFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (342)
Q Consensus       247 ~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~  323 (342)
                      ..++ ..++.+|..|+++++++.   .++..+++.++++++|+++++|++++.|....   ...+++||.+++||+++++
T Consensus       468 d~~~-~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~  543 (1389)
T TIGR03443       468 DPIQ-RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTK  543 (1389)
T ss_pred             cchH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCH
Confidence            9887 789999999999999864   36889999999999999999999999987543   3458899999999999999


Q ss_pred             HHHHHHHHhCCCCcccccC
Q 019348          324 ELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       324 ~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ...+++++.++++++++.|
T Consensus       544 ~~~~~~~~~~~~~~l~n~Y  562 (1389)
T TIGR03443       544 RDCLRLQTLAENVCIVNMY  562 (1389)
T ss_pred             HHHHHHHHhCCCCEEEECc
Confidence            9999999988889999988

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.1e-36  Score=282.85  Aligned_cols=298  Identities=26%  Similarity=0.384  Sum_probs=241.0

Q ss_pred             HHHHHhhh-cccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348           29 MVHFLFRN-SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (342)
Q Consensus        29 l~~~l~~~-~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  107 (342)
                      -.+.+.++ ++.+||++|+++.  ++.+||.||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus         6 ~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v   83 (508)
T TIGR02262         6 AEDLLDRNVVEGRGGKTAFIDD--ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPV   83 (508)
T ss_pred             HHHHHHHHHhcccCCceEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence            34556665 5779999999986  78999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (342)
Q Consensus       108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (342)
                      |+++..+.+++.++++.+++++++++++..+.+.+..     ...+.....          .......+.++.....  .
T Consensus        84 ~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~  151 (508)
T TIGR02262        84 ALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGR----------PEAGEVQLAELLATES--E  151 (508)
T ss_pred             eccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCC----------CCcccccHHHHhhcCC--C
Confidence            9999999999999999999999999987665543321     111111111          0111223444433222  1


Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCC
Q 019348          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (342)
Q Consensus       183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (342)
                      ........++++++++|||||||.||+|.++|+++...+... ....+....+|+++...|++|.+++...++.++..|+
T Consensus       152 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~-~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~  230 (508)
T TIGR02262       152 QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELY-ARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGA  230 (508)
T ss_pred             ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHH-hHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCc
Confidence            222234457899999999999999999999999998765432 1233456788999999999999998677888999999


Q ss_pred             eEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348          263 CVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK  341 (342)
Q Consensus       263 ~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  341 (342)
                      ++++.+ .+++..+++.++++++|.+.++|.++..++...........++|.+++||+++++++.+.|++.|+ +++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~v~~~  309 (508)
T TIGR02262       231 TTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFG-VDIVDG  309 (508)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhC-CchhhC
Confidence            998875 468999999999999999999999999888766544456779999999999999999999999997 889988


Q ss_pred             C
Q 019348          342 I  342 (342)
Q Consensus       342 Y  342 (342)
                      |
T Consensus       310 Y  310 (508)
T TIGR02262       310 I  310 (508)
T ss_pred             c
Confidence            7

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-36  Score=285.52  Aligned_cols=312  Identities=23%  Similarity=0.373  Sum_probs=241.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .++.+.|.+.++++|+++|+++.  ++.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v  101 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLI  101 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            68999999999999999999976  78999999999999999999885 9999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCc-cc--------------ccc-ccccc
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDK-VS--------------SSG-LISRS  165 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~-~~--------------~~~-~~~~~  165 (342)
                      ++++++..+.+++.++++.++++++++++.........    ....+....... ..              ... .....
T Consensus       102 ~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK12492        102 VVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHL  181 (562)
T ss_pred             EeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCC
Confidence            99999999999999999999999999987554333211    011111000000 00              000 00001


Q ss_pred             cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhc-cc------cC-CCeE
Q 019348          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LV------GE-LDHV  237 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~------~~-~~d~  237 (342)
                      .....|++....... ..........+++++|+|||||||.||+|+++|+++...+........ ..      .. .+++
T Consensus       182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (562)
T PRK12492        182 PQAVPFKQALRQGRG-LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEV  260 (562)
T ss_pred             cccccHHHHHhccCC-CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeE
Confidence            122345555433221 111123445689999999999999999999999999776443221111 10      12 2467


Q ss_pred             EEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEe
Q 019348          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS  316 (342)
Q Consensus       238 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~  316 (342)
                      +++.+|++|.+++...++..+..|+++++. +.+++..+++.++++++|++..+|.++..+.+.......+++++|.+++
T Consensus       261 ~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~  340 (562)
T PRK12492        261 MIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNS  340 (562)
T ss_pred             EEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEe
Confidence            889999999999866677888899887765 4568999999999999999999999999999887666677899999999


Q ss_pred             ecccCCHHHHHHHHHhCCCCcccccC
Q 019348          317 GAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       317 gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ||+++++.+.++|++.++ +++++.|
T Consensus       341 gG~~~~~~~~~~~~~~~~-~~~~~~Y  365 (562)
T PRK12492        341 GGTALVKATAERWEQLTG-CTIVEGY  365 (562)
T ss_pred             ccccCCHHHHHHHHHHhC-Cceeecc
Confidence            999999999999999887 8999887

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5e-37  Score=283.87  Aligned_cols=279  Identities=19%  Similarity=0.302  Sum_probs=228.7

Q ss_pred             hhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCC
Q 019348           35 RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT  114 (342)
Q Consensus        35 ~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~  114 (342)
                      .+++.+||++|+.+...++.+||.||.+.+.++|..|.+.|+.+||+|+++++|+++++++++||+++|++++|+++..+
T Consensus         3 ~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~   82 (488)
T PRK09088          3 FHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLS   82 (488)
T ss_pred             hhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCC
Confidence            45678999999987544789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCe
Q 019348          115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA  194 (342)
Q Consensus       115 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (342)
                      .+++.++++.++++++++++.......    ..                     ..++++.................+++
T Consensus        83 ~~~~~~~~~~~~~~~ii~~~~~~~~~~----~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (488)
T PRK09088         83 ASELDALLQDAEPRLLLGDDAVAAGRT----DV---------------------EDLAAFIASADALEPADTPSIPPERV  137 (488)
T ss_pred             HHHHHHHHHhCCCCEEEEcchhhcccc----cc---------------------cchhhhhhhccccccccCCCCCCCCc
Confidence            999999999999999999865432100    00                     01111111100001111123356789


Q ss_pred             EEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHH
Q 019348          195 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM  274 (342)
Q Consensus       195 ~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~  274 (342)
                      ++++|||||||.||+|.++|+++...+...  ........+|++++..|++|.+++...++.++..|+++++.+.+++..
T Consensus       138 ~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~  215 (488)
T PRK09088        138 SLILFTSGTSGQPKGVMLSERNLQQTAHNF--GVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKR  215 (488)
T ss_pred             eEEEeCCCCCCCCcEEEEehHHHHHHHHHH--HHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHH
Confidence            999999999999999999999998775442  333345678999999999999999777889999999999998899999


Q ss_pred             HHHHHH--hccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          275 ALRAIE--KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       275 ~~~~i~--~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++..+.  ++++|.++++|++++.+..........++++|.+++||++++....+++++.  ++++++.|
T Consensus       216 ~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~Y  283 (488)
T PRK09088        216 TLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGF  283 (488)
T ss_pred             HHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeee
Confidence            999886  4899999999999999988765555678899999999999999999988876  48888877

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.6e-37  Score=341.13  Aligned_cols=287  Identities=16%  Similarity=0.223  Sum_probs=243.8

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.++++++||++|+++.  +..+||+||.++++++|+.|.+.|+++|++|+|+++++.+++++++|++++|+++
T Consensus      3720 ~~~~~~~~~~~~~~p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~ 3797 (4334)
T PRK05691       3720 QSYVRLFEAQVAAHPQRIAASCL--DQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGY 3797 (4334)
T ss_pred             cCHHHHHHHHHHhCCCceEEEcC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEE
Confidence            58999999999999999999998  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-------CCeEEecCCCccccccccccccccccHHHHHhccC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (342)
                      +||+|.++.+++.++++++++++++++...........       .+.+.+.                    .+......
T Consensus      3798 vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 3857 (4334)
T PRK05691       3798 LPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVW--------------------EEVQAGEV 3857 (4334)
T ss_pred             eCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeee--------------------cccccccc
Confidence            99999999999999999999999999877554322211       0111110                    00000000


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                      . .........+++.+||+|||||||.||||+++|+++.+.+..  ....+.++++|+++...+++|..+. ..++.+|.
T Consensus      3858 ~-~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~fd~s~-~~~~~~l~ 3933 (4334)
T PRK05691       3858 A-SHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLS--KVPYLALSEADVIAQTASQSFDISV-WQFLAAPL 3933 (4334)
T ss_pred             c-ccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHH--HHHhcCCCccceEEEecCCchhHHH-HHHHHHHh
Confidence            0 111223456789999999999999999999999999998544  5556677899999999999999998 88999999


Q ss_pred             cCCeEEEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCC
Q 019348          260 KGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (342)
Q Consensus       260 ~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~  336 (342)
                      .|+++++++.   .++..+++.++++++|++.++|++++.++...   ...+++||.+++|||++++++.++|++.++++
T Consensus      3934 ~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~ 4010 (4334)
T PRK05691       3934 FGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQI 4010 (4334)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCC
Confidence            9999999864   57899999999999999999999999887643   34578999999999999999999999999889


Q ss_pred             cccccC
Q 019348          337 TIFQKI  342 (342)
Q Consensus       337 ~l~~~Y  342 (342)
                      +++|.|
T Consensus      4011 ~l~n~Y 4016 (4334)
T PRK05691       4011 GLVNAY 4016 (4334)
T ss_pred             eEEeCc
Confidence            999998

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=8.5e-37  Score=283.48  Aligned_cols=289  Identities=18%  Similarity=0.257  Sum_probs=240.4

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      +++.+.+.+.++.+|+++++.+.  ++++||.||.+.+.++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~   79 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL--GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAY   79 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            57889999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|+++..+.+++.++++..++++++++.+....  ......+..                  ..+.+......  .....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~~~~~~~~~~~--~~~~~  137 (503)
T PRK04813         80 IPVDVSSPAERIEMIIEVAKPSLIIATEELPLE--ILGIPVITL------------------DELKDIFATGN--PYDFD  137 (503)
T ss_pred             ecCCCCChHHHHHHHHHhcCCCEEEeccccccc--ccCCcEEeh------------------HHhhhhhhccc--ccccc
Confidence            999999999999999999999999998765111  000111100                  01111111011  11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....+++.++++|||||||.||+|.++|+++...+..  ....+....++++++..|++|..++ ..++.++..|+++++
T Consensus       138 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~  214 (503)
T PRK04813        138 HAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNW--MLEDFALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVA  214 (503)
T ss_pred             ccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHH--HHHHcCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEE
Confidence            2346688999999999999999999999999987544  3344556788999999999999988 778899999999999


Q ss_pred             ccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .++   .++..+++.++++++|++..+|.+++.+.........+++++|.++++|+++++.+.+++++.|+++.+++.|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~y  293 (503)
T PRK04813        215 LPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTY  293 (503)
T ss_pred             cChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCc
Confidence            875   5889999999999999999999999887766555566789999999999999999999999999878899887

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-37  Score=294.52  Aligned_cols=289  Identities=22%  Similarity=0.315  Sum_probs=227.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC-------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      .|+.++|.+.++.+|+++|+++.+       ..+.+||+||.++++++|+.|.+. +++||+|+++++|+++++++++||
T Consensus        21 ~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~   99 (631)
T PRK07769         21 TNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGA   99 (631)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHH
Confidence            799999999999999999998642       126899999999999999999886 899999999999999999999999


Q ss_pred             HHhCCeEecc-CCCCC--HHHHHHHhhhcCceEEEEcccchhhhhcc----C----CCeEEecCCCcccccccccccccc
Q 019348          100 IAIGAIASTA-NPVYT--VSELSKQVKDSNPKLVITVPELWDKVKDL----N----LPAVLLGSKDKVSSSGLISRSSKI  168 (342)
Q Consensus       100 ~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
                      +++|++++|+ ++..+  .+++.++++.++++++|++++....+...    .    ...+.++..               
T Consensus       100 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  164 (631)
T PRK07769        100 LYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAV---------------  164 (631)
T ss_pred             HHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccc---------------
Confidence            9999999999 45554  67899999999999999987765443221    0    011111100               


Q ss_pred             ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF  248 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  248 (342)
                         .+..   .  .........++++++|+|||||||.||||++||+++...+..  ....+....+|++++.+|++|.+
T Consensus       165 ---~~~~---~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~Pl~h~~  234 (631)
T PRK07769        165 ---PDEV---G--ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQ--VIDALEGQEGDRGVSWLPFFHDM  234 (631)
T ss_pred             ---cccc---c--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHH--HHHHcCCCCcceEEEeCCCcCch
Confidence               0000   0  011112345689999999999999999999999999887544  33455567889999999999999


Q ss_pred             HHHHHHHHHhhcCCeEEEccC--C--CHHHHHHHHHhccc---eEEEecHHHHHHHHcC---CC--CCccCCCCceEEEe
Q 019348          249 GLSVILYDQLQKGNCVVSMGK--F--DIEMALRAIEKYRV---TVWWVVPPIILALAKN---SL--VRKFDISSLKLVGS  316 (342)
Q Consensus       249 g~~~~~~~~l~~G~~~v~~~~--~--~~~~~~~~i~~~~~---t~~~~~P~~l~~l~~~---~~--~~~~~l~~lr~~~~  316 (342)
                      |+ ..++.++..|+++++.++  +  ++..+++.++++++   +.+..+|.++..+...   ..  ....++++||.+++
T Consensus       235 gl-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~  313 (631)
T PRK07769        235 GL-ITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLN  313 (631)
T ss_pred             hh-HHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEe
Confidence            99 566777888999988753  4  89999999999986   7899999887766543   11  11457899999999


Q ss_pred             ecccCCHHHHHHHHHhCC-----CCcccccC
Q 019348          317 GAAPLGKELMEDCQKNIP-----GATIFQKI  342 (342)
Q Consensus       317 gG~~l~~~~~~~~~~~~~-----~~~l~~~Y  342 (342)
                      ||+++++++.++|++.|+     ...++++|
T Consensus       314 gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~Y  344 (631)
T PRK07769        314 GSEPVSPASMRKFNEAFAPYGLPPTAIKPSY  344 (631)
T ss_pred             ccCCCCHHHHHHHHHHHhhcCCChhhccccc
Confidence            999999999999999884     23577877

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.8e-36  Score=288.24  Aligned_cols=307  Identities=19%  Similarity=0.230  Sum_probs=227.8

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCC---CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G  103 (342)
                      .|+.+.+.++   +++++|+++.+.   .+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|
T Consensus        87 ~n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~G  163 (652)
T TIGR01217        87 LNYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVG  163 (652)
T ss_pred             eeHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence            5777776653   468889886532   2689999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCCCCHHHHHHHhhhcCceEEEEcccch---------hhhh----ccC-CC-eEEecCCCcccccccccccccc
Q 019348          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVK----DLN-LP-AVLLGSKDKVSSSGLISRSSKI  168 (342)
Q Consensus       104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  168 (342)
                      ++++|+++.++.+++.+++++++|+++|+++...         ..+.    .+. .. .+.+........  ........
T Consensus       164 av~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~  241 (652)
T TIGR01217       164 AIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRET--EAPKIDGA  241 (652)
T ss_pred             eEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccc--ccccccCc
Confidence            9999999999999999999999999999986532         1111    111 11 222221110000  00001123


Q ss_pred             ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF  248 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  248 (342)
                      ..|+++...... ..........+++++|+|||||||.||||+++|++++..... .....+.+.++|++++..|+.|+.
T Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~  319 (652)
T TIGR01217       242 LDLEDFTAAAQA-AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLK-EHGLHCDLGPGDRLFYYTTTGWMM  319 (652)
T ss_pred             ccHHHHHhcccC-CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHH-HHHhccCCCCCcEEEEeCCcchhh
Confidence            456666543211 111223345689999999999999999999999986543111 123345567889999999999975


Q ss_pred             HHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCC
Q 019348          249 GLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLG  322 (342)
Q Consensus       249 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~  322 (342)
                      +  ..++.+|..|+++++.+.    .++..++++++++++|++..+|.+++.+.....  ....++++||.+++||++++
T Consensus       320 ~--~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~  397 (652)
T TIGR01217       320 W--NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLP  397 (652)
T ss_pred             h--HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCC
Confidence            4  346689999999999852    278999999999999999888888877765421  23467899999999999999


Q ss_pred             HHHHHHHHHhCC-CCcccccC
Q 019348          323 KELMEDCQKNIP-GATIFQKI  342 (342)
Q Consensus       323 ~~~~~~~~~~~~-~~~l~~~Y  342 (342)
                      +++.+++.+.++ +..+.+.|
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~y  418 (652)
T TIGR01217       398 PDGFRWVYDEIKADVWLASIS  418 (652)
T ss_pred             HHHHHHHHHHhCCCceEEecc
Confidence            999999999886 23344443

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-36  Score=284.34  Aligned_cols=302  Identities=20%  Similarity=0.281  Sum_probs=235.8

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++++|+++|+++.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus        10 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~   87 (540)
T PRK06164         10 DTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATV   87 (540)
T ss_pred             CCHHHHHHHHHHhCCCCeEEecC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEE
Confidence            68999999999999999999965  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhccC------CC-eEEecCCCccccccccccccccccHHHH
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDLN------LP-AVLLGSKDKVSSSGLISRSSKIVSFHDL  174 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (342)
                      +|+++..+.+++.++++.+++++++++++...     .+....      .. .+.++......      .......+.+.
T Consensus        88 v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  161 (540)
T PRK06164         88 IAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PAPAPGARVQL  161 (540)
T ss_pred             EecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CCCCccccccc
Confidence            99999999999999999999999999876421     111111      11 11222110000      00000001111


Q ss_pred             HhccCCCCC--CCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348          175 IELSGSVTD--IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (342)
Q Consensus       175 ~~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  252 (342)
                      .........  ........+++++++|||||||.||+|+++|.++...+..  ....+....++++++.+|++|.+|+ .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~g~-~  238 (540)
T PRK06164        162 FALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARA--IARAYGYDPGAVLLAALPFCGVFGF-S  238 (540)
T ss_pred             ccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHH--HHHhcCCCCCCEEEEcCCchhHHHH-H
Confidence            110000000  0012234678999999999999999999999999987554  4444556788999999999999999 7


Q ss_pred             HHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeec-ccCCHHHHHHHHH
Q 019348          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA-APLGKELMEDCQK  331 (342)
Q Consensus       253 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG-~~l~~~~~~~~~~  331 (342)
                      .++.++..|+++++.+.+++..+++.++++++|+++++|.+++.|.+.. ....+++++|.+.++| .+....+.+++.+
T Consensus       239 ~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  317 (540)
T PRK06164        239 TLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARA  317 (540)
T ss_pred             HHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhh
Confidence            8999999999999999999999999999999999999999999998873 3456788999887765 5556677777766


Q ss_pred             hCCCCcccccC
Q 019348          332 NIPGATIFQKI  342 (342)
Q Consensus       332 ~~~~~~l~~~Y  342 (342)
                      .  ++++++.|
T Consensus       318 ~--~~~~~~~Y  326 (540)
T PRK06164        318 R--GVPLTGLY  326 (540)
T ss_pred             c--CCceecce
Confidence            5  48888877

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-37  Score=292.74  Aligned_cols=294  Identities=19%  Similarity=0.277  Sum_probs=224.3

Q ss_pred             CCCCCCCCCCHHHHHhhhcccCCCceEEEeCC-------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh
Q 019348           19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH   91 (342)
Q Consensus        19 ~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~   91 (342)
                      .+.+..  .|+.+++.+.++++|+++|+++.+       ..+.+||+||.+++.++|++|.+. +++||+|+++++|+++
T Consensus        28 ~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e  104 (612)
T PRK12476         28 IALPPG--TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGID  104 (612)
T ss_pred             ccCCcc--CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChh
Confidence            344444  799999999999999999998642       124899999999999999999886 8999999999999999


Q ss_pred             HHHHHHHHHHhCCeEecc-CCCCC--HHHHHHHhhhcCceEEEEcccchhhhhccC-------C-CeEEecCCCcccccc
Q 019348           92 FPICFLGVIAIGAIASTA-NPVYT--VSELSKQVKDSNPKLVITVPELWDKVKDLN-------L-PAVLLGSKDKVSSSG  160 (342)
Q Consensus        92 ~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~  160 (342)
                      ++++++||+++|++++|+ ++..+  .+++.++++.+++++++++++....+....       . ..+.++..       
T Consensus       105 ~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------  177 (612)
T PRK12476        105 YVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAI-------  177 (612)
T ss_pred             HHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccc-------
Confidence            999999999999999999 57766  789999999999999999877655433211       0 11111110       


Q ss_pred             ccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccc-cCCCeEEE
Q 019348          161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVL  239 (342)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~d~~~  239 (342)
                                    .....  .........++++++|+|||||||.||||+++|+++...+..  ....+. +.++++.+
T Consensus       178 --------------~~~~~--~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~~~~~l  239 (612)
T PRK12476        178 --------------PDSAG--ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQ--MILSIDLLDRNTHGV  239 (612)
T ss_pred             --------------ccccc--ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHH--HHHHhccCCCCceEE
Confidence                          00000  111112345689999999999999999999999999876443  223344 56789999


Q ss_pred             EccchhHHHHHHHHHHHHhhcCCeEEEccC--C--CHHHHHHHHH--hccceEEEecHHHHHHHHcCCC----CCccCCC
Q 019348          240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGK--F--DIEMALRAIE--KYRVTVWWVVPPIILALAKNSL----VRKFDIS  309 (342)
Q Consensus       240 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~--~~~~~~~~i~--~~~~t~~~~~P~~l~~l~~~~~----~~~~~l~  309 (342)
                      +.+|++|.+|+ ..++.++..|+++++..+  +  ++..+++.++  +++++.++.+|.++..++....    ....+++
T Consensus       240 ~~~Pl~h~~g~-~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~  318 (612)
T PRK12476        240 SWLPLYHDMGL-SMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLS  318 (612)
T ss_pred             EeCCcccccch-HHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchh
Confidence            99999999998 444444445555555432  3  8999999995  5899999999998887776421    1345688


Q ss_pred             CceEEEeecccCCHHHHHHHHHhCC-----CCcccccC
Q 019348          310 SLKLVGSGAAPLGKELMEDCQKNIP-----GATIFQKI  342 (342)
Q Consensus       310 ~lr~~~~gG~~l~~~~~~~~~~~~~-----~~~l~~~Y  342 (342)
                      ++| +++||+++++++.++|++.|+     ...+++.|
T Consensus       319 ~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~Y  355 (612)
T PRK12476        319 NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSY  355 (612)
T ss_pred             Hhe-EEecccCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence            999 999999999999999999873     23477776

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=6.2e-37  Score=336.50  Aligned_cols=287  Identities=21%  Similarity=0.305  Sum_probs=244.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++.+||++|+++.  ++.+||+||.+++.++|+.|++.|+++|++|+++++++.+++++++|++++|+++
T Consensus      1131 ~~l~~~~~~~a~~~p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~ 1208 (4334)
T PRK05691       1131 AWLPELLNEQARQTPERIALVWD--GGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAY 1208 (4334)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            58999999999999999999987  7799999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-CCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      +|++|.++.+++.++++++++++++++......+.... ...+.++..                ....    ..  ....
T Consensus      1209 vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~----~~--~~~~ 1266 (4334)
T PRK05691       1209 VPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSL----------------HLDS----WP--SQAP 1266 (4334)
T ss_pred             EecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeeccc----------------cccc----cC--CCCC
Confidence            99999999999999999999999999877655443321 111111110                0000    00  1111


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++++|||||||.||||+++|+++.+.+..  ....+.+.++|++++..|++|..++ ..++.+|..|++++
T Consensus      1267 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~s~-~~~~~~L~~G~~l~ 1343 (4334)
T PRK05691       1267 GLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQW--MQATYALDDSDVLMQKAPISFDVSV-WECFWPLITGCRLV 1343 (4334)
T ss_pred             CCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHH--HHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHhCCCEEE
Confidence            12345789999999999999999999999999987544  4555667889999999999999988 78999999999999


Q ss_pred             Ecc---CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+   ..++..+++.++++++|++.++|++++.+.....  ...+++||.+++||+++++++.++|.+.+++++++|.|
T Consensus      1344 i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 1421 (4334)
T PRK05691       1344 LAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRY 1421 (4334)
T ss_pred             EcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCC
Confidence            985   3689999999999999999999999999987542  34688999999999999999999999999889999998

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-36  Score=280.50  Aligned_cols=305  Identities=20%  Similarity=0.259  Sum_probs=238.2

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      ++++.+.|.+.++.+|+++|+.+.  +..+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~   94 (545)
T PRK08162         17 PLTPLSFLERAAEVYPDRPAVIHG--DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAV   94 (545)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence            368899999999999999999987  779999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CC-CeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      ++|+++..+.+++.++++.++++.++++++....+.+.    .. ..+.++.......   .....+...+.++..... 
T Consensus        95 ~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-  170 (545)
T PRK08162         95 LNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYP---GGRFIGALDYEAFLASGD-  170 (545)
T ss_pred             EeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccc---cCCCcccccHHHHhccCC-
Confidence            99999999999999999999999999998776654432    11 1222221110000   011122334555554322 


Q ss_pred             CCCCC-CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          181 VTDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       181 ~~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                       .... ......++.++|+|||||||.||+|+++|+++...+..  .........++++++.+|++|.+++...++ ...
T Consensus       171 -~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~-~~~  246 (545)
T PRK08162        171 -PDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALS--NILAWGMPKHPVYLWTLPMFHCNGWCFPWT-VAA  246 (545)
T ss_pred             -ccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhcCCCCCCeeEeccCcHhhhhHHHHHH-HHH
Confidence             1111 11223457899999999999999999999987766433  233344567789999999999999844444 444


Q ss_pred             cCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccc
Q 019348          260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (342)
Q Consensus       260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~  339 (342)
                      .|++.++..++++..+++.++++++|++.++|.+++.|++........+.+.+.++++|+++++++.+.+++.  +++++
T Consensus       247 ~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~  324 (545)
T PRK08162        247 RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLT  324 (545)
T ss_pred             HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCcee
Confidence            5666666677899999999999999999999999999998765444456667778899999999999999875  48898


Q ss_pred             ccC
Q 019348          340 QKI  342 (342)
Q Consensus       340 ~~Y  342 (342)
                      +.|
T Consensus       325 ~~Y  327 (545)
T PRK08162        325 HVY  327 (545)
T ss_pred             ecc
Confidence            887

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=5.3e-36  Score=281.57  Aligned_cols=311  Identities=23%  Similarity=0.377  Sum_probs=241.2

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~  104 (342)
                      ..++.++|.+.++++|+++|+++.  ++.+||+||.+++.++|+.|. +.|+++||+|+++++|+.+++++++||+++|+
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~  101 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGL  101 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCe
Confidence            368999999999999999999986  789999999999999999996 68999999999999999999999999999999


Q ss_pred             eEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCc-cc--------------c-cccccc
Q 019348          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDK-VS--------------S-SGLISR  164 (342)
Q Consensus       105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~-~~--------------~-~~~~~~  164 (342)
                      +++|++|..+.+++.++++.++++++++++.....+...    ....+....... ..              . ....-.
T Consensus       102 ~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (560)
T PRK08751        102 TVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYR  181 (560)
T ss_pred             EEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccC
Confidence            999999999999999999999999999987765544332    111122111000 00              0 000000


Q ss_pred             ccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccc----cC-CCeEEE
Q 019348          165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV----GE-LDHVVL  239 (342)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~----~~-~~d~~~  239 (342)
                      ......+.+....... .........++++++++|||||||.||+|.++|.++...+...  ...+.    .. .+++++
T Consensus       182 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~  258 (560)
T PRK08751        182 INGAIRFREALALGRK-HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQA--HQWLAGTGKLEEGCEVVI  258 (560)
T ss_pred             CCccccHHHHHhccCC-CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHH--HHhhccccccCCCCceEE
Confidence            1122234443332221 1122234567899999999999999999999999998764432  22221    22 246778


Q ss_pred             EccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeec
Q 019348          240 CVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA  318 (342)
Q Consensus       240 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG  318 (342)
                      +..|++|.+++....+.++..|+++++. ..+++..+++.++++++|++..+|.++..+.+.....+.+++++|.+++||
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG  338 (560)
T PRK08751        259 TALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGG  338 (560)
T ss_pred             EecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCC
Confidence            8899999999855667777788776665 467899999999999999999999999999987766667788999999999


Q ss_pred             ccCCHHHHHHHHHhCCCCcccccC
Q 019348          319 APLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++++++.+.|++.++ +++++.|
T Consensus       339 ~~~~~~~~~~~~~~~~-~~~~~~Y  361 (560)
T PRK08751        339 MAVQRSVAERWKQVTG-LTLVEAY  361 (560)
T ss_pred             CCCCHHHHHHHHHHhC-CeEEEee
Confidence            9999999999999886 8888877

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-36  Score=296.97  Aligned_cols=304  Identities=14%  Similarity=0.179  Sum_probs=230.9

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++++||++|+++.  ++++||+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|+++
T Consensus       447 ~sl~~ll~~~a~~~pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~  524 (994)
T PRK07868        447 ISLGRIIAEQARDAPKGEFLLFD--GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVA  524 (994)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence            78999999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCC-CC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD-IP  185 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  185 (342)
                      +|++|.   +++.++++.++++++|++++....+.......+.++....... . .........+++.......... ..
T Consensus       525 vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~  599 (994)
T PRK07868        525 VLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDL-D-LPDDADVIDMEKIDPDAVELPGWYR  599 (994)
T ss_pred             EEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccc-c-CCcchhhhhhhhcCcccccCCcccC
Confidence            999984   6899999999999999998776655444334444332110000 0 0000001111111110000000 00


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|| ||||.||++.++|.++.....  .....+.+..+|++++..|++|.+++...++..+..|++++
T Consensus       600 ~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~--~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vv  676 (994)
T PRK07868        600 PNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAF--GTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIA  676 (994)
T ss_pred             CCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHH--hhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEE
Confidence            112235889999998 577777777677766554422  23334556789999999999999999555666777777788


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+++++..+++.|+++++|+++++|++++.|++.......++++||.++ | +.+++++.+++++.||++++++.|
T Consensus       677 l~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~Y  751 (994)
T PRK07868        677 LSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFF  751 (994)
T ss_pred             ecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeee
Confidence            88889999999999999999999999999999987655555678999876 3 349999999999999878899887

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=3.4e-36  Score=303.87  Aligned_cols=299  Identities=19%  Similarity=0.268  Sum_probs=236.8

Q ss_pred             CCHHHHHhhhcccCC-CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p-~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .++.+.+.+.++++| ++.++.+. +++++||+||.++++++|+.|++ |+++||+|+++++|+++++++++||+++|++
T Consensus       631 ~~~~~~l~~~~~~~~~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v  708 (1140)
T PRK06814        631 RTLFEALIEAAKIHGFKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV  708 (1140)
T ss_pred             CCHHHHHHHHHHHcCCCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence            578888888888887 55666653 36899999999999999999976 9999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhh------ccC--CCeEEecCCCccccccccccccccccHHHHHhc
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK------DLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL  177 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (342)
                      +++++|..+.+++.++++++++++++++++..+...      +..  ...+.++...        .....+..+.+....
T Consensus       709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~  780 (1140)
T PRK06814        709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVR--------AQIGLADKIKGLLAG  780 (1140)
T ss_pred             EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhh--------ccCChHHHHHHHhhc
Confidence            999999999999999999999999999876543221      111  1122222110        000001111111111


Q ss_pred             cCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHH
Q 019348          178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ  257 (342)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~  257 (342)
                      ..  .........++++++|+|||||||.||||.+||+++.+.+..  .........+|++++.+|++|.+++...++.+
T Consensus       781 ~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~  856 (1140)
T PRK06814        781 RF--PLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQ--VAARIDFSPEDKVFNALPVFHSFGLTGGLVLP  856 (1140)
T ss_pred             cC--CccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHH--HHHhhCCCCcCEEEEecchHHHHHHHHHHHHH
Confidence            11  111111346789999999999999999999999999887554  34455567889999999999999987778999


Q ss_pred             hhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCC
Q 019348          258 LQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (342)
Q Consensus       258 l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~  336 (342)
                      +..|+++++.++ .+...+.+.++++++|++..+|++++.+.+..  ...+++++|.+++||+++++++.+++++.++ +
T Consensus       857 l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~-~  933 (1140)
T PRK06814        857 LLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFG-I  933 (1140)
T ss_pred             HHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhC-C
Confidence            999999998764 56788899999999999999999999988763  3456889999999999999999999999997 8


Q ss_pred             cccccC
Q 019348          337 TIFQKI  342 (342)
Q Consensus       337 ~l~~~Y  342 (342)
                      ++++.|
T Consensus       934 ~~~~~Y  939 (1140)
T PRK06814        934 RILEGY  939 (1140)
T ss_pred             cEEecc
Confidence            999888

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.6e-36  Score=279.04  Aligned_cols=289  Identities=23%  Similarity=0.291  Sum_probs=223.9

Q ss_pred             hhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCC
Q 019348           35 RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT  114 (342)
Q Consensus        35 ~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~  114 (342)
                      ..++++|+++|+++.++++++||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++++++..+
T Consensus         5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~   84 (501)
T PRK13390          5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT   84 (501)
T ss_pred             hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence            35677899999997655789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCceEEEEcccchhhhhccCC--Ce-EEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCC
Q 019348          115 VSELSKQVKDSNPKLVITVPELWDKVKDLNL--PA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ  191 (342)
Q Consensus       115 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (342)
                      .+++.++++.++++++++++...........  .. +....           .......+++......  .    .....
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~----~~~~~  147 (501)
T PRK13390         85 APEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGG-----------EIDGFGSFEAALAGAG--P----RLTEQ  147 (501)
T ss_pred             HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecC-----------cccccccHHHHhcccC--C----CCCCC
Confidence            9999999999999999998765443322211  11 11110           0011122333322111  0    01122


Q ss_pred             CCeEEEEcCCCCCCCchhhhH--hHHHHHHHhhhh--hhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348          192 TDAAALLYSSGTTGVSKGVIL--THKNFIAASLMI--SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM  267 (342)
Q Consensus       192 ~~~~~i~~TSGtTG~pK~v~~--t~~~l~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~  267 (342)
                      ++.++|+|||||||.||+|++  +|.++.......  .....+....+|+++..+|++|.+++ ...+..+..|+++++.
T Consensus       148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~-~~~~~~~~~g~~~~~~  226 (501)
T PRK13390        148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPL-RWCSMVHALGGTVVLA  226 (501)
T ss_pred             cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHH-HHHHHHHhcCceEEEc
Confidence            357999999999999999995  555544321110  01233456788999999999999987 4445567889999999


Q ss_pred             cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          268 GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       268 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+++..+++.++++++|++.++|+++..+.....  ....+++++|.++.||+++++++.+.+++.++ .++++.|
T Consensus       227 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~Y  302 (501)
T PRK13390        227 KRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLG-PIVYEYY  302 (501)
T ss_pred             CCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcC-Cceeeee
Confidence            98999999999999999999999999999887542  23456789999999999999999999999887 7888877

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-35  Score=276.97  Aligned_cols=312  Identities=26%  Similarity=0.387  Sum_probs=240.5

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .++.++|...++++|+++|+++.  ++++||.||.++++++|..|+ +.|+++|++|+++++|+.+++++++||+++|++
T Consensus        23 ~~l~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  100 (560)
T PRK08974         23 QSLVDMFEQAVARYADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMI  100 (560)
T ss_pred             ccHHHHHHHHHHhCCCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            57999999999999999999986  789999999999999999998 489999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCcccccc----------------ccccc
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSG----------------LISRS  165 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----------------~~~~~  165 (342)
                      ++|++|..+.+++.++++.+++++++++++....+...    ....+............                .....
T Consensus       101 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (560)
T PRK08974        101 VVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL  180 (560)
T ss_pred             EeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccC
Confidence            99999999999999999999999999987655443322    11222211100000000                00000


Q ss_pred             cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccch
Q 019348          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPM  244 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~  244 (342)
                      .....+.+....... ..........+++++|+|||||||.||+|.++|.++..+........ ......++.++..+|+
T Consensus       181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~  259 (560)
T PRK08974        181 PDAISFRSALHKGRR-MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPL  259 (560)
T ss_pred             CCcccHHHHhhccCC-CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcH
Confidence            111222222221110 11112234678999999999999999999999999987643321111 1112356788899999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCH
Q 019348          245 FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (342)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~  323 (342)
                      +|.+++....+.++..|+++++. +..++..+++.++++++|.+.++|++++.+.........+++++|.+++||+++++
T Consensus       260 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~  339 (560)
T PRK08974        260 YHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQ  339 (560)
T ss_pred             HHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCH
Confidence            99999866778888999987776 45688999999999999999999999999998776666678899999999999999


Q ss_pred             HHHHHHHHhCCCCcccccC
Q 019348          324 ELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       324 ~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+.++|++.++ +++++.|
T Consensus       340 ~~~~~~~~~~g-~~~~~~Y  357 (560)
T PRK08974        340 AVAERWVKLTG-QYLLEGY  357 (560)
T ss_pred             HHHHHHHHHhC-CcEEeee
Confidence            99999999886 8898887

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-36  Score=285.28  Aligned_cols=292  Identities=20%  Similarity=0.247  Sum_probs=224.0

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC-------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      +++.++|.+.+..+|+++|+++.+       ..+++||+||.+++.++|+.|.+.| .+||+|+++++|+++++++++||
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~   79 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA   79 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence            468899999999999999998642       1278999999999999999999999 68999999999999999999999


Q ss_pred             HHhCCeEeccCC---CCCHHHHHHHhhhcCceEEEEcccchhhhhccC-------CC-eEEecCCCcccccccccccccc
Q 019348          100 IAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-------LP-AVLLGSKDKVSSSGLISRSSKI  168 (342)
Q Consensus       100 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~  168 (342)
                      +++|++++|+++   ..+.+++.++++.+++++++++++....+.+..       .. .+.++..               
T Consensus        80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  144 (578)
T PRK05850         80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL---------------  144 (578)
T ss_pred             HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc---------------
Confidence            999999999997   457889999999999999999987766554321       00 1111000               


Q ss_pred             ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-cc---ccCCCeEEEEccch
Q 019348          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-EL---VGELDHVVLCVLPM  244 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~---~~~~~d~~~~~~p~  244 (342)
                          ++..  .  .........++++++|+|||||||.||||+++|++++..+....... ..   ....++++++..|+
T Consensus       145 ----~~~~--~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  216 (578)
T PRK05850        145 ----DLDS--P--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPF  216 (578)
T ss_pred             ----cccc--C--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCC
Confidence                0000  0  00111234568999999999999999999999999987644321111 11   12457899999999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEccCC----CHHHHHHHHHhccceEEEecHHHHHHHHcCC---CCCccCCCCceEEEee
Q 019348          245 FHVFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKNS---LVRKFDISSLKLVGSG  317 (342)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~l~~lr~~~~g  317 (342)
                      +|.+|++..++.++..|+++++.++.    ++..+++.++++++++...++..+..+....   .....+++++|.+++|
T Consensus       217 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~g  296 (578)
T PRK05850        217 YHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSAAPNFAFELAVRKTSDDDMAGLDLGGVLGIISG  296 (578)
T ss_pred             CCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEeCCcHHHHHHHHhcchhhhcCcchhhheeEEEC
Confidence            99999977899999999999998642    7899999999999986644444444444322   1223467899999999


Q ss_pred             cccCCHHHHHHHHHhCC-----CCcccccC
Q 019348          318 AAPLGKELMEDCQKNIP-----GATIFQKI  342 (342)
Q Consensus       318 G~~l~~~~~~~~~~~~~-----~~~l~~~Y  342 (342)
                      |+++++++.++|.+.|+     +..+++.|
T Consensus       297 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y  326 (578)
T PRK05850        297 SERVHPATLKRFADRFAPFNLRETAIRPSY  326 (578)
T ss_pred             cCCCCHHHHHHHHHHHHhcCcCcccccCcc
Confidence            99999999999999874     23577766

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.5e-36  Score=282.71  Aligned_cols=287  Identities=13%  Similarity=0.132  Sum_probs=218.2

Q ss_pred             HHHHHhhhcccCCCceEEEeCCCC--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           29 MVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        29 l~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      +.+.|.+.++++|+++|+++.+.+  +++||+||.++++++|..|.+.  ++||+|+|+++|+++++++++||+++|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~   81 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV   81 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence            788999999999999999987433  7899999999999999999887  799999999999999999999999999986


Q ss_pred             eccCCC-------CCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccC
Q 019348          107 STANPV-------YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (342)
Q Consensus       107 v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (342)
                      ++++..       ...+++.++++.+++++++++++....+...... +.+.                  .+....... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~------------------~~~~~~~~~-  141 (525)
T PRK05851         82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-VTVH------------------DLATAAHTN-  141 (525)
T ss_pred             cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-cccc------------------ccccccccc-
Confidence            543311       2234566778999999999987765544322110 0000                  000000000 


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccC-CCeEEEEccchhHHHHHHHHHHHHh
Q 019348          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPMFHVFGLSVILYDQL  258 (342)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~d~~~~~~p~~~~~g~~~~~~~~l  258 (342)
                        .........++++++|+|||||||.||||++||.++...+..  ....+... .+|++++.+|++|.+++ ..++.++
T Consensus       142 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~--~~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l  216 (525)
T PRK05851        142 --RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRG--LNARVGLDAATDVGCSWLPLYHDMGL-AFLLTAA  216 (525)
T ss_pred             --ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHH--HHHHhCCCCCCCeEEEcCCCccCccH-HHHHHHH
Confidence              000111235689999999999999999999999999987655  34445556 78999999999999999 6788999


Q ss_pred             hcCCeEEEccC--C--CHHHHHHHHHhccceEEEecHHHHHHHHcCCC-CCccCCCCceEEEeecccCCHHHHHHHHHh-
Q 019348          259 QKGNCVVSMGK--F--DIEMALRAIEKYRVTVWWVVPPIILALAKNSL-VRKFDISSLKLVGSGAAPLGKELMEDCQKN-  332 (342)
Q Consensus       259 ~~G~~~v~~~~--~--~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~-  332 (342)
                      ..|+++++.+.  +  ++..+++.++++++|++..+|.++..+.+... ....++++||.+++||+++++++.++|++. 
T Consensus       217 ~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  296 (525)
T PRK05851        217 LAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAM  296 (525)
T ss_pred             HcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHH
Confidence            99999999763  4  67899999999999988666655555543321 234567899999999999999999999875 


Q ss_pred             --CC--CCcccccC
Q 019348          333 --IP--GATIFQKI  342 (342)
Q Consensus       333 --~~--~~~l~~~Y  342 (342)
                        +|  +..+++.|
T Consensus       297 ~~~g~~~~~~~~~Y  310 (525)
T PRK05851        297 APFGFDAGAAAPSY  310 (525)
T ss_pred             hhcCCChhhccccc
Confidence              33  23478777

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-36  Score=274.39  Aligned_cols=264  Identities=21%  Similarity=0.217  Sum_probs=220.3

Q ss_pred             cccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHH
Q 019348           37 SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVS  116 (342)
Q Consensus        37 ~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~  116 (342)
                      ....++++|+++.  ++++||+||.++++++|..|+     ++|+|+++++|+++++++++||+++|++++|+++..+.+
T Consensus        10 ~~~~~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~   82 (471)
T PRK07787         10 AAAADIADAVRIG--GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVA   82 (471)
T ss_pred             hcccCCceEEEeC--CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChH
Confidence            3456799999987  889999999999999999996     479999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEE
Q 019348          117 ELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  196 (342)
Q Consensus       117 ~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (342)
                      ++.++++++++++++++.+...    ...+.......              ..            .........+++.++
T Consensus        83 ~l~~~l~~~~~~~il~~~~~~~----~~~~~~~~~~~--------------~~------------~~~~~~~~~~~~~a~  132 (471)
T PRK07787         83 ERRHILADSGAQAWLGPAPDDP----AGLPHVPVRLH--------------AR------------SWHRYPEPDPDAPAL  132 (471)
T ss_pred             HHHHHHHhcCCCEEEecCCccc----ccccceeeecc--------------cc------------ccccCCCCCCCceEE
Confidence            9999999999999999763110    00111100000              00            000111245689999


Q ss_pred             EEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHH
Q 019348          197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL  276 (342)
Q Consensus       197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~  276 (342)
                      ++|||||||.||+|.++|+++...+..  ....+...++|++++.+|++|.+|+...++.++..|+++++.+.+++..++
T Consensus       133 i~~TSGTTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~  210 (471)
T PRK07787        133 IVYTSGTTGPPKGVVLSRRAIAADLDA--LAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYA  210 (471)
T ss_pred             EEECCCCCCCCCEEEEeHHHHHHHHHH--HHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHH
Confidence            999999999999999999999987554  334455678899999999999999977899999999999999889999999


Q ss_pred             HHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       277 ~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.++ +++|++.++|.++..|++.... ...++++|.+++||+++++.+.++|.+.++ .++++.|
T Consensus       211 ~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~Y  273 (471)
T PRK07787        211 QALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTG-HRPVERY  273 (471)
T ss_pred             HHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcC-CCeeccc
Confidence            9999 9999999999999999875432 346789999999999999999999999887 8899887

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-35  Score=273.39  Aligned_cols=293  Identities=23%  Similarity=0.266  Sum_probs=230.2

Q ss_pred             hhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC
Q 019348           34 FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY  113 (342)
Q Consensus        34 ~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~  113 (342)
                      ...++++||++|+++.+.++.+||.||.+++.++++.|.+.|+++|++|+++++|+++++++++||+++|++++++++..
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~   83 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL   83 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence            45678899999999865578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhhhcCceEEEEcccchhhhhccC-----C-CeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCC
Q 019348          114 TVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV  187 (342)
Q Consensus       114 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (342)
                      +.+++.++++.++++.++++........+..     . ..+.+...         ........+.+......     ...
T Consensus        84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----~~~  149 (511)
T PRK13391         84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGD---------GELEGFVGYAEAVAGLP-----ATP  149 (511)
T ss_pred             CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCC---------CCCcccccHHHHhcCCC-----CCC
Confidence            9999999999999999999977655443221     1 11222211         01112223333332111     111


Q ss_pred             CCCCCCeEEEEcCCCCCCCchhhhH--hHHHHHHHhhh-hhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeE
Q 019348          188 SVKQTDAAALLYSSGTTGVSKGVIL--THKNFIAASLM-ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV  264 (342)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~--t~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~  264 (342)
                      ....++.++++|||||||.||+|.+  +|.++...... ......+....++++++..|++|.+++ ...+.++..|+++
T Consensus       150 ~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~-~~~~~~~~~g~~~  228 (511)
T PRK13391        150 IADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQ-RAVMLVIRLGGTV  228 (511)
T ss_pred             CCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHH-HHHHHHHHcCceE
Confidence            1233467899999999999999984  46554332111 112333445678999999999999998 6778899999999


Q ss_pred             EEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       265 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++.+.+++..+++.++++++|++.++|+++..+.+...  ....+++++|.+++||+++++++.+++++.++ ..+++.|
T Consensus       229 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~~Y  307 (511)
T PRK13391        229 IVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWG-PIIHEYY  307 (511)
T ss_pred             EECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcC-Cceeeee
Confidence            99999999999999999999999999999998876543  23346889999999999999999999999887 7888877

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-35  Score=279.51  Aligned_cols=300  Identities=19%  Similarity=0.225  Sum_probs=231.7

Q ss_pred             CCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHH
Q 019348           18 PLVLPSDPSFSMVHFLFRNSASYSSKLALIDADS--DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC   95 (342)
Q Consensus        18 ~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~   95 (342)
                      +.+++..  .++.+++...++++|+..++ +.+.  .+.+||.||++++.++|.+|++.|+++||+|+++++|+++++++
T Consensus        14 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~   90 (579)
T PRK09192         14 PRRYADF--PTLVEALDYAALGEAGMNFY-DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEA   90 (579)
T ss_pred             cccccch--hhHHHHHHHhhccCCceEEE-ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHH
Confidence            3455555  79999999999998866654 4322  26899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeEeccCCCCC-------HHHHHHHhhhcCceEEEEcccchhhhhccC--CCeEEecCCCcccccccccccc
Q 019348           96 FLGVIAIGAIASTANPVYT-------VSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSS  166 (342)
Q Consensus        96 ~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (342)
                      ++||+++|++++|+++..+       .+++.++++.+++++++++++....+.+..  ...+.                 
T Consensus        91 ~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~-----------------  153 (579)
T PRK09192         91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLH-----------------  153 (579)
T ss_pred             HHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccc-----------------
Confidence            9999999999999987543       588999999999999999987665544321  11000                 


Q ss_pred             ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchh
Q 019348          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMF  245 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~  245 (342)
                       ...+.++.....  .........++++++|+|||||||.||+|.++|++++.....  ... .+....+|++++++|++
T Consensus       154 -~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~--~~~~~~~~~~~d~~l~~~p~~  228 (579)
T PRK09192        154 -VLSHAWFKALPE--ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRA--ISHDGLKVRPGDRCVSWLPFY  228 (579)
T ss_pred             -eeehhhhcccCC--CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHH--HHhhcccCCCCCeEEEeCCCC
Confidence             112222221111  111122345689999999999999999999999999987544  233 55567889999999999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC---CCccCCCCceEEEeec
Q 019348          246 HVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL---VRKFDISSLKLVGSGA  318 (342)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~l~~lr~~~~gG  318 (342)
                      |.+|+...++.++..|+++++.+.    .++..+++.+.++++++++.+|..+..+.....   ....+++++|.+++||
T Consensus       229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG  308 (579)
T PRK09192        229 HDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGA  308 (579)
T ss_pred             CcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecC
Confidence            999997678888999999987652    368999999999999988877766665553321   2335688999999999


Q ss_pred             ccCCHHHHHHHHHhCCC-----CcccccC
Q 019348          319 APLGKELMEDCQKNIPG-----ATIFQKI  342 (342)
Q Consensus       319 ~~l~~~~~~~~~~~~~~-----~~l~~~Y  342 (342)
                      +++++.+.++|.+.++.     ..+++.|
T Consensus       309 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~y  337 (579)
T PRK09192        309 DMIRPDVLHQFAEAFAPAGFDDKAFMPSY  337 (579)
T ss_pred             ccCCHHHHHHHHHHHHhcCCChhhccccc
Confidence            99999999999988741     2366665

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5e-35  Score=268.33  Aligned_cols=267  Identities=21%  Similarity=0.215  Sum_probs=218.8

Q ss_pred             HHHHH-hhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348           29 MVHFL-FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (342)
Q Consensus        29 l~~~l-~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  107 (342)
                      +.+.. .+.++++|+++|+++.  ++.+||+||.++++++|..|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus         4 ~~~~~~~~~a~~~~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v   81 (458)
T PRK09029          4 FSDWPWRHWAQVRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVL   81 (458)
T ss_pred             hhcChHHHHHHhCCCceeeecC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEe
Confidence            33444 3447889999999976  78999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCC
Q 019348          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV  187 (342)
Q Consensus       108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (342)
                      |+++..+.+++.++++++++++++++++.... ....  ...                     ..     ..  ......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~--~~~---------------------~~-----~~--~~~~~~  130 (458)
T PRK09029         82 PLNPQLPQPLLEELLPSLTLDFALVLEGENTF-SALT--SLH---------------------LQ-----LV--EGAHAV  130 (458)
T ss_pred             ecCCCCCHHHHHHHHHhcCCCEEEEcCcccch-hhcc--ccc---------------------cc-----cc--cccCcc
Confidence            99999999999999999999999987664321 1000  000                     00     00  111122


Q ss_pred             CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM  267 (342)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~  267 (342)
                      ...++++++++|||||||.||+|.+||++++..+..  ....+....+|+++...|++|.+|+ ..++.++..|+++++.
T Consensus       131 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~  207 (458)
T PRK09029        131 AWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEG--VLSLMPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVR  207 (458)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHH--HhhcCCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeC
Confidence            445788999999999999999999999999988655  3444556788999999999999998 6778899999999988


Q ss_pred             cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          268 GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       268 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.   ..+++.+  .++|.+..+|+++..++.....    ..++|.+++||+++++.+.+.+.+.  ++++++.|
T Consensus       208 ~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~Y  271 (458)
T PRK09029        208 DK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGY  271 (458)
T ss_pred             Ch---HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccc
Confidence            75   5566776  4799999999999998876532    3479999999999999999999875  48898887

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-34  Score=270.53  Aligned_cols=291  Identities=20%  Similarity=0.237  Sum_probs=229.1

Q ss_pred             CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  107 (342)
                      ++.+.+...++.+|+.+++.+.+.++.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~   82 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT   82 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence            57888999999999999998887778999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHH-------HHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348          108 TANPVYTVSEL-------SKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       108 ~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      ++++..+.+++       .++++.++++.+++++............                  ......++++..... 
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~-  143 (545)
T PRK07768         83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK------------------GIRVLTVADLLAADP-  143 (545)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc------------------CCceeehhhhcccCC-
Confidence            99998876544       4567778999999987654433222110                  011123334332211 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCC-eEEEEccchhHHHHHHHHHHHHhh
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD-HVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~-d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                         .......++++++|+|||||||.||+|+++|+++...+..  ......+..+ |++++.+|++|..++...++.++.
T Consensus       144 ---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  218 (545)
T PRK07768        144 ---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEA--MFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMY  218 (545)
T ss_pred             ---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHH--HHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHH
Confidence               1122445789999999999999999999999999887554  3333444554 899999999999999667788999


Q ss_pred             cCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCC----CCCccCCCCceEEEeecccCCHHHHHHHHH
Q 019348          260 KGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNS----LVRKFDISSLKLVGSGAAPLGKELMEDCQK  331 (342)
Q Consensus       260 ~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~----~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~  331 (342)
                      .|+++++.++    .++..+++.+++++++++..+|..+..+....    .....+++++|.+++||+++++...+.+.+
T Consensus       219 ~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~  298 (545)
T PRK07768        219 FGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLD  298 (545)
T ss_pred             CCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHH
Confidence            9999988754    26888999999999999988888777665432    122467889999999999999999999987


Q ss_pred             h---CC--CCcccccC
Q 019348          332 N---IP--GATIFQKI  342 (342)
Q Consensus       332 ~---~~--~~~l~~~Y  342 (342)
                      .   ++  ...+++.|
T Consensus       299 ~~~~~g~~~~~~~~~y  314 (545)
T PRK07768        299 AGARFGLRPEAILPAY  314 (545)
T ss_pred             HHHhcCCCcccccccc
Confidence            4   44  12477666

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-34  Score=260.79  Aligned_cols=242  Identities=17%  Similarity=0.152  Sum_probs=208.9

Q ss_pred             EEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhc
Q 019348           46 LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS  125 (342)
Q Consensus        46 ~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~  125 (342)
                      +++.  ++++||+||.++++++|..|. .|+++|++|+++++|+.+++++++|++++|++++|+++..+.+++..+++++
T Consensus         2 ~~~~--~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~   78 (414)
T PRK08308          2 LIVN--DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRA   78 (414)
T ss_pred             eEec--CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhC
Confidence            4555  679999999999999999985 6899999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCC
Q 019348          126 NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  205 (342)
Q Consensus       126 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG  205 (342)
                      +++++++++....           ..                              .   .....++++++++|||||||
T Consensus        79 ~~~~~i~~~~~~~-----------~~------------------------------~---~~~~~~~~~~~i~~TSGtTG  114 (414)
T PRK08308         79 GCHGLLYGESDFT-----------KL------------------------------E---AVNYLAEEPSLLQYSSGTTG  114 (414)
T ss_pred             CCCEEEecCcccc-----------cc------------------------------c---CCCCCCCCceEEEECCCCCC
Confidence            9999998752100           00                              0   01234578999999999999


Q ss_pred             CchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccce
Q 019348          206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  285 (342)
Q Consensus       206 ~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t  285 (342)
                      .||+|.+||+++...+..  ....+....+|+.+...|++|.+|++..++.++..|+++++.+.+++..+++.++++++|
T Consensus       115 ~PKgv~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t  192 (414)
T PRK08308        115 EPKLIRRSWTEIDREIEA--YNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQH  192 (414)
T ss_pred             CCcEEEEehHhHHHHHHH--HHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCe
Confidence            999999999999887554  334455567899999999999999877899999999999999989999999999999999


Q ss_pred             EEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       286 ~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .++++|.++..+.+....    ..+++.+++||+++++.+.+++++.  +.++++.|
T Consensus       193 ~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~Y  243 (414)
T PRK08308        193 ILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQY  243 (414)
T ss_pred             EEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhcc
Confidence            999999999999876522    1368899999999999999999987  36788877

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.2e-34  Score=260.42  Aligned_cols=263  Identities=22%  Similarity=0.320  Sum_probs=219.1

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348           56 SFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP  134 (342)
Q Consensus        56 Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~  134 (342)
                      ||.||.+.+.++++.|.+ .|+++||+|+++++|+.+++++++||+.+|++++|+++..+.+++.++++.++++++++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999988 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhH
Q 019348          135 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH  214 (342)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~  214 (342)
                      +....+.......+.....                 +........ ...........+++++++|||||||.||+|.+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~  142 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPL-----------------ELAALDDAP-APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTH  142 (408)
T ss_pred             chhhhccccCCceEEechh-----------------hhhhccccc-ccccccCCCCCCCcEEEEEcCCCCCCCCEEEecc
Confidence            8776665443222222211                 000000000 0111111145689999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCC---HHHHHHHHHhccceEEEecH
Q 019348          215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD---IEMALRAIEKYRVTVWWVVP  291 (342)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~i~~~~~t~~~~~P  291 (342)
                      +++...+...  ...+....+|++++..|++|.+++ ..++.++..|+++++.+...   +..+.+.++++++|.+.++|
T Consensus       143 ~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p  219 (408)
T TIGR01733       143 RSLVNLLAWL--ARRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTP  219 (408)
T ss_pred             HHHHHHHHHH--HHhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCH
Confidence            9999886553  345556788999999999999998 78999999999999987643   68999999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       292 ~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+++.+.+...   ..+++||.+++||+++++++.++|++.++++.+++.|
T Consensus       220 ~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~Y  267 (408)
T TIGR01733       220 SLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLY  267 (408)
T ss_pred             HHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecc
Confidence            99999998764   5688999999999999999999999999878898887

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.5e-34  Score=264.51  Aligned_cols=281  Identities=28%  Similarity=0.355  Sum_probs=221.5

Q ss_pred             EEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhh
Q 019348           45 ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD  124 (342)
Q Consensus        45 a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~  124 (342)
                      |++....++.+||.||.+.+.++++.|++.|+++||+|+++++|+.+++++++||+++|++++|+++..+.+++.++++.
T Consensus         2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~   81 (502)
T PRK08276          2 AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD   81 (502)
T ss_pred             ceEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence            34433448999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEcccchhhhhcc------CCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEE
Q 019348          125 SNPKLVITVPELWDKVKDL------NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  198 (342)
Q Consensus       125 ~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  198 (342)
                      ++++++++++.......+.      ....+.+...          .......|.+......     .......++.++++
T Consensus        82 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~  146 (502)
T PRK08276         82 SGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG----------PVPGFRSYEEALAAQP-----DTPIADETAGADML  146 (502)
T ss_pred             CCCCEEEEccchhhHHHHHhhhccccccEEEEeCC----------CCCccccHHHHHhcCC-----CCCCCCCCcceEEE
Confidence            9999999998776654432      1222222211          1122234444433221     11123456789999


Q ss_pred             cCCCCCCCchhhhHhHHHHHHHhh---h-hhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHH
Q 019348          199 YSSGTTGVSKGVILTHKNFIAASL---M-ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM  274 (342)
Q Consensus       199 ~TSGtTG~pK~v~~t~~~l~~~~~---~-~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~  274 (342)
                      |||||||.||+|.++|.++.....   . ...........++++++..|++|.+++ ...+.++..|+++++.+.+++..
T Consensus       147 ~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~  225 (502)
T PRK08276        147 YSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPL-RFGMSALALGGTVVVMEKFDAEE  225 (502)
T ss_pred             ECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHH-HHHHHHHhccceEEEcCCCCHHH
Confidence            999999999999988776553211   0 001111212467899999999999998 66668999999999999899999


Q ss_pred             HHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          275 ALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       275 ~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++.++++++|++.++|+++..+++....  ...+++++|.+++||++++.++.+++++.++ ..+++.|
T Consensus       226 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~~y  294 (502)
T PRK08276        226 ALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG-PIIHEYY  294 (502)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC-cHhhhhc
Confidence            99999999999999999999999887542  3456889999999999999999999999887 7788776

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=8.4e-34  Score=263.70  Aligned_cols=289  Identities=20%  Similarity=0.261  Sum_probs=222.5

Q ss_pred             EEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhh
Q 019348           45 ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD  124 (342)
Q Consensus        45 a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~  124 (342)
                      |+++.  ++.+||.||.++++++|++|.+.|+++||+|+++++|+.+++++++||+++|+++++++|..+.+++.++++.
T Consensus         4 ~~~~~--~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~   81 (509)
T PRK12406          4 TIISG--DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILED   81 (509)
T ss_pred             EEEEC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhc
Confidence            56665  7899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEcccchhhhhccC---CCeEEecCCCccc-----cccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEE
Q 019348          125 SNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVS-----SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  196 (342)
Q Consensus       125 ~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (342)
                      +++++++++......+.+..   ...+.........     .............++++.....     .......+++++
T Consensus        82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~  156 (509)
T PRK12406         82 SGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE-----PYDGPPVPQPQS  156 (509)
T ss_pred             cCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccC-----ccCCCCCCCceE
Confidence            99999999877665443221   1111111110000     0000011223344555543221     112234679999


Q ss_pred             EEcCCCCCCCchhhhHhHHHHHHHhhh-hhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHH
Q 019348          197 LLYSSGTTGVSKGVILTHKNFIAASLM-ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA  275 (342)
Q Consensus       197 i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~  275 (342)
                      ++|||||||.||+|.++|......... ......+....++++++..|++|..+. ...+.++..|+++++.+.+++..+
T Consensus       157 i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~  235 (509)
T PRK12406        157 MIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPN-AYGLRAGRLGGVLVLQPRFDPEEL  235 (509)
T ss_pred             EEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchH-HHHHHHHhhheEEEEccCCCHHHH
Confidence            999999999999998765543322111 112334556788999999999999887 555667899999999988999999


Q ss_pred             HHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          276 LRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       276 ~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ++.++++++|.+.++|.+++.|+....  ....+++++|.+++||+++++++.+++.+.++ +.+++.|
T Consensus       236 ~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~~Y  303 (509)
T PRK12406        236 LQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYEYY  303 (509)
T ss_pred             HHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEeec
Confidence            999999999999999999999987643  23456889999999999999999999999887 8888877

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-34  Score=250.74  Aligned_cols=313  Identities=20%  Similarity=0.272  Sum_probs=246.6

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCC----------CC-----------cceeHHHHHHHHHHHHHHHHHcCCCCCCE-EE
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDAD----------SD-----------ESLSFSQFKSIVIKVSHSFRHLGITKKDV-VL   83 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~-V~   83 (342)
                      -.|+.+++.+.++++.++.++-.++          ++           .++||.|+.+++.++++.|.+.|+++++. ++
T Consensus        40 ~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~  119 (678)
T KOG1180|consen   40 ASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIA  119 (678)
T ss_pred             cccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            3799999999999999998875221          11           68999999999999999999999997666 99


Q ss_pred             EECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccc
Q 019348           84 IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVS  157 (342)
Q Consensus        84 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~  157 (342)
                      |+++.+.+|+.+++||++-+...|.+...+.++.+.+-|++++...+|++.+.++.+....     .+ .|..+..+...
T Consensus       120 iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~  199 (678)
T KOG1180|consen  120 IFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDA  199 (678)
T ss_pred             EEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999888654431     22 33333211111


Q ss_pred             ccc----ccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccC
Q 019348          158 SSG----LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE  233 (342)
Q Consensus       158 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~  233 (342)
                      ...    .......+.+|+++++.+.... .++....++|+|+|+|||||||.||||+++|+|+++.+......- ..+.
T Consensus       200 ~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v-~~lg  277 (678)
T KOG1180|consen  200 AKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENV-PELG  277 (678)
T ss_pred             chhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccC-cccC
Confidence            111    1234566788999998887532 344455889999999999999999999999999999866532222 2567


Q ss_pred             CCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHH--------HHHHHHhccceEEEecHHHHHHHHcCCC---
Q 019348          234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM--------ALRAIEKYRVTVWWVVPPIILALAKNSL---  302 (342)
Q Consensus       234 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~--------~~~~i~~~~~t~~~~~P~~l~~l~~~~~---  302 (342)
                      ..|+++.++|+.|++.+ ..=+.++..|+.+...+.....+        .--.+...|+|++.++|.+|+++.+--.   
T Consensus       278 ~~D~yi~yLPLAHIlEl-~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV  356 (678)
T KOG1180|consen  278 PKDRYIAYLPLAHILEL-TAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKV  356 (678)
T ss_pred             CCceEEEechHHHHHHH-HHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999 77788999999999886532222        2223457799999999999966544210   


Q ss_pred             ----------------------C-C----------------ccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          303 ----------------------V-R----------------KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       303 ----------------------~-~----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                                            . .                ...-.+||.+++||+|++++..+.+-..+. +++.++|
T Consensus       357 ~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C-~Pv~qGY  434 (678)
T KOG1180|consen  357 NAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC-CPVLQGY  434 (678)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc-ccccccc
Confidence                                  0 0                001248999999999999999999999887 8999998

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.3e-33  Score=279.78  Aligned_cols=268  Identities=13%  Similarity=0.108  Sum_probs=208.7

Q ss_pred             CCHHHHHhhhcccCCCceEEEeC---CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDA---DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~---~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G  103 (342)
                      .|+.++|.+.++++|+++|+...   +..+++||+|+.++++++|..|.+.|+++||+|+|+++|+++|+++++||+.+|
T Consensus       427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G  506 (1452)
T PTZ00297        427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG  506 (1452)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            69999999999999999999742   223689999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---CCeEEecCCC-ccccccc-cccccccccHHHHHhcc
Q 019348          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKD-KVSSSGL-ISRSSKIVSFHDLIELS  178 (342)
Q Consensus       104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  178 (342)
                      ++.+|+++  +.+++.+++++++++++|++.+....+.+..   .+.+++.... ....... ........+|+++++.+
T Consensus       507 aV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G  584 (1452)
T PTZ00297        507 FTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKG  584 (1452)
T ss_pred             CEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcC
Confidence            99999975  4678999999999999999987776654432   3333332210 0000000 00112356688888765


Q ss_pred             CCCCCCCCCCCCCCCeEEEEc---CCCCCCCchhhhHhHHHHHHHhhhhhhhhc-cccCCCeEEEEccchhHHHHHHHHH
Q 019348          179 GSVTDIPDVSVKQTDAAALLY---SSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLSVIL  254 (342)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~p~~~~~g~~~~~  254 (342)
                      ............+++++.|+|   ||||||.||||++||+|++..+..+..... ....++|++++++|++|+++. ...
T Consensus       585 ~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er-~~~  663 (1452)
T PTZ00297        585 RLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNR-VFV  663 (1452)
T ss_pred             cccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHH-HHH
Confidence            421111123346788999985   999999999999999999998765432211 124578999999999999997 677


Q ss_pred             HHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcC
Q 019348          255 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN  300 (342)
Q Consensus       255 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  300 (342)
                      +.++..|+++.+   +++..+++.|+++++|+++++|.+|+.+.+.
T Consensus       664 ~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~  706 (1452)
T PTZ00297        664 LGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQ  706 (1452)
T ss_pred             HHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHH
Confidence            888999999874   4689999999999999999999999877553

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=6.5e-34  Score=259.58  Aligned_cols=242  Identities=15%  Similarity=0.196  Sum_probs=195.4

Q ss_pred             ceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEE
Q 019348           54 SLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT  132 (342)
Q Consensus        54 ~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  132 (342)
                      -+.|+||.+++.++|+.|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            46799999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             cccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhH
Q 019348          133 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL  212 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  212 (342)
                      +.+.....         .. .                        ..  .  ......+++.++++|||||||.||+|++
T Consensus        99 ~~~~~~~~---------~~-~------------------------~~--~--~~~~~~~~~~~~i~~TSGTTG~PKgV~~  140 (452)
T PRK07445         99 LDQLKLSH---------PP-P------------------------LP--S--QGILPNLETGWIMIPTGGSSGQIRFAIH  140 (452)
T ss_pred             cCcccccc---------CC-C------------------------CC--c--cccCCCCCCcEEEEeCCCCCCCCcEEEe
Confidence            76532110         00 0                        00  0  0012345799999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHH
Q 019348          213 THKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP  292 (342)
Q Consensus       213 t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~  292 (342)
                      ||+++...+...  ...+... .++.++.+|++|.+|+ ..++.++..|+++++.+..+.........++++|++.++|+
T Consensus       141 t~~~l~~~~~~~--~~~~~~~-~~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~  216 (452)
T PRK07445        141 TWETLTASVQGF--QRYFQLQ-QVNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPT  216 (452)
T ss_pred             chHHHHHHHHHH--HHHhcCC-CCceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHH
Confidence            999998775442  2233333 3467889999999998 77889999999999987433333334446789999999999


Q ss_pred             HHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          293 IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       293 ~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++.+.+..   ...+++||.+++||+++++++.+++++.  ++++++.|
T Consensus       217 ~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~Y  261 (452)
T PRK07445        217 QLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTY  261 (452)
T ss_pred             HHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCc
Confidence            999998632   3457899999999999999999998764  48898887

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.2e-33  Score=254.92  Aligned_cols=250  Identities=24%  Similarity=0.320  Sum_probs=207.5

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEccc
Q 019348           56 SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE  135 (342)
Q Consensus        56 Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~  135 (342)
                      ||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++++++.++.+++..+++.++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             chhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHH
Q 019348          136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK  215 (342)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~  215 (342)
                      .....       +...                  .+......... ..........+++++++|||||||.||+|.++|+
T Consensus        81 ~~~~~-------~~~~------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~  134 (436)
T TIGR01923        81 LEEKD-------FQAD------------------SLDRIEAAGRY-ETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFR  134 (436)
T ss_pred             ccccc-------eeec------------------chHhhhhcccc-cccccccCCcCceEEEEeCCCCCCCCcEEEEehH
Confidence            32110       0000                  01111110000 1111223456789999999999999999999999


Q ss_pred             HHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHH
Q 019348          216 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL  295 (342)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~  295 (342)
                      ++...+..  ....+....+|++++..|++|..++ ..++.++..|+++++.+.+  ..+++.++++++|++.++|.++.
T Consensus       135 ~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~  209 (436)
T TIGR01923       135 NHYASAVG--SKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLN  209 (436)
T ss_pred             HHHHHHHH--HHhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHH
Confidence            99887554  4445567788999999999999998 7789999999999999765  49999999999999999999999


Q ss_pred             HHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          296 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       296 ~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+.+.....    +++|.+++||+++++++.+.+++.  ++++++.|
T Consensus       210 ~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~Y  250 (436)
T TIGR01923       210 RLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSY  250 (436)
T ss_pred             HHHhCcCCC----CceEEEEECCCCCCHHHHHHHHHh--CCceeeEe
Confidence            999875322    689999999999999999998875  58898887

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.8e-32  Score=242.74  Aligned_cols=300  Identities=26%  Similarity=0.376  Sum_probs=234.6

Q ss_pred             CCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCH
Q 019348           40 YSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV  115 (342)
Q Consensus        40 ~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~  115 (342)
                      .+++++++...    +...+||.|+.+++.++|..|++.|+++||+|++.+|+.++++++++||.+.|++.+++-...++
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~  157 (626)
T KOG1175|consen   78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA  157 (626)
T ss_pred             CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence            47888887552    22458999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccc-------cccccccccccccHHHHHhccCCCCCCCCCC
Q 019348          116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS-------SSGLISRSSKIVSFHDLIELSGSVTDIPDVS  188 (342)
Q Consensus       116 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (342)
                      .++...++.++++++++.+......+.+....+.........       .............|+.++....  .......
T Consensus       158 ~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~--~~~~~~~  235 (626)
T KOG1175|consen  158 KELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKAS--PEHPCVP  235 (626)
T ss_pred             HHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcC--CCCCcee
Confidence            999999999999999998766554444321111111000000       0000011122445666655555  4444667


Q ss_pred             CCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348          189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG  268 (342)
Q Consensus       189 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  268 (342)
                      ...+|+.+|+|||||||.||++.+++...+-.+ .......+...+.|++.+...+.++.+.....+.+|+.|+++++.+
T Consensus       236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~-~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~  314 (626)
T KOG1175|consen  236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGA-ALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYE  314 (626)
T ss_pred             cCccCceEEEecCCCCCCCCceeeccCcchHHH-hhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEc
Confidence            788999999999999999999988877655432 2224555567899999999999999999777889999999999984


Q ss_pred             --CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          269 --KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       269 --~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                        ++++..+++.+.++++|++++.|+.++.|.+...  ...+++++||.+.++||++.++..+.+.+.++..+|++.|
T Consensus       315 g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~  392 (626)
T KOG1175|consen  315 GPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETY  392 (626)
T ss_pred             CCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhce
Confidence              4699999999999999999999999997766554  3345567899999999999999999999999833566654

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.98  E-value=8.2e-31  Score=242.71  Aligned_cols=251  Identities=17%  Similarity=0.192  Sum_probs=185.2

Q ss_pred             CCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch------hhhhcc----CCCeEEecCCCc
Q 019348           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW------DKVKDL----NLPAVLLGSKDK  155 (342)
Q Consensus        86 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~----~~~~~~~~~~~~  155 (342)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++...      ..+...    ....+.+.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            5899999999999999999999999999999999999999999999986431      111111    111222211100


Q ss_pred             cccccccccccccccHHHHHhccCCC-----CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcc
Q 019348          156 VSSSGLISRSSKIVSFHDLIELSGSV-----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL  230 (342)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~  230 (342)
                      ...   .........|.++.......     .........++++++|+|||||||.||||++||++++..+..  ....+
T Consensus        81 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~--~~~~~  155 (499)
T PLN03051         81 PVA---VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASD--GWAHM  155 (499)
T ss_pred             ccC---CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHhc
Confidence            000   00001223455554221100     011111235689999999999999999999999998765332  23344


Q ss_pred             ccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccC
Q 019348          231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFD  307 (342)
Q Consensus       231 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~  307 (342)
                      ....+|++++..|++|.+++ ..++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++...  ....+
T Consensus       156 ~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~  234 (499)
T PLN03051        156 DIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLD  234 (499)
T ss_pred             CCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCC
Confidence            56788999999999999998 678899999999999874 788999999999999999999999999987653  33457


Q ss_pred             CCCceEEEeecccCCHHHHHHHHHhCC-CCcccccC
Q 019348          308 ISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQKI  342 (342)
Q Consensus       308 l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~l~~~Y  342 (342)
                      +++||.+++||++++++..+++++.++ ++++++.|
T Consensus       235 ~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~Y  270 (499)
T PLN03051        235 WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYC  270 (499)
T ss_pred             chhheEEEecCCCCCHHHHHHHHHhccccceeEeee
Confidence            889999999999999999988777332 26788877

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.97  E-value=5.9e-30  Score=210.63  Aligned_cols=220  Identities=18%  Similarity=0.125  Sum_probs=165.6

Q ss_pred             HhhhcccCCCceEEEeC-C---CCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348           33 LFRNSASYSSKLALIDA-D---SDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (342)
Q Consensus        33 l~~~~~~~p~~~a~~~~-~---~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  107 (342)
                      +...++++|+++|++.. +   +++++||+|+.++++++|+.|++ .|+++||+|+|+++|+++++++++||+++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            35567789999999743 2   23479999999999999999998 7999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCC
Q 019348          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV  187 (342)
Q Consensus       108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (342)
                      |++             .+++++++++++........ ...+.+.......... .....++..|.+......  ......
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~  144 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAAGS-GEVVALSLDPLGRRVA-GELPPGVIDFAPEVRVHG--DQFAPY  144 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhcccC-CceEEEeccccccCCC-CCCCCcccchhhhhhccC--CCCCCC
Confidence            995             67899999998877764422 2222221100000000 011223345666554322  111112


Q ss_pred             -CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          188 -SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       188 -~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                       ...++|++.|+||||+         +|.+++...      ...+++++|+++ .+|++|.+|+...++.+|..|+++++
T Consensus       145 ~~~~~~D~a~l~yTsg~---------~~~~~~~~~------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~  208 (227)
T TIGR03089       145 EPPDATAPALVAGGGEW---------TGAELVAAA------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVL  208 (227)
T ss_pred             CCCCCCcceeeeccccc---------cHHHHHHHH------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEE
Confidence             3456899999999985         666665552      344567899999 99999999997789999999999999


Q ss_pred             ccCCCHHHHHHHHHhccce
Q 019348          267 MGKFDIEMALRAIEKYRVT  285 (342)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~t  285 (342)
                      .++|++..+++.|+++|||
T Consensus       209 ~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       209 VTHPDPARLDQIAETERVT  227 (227)
T ss_pred             ecCCCHHHHHHHHHhhcCC
Confidence            9999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=4.5e-27  Score=224.50  Aligned_cols=287  Identities=21%  Similarity=0.292  Sum_probs=232.8

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.+.|.+.+...|++.|+.+.  +..+||+++..+++++|+.|.+.|+++++.|+++.+.+.++++.++|++++|+.+
T Consensus       227 ~~i~~~f~~~a~~~p~~~a~~~~--~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~y  304 (642)
T COG1020         227 LTIHLLFEEQAATTPDAVALVRG--GQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAY  304 (642)
T ss_pred             chHHHHHHHHHHhCCCceeEecC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeE
Confidence            68999999999999999999987  8899999999999999999999999999999999988999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|++|..+.+++..+++..++..+++.............  +..+..                    ......  .....
T Consensus       305 vP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------~~~~~~--~~~~~  360 (642)
T COG1020         305 VPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDDA--------------------LSEIPD--TDPIP  360 (642)
T ss_pred             ecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--cccccc--------------------cccCCc--cCccc
Confidence            999999999999999999999999998333221111111  111110                    000000  11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....+++.++++|||||||.||||..+|+++.+....  ....+....+|+++...++.+.... ..++.++..|+++++
T Consensus       361 ~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~--~~~~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~~  437 (642)
T COG1020         361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLND--AGARFGLDADDRVLALASLSFDASV-FEIFGALLEGARLVL  437 (642)
T ss_pred             ccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHH--HHHhcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEEe
Confidence            2345589999999999999999999999999985333  4444667788999999999888777 889999999999999


Q ss_pred             ccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc--cCCCCceEEEeecccCCHHHHHHHHHhCC-CCcccc
Q 019348          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQ  340 (342)
Q Consensus       267 ~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~l~~  340 (342)
                      .+.   .++..+.+.+.++++|++..+|.++..+........  .....+|.+++||+.++..+.+++....+ ...+.+
T Consensus       438 ~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~  517 (642)
T COG1020         438 APALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLN  517 (642)
T ss_pred             cCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEee
Confidence            864   589999999999999999999999999988732222  22345999999999999999999988764 356666


Q ss_pred             cC
Q 019348          341 KI  342 (342)
Q Consensus       341 ~Y  342 (342)
                      .|
T Consensus       518 ~y  519 (642)
T COG1020         518 LY  519 (642)
T ss_pred             cc
Confidence            65

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.82  E-value=8.8e-19  Score=162.98  Aligned_cols=294  Identities=15%  Similarity=0.193  Sum_probs=218.5

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIA  101 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~  101 (342)
                      .+|.++++.+++++||.+|+...+    .+.++||++|..++.+++.+|... .+++||.|+++++++.|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            589999999999999999998543    348999999999999999999644 779999999999999999999999999


Q ss_pred             hCCeEeccCCCCCH------HHHHHHhhhcCceEEEEcccchhhhhccCC---------CeEEecCCCcccccccccccc
Q 019348          102 IGAIASTANPVYTV------SELSKQVKDSNPKLVITVPELWDKVKDLNL---------PAVLLGSKDKVSSSGLISRSS  166 (342)
Q Consensus       102 ~G~~~v~l~~~~~~------~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  166 (342)
                      +|.+++|+.|....      ..+..+++.+++.+|+++.+....++....         +.+....+          ...
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~----------~~~  919 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPK----------LPE  919 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccc----------cch
Confidence            99999999987533      567789999999999999877665543321         11111100          000


Q ss_pred             ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~  246 (342)
                      .+..-..-+....  ...++...+.+.+|++-+.--++|.--++..+|..+++.+..  ......+.+...++...+.+.
T Consensus       920 t~~k~~~~~~k~~--~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~--iKe~~~l~~~rpl~~~~~~~s  995 (1363)
T KOG3628|consen  920 TIRKRKKNIKKLN--TPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKI--IKETCQLYKSRPLLGCSSPYS  995 (1363)
T ss_pred             hhhhhhhhhhccC--CCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHH--HHHHHccccCCceEEEecCcc
Confidence            1111111111111  222334456678999999999999999999999999999877  444444566666777777777


Q ss_pred             HHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCc------eEEEe
Q 019348          247 VFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL------KLVGS  316 (342)
Q Consensus       247 ~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~l------r~~~~  316 (342)
                      ..|+..+++...++|.+.++.++    -+|..++..|.++++.-++.+-..++...+....+..+++..      -.++.
T Consensus       996 Glgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~ 1075 (1363)
T KOG3628|consen  996 GLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVP 1075 (1363)
T ss_pred             chhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeee
Confidence            78887899999999998777654    379999999999999999999999988877665444433221      33444


Q ss_pred             ecccCCHHHHHHHHHhCC
Q 019348          317 GAAPLGKELMEDCQKNIP  334 (342)
Q Consensus       317 gG~~l~~~~~~~~~~~~~  334 (342)
                      .-+.....+.+-|.++|.
T Consensus      1076 ~~~RPr~ali~sf~klfa 1093 (1363)
T KOG3628|consen 1076 AEERPRIALIASFKKLFA 1093 (1363)
T ss_pred             cCCccHHHHHHHHHHHHH
Confidence            455666677777777763

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.82  E-value=1.6e-19  Score=160.35  Aligned_cols=141  Identities=16%  Similarity=0.119  Sum_probs=116.2

Q ss_pred             CCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc--CCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC
Q 019348          192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG--ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK  269 (342)
Q Consensus       192 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~  269 (342)
                      +..++++|||||||.||+|++||+++.+.+...  ...+..  ...|++++.+|++|.+|+...++.++..|+++++.++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~  172 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAI--AKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA  172 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHH--HHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC
Confidence            568899999999999999999999998875543  233333  3346899999999999986778889999999999988


Q ss_pred             CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++..+++.++.+  |++.++|.+++.+.+..    .++++++. ++||+++++++.+++++. +...++++|
T Consensus       173 ~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~Y  237 (386)
T TIGR02372       173 APASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVY  237 (386)
T ss_pred             CChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhhee
Confidence            9999988888754  89999999999998753    35677886 678999999999999886 424688887

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.78  E-value=6.8e-18  Score=150.01  Aligned_cols=147  Identities=23%  Similarity=0.296  Sum_probs=121.1

Q ss_pred             CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE-
Q 019348          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS-  266 (342)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~-  266 (342)
                      ...++++++++|||||||.||+|+++|+++.......  ...+  ...++++...|++|.+++ ..++.++..|+++++ 
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~--~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~  105 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADAT--HDRL--GGPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVEL  105 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHH--Hhcc--CCCCeEEEECChHHHHHH-HHHHHHHHcCCeEEec
Confidence            4456899999999999999999999999998875432  2222  355788999999999998 678889999999887 


Q ss_pred             --ccCCCHHHHHHHHHhcc--ceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 --MGKFDIEMALRAIEKYR--VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 --~~~~~~~~~~~~i~~~~--~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                        ...+++..+++.+++++  .++...+|..+..++..... ..+++++|.+++||+++++.+.+++.+.  ++++++.|
T Consensus       106 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~Y  182 (358)
T PRK07824        106 DVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTY  182 (358)
T ss_pred             CcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecc
Confidence              34578999999999998  56677789888877765532 3468899999999999999999999875  48999887

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.72  E-value=7.1e-17  Score=146.50  Aligned_cols=152  Identities=18%  Similarity=0.161  Sum_probs=119.9

Q ss_pred             CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhh-hhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348          190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG  268 (342)
Q Consensus       190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  268 (342)
                      ..++++.+++||||||.||++.++|.++........ .....+...+|++++..+..+..+.....+.++..|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            456788999999999999999999999876533321 2223455678888876665443333245667888999998887


Q ss_pred             CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccC--CCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       269 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~--l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ..++..+++.|+++++|+++++|+++..|++.....+.+  ..++|.+++||+++++...+.+++.|+ +++++.|
T Consensus       153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~Y  227 (422)
T TIGR02155       153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIY  227 (422)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecc
Confidence            778899999999999999999999999888754333222  358999999999999999999999997 8999887

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.62  E-value=3.4e-15  Score=135.90  Aligned_cols=150  Identities=17%  Similarity=0.159  Sum_probs=116.5

Q ss_pred             CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh-hccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348          190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG  268 (342)
Q Consensus       190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  268 (342)
                      ..++++.+.+||||||.||+|.+||.++...+...... ...++..+|+++...+..+..+.....+.++..|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            45688999999999999999999999987664332211 12346778999998888776665345567788898876444


Q ss_pred             CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCcc--CCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       269 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .  ....++.|+++++|.+.++|+.+..|++.......  ...++|.+++||+++++...+.+++.|| +++++.|
T Consensus       164 ~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~~Y  236 (445)
T TIGR03335       164 K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWG-CEVYNTY  236 (445)
T ss_pred             c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEecC
Confidence            3  35678999999999999999988877764432222  2468999999999999999999999997 9999988

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=3.8e-15  Score=142.44  Aligned_cols=293  Identities=18%  Similarity=0.139  Sum_probs=190.0

Q ss_pred             CHHHHHhhhcccCCCceEEEeCC------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348           28 SMVHFLFRNSASYSSKLALIDAD------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~  101 (342)
                      ++...+.+.+.+.|...+..+..      .-..+||++....++.+++.|...|...|+.|++++..+.++++..++.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~  116 (1032)
T KOG1178|consen   37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA  116 (1032)
T ss_pred             chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence            45557888888888877765331      127899999999999999999999999999999999999999999999999


Q ss_pred             hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      .|..+++++|.++..++...+.+......-...+...+.........-.....        .-......|..+....   
T Consensus       117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~--------sv~~~~~~f~~~~~~~---  185 (1032)
T KOG1178|consen  117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKL--------SVETIADSFQMVLHNE---  185 (1032)
T ss_pred             cceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhcccccc--------chhhccchhhhhhccC---
Confidence            99999999999992222222222221111111111111111110000000000        0000011122121111   


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccch-hHHHHHHHHHHHHhhc
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM-FHVFGLSVILYDQLQK  260 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~  260 (342)
                      .........+++.+++.||||+||.||+|.-+|..+.+..+.  ....+..+..++.-..... ++..-. ..+...|..
T Consensus       186 ~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw--~~~~f~~t~s~~~~~~~~~~~~d~i~-~~~~~~L~~  262 (1032)
T KOG1178|consen  186 DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDW--MFTTFPPTGSDRFTFKTSVYFDDTIQ-KFIGALLFN  262 (1032)
T ss_pred             CCcceeeecccccceEeecccccccccccchhHHHHHhhhhh--ccccCCcCccchhhhhheeecccchH-HHHhhHhhc
Confidence            222333456678999999999999999999999999988333  3334444555554222222 233222 445566666


Q ss_pred             CCeEEEccCC---CHHHHHHHHHhccceEEEecHHHHHHHHcCCCCC-------------ccCCCCceEEEeecccCCHH
Q 019348          261 GNCVVSMGKF---DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR-------------KFDISSLKLVGSGAAPLGKE  324 (342)
Q Consensus       261 G~~~v~~~~~---~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------------~~~l~~lr~~~~gG~~l~~~  324 (342)
                      |+.+..+...   .+..+.+.+++++++..+.+|++++.++......             ....+.|+....+|++...+
T Consensus       263 ~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~  342 (1032)
T KOG1178|consen  263 GNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVS  342 (1032)
T ss_pred             CceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchh
Confidence            7666666432   3799999999999999999999988887765431             11234799999999999999


Q ss_pred             HHHHHHHhCC
Q 019348          325 LMEDCQKNIP  334 (342)
Q Consensus       325 ~~~~~~~~~~  334 (342)
                      +...+...+.
T Consensus       343 l~~s~~~~~~  352 (1032)
T KOG1178|consen  343 LYTSTFDLLA  352 (1032)
T ss_pred             hhhhhhhccc
Confidence            9886666553

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.25  E-value=7.8e-11  Score=103.29  Aligned_cols=153  Identities=21%  Similarity=0.173  Sum_probs=115.5

Q ss_pred             CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcc-ccCCCeEEEEccch-hHHHHHHHHHHHHhhcCCeEE
Q 019348          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      ....++...|--||||||+|+-+.+|...+...+..+...... +...+|++....-. .+..|+ ..-+++-..|++++
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~-~~~~ga~rig~~vi  164 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGL-GLHYGAERIGATVI  164 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCc-hhHHHHHhhCEEEE
Confidence            3445677779999999999999999999887765554433333 24466766554442 112222 33455555777666


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc--cCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      =.+.-+.+..+++|+.+++|++.++|+.+..|++.....+  ..-.+||.+++|+|++++...+.+.++|+ +..++.|
T Consensus       165 p~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diY  242 (438)
T COG1541         165 PISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIY  242 (438)
T ss_pred             ccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC-Cceeecc
Confidence            5555578999999999999999999999999998876663  33457999999999999999999999998 8888887

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.07  E-value=6.5e-10  Score=105.00  Aligned_cols=285  Identities=19%  Similarity=0.213  Sum_probs=197.9

Q ss_pred             CHHHHHhhhcccCCCceEEEeCCCC---cceeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHH
Q 019348           28 SMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSH-SFRHLGITKKDVVLIFAPNS--IHFPICFLGVIA  101 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~~~---~~~Ty~~l~~~~~~la~-~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~  101 (342)
                      .+...++..-..++.+.|.++-+..   ..+||..+..++.++|+ .|.+-|+.++|+|.++...+  .++++..++|..
T Consensus        95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l  174 (1363)
T KOG3628|consen   95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL  174 (1363)
T ss_pred             chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence            4556666666667778887765432   78999999999999999 67777999999999998766  799999999999


Q ss_pred             hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (342)
Q Consensus       102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (342)
                      .|.+.+|+.+..+.+++..+++.....++++.......+.....+      .       .......|....++...... 
T Consensus       175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~------~-------s~~k~v~~w~t~~~k~~~~~-  240 (1363)
T KOG3628|consen  175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSP------V-------SLAKAVAWWKTNDFKGNYTK-  240 (1363)
T ss_pred             cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCc------c-------cHHHHHHhhhcccccceeeh-
Confidence            999999999999999999999999988888875544433221100      0       00000011111111100000 


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhh----------h--------hccccCCCeEEEEccc
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA----------H--------QELVGELDHVVLCVLP  243 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----------~--------~~~~~~~~d~~~~~~p  243 (342)
                      .....+..+.. .++|-||++++|.--|++.+|+ ++.+.+.+..          .        ..+....++..+....
T Consensus       241 ~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~  318 (1363)
T KOG3628|consen  241 DKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLD  318 (1363)
T ss_pred             hhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccC
Confidence            11122333344 8999999999999999999988 5444322110          0        1111224566777777


Q ss_pred             hhHHHHHHHHHHHHhhcCCeEEEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC-----------CCccCCC
Q 019348          244 MFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-----------VRKFDIS  309 (342)
Q Consensus       244 ~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-----------~~~~~l~  309 (342)
                      ..-..|++++++.++++|.|.+.+++   +.|..+.+++.++|.+++..--..+........           ....+++
T Consensus       319 ~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~s  398 (1363)
T KOG3628|consen  319 PSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLS  398 (1363)
T ss_pred             cccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCcc
Confidence            77788998999999999999888876   678999999999999998877555544332221           1224689


Q ss_pred             CceEEEeecccCCHHHHHH
Q 019348          310 SLKLVGSGAAPLGKELMED  328 (342)
Q Consensus       310 ~lr~~~~gG~~l~~~~~~~  328 (342)
                      ++|.+.+.-..++.+.-+-
T Consensus       399 slk~C~Vtc~~vd~~~~~i  417 (1363)
T KOG3628|consen  399 SLKGCMVTCTAVDTEFQEI  417 (1363)
T ss_pred             ceeeeEEeeeecchHHHHH
Confidence            9999999998888776543

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=98.68  E-value=1.7e-07  Score=84.15  Aligned_cols=139  Identities=15%  Similarity=0.049  Sum_probs=92.2

Q ss_pred             eEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhc-cccCCCeEEEEc--cchhHHHHHHHHHHHHhhcCCe-EEEcc-
Q 019348          194 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCV--LPMFHVFGLSVILYDQLQKGNC-VVSMG-  268 (342)
Q Consensus       194 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~~~~--~p~~~~~g~~~~~~~~l~~G~~-~v~~~-  268 (342)
                      -..+..||||||.|-....+................ .+...++++...  .+. +.       +..+..... +...+ 
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~l-------y~~~~~~~~~~~~~~l  172 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NL-------YQSVNNRWISLDFFDL  172 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hH-------HHHHHhccceeeecCC
Confidence            345667999999998888887765433222212111 122333333332  221 21       222222211 22221 


Q ss_pred             CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       269 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ..+.+..++.|++++++++.+.|+.+..|++.....+.+ .+++.++++||.+++...+.+++.|| +++++.|
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~Y  244 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIY  244 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEcc
Confidence            146799999999999999999999999999865443333 47899999999999999999999998 9999988

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=96.04  E-value=0.11  Score=46.20  Aligned_cols=146  Identities=14%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhh--hhhccccCC-CeEEEEccchhHH---HH-HHHHHHHHhhcCC
Q 019348          190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS--AHQELVGEL-DHVVLCVLPMFHV---FG-LSVILYDQLQKGN  262 (342)
Q Consensus       190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~-~d~~~~~~p~~~~---~g-~~~~~~~~l~~G~  262 (342)
                      ..+++..++-||||||.|--+.+.+..+..+...+.  ......... .-.++...|-...   .+ ........+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345677889999999998656555554444422211  111122221 2233333333211   11 1022333344555


Q ss_pred             eEEEc-cCCCHHHHHHHHH----hccceEEEecHHHHHHHHcCCCCCcc--CCC-CceEEEeec------ccCC-HHHHH
Q 019348          263 CVVSM-GKFDIEMALRAIE----KYRVTVWWVVPPIILALAKNSLVRKF--DIS-SLKLVGSGA------APLG-KELME  327 (342)
Q Consensus       263 ~~v~~-~~~~~~~~~~~i~----~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~-~lr~~~~gG------~~l~-~~~~~  327 (342)
                      ...+- ..++...+...+.    +.++..+++.|.++..++...+..+.  .|+ ..+.+-.||      +.++ .++.+
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~  246 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA  246 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence            54442 2357777776664    44688899988877766654433333  333 344444444      3465 46667


Q ss_pred             HHHHhCCCC
Q 019348          328 DCQKNIPGA  336 (342)
Q Consensus       328 ~~~~~~~~~  336 (342)
                      .+.+.|| +
T Consensus       247 ~l~~~~G-v  254 (365)
T PF04443_consen  247 RLQEVFG-V  254 (365)
T ss_pred             HHHHHHC-C
Confidence            7778787 5

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.87  E-value=0.07  Score=47.86  Aligned_cols=86  Identities=15%  Similarity=0.053  Sum_probs=71.1

Q ss_pred             cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (342)
Q Consensus        53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  130 (342)
                      --+|+.|+...+..+|+.|...|..+||+|.++..-+  ..-+-..+|+.++|+.++|+.+.. -+.-..++++.+|.++
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEE
Confidence            5789999999999999999999999999998887622  223678899999999999998843 4456778999999999


Q ss_pred             EEcccchhh
Q 019348          131 ITVPELWDK  139 (342)
Q Consensus       131 i~~~~~~~~  139 (342)
                      .+.+...-.
T Consensus       187 ~~tps~~l~  195 (438)
T COG1541         187 AATPSYLLY  195 (438)
T ss_pred             EEChHHHHH
Confidence            998765443

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=92.14  E-value=1.3  Score=40.49  Aligned_cols=86  Identities=12%  Similarity=0.105  Sum_probs=65.2

Q ss_pred             cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (342)
Q Consensus        53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  130 (342)
                      -.+|..++......+++.+...|+++||++....+.+.  ......++....|+..++++... .+.+...+++.+|.++
T Consensus        93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l  171 (422)
T TIGR02155        93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII  171 (422)
T ss_pred             eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence            34677788777777778888889999999887765543  22334677889999999887654 4778899999999999


Q ss_pred             EEcccchhh
Q 019348          131 ITVPELWDK  139 (342)
Q Consensus       131 i~~~~~~~~  139 (342)
                      ++.+.....
T Consensus       172 ~~~Ps~l~~  180 (422)
T TIGR02155       172 MVTPSYMLN  180 (422)
T ss_pred             EEcHHHHHH
Confidence            988765543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=91.81  E-value=1.7  Score=40.06  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=62.0

Q ss_pred             cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (342)
Q Consensus        53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  130 (342)
                      --+|.+++...+...++.+...|+.+||++.++.+.+..  .....+++..+|+..++...   .+....+++..++.++
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            457889998888888888888899999999998876643  23456788899998877653   2345678889999988


Q ss_pred             EEcccc
Q 019348          131 ITVPEL  136 (342)
Q Consensus       131 i~~~~~  136 (342)
                      +.....
T Consensus       181 ~~~ps~  186 (445)
T TIGR03335       181 VASVFK  186 (445)
T ss_pred             EECHHH
Confidence            876543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=85.66  E-value=6.9  Score=32.27  Aligned_cols=54  Identities=19%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             HHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCc
Q 019348           72 RHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP  127 (342)
Q Consensus        72 ~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~  127 (342)
                      ...|+.++|++. ..|-..-  +...+++++..|+..+.+ +...++++-+.+++.++
T Consensus       171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v  226 (227)
T TIGR03089       171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV  226 (227)
T ss_pred             hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence            556889999999 8887763  345689999999998887 68889999988888775

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=84.30  E-value=9.8  Score=35.46  Aligned_cols=98  Identities=16%  Similarity=0.176  Sum_probs=69.5

Q ss_pred             CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348           40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN  110 (342)
Q Consensus        40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~  110 (342)
                      .++.++++...   ++    -.+|++.+...+..+...+   +++++|++....+....  +...+++++..|+..++. 
T Consensus       164 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-  239 (513)
T PRK07656        164 DPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL---GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-  239 (513)
T ss_pred             CCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh---CCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-
Confidence            34566665332   22    4688888876665554443   77889998887775433  345678899999988765 


Q ss_pred             CCCCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (342)
Q Consensus       111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  141 (342)
                      +....+.+.+.+++.++.++...+.....+.
T Consensus       240 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~  270 (513)
T PRK07656        240 PVFDPDEVFRLIETERITVLPGPPTMYNSLL  270 (513)
T ss_pred             CcCCHHHHHHHHHHhCCeEEechHHHHHHHH
Confidence            5667888999999999999988877665543

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=83.31  E-value=15  Score=34.25  Aligned_cols=85  Identities=16%  Similarity=0.184  Sum_probs=63.3

Q ss_pred             cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEE
Q 019348           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  131 (342)
Q Consensus        53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi  131 (342)
                      -.+|++.+...+.....   ..+++++|++....+....+ +...++++..|+..+..+.. +.+.+...+++.++..++
T Consensus       185 v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~  260 (521)
T PRK06187        185 VVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFF  260 (521)
T ss_pred             EEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEE
Confidence            36788888876666555   44788999988887755333 33445588889888777664 888899999999999999


Q ss_pred             Ecccchhhhh
Q 019348          132 TVPELWDKVK  141 (342)
Q Consensus       132 ~~~~~~~~~~  141 (342)
                      +.+.....+.
T Consensus       261 ~~p~~~~~l~  270 (521)
T PRK06187        261 AVPTIWQMLL  270 (521)
T ss_pred             chHHHHHHHH
Confidence            9877665543

>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG

Probab=80.12  E-value=16  Score=31.16  Aligned_cols=95  Identities=8%  Similarity=0.045  Sum_probs=58.3

Q ss_pred             CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC----CHHHHHHHhhhcCc
Q 019348           52 DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY----TVSELSKQVKDSNP  127 (342)
Q Consensus        52 ~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~----~~~~l~~~l~~~~~  127 (342)
                      +..+-.+-+ .|...+|+.|++.|    ..|..++.+......-  .+...|..+..++-..    ..+++..+++..+|
T Consensus         9 ~~~iG~GHv-~Rcl~LA~~l~~~g----~~v~f~~~~~~~~~~~--~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~   81 (279)
T TIGR03590         9 SSEIGLGHV-MRCLTLARALHAQG----AEVAFACKPLPGDLID--LLLSAGFPVYELPDESSRYDDALELINLLEEEKF   81 (279)
T ss_pred             CccccccHH-HHHHHHHHHHHHCC----CEEEEEeCCCCHHHHH--HHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCC
Confidence            444444443 46788999997754    3566666665554433  3357777766664332    24568889999999


Q ss_pred             eEEEEccc-----chhhhhccCCCeEEecCC
Q 019348          128 KLVITVPE-----LWDKVKDLNLPAVLLGSK  153 (342)
Q Consensus       128 ~~vi~~~~-----~~~~~~~~~~~~~~~~~~  153 (342)
                      +++|+|.-     ....++....+.+.+++.
T Consensus        82 d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~  112 (279)
T TIGR03590        82 DILIVDHYGLDADWEKLIKEFGRKILVIDDL  112 (279)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhCCeEEEEecC
Confidence            99999852     223333334455666543

This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-52
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-47
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		5e-25
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		7e-22
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		7e-22
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		8e-22
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		9e-22
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		5e-19
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-19
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-17
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-17
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-17
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-14
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		9e-13
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		2e-12
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-11
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		3e-11
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		4e-11
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-10
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		4e-10
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		4e-10
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		6e-10
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		7e-10
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		7e-10
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		7e-10
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		7e-10
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		8e-10
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-09
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-09
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		7e-09
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		7e-09
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		8e-09
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		9e-09
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		9e-09
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-08
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-08
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		3e-08
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		4e-08
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		9e-08
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		3e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-05
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		6e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		3e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/351 (36%), Positives = 199/351 (56%), Gaps = 21/351 (5%)
Query: 1   MEK--SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
           MEK  +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct: 35  MEKQSNNNNSDVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYS 92
Query: 59  QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
               I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct: 93  DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152
Query: 119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL 177
           +KQ K SN KL+IT     DK+K L N   V++   D                F +L + 
Sbjct: 153 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTELTQS 209
Query: 178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--- 233
           +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE   
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPN 264
Query: 234 ----LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +
Sbjct: 265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPM 324
Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           VPPI+LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + Q
Sbjct: 325 VPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 181/332 (54%), Gaps = 13/332 (3%)
Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P +    +  ++  N +++SSK  LI+  + +  +++  +    +V+  
Sbjct: 8   IFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASG 65
Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              +GI + DV+++F P+S  F + FLG    GAI + ANP  T +EL+K  K S  KL+
Sbjct: 66  LNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLL 125
Query: 131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
           IT    ++KVKD          +                 F +L +      + P V + 
Sbjct: 126 ITQACYYEKVKDF-------ARESDVKVMCVDSAPDGCLHFSELTQ--ADENEAPQVDIS 176
Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVF 248
             D  AL YSSGTTG+ KGV+LTHK  I   A  +   +  L    + V+LCVLPMFH++
Sbjct: 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIY 236
Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
            L+ I+   L+ G  ++ M KF+I   L  IEKY+V++  VVPP+++++AK+  + K D+
Sbjct: 237 ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDL 296
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           SSL+++ SG APLGKEL +  +   P A + Q
Sbjct: 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ 328

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 160/339 (47%), Gaps = 35/339 (10%)
Query: 17  PPLV-LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG 75
           PP   L    +   +H   +  A     +A  DA ++ ++++S++  +  +++ + +  G
Sbjct: 46  PPFYPLEDGTAGEQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYG 105
Query: 76  ITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
           +  +  + + + NS+ F  P+C  G + IG   +  N +Y   EL   +  S P +V   
Sbjct: 106 LGLQHHIAVCSENSLQFFMPVC--GALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCS 163
Query: 134 PELWDKVKDLN--LPA----VLLGSKDXXXXXXXXXXXXXXXXFHDLIE--LSGSVTD-- 183
                K+  +   LP     V+L S++                 +  IE  L     +  
Sbjct: 164 KRALQKILGVQKKLPIIQKIVILDSREDYMGKQS---------MYSFIESHLPAGFNEYD 214
Query: 184 -IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN----FIAASLMISAHQELVGELDHVV 238
            IPD   ++T  A ++ SSG+TG+ KGV LTHKN    F      +  +Q +    D  +
Sbjct: 215 YIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIP---DTAI 271
Query: 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
           L V+P  H FG+   L   L  G  +V M +F+ E+ LR+++ Y++    +VP +    A
Sbjct: 272 LTVIPFHHGFGMFTTL-GYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 330
Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN--IPG 335
           K++LV K+D+S+L  + SG APL KE+ E   K   +PG
Sbjct: 331 KSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPG 369

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 149/319 (46%), Gaps = 18/319 (5%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 29  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSE 88
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN  Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 89  NSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 204
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+    A     A   + G     D  +L V+P  H FG+   L   L
Sbjct: 205 GSTGLPKGVALPHRAL--AVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTL-GYL 261
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +   LAK++L+ K+D+S+L  + SG 
Sbjct: 262 ISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGG 321
Query: 319 APLGKELMEDCQK--NIPG 335
           APL KE+ E   K  ++PG
Sbjct: 322 APLSKEVGEAVAKRFHLPG 340

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 18/319 (5%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 84  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 199
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 200 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 256
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 257 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
Query: 319 APLGKELMEDCQK--NIPG 335
           APL KE+ E   K  ++PG
Sbjct: 317 APLSKEVGEAVAKRFHLPG 335

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 18/319 (5%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 84  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 199
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 200 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 256
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 257 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
Query: 319 APLGKELMEDCQK--NIPG 335
           APL KE+ E   K  ++PG
Sbjct: 317 APLSKEVGEAVAKRFHLPG 335

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 18/319 (5%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 29  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 88
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 89  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 204
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 205 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 261
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 262 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 321
Query: 319 APLGKELMEDCQK--NIPG 335
           APL KE+ E   K  ++PG
Sbjct: 322 APLSKEVGEAVAKRFHLPG 340

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 29/306 (9%)
Query: 30  VHFLFRNSASYSSKL-ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           + ++ R  A+ S +L A ++  +D  ++++Q  ++  + +     LGI K D V +  PN
Sbjct: 18  IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 77
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+ F   F G   +GA+A   N      E+S  + DS  K+VI                 
Sbjct: 78  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----------------- 120
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLI-------ELSGSVTDIPDVSVKQTDAAALLYSS 201
             G+                    D I        L  +  D P V     D   ++Y+S
Sbjct: 121 -YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTS 179
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++  + +G
Sbjct: 180 GTTGHPKGVVHTHESVHSAASSWASTIDV--RYRDRLLLPLPMFHVAALTTVIFSAM-RG 236
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++SM +FD       I + RV +   VP I+  + +     + D    +   +G AP+
Sbjct: 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 296
Query: 322 GKELME 327
            + L++
Sbjct: 297 PEALIK 302

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 29/306 (9%)
Query: 30  VHFLFRNSASYSSKL-ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           + ++ R  A+ S +L A ++  +D  ++++Q  ++  + +     LGI K D V +  PN
Sbjct: 4   IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 63
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+ F   F G   +GA+A   N      E+S  + DS  K+VI                 
Sbjct: 64  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----------------- 106
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLI-------ELSGSVTDIPDVSVKQTDAAALLYSS 201
             G+                    D I        L  +  D P V     D   ++Y+S
Sbjct: 107 -YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTS 165
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++  + +G
Sbjct: 166 GTTGHPKGVVHTHESVHSAASSWASTIDV--RYRDRLLLPLPMFHVAALTTVIFSAM-RG 222
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++SM +FD       I + RV +   VP I+  + +     + D    +   +G AP+
Sbjct: 223 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 282
Query: 322 GKELME 327
            + L++
Sbjct: 283 PEALIK 288

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 12/300 (4%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKNFIA-- 219
                  F       G   +    V V + +  AL + SSG+TG+ KGV LTH+N +   
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 220 --ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 12/300 (4%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKNFIA-- 219
                  F       G   +    V V + +  AL + SSG+TG+ KGV LTH+N +   
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 220 --ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 12/300 (4%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKNFIA-- 219
                  F       G   +    V V + +  AL + SSG+TG+ KGV LTH+N +   
Sbjct: 162 GYQCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 220 --ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 133/320 (41%), Gaps = 31/320 (9%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITK 78
           P  S+   +   +  +  K A+I A+        ES +F +   +  K++      G+ K
Sbjct: 17  PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRK 76
Query: 79  KDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD 138
            + V +  PNSI +      +  + A     NP Y   EL   + DS    ++    L++
Sbjct: 77  GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 139 KVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL--SGSVTDIPDVSVK-QTDAA 195
                N   VL                      + L E+  SGS  D  +V V  + D A
Sbjct: 137 -----NFKPVL-------EKTGVERVFVVGGEVNSLSEVXDSGS-EDFENVKVNPEEDVA 183
Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV--FGLSVI 253
            + Y+ GTTG  KGV LTH N  A +L ++    L    D +V C  P FH   FGL  +
Sbjct: 184 LIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGL-SHXDTIVGCX-PXFHSAEFGLVNL 241
Query: 254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
               +  GN  V  G F+ E     IEKY+ T  W VPP +  L     S  + +D S L
Sbjct: 242 ---XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYL 298
Query: 312 KLVGSGAAPLGKELMEDCQK 331
           K+  +GA P+   L+E   K
Sbjct: 299 KVFATGAWPVAPALVEKLLK 318

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 120/287 (41%), Gaps = 32/287 (11%)
Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           KLA+  A  D+ +S+++  +   +V++     G+   D V      S+   + +L  +  
Sbjct: 18  KLAIETAAGDK-ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRA 76
Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXX 162
           G +    N  YT+ EL   + D+ PK+V+  P   D +  +   A  +G+          
Sbjct: 77  GGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI---AAKVGATVETLGP--- 130
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                        +  GS+TD           +     D AA+LY+SGTTG SKG  L+H
Sbjct: 131 -------------DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L      + + KFD + 
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDK 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            L      R TV   VP     L ++  + K      +L  SG+APL
Sbjct: 236 ILDLXA--RATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPL 280

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 24/312 (7%)
Query: 36  NSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95
            +A Y  ++A+   ++    S+ +  +   +++  F+ LGI +KD V++  PN   F   
Sbjct: 34  RAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 96  FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDX 155
              +  +GA+   A P +  SE++   + +     I +P   D     +  ++    +  
Sbjct: 92  IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQVQSK 147
Query: 156 XXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
                          F  L +L      +P+V  K +D A L  S G+TG+SK +  TH 
Sbjct: 148 LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHD 205
Query: 216 NFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCVVSMG 268
           ++I  SL  S     V  LDH  V L  LPM H + LS      +LY     G  VV   
Sbjct: 206 DYIY-SLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY----AGGRVVLSP 257
Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
               + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E    
Sbjct: 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARR 317
Query: 329 CQKNIPGATIFQ 340
             K + G T+ Q
Sbjct: 318 V-KAVFGCTLQQ 328

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 145/315 (46%), Gaps = 22/315 (6%)
Query: 27  FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86
            S+  +L++ +      +A+ D    ES ++   +++  + S   + L   ++  V ++ 
Sbjct: 1   MSLDFWLYKQAQQNGHHIAITDGQ--ESYTY---QNLYCEASLLAKRLKAYQQSRVGLYI 55
Query: 87  PNSIHFPI----CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI-TVPELWDKVK 141
            NSI   I    C+L  I I  I +   P    +E++ Q++  + +L+  T+P      +
Sbjct: 56  DNSIQSIILIHACWLANIEIAMINTRLTP----NEMTNQMRSIDVQLIFCTLPLELRGFQ 111
Query: 142 DLNLPAVLLGSKDXXXXXXXXXXX-XXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYS 200
            ++L  +    +D                  ++ +    S ++I + S    D A+++++
Sbjct: 112 IVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFT 171
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260
           SGTTG  K V  T +N  A++  I   + L  + D   L VLP++H+ GLSV+L   ++ 
Sbjct: 172 SGTTGPQKAVPQTFRNHYASA--IGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIE- 228
Query: 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320
           G  V  + KF+ E  L  I+  R+T   +VP  +  L +  L   +++  + L   G A 
Sbjct: 229 GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILL---GGAK 285
Query: 321 LGKELMEDC-QKNIP 334
           L   ++E   Q N+P
Sbjct: 286 LSATMIETALQYNLP 300

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 134/312 (42%), Gaps = 24/312 (7%)
Query: 36  NSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95
            +A Y  ++A+   ++    S+ +  +   +++  F+ LGI +KD V++  PN   F   
Sbjct: 34  RAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 96  FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDX 155
              +  +GA+   A P +  SE++   + +     I +P   D     +  ++    +  
Sbjct: 92  IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQVQSK 147
Query: 156 XXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
                          F  L +L      +P+V  K +D A L  S G+TG+SK +  TH 
Sbjct: 148 LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHD 205
Query: 216 NFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCVVSMG 268
           ++I  SL  S     V  LDH  V L  LP  H + LS      +LY     G  VV   
Sbjct: 206 DYI-YSLKRSVE---VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLY----AGGRVVLSP 257
Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
               + A   IE+ +VT+  +VPP+       +  R+ D+SSL+++  G A    E    
Sbjct: 258 SPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARR 317
Query: 329 CQKNIPGATIFQ 340
             K + G T+ Q
Sbjct: 318 V-KAVFGCTLQQ 328

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 134/319 (42%), Gaps = 11/319 (3%)
Query: 13  RSLRPPLVLPSDPS--FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           ++  PP      P   F+   +LFR + + + K A ID     S ++ + +    + + +
Sbjct: 7   KAANPPAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTG--STTYGELEERARRFASA 64
Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
            R LG+  ++ +L+   +++  P+ FLG +  G +   AN + T ++    +  S+ + V
Sbjct: 65  LRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124
Query: 131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
           I    L   V      A   G +                 F +LI+ +            
Sbjct: 125 IASGALVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCD 183
Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             D A  LYSSG+TG  KG + TH N    + + +     + E D VV     +F  +GL
Sbjct: 184 --DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND-VVFSAAKLFFAYGL 240
Query: 251 SVILYDQLQKGNCVVSMGKFDIEMALRA-IEKYRVTVWWVVPPIIL-ALAKNSLVRKFDI 308
              L   L  G   + M +     A+ A + ++R TV++ VP +    L   +L  + D+
Sbjct: 241 GNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADV 300
Query: 309 SSLKLVGSGAAPLGKELME 327
            ++++  S    L +E+ E
Sbjct: 301 -AIRICTSAGEALPREIGE 318

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 39/287 (13%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            L  +   R TV   VP     L ++  +       ++L  SG+APL
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPL 280

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 39/287 (13%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            L  +   R TV   VP     L ++  +       ++L  SG+APL
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPL 280

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 115/287 (40%), Gaps = 39/287 (13%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP---------- 130
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                        +  GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 131 -------------DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            L  +   R TV   VP     L ++  +       ++L  SG+APL
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPL 280

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 117/301 (38%), Gaps = 13/301 (4%)
Query: 24  DPSFSMVHFLFRNSASYSSKLALIDADSDE--SLSFSQFKSIVIKVSHSFRHLGITKKDV 81
           D   ++  FL R +A +  K  +    + E    ++++      ++    R LG+   D 
Sbjct: 15  DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDR 74
Query: 82  VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141
           V     N       +  V  +GA+  TANP  +  E++  +  +  K+++  P L   V+
Sbjct: 75  VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134
Query: 142 DLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
            +         +                 +    E  G   D   V V +  A  + Y++
Sbjct: 135 AIR-------GELKTVQHFVVMDEKAPEGYLAYEEALGEEAD--PVRVPERAACGMAYTT 185
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV    +     L   
Sbjct: 186 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 245
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK--LVGSGAA 319
             V+   + D    +   +   VT    VP + LALA         + +L+  +VG  AA
Sbjct: 246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 305
Query: 320 P 320
           P
Sbjct: 306 P 306

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 127/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++  + DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 29/299 (9%)
Query: 39  SYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG 98
           S+   LA+I  +    LS+ +   +   ++      G+ K D  L+  PN   F I F  
Sbjct: 42  SHPHSLAIICGE--RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99
Query: 99  VIAIGAIASTANPVYTVSELSKQVKDSNPKLVI--------TVPELWDKVKDLNL-PAVL 149
           ++  G +   A   +   EL+  +K   PKL+I        +  +  D + D+NL P ++
Sbjct: 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEII 159
Query: 150 LGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLY-SSGTTGVSK 208
           L                      D IE         D S    D  A    S G+TG  K
Sbjct: 160 L----------MLNHQATDFGLLDWIETPAET--FVDFSSTPADEVAFFQLSGGSTGTPK 207
Query: 209 GVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVS 266
            +  TH ++      + A  E+ G   +  +LC LP  H F LS       L  G CVV 
Sbjct: 208 LIPRTHNDY---DYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264
Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
               +       I++++V +  +VP  ++   + +   K  I SLKL+  G A   + L
Sbjct: 265 APNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESL 323

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 124/309 (40%), Gaps = 16/309 (5%)
Query: 26  SFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVV 82
           ++ +V    R+S     KLA+I   D  +++  +F   K    K ++ F   GI K D V
Sbjct: 58  AYDVVDVYARDSPE---KLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYV 114
Query: 83  LIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142
           ++   +   F  C LG+  +GAIA  A  +    ++  +++ +  K+++ + E  D  + 
Sbjct: 115 MLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAED-DVPEQ 173
Query: 143 LNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP--DVSVKQTDAAALLYS 200
           ++      G                   F   +E S  + + P  +VS K  D   + +S
Sbjct: 174 VDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFS 233
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260
           SGT G  K  ++ H N      +++A      E D +   V        +   LY Q   
Sbjct: 234 SGTAGFPK--MVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA 291
Query: 261 GNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSG 317
           G C V      +F+ +  L    KY VT +   P I   L K  L   ++ S+LK     
Sbjct: 292 G-CAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSH-YNFSTLKYAVVA 349
Query: 318 AAPLGKELM 326
             PL  E+ 
Sbjct: 350 GEPLNPEVF 358

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 22/289 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
             + ALA  +        + SL+ V    A +   ++E   +++PG  +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 22/289 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
             + ALA  +        + SL+ V    A +   ++E   +++PG  +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 22/289 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
             + ALA  +        + SL+ V    A +   ++E   +++PG  +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 22/289 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
             + ALA  +        + SL+ V    A +   ++E   +++PG  +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 22/289 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
             + ALA  +        + SL+ V    A +   ++E   +++PG  +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 8/143 (5%)
Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 243
           +P+      D A ++Y+SGTTG  KG ++  +        ++   +  GE   V++  LP
Sbjct: 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGE--DVLVQGLP 204
Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN--- 300
           +FHV GL + +   L++G  V  +G+F  E A R +     T+ + VP +   +A+    
Sbjct: 205 LFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHRIAETLPA 263
Query: 301 --SLVRKFDISSLKLVGSGAAPL 321
              L +    + L + GS A P+
Sbjct: 264 DPELAKALAGARLLVSGSAALPV 286

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 25/316 (7%)
Query: 27  FSMVHFLFRNSASYSSKLA-LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85
           F++     RN+A +  + A ++D      L+   + +   +++      G+   D V I 
Sbjct: 6   FTLADVYRRNAALFPDRTAFMVDG---VRLTHRDYLARAERLASGLLRDGVHTGDRVAIL 62
Query: 86  APNSIHFPICFLGVIA-IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
           + N     I  +G +A IGAI    N      E++  + D  P +V+   +  D V  + 
Sbjct: 63  SQNCSEM-IELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV- 120
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
           LP+ L G K                 F DL     S T          D   +++++   
Sbjct: 121 LPS-LGGVK---KAYAIGDGSGPFAPFKDL----ASDTPFSAPEFGAADGFVIIHTAAVG 172
Query: 205 GVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           G  +G +++  N  IA S ++ A +  + E D V L +LP+FHV GL ++L  Q Q G  
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWR--LTEAD-VNLGMLPLFHVTGLGLMLTLQ-QAGGA 228
Query: 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
            V   KFD   A R IE ++VTV     P++  +   +   +  ++SL+ V     P   
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ--LASLRAVTGLDTP--- 283
Query: 324 ELMEDCQKNIPGATIF 339
           E +E  +   P AT +
Sbjct: 284 ETIERFEATCPNATFW 299

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 28/296 (9%)
Query: 54  SLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           S+++ +    V +V+    + +G+ K D V ++ P      I  L +  IGAI S     
Sbjct: 113 SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG 172
Query: 113 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV----LLGSKDXXXXXXXXXXXXXX 168
           ++ + L  ++ D + K+VIT  E     K +    +    L  +                
Sbjct: 173 FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS 232
Query: 169 XXFHDLIELSGSV------TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
             FH   +L  +       T  P   V   D   LLY+SG+TG  KGV  +   ++  +L
Sbjct: 233 VAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGAL 292
Query: 223 M-----ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFDIE 273
           +        HQE       V      +  + G + ++Y  L  G   +    +    +  
Sbjct: 293 LTMRYTFDTHQE------DVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYS 346
Query: 274 MALRAIEKYRVTVWWVVPPI--ILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
                I++++VT ++V P    +L  A +S +    + SL+ +GS   P+  E+ E
Sbjct: 347 RYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWE 402

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 115/289 (39%), Gaps = 22/289 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K                 +     AV+   +                   DL
Sbjct: 90  SAELAELIK-----------------RGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L  S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL + P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338
             + ALA  +        + SL+ V    A     ++E   +++PG  +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV 301

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 20/166 (12%)
Query: 51  SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
           S ++LS+ +      +++   +  G  K  VV ++   S+   I  LGV+  GA     +
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVD 545
Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXX 170
           P      +S  + DS    ++T  E+ ++  +L      L                    
Sbjct: 546 PKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTL-------------------F 586
Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN 216
             D        +D P  ++   D A ++Y+SGTTG  KG I TH N
Sbjct: 587 IDDQTRFEEQASD-PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 117/307 (38%), Gaps = 54/307 (17%)
Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKD-VVLIFAPNSIHFPI--CFLGVIA 101
             ++ + +E+ ++ Q       ++ + +  G    D V+L+FAP     P+   FLG + 
Sbjct: 31  TFLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG---LPLIQAFLGCLY 87
Query: 102 IGAIASTANPVYTVSELSKQ---VKDSNPKLVI---------TVPELWDKVKDLNLPAVL 149
            G IA    P      L K    V +S P +V+         T  EL    K L +PA+ 
Sbjct: 88  AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIA 147
Query: 150 LGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
           L S                      IEL+ S +  P  S+K  D A L Y+SG+T   KG
Sbjct: 148 LES----------------------IELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKG 184
Query: 210 VILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267
           V ++H N +     +  S H       + ++   LP  H  GL   +   +  G   +  
Sbjct: 185 VXVSHHNLLDNLNKIFTSFHX----NDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXX 240
Query: 268 GKFDIEMA----LRAIEKYRVTVWW---VVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320
             F         L+ I KY+ T+           +   +       D+SS     +GA P
Sbjct: 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300
Query: 321 LGKELME 327
           + +E  E
Sbjct: 301 VREETXE 307

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 186 DVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 242
           DV++++    D A L Y+SG+T   +GVI+TH+  + A+L   +H  +        +  L
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHRE-VXANLRAISHDGIKLRPGDRCVSWL 224
Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA 298
           P +H  GL   L   +     V  +   D        L+ I K R TV  V PP    L 
Sbjct: 225 PFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTV-SVAPPFGYELC 283
Query: 299 KNSLVRK----FDISSLKLVGSGAAPLGKELM 326
           +  +  K     D+S  ++ G GA P+  E +
Sbjct: 284 QRRVNEKDLAELDLSCWRVAGIGAEPISAEQL 315

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 117/310 (37%), Gaps = 33/310 (10%)
Query: 29  MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           +   L R++AS S  +A+ID +    LS+ +       ++ S R  GI   +  L+   N
Sbjct: 29  LTDILTRHAASDS--IAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGN 84
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
                I F  ++ +G     A   +  SEL+       P L+I      D+   L     
Sbjct: 85  VAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIA-----DRQHALFSGDD 139
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLIE-LSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
            L +                   H+L + ++    D         + A    S GTTG  
Sbjct: 140 FLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTP 199
Query: 208 KGVILTHKNF---IAASLMISAHQELVGELDHVVLCVLPMFHVFGLS------VILYDQL 258
           K +  TH ++   +  S+ I    +         LC +P  H + +S      V L    
Sbjct: 200 KLIPRTHNDYYYSVRRSVEICQFTQQT-----RYLCAIPAAHNYAMSSPGSLGVFL---- 250
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR---KFDISSLKLVG 315
             G  VV        +    IEK++V V  +VPP + +L   +L+    +  ++SLKL+ 
Sbjct: 251 -AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-SLWLQALIEGESRAQLASLKLLQ 308
Query: 316 SGAAPLGKEL 325
            G A L   L
Sbjct: 309 VGGARLSATL 318

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 116/305 (38%), Gaps = 42/305 (13%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P    +H LF    S       I  + +E L++ +      +++  F   GI K  +V I
Sbjct: 36  PRDKTIHQLFEEQVSKRPNNVAIVCE-NEQLTYHELNVKANQLARIFIEKGIGKDTLVGI 94
Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
               SI   I  L V+  G      +  Y    +   + DS  ++++T   L   + ++ 
Sbjct: 95  MMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ 154
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGT 203
               +                       D I++  G+   +P    K TD A ++Y+SGT
Sbjct: 155 FNGQV------------------EIFEEDTIKIREGTNLHVPS---KSTDLAYVIYTSGT 193
Query: 204 TGVSKGVILTHKN------FIAASLMISAHQELVGELDHVVL--CVLPMFHVFGLSVILY 255
           TG  KG +L HK       F   SL ++  ++ +G+   +     V  MF        LY
Sbjct: 194 TGNPKGTMLEHKGISNLKVFFENSLNVT-EKDRIGQFASISFDASVWEMFMALLTGASLY 252
Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             L+  + +    KF+     + I +  +TV  + P  ++ L      R   I +L   G
Sbjct: 253 IILK--DTINDFVKFE-----QYINQKEITVITLPPTYVVHLDPE---RILSIQTLITAG 302
Query: 316 SGAAP 320
           S  +P
Sbjct: 303 SATSP 307

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-127
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-126
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-118
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-116
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-107
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	9e-74
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-73
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-73
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	8e-71
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	6e-68
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-66
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-62
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-62
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	9e-62
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-58
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-44
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	4e-35
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	5e-35
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-31
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-31
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-24
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	9e-20
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-13
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-13
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	6e-13
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-12
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	9e-11
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	4e-09
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-08
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	7e-07
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	6e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  373 bits (960), Expect = e-127
 Identities = 112/338 (33%), Positives = 185/338 (54%), Gaps = 21/338 (6%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           + I+RS  P + +P +    +  ++  N +++SSK  LI+  + +  +++  +    +V+
Sbjct: 6   EFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVA 63

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                +GI + DV+++F P+S  F + FLG    GAI + ANP  T +EL+K  K S  K
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 129 LVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           L+IT    ++KVKD     ++  + + S                + F +L +   +  + 
Sbjct: 124 LLITQACYYEKVKDFARESDVKVMCVDSA-----------PDGCLHFSELTQADEN--EA 170

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL--DHVVLCVL 242
           P V +   D  AL YSSGTTG+ KGV+LTHK  I +                + V+LCVL
Sbjct: 171 PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVL 230

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           PMFH++ L+ I+   L+ G  ++ M KF+I   L  IEKY+V++  VVPP+++++AK+  
Sbjct: 231 PMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD 290

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           + K D+SSL+++ SG APLGKEL +  +   P A + Q
Sbjct: 291 LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ 328

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  384 bits (988), Expect = e-126
 Identities = 120/346 (34%), Positives = 193/346 (55%), Gaps = 15/346 (4%)

Query: 2   EKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
           + +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S   
Sbjct: 38  QSNNNNSDVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVH 95

Query: 62  SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
            I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E++KQ
Sbjct: 96  VISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155

Query: 122 VKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
            K SN KL+IT     DK+K L     +  V +   + V            + F +L + 
Sbjct: 156 AKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIP------EGCLRFTELTQS 209

Query: 178 SGSVTD-IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA--HQELVGEL 234
           +   ++ I  V +   D  AL YSSGTTG+ KGV+LTHK  + +        +  L    
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 269

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
           D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +VPPI+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 329

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + Q
Sbjct: 330 LAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  350 bits (900), Expect = e-118
 Identities = 80/346 (23%), Positives = 151/346 (43%), Gaps = 14/346 (4%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           ME +      I +   P   L    +   +H   +  A     +A  DA  + +++++++
Sbjct: 1   MEDA----KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY 56

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
             + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN +Y   EL  
Sbjct: 57  FEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLN 116

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE---- 176
            +  S P +V    +   K+ ++      L    K+      +      S +  +     
Sbjct: 117 SMNISQPTVVFVSKKGLQKILNV---QKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 173

Query: 177 -LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL- 234
                   +P+   +    A ++ SSG+TG+ KGV L H+                  + 
Sbjct: 174 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 233

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
           D  +L V+P  H FG+   L   L  G  VV M +F+ E+ LR+++ Y++    +VP + 
Sbjct: 234 DTAILSVVPFHHGFGMFTTLG-YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
              AK++L+ K+D+S+L  + SG APL KE+ E   K      I Q
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ 338

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  346 bits (890), Expect = e-116
 Identities = 77/340 (22%), Positives = 138/340 (40%), Gaps = 15/340 (4%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYS--SKLALIDADSDESLSFSQFKSIVIK 66
           + I    +P   +           L +    Y+    +A  +A +    S++++      
Sbjct: 8   ENIVVGPKPFYPIEEGS---AGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCC 64

Query: 67  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126
           +  + ++ G+     + + + N   F I  +  + IG   +  N +YT+ EL   +  S 
Sbjct: 65  LGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISK 124

Query: 127 PKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE----LSGSVT 182
           P +V +  +  DKV  +      + +   +                  I+         +
Sbjct: 125 PTIVFSSKKGLDKVITV---QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQAS 181

Query: 183 DIPDVSV-KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLC 240
               V V ++   A ++ SSG+TG+ KGV LTH+N +                    VL 
Sbjct: 182 SFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLT 241

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
           V+P  H FG+   L   L  G  VV + KFD E  L+ ++ Y+ T   +VP +   L K+
Sbjct: 242 VVPFHHGFGMFTTLG-YLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
            L+ K+D+S+L  + SG APL KE+ E   +      + Q
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  323 bits (831), Expect = e-107
 Identities = 85/346 (24%), Positives = 146/346 (42%), Gaps = 30/346 (8%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADS------DESLSFSQFKS 62
           +  Y+   P L  P     S+   +   +  +  K A+I A+        ES++F +   
Sbjct: 4   ELKYKIGFPSLYYPK---ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICE 60

Query: 63  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122
           +  K++      G+ K + V +  PNSI + +    +  + A     NP+Y   EL   +
Sbjct: 61  VTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHIL 120

Query: 123 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182
            DS    ++    L++  K +          +K     +     ++ S  ++++      
Sbjct: 121 NDSEATTLVVHSMLYENFKPV---------LEKTGVERVFVVGGEVNSLSEVMDSGSEDF 171

Query: 183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 242
           +   V+  + D A + Y+ GTTG+ KGV+LTH N  A +L ++    L       ++  +
Sbjct: 172 ENVKVNP-EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH--MDTIVGCM 228

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS- 301
           PMFH     ++    +  GN  V MG F+ EM    IEKY+ T  W VPP +  L     
Sbjct: 229 PMFHSAEFGLVNL-MVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLE 287

Query: 302 -LVRKFDISSLKLVGSGAAPLGKELMEDCQK------NIPGATIFQ 340
              + +D S LK+  +GA P+   L+E   K      N P     Q
Sbjct: 288 SSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQ 333

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  235 bits (603), Expect = 9e-74
 Identities = 73/324 (22%), Positives = 137/324 (42%), Gaps = 16/324 (4%)

Query: 17  PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI 76
              V   D   ++   L + +       A ++  +D  ++++Q  ++  + +     LGI
Sbjct: 6   HHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGI 65

Query: 77  TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL 136
            K D V +  PNS+ F   F G   +GA+A   N      E+S  + DS  K+VI     
Sbjct: 66  AKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPS 125

Query: 137 WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA 196
              +  +         + +    G ++      S  +   L  +  D P V     D   
Sbjct: 126 APVIDAI---------RAQADPPGTVTDWIGADSLAER--LRSAAADEPAVECGGDDNLF 174

Query: 197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 256
           ++Y+SGTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++ 
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRY--RDRLLLPLPMFHVAALTTVIF- 231

Query: 257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS 316
              +G  ++SM +FD       I + RV +   VP I+  + +     + D    +   +
Sbjct: 232 SAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFIT 291

Query: 317 GAAPLGKELMEDCQKNIPGATIFQ 340
           G AP+ + L++          + Q
Sbjct: 292 GGAPMPEALIKIYAA--KNIEVVQ 313

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  234 bits (600), Expect = 2e-73
 Identities = 76/315 (24%), Positives = 131/315 (41%), Gaps = 20/315 (6%)

Query: 29  MVHFLF---RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85
           M   LF    +      KLA+  A   + +S+++  +   +V++     G+   D V   
Sbjct: 1   MNANLFARLFDKLDDPHKLAIETAA-GDKISYAELVARAGRVANVLVARGLQVGDRVAAQ 59

Query: 86  APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL 145
              S+   + +L  +  G +    N  YT+ EL   + D+ PK+V+  P   D +  +  
Sbjct: 60  TEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI-- 117

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
                    KV ++          S  D    +G+      +     D AA+LY+SGTTG
Sbjct: 118 -------AAKVGATVETLGPDGRGSLTDA--AAGASEAFATIDRGADDLAAILYTSGTTG 168

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
            SKG +L+H N  + SL +  +       D V++  LP++H  GL V     L     ++
Sbjct: 169 RSKGAMLSHDNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMI 226

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            + KFD +  L  +   R TV   VP     L ++  + K     ++L  SG+APL  + 
Sbjct: 227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADT 284

Query: 326 MEDCQKNIPGATIFQ 340
             +      G  + +
Sbjct: 285 HREWSA-KTGHAVLE 298

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  234 bits (600), Expect = 3e-73
 Identities = 68/317 (21%), Positives = 132/317 (41%), Gaps = 8/317 (2%)

Query: 17  PPLVLPSDPS-FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG 75
           P   + + P+ F+   +LFR + + + K A ID     S ++ + +    + + + R LG
Sbjct: 12  PAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDT--GSTTYGELEERARRFASALRTLG 69

Query: 76  ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           +  ++ +L+   +++  P+ FLG +  G +   AN + T ++    +  S+ + VI    
Sbjct: 70  VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGA 129

Query: 136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
           L   V      A   G +  + S    S       F +L  +  +       +    D A
Sbjct: 130 LVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEEL--IDAAAPAAKAAATGCDDIA 186

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
             LYSSG+TG  KG + TH N    + + +     + E D VV     +F  +GL   L 
Sbjct: 187 FWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND-VVFSAAKLFFAYGLGNGLT 245

Query: 256 DQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
             L  G   + M  +   +     + ++R TV++ VP +   +  +  +      ++++ 
Sbjct: 246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRIC 305

Query: 315 GSGAAPLGKELMEDCQK 331
            S    L +E+ E    
Sbjct: 306 TSAGEALPREIGERFTA 322

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  227 bits (582), Expect = 8e-71
 Identities = 65/315 (20%), Positives = 133/315 (42%), Gaps = 15/315 (4%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           S+  +L++ +      +A+ D    ES ++         ++     L   ++  V ++  
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDGQ--ESYTYQNLYCEASLLAK---RLKAYQQSRVGLYID 56

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
           NSI   I            +  N   T +E++ Q++  + +L+     L  +   +    
Sbjct: 57  NSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLD 116

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIEL--SGSVTDIPDVSVKQTDAAALLYSSGTTG 205
            +  +   ++++GL+  +  I        +    S ++I + S    D A+++++SGTTG
Sbjct: 117 DIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG 176

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
             K V  T +N  A+++            D   L VLP++H+ GLSV+L   + +G  V 
Sbjct: 177 PQKAVPQTFRNHYASAIGCKESLGFDR--DTNWLSVLPIYHISGLSVLLR-AVIEGFTVR 233

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            + KF+ E  L  I+  R+T   +VP  +  L +       +  +L+ +  G A L   +
Sbjct: 234 IVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ---QGLHEPYNLQKILLGGAKLSATM 290

Query: 326 MEDCQKNIPGATIFQ 340
           +E   +      I+ 
Sbjct: 291 IETALQY--NLPIYN 303

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  220 bits (563), Expect = 6e-68
 Identities = 67/318 (21%), Positives = 116/318 (36%), Gaps = 23/318 (7%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
             F++     RN+A +  + A +       L+   + +   +++      G+   D V I
Sbjct: 4   HDFTLADVYRRNAALFPDRTAFMVDG--VRLTHRDYLARAERLASGLLRDGVHTGDRVAI 61

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL- 143
            + N          V  IGAI    N      E++  + D  P +V+   +  D V  + 
Sbjct: 62  LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL 121

Query: 144 -NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            +L  V              +       F    +L+   T          D   +++++ 
Sbjct: 122 PSLGGVKK----------AYAIGDGSGPFAPFKDLASD-TPFSAPEFGAADGFVIIHTAA 170

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN 262
             G  +G +++  N + A   +     L      V L +LP+FHV GL ++L    Q G 
Sbjct: 171 VGGRPRGALISQGNLLIAQSSLVDAWRLTE--ADVNLGMLPLFHVTGLGLMLT-LQQAGG 227

Query: 263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
             V   KFD   A R IE ++VTV     P++  +          ++SL+ V     P  
Sbjct: 228 ASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ--AAPAQLASLRAVTGLDTPET 285

Query: 323 KELMEDCQKNIPGATIFQ 340
            E  E      P AT + 
Sbjct: 286 IERFEAT---CPNATFWA 300

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  215 bits (551), Expect = 3e-66
 Identities = 65/314 (20%), Positives = 120/314 (38%), Gaps = 21/314 (6%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L R +       AL        L+ ++ ++ V  V+      G+  +  V + APNS 
Sbjct: 6   EMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA 65

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV--PELWDKVKDLNLPAV 148
              I  L +  +GA+ +  NP    +EL++ +K       +     ++ D +      A 
Sbjct: 66  DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR 125

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
           ++   D V      S                    I D   +    A + Y+SGTTG+ K
Sbjct: 126 IIFLGDLVRDGEPYSYG----------------PPIEDPQREPAQPAFIFYTSGTTGLPK 169

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
             I+  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 170 AAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE 229

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELM 326
           +F    AL+ +++ +VT  +  P  + ALA           + SL+ V    A +   ++
Sbjct: 230 EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVL 289

Query: 327 EDCQKNIPGATIFQ 340
           E   +++       
Sbjct: 290 ETVHQHL-PGEKVN 302

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  207 bits (530), Expect = 1e-62
 Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 8/311 (2%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L     S+   LA+I  +    LS+ +   +   ++      G+ K D  L+  PN  
Sbjct: 34  RILTVGVQSHPHSLAIICGE--RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVA 91

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
            F I F  ++  G +   A   +   EL+  +K   PKL+I      +   +      L 
Sbjct: 92  EFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI-GSRQHEVFSNNQFIDSLH 150

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
                     +++  +      D IE + + T +   S    + A    S G+TG  K +
Sbjct: 151 DVNLSPEIILMLNHQATDFGLLDWIE-TPAETFVDFSSTPADEVAFFQLSGGSTGTPKLI 209

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK 269
             TH ++  +    +    L    +  +LC LP  H F LS       L  G CVV    
Sbjct: 210 PRTHNDYDYSVRASAEICGLNS--NTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN 267

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329
            +       I++++V +  +VP  ++   + +   K  I SLKL+  G A   + L    
Sbjct: 268 PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQV 327

Query: 330 QKNIPGATIFQ 340
            + +    + Q
Sbjct: 328 PEVL-NCKLQQ 337

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  207 bits (529), Expect = 1e-62
 Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 12/311 (3%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L   +A Y  ++A+   +     S+ +  +   +++  F+ LGI +KD V++  PN  
Sbjct: 29  DLLRDRAAKYGDRIAITCGN--THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIK 86

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
            F      +  +GA+   A P +  SE++   + +     I      D     +  ++  
Sbjct: 87  EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIP----DAYSGFDYRSLAR 142

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
             + K+ +   I  + +   F  L +L      +P+V    +D A L  S G+TG+SK +
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKS--SDVAFLQLSGGSTGLSKLI 200

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK 269
             TH ++I +         L      V L  LPM H + LS   +   L  G  VV    
Sbjct: 201 PRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS 258

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329
              + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E     
Sbjct: 259 PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV 318

Query: 330 QKNIPGATIFQ 340
           +    G T+ Q
Sbjct: 319 KAVF-GCTLQQ 328

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  206 bits (527), Expect = 9e-62
 Identities = 64/303 (21%), Positives = 105/303 (34%), Gaps = 16/303 (5%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +A+ID +    LS+ +       ++ S R  GI   +  L+   N     I F  ++ +
Sbjct: 41  SIAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS--SG 160
           G     A   +  SEL+       P L+I   +        +    L     + SS    
Sbjct: 99  GVAPVLALFSHQRSELNAYASQIEPALLIADRQH----ALFSGDDFLNTFVTEHSSIRVV 154

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            +   S   +  D   ++    D         + A    S GTTG  K +  TH ++  +
Sbjct: 155 QLLNDSGEHNLQDA--INHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS 212

Query: 221 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAI 279
                   +         LC +P  H + +S          G  VV        +    I
Sbjct: 213 VRRSVEICQFTQ--QTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLI 270

Query: 280 EKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337
           EK++V V  +VPP +     A      +  ++SLKL+  G A L   L       I G  
Sbjct: 271 EKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQ 329

Query: 338 IFQ 340
           + Q
Sbjct: 330 LQQ 332

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  195 bits (498), Expect = 2e-58
 Identities = 64/334 (19%), Positives = 125/334 (37%), Gaps = 42/334 (12%)

Query: 12  YRSLRPPLVLPSDPSFSMV--HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSH 69
           +       ++P     S +        + + + + AL     + SL++++  +     + 
Sbjct: 6   HHHHHSSGLVPRGSHMSSLFPALSPAPTGAPADRPALRF--GERSLTYAELAAAAGATAG 63

Query: 70  SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129
                 I     V ++A  ++   +  +  +  G  A   NP     EL+  + DS P L
Sbjct: 64  -----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSL 118

Query: 130 VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV 189
           V+  P       D  LP  L                        +     +   +P+   
Sbjct: 119 VLAPP-------DAELPPALGA-------------------LERVDVDVRARGAVPEDGA 152

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG 249
              D A ++Y+SGTTG  KG ++  +        ++   +  G  + V++  LP+FHV G
Sbjct: 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG--EDVLVQGLPLFHVHG 210

Query: 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--- 306
           L + +   L++G  V  +G+F  E A R +     T+ + VP +   +A+          
Sbjct: 211 LVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAK 269

Query: 307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
            ++  +L+ SG+A L     E       G  + +
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAA-ATGRRVIE 302

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  158 bits (401), Expect = 5e-44
 Identities = 49/316 (15%), Positives = 112/316 (35%), Gaps = 20/316 (6%)

Query: 31  HFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFA 86
                 +       AL   +        +F +      + ++      G+ + D V +  
Sbjct: 47  WADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106

Query: 87  PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--N 144
           P    + +  LG I  G I          +++  +++ S  K ++   E+  +V  +   
Sbjct: 107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE 166

Query: 145 LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
            P++    + K+  S         ++F  L+    + T    V     +A+A+ ++SGT+
Sbjct: 167 CPSL----RIKLLVSE--KSCDGWLNFKKLLN--EASTTHHCVETGSQEASAIYFTSGTS 218

Query: 205 GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
           G+ K    ++ +    + M +    L  +   ++  +     +  +   L +    G C 
Sbjct: 219 GLPKMAEHSYSSLGLKAKMDAGWTGL--QASDIMWTISDTGWILNILCSLMEPWALGACT 276

Query: 265 VS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
               + KFD  + L+ +  Y +      P +   L +  L   +    L+   +    L 
Sbjct: 277 FVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL-SSYKFPHLQNCVTVGESLL 335

Query: 323 KELMEDCQKNIPGATI 338
            E +E+ +    G  I
Sbjct: 336 PETLENWRAQT-GLDI 350

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  133 bits (338), Expect = 4e-35
 Identities = 62/331 (18%), Positives = 117/331 (35%), Gaps = 40/331 (12%)

Query: 14  SLRPPLVLPSDPSFSMVHFLFRNSASYSSKLAL--IDADSDESLSFSQFKSIVIKVSHSF 71
           SL+   +       S+V  +   +    +K +   ++ + +E++++ Q       ++ + 
Sbjct: 2   SLKKEYLQCQ----SLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATL 57

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY------TVSELSKQVKDS 125
           +  G    D VL+     +     FLG +  G IA    P+Y       + +  + V +S
Sbjct: 58  QAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAV---PIYPPAQEKLLDKAQRIVTNS 114

Query: 126 NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185
            P +V+ + +   K     L                       ++   +     S     
Sbjct: 115 KPVIVLMIADHIKKFTADELNTNPKF------------LKIPAIALESIELNRSSSWQPT 162

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245
            +     D A L Y+SG+T   KGV+++H N +     I     +  +   +    LP  
Sbjct: 163 SIK--SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHM-NDETIIFSW-LPPH 218

Query: 246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA--- 298
           H  GL   +   +  G   + M  F         L+ I KY+ T+    P          
Sbjct: 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISG-SPNFAYDYCVKR 277

Query: 299 -KNSLVRKFDISSLKLVGSGAAPLGKELMED 328
            +       D+SS     +GA P+ +E ME 
Sbjct: 278 IREEKKEGLDLSSWVTAFNGAEPVREETMEH 308

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  133 bits (337), Expect = 5e-35
 Identities = 69/324 (21%), Positives = 120/324 (37%), Gaps = 38/324 (11%)

Query: 35  RNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
             +     KLA+I  D     +  +F   K    K ++ F   GI K D V++   +   
Sbjct: 64  VYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD 123

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE--LWDKVKDL--NLPA 147
           F  C LG+  +GAIA  A  +    ++  +++ +  K+++ + E  + ++V +       
Sbjct: 124 FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGD 183

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTG 205
           + L    K    G        + F   +E S  + + P  +VS K  D   + +SSGT G
Sbjct: 184 IPL---KKAKVGG--DVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAG 238

Query: 206 VSKGVILTHKNFIAASLMISAHQ--ELVGEL--DHVVLCVLPMFH-----VFGLSVILYD 256
             K V   +      +  +      +    +  D +   V             +   LY 
Sbjct: 239 FPKMVEHDN------TYPLGHILTAKYWQNVEDDGLHYTV-----ADSGWGKCVWGKLYG 287

Query: 257 QLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
           Q   G  V      +F+ +  L    KY VT +   P I   L K  L   ++ S+LK  
Sbjct: 288 QWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYNFSTLKYA 346

Query: 315 GSGAAPLGKELMEDCQKNIPGATI 338
                PL  E+     +   G  +
Sbjct: 347 VVAGEPLNPEVFNRFLEFT-GIKL 369

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  122 bits (308), Expect = 2e-31
 Identities = 58/340 (17%), Positives = 110/340 (32%), Gaps = 46/340 (13%)

Query: 14  SLRPPLVLPSDPSFSMVHFLFRNSASYSSKLAL--IDADSD-----ESLSFSQFKSIVIK 66
           S   P         S+   L   +       A   +D + D      +L++SQ     + 
Sbjct: 12  SGLVPRGSHMSVR-SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLN 70

Query: 67  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY------TVSELSK 120
           V+      G +  D V+I AP  + + + FLG +  G IA    P+       T      
Sbjct: 71  VAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAV---PLSVPQGGVTDERSDS 126

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
            + DS+P  ++T     D V                            +   DL++L   
Sbjct: 127 VLSDSSPVAILTTSSAVDDVVQHVARRPGESPPS--------------IIEVDLLDLDAP 172

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS----AHQELVGELDH 236
                    +    A L Y+SG+T    GV+++H+N       +     A  + +   + 
Sbjct: 173 -NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNS 231

Query: 237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPP 292
            ++  LP +H  GL + +   +  G   V              +  +           P 
Sbjct: 232 ALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSA-APN 290

Query: 293 IILALA----KNSLVRKFDISSLKLVGSGAAPLGKELMED 328
               LA     +  +   D+ ++  + SG+  +    ++ 
Sbjct: 291 FAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKR 330

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  103 bits (259), Expect = 1e-24
 Identities = 63/316 (19%), Positives = 116/316 (36%), Gaps = 45/316 (14%)

Query: 31  HFLFRNSASYSSKLALI--DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
            FL R +A +  K  +           ++++      ++    R LG+   D V     N
Sbjct: 22  DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 81

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP 146
                  +  V  +GA+  TANP  +  E++  +  +  K+++  P L   V+ +   L 
Sbjct: 82  HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 141

Query: 147 AV----LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            V    ++  K               +++ + +        +P+       A  + Y++G
Sbjct: 142 TVQHFVVMDEKA----------PEGYLAYEEALGEEADPVRVPE-----RAACGMAYTTG 186

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV-----------FGLS 251
           TTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV            G  
Sbjct: 187 TTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK 246

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
            +L              + D    +   +   VT    VP + LALA         + +L
Sbjct: 247 QVLPGP-----------RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL 295

Query: 312 KLVGSGAAPLGKELME 327
           + +  G +   + L+ 
Sbjct: 296 RRLVVGGSAAPRSLIA 311

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 88.2 bits (218), Expect = 9e-20
 Identities = 33/207 (15%), Positives = 56/207 (27%), Gaps = 32/207 (15%)

Query: 166 SKIVSFHDLIELSGSVTDIPD--------VSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
             + + +DL + S     +            +       +  S GTTG  K V+      
Sbjct: 57  KDVKTINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWI 116

Query: 218 IA-ASLMISAHQELVGELDHVVLCVLPMF-HVFGLSVILYDQLQKGNCV----------- 264
            A  S  +S +Q   G      L  +P   H+ G           G              
Sbjct: 117 EALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKR 176

Query: 265 -VSMGKFD---------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
            +S G            ++     +    +      PP++  L K   V      SL  +
Sbjct: 177 SLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQI 236

Query: 315 GSGAAPLGKELMEDCQKNI-PGATIFQ 340
             G   L  + ++     I P      
Sbjct: 237 TLGGTELNLDEIKFIASEILPDCEFSA 263

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 38/280 (13%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
           H         +  ++++        I FLG +  G     A    +       + +  ++
Sbjct: 41  HWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGH----AYIPVDLSIPADRVQRIAEN 96

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S  KL+++   +   V DL +  V                     +  D+       T  
Sbjct: 97  SGAKLLLSATAV--TVTDLPVRIVSE------------------DNLKDIFFTHKGNTPN 136

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLP 243
           P+ +VK  +   ++Y+SG+TG  KGV +T+   +  S    A ++  +     V L   P
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV--SFTKWAVEDFNLQTGQ-VFLNQAP 193

Query: 244 MFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
               F LSV+ +Y  L  G  +           +    ++E+  + VW   P        
Sbjct: 194 F--SFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251

Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
            +   +  + ++K        L  E+     +  P ATI 
Sbjct: 252 EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIM 291

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 46/283 (16%), Positives = 92/283 (32%), Gaps = 45/283 (15%)

Query: 69  HSFRHLGITKKDV-VLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVK 123
            + +     +K   +L++     H  + FLG +  G          +       ++K ++
Sbjct: 41  AAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGH----PYIPVDLSIPSERIAKIIE 96

Query: 124 DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
            S  +L+I    L        +  V                        + +  +   + 
Sbjct: 97  SSGAELLIHAAGLSIDAVGQQIQTVSA----------------------EELLENEGGSV 134

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHK---NFIAASLMISAHQELVGELDHVVLC 240
             D  VK+ +   ++Y+SG+TG  KGV ++     +F     + +     V     + L 
Sbjct: 135 SQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDW--ICADFP--VSGGK-IFLN 189

Query: 241 VLPMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILA 296
             P    F LSV+ LY  LQ G  +           ++    ++K  + VW   P  +  
Sbjct: 190 QAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247

Query: 297 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
              +    +  +            L   + +   +  P A IF
Sbjct: 248 CLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIF 290

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 68.8 bits (169), Expect = 6e-13
 Identities = 67/322 (20%), Positives = 125/322 (38%), Gaps = 60/322 (18%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+      + A+I    D    + +S+ +    V + +++   LGI K DVV I+ P   
Sbjct: 84  RHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----- 145
              +  L    IGA+ S     ++   ++  + DS+ +LVIT  E     + + L     
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVD 203

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSF--------HDLIELSGSVTDIPDVSVKQTDAAAL 197
            A+   +   V    ++ R+   + +         DLIE   +  +    ++   D   +
Sbjct: 204 DALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFI 261

Query: 198 LYSSGTTGVSKGVI-----------LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           LY+SG+TG  KGV+            T K        +  +         +  C   +  
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKY-------VFDYHP-----GDIYWCTADVGW 309

Query: 247 VFGLSVILYDQLQKGNCVV---------SMGKF-DIEMALRAIEKYRVTVWWVVPPIILA 296
           V G S +LY  L  G   +         +  +   +      ++K++V + +  P  I A
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV------VDKHQVNILYTAPTAIRA 363

Query: 297 LAK--NSLVRKFDISSLKLVGS 316
           L    +  +   D SSL+++GS
Sbjct: 364 LMAEGDKAIEGTDRSSLRILGS 385

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 65.6 bits (161), Expect = 5e-12
 Identities = 52/299 (17%), Positives = 97/299 (32%), Gaps = 42/299 (14%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA-- 109
            E  ++ Q K     ++     L +  K  VL+F   +      F+ +   G     A  
Sbjct: 27  GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGH----AYI 82

Query: 110 --NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
             +       +   ++ + P L+I + E    ++ ++L ++                   
Sbjct: 83  PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSE----------------- 125

Query: 168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK---NFIAASLMI 224
                +  +L+    +    SVK  D   ++++SGTTG  KGV ++H    +F     MI
Sbjct: 126 ----IESAKLAEMPYE-RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNW--MI 178

Query: 225 SAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIE 280
                 V +    +L   P    F LSV+     L  G  +         D +     I 
Sbjct: 179 EDAAFDVPKQP-QMLAQPPY--SFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIA 235

Query: 281 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           +  V +W   P        +    +  + +L         L         +  P A I 
Sbjct: 236 QLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKII 294

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 51/279 (18%), Positives = 86/279 (30%), Gaps = 40/279 (14%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
              +  G  K  VV ++   S+   I  LGV+  GA    A    +P      +S  + D
Sbjct: 504 RRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA----AYLPVDPKLPEDRISYMLAD 559

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S    ++T  E+ ++  +L      L                    F D           
Sbjct: 560 SAAACLLTHQEMKEQAAELPYTGTTL--------------------FIDDQTRFEEQASD 599

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
           P  ++   D A ++Y+SGTTG  KG I TH N     L+         + D   L V   
Sbjct: 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHANI--QGLVKHVDYMAFSDQD-TFLSVSN- 655

Query: 245 FHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            + F       Y  +     ++        D E     I +  V V +    +   L   
Sbjct: 656 -YAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
                  +  L+ +  G        +    + +    + 
Sbjct: 715 GEDW---MKGLRCILFGGERASVPHVRKALRIMGPGKLI 750

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 61.7 bits (151), Expect = 9e-11
 Identities = 52/276 (18%), Positives = 94/276 (34%), Gaps = 46/276 (16%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVI-AIGA---IASTANPVYTVSELSKQVKD 124
             F   GI K  +V I    SI   I  L V+ A GA   I    +  Y    +   + D
Sbjct: 79  RIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI----DIEYPKERIQYILDD 134

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S  ++++T   L   + ++     +                       +   +       
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEIF--------------------EEDTIKIREGTN 174

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL--VGELDHVVLCVL 242
             V  K TD A ++Y+SGTTG  KG +L HK       +    +    V E D  +    
Sbjct: 175 LHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISN---LKVFFENSLNVTEKD-RIGQFA 230

Query: 243 PMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
            +   F  SV  ++  L  G  +         D     + I +  +TV  + P  ++ L 
Sbjct: 231 SI--SFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD 288

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
              +       S++ + +  +     L+   ++ + 
Sbjct: 289 PERI------LSIQTLITAGSATSPSLVNKWKEKVT 318

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 45/284 (15%), Positives = 87/284 (30%), Gaps = 43/284 (15%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
           +   H  +     + +    S+      +G++  G                   S  ++D
Sbjct: 70  NLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGN----TYVPIEAGLPNDRKSFLLRD 124

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S   +       +D V+      VL                           LS   T  
Sbjct: 125 SRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIE-----------------NLSTQDTSD 167

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP- 243
              +  +   A LLY+SG+TG  KGV ++  N  +      A  +L+G +    L +   
Sbjct: 168 ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSS---FSDAWGKLIGNVAPKSLELGGV 224

Query: 244 ----MFH--VFGLSVI-LYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIIL 295
                     F + +  ++   + G C V+  +  +   L R   +  VT   +VP    
Sbjct: 225 GKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVP---- 280

Query: 296 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           +L   + +   D   L  +G G   +     +    +     + 
Sbjct: 281 SLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSS-DRVALV 323

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 36/278 (12%), Positives = 73/278 (26%), Gaps = 45/278 (16%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
                        + ++   S     C L ++  G          +     +  ++  + 
Sbjct: 67  DYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH----HYLYIDLKQPAAWNAELCRQ 122

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
            + +L++           L  P V                         +  L  +   +
Sbjct: 123 VDCRLILDCSTTPTPANGL--PCV------------------------PVRHLPAAPASV 156

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
                     A + +SSGTTG  K +  TH       L +              L   P 
Sbjct: 157 ARPCFAADQIAYINFSSGTTGRPKAIACTHAG--ITRLCLGQSFLAFAPQM-RFLVNSP- 212

Query: 245 FHVFGLSVI-LYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
              F  + + ++  L  G C V   +G  D  +  + I +      W+   +   L    
Sbjct: 213 -LSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD 271

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
                 +  L+ + +G   L    +       P   + 
Sbjct: 272 PDC---LGGLRQLLTGGDILSVPHVRRALLRHPRLHLV 306

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 38/214 (17%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNS 89
           R++    +K A+I    +     S+++ +    V +V+    + +G+ K D V ++ P  
Sbjct: 90  RHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMV 149

Query: 90  IHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVPELWDKVKDLNL 145
               I  L +  IGAI S    V    ++ + L  ++ D + K+VIT  E     K +  
Sbjct: 150 PEAIITLLAISRIGAIHS----VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 205

Query: 146 PAVL---LGSKDKVSSSGLISRSSKI---------VSFHDLIELSGSVTDIPDVSVKQTD 193
             ++   L     V    +  +++           + +    +     T  P   V   D
Sbjct: 206 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK--KYKTYYPCTPVDSED 263

Query: 194 AAALLYSSGTTGVSKGVI-----------LTHKN 216
              LLY+SG+TG  KGV            LT + 
Sbjct: 264 PLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 279 IEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGS 316
           I++++VT ++V P  +  L +  +S +    + SL+ +GS
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGS 391

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 299 KNSLVRKFDISSLKLVGSGAAP-LG-KELME 327
           K +L +K   +SLKL    +AP L  K  ME
Sbjct: 19  KQAL-KKLQ-ASLKLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.91
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.88
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.88
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.87
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.86
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	94.53
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.9
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	93.55
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	88.4
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	88.14
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	86.9
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	86.47
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	84.55
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	83.48
3ezx_A	215	MMCP 1, monomethylamine corrinoid protein 1; N ter	82.33
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	81.4
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	81.13
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	80.05

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.2e-49  Score=370.34  Aligned_cols=321  Identities=35%  Similarity=0.595  Sum_probs=273.9

Q ss_pred             CCCceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Q 019348            7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA   86 (342)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~   86 (342)
                      .+..++.+..++.+.|..  .++.++|.++++++||++|+++.++++++||+||.++++++|+.|++.|+++||+|++++
T Consensus         4 ~~~~i~~~~~~~~~~p~~--~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~   81 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFL   81 (536)
T ss_dssp             -CCCCBCCSSCCCCCCSS--CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             ccceEEecCCCCCCCCCC--CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            455677777788888876  899999999999999999999976678999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCcccccccc
Q 019348           87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLI  162 (342)
Q Consensus        87 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  162 (342)
                      +|+++++++++||+++|++++|++|.++.+++.++++.++++++|++......+...    ....+.++..         
T Consensus        82 ~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------  152 (536)
T 3ni2_A           82 PSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSA---------  152 (536)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCC---------
T ss_pred             CCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCC---------
Confidence            999999999999999999999999999999999999999999999998776654432    3333333321         


Q ss_pred             ccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh--hccccCCCeEEEE
Q 019348          163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--QELVGELDHVVLC  240 (342)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~d~~~~  240 (342)
                        ......+.++.....  .........++++++|+|||||||.||||++||+++.+.+......  ..+....+|++++
T Consensus       153 --~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~  228 (536)
T 3ni2_A          153 --PDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILC  228 (536)
T ss_dssp             --CTTCEETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEE
T ss_pred             --CCCccCHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEE
Confidence              122344555554332  2223345678999999999999999999999999998875432211  1334678899999


Q ss_pred             ccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeeccc
Q 019348          241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP  320 (342)
Q Consensus       241 ~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~  320 (342)
                      .+|++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+++..+++.......++++||.+++||++
T Consensus       229 ~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~  308 (536)
T 3ni2_A          229 VLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAP  308 (536)
T ss_dssp             CSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSC
T ss_pred             ecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCC
Confidence            99999999996778999999999999999999999999999999999999999999999987777889999999999999


Q ss_pred             CCHHHHHHHHHhCCCCcccccC
Q 019348          321 LGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       321 l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++++.+++++.||++++++.|
T Consensus       309 l~~~~~~~~~~~~~~~~l~~~Y  330 (536)
T 3ni2_A          309 LGKELEDTVRAKFPQARLGQGY  330 (536)
T ss_dssp             CCHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCHHHHHHHHHHCCCCCccccc
Confidence            9999999999999879999987

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=8.8e-48  Score=358.43  Aligned_cols=326  Identities=24%  Similarity=0.313  Sum_probs=263.5

Q ss_pred             CCCCCCCCCceeecCCCCCCCCCCCCCCHHH-HHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCC
Q 019348            1 MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVH-FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKK   79 (342)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g   79 (342)
                      |+.....+.+++.+..++...|..  .++.+ ++.+.++++ |++|+++.+.++++||+||.++++++|+.|++.|+++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~--~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g   77 (548)
T 2d1s_A            1 MENMENDENIVVGPKPFYPIEEGS--AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVD   77 (548)
T ss_dssp             ------CTTSEECCCCSSCCCSSC--HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             CCCCCCCcceEecCCCCCCCCCCc--CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCC
Confidence            455555666777777766666654  68999 899999999 99999985447899999999999999999999999999


Q ss_pred             CEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----C--CCeEEecCC
Q 019348           80 DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N--LPAVLLGSK  153 (342)
Q Consensus        80 ~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~--~~~~~~~~~  153 (342)
                      |+|+|+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++++....+...    .  ...+.++..
T Consensus        78 d~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (548)
T 2d1s_A           78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK  157 (548)
T ss_dssp             CEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCS
T ss_pred             CEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCc
Confidence            9999999999999999999999999999999999999999999999999999998876554332    1  122222211


Q ss_pred             CccccccccccccccccHHHHHhccCCCCCCCCCCCC-----C-CCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh
Q 019348          154 DKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVK-----Q-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH  227 (342)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~  227 (342)
                      .         ...+...|.++...... .........     + +++++|+|||||||.||||++||+++.+.+...  .
T Consensus       158 ~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~--~  225 (548)
T 2d1s_A          158 V---------DYRGYQCLDTFIKRNTP-PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHA--R  225 (548)
T ss_dssp             S---------CBTTBCBHHHHHHHTSC-TTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHH--T
T ss_pred             c---------cccccccHHHHHhcCcc-ccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHh--h
Confidence            0         01123346666554321 101111122     3 899999999999999999999999998875442  2


Q ss_pred             hc---cccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCC
Q 019348          228 QE---LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR  304 (342)
Q Consensus       228 ~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~  304 (342)
                      ..   +...++|++++..|++|.+++...++.++ .|+++++.+++++..+++.++++++|+++++|++++.|.+.....
T Consensus       226 ~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  304 (548)
T 2d1s_A          226 DPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN  304 (548)
T ss_dssp             CTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG
T ss_pred             chhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccc
Confidence            22   45678899999999999999855577778 999999999999999999999999999999999999999887666


Q ss_pred             ccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          305 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       305 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      ..++++||.+++||+++++++.+++++.||++++++.|
T Consensus       305 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~Y  342 (548)
T 2d1s_A          305 KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGY  342 (548)
T ss_dssp             GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEE
T ss_pred             cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeecc
Confidence            67899999999999999999999999999778899887

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=3.6e-47  Score=354.72  Aligned_cols=323  Identities=24%  Similarity=0.362  Sum_probs=258.4

Q ss_pred             CCceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEE---eCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 019348            8 RDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI   84 (342)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~---~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i   84 (342)
                      ...++.+..++.+.+.   .|+.++|.+.++++|+++|++   +.+.++++||+||.++++++|+.|++.|+++||+|+|
T Consensus         4 ~~~~~~~~~~~~~~~~---~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   80 (550)
T 3rix_A            4 AKNIKKGPAPFYPLED---GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV   80 (550)
T ss_dssp             GGGSEECCCCSSCCCC---SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             ccceeeCCCCCCCccc---CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            3445556666555555   699999999999999999875   5545789999999999999999999999999999999


Q ss_pred             ECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----C-CCeEEecCCCccccc
Q 019348           85 FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N-LPAVLLGSKDKVSSS  159 (342)
Q Consensus        85 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~  159 (342)
                      +++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++++....+...    . ...++.....     
T Consensus        81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  155 (550)
T 3rix_A           81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----  155 (550)
T ss_dssp             ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS-----
T ss_pred             EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC-----
Confidence            99999999999999999999999999999999999999999999999998876654432    1 2223222111     


Q ss_pred             cccccccccccHHHHHhccCCCC----CC-CCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccC
Q 019348          160 GLISRSSKIVSFHDLIELSGSVT----DI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGE  233 (342)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~  233 (342)
                         ........+.++........    .. ......++++++|+|||||||.||||++||+++...+....... .....
T Consensus       156 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~  232 (550)
T 3rix_A          156 ---TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII  232 (550)
T ss_dssp             ---SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCC
T ss_pred             ---ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCC
Confidence               12233455666654432100    11 11222457899999999999999999999999988754322111 13456


Q ss_pred             CCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceE
Q 019348          234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKL  313 (342)
Q Consensus       234 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~  313 (342)
                      ++|++++.+|++|.+|+ ..++.++..|+++++.+++++..+++.++++++|+++++|+++..|++.......++++||.
T Consensus       233 ~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~  311 (550)
T 3rix_A          233 PDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHE  311 (550)
T ss_dssp             TTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCE
T ss_pred             CCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccE
Confidence            88999999999999998 77889999999999999999999999999999999999999999999988777788999999


Q ss_pred             EEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          314 VGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       314 ~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++||+++++++.++|++.|+...+++.|
T Consensus       312 i~~gG~~l~~~~~~~~~~~~~~~~v~~~Y  340 (550)
T 3rix_A          312 IASGGAPLSKEVGEAVAKRFHLPGIRQGY  340 (550)
T ss_dssp             EEECSSCCCHHHHHHHHHHTTCSCCEEEE
T ss_pred             EEEecCCCCHHHHHHHHHHcCCCcccccc
Confidence            99999999999999999999844588877

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=3.6e-47  Score=352.02  Aligned_cols=300  Identities=24%  Similarity=0.322  Sum_probs=247.7

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .|+.++|.+.++++||++|+++.+.++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus        16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   95 (517)
T 3r44_A           16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVA   95 (517)
T ss_dssp             GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEE
T ss_pred             cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            79999999999999999999998444599999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|++|.++.+++.+++++++++++|++......+.............         ........+.+......  .....
T Consensus        96 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~  164 (517)
T 3r44_A           96 VPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTV---------TDWIGADSLAERLRSAA--ADEPA  164 (517)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTC---------CEEEEHHHHHHHHHHCC--CCCCC
T ss_pred             EecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEE---------EEccCcccHHHHhhccC--cCCCC
Confidence            99999999999999999999999999987766554321000000000         00000123344443333  33334


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....++++++|+|||||||.||||++||+++.+.+..  ....+....+|++++.+|++|.+++ ...+.++..|+++++
T Consensus       165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~~~~G~~~v~  241 (517)
T 3r44_A          165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS--WASTIDVRYRDRLLLPLPMFHVAAL-TTVIFSAMRGVTLIS  241 (517)
T ss_dssp             CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHH--HHHHSCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEE
T ss_pred             CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHH--HHHhcCCCCCCEEEEeCchHHHHHH-HHHHHHHhcCeEEEE
Confidence            4567899999999999999999999999999988555  4455567889999999999999999 444444459999999


Q ss_pred             ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+.+++..+++.++++++|++.++|++++.|.+.+.....++++||.+++||+++++++.++|++.  ++++++.|
T Consensus       242 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~Y  315 (517)
T 3r44_A          242 MPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGY  315 (517)
T ss_dssp             CSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEE
T ss_pred             eCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEee
Confidence            999999999999999999999999999999999876667788999999999999999999999998  58999887

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.6e-46  Score=346.85  Aligned_cols=293  Identities=21%  Similarity=0.308  Sum_probs=241.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      +|+.++|.+.++++||++|+++.+.++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   81 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            47999999999999999999987556899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEE--cccchhhh-hccCCCeEEecCCCccccccccccccccccHHHHHhccC---C
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVIT--VPELWDKV-KDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---S  180 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  180 (342)
                      +|++|.++.+++.+++++++++++++  +.+....+ ....... .+                   .++++.....   .
T Consensus        82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~  141 (504)
T 1t5h_X           82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-II-------------------FLGDLVRDGEPYSY  141 (504)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCE-EE-------------------EGGGTEETTEECCC
T ss_pred             EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccce-eE-------------------EecchhhcCccccc
Confidence            99999999999999999999999999  76655444 3221101 11                   1111211100   0


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc--CCCeEEEEccchhHHHHHHHHHHHHh
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG--ELDHVVLCVLPMFHVFGLSVILYDQL  258 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l  258 (342)
                      ..........++++++|+|||||||.||||+++|+++.+.+...  ...+.+  ..+|++++.+|++|.+++...++.++
T Consensus       142 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~--~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l  219 (504)
T 1t5h_X          142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM--STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL  219 (504)
T ss_dssp             SCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHH--HHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHH
T ss_pred             CCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHH--HHhhCCCCCCCceEEeecchhhcchHHHHHHHHH
Confidence            01111134567899999999999999999999999998875543  333444  67899999999999999856789999


Q ss_pred             hcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCC
Q 019348          259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (342)
Q Consensus       259 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~  336 (342)
                      ..|+++++.+.+++..+++.++++++|+++++|++++.|.+...  ....++++||.+++||+++++++.++|++.+| .
T Consensus       220 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~  298 (504)
T 1t5h_X          220 ALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-G  298 (504)
T ss_dssp             HTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC-S
T ss_pred             HcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC-c
Confidence            99999999999999999999999999999999999999987652  24457899999999999999999999999998 8


Q ss_pred             cccccC
Q 019348          337 TIFQKI  342 (342)
Q Consensus       337 ~l~~~Y  342 (342)
                      ++++.|
T Consensus       299 ~~~~~Y  304 (504)
T 1t5h_X          299 EKVNIY  304 (504)
T ss_dssp             EEEEEE
T ss_pred             ceeeee
Confidence            898887

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.1e-46  Score=350.56  Aligned_cols=295  Identities=24%  Similarity=0.311  Sum_probs=247.9

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .|+.++|.+.++++||++|+++.  ++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus        25 ~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~  102 (539)
T 1mdb_A           25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (539)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence            69999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchh--------hhh-cc-CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD--------KVK-DL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (342)
                      +|++|.++.+++.++++.++++++|++++...        .+. .. ....+......           .   .+.++..
T Consensus       103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~  168 (539)
T 1mdb_A          103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-----------E---EFLPLED  168 (539)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-----------T---TSEEGGG
T ss_pred             ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc-----------c---chhhhhh
Confidence            99999999999999999999999999875421        111 11 12222222110           0   1111211


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH-HHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~  255 (342)
                      ...  .........++++++|+|||||||.||||+++|+++.+.+..  ....+.+.++|++++.+|++|.+++.. .++
T Consensus       169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~  244 (539)
T 1mdb_A          169 LHT--EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKR--SVEVCWLDHSTVYLAALPMAHNYPLSSPGVL  244 (539)
T ss_dssp             CCC--CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHH--HHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred             ccc--cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHH--HHHhhCCCCCCEEEEeecccccchhhHHHHH
Confidence            111  111223456789999999999999999999999999988554  344455678999999999999999854 689


Q ss_pred             HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      .+|..|+++++.+.+++..+++.++++++|++.++|++++.|++.......++++||.+++||+++++++.++|++.++ 
T Consensus       245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-  323 (539)
T 1mdb_A          245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-  323 (539)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-
T ss_pred             HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC-
Confidence            9999999999999999999999999999999999999999998876555668899999999999999999999999997 


Q ss_pred             CcccccC
Q 019348          336 ATIFQKI  342 (342)
Q Consensus       336 ~~l~~~Y  342 (342)
                      +++++.|
T Consensus       324 ~~~~~~Y  330 (539)
T 1mdb_A          324 CTLQQVF  330 (539)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEE
Confidence            8999887

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.6e-46  Score=370.30  Aligned_cols=325  Identities=37%  Similarity=0.608  Sum_probs=268.9

Q ss_pred             ceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Q 019348           10 GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS   89 (342)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~   89 (342)
                      .++.+..++.+.|..  .|+.++|.+.++++||++|+++.++++++||+||.++++++|+.|++.|+++||+|+|+++|+
T Consensus        46 ~~~~~~~~~~~~p~~--~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns  123 (979)
T 3tsy_A           46 VIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC  123 (979)
T ss_dssp             CCBCCSSCCCCCCTT--SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSC
T ss_pred             ceeecCCCCCCCCCC--CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCC
Confidence            345555666666665  899999999999999999999987678999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCccccccccccc
Q 019348           90 IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRS  165 (342)
Q Consensus        90 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  165 (342)
                      +++++++|||+++|++++|++|.++.+++.+++++++++++|++++....+...    ....+.++.....      ...
T Consensus       124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  197 (979)
T 3tsy_A          124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESV------PIP  197 (979)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTS------CCC
T ss_pred             HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccc------cCC
Confidence            999999999999999999999999999999999999999999998776554432    2223333321110      111


Q ss_pred             cccccHHHHHhccCCC-CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh--hccccCCCeEEEEcc
Q 019348          166 SKIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--QELVGELDHVVLCVL  242 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~d~~~~~~  242 (342)
                      .....+.++....... .........++++++|+|||||||.||||+++|+++.+.+......  ..+....+|++++.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~  277 (979)
T 3tsy_A          198 EGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVL  277 (979)
T ss_dssp             TTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECS
T ss_pred             cccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEEC
Confidence            2233444443322100 1122335678999999999999999999999999998875442211  133467899999999


Q ss_pred             chhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCC
Q 019348          243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG  322 (342)
Q Consensus       243 p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~  322 (342)
                      |++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+++..|.+.......++++||.+++||++++
T Consensus       278 p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~  357 (979)
T 3tsy_A          278 PMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLG  357 (979)
T ss_dssp             CSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCC
T ss_pred             chHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCC
Confidence            99999999677899999999999999999999999999999999999999999999988777788999999999999999


Q ss_pred             HHHHHHHHHhCCCCcccccC
Q 019348          323 KELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       323 ~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +++.+++++.||++++++.|
T Consensus       358 ~~~~~~~~~~~~~~~l~~~Y  377 (979)
T 3tsy_A          358 KELEDAVNAKFPNAKLGQGY  377 (979)
T ss_dssp             SSHHHHHHHHCTTCEEEECE
T ss_pred             HHHHHHHHHHCCCCeEEeee
Confidence            99999999999879999988

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.1e-46  Score=348.37  Aligned_cols=308  Identities=27%  Similarity=0.402  Sum_probs=256.2

Q ss_pred             cCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Q 019348           14 SLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP   87 (342)
Q Consensus        14 ~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~   87 (342)
                      ...++.+.|.   .|+.++|.+.++++||++|+++.+.+      +++||+||.++++++|+.|++.|+++||+|+|+++
T Consensus         9 ~~~p~~~~~~---~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~   85 (549)
T 3g7s_A            9 IGFPSLYYPK---ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP   85 (549)
T ss_dssp             CCCCCCCCCC---CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCCCcCC---CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence            3344444443   69999999999999999999987421      89999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCccccccccc
Q 019348           88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLIS  163 (342)
Q Consensus        88 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  163 (342)
                      |+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.....+...    ....+.+...          
T Consensus        86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------  155 (549)
T 3g7s_A           86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG----------  155 (549)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC----------
T ss_pred             CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC----------
Confidence            99999999999999999999999999999999999999999999998876655432    2222222211          


Q ss_pred             cccccccHHHHHhccCCCCCCCCCCCCC-CCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEcc
Q 019348          164 RSSKIVSFHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL  242 (342)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~  242 (342)
                         ....+.++.....  .........+ +++++|+|||||||.||||+++|+++.+.+..  ....+....+|++++.+
T Consensus       156 ---~~~~~~~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~~~~~  228 (549)
T 3g7s_A          156 ---EVNSLSEVMDSGS--EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQ--LAVATGLSHMDTIVGCM  228 (549)
T ss_dssp             ---SSSCHHHHHHHSC--SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHH--HHHHHCCCTTCEEECCS
T ss_pred             ---CCcCHHHHHhcCc--cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHH--HHHHcCCCCCCEEEEeC
Confidence               2335566665443  2222233334 89999999999999999999999999998655  44455668899999999


Q ss_pred             chhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc--cCCCCceEEEeeccc
Q 019348          243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAP  320 (342)
Q Consensus       243 p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~~~~gG~~  320 (342)
                      |++|.+++ ..++.++..|+++++.+.+++..+++.++++++|+++++|++++.|++......  .+++++|.+++||++
T Consensus       229 p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~  307 (549)
T 3g7s_A          229 PMFHSAEF-GLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWP  307 (549)
T ss_dssp             CTTSHHHH-HHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSC
T ss_pred             cHHHHHHH-HHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCcc
Confidence            99999998 558899999999999999999999999999999999999999999988754433  678999999999999


Q ss_pred             CCHHHHHHHHHh----CC--CCcccccC
Q 019348          321 LGKELMEDCQKN----IP--GATIFQKI  342 (342)
Q Consensus       321 l~~~~~~~~~~~----~~--~~~l~~~Y  342 (342)
                      +++++.+++++.    ++  ++++++.|
T Consensus       308 l~~~~~~~~~~~~~~~~~~~~~~~~~~Y  335 (549)
T 3g7s_A          308 VAPALVEKLLKLAAEKCNNPRLRHNQIW  335 (549)
T ss_dssp             CCHHHHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhcCCccccccceE
Confidence            999999999998    54  37888877

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=2.1e-46  Score=349.03  Aligned_cols=299  Identities=22%  Similarity=0.276  Sum_probs=250.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .|+.++|.+.++++||++|+++.  ++++||+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|+++
T Consensus        30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~  107 (544)
T 3o83_A           30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV  107 (544)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence            78999999999999999999998  8899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchh--------hhhcc--CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD--------KVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (342)
                      +|+++..+.+++.++++.++++++|+++....        .+...  ....+......           .....+.++..
T Consensus       108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  176 (544)
T 3o83_A          108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ-----------ATDFGLLDWIE  176 (544)
T ss_dssp             EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC-----------TTSEEHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC-----------ccccchhhhhh
Confidence            99999999999999999999999999876531        11111  12222222110           01112334443


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH-HHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~  255 (342)
                      .... .........++++++|+|||||||.||||+++|+++.+.+..  ....+.+.++|++++.+|++|.+++.. .++
T Consensus       177 ~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~  253 (544)
T 3o83_A          177 TPAE-TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRA--SAEICGLNSNTRLLCALPAPHNFMLSSPGAL  253 (544)
T ss_dssp             SCCS-SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHH--HHHHTTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred             cccc-cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHH--HHHHhCCCCCCeEEEecCcceEeecchHHHH
Confidence            3221 111223456789999999999999999999999999988655  445556788999999999999999844 589


Q ss_pred             HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      .++..|+++++.+++++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.+++++.++ 
T Consensus       254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-  332 (544)
T 3o83_A          254 GVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN-  332 (544)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC-
T ss_pred             HHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC-
Confidence            9999999999999999999999999999999999999999999887666778999999999999999999999999996 


Q ss_pred             CcccccC
Q 019348          336 ATIFQKI  342 (342)
Q Consensus       336 ~~l~~~Y  342 (342)
                      +++++.|
T Consensus       333 ~~~~~~Y  339 (544)
T 3o83_A          333 CKLQQVF  339 (544)
T ss_dssp             SEEEEEE
T ss_pred             CcEEeee
Confidence            8999887

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=3.8e-46  Score=347.04  Aligned_cols=299  Identities=21%  Similarity=0.304  Sum_probs=248.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeC--CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDA--DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~  104 (342)
                      .|+.++|.+.++++||++|+++.  +.++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+
T Consensus        18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga   97 (541)
T 1v25_A           18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA   97 (541)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            68999999999999999999952  2357999999999999999999999999999999999999999999999999999


Q ss_pred             eEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccC
Q 019348          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (342)
Q Consensus       105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (342)
                      +++|++|.++.+++.+++++++++++|++++....+....     ...+......         .......++++.....
T Consensus        98 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  168 (541)
T 1v25_A           98 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK---------APEGYLAYEEALGEEA  168 (541)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC---------CCTTCEEHHHHCCSCC
T ss_pred             EEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCC---------CCcccccHHHHhhccC
Confidence            9999999999999999999999999999987765543321     1222221110         0112334555543322


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                        .   .....++++++|+|||||||.||||++||+++...+........+.+.++|++++.+|++|.+++ ..++.++.
T Consensus       169 --~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~  242 (541)
T 1v25_A          169 --D---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATL  242 (541)
T ss_dssp             --C---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHHH
T ss_pred             --C---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHHh
Confidence              1   13445789999999999999999999999999876443222334556789999999999999998 67888999


Q ss_pred             cCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcc
Q 019348          260 KGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (342)
Q Consensus       260 ~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l  338 (342)
                      .|+++++.+. +++..+++.++++++|+++++|++++.|++.......++++||.+++||+++++++.++| +.++ +++
T Consensus       243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~  320 (541)
T 1v25_A          243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG-VEV  320 (541)
T ss_dssp             HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT-CEE
T ss_pred             cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC-Cce
Confidence            9999999864 799999999999999999999999999988765555678999999999999999999999 6675 899


Q ss_pred             cccC
Q 019348          339 FQKI  342 (342)
Q Consensus       339 ~~~Y  342 (342)
                      ++.|
T Consensus       321 ~~~Y  324 (541)
T 1v25_A          321 RQGY  324 (541)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            9987

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=3.8e-46  Score=345.11  Aligned_cols=291  Identities=17%  Similarity=0.250  Sum_probs=244.8

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      +||.++|.+.++++||++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~   78 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY   78 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            58999999999999999999998  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|++|.++.+++.++++.+++++++++......    .........                ..+.+.............
T Consensus        79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~  138 (512)
T 3fce_A           79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT----DLPVRIVSE----------------DNLKDIFFTHKGNTPNPE  138 (512)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS----CCSSEEEET----------------HHHHHHHHHTTTCCCCGG
T ss_pred             EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc----ccccceech----------------hhhhhhcccccccCCCcc
Confidence            999999999999999999999999997543211    011111110                112222221111122223


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....++++++|+|||||||.||||++||+++.+.+..  ....+....+|++++..|++|.+++ ..++.++..|+++++
T Consensus       139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~  215 (512)
T 3fce_A          139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW--AVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWA  215 (512)
T ss_dssp             GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHH--HHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEE
T ss_pred             ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHH--HHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEE
Confidence            3556789999999999999999999999999988554  4455667889999999999999998 779999999999999


Q ss_pred             ccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .++   +++..+++.++++++|++.++|++++.++........++++||.+++||+++++++.+++++.|+++++++.|
T Consensus       216 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~Y  294 (512)
T 3fce_A          216 IDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTY  294 (512)
T ss_dssp             CCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCc
Confidence            976   6899999999999999999999999999988877778899999999999999999999999999879999987

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=4.6e-46  Score=342.22  Aligned_cols=297  Identities=18%  Similarity=0.197  Sum_probs=232.8

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC-----CC--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD-----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~   99 (342)
                      .|+.++|.+.++++||++|+++.+     ++  +++||+||.++++++|+.|++.|+ +||+|+|+++|+++++++++||
T Consensus        24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~  102 (480)
T 3t5a_A           24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA  102 (480)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence            799999999999999999999763     12  799999999999999999999996 9999999999999999999999


Q ss_pred             HHhCCeEeccCC---CCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHh
Q 019348          100 IAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (342)
Q Consensus       100 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (342)
                      +++|++++|+++   ..+.+++.++++.++++++|++.+....+...........             ...+..++....
T Consensus       103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~  169 (480)
T 3t5a_A          103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES-------------PPSIIEVDLLDL  169 (480)
T ss_dssp             HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------------------CCEEEEGGGSCT
T ss_pred             HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccccc-------------ccceeEeccccc
Confidence            999999999999   7789999999999999999999887766554321100000             000000000000


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCC------CeEEEEccchhHHHHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL------DHVVLCVLPMFHVFGL  250 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~------~d~~~~~~p~~~~~g~  250 (342)
                      ...  .........++++++|+|||||||.||||++||+++.+.+...  ...+....      +|++++.+|++|.+|+
T Consensus       170 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  245 (480)
T 3t5a_A          170 DAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQL--MSGYFADTDGIPPPNSALVSWLPFYHDMGL  245 (480)
T ss_dssp             TCC-----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHH--HHHHCTTTTTCCCTTEEEEECCCTTSTTHH
T ss_pred             ccc--cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHH--HHHhccccccCCCCCCeEEEeCCCcCccHH
Confidence            000  1122334567899999999999999999999999998885553  33333444      8999999999999998


Q ss_pred             HHHHHHHhhcCCeEEEccCC----CHHHHHHHHHhccceEEEecHHHHHHHHcC----CCCCccCCCCceEEEeecccCC
Q 019348          251 SVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN----SLVRKFDISSLKLVGSGAAPLG  322 (342)
Q Consensus       251 ~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~----~~~~~~~l~~lr~~~~gG~~l~  322 (342)
                      ...++.++..|+++++.++.    ++..+++.++++++| +..+|+++..++..    ......++++||.+++||++++
T Consensus       246 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~  324 (480)
T 3t5a_A          246 VIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQ  324 (480)
T ss_dssp             HHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCC
T ss_pred             HHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCC
Confidence            67889999999999998753    899999999999999 78888888777763    3344567999999999999999


Q ss_pred             HHHHHHHHHhCC-----CCcccccC
Q 019348          323 KELMEDCQKNIP-----GATIFQKI  342 (342)
Q Consensus       323 ~~~~~~~~~~~~-----~~~l~~~Y  342 (342)
                      +++.++|+++|+     ++.+++.|
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~Y  349 (480)
T 3t5a_A          325 AATIKRFADRFARFNLQERVIRPSY  349 (480)
T ss_dssp             HHHHHHHHHHSGGGTCCGGGEEEEE
T ss_pred             HHHHHHHHHHHhhcCCChhhccccc
Confidence            999999999984     35688877

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4e-45  Score=338.14  Aligned_cols=289  Identities=18%  Similarity=0.251  Sum_probs=248.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      +|+.++|.+.++++||++|+++.  ++++||+||.++++++|+.|++. |.++|++|+++++|+++++++++||+++|++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~   78 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP   78 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence            58999999999999999999997  88999999999999999999875 8889999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      ++|+++.++.+++.++++.++++++|++.........                     .......+.++...... ....
T Consensus        79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-~~~~  136 (511)
T 3e7w_A           79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG---------------------QQIQTVSAEELLENEGG-SVSQ  136 (511)
T ss_dssp             EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC---------------------CSSCEEEHHHHHTSCSC-CCCG
T ss_pred             EEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc---------------------cccceecHhhhhccccC-Cccc
Confidence            9999999999999999999999999997543211110                     01112233444433221 1122


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|||||||.||||++||+++.+.+..  ....+....+|++++..|++|.+++ ..++.++..|++++
T Consensus       137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~  213 (511)
T 3e7w_A          137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDW--ICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLH  213 (511)
T ss_dssp             GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHH--HHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEE
T ss_pred             cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHH--HHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEE
Confidence            23456789999999999999999999999999988554  4445566789999999999999998 78999999999999


Q ss_pred             EccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+.   +++..+++.++++++|++.++|++++.++.........++++|.+++||+++++++.+++++.|+++++++.|
T Consensus       214 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~Y  293 (511)
T 3e7w_A          214 CVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTY  293 (511)
T ss_dssp             ECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECC
T ss_pred             EcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCc
Confidence            9876   6899999999999999999999999999998877777899999999999999999999999999879999998

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=8e-45  Score=340.21  Aligned_cols=302  Identities=23%  Similarity=0.299  Sum_probs=249.1

Q ss_pred             CCHH-HHHhhhcccCCCceEEEeCC---CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348           27 FSMV-HFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (342)
Q Consensus        27 ~~l~-~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~  102 (342)
                      +|+. ++|.+.++++||++|+++.+   .++++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus        55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~  134 (580)
T 3etc_A           55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL  134 (580)
T ss_dssp             CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence            6766 99999999999999998632   2479999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch--hhhhcc----C---CCeEEecCCCccccccccccccccccHHH
Q 019348          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKDL----N---LPAVLLGSKDKVSSSGLISRSSKIVSFHD  173 (342)
Q Consensus       103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (342)
                      |++++|++|.++.+++.+++++++++++|++.+..  ..+.+.    .   ...+.++..          ...++..+.+
T Consensus       135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  204 (580)
T 3etc_A          135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD----------VLEGWIDFRK  204 (580)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS----------CCTTCEEHHH
T ss_pred             CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc----------cccccccHHH
Confidence            99999999999999999999999999999987654  332221    1   223333221          2344566777


Q ss_pred             HHhccCCCCCCCC--CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHH
Q 019348          174 LIELSGSVTDIPD--VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS  251 (342)
Q Consensus       174 ~~~~~~~~~~~~~--~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~  251 (342)
                      .+...........  ....++++++|+|||||||.||+|.++|.+++..+..  .........++++++..|++|..+..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (580)
T 3etc_A          205 ELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILT--AKYWQNVEDDGLHYTVADSGWGKCVW  282 (580)
T ss_dssp             HHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHH--HHTTSCCCTTCEEEECCCTTSTHHHH
T ss_pred             HHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHH--HHHhhCCCCCceEEEeCChHHHHHHH
Confidence            6655431111111  2457889999999999999999999999988876433  34445567889999999999988885


Q ss_pred             HHHHHHhhcCCeEEEc--cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHH
Q 019348          252 VILYDQLQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC  329 (342)
Q Consensus       252 ~~~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~  329 (342)
                      ..++.++..|+++++.  ..+++..+++.++++++|+++++|++++.|.+.. ....++++||.+++||+++++++.++|
T Consensus       283 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~~  361 (580)
T 3etc_A          283 GKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNRF  361 (580)
T ss_dssp             HTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHHH
T ss_pred             HHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccCCCCHHHHHHH
Confidence            6688999999999987  5789999999999999999999999999999863 455678999999999999999999999


Q ss_pred             HHhCCCCcccccC
Q 019348          330 QKNIPGATIFQKI  342 (342)
Q Consensus       330 ~~~~~~~~l~~~Y  342 (342)
                      ++.++ +++++.|
T Consensus       362 ~~~~g-~~i~~~Y  373 (580)
T 3etc_A          362 LEFTG-IKLMEGF  373 (580)
T ss_dssp             HHHHS-CCCEEEE
T ss_pred             HHHhC-CeEeccc
Confidence            99987 8999987

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=5.8e-45  Score=344.04  Aligned_cols=301  Identities=22%  Similarity=0.267  Sum_probs=249.8

Q ss_pred             CCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHH
Q 019348           19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (342)
Q Consensus        19 ~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA   98 (342)
                      ...+++  .++.++|.++++  ||++|+++.  ++++||+||.++++++|+.|++.|+++||+|+++++|+.+++++++|
T Consensus        21 ~~~~~~--~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA   94 (617)
T 3rg2_A           21 KGYWQD--LPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA   94 (617)
T ss_dssp             TTSCCC--CCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             cCCCCc--CCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            345555  799999999988  999999998  88999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh--------hh-hcc-CCCeEEecCCCcccccccccccccc
Q 019348           99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD--------KV-KDL-NLPAVLLGSKDKVSSSGLISRSSKI  168 (342)
Q Consensus        99 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
                      |+++|++++|++|..+.+++.++++.+++++++++.....        .. ... ....+.....            ...
T Consensus        95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  162 (617)
T 3rg2_A           95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND------------SGE  162 (617)
T ss_dssp             HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC------------CST
T ss_pred             HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc------------ccc
Confidence            9999999999999999999999999999999999876531        11 111 1222222111            011


Q ss_pred             ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF  248 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  248 (342)
                      ..+.+......  .........++++++|+|||||||.||||+++|+++.+.+..  ....+.+..+|++++..|++|.+
T Consensus       163 ~~~~~~~~~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~  238 (617)
T 3rg2_A          163 HNLQDAINHPA--EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR--SVEICQFTQQTRYLCAIPAAHNY  238 (617)
T ss_dssp             TBHHHHHHSCC--SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHH--HHHHHTCCTTCEEEECSCTTSHH
T ss_pred             cchhhhhcccc--cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHH--HHHhcCCCCcceEEEeccchhhh
Confidence            22334433322  222334456789999999999999999999999999988655  44455668899999999999999


Q ss_pred             HHHH-HHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCC--ccCCCCceEEEeecccCCHHH
Q 019348          249 GLSV-ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKEL  325 (342)
Q Consensus       249 g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~~~l~~lr~~~~gG~~l~~~~  325 (342)
                      ++.. .++.++..|+++++.++.++..+++.++++++|++.++|+++..+++.....  ..++++||.+++||+++++++
T Consensus       239 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~  318 (617)
T 3rg2_A          239 AMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATL  318 (617)
T ss_dssp             HHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHH
T ss_pred             hhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHH
Confidence            9844 5899999999999999899999999999999999999999999988754332  236899999999999999999


Q ss_pred             HHHHHHhCCCCcccccC
Q 019348          326 MEDCQKNIPGATIFQKI  342 (342)
Q Consensus       326 ~~~~~~~~~~~~l~~~Y  342 (342)
                      .++|.+.++ +++++.|
T Consensus       319 ~~~~~~~~~-~~~~~~Y  334 (617)
T 3rg2_A          319 AARIPAEIG-CQLQQVF  334 (617)
T ss_dssp             HHHHHHHTC-SEEEEEE
T ss_pred             HHHHHHHhC-CcEEEEe
Confidence            999999997 8999987

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=2.6e-45  Score=345.41  Aligned_cols=281  Identities=15%  Similarity=0.137  Sum_probs=239.3

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .|+.++|.+.++++||++|+++.  ++++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus        27 ~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~  104 (620)
T 4dg8_A           27 PTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY  104 (620)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            79999999999999999999998  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|++|.++.+++.++++++++++++++.........  ........                     . ....  .....
T Consensus       105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~~---------------------~-~~~~--~~~~~  158 (620)
T 4dg8_A          105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--LPCVPVRH---------------------L-PAAP--ASVAR  158 (620)
T ss_dssp             EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--SCEEEGGG---------------------C-CCCC--CCSSC
T ss_pred             EeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--Cceeeecc---------------------C-CcCC--ccccC
Confidence            999999999999999999999999976543221111  11111000                     0 0000  11122


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....++++++|+|||||||.||||+++|+++.+.+..   ...+...++|++++..|++|..++ ..++.+|..|+++++
T Consensus       159 ~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~---~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~  234 (620)
T 4dg8_A          159 PCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG---QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVL  234 (620)
T ss_dssp             CCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS---CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEE
T ss_pred             CCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH---HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEe
Confidence            3346789999999999999999999999999876432   334556789999999999999998 779999999999999


Q ss_pred             cc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+  .+++..+++.++++++|+++++|++++.|++..   ..++++||.+++||++++++..+++.+.++++++++.|
T Consensus       235 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y  309 (620)
T 4dg8_A          235 NDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGY  309 (620)
T ss_dssp             CCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             CccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeE
Confidence            64  579999999999999999999999999998743   34688999999999999999999999998889999988

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.5e-44  Score=335.67  Aligned_cols=299  Identities=22%  Similarity=0.323  Sum_probs=240.0

Q ss_pred             CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  107 (342)
                      ++.+++.+.++ +||++|+++.  ++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus        25 ~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  101 (529)
T 2v7b_A           25 FAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV  101 (529)
T ss_dssp             HHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence            48899999999 9999999987  68999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----CC-CeEEe-cCCCccccccccccccccccHHHHHhccCC
Q 019348          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----NL-PAVLL-GSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      |+++.++.+++.+++++++++++|++++....+...     .. ..+.. +...        ........++++..... 
T Consensus       102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-  172 (529)
T 2v7b_A          102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE--------SEPRLAPLFEELIDAAA-  172 (529)
T ss_dssp             ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCBHHHHHHTSC-
T ss_pred             ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc--------cccccccchhhhhccCC-
Confidence            999999999999999999999999998776544332     11 22222 2110        00011224566554322 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHH-HHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                       .........++++++|+|||||||.||||++||+++ ......  ....+.+.++|++++..|++|.+++...++.++.
T Consensus       173 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  249 (529)
T 2v7b_A          173 -PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELY--AKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLS  249 (529)
T ss_dssp             -CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHT--CCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHH
T ss_pred             -CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHH--hhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHh
Confidence             222233456789999999999999999999999999 554222  3334556789999999999999998666788999


Q ss_pred             cCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcc
Q 019348          260 KGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (342)
Q Consensus       260 ~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l  338 (342)
                      .|+++++. +.+++..+++.++++++|+++++|+++..+++..........++|.+++||+++++++.++|++.|+ +++
T Consensus       250 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~i  328 (529)
T 2v7b_A          250 VGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG-CEI  328 (529)
T ss_dssp             HTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS-CCE
T ss_pred             cCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC-Cce
Confidence            99999988 6789999999999999999999999999999876544332348999999999999999999999996 899


Q ss_pred             cccC
Q 019348          339 FQKI  342 (342)
Q Consensus       339 ~~~Y  342 (342)
                      ++.|
T Consensus       329 ~~~Y  332 (529)
T 2v7b_A          329 LDGI  332 (529)
T ss_dssp             EEEE
T ss_pred             eeeE
Confidence            9887

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=6.9e-45  Score=340.60  Aligned_cols=283  Identities=16%  Similarity=0.213  Sum_probs=240.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++++||++|+++.  ++++||+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|+++
T Consensus        75 ~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  152 (570)
T 4gr5_A           75 ACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY  152 (570)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            69999999999999999999997  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|++|.++.+++.++++.+++++++++.+....+...  ..+.+...                    ......  .....
T Consensus       153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~--------------------~~~~~~--~~~~~  208 (570)
T 4gr5_A          153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT--TTLYVEDE--------------------AASDAP--AGNLA  208 (570)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS--EEEECCC-----------------------------CCCCC
T ss_pred             EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC--cceeeecc--------------------cccccc--ccccC
Confidence            9999999999999999999999999987654433221  11111110                    000000  11222


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....++++++|+|||||||.||||+++|+++.+....   .....+.++|++++..|++|..+. ..++.++..|+++++
T Consensus       209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~  284 (570)
T 4gr5_A          209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG---QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVL  284 (570)
T ss_dssp             CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS---CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEE
T ss_pred             CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh---hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEE
Confidence            3456789999999999999999999999999876432   334456789999999999987666 678999999999999


Q ss_pred             cc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+  .+++..+++.++++++|++.++|++++.|++..   ..++++||.+++||+++++++.+++++.+++++++++|
T Consensus       285 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  359 (570)
T 4gr5_A          285 QSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV---PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY  359 (570)
T ss_dssp             CSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc---hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence            86  478999999999999999999999999998764   34688999999999999999999999999889999987

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=8.8e-45  Score=344.37  Aligned_cols=308  Identities=23%  Similarity=0.302  Sum_probs=248.4

Q ss_pred             CHHHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348           28 SMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G  103 (342)
                      ++.++|.++++++||++|+++.+    .++++||+||.+++.++|+.|++.|+++||+|+|+++|++++++++|||+++|
T Consensus        77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G  156 (652)
T 1pg4_A           77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG  156 (652)
T ss_dssp             HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            46788889999999999999732    24789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hh----hcc---CCC-eEEecCCCcccccccccccc
Q 019348          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KV----KDL---NLP-AVLLGSKDKVSSSGLISRSS  166 (342)
Q Consensus       104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~---~~~-~~~~~~~~~~~~~~~~~~~~  166 (342)
                      ++++|+++.++.+++.+++++++++++|+++....         .+    ...   ... .+.++.......    ....
T Consensus       157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~----~~~~  232 (652)
T 1pg4_A          157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID----WQEG  232 (652)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC----CCBT
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc----ccCC
Confidence            99999999999999999999999999999876432         11    111   112 333322110000    0011


Q ss_pred             ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~  246 (342)
                      ....|.+++....  .........++++++|+|||||||.||||+++|++++..+.. .....+.+.++|++++..|++|
T Consensus       233 ~~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~-~~~~~~~~~~~d~~l~~~~~~~  309 (652)
T 1pg4_A          233 RDLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT-TFKYVFDYHPGDIYWCTADVGW  309 (652)
T ss_dssp             TEEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHH-HHHHHTTCCTTCEEEECSCTTS
T ss_pred             CceeHHHHHhhcC--CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHH-HHHHhcCCCCCCEEEEccCCee
Confidence            2245677765433  222334456789999999999999999999999998765321 1233455678999999999999


Q ss_pred             HHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeeccc
Q 019348          247 VFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAP  320 (342)
Q Consensus       247 ~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~  320 (342)
                      +.|+...++.+|..|+++++.+.    +++..+++.++++++|+++++|++++.|.+...  ....++++||.+++||++
T Consensus       310 ~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~  389 (652)
T 1pg4_A          310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP  389 (652)
T ss_dssp             HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred             eechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence            99986678999999999999864    589999999999999999999999999998764  345678999999999999


Q ss_pred             CCHHHHHHHHHhCC--CCcccccC
Q 019348          321 LGKELMEDCQKNIP--GATIFQKI  342 (342)
Q Consensus       321 l~~~~~~~~~~~~~--~~~l~~~Y  342 (342)
                      +++++.+++++.+|  ++++++.|
T Consensus       390 l~~~~~~~~~~~~g~~~~~i~~~Y  413 (652)
T 1pg4_A          390 INPEAWEWYWKKIGKEKCPVVDTW  413 (652)
T ss_dssp             CCHHHHHHHHHHTTTTCSCEEEEB
T ss_pred             CCHHHHHHHHHHhCCCCCcEEccc
Confidence            99999999999986  37888877

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.1e-44  Score=336.02  Aligned_cols=291  Identities=15%  Similarity=0.174  Sum_probs=245.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .|+.+.|.+.++++||++|+.+.  ++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus         4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY   81 (521)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999987  8899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (342)
                      +|++|.++.+++.++++.++++++|++++....+...  ..+.                  ...+........  .....
T Consensus        82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~--~~~~------------------~~~~~~~~~~~~--~~~~~  139 (521)
T 3l8c_A           82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--SLVS------------------LSEIESAKLAEM--PYERT  139 (521)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS--EEEE------------------HHHHHHHHHHTC--CCCCS
T ss_pred             EecCccccHHHHHHHHHhCCCCEEEecCccccccccC--cccc------------------hhhhhhcccccC--CcccC
Confidence            9999999999999999999999999987654322111  0000                  001111111111  22223


Q ss_pred             CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ....++++++|+|||||||.||||++||+++.+.+........+....++++++..|++|..++ ..++.++..|+++++
T Consensus       140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~  218 (521)
T 3l8c_A          140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFA  218 (521)
T ss_dssp             SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEE
T ss_pred             CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEE
Confidence            4557789999999999999999999999999987554333333556788999999999999888 788999999999999


Q ss_pred             ccCC---CHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          267 MGKF---DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       267 ~~~~---~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      .+..   ++..+++.+.++++|++.++|+++..+.........++++||.+++||+++++++.+++.+.|+++++++.|
T Consensus       219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y  297 (521)
T 3l8c_A          219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY  297 (521)
T ss_dssp             CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence            8764   899999999999999999999999999988877777899999999999999999999999999879999988

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.4e-44  Score=334.37  Aligned_cols=293  Identities=22%  Similarity=0.299  Sum_probs=240.2

Q ss_pred             CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      +.|+.++|.+.++++||++|+++.  ++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++
T Consensus         5 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~   82 (509)
T 3ivr_A            5 DFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI   82 (509)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred             cCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            379999999999999999999997  889999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----CCCeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      ++|++|.++.+++.++++.++++++|++.+....+...     ....+......             ...+.++......
T Consensus        83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~  149 (509)
T 3ivr_A           83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDG-------------SGPFAPFKDLASD  149 (509)
T ss_dssp             EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCC-------------CSSCEEGGGTCCC
T ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCC-------------CcChhhHhhccCC
Confidence            99999999999999999999999999998876552211     12222221110             0111222221110


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  260 (342)
                       .........++++++|+|||||||.||||+++|+++.+.+..  ....+.+.++|++++.+|++|.+++ ...+.++..
T Consensus       150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~~~~  225 (509)
T 3ivr_A          150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSS--LVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQA  225 (509)
T ss_dssp             -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHH--HHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHH
T ss_pred             -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHH--HHHhhCCCCCcEEEEeCCCcchhHH-HHHHHHHHh
Confidence             222334567889999999999999999999999999988555  4455667889999999999999999 555555555


Q ss_pred             CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (342)
Q Consensus       261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~  340 (342)
                      |++.++...+++..+++.++++++|++.++|+++..|++..  ...+++++|.++.||++   +..+++++.++++++++
T Consensus       226 ~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~  300 (509)
T 3ivr_A          226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWA  300 (509)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEE
T ss_pred             CCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEc
Confidence            55555556889999999999999999999999999999876  45678899999999987   89999999997799999


Q ss_pred             cC
Q 019348          341 KI  342 (342)
Q Consensus       341 ~Y  342 (342)
                      .|
T Consensus       301 ~Y  302 (509)
T 3ivr_A          301 TF  302 (509)
T ss_dssp             EE
T ss_pred             cc
Confidence            87

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.1e-44  Score=341.98  Aligned_cols=309  Identities=21%  Similarity=0.303  Sum_probs=248.6

Q ss_pred             CHHHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348           28 SMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (342)
Q Consensus        28 ~l~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~  102 (342)
                      ++.++|.++++++||++|+++.+    .++++||+||.+++.++|+.|+ +.|+++||+|+|+++|++++++++|||+++
T Consensus        83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~  162 (663)
T 1ry2_A           83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI  162 (663)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            57788889999999999999732    3578999999999999999999 999999999999999999999999999999


Q ss_pred             CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hhhcc-----CCC-eEEecCCCccccccccccccc
Q 019348          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDL-----NLP-AVLLGSKDKVSSSGLISRSSK  167 (342)
Q Consensus       103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~  167 (342)
                      |++++|+++.++.+++.+++++++++++|+++....         .+.+.     ... .+.++...... ..  .....
T Consensus       163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~--~~~~~  239 (663)
T 1ry2_A          163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS-VA--FHAPR  239 (663)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS-CC--CCSSS
T ss_pred             CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc-cc--cCCCc
Confidence            999999999999999999999999999999876432         11111     112 23332211000 00  00112


Q ss_pred             cccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHH
Q 019348          168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV  247 (342)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~  247 (342)
                      ...|.+++....  .........++++++|+|||||||.||||+++|++++..+.. .....+...++|++++..|++|+
T Consensus       240 ~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~  316 (663)
T 1ry2_A          240 DLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL-TMRYTFDTHQEDVFFTAGDIGWI  316 (663)
T ss_dssp             EEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHH-HHHHHSCCCSSCEEEECSCTTSH
T ss_pred             cccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHH-HHHHhcCCCCCcEEEEcCCcHHh
Confidence            345666665432  222334556789999999999999999999999998765321 12334566789999999999999


Q ss_pred             HHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccC
Q 019348          248 FGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPL  321 (342)
Q Consensus       248 ~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l  321 (342)
                      .+....++.+|..|+++++.+.    +++..+++.|+++++|+++++|++++.|.+...  ....++++||.+++||+++
T Consensus       317 ~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l  396 (663)
T 1ry2_A          317 TGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPI  396 (663)
T ss_dssp             HHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCC
T ss_pred             hhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCC
Confidence            9986678999999999999864    589999999999999999999999999988764  3456799999999999999


Q ss_pred             CHHHHHHHHHhCC--CCcccccC
Q 019348          322 GKELMEDCQKNIP--GATIFQKI  342 (342)
Q Consensus       322 ~~~~~~~~~~~~~--~~~l~~~Y  342 (342)
                      ++++.+++++.+|  ++++++.|
T Consensus       397 ~~~~~~~~~~~~g~~~~~i~~~Y  419 (663)
T 1ry2_A          397 AAEVWEWYSEKIGKNEIPIVDTY  419 (663)
T ss_dssp             CHHHHHHHHHTTSCSSSCEEECB
T ss_pred             CHHHHHHHHHHhCCCCceEEEeE
Confidence            9999999999986  47888887

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=6.2e-44  Score=333.70  Aligned_cols=299  Identities=16%  Similarity=0.199  Sum_probs=246.4

Q ss_pred             CHHHHHhhhccc-----CCCceEEEeCC---CCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHH
Q 019348           28 SMVHFLFRNSAS-----YSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLG   98 (342)
Q Consensus        28 ~l~~~l~~~~~~-----~p~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA   98 (342)
                      ++.++|.+.+++     +||++|+++.+   .++++||+||.++++++|+.|++. |+++||+|+|+++|+++++++++|
T Consensus        39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA  118 (570)
T 3c5e_A           39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG  118 (570)
T ss_dssp             HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            457889888888     99999999742   247899999999999999999998 999999999999999999999999


Q ss_pred             HHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----C-CC-eEEecCCCccccccccccccccccHH
Q 019348           99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N-LP-AVLLGSKDKVSSSGLISRSSKIVSFH  172 (342)
Q Consensus        99 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (342)
                      |+++|++++|++|.++.+++.++++.++++++|++++....+...    . .. .+.++..          ...++..+.
T Consensus       119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  188 (570)
T 3c5e_A          119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK----------SCDGWLNFK  188 (570)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS----------CCTTSEEHH
T ss_pred             HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc----------CccccccHH
Confidence            999999999999999999999999999999999998876655332    1 11 2222211          112334566


Q ss_pred             HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  252 (342)
                      +++....  .........++++++|+|||||||.||||+++|+ ++........ ..+.+..+|++++..|++|.+++..
T Consensus       189 ~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~  264 (570)
T 3c5e_A          189 KLLNEAS--TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILC  264 (570)
T ss_dssp             HHHHHSC--SCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHH
T ss_pred             HHhhccc--ccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHH
Confidence            6655433  2222334567899999999999999999999999 4441111112 4455678999999999999999855


Q ss_pred             HHHHHhhcCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHH
Q 019348          253 ILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ  330 (342)
Q Consensus       253 ~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~  330 (342)
                      .++.++..|+++++.+  .+++..+++.++++++|+++++|++++.|.+.. ....++++||.+++||+++++++.++|+
T Consensus       265 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~  343 (570)
T 3c5e_A          265 SLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWR  343 (570)
T ss_dssp             TTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred             HHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHH
Confidence            7899999999999986  689999999999999999999999999999873 3445789999999999999999999999


Q ss_pred             HhCCCCcccccC
Q 019348          331 KNIPGATIFQKI  342 (342)
Q Consensus       331 ~~~~~~~l~~~Y  342 (342)
                      +.++ +++++.|
T Consensus       344 ~~~g-~~i~~~Y  354 (570)
T 3c5e_A          344 AQTG-LDIRESY  354 (570)
T ss_dssp             HHHS-CCCEEEE
T ss_pred             HHhC-Cchhhcc
Confidence            9886 8999987

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.7e-44  Score=332.99  Aligned_cols=292  Identities=24%  Similarity=0.330  Sum_probs=242.3

Q ss_pred             HHHhhhcccCCCceEEEeC-CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEecc
Q 019348           31 HFLFRNSASYSSKLALIDA-DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA  109 (342)
Q Consensus        31 ~~l~~~~~~~p~~~a~~~~-~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l  109 (342)
                      ++|.+.++++|+++++... +.++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl   83 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL   83 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence            4677888899999888732 237899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      +|.++.+++.+++++++++++|++++....+...    ......+...             ....+........  ....
T Consensus        84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~~~~  148 (503)
T 4fuq_A           84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD-------------GRGSLTDAAAGAS--EAFA  148 (503)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTT-------------SCSHHHHHHHTSC--SCCC
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCC-------------cccccchhhhcCC--CCcC
Confidence            9999999999999999999999997765443322    2222222211             0011222222211  2223


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|||||||.||||+++|+++.+.+..  ....+.+.++|++++.+|++|.+|+...++.++..|++++
T Consensus       149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~  226 (503)
T 4fuq_A          149 TIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLT--LVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMI  226 (503)
T ss_dssp             CCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHH--HHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEE
T ss_pred             cCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHH--HHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEE
Confidence            34566789999999999999999999999999988555  4455667889999999999999997566888999999999


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+++++..+++.++  ++|+++++|+++..+++.......+++++|.+++||+++++++.++|++.++ +++++.|
T Consensus       227 ~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~Y  300 (503)
T 4fuq_A          227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLERY  300 (503)
T ss_dssp             ECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEECC
T ss_pred             EcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccceE
Confidence            999999999999998  8999999999999999988777778999999999999999999999999997 8999988

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.3e-44  Score=331.40  Aligned_cols=300  Identities=20%  Similarity=0.267  Sum_probs=234.4

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      +||.++|.++++++||++|+++.  ++++||+||.+++.++|+.|++.   +||+|+++++|+++++++++||+++|+++
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~   75 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI   75 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            47788999999999999999987  78999999999999999999886   89999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCcccccccccccccc-ccHHHHHhccCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKI-VSFHDLIELSGSV  181 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  181 (342)
                      +|+++.++.+++.++++.++++++|++.+.........    ...+......... ... ...... ...+....... .
T Consensus        76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-~  152 (501)
T 3ipl_A           76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGL-LDN-TMGIQYDTSNETVVPKES-P  152 (501)
T ss_dssp             EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC----------------------------------CC-H
T ss_pred             EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccc-ccc-ccccccccchhhccccCC-c
Confidence            99999999999999999999999999877654332110    0000000000000 000 000000 00000110000 0


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (342)
Q Consensus       182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G  261 (342)
                      .........++++++|+|||||||.||||++||+++.+.+..  ....+...++|++++..|++|.+|+ ..++.++..|
T Consensus       153 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G  229 (501)
T 3ipl_A          153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIG--CKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEG  229 (501)
T ss_dssp             HHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHH--HHHHTCCCTTCEEEECSCTTSHHHH-HHHHHHHHHT
T ss_pred             ccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHH--HHHhhCCCccCEEEEeCcHHHHHHH-HHHHHHHHcC
Confidence            001123456789999999999999999999999999988555  4455566889999999999999999 6689999999


Q ss_pred             CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK  341 (342)
Q Consensus       262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  341 (342)
                      +++++.+++++..+++.++++++|++.++|++++.|.+......   .+||.+++||+++++++.+++++.  ++++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~  304 (501)
T 3ipl_A          230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNS  304 (501)
T ss_dssp             CEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred             ceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence            99999999999999999999999999999999999998764433   289999999999999999999984  5899998


Q ss_pred             C
Q 019348          342 I  342 (342)
Q Consensus       342 Y  342 (342)
                      |
T Consensus       305 Y  305 (501)
T 3ipl_A          305 F  305 (501)
T ss_dssp             E
T ss_pred             c
Confidence            7

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.5e-43  Score=330.67  Aligned_cols=286  Identities=18%  Similarity=0.253  Sum_probs=234.0

Q ss_pred             CCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHH
Q 019348           19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (342)
Q Consensus        19 ~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA   98 (342)
                      .+.+..  .++.++|.+.++++||++|+++.  ++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++|
T Consensus        33 ~~~~~~--~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  108 (563)
T 1amu_A           33 AEYPRD--KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA  108 (563)
T ss_dssp             CCCCTT--CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCCCC--CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            334444  69999999999999999999987  78999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCC--eEEecCCCccccccccccccccccHHHHHh
Q 019348           99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP--AVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (342)
Q Consensus        99 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (342)
                      |+++|++++|++|.++.+++.+++++++++++|++++...........  ...+...                .   +. 
T Consensus       109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~----------------~---~~-  168 (563)
T 1amu_A          109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEED----------------T---IK-  168 (563)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCS----------------T---TT-
T ss_pred             HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecch----------------h---hc-
Confidence            999999999999999999999999999999999998776655443211  1111110                0   00 


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~  256 (342)
                      ...  .........++++++|+|||||||.||||++||+++.+.+..  ....+...++|++++..|++|..++ ..++.
T Consensus       169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~  243 (563)
T 1amu_A          169 IRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVF--FENSLNVTEKDRIGQFASISFDASV-WEMFM  243 (563)
T ss_dssp             TSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHH--HHHTSCCCTTCEEEECSCTTSTHHH-HHHHH
T ss_pred             ccc--CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHH--HHHhcCCCCCCEEEEeCCccHHHHH-HHHHH
Confidence            000  111122345789999999999999999999999999887544  4445566789999999999999988 67889


Q ss_pred             HhhcCCeEEEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348          257 QLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (342)
Q Consensus       257 ~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  333 (342)
                      ++..|+++++.+.   +++..+++.++++++|++.++|+++..+...      .+++||.+++||+++++++.++|++. 
T Consensus       244 ~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~-  316 (563)
T 1amu_A          244 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK-  316 (563)
T ss_dssp             HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT-
T ss_pred             HHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC-
Confidence            9999999999875   6899999999999999999999998877432      46789999999999999999999874 


Q ss_pred             CCCcccccC
Q 019348          334 PGATIFQKI  342 (342)
Q Consensus       334 ~~~~l~~~Y  342 (342)
                        +++++.|
T Consensus       317 --~~~~~~Y  323 (563)
T 1amu_A          317 --VTYINAY  323 (563)
T ss_dssp             --SEEEEEE
T ss_pred             --CeEEEEE
Confidence              6777776

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.5e-44  Score=338.69  Aligned_cols=299  Identities=20%  Similarity=0.244  Sum_probs=243.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCC--CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~  104 (342)
                      .|+.++|.+.++++||++|+++.+  .++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+
T Consensus        11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   90 (590)
T 3kxw_A           11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGC   90 (590)
T ss_dssp             SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCc
Confidence            799999999999999999998643  358999999999999999999999999999999999999999999999999999


Q ss_pred             eEeccCCCCC---HHHHHHHhhhcCceEEEEcccchhhhhccCCCeE-EecCCCccccccccccccccccHHHHHhccCC
Q 019348          105 IASTANPVYT---VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV-LLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (342)
Q Consensus       105 ~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (342)
                      +++|++|..+   .+++.++++.+++++++++.+....+........ ...             ...+...+.+..... 
T Consensus        91 ~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-  156 (590)
T 3kxw_A           91 IAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFL-------------KIPAIALESIELNRS-  156 (590)
T ss_dssp             EEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEET-------------TEEEEEGGGCCGGGG-
T ss_pred             EEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccc-------------ccceeechhcccccc-
Confidence            9999999884   5789999999999999999876665543220000 000             000000111110001 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (342)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~  260 (342)
                       .........++++++|+|||||||.||||++||+++.+.+..  ....+.+.++|++++.+|++|.+|+...++.++..
T Consensus       157 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~  233 (590)
T 3kxw_A          157 -SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNK--IFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYG  233 (590)
T ss_dssp             -GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHH--HHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHH
T ss_pred             -ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHH--HHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhc
Confidence             112233556789999999999999999999999999998655  44456678899999999999999995558999999


Q ss_pred             CCeEEEccCC----CHHHHHHHHHhccceEEEecHHHHHHHHcCC---CCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348          261 GNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKNS---LVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (342)
Q Consensus       261 G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  333 (342)
                      |+++++.+++    ++..+++.++++++|++.++|.++..+++..   .....++++||.+++||+++++++.++|++.|
T Consensus       234 G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~  313 (590)
T 3kxw_A          234 GIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAF  313 (590)
T ss_dssp             TCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHH
T ss_pred             CceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHH
Confidence            9999999865    7999999999999999999999999988753   33456789999999999999999999999988


Q ss_pred             C-----CCcccccC
Q 019348          334 P-----GATIFQKI  342 (342)
Q Consensus       334 ~-----~~~l~~~Y  342 (342)
                      +     +.++++.|
T Consensus       314 ~~~g~~~~~~~~~Y  327 (590)
T 3kxw_A          314 KEFGFRKEAFYPCY  327 (590)
T ss_dssp             GGGTCCGGGEEEEE
T ss_pred             HHcCCCcccccccc
Confidence            4     34688877

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=3.1e-42  Score=322.48  Aligned_cols=292  Identities=16%  Similarity=0.148  Sum_probs=234.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCC--------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHH
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADS--------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~--------~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA   98 (342)
                      +|+.++|.+.++++||++|+++.+.        ++++||+||.++++++|+.|.+.|+ +||+|+++++|+++++++++|
T Consensus        20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA   98 (562)
T 3ite_A           20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVG   98 (562)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHH
Confidence            8999999999999999999987531        2789999999999999999999999 799999999999999999999


Q ss_pred             HHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhcc
Q 019348           99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (342)
Q Consensus        99 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (342)
                      |+++|++++|++|.++.+++.+++++++++++|++++.......... ...+...              ...+.+.....
T Consensus        99 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~  163 (562)
T 3ite_A           99 IMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPE-TKVLDTK--------------NQSFIENLSTQ  163 (562)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTT-CEEEETT--------------CHHHHHHHHHS
T ss_pred             HHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCcc-ceeeccc--------------chhhhhhcccc
Confidence            99999999999999999999999999999999998765443321111 1111111              11223333222


Q ss_pred             CCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh------hccccCCCeEEEEccchhHHHHHHH
Q 019348          179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH------QELVGELDHVVLCVLPMFHVFGLSV  252 (342)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~------~~~~~~~~d~~~~~~p~~~~~g~~~  252 (342)
                      .  .........++++++|+|||||||.||||++||+++.+.+......      ........+++++..|++|..++ .
T Consensus       164 ~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (562)
T 3ite_A          164 D--TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-G  240 (562)
T ss_dssp             C--CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-H
T ss_pred             c--ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-H
Confidence            2  2222234456889999999999999999999999998875543221      12335678999999999998887 7


Q ss_pred             HHHHHhhcCCeEEEccCCC-HHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHH
Q 019348          253 ILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK  331 (342)
Q Consensus       253 ~~~~~l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~  331 (342)
                      .++.++..|+++++.+.+. +..+++.++++++|++.++|++++.+...    ..++++||.+++||+++++++.++|++
T Consensus       241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~  316 (562)
T 3ite_A          241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSS  316 (562)
T ss_dssp             HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTT
T ss_pred             HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhh
Confidence            7889999999999987653 57788999999999999999999887544    356889999999999999999999999


Q ss_pred             hCCCCcccccC
Q 019348          332 NIPGATIFQKI  342 (342)
Q Consensus       332 ~~~~~~l~~~Y  342 (342)
                      .++ +++++.|
T Consensus       317 ~~~-~~~~~~Y  326 (562)
T 3ite_A          317 SDR-VALVNVY  326 (562)
T ss_dssp             CSS-CEEEEEE
T ss_pred             CCC-cEEEEee
Confidence            876 8999887

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=8.8e-42  Score=345.95  Aligned_cols=285  Identities=17%  Similarity=0.225  Sum_probs=242.1

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .++.++|.+.++++||++|+++.  ++++||+||.++++++|+.|++.|+++|++|+|+++|+.+++++++||+++|+++
T Consensus       464 ~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~  541 (1304)
T 2vsq_A          464 KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY  541 (1304)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCC--eEEecCCCccccccccccccccccHHHHHhccCCCCCC
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP--AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI  184 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (342)
                      +|++|.++.+++.++++++++++++++.+.......+...  .+.++..                  ....  ..  ...
T Consensus       542 vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~--~~--~~~  599 (1304)
T 2vsq_A          542 LPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ------------------TRFE--EQ--ASD  599 (1304)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG------------------GGGG--SC--SSC
T ss_pred             EEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc------------------cccc--cc--cCC
Confidence            9999999999999999999999999998765544333211  1111110                  0000  01  111


Q ss_pred             CCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeE
Q 019348          185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV  264 (342)
Q Consensus       185 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~  264 (342)
                      ......++++++|+|||||||+||||+++|+++.+..   +....+.+..+|+++...|++|..+. ..++.+|..|+++
T Consensus       600 ~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~---~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l  675 (1304)
T 2vsq_A          600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV---KHVDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARL  675 (1304)
T ss_dssp             CCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH---SSCCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEE
T ss_pred             CCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH---HHHHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEE
Confidence            2234567899999999999999999999999998652   23445566789999999999998887 7899999999999


Q ss_pred             EEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348          265 VSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK  341 (342)
Q Consensus       265 v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~  341 (342)
                      ++.+.   +++..+++.++++++|+++++|++++.+.+..   ...+++||.+++|||++++++.++|.+.+++.+++|.
T Consensus       676 ~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~  752 (1304)
T 2vsq_A          676 IIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINC  752 (1304)
T ss_dssp             EECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEE
T ss_pred             EECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEe
Confidence            99864   68999999999999999999999999998653   2346789999999999999999999999887899998


Q ss_pred             C
Q 019348          342 I  342 (342)
Q Consensus       342 Y  342 (342)
                      |
T Consensus       753 Y  753 (1304)
T 2vsq_A          753 Y  753 (1304)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=2.6e-42  Score=318.48  Aligned_cols=279  Identities=21%  Similarity=0.285  Sum_probs=229.9

Q ss_pred             CCHHHHHhhhcccCCC-ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348           27 FSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  105 (342)
                      .++.+.|.+.++++|+ ++|+++.  ++++||+||.++++++|..|.     .|++|+++++|+++++++++||+++|++
T Consensus        22 ~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~   94 (505)
T 3nyq_A           22 SSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA   94 (505)
T ss_dssp             --CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred             chhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            5789999999999997 9999998  889999999999999999885     3789999999999999999999999999


Q ss_pred             EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (342)
Q Consensus       106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (342)
                      ++|++|.++.+++.+++++++++++|++.+............+.++..                        ..  ....
T Consensus        95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------------------------~~--~~~~  148 (505)
T 3nyq_A           95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVR------------------------AR--GAVP  148 (505)
T ss_dssp             EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTT------------------------CC--CCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccc------------------------cc--cCCC
Confidence            999999999999999999999999999865211100001111111100                        00  1112


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      .....++++++|+|||||||.||||+++|+++.+.+..  ....+...++|++++.+|++|..|+...++.++..|++++
T Consensus       149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~  226 (505)
T 3nyq_A          149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDA--LADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR  226 (505)
T ss_dssp             CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHH--HHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred             CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHH--HHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence            23456789999999999999999999999999988655  4445566889999999999999998667999999999999


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC---CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV---RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+++++..+++.+ ++++|+++++|+++..+++....   ....++++|.+++||+++++++.+++++.++ +++++.|
T Consensus       227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~~Y  304 (505)
T 3nyq_A          227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG-RRVIERY  304 (505)
T ss_dssp             ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEEEE
T ss_pred             ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC-Ceeeccc
Confidence            99999999999999 88999999999999999874322   1245788999999999999999999999987 8999987

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.91  E-value=3.8e-25  Score=194.71  Aligned_cols=144  Identities=19%  Similarity=0.205  Sum_probs=125.6

Q ss_pred             CCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCC
Q 019348          191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF  270 (342)
Q Consensus       191 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~  270 (342)
                      .+++++|+|||||||.||||++||+++.+.+..  ....+.+.++|++++.+|++|++|+ ..++.++..|+++++.++.
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~  112 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAM--TGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT  112 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHH--HHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHH--HHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc
Confidence            478999999999999999999999999988655  4555667889999999999999999 7788899999999988642


Q ss_pred             CHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       271 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                        ...++.++++++|++.++|++++.|++... ...++++||.+++||+++++++.+++++.  ++++++.|
T Consensus       113 --~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~Y  179 (358)
T 4gs5_A          113 --ANPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSY  179 (358)
T ss_dssp             --SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEE
T ss_pred             --ccHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEecc
Confidence              234677899999999999999999998764 34578999999999999999999999885  58999987

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.88  E-value=4.7e-23  Score=182.58  Aligned_cols=152  Identities=18%  Similarity=0.151  Sum_probs=127.4

Q ss_pred             CCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhh-hhhccccCCCeEEEEccch-hHHHHHHHHHHHHhhcCCeEEE
Q 019348          189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVVS  266 (342)
Q Consensus       189 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v~  266 (342)
                      ..++++++|+|||||||.||+|+++|+++...+.... .........+|++++..|+ +|..|+ ...+.++..|+ +++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEE
Confidence            4678899999999999999999999999998755321 2233445788999999999 999998 66677799999 777


Q ss_pred             ccCCCHH-----------------------HHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCH
Q 019348          267 MGKFDIE-----------------------MALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (342)
Q Consensus       267 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~  323 (342)
                      +.+++|.                       .+++.++++++|++.++|+++..|++.......++++||.+++||+++++
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~  245 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL  245 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence            7778888                       88889999999999999999999998854444567899999999999999


Q ss_pred             HHHHHHH-HhCCCCcccccC
Q 019348          324 ELMEDCQ-KNIPGATIFQKI  342 (342)
Q Consensus       324 ~~~~~~~-~~~~~~~l~~~Y  342 (342)
                      ++.++++ +.||++++++.|
T Consensus       246 ~~~~~~~~~~~p~~~v~~~Y  265 (369)
T 3hgu_A          246 DEIKFIASEILPDCEFSASY  265 (369)
T ss_dssp             HHHHHHHHHTCTTSEEEEEE
T ss_pred             HHHHHHHHHhCCCcEEEccc
Confidence            9999999 999779999988

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.88  E-value=1.4e-22  Score=183.60  Aligned_cols=154  Identities=16%  Similarity=0.140  Sum_probs=131.6

Q ss_pred             CCCC-CCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhh-hhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348          188 SVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       188 ~~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      ...+ +++++|+|||||||.||+|++||+++.+.+..... .......++|++++..|+.|..+.+..++.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            3445 88999999999999999999999999776544321 223456788999999998766666577889999999999


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccC--CCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~--l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+.+++..+++.|+++++|+++++|+++..|++.......+  +++||.+++||+++++++.+++++.|+ +++++.|
T Consensus       161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y  238 (436)
T 3qov_A          161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSF  238 (436)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecC
Confidence            998899999999999999999999999999998875444433  789999999999999999999999996 9999988

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.87  E-value=5.3e-22  Score=179.79  Aligned_cols=153  Identities=20%  Similarity=0.217  Sum_probs=130.0

Q ss_pred             CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhh-hhhccccCCCeEEEEccch-hHHHHHHHHHHHHhhcCCeEE
Q 019348          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      ...++++++|+|||||||.||+|++||+++...+.... ....+....+|++++..|+ +|..++ ..++.++..|++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~  164 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI  164 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence            34668999999999999999999999999887644322 1223556788999999998 788777 67889999999999


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccC--CCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~--l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+.+++..+++.|+++++|+++++|+++..|++.......+  ++++|.+++||+++++++.+++++.|+ +++++.|
T Consensus       165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y  242 (437)
T 2y27_A          165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIY  242 (437)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecC
Confidence            988889999999999999999999999999998765333332  579999999999999999999999986 9999987

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.86  E-value=9.4e-22  Score=178.48  Aligned_cols=153  Identities=21%  Similarity=0.219  Sum_probs=129.7

Q ss_pred             CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhh-hhccccCCCeEEEEccch-hHHHHHHHHHHHHhhcCCeEE
Q 019348          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV  265 (342)
Q Consensus       188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v  265 (342)
                      ...++++++++|||||||.||+|++||+++...+..... ...+...++|++++..|+ +|..++ ...+.++..|++++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~  166 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV  166 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence            346688999999999999999999999998876443221 223556788999999998 577776 67889999999999


Q ss_pred             EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCcc--CCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI  342 (342)
Q Consensus       266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  342 (342)
                      +.+.+++..+++.|+++++|+++++|+++..|++.......  .+++||.+++||+++++++.+++++.|+ +++++.|
T Consensus       167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y  244 (443)
T 2y4o_A          167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIY  244 (443)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEE
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEecc
Confidence            99888999999999999999999999999999876533333  3589999999999999999999999996 9999987

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=94.53  E-value=0.25  Score=43.86  Aligned_cols=87  Identities=13%  Similarity=0.121  Sum_probs=69.5

Q ss_pred             cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (342)
Q Consensus        53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  130 (342)
                      -.+|.+.+...+..++..+...|+.++|++....+.+.  ..+...++++..|+..++++.. ..+.+.+.+++.++.++
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l  186 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDII  186 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEE
Confidence            46789999888888888887889999999998888642  2344568889999998877654 78889999999999999


Q ss_pred             EEcccchhhh
Q 019348          131 ITVPELWDKV  140 (342)
Q Consensus       131 i~~~~~~~~~  140 (342)
                      +..+.....+
T Consensus       187 ~~~Ps~~~~l  196 (437)
T 2y27_A          187 MVTPSYMLSI  196 (437)
T ss_dssp             EECHHHHHHH
T ss_pred             EECHHHHHHH
Confidence            9887665543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=93.90  E-value=0.36  Score=42.93  Aligned_cols=87  Identities=11%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (342)
Q Consensus        53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  130 (342)
                      -.+|.+.+...+..++..+...|+.++|++....+-+.  ..+...++++..|+..+++++. ..+.+.+.+++.++.++
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l  188 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII  188 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence            36789999888888888888889999999998888643  3345568888999998887664 77888999999999999


Q ss_pred             EEcccchhhh
Q 019348          131 ITVPELWDKV  140 (342)
Q Consensus       131 i~~~~~~~~~  140 (342)
                      +..+.....+
T Consensus       189 ~~~Ps~~~~l  198 (443)
T 2y4o_A          189 LVTPSYMLNL  198 (443)
T ss_dssp             EECHHHHHHH
T ss_pred             EECHHHHHHH
Confidence            9887665543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=93.55  E-value=0.42  Score=42.42  Aligned_cols=98  Identities=16%  Similarity=0.087  Sum_probs=75.6

Q ss_pred             CceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--hHHHHHHHHHHhCCeEeccCCC
Q 019348           42 SKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPV  112 (342)
Q Consensus        42 ~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~  112 (342)
                      +.++.+...+|       -.+|.+.+...+..+++.+...|+.++|++....+-+.  ..+..+++++..|+..++.++.
T Consensus        86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~  165 (436)
T 3qov_A           86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG  165 (436)
T ss_dssp             HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred             CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence            56665533322       46899999988888888888889999999998887542  3345678889999998887654


Q ss_pred             CCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348          113 YTVSELSKQVKDSNPKLVITVPELWDKV  140 (342)
Q Consensus       113 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~  140 (342)
                       ..+.+.+.+++.++.+++..+.....+
T Consensus       166 -~~~~~~~~i~~~~~t~~~~~P~~~~~l  192 (436)
T 3qov_A          166 -NSKRQIKFISDFKTTALHAIPSYAIRL  192 (436)
T ss_dssp             -CHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred             -CHHHHHHHHHHHCCCEEEECHHHHHHH
Confidence             678889999999999999887765544

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=88.40  E-value=1.6  Score=37.53  Aligned_cols=86  Identities=9%  Similarity=0.126  Sum_probs=62.8

Q ss_pred             cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccCCCCCHH--------------
Q 019348           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVS--------------  116 (342)
Q Consensus        53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~--------------  116 (342)
                      -.+|.+.+...+..++..+...|+.++|++....|-+..  .+...++++..|+.+++.+  ..+.              
T Consensus       109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~  186 (369)
T 3hgu_A          109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV  186 (369)
T ss_dssp             EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred             EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence            467888888888877777888899999999998887322  2344455588898655543  3333              


Q ss_pred             ---------HHHHHhhhcCceEEEEcccchhhh
Q 019348          117 ---------ELSKQVKDSNPKLVITVPELWDKV  140 (342)
Q Consensus       117 ---------~l~~~l~~~~~~~vi~~~~~~~~~  140 (342)
                               ++.+.+++.++.+++..+.....+
T Consensus       187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l  219 (369)
T 3hgu_A          187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL  219 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence                     666689999999999887666554

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=88.14  E-value=3.1  Score=38.06  Aligned_cols=98  Identities=18%  Similarity=0.196  Sum_probs=71.3

Q ss_pred             CceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHH--HHHHHHHhCCeEeccCCC
Q 019348           42 SKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTANPV  112 (342)
Q Consensus        42 ~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~~~  112 (342)
                      +.++++...+|       -.+|.+.+...+......+...++.++|+++...|-...+-.  .+++.+ .|+..+..+ .
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~  269 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K  269 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence            77787754323       468999887776665544333678899999888887655433  356667 998888775 5


Q ss_pred             CCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348          113 YTVSELSKQVKDSNPKLVITVPELWDKVK  141 (342)
Q Consensus       113 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  141 (342)
                      ...+.+.+.+++.++.+++..+.....+.
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  298 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAILN  298 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence            67888999999999999998877666543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=86.90  E-value=7.6  Score=35.34  Aligned_cols=97  Identities=14%  Similarity=0.159  Sum_probs=71.4

Q ss_pred             CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHH---HHHHHHHhCCeEecc
Q 019348           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA  109 (342)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l  109 (342)
                      .|+.+|++...+|       -.+|.+.+...+......   .++.++|++....|-+..+-.   .+++++..|+..+..
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  256 (539)
T 1mdb_A          180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (539)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence            4677777644322       468998887776655443   478899999888887765543   478889999988876


Q ss_pred             CCCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKV  140 (342)
Q Consensus       110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  140 (342)
                      + ....+.+...+++.++.++...+.....+
T Consensus       257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  286 (539)
T 1mdb_A          257 P-SPSPDDAFPLIEREKVTITALVPPLAMVW  286 (539)
T ss_dssp             S-SSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence            5 46788899999999999999887665543

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=86.47  E-value=8.1  Score=35.19  Aligned_cols=96  Identities=14%  Similarity=0.135  Sum_probs=71.2

Q ss_pred             CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHH---HHHHHHHhCCeEecc
Q 019348           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA  109 (342)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l  109 (342)
                      .++.+|++...+|       -.+|.+.+...+...+..   .++.++|++....|-...+-.   .+++.+..|+..+..
T Consensus       189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  265 (544)
T 3o83_A          189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA  265 (544)
T ss_dssp             CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence            4577777644322       468999888777666554   488999999998887766544   368888899988776


Q ss_pred             CCCCCHHHHHHHhhhcCceEEEEcccchhh
Q 019348          110 NPVYTVSELSKQVKDSNPKLVITVPELWDK  139 (342)
Q Consensus       110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  139 (342)
                      + ......+...+++.++..+...+.....
T Consensus       266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~  294 (544)
T 3o83_A          266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIM  294 (544)
T ss_dssp             S-SCCHHHHHHHHHHHTCCEEEECHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHCCCEEEechHHHHH
Confidence            5 4577888899999999999887765544

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=84.55  E-value=9.6  Score=34.46  Aligned_cols=96  Identities=10%  Similarity=0.109  Sum_probs=69.2

Q ss_pred             CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHH--HHHHHHhCCeEeccC
Q 019348           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC--FLGVIAIGAIASTAN  110 (342)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~--~lA~~~~G~~~v~l~  110 (342)
                      .|+.++++...+|       -.+|.+.+...+...+..+   ++.++|+++..+|-...+-..  +++++ .|+..+.. 
T Consensus       168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-  242 (517)
T 3r44_A          168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-  242 (517)
T ss_dssp             CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred             CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence            3566776533222       5789998887776665544   889999999988877655443  44444 88887766 


Q ss_pred             CCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348          111 PVYTVSELSKQVKDSNPKLVITVPELWDKV  140 (342)
Q Consensus       111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  140 (342)
                      +....+.+...+++.++.++...+.....+
T Consensus       243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  272 (517)
T 3r44_A          243 PQFDATKVWSLIVEERVCIGGAVPAILNFM  272 (517)
T ss_dssp             SSCCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCeEEEeHHHHHHHH
Confidence            457888899999999999999887766544

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=83.48  E-value=11  Score=33.91  Aligned_cols=99  Identities=15%  Similarity=0.150  Sum_probs=73.3

Q ss_pred             CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCC
Q 019348           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP  111 (342)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~  111 (342)
                      .++.+|++...+|       -.+|.+.+...+......   .++.++|+++...|-...+ +..+++++..|+..+..+ 
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-  236 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-  236 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence            5677887644323       468998888776665544   4888999999888876543 234677888999888765 


Q ss_pred             CCCHHHHHHHhhhcCceEEEEcccchhhhhc
Q 019348          112 VYTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (342)
Q Consensus       112 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  142 (342)
                      ....+.+.+.+++.++.++...+.....+..
T Consensus       237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  267 (501)
T 3ipl_A          237 KFNAEQILTMIKNERITHISLVPQTLNWLMQ  267 (501)
T ss_dssp             SCCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence            4678899999999999999998777665543

>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}

Probab=82.33  E-value=16  Score=28.73  Aligned_cols=92  Identities=16%  Similarity=0.111  Sum_probs=55.8

Q ss_pred             eEEEEccch-hHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEe------cHHH--HHHHHcCCCCCc
Q 019348          236 HVVLCVLPM-FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWV------VPPI--ILALAKNSLVRK  305 (342)
Q Consensus       236 d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~------~P~~--l~~l~~~~~~~~  305 (342)
                      .+++...+- .|..|....-..--..|..++.. ....++.+.+.++++++.++.+      ++++  ++.+++......
T Consensus        94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~  173 (215)
T 3ezx_A           94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEK  173 (215)
T ss_dssp             EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcC
Confidence            344443333 67788755555556678777765 4568899999999999998777      2222  233332221111


Q ss_pred             cCCCCceEEEeecccCCHHHHHHH
Q 019348          306 FDISSLKLVGSGAAPLGKELMEDC  329 (342)
Q Consensus       306 ~~l~~lr~~~~gG~~l~~~~~~~~  329 (342)
                      . ...++ +++||.+++++..+++
T Consensus       174 ~-~~~v~-v~vGG~~~~~~~a~~i  195 (215)
T 3ezx_A          174 L-RDSVK-CMFGGAPVSDKWIEEI  195 (215)
T ss_dssp             C-GGGSE-EEEESSSCCHHHHHHH
T ss_pred             C-CCCCE-EEEECCCCCHHHHHHh
Confidence            1 01343 7889999998765543

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=81.40  E-value=6.9  Score=35.28  Aligned_cols=98  Identities=12%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCC
Q 019348           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP  111 (342)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~  111 (342)
                      .++.++++...+|       -.+|.+.+...+.....   ..++.++|+++...|-+..+ +..+++++..|+..+.+++
T Consensus       142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  218 (512)
T 3fce_A          142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK  218 (512)
T ss_dssp             CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred             CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence            3566776533222       46899888776655544   34789999999988876543 3457888999998887765


Q ss_pred             C--CCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348          112 V--YTVSELSKQVKDSNPKLVITVPELWDKV  140 (342)
Q Consensus       112 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~  140 (342)
                      .  ..++.+...+++.++.++...+.....+
T Consensus       219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  249 (512)
T 3fce_A          219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMC  249 (512)
T ss_dssp             HHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred             HHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence            3  4677888999999999998887666543

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=81.13  E-value=8.1  Score=35.25  Aligned_cols=99  Identities=16%  Similarity=0.147  Sum_probs=69.8

Q ss_pred             CCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCC
Q 019348           41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPV  112 (342)
Q Consensus        41 p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~  112 (342)
                      ++.+|++...+|       -.+|.+.+...+......+...++.++|+++...|-...+ +...++.+..|+..+..+ .
T Consensus       189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~  267 (550)
T 3rix_A          189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R  267 (550)
T ss_dssp             TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred             CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence            356676543322       4688888776655544444345788999998888877543 345667788999888774 5


Q ss_pred             CCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348          113 YTVSELSKQVKDSNPKLVITVPELWDKV  140 (342)
Q Consensus       113 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~  140 (342)
                      ..++.+...+++.++.+++..+.....+
T Consensus       268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l  295 (550)
T 3rix_A          268 FEEELFLRSLQDYKIQSALLVPTLFSFF  295 (550)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCeEEEeCcHHHHHH
Confidence            6788899999999999999887766544

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=80.05  E-value=9.2  Score=34.46  Aligned_cols=98  Identities=12%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHH-HHHHHHHHhCCeEeccCC
Q 019348           40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP-ICFLGVIAIGAIASTANP  111 (342)
Q Consensus        40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~~  111 (342)
                      .++.++++...   +|    -.+|.+.+...+..+...   .++..+|+++...|-+..+- ..+++++..|+..+..+.
T Consensus       141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  217 (511)
T 3e7w_A          141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK  217 (511)
T ss_dssp             CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred             CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence            35666665332   22    468888887766655444   47888999999888775443 457888899998887754


Q ss_pred             C--CCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348          112 V--YTVSELSKQVKDSNPKLVITVPELWDKV  140 (342)
Q Consensus       112 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~  140 (342)
                      .  ..++.+.+.+++.++.+++..+.....+
T Consensus       218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  248 (511)
T 3e7w_A          218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC  248 (511)
T ss_dssp             HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred             hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence            3  4667788899999999998887766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-58
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	6e-50
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	8e-44
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	9e-42
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	4e-37
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-34
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	5e-33

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  197 bits (501), Expect = 2e-58
 Identities = 70/327 (21%), Positives = 129/327 (39%), Gaps = 22/327 (6%)

Query: 33  LFRNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           L R+      + A+I    D    + +S+ +    V + +++   LGI K DVV I+ P 
Sbjct: 78  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKV-----KDL 143
                +  L    IGA+ S     ++   ++  + DS+ +LVIT  E          K  
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 197

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL------SGSVTDIPDVSVKQTDAAAL 197
              A+   +   V    ++ R+   + + +  +L        +  +    ++   D   +
Sbjct: 198 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 257

Query: 198 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           LY+SG+TG  KGV+ T   ++  +     +       D +  C   +  V G S +LY  
Sbjct: 258 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGP 316

Query: 258 LQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
           L  G   +               + ++K++V + +  P  I AL    +  +   D SSL
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATI 338
           +++GS   P+  E  E   K I     
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKC 403

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  174 bits (441), Expect = 6e-50
 Identities = 65/327 (19%), Positives = 128/327 (39%), Gaps = 22/327 (6%)

Query: 33  LFRNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAP 87
           + R++    +K A+I    +     S+++ +    V +V+    + +G+ K D V ++ P
Sbjct: 65  VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
                 I  L +  IGAI S     ++ + L  ++ D + K+VIT  E     K +    
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKR 184

Query: 148 VLLGSKDKVSS----------SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL 197
           ++  +  +             +                E     T  P   V   D   L
Sbjct: 185 IVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFL 244

Query: 198 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           LY+SG+TG  KGV  +   ++  +L+   +     + D V      +  + G + ++Y  
Sbjct: 245 LYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQED-VFFTAGDIGWITGHTYVVYGP 303

Query: 258 LQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
           L  G   +         +       I++++VT ++V P  +  L +  +S +    + SL
Sbjct: 304 LLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSL 363

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATI 338
           + +GS   P+  E+ E   + I    I
Sbjct: 364 RCLGSVGEPIAAEVWEWYSEKIGKNEI 390

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  155 bits (393), Expect = 8e-44
 Identities = 66/316 (20%), Positives = 123/316 (38%), Gaps = 14/316 (4%)

Query: 21  LPS---DPSFSMVHFLFRNSASYSSKLALIDADSDE--SLSFSQFKSIVIKVSHSFRHLG 75
            PS   D   ++  FL R +A +  K  +    + E    ++++      ++    R LG
Sbjct: 2   FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 61

Query: 76  ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           +   D V     N       +  V  +GA+  TANP  +  E++  +  +  K+++  P 
Sbjct: 62  VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN 121

Query: 136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
           L   V+ +         + ++ +        +      L        +   V V +  A 
Sbjct: 122 LLPLVEAI---------RGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAAC 172

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            + Y++GTTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV    +   
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232

Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             L     V+   + D    +   +   VT    VP + LALA         + +L+ + 
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLV 292

Query: 316 SGAAPLGKELMEDCQK 331
            G +   + L+   ++
Sbjct: 293 VGGSAAPRSLIARFER 308

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  150 bits (379), Expect = 9e-42
 Identities = 71/329 (21%), Positives = 140/329 (42%), Gaps = 6/329 (1%)

Query: 17  PPLVLPSDPSFSMVHFLFRNSASYSS---KLALIDADSDESLSFSQFKSIVIKVSHSFRH 73
           P    P     +    L +    Y+     +A  DA  + +++++++  + ++++ + + 
Sbjct: 8   PAPFYP-LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR 66

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
            G+     +++ + NS+ F +  LG + IG   + AN +Y   EL   +  S P +V   
Sbjct: 67  YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 126

Query: 134 PELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF--HDLIELSGSVTDIPDVSVKQ 191
            +   K+ ++     ++     + S         + +F    L         +P+   + 
Sbjct: 127 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 186

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 251
              A ++ SSG+TG+ KGV L H+                  +    +  +  FH     
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 246

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
                 L  G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L
Sbjct: 247 FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL 306

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
             + SG APL KE+ E   K      I Q
Sbjct: 307 HEIASGGAPLSKEVGEAVAKRFHLPGIRQ 335

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  137 bits (344), Expect = 4e-37
 Identities = 67/308 (21%), Positives = 125/308 (40%), Gaps = 17/308 (5%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V+ + R +A+      AL        L+ ++ ++ V  V+      G+  +  V + APN
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S    I  L +  +GA+ +  NP    +EL++ +K       +         + +     
Sbjct: 64  SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-----RQVADAIF 118

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
             GS  ++   G + R  +  S+   IE         D   +    A + Y+SGTTG+ K
Sbjct: 119 QSGSGARIIFLGDLVRDGEPYSYGPPIE---------DPQREPAQPAFIFYTSGTTGLPK 169

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
             I+  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 170 AAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE 229

Query: 269 KFDIEMALRAIEKYRVTVW--WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
           +F    AL+ +++ +VT           LA A         + SL+ V    A +   ++
Sbjct: 230 EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVL 289

Query: 327 EDCQKNIP 334
           E   +++P
Sbjct: 290 ETVHQHLP 297

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  130 bits (327), Expect = 2e-34
 Identities = 70/308 (22%), Positives = 128/308 (41%), Gaps = 11/308 (3%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           +    L   +A Y  ++A+   +     S+ +  +   +++  F+ LGI +KD V++  P
Sbjct: 26  TFGDLLRDRAAKYGDRIAITCGN--THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
           N   F      +  +GA+   A P +  SE++   + +     I      D     +  +
Sbjct: 84  NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYII----PDAYSGFDYRS 139

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
           +    + K+ +   I  + +   F  L +L      +P+V    +D A L  S G+TG+S
Sbjct: 140 LARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVK--SSDVAFLQLSGGSTGLS 197

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ-KGNCVVS 266
           K +  TH ++I +         L      V L  LPM H + LS      +   G  VV 
Sbjct: 198 KLIPRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255

Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                 + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E  
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 327 EDCQKNIP 334
              +    
Sbjct: 316 RRVKAVFG 323

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  126 bits (316), Expect = 5e-33
 Identities = 51/313 (16%), Positives = 104/313 (33%), Gaps = 33/313 (10%)

Query: 25  PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
           P    +H LF    S   + +A++  +  E L++ +      +++  F   GI K  +V 
Sbjct: 20  PRDKTIHQLFEEQVSKRPNNVAIVCEN--EQLTYHELNVKANQLARIFIEKGIGKDTLVG 77

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           I    SI   I  L V+  G      +  Y    +   + DS  ++++T   L   + ++
Sbjct: 78  IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI 137

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
                                    V   +   +         V  K TD A ++Y+SGT
Sbjct: 138 QFNGQ--------------------VEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGT 177

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG  KG +L HK      +               +     +     +  +    L   + 
Sbjct: 178 TGNPKGTMLEHKGISNLKVFFENSLN--VTEKDRIGQFASISFDASVWEMFMALLTGASL 235

Query: 264 VVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            + +     D     + I +  +TV  + P  +        +    I S++ + +  +  
Sbjct: 236 YIILKDTINDFVKFEQYINQKEITVITLPPTYV------VHLDPERILSIQTLITAGSAT 289

Query: 322 GKELMEDCQKNIP 334
              L+   ++ + 
Sbjct: 290 SPSLVNKWKEKVT 302

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	85.62

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.6e-45  Score=345.01  Aligned_cols=309  Identities=22%  Similarity=0.289  Sum_probs=244.2

Q ss_pred             CCHHH-HHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348           27 FSMVH-FLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (342)
Q Consensus        27 ~~l~~-~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~  101 (342)
                      .|+.+ .+.++++++||++|+++..    ..+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus        71 ~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~  150 (643)
T d1pg4a_          71 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACAR  150 (643)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHH
Confidence            46655 4557788899999998542    236899999999999999999999999999999999999999999999999


Q ss_pred             hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhh-------------cc---CCC-eEEecCCCcccccccccc
Q 019348          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK-------------DL---NLP-AVLLGSKDKVSSSGLISR  164 (342)
Q Consensus       102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-------------~~---~~~-~~~~~~~~~~~~~~~~~~  164 (342)
                      +|++++|+++.++.+++.+++++++++++|++++......             ..   ... .+.+.......    ...
T Consensus       151 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~----~~~  226 (643)
T d1pg4a_         151 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----DWQ  226 (643)
T ss_dssp             HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----CCC
T ss_pred             hCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----ccc
Confidence            9999999999999999999999999999999865332211             11   111 22222221100    001


Q ss_pred             ccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccch
Q 019348          165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM  244 (342)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~  244 (342)
                      ......+........  .........++++++|+|||||||.||||+++|++++..... .....+...++|++++..|+
T Consensus       227 ~~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~-~~~~~~~~~~~d~~~~~~p~  303 (643)
T d1pg4a_         227 EGRDLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT-TFKYVFDYHPGDIYWCTADV  303 (643)
T ss_dssp             BTTEEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHH-HHHHHTTCCTTCEEEECSCT
T ss_pred             cccchhhhhhhcccC--cccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHH-HHHHhhCCCCCCEEEEeCCh
Confidence            111223334443333  344445667899999999999999999999999997655322 13334556789999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeec
Q 019348          245 FHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGA  318 (342)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG  318 (342)
                      +|++|+...++.+|..|+++++.+.    +++..+++.++++++|+++++|++++.|+++...  ...++++||.+++||
T Consensus       304 ~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G  383 (643)
T d1pg4a_         304 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVG  383 (643)
T ss_dssp             TSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEES
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEe
Confidence            9999986678899999999999753    4889999999999999999999999999987643  456799999999999


Q ss_pred             ccCCHHHHHHHHHhCC--CCcccccC
Q 019348          319 APLGKELMEDCQKNIP--GATIFQKI  342 (342)
Q Consensus       319 ~~l~~~~~~~~~~~~~--~~~l~~~Y  342 (342)
                      +++++++++++.+.++  ++++++.|
T Consensus       384 ~pl~~~~~~~~~~~~g~~~~~i~~~y  409 (643)
T d1pg4a_         384 EPINPEAWEWYWKKIGKEKCPVVDTW  409 (643)
T ss_dssp             SCCCHHHHHHHHHHTTTTCSCEEEEB
T ss_pred             CCCCHHHHHHHHHHhCCCCceEEEee
Confidence            9999999999999996  57788877

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-44  Score=335.53  Aligned_cols=309  Identities=20%  Similarity=0.291  Sum_probs=240.2

Q ss_pred             CH-HHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348           28 SM-VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (342)
Q Consensus        28 ~l-~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~~~~~~lA~~~  101 (342)
                      |+ ...+.++++++||++|+++.+    ..+++||+||.+++.++|+.|+ ++|+++||+|+++++|+++++++++||++
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~  138 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR  138 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhcc
Confidence            55 566778899999999998532    2378999999999999999997 67999999999999999999999999999


Q ss_pred             hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc--------------CCC-eEEecCCCcccccccccccc
Q 019348          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--------------NLP-AVLLGSKDKVSSSGLISRSS  166 (342)
Q Consensus       102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~  166 (342)
                      +|++++|+++.++.+++.++++++++++++++..........              ... ..........   .......
T Consensus       139 ~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  215 (640)
T d1ry2a_         139 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP---SVAFHAP  215 (640)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCS---SCCCCSS
T ss_pred             CceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccc---ccccccc
Confidence            999999999999999999999999999999986543221111              011 1111111000   0000111


Q ss_pred             ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348          167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~  246 (342)
                      ....+........  .........++++++|+|||||||.||||+++|.+++...... ........++|++++.+|++|
T Consensus       216 ~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~~  292 (640)
T d1ry2a_         216 RDLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLT-MRYTFDTHQEDVFFTAGDIGW  292 (640)
T ss_dssp             SEEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHH-HHHHSCCCSSCEEEECSCTTS
T ss_pred             ccccccccccccc--cccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHH-HHhhcCCCcccceeeccchhh
Confidence            1122222222222  3333445667899999999999999999999999987763321 233445678999999999999


Q ss_pred             HHHHHHHHHHHhhcCCeEEEccCC----CHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeeccc
Q 019348          247 VFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAP  320 (342)
Q Consensus       247 ~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~  320 (342)
                      ++|+...++.+|..|+++++.+..    ++..+++.++++++|++.++|++++.|.+....  ...++++||.+++||++
T Consensus       293 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~  372 (640)
T d1ry2a_         293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP  372 (640)
T ss_dssp             HHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSC
T ss_pred             hhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEeccc
Confidence            999867788999999999887643    789999999999999999999999999876543  45679999999999999


Q ss_pred             CCHHHHHHHHHhCC--CCcccccC
Q 019348          321 LGKELMEDCQKNIP--GATIFQKI  342 (342)
Q Consensus       321 l~~~~~~~~~~~~~--~~~l~~~Y  342 (342)
                      +++++.+++++.+|  +.++++.|
T Consensus       373 l~~~~~~~~~~~~g~~~~~i~~~y  396 (640)
T d1ry2a_         373 IAAEVWEWYSEKIGKNEIPIVDTY  396 (640)
T ss_dssp             CCHHHHHHHHHTTSCSSSCEEECB
T ss_pred             CcHHHHHHHHHhcCCCcceEEeee
Confidence            99999999999997  34566665

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-42  Score=319.82  Aligned_cols=299  Identities=22%  Similarity=0.317  Sum_probs=246.2

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCC--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~  104 (342)
                      .||.++|.+.++++||++|+++.+++  +++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        11 ~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~   90 (534)
T d1v25a_          11 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA   90 (534)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCc
Confidence            78999999999999999999987644  5699999999999999999999999999999999999999999999999999


Q ss_pred             eEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccC
Q 019348          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (342)
Q Consensus       105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (342)
                      +++|++|.++.+++.++++.+++++++++...........     ..........         ...........   ..
T Consensus        91 v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~---~~  158 (534)
T d1v25a_          91 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK---------APEGYLAYEEA---LG  158 (534)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC---------CCTTCEEHHHH---CC
T ss_pred             EEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecc---------ccccccccccc---cc
Confidence            9999999999999999999999999999988777655432     2222222221         01111111111   11


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                        .........++++++|+|||||||.||||+++|.+++..+..............|++++.+|++|.+++ ...+..+.
T Consensus       159 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~-~~~~~~~~  235 (534)
T d1v25a_         159 --EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATL  235 (534)
T ss_dssp             --SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHHH
T ss_pred             --ccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccc-cccceeee
Confidence              222334566789999999999999999999999999877555445555556789999999999999999 55555666


Q ss_pred             cCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcc
Q 019348          260 KGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (342)
Q Consensus       260 ~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l  338 (342)
                      .|+++++. +.+++..++..+.++++|++.++|.++..++........++++||.+++||++++++..+++++.  +.++
T Consensus       236 ~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i  313 (534)
T d1v25a_         236 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEV  313 (534)
T ss_dssp             HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEE
T ss_pred             ecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCee
Confidence            66655554 66899999999999999999999999999998877777889999999999999999999999876  4788


Q ss_pred             cccC
Q 019348          339 FQKI  342 (342)
Q Consensus       339 ~~~Y  342 (342)
                      +++|
T Consensus       314 ~~~y  317 (534)
T d1v25a_         314 RQGY  317 (534)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            8876

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.1e-41  Score=315.19  Aligned_cols=313  Identities=23%  Similarity=0.363  Sum_probs=250.7

Q ss_pred             CCCCCCCCHHHHHhhhcccC---CCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHH
Q 019348           21 LPSDPSFSMVHFLFRNSASY---SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL   97 (342)
Q Consensus        21 ~~~~~~~~l~~~l~~~~~~~---p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~l   97 (342)
                      +++.++.|++++|.+.++++   |+++|+++...++++||+||.+++.++|..|++.|+++||+|+++++|+++++++++
T Consensus        11 ~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~l   90 (541)
T d1lcia_          11 FYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL   90 (541)
T ss_dssp             SSCCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHH
Confidence            33333469999999998877   788899988777899999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----C-CCeEEecCCCccccccccccccccccHH
Q 019348           98 GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFH  172 (342)
Q Consensus        98 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (342)
                      ||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+.    . ...+.+....        .....+..+.
T Consensus        91 A~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  162 (541)
T d1lcia_          91 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK--------TDYQGFQSMY  162 (541)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS--------SCBTTBEEHH
T ss_pred             HHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCC--------ccccccchhh
Confidence            9999999999999999999999999999999999999887665443    2 2223222211        1223333443


Q ss_pred             HHHhccCC-----CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh-hccccCCCeEEEEccchhH
Q 019348          173 DLIELSGS-----VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-QELVGELDHVVLCVLPMFH  246 (342)
Q Consensus       173 ~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~  246 (342)
                      ........     ..........++++++|+|||||||.||+|++||++++......... .......++++++.+|++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  242 (541)
T d1lcia_         163 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH  242 (541)
T ss_dssp             HHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred             hhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccc
Confidence            33322110     01122334556889999999999999999999999998764432211 2223567899999999999


Q ss_pred             HHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHH
Q 019348          247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM  326 (342)
Q Consensus       247 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~  326 (342)
                      ..+. ...+..+..|+.++.....+....+..+.++++|.+.++|.++..++........+++++|.+++||++++++..
T Consensus       243 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~  321 (541)
T d1lcia_         243 GFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVG  321 (541)
T ss_dssp             HHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHH
T ss_pred             cccc-cccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccc
Confidence            9998 778888888999998888999999999999999999999999999999988888889999999999999999999


Q ss_pred             HHHHHhCCCCcccccC
Q 019348          327 EDCQKNIPGATIFQKI  342 (342)
Q Consensus       327 ~~~~~~~~~~~l~~~Y  342 (342)
                      +++.++++...++++|
T Consensus       322 ~~~~~~~~~~~~~~~Y  337 (541)
T d1lcia_         322 EAVAKRFHLPGIRQGY  337 (541)
T ss_dssp             HHHHHHTTCSCCBCEE
T ss_pred             cccccccCCceeeecC
Confidence            9999999866788776

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.9e-41  Score=311.18  Aligned_cols=294  Identities=23%  Similarity=0.290  Sum_probs=241.7

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .||.++|.++++++||++|+++.  ++++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~  102 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            59999999999999999999997  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----------CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----------NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (342)
                      +|++|..+.+++.++++.++++++++++.........          .........           .......+.+.. 
T Consensus       103 vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-  170 (536)
T d1mdba_         103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAG-----------EAEEFLPLEDLH-  170 (536)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEES-----------CCTTSEEGGGCC-
T ss_pred             EecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeee-----------ccccccchhhcc-
Confidence            9999999999999999999999999986543321110          011111110           011111111111 


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHH-HH
Q 019348          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LY  255 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~-~~  255 (342)
                        .  .........++++++|+|||||||.||+|++||.++...+..  ........++|++++..|++|.+++... ++
T Consensus       171 --~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~  244 (536)
T d1mdba_         171 --T--EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKR--SVEVCWLDHSTVYLAALPMAHNYPLSSPGVL  244 (536)
T ss_dssp             --C--CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHH--HHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred             --c--CCcCCCccCccchHHhhhcccccccceecccccccccccccc--cccccccccccccccccccccccceeecccc
Confidence              1  222334567889999999999999999999999999998665  4455566899999999999999987443 44


Q ss_pred             HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (342)
Q Consensus       256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  335 (342)
                      ..+..|.+++..+.+++..++..+++++++.+..+|..+..+..........+++++.+++||+++++...+++.+.+| 
T Consensus       245 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~-  323 (536)
T d1mdba_         245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-  323 (536)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-
T ss_pred             ccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccC-
Confidence            5555578888888899999999999999999999999999988887777778999999999999999999999999998 


Q ss_pred             Cccccc
Q 019348          336 ATIFQK  341 (342)
Q Consensus       336 ~~l~~~  341 (342)
                      ......
T Consensus       324 ~~~~~~  329 (536)
T d1mdba_         324 CTLQQV  329 (536)
T ss_dssp             SEEEEE
T ss_pred             ceeeec
Confidence            554443

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=7.3e-40  Score=301.25  Aligned_cols=296  Identities=18%  Similarity=0.234  Sum_probs=240.9

Q ss_pred             eeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC
Q 019348           11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI   90 (342)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~   90 (342)
                      +|..++...++|+.  .||.++|.++++++||++|+++.  ++++||+||.+++.++|..|++.|+++||+|+++++|++
T Consensus         9 ~~~~~~~~~~~~~~--~tl~~l~~~~a~~~Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~   84 (514)
T d1amua_           9 LFAVNNTKAEYPRD--KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI   84 (514)
T ss_dssp             HHHTTCCCCCCCTT--CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred             HHHhcCCCCCCCCC--CcHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCH
Confidence            34466667788888  99999999999999999999997  889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCcccccccccccccccc
Q 019348           91 HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS  170 (342)
Q Consensus        91 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (342)
                      +|+++++||+++|++++|+++.++.+++.++++.+++++++++......+................              
T Consensus        85 ~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~--------------  150 (514)
T d1amua_          85 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDT--------------  150 (514)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCST--------------
T ss_pred             HHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccccccccccccc--------------
Confidence            999999999999999999999999999999999999999999998887776554322221111000              


Q ss_pred             HHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHH
Q 019348          171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL  250 (342)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~  250 (342)
                          .....  .........++++++|+|||||||.||+|.+||.++...+..  .........++++++..|++|..++
T Consensus       151 ----~~~~~--~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~  222 (514)
T d1amua_         151 ----IKIRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVF--FENSLNVTEKDRIGQFASISFDASV  222 (514)
T ss_dssp             ----TTTSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHH--HHHTSCCCTTCEEEECSCTTSTHHH
T ss_pred             ----ccccc--cccCCCCCCcccceEEEEccCCCCCccccccccccccccccc--ccccccccccccccceecccccccc
Confidence                00000  111222345789999999999999999999999999998655  5556666889999999999999998


Q ss_pred             HHHHHHHhhcCCeEEEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHH
Q 019348          251 SVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME  327 (342)
Q Consensus       251 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~  327 (342)
                       ..++.++..|+++++...   .+....++.+..+.++.+..+|.....      ....++.+++.+++||+++++++.+
T Consensus       223 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~  295 (514)
T d1amua_         223 -WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVN  295 (514)
T ss_dssp             -HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHH
T ss_pred             -ccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc------ccccccccccEEEEecccCCHHHhh
Confidence             778888999999998753   567888999999999999999986443      2345788999999999999999998


Q ss_pred             HHHHhCCCCcccccC
Q 019348          328 DCQKNIPGATIFQKI  342 (342)
Q Consensus       328 ~~~~~~~~~~l~~~Y  342 (342)
                      ++.+.   ..++++|
T Consensus       296 ~~~~~---~~~~~~y  307 (514)
T d1amua_         296 KWKEK---VTYINAY  307 (514)
T ss_dssp             HHTTT---SEEEEEE
T ss_pred             hhccc---eeEEEee
Confidence            88774   5666655

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=7.4e-40  Score=299.80  Aligned_cols=294  Identities=22%  Similarity=0.299  Sum_probs=243.4

Q ss_pred             CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (342)
Q Consensus        27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  106 (342)
                      .||.++|.++++++||++|+++.+.++++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            48999999999999999999988767899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCHHHHHHHhhhcCceEEEEcccchhhh--h-ccC-CCeEEecCCCccccccccccccccccHHHHHhcc---C
Q 019348          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKV--K-DLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS---G  179 (342)
Q Consensus       107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  179 (342)
                      +|++|.++.+++.+++++++++++|++.......  . ... .+.+.+                     .++....   .
T Consensus        82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---------------------~~~~~~~~~~~  140 (503)
T d3cw9a1          82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFL---------------------GDLVRDGEPYS  140 (503)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEH---------------------HHHEETTEECC
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccc---------------------hhhhhhhcccc
Confidence            9999999999999999999999999986543221  1 111 112211                     1111110   0


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (342)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  259 (342)
                      ...........++++++++|||||||.||+|.++|.++...+..............+++++.+|++|..+.....+.+..
T Consensus       141 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  220 (503)
T d3cw9a1         141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA  220 (503)
T ss_dssp             CSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHH
T ss_pred             cCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccc
Confidence            00222334567789999999999999999999999999988665444434445677999999999998888677888899


Q ss_pred             cCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348          260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (342)
Q Consensus       260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~  337 (342)
                      .++++++.+.+++..++..+.+++++.+..+|..+..+.....  .....+++||.+++||++++++....+++.++ ..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~-~~  299 (503)
T d3cw9a1         221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GE  299 (503)
T ss_dssp             TTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCC-SE
T ss_pred             cccccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccc-cc
Confidence            9999999999999999999999999999999999887665432  34556789999999999999999999999997 67


Q ss_pred             ccccC
Q 019348          338 IFQKI  342 (342)
Q Consensus       338 l~~~Y  342 (342)
                      +.+.|
T Consensus       300 ~~~~y  304 (503)
T d3cw9a1         300 KVNIY  304 (503)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            77665

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=85.62  E-value=0.67  Score=39.93  Aligned_cols=103  Identities=10%  Similarity=0.050  Sum_probs=73.3

Q ss_pred             hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348          211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW  288 (342)
Q Consensus       211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~  288 (342)
                      .+|++.+...+..++... ..++.++|++....+-..  .+...+++++..|+..+.. +.+..+.+...++..++.+++
T Consensus        47 ~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi  124 (541)
T d1lcia_          47 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF  124 (541)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred             EeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence            478888888766543222 233678898888776543  3336788999999988777 457889999999999999999


Q ss_pred             ecHHHHHHHHcCCCCCccCCCCceEEEeecc
Q 019348          289 VVPPIILALAKNSLVRKFDISSLKLVGSGAA  319 (342)
Q Consensus       289 ~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~  319 (342)
                      +....+..+.+..    ..++.++.+++...
T Consensus       125 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~  151 (541)
T d1lcia_         125 VSKKGLQKILNVQ----KKLPIIQKIIIMDS  151 (541)
T ss_dssp             ECGGGHHHHHHHH----HHCTTCCEEEETTC
T ss_pred             eeccccccchhcc----ccccccceeeeecC
Confidence            9998777665532    23455666665443