Citrus Sinensis ID: 019365

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccEEHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHccccccccEEEEEcccccccccEEEEcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHccccccEEEcccHHHHEEEEEHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEEEEccccccccccEEcccHEHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKNCERIANLALAGLtlapllvkvdpnLNVILTACLTVYVGcyrsvkptppsetmsnehamrfpfVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKrflpnhwnedliiwhfpyfrsleieFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIemlslgsfkTGAILLAGLFVYDIFWVFFTPVMVSVAKSfdapikllfptrdtarpfsmlglgdiviPGIFVALALRfdvsrgkgsryFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLlefdesktAAVVSQesgdaktskkve
Flexible Loop (DISEMBL)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAavvsqesgdaktskkve
Low Complexity Region (SEG)
MKNCERIanlalagltlapllVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMllslfllfkflskDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE
Disordered region (IsUnstruct)
*****RIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSV*************AMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFD**********************
Disordered Region (DISOPRED)
*****R*ANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYR***************AMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLE************************
Disordered Region (DISEMBL)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDES********************
Disordered Region (DISPRO)
*KNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFD**********************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
O81062	344	Signal peptide peptidase	yes	no	0.991	0.985	0.815	1e-157
Q6ZGL9	343	Signal peptide peptidase	yes	no	1.0	0.997	0.795	1e-151
B9FJ61	343	Signal peptide peptidase	yes	no	1.0	0.997	0.790	1e-150
Q8TCT9	377	Minor histocompatibility	yes	no	0.915	0.830	0.439	3e-67
Q9D8V0	378	Minor histocompatibility	yes	no	0.859	0.777	0.455	1e-65
P49049	468	Intramembrane protease 2	yes	no	0.555	0.405	0.464	9e-40
Q9UTA3	295	Probable intramembrane pr	yes	no	0.795	0.922	0.330	3e-37
P34248	587	Probable intramembrane pr	yes	no	0.520	0.303	0.359	1e-26
Q7G7C7	371	Signal peptide peptidase-	no	no	0.769	0.708	0.314	2e-24
Q3TD49	578	Signal peptide peptidase-	no	no	0.459	0.271	0.359	5e-23

>sp|O81062|SIP_ARATH Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1

 Score =  555 bits (1431), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/342 (81%), Positives = 312/342 (91%), Gaps = 3/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER ANLALAGLTLAPL+V+V+PNLNVILTAC+TVYVGC+RSVK TPP+ETMS EHA
Sbjct: 1   MKNCERFANLALAGLTLAPLVVRVNPNLNVILTACITVYVGCFRSVKDTPPTETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVNAVLT YFFVLGI+ALSAT+LPA++RFLPN WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           +LI+W FPYF+SLE+EFT+SQ++A IPGTFFCAWYA +KHWLANN LGL+FCIQGIEMLS
Sbjct: 121 NLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D  RP+SMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSR +  +YF SAF+GY VG++LTI+VMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQPALLYIVPAVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLA+HCIWNG++K LL FDESKT    + ES   KTS++V 
Sbjct: 301 GFLASHCIWNGDIKPLLAFDESKTEEATTDES---KTSEEVN 339

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm (By similarity). Plays a critical role in the development and function of the reproductive tissues, especially in pollen development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|Q6ZGL9|SIP1_ORYSJ Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1

 Score =  533 bits (1374), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 273/343 (79%), Positives = 303/343 (88%), Gaps = 1/343 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MK  ER ANLALAGL+LAPL+VKV+PN+NVILTACL VYVGCYRSVKPTPPSETMS EHA
Sbjct: 1   MKTHERAANLALAGLSLAPLVVKVEPNVNVILTACLAVYVGCYRSVKPTPPSETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVNAVLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           + I+W  P+F SL +EFT+SQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct: 121 NAIVWCAPFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQPALLYIVP VI
Sbjct: 241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESK-TAAVVSQESGDAKTSKKVE 342
           GF+A HC+WNGEVK LLE++ESK       +E  D+K +KK E
Sbjct: 301 GFVAVHCLWNGEVKPLLEYNESKAEEEDAVEEDTDSKQNKKEE 343

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|B9FJ61|SIP2_ORYSJ Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1

 Score =  530 bits (1365), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/343 (79%), Positives = 300/343 (87%), Gaps = 1/343 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MK  ER ANLALAGL+LAPL+VKV+PN NVILTACL VYVGCYRSVKPTPP+ETMS EHA
Sbjct: 1   MKTHERAANLALAGLSLAPLVVKVNPNANVILTACLAVYVGCYRSVKPTPPAETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVN VLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           + I+W  P F SL +EFTRSQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct: 121 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILL+GLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQPALLYIVP VI
Sbjct: 241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESK-TAAVVSQESGDAKTSKKVE 342
           GF+A HC+WNGEVK LLE++ESK       +E  D+K +KK E
Sbjct: 301 GFVAVHCLWNGEVKPLLEYNESKAEEEEACEEDTDSKQNKKKE 343

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8TCT9|HM13_HUMAN Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1

 Score =  255 bits (652), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 148/337 (43%), Positives = 204/337 (60%), Gaps = 24/337 (7%)

Query: 29  NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLS 82
           +++L A L ++ G  RSV+       +   ET+++  A RFP + S  LL L+L FK  S
Sbjct: 38  SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query: 83  KDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW---NEDLIIWHFPYFRSLEI---E 136
           ++ +N +L+ YFFVLGI+ALS TI P + +F P  +      L+          EI   E
Sbjct: 98  QEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYE 157

Query: 137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
           F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct: 158 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query: 197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALA 250
           YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGD+VIPGIF+AL 
Sbjct: 218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEANNFAMLGLGDVVIPGIFIALL 276

Query: 251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
           LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct: 277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query: 310 NGEVKQLLEFDESK----TAAVVSQESGDAKTSKKVE 342
            GEV ++  ++ES      A   S+E  +A  SK +E
Sbjct: 337 KGEVTEMFSYEESNPKDPAAVTESKEGTEASASKGLE 373

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. May play a role in graft rejection (By similarity). May be necessary for the removal of the signal peptide that remains attached to the hepatitis C virus core protein after the initial proteolytic processing of the polyprotein. Involved in the intramembrane cleavage of the integral membrane protein PSEN1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9D8V0|HM13_MOUSE Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1

 Score =  250 bits (638), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/314 (45%), Positives = 195/314 (62%), Gaps = 20/314 (6%)

Query: 29  NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLS 82
           +++L A L ++ G  RSV+       +   ET+++  A RFP + S  LL L+L FK  S
Sbjct: 38  SLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query: 83  KDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW---NEDLIIWHFPYFRSLEI---E 136
           ++ +N +L+ YFFVLGI+ALS TI P + +F P ++      L+          EI   E
Sbjct: 98  QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query: 137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
           F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct: 158 FDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query: 197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALA 250
           YDIFWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct: 218 YDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query: 251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
           LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct: 277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query: 310 NGEVKQLLEFDESK 323
            GEV ++  ++ES 
Sbjct: 337 KGEVAEMFSYEESN 350

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. Involved in the intramembrane cleavage of the integral membrane protein PSEN1 (By similarity). May play a role in graft rejection.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P49049|IMP2_CAEEL Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1

 Score =  164 bits (415), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 124/209 (59%), Gaps = 19/209 (9%)

Query: 134 EIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAG 193
           +I+F R  IIA +  +     +  ++HW+ NN +G++F I GIE L L SFK G++LL G
Sbjct: 242 KIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGSLLLVG 301

Query: 194 LFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT---RD---TARPFSMLGLGDIVIPGIFV 247
           LF YDIFWVF T VM SVAK  DAPI L FP    R+    A   SMLGLGDIVIPGIF+
Sbjct: 302 LFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFI 361

Query: 248 ALALRFD-----------VSRG--KGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLY 294
           AL  RFD             +G  KG  YF    + Y  GL +T+ VM+ F+AAQPALLY
Sbjct: 362 ALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQPALLY 421

Query: 295 IVPAVIGFLAAHCIWNGEVKQLLEFDESK 323
           +VP  +       +  GE+  L  +DES+
Sbjct: 422 LVPCCLFVPLLLAVIRGELSALWNYDESR 450

May act as intramembrane protease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9UTA3|YL8H_SCHPO Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.17 PE=3 SV=1

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 149/309 (48%), Gaps = 37/309 (11%)

Query: 33  TACLTVYVGCYRSVKPTPPSET--MSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVL 90
           +A  TVY+G   S +   P E   ++   A+ FP  G   L+ ++L  ++LSK+ +  +L
Sbjct: 9   SALFTVYIGAKWSAQEEEPEEKQLINKRLAVLFPIFGGVTLVLMYLALRYLSKEYIQLIL 68

Query: 91  TCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTF 150
             Y       A  A+I+  V+ F P                      T  +I A +    
Sbjct: 69  QGY-------ASLASIICFVRSFNPKT--------------------TFGKITATMSSIA 101

Query: 151 FCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVS 210
              +Y   KHW+A+N L  A     I ++ + S+ TGA+LL  LF YDI++VF T VMV+
Sbjct: 102 IALFYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLLGALFFYDIYFVFGTEVMVT 161

Query: 211 VAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSR--------GKGSR 262
           VA   D P K + P        SMLGLGDIV+PG+ +AL  RFD+           K S 
Sbjct: 162 VATGIDIPAKYVLPQFKNPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHST 221

Query: 263 YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDES 322
           YF++ F+ Y +GL +T   + +F+AAQPALLY+ PA I        +  E+K L  F   
Sbjct: 222 YFRNTFIAYGLGLGVTNFALYYFKAAQPALLYLSPACIVAPLLTAWYRDELKTLFSFRSE 281

Query: 323 KTAAVVSQE 331
                  Q+
Sbjct: 282 TEDETDEQD 290

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P34248|YKK0_YEAST Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 28/206 (13%)

Query: 155 YASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS 214
           Y S   WL +N + +   I  I  L L + K+GA++L  LF YDI +VF T VMV+VA +
Sbjct: 323 YLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFVFGTDVMVTVATN 382

Query: 215 FDAPIKLLFPTR-DTAR---PFSMLGLGDIVIPGIFVALALRFDVSR------------- 257
            D P+KL  P + +TA+    FS+LGLGDI +PG+F+A+  ++D+ +             
Sbjct: 383 LDIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFL 442

Query: 258 --GKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPA-VIGFLAAHCIWNGEVK 314
                 +YF +A + Y   LV  ++ ++ F  AQPALLYIVP+ +I  +   C WN + K
Sbjct: 443 NWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLLISTILVAC-WNKDFK 501

Query: 315 QL-------LEFDESKTAAVVSQESG 333
           Q        +E D+S   A+  +E+ 
Sbjct: 502 QFWNFQYDTIEVDKSLKKAIEKKENS 527

May act as intramembrane protease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q7G7C7|SIPL1_ORYSJ Signal peptide peptidase-like 1 OS=Oryza sativa subsp. japonica GN=SPPL1 PE=2 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 146/337 (43%), Gaps = 74/337 (21%)

Query: 27  NLNVILTACLTVYVGCYRSVKP----------TPPSETMSNEHAMRFPFVGSAMLLSLFL 76
           +L +ILTA    Y    R++            +  S T+    A+  P   S  LL +F 
Sbjct: 15  SLALILTAVSVAYASASRALDHGREMERNLDFSEASITLDRSQALMIPLASSCSLLLMFY 74

Query: 77  LFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIE 136
           LF  +S      ++T +  V   +AL   + P V     N     L +      R     
Sbjct: 75  LFSSVSH-----LVTAFTAVASAMALFFCLSPYV-----NCVRSRLGVGDPFVSRCCSKP 124

Query: 137 FTRSQ--IIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGL 194
           FTR Q  ++A   GT   AW  S  HWL NN LG++ CI  +  + L + K  A+LL  L
Sbjct: 125 FTRLQGLLVAICVGTVV-AWLVS-GHWLLNNLLGISICIAFVSHVRLPNIKICALLLVCL 182

Query: 195 FVYDIFWVFFTP------VMVSVA------------------------KSFDAPIKLLFP 224
           FVYD+FWVFF+       VMVSVA                        K  + P+KL+FP
Sbjct: 183 FVYDVFWVFFSERFFGANVMVSVATQKASNPVHTVANKLSLPGLQLITKKLELPVKLVFP 242

Query: 225 TR--------DTARPFSMLGLGDIVIPGIFVALALRFDVSR------------GKGSRYF 264
                      +   + MLGLGD+ IPG+ +AL L FD  +             K  +Y 
Sbjct: 243 RSLMGGLAPGSSPGDYMMLGLGDMAIPGMLLALVLSFDHRKIKDMSVSQDMPPSKQRKYV 302

Query: 265 KSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIG 301
             A  GY VGLV  +      Q+ QPALLY+VP+ +G
Sbjct: 303 WYALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLG 339

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q3TD49|SPP2B_MOUSE Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 95/178 (53%), Gaps = 21/178 (11%)

Query: 157 SQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VM 208
            Q  W+  +TLG+AFC+  ++ + L +FK   +LL  LF+YDIF+VF TP        +M
Sbjct: 311 DQWAWVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFIYDIFFVFITPFLTKSGNSIM 370

Query: 209 VSVAKSFDA-------PIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDV 255
           V VA            P+ L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+
Sbjct: 371 VEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDI 430

Query: 256 SRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 313
                  YF +  + Y +GL++T + +   Q  QPALLY+VP  +       +W  E+
Sbjct: 431 QVQSSRIYFVACTIAYGLGLLVTFVALVLMQRGQPALLYLVPCTLLTSCTVALWRREL 488

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. Functions in ITM2B and TNF processing. Catalyzes the intramembrane cleavage of the anchored fragment of shed TNF-alpha (TNF), which promotes the release of the intracellular domain (ICD) for signaling to the nucleus. May play a role in the regulation of innate and adaptive immunity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
225436624	341	PREDICTED: minor histocompatibility anti	0.997	1.0	0.912	1e-175
224105961	341	predicted protein [Populus trichocarpa]	0.997	1.0	0.909	1e-173
255572209	341	Minor histocompatibility antigen H13, pu	0.997	1.0	0.894	1e-171
224055311	341	predicted protein [Populus trichocarpa]	0.997	1.0	0.903	1e-171
359807234	341	uncharacterized protein LOC100807073 [Gl	0.997	1.0	0.903	1e-170
356515573	341	PREDICTED: minor histocompatibility anti	0.997	1.0	0.888	1e-169
356507877	341	PREDICTED: minor histocompatibility anti	0.997	1.0	0.891	1e-169
388519675	341	unknown [Lotus japonicus]	0.997	1.0	0.871	1e-166
388492738	341	unknown [Lotus japonicus]	0.997	1.0	0.871	1e-165
449437032	341	PREDICTED: signal peptide peptidase-like	0.991	0.994	0.882	1e-165

>gi|225436624|ref|XP_002280005.1| PREDICTED: minor histocompatibility antigen H13 [Vitis vinifera] gi|296083844|emb|CBI24232.3| unnamed protein product [Vitis vinifera]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 312/342 (91%), Positives = 331/342 (96%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER+ANL LAGLTLAPL++KVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERLANLGLAGLTLAPLVMKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSAT+LPA++R+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATLLPAIRRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D IIWHFPYFRSLEIEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DPIIWHFPYFRSLEIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGKG++YFKSAFLGYT GLV+TI+VMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDVSRGKGNQYFKSAFLGYTTGLVVTIVVMNWFQAAQPALLYIVPAVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GF+AAHCIWNGEVK LLEFDESKTA+  S++ GD K+SKKVE
Sbjct: 301 GFMAAHCIWNGEVKPLLEFDESKTAS-SSKDDGDEKSSKKVE 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105961|ref|XP_002313995.1| predicted protein [Populus trichocarpa] gi|118487274|gb|ABK95465.1| unknown [Populus trichocarpa] gi|222850403|gb|EEE87950.1| predicted protein [Populus trichocarpa]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 311/342 (90%), Positives = 325/342 (95%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER+ANLALAGLTLAPL VKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERVANLALAGLTLAPLFVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIVALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I WHFPYF SLEIEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVISWHFPYFHSLEIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT DTARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADTARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGK S+YFKSAFLGYT G+VLTIIVMNWFQAAQPALLYIVPA I
Sbjct: 241 VIPGIFVALALRFDVSRGKESQYFKSAFLGYTAGVVLTIIVMNWFQAAQPALLYIVPAAI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLAAH +WNGEVK L+EFDESKTAA  SQE  +  +SKKVE
Sbjct: 301 GFLAAHVVWNGEVKPLMEFDESKTAA-SSQEDSETSSSKKVE 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572209|ref|XP_002527044.1| Minor histocompatibility antigen H13, putative [Ricinus communis] gi|223533606|gb|EEF35344.1| Minor histocompatibility antigen H13, putative [Ricinus communis]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 306/342 (89%), Positives = 327/342 (95%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN+ALAGLTLAPL+VKVDPNLNVILTACL VYVGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNGERLANIALAGLTLAPLVVKVDPNLNVILTACLAVYVGCYRSVKPTPPAETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I WHFPYFRSLEIEFTRSQ++A+IPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVITWHFPYFRSLEIEFTRSQVVASIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGK S+YFKSAFLGYT G+VLTI+VMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDVSRGKDSQYFKSAFLGYTAGVVLTIVVMNWFQAAQPALLYIVPAVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLAAH IWNGEVK L+EFDESKTAA  +QES ++ ++KKVE
Sbjct: 301 GFLAAHVIWNGEVKPLMEFDESKTAA-STQESSESNSAKKVE 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055311|ref|XP_002298474.1| predicted protein [Populus trichocarpa] gi|222845732|gb|EEE83279.1| predicted protein [Populus trichocarpa]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/342 (90%), Positives = 322/342 (94%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCERIAN ALAGLTLAPL VKVDPNLNVILTACL VYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERIANFALAGLTLAPLFVKVDPNLNVILTACLAVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIVALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I W+FPYFRSL+IEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVISWNFPYFRSLDIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGK S+YFKSAFLGY  GLVLTIIVMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDVSRGKDSQYFKSAFLGYAAGLVLTIIVMNWFQAAQPALLYIVPAVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLAAH +WNGEVK L+EFDESKT AV SQE     +SKKVE
Sbjct: 301 GFLAAHVLWNGEVKPLMEFDESKT-AVSSQEDSGTSSSKKVE 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807234|ref|NP_001241109.1| uncharacterized protein LOC100807073 [Glycine max] gi|255636576|gb|ACU18626.1| unknown [Glycine max]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 309/342 (90%), Positives = 326/342 (95%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLA+AGLTLAPL+VKVD N+NVILTACLTVYVGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLAVAGLTLAPLIVKVDSNVNVILTACLTVYVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLT YFF+LGI+ALSAT+L +VKRFLP HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTGYFFLLGIVALSATLLSSVKRFLPKHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLEIEFT+SQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DPIVWRFPYFRSLEIEFTKSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGK  +YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPSVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLAAHCIWNG+VKQLLEFDESKTA   SQE GDAK+SKKVE
Sbjct: 301 GFLAAHCIWNGDVKQLLEFDESKTAK-SSQEEGDAKSSKKVE 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515573|ref|XP_003526473.1| PREDICTED: minor histocompatibility antigen H13-like [Glycine max]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 304/342 (88%), Positives = 325/342 (95%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLALAGLTLAPL+VKVDPNLNVILTACLTV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLALAGLTLAPLVVKVDPNLNVILTACLTVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP +KRFLP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I+WHFPYFRSLEIEFT+SQ++A IPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVIVWHFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGK  +YFKSAF+GYTVGLVLTI+VMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQPALLYIVPSVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLAAHC+WNG+VKQLLEFDESKTA    QES D K+SKKVE
Sbjct: 301 GFLAAHCLWNGDVKQLLEFDESKTAN-SPQESDDDKSSKKVE 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507877|ref|XP_003522689.1| PREDICTED: minor histocompatibility antigen H13-like [Glycine max]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 305/342 (89%), Positives = 323/342 (94%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLALAGLTLAPL+VKVDPNLNVILTA LTV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLALAGLTLAPLVVKVDPNLNVILTASLTVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP +KRFLP HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           DLI+W FPYFRSLEIEFT+SQ++A IPGTFFCAWYA QKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DLIVWRFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGK  +YFKSAF+GYTVGLVLTI+VMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQPALLYIVPSVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLAAHC+WNG+VKQLLEFDESKTA    QES D K+SKKVE
Sbjct: 301 GFLAAHCLWNGDVKQLLEFDESKTAN-SPQESADDKSSKKVE 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519675|gb|AFK47899.1| unknown [Lotus japonicus]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/342 (87%), Positives = 319/342 (93%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN AL GLTLAPL+VKVDPNLNVILTAC+TV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERLANFALLGLTLAPLVVKVDPNLNVILTACITVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP++KRFLPNHWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTSYFFVLGIVALSATLLPSIKRFLPNHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLE+EFTRSQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DNIVWRFPYFRSLEVEFTRSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D  RPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAVRPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGK  +YFKSAFLGY VG++LTI+VMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIVVMNWFQAAQPALLYIVPSVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLAAHC+WNGEVKQLLEFDESKTA    QE  DAK +KK E
Sbjct: 301 GFLAAHCVWNGEVKQLLEFDESKTAN-SPQEEVDAKVTKKDE 341

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492738|gb|AFK34435.1| unknown [Lotus japonicus]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 298/342 (87%), Positives = 319/342 (93%), Gaps = 1/342 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN AL GLTLAPL+VKVDPNLNVILTAC+TV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERLANFALLGLTLAPLVVKVDPNLNVILTACITVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP++KRFLPNHWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPSIKRFLPNHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLE+EFTRSQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQ IEMLS
Sbjct: 121 DNIVWRFPYFRSLEVEFTRSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQEIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D  RPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAVRPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFDVSRGK  +YFKSAFLGY VG++LTI+VMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIVVMNWFQAAQPALLYIVPSVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 342
           GFLAAHC+WNGEVKQLLEFDESKTA   SQE  DAK +KK E
Sbjct: 301 GFLAAHCVWNGEVKQLLEFDESKTAN-SSQEEVDAKVTKKDE 341

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437032|ref|XP_004136296.1| PREDICTED: signal peptide peptidase-like [Cucumis sativus]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/341 (88%), Positives = 320/341 (93%), Gaps = 2/341 (0%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIAN ALAGLTLAPL++KVDPN+NV+LTACLTVYVGCYRSVKPTPPSETMS+EHA
Sbjct: 1   MKNAERIANFALAGLTLAPLVMKVDPNVNVVLTACLTVYVGCYRSVKPTPPSETMSSEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP+HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGILALSATLLPAIKRYLPDHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I W FPYFRSLEIEFTRSQ++AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DAISWRFPYFRSLEIEFTRSQVVAAIPGTFFCAWYALKKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
           LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
           VIPGIFVALALRFD SRGK  +YFKSAFLGY+VGLVLTIIVMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDASRGKDGQYFKSAFLGYSVGLVLTIIVMNWFQAAQPALLYIVPAVI 300

Query: 301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESG-DAKTSKK 340
           GFLAAH IWNG+VK LLEFDESKT  + S++ G D K SKK
Sbjct: 301 GFLAAHVIWNGDVKPLLEFDESKT-GIASEDGGEDDKGSKK 340

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2056936	344	SPP "signal peptide peptidase"	0.988	0.982	0.741	2.2e-137
UNIPROTKB|Q6ZGL9	343	SPP1 "Signal peptide peptidase	1.0	0.997	0.723	1.3e-132
UNIPROTKB|B9FJ61	343	SPP2 "Signal peptide peptidase	1.0	0.997	0.717	1.5e-131
UNIPROTKB|F1MYW7	377	HM13 "Uncharacterized protein"	0.915	0.830	0.436	1.5e-60
UNIPROTKB|E2RB97	378	HM13 "Uncharacterized protein"	0.915	0.828	0.434	1.9e-60
UNIPROTKB|Q8TCT9	377	HM13 "Minor histocompatibility	0.915	0.830	0.427	6.4e-60
MGI|MGI:95886	378	H13 "histocompatibility 13" [M	0.915	0.828	0.431	6.4e-60
ZFIN|ZDB-GENE-020802-3	366	hm13 "histocompatibility (mino	0.853	0.797	0.454	5.7e-59
UNIPROTKB|F1S7H6	358	HM13 "Uncharacterized protein"	0.915	0.874	0.427	3.2e-58
UNIPROTKB|E2RB96	427	HM13 "Uncharacterized protein"	0.856	0.686	0.434	6.6e-58

TAIR|locus:2056936 SPP "signal peptide peptidase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
 Identities = 253/341 (74%), Positives = 285/341 (83%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MKNCER               V+V+PNLNVILTAC+TVYVGC+RSVK TPP+ETMS EHA
Sbjct:     1 MKNCERFANLALAGLTLAPLVVRVNPNLNVILTACITVYVGCFRSVKDTPPTETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVNAVLT YFFVLGI+ALSAT+LPA++RFLPN WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             +LI+W FPYF+SLE+EFT+SQ++A IPGTFFCAWYA +KHWLANN LGL+FCIQGIEMLS
Sbjct:   121 NLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
             LGSFKTGAILLAGLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D  RP+SMLGLGDI
Sbjct:   181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDI 240

Query:   241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
             VIPGIFVALALRFDVSR +  +YF SAF+GY VG++LTI+VMNWFQAAQPALLYIVPAVI
Sbjct:   241 VIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQPALLYIVPAVI 300

Query:   301 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKV 341
             GFLA+HCIWNG++K LL FDESKT    + ES   KTS++V
Sbjct:   301 GFLASHCIWNGDIKPLLAFDESKTEEATTDES---KTSEEV 338

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009846 "pollen germination" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

UNIPROTKB|Q6ZGL9 SPP1 "Signal peptide peptidase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
 Identities = 248/343 (72%), Positives = 277/343 (80%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MK  ER               VKV+PN+NVILTACL VYVGCYRSVKPTPPSETMS EHA
Sbjct:     1 MKTHERAANLALAGLSLAPLVVKVEPNVNVILTACLAVYVGCYRSVKPTPPSETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVNAVLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             + I+W  P+F SL +EFT+SQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct:   121 NAIVWCAPFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
             LGSFKTGAILLAGLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct:   181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query:   241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
             VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQPALLYIVP VI
Sbjct:   241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query:   301 GFLAAHCIWNGEVKQLLEFDESKTAAVVS-QESGDAKTSKKVE 342
             GF+A HC+WNGEVK LLE++ESK     + +E  D+K +KK E
Sbjct:   301 GFVAVHCLWNGEVKPLLEYNESKAEEEDAVEEDTDSKQNKKEE 343

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|B9FJ61 SPP2 "Signal peptide peptidase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 246/343 (71%), Positives = 274/343 (79%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MK  ER               VKV+PN NVILTACL VYVGCYRSVKPTPP+ETMS EHA
Sbjct:     1 MKTHERAANLALAGLSLAPLVVKVNPNANVILTACLAVYVGCYRSVKPTPPAETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVN VLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             + I+W  P F SL +EFTRSQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct:   121 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDI 240
             LGSFKTGAILL+GLF YDIFWVFFTPVMVSVAKSFDAPIKLLFPT D ARPFSMLGLGDI
Sbjct:   181 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query:   241 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 300
             VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQPALLYIVP VI
Sbjct:   241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query:   301 GFLAAHCIWNGEVKQLLEFDESKTAAVVS-QESGDAKTSKKVE 342
             GF+A HC+WNGEVK LLE++ESK     + +E  D+K +KK E
Sbjct:   301 GFVAVHCLWNGEVKPLLEYNESKAEEEEACEEDTDSKQNKKKE 343

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1MYW7 HM13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 147/337 (43%), Positives = 199/337 (59%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPLMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YDIFWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   218 YDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query:   310 NGEVKQLLEFDES--KTAAVVSQ--ESGDAKTSKKVE 342
              GEV ++  ++ES  K  A V++  E  +A TSK +E
Sbjct:   337 KGEVTEMFSYEESNPKDPAAVTETREGTEATTSKGLE 373

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

UNIPROTKB|E2RB97 HM13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 147/338 (43%), Positives = 199/338 (58%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDAKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query:   310 NGEVKQLLEFDES--KTAAVV---SQESGDAKTSKKVE 342
              GEV ++  ++ES  K AA V   S+E  +A  SK +E
Sbjct:   337 KGEVTEMFSYEESNPKDAAAVTEGSKEGTEASASKGLE 374

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q8TCT9 HM13 "Minor histocompatibility antigen H13" [Homo sapiens (taxid:9606)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 144/337 (42%), Positives = 198/337 (58%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW-NED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P  + N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGD+VIPGIF+AL 
Sbjct:   218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEANNFAMLGLGDVVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query:   310 NGEVKQLLEFDESKT---AAVV-SQESGDAKTSKKVE 342
              GEV ++  ++ES     AAV  S+E  +A  SK +E
Sbjct:   337 KGEVTEMFSYEESNPKDPAAVTESKEGTEASASKGLE 373

GO:0005886 "plasma membrane" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0006509 "membrane protein ectodomain proteolysis" evidence=IMP

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IMP

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IMP

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

MGI|MGI:95886 H13 "histocompatibility 13" [Mus musculus (taxid:10090)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 146/338 (43%), Positives = 199/338 (58%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YDIFWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   218 YDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query:   310 NGEVKQLLEFDES--KTAAVVSQ---ESGDAKTSKKVE 342
              GEV ++  ++ES  K  A  ++   ES +A  SK++E
Sbjct:   337 KGEVAEMFSYEESNPKDPAAETESKEESTEASASKRLE 374

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISO

ZFIN|ZDB-GENE-020802-3 hm13 "histocompatibility (minor) 13" [Danio rerio (taxid:7955)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 139/306 (45%), Positives = 183/306 (59%)

Query:    40 VGCYRSVKPTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGI 99
             VGC +S   +   ET+++  A RFP + S               + VN +L+ YFFVLGI
Sbjct:    58 VGCSKSKGSSDMPETITSRDAARFPIIASCTLFGLYLFFKVFSQEYVNMLLSMYFFVLGI 117

Query:   100 IALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---EFTRSQIIAAIPGTFFCA 153
             +ALS T+ P + R  P N  N+   L+          EI   EF    +I     +    
Sbjct:   118 LALSHTMSPFMCRVFPANLSNKQYQLLFTQGSGESKEEIVNYEFDTKDLICLCISSVVGV 177

Query:   154 WYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAK 213
             WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLFVYD+FWVF T VMV+VAK
Sbjct:   178 WYVLKKHWIANNLFGLAFALNGVELLHLNNVSTGCILLGGLFVYDVFWVFGTNVMVTVAK 237

Query:   214 SFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKS 266
             SF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL LRFDVS  K +R YF +
Sbjct:   238 SFEAPIKLVFP-QDLLEKGLGASNFAMLGLGDIVIPGIFIALLLRFDVSLKKNTRTYFYT 296

Query:   267 AFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAA 326
             +FL Y  GL LTI VM+ F+ AQPALLY+VPA +GF     +  GE+ ++  ++E   + 
Sbjct:   297 SFLAYIFGLGLTIFVMHTFKHAQPALLYLVPACVGFPVLVALVKGELTEMFRYEEETPSK 356

Query:   327 VVSQES 332
               + ES
Sbjct:   357 EETTES 362

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043523 "regulation of neuron apoptotic process" evidence=IMP

UNIPROTKB|F1S7H6 HM13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 144/337 (42%), Positives = 196/337 (58%)

Query:    29 NVILTACLTVYVGCYRSVKPTPPSETMS-NEHAM-----RFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+           EH +     +FPF+ S +            
Sbjct:    19 SLLLMALLPIFFGALRSVRCARGKRRHRLPEHLVTAFQKKFPFLLSCLMIYIYSCYQIFS 78

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    79 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGESKEEIINYE 138

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   139 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 198

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   199 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 257

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct:   258 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 317

Query:   310 NGEVKQLLEFDESKT---AAVVSQESG-DAKTSKKVE 342
              GEV ++  ++ES +    AV   + G +A TSK +E
Sbjct:   318 KGEVTEMFSYEESNSKDPVAVTEPKEGTEASTSKGLE 354

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|E2RB96 HM13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 136/313 (43%), Positives = 185/313 (59%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDAKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALA 250
             YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct:   218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query:   251 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
             LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct:   277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query:   310 NGEVKQLLEFDES 322
              GEV ++  ++ S
Sbjct:   337 KGEVTEMFSYESS 349

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81062	SIP_ARATH	3, ., 4, ., 2, 3, ., -	0.8157	0.9912	0.9854	yes	no
Q8TCT9	HM13_HUMAN	3, ., 4, ., 2, 3, ., -	0.4391	0.9152	0.8302	yes	no
B9FJ61	SIP2_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7900	1.0	0.9970	yes	no
Q6ZGL9	SIP1_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7959	1.0	0.9970	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_IX0436 SubName- Full=Putative uncharacterized protein; (342 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	2e-90
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	2e-57
COG3389	277	COG3389, COG3389, Uncharacterized protein conserve	0.002

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score =  271 bits (696), Expect = 2e-90
 Identities = 125/291 (42%), Positives = 169/291 (58%), Gaps = 21/291 (7%)

Query: 47  KPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVN--AVLTCYFFVLGIIALSA 104
           K    + T+ + HA+ FP   S  LL L+L FK LSK+ +N   VLT YF +LG IAL+ 
Sbjct: 1   KSKEETGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAF 60

Query: 105 TILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYA--SQKHWL 162
            ILP   R L                      FT S+++A +    F  W+    ++HW+
Sbjct: 61  LILPPCIRRLSFMGAYRFPKKKSKLE-LKNGRFTYSELVALLLCIVFAVWWYVLRKEHWI 119

Query: 163 ANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP------VMVSVAKS-F 215
             + LG+A CI  I++L L + K G ILL+GLF YDIFWVF +P      VMV+VA   F
Sbjct: 120 LQDILGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPF 179

Query: 216 DA----PIKLLFP----TRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKS 266
           DA    P+KL+FP          PFSMLGLGDIV+PG+ +A  LRFD+S+ K SR YF S
Sbjct: 180 DAAEKLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKSSRTYFIS 239

Query: 267 AFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLL 317
             + Y +GL++T + +N F+AAQPALLY+VP  +G L    +W GE+K+L 
Sbjct: 240 TMIAYGLGLLITFVALNLFKAAQPALLYLVPCTLGTLLLVALWRGELKKLW 290

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score =  185 bits (473), Expect = 2e-57
 Identities = 91/276 (32%), Positives = 130/276 (47%), Gaps = 45/276 (16%)

Query: 51  PSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAV 110
               +++  A+ FP V + +L+ L+  FK+L       VL  YF  LG++ L + + P  
Sbjct: 1   EYSLLNSLVAIVFPIVATFVLVLLYKFFKYL-----VIVLVIYFSSLGVLFLYSLLYPLE 55

Query: 111 KRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQK-HWLANNTLGL 169
                                        + +I  +       W   +K  W+  + +G+
Sbjct: 56  VFR----------------------VDYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGI 93

Query: 170 AFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP----VMVSVAKSFDAPIKLLFPT 225
           + C+  + +L L S  T  ILL  LF+YDIF VF TP    VMV VA   D PI  +FP 
Sbjct: 94  SLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPGPLRVMVEVATGRDEPI-KVFPA 152

Query: 226 R------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTV 273
                        D    FSMLGLGDIV PGI VA A RFDVS    S YF + F+ Y +
Sbjct: 153 LLYVPRLVVSFEDDEEERFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACFVAYGI 212

Query: 274 GLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 309
           GL+LT++++  F+ AQPAL Y+VP  + F     + 
Sbjct: 213 GLILTLVLLALFKKAQPALPYLVPFTLVFYLLTALL 248

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

>gnl|CDD|225924 COG3389, COG3389, Uncharacterized protein conserved in archaea [Function unknown]

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 46/163 (28%), Positives = 62/163 (38%), Gaps = 22/163 (13%)

Query: 161 WLANNTLG--LAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS---F 215
           W   +  G  LA  I  I  +S G      +LL  L VYD   V+ T  M+S+A+     
Sbjct: 112 WYVIDLAGFFLAVGIAAIFGISFGVLPA-VVLLIALAVYDAISVYKTRHMISLAEGVMDL 170

Query: 216 DAPIKLLFPTRDTA------------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRY 263
           D P+  + P                     M+GLGD V+P I V  A  F +S       
Sbjct: 171 DLPMLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLISPILAFIV 230

Query: 264 FKSAFLGYTVGLVLTIIVMNWFQAAQPALLYI-VPAVIGFLAA 305
              A  G  VGL +   V        P L ++   A+ GFL  
Sbjct: 231 L-PALAGGLVGLAVLYFVNR--GRPHPGLPFLNTGAIAGFLIG 270

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG2443	362	consensus Uncharacterized conserved protein [Funct	100.0
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
KOG2442	541	consensus Uncharacterized conserved protein, conta	100.0
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	100.0
PF06550	283	DUF1119: Protein of unknown function (DUF1119); In	99.83
COG3389	277	Uncharacterized protein conserved in archaea [Func	99.69
PF01080	403	Presenilin: Presenilin Alzheimer disease; InterPro	95.26
KOG2736	406	consensus Presenilin [Signal transduction mechanis	95.23

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9.3e-82  Score=603.64  Aligned_cols=328  Identities=47%  Similarity=0.782  Sum_probs=286.5

Q ss_pred             HHHHHHhhcCCccccCcchhhHHHHHHHHhHhcccccCC------C-CCCCCCCccccch-hhhHHHHHHHHHHHHHHhc
Q 019365           10 LALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKP------T-PPSETMSNEHAMR-FPFVGSAMLLSLFLLFKFL   81 (342)
Q Consensus        10 ~~~~~~~~~~~~~~v~~~~~~i~~Av~~I~iGs~~s~~~------~-~~~e~i~~~~A~~-fPv~aS~~L~~LY~l~k~~   81 (342)
                      .+....+.++.....+.++.++++|+++|++||.||++.      + +..|+++.+||.. ||++|||+|++||+++|.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~~d~~~~~es~t~~~a~~~fPi~~s~tLl~lyl~fk~l   89 (362)
T KOG2443|consen   10 PAAAGTHWTTSELLASAYVSLILIALLLIVIGSFRSLNYIKENEDKKDKSESITKRDAGKMFPIIGSCTLLLLYLLFKPL   89 (362)
T ss_pred             ccccCCcccchhhhcccchHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhcccCCcccchHHHHHHHHHHHH
Confidence            344446677777788889999999999999999999962      1 2467899999998 9999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCCCCcCceeeeeccc---cceeeeeehhhHHhhhhhHHHHHH
Q 019365           82 SKDLVNAVLTCYFFVLGIIALSATILPAVK----RFLPNHWNEDLIIWHFPYF---RSLEIEFTRSQIIAAIPGTFFCAW  154 (342)
Q Consensus        82 ~~~~i~~ll~~yf~~~g~~~l~~~l~~~~~----~~~p~~~~~~~~~~~~p~~---~~~~~~~~~~~l~~~~~~~~~~~~  154 (342)
                      +++++| +++.||++.|+.++.+.+.|++.    .++|..+.+- ...+-|..   ...+.+||..++++...|..+++|
T Consensus        90 s~~~~~-ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~-~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~~i~v~  167 (362)
T KOG2443|consen   90 SKELIN-LLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHL-LFPRGPGEKKEFICNGKFTRAQIVALVLSSMIVVW  167 (362)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhhe-eeeccCCcccceeecccccHHHHHHHHHHHHHHHH
Confidence            999998 67899999999999999999988    3455444321 00011111   124789999999999999999999


Q ss_pred             hhccchhhHhhHHHHHHHHHhhhhcccCchhhHHHHHHHHHHhhhheeeccchhhhhhccCCCCEEEEeeccCC-----C
Q 019365          155 YASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDT-----A  229 (342)
Q Consensus       155 ~~~~~~W~l~nilgi~~~~~~i~~i~l~s~k~~~iLL~~lf~YDif~VF~T~vMvtVA~~~~~Pikl~~P~~~~-----~  229 (342)
                      |+.++||++||++|+++|+++|+.+|++|+|+|++||.|||+|||||||+|+|||||||++|.|+|+++|++..     .
T Consensus       168 ~ll~~HWl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVFgTnVMVtVAt~~D~PikL~fP~~l~~~~~~a  247 (362)
T KOG2443|consen  168 YLLTKHWLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFGTNVMVTVATSLDAPIKLVFPQKLLFPGLTA  247 (362)
T ss_pred             HHhhhHHHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEecCceEEEeecccCCceEEecchhhccCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999622     4


Q ss_pred             CCceeccCCCccchhHHhhhHhhhcccCCCC---cchHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhhhHHHHHHHHH
Q 019365          230 RPFSMLGLGDIVIPGIFVALALRFDVSRGKG---SRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAH  306 (342)
Q Consensus       230 ~~~s~LGlGDIviPGi~ia~~lRfD~~~~~~---~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLvP~~l~~~~~~  306 (342)
                      .+||||||||||+||+|+|+++|||.+++..   +.||+.+++||.+|+..|+++|+++|++||||||+||+|+++.+++
T Consensus       248 s~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~t~i~Y~~gL~~ti~~~~~FkaAQPALLYlVP~~l~~~ll~  327 (362)
T KOG2443|consen  248 SNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHNTFIAYFLGLLTTIVVLHIFKAAQPALLYLVPACLGPLLLM  327 (362)
T ss_pred             ccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEEeHHHHHhhhHHHhhhhhhhhccchhhhhhhHHHHhHHHHH
Confidence            4699999999999999999999999886543   7899999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHhhcccccccccccccccccccccc
Q 019365          307 CIWNGEVKQLLEFDESKTAAVVSQESGDAKTSK  339 (342)
Q Consensus       307 A~~rgEl~~lw~~~~~~~~~~~~~~~~~~~~~~  339 (342)
                      |++|||++++|+|+++.+||++++.|.|+++|+
T Consensus       328 A~~~gdlk~l~s~~~~~~~~~~~~~e~k~~~e~  360 (362)
T KOG2443|consen  328 AYWRGDLKVLWSFDESTKEESAEQDEVKEKKEN  360 (362)
T ss_pred             HHHccchHhhhCccccCCCCcHHHHhhhhcccc
Confidence            999999999999999887777656666655554

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.1e-68  Score=515.83  Aligned_cols=270  Identities=46%  Similarity=0.831  Sum_probs=0.0

Q ss_pred             CCCCCCCCccccchhhhHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCC----CCCcCc
Q 019365           49 TPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNA--VLTCYFFVLGIIALSATILPAVKRFLPN----HWNEDL  122 (342)
Q Consensus        49 ~~~~e~i~~~~A~~fPv~aS~~L~~LY~l~k~~~~~~i~~--ll~~yf~~~g~~~l~~~l~~~~~~~~p~----~~~~~~  122 (342)
                      +++.|++|.+||+.||++||++|+++|+++|+++++++|.  +++.||++.|+.++..++.+.+.+..+.    ....++
T Consensus         2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~~~~~~~~~~   81 (298)
T PF04258_consen    2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLTYIFPFFPCRSFPWKK   81 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccce
Confidence            3578899999999999999999999999999999999986  8999999999999988888877764331    111111


Q ss_pred             eeeeeccc--cceeeeeehhhHHhhhhhHHHHH-Hhhccc-hhhHhhHHHHHHHHHhhhhcccCchhhHHHHHHHHHHhh
Q 019365          123 IIWHFPYF--RSLEIEFTRSQIIAAIPGTFFCA-WYASQK-HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYD  198 (342)
Q Consensus       123 ~~~~~p~~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~-~W~l~nilgi~~~~~~i~~i~l~s~k~~~iLL~~lf~YD  198 (342)
                      .+...+..  +..+.+++..++++..+|+.+++ |++.++ ||++||++|+|+|+++++.+|++|+|+++++|+++|+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YD  161 (298)
T PF04258_consen   82 WKLSFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNEHWILQNILGICFCINIISLIRLPSFKTATILLIGLFLYD  161 (298)
T ss_dssp             ---------------------------------S----------------------------------------------
T ss_pred             EEEEEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHHHH
Confidence            11111111  23557788889999999888865 566677 999999999999999999999999999999999999999


Q ss_pred             hheee------ccchhhhhhcc-CCC----CEEEEeecc-----CCCCCceeccCCCccchhHHhhhHhhhcccC-CCCc
Q 019365          199 IFWVF------FTPVMVSVAKS-FDA----PIKLLFPTR-----DTARPFSMLGLGDIVIPGIFVALALRFDVSR-GKGS  261 (342)
Q Consensus       199 if~VF------~T~vMvtVA~~-~~~----Pikl~~P~~-----~~~~~~s~LGlGDIviPGi~ia~~lRfD~~~-~~~~  261 (342)
                      |||||      +++||++|||+ .|.    |+|+++|+.     ++++++||||+||||+||+++++|+|||.++ +.++
T Consensus       162 if~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~  241 (298)
T PF04258_consen  162 IFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRNKSRK  241 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhccccc
Confidence            99999      88899999999 888    999999997     4678999999999999999999999999988 3467


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHHHhhhHHHhhc
Q 019365          262 RYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLE  318 (342)
Q Consensus       262 ~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLvP~~l~~~~~~A~~rgEl~~lw~  318 (342)
                      +||.++++||++||++|+++++++|+|||||||+||+|+++++++|++|||++++||
T Consensus       242 ~Yf~~~~~~Y~~Gl~~t~~~~~~~~~~QPALlylvP~~l~~~~~~a~~r~el~~~w~  298 (298)
T PF04258_consen  242 PYFIASLIGYALGLLLTFVALHLFKHGQPALLYLVPCTLGSVLLVAWIRGELKDFWN  298 (298)
T ss_dssp             ---------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCCCeehHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence            899999999999999999999999999999999999999999999999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=100.00  E-value=4.9e-65  Score=504.86  Aligned_cols=299  Identities=31%  Similarity=0.503  Sum_probs=249.3

Q ss_pred             HHhhcCCccccCcchhhH-HHHHHHHhHhcccccCCCCC--------------CC------------CCCccccchhhhH
Q 019365           14 GLTLAPLLVKVDPNLNVI-LTACLTVYVGCYRSVKPTPP--------------SE------------TMSNEHAMRFPFV   66 (342)
Q Consensus        14 ~~~~~~~~~~v~~~~~~i-~~Av~~I~iGs~~s~~~~~~--------------~e------------~i~~~~A~~fPv~   66 (342)
                      ++.|+|.+|.+|+++++| +||++||..|||||..++++              .|            .+|.-.|..|.+.
T Consensus       173 ~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~  252 (541)
T KOG2442|consen  173 LALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVT  252 (541)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhh
Confidence            467999999999999999 99999999999999732110              11            1344456667778


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcCceeeeeccccceeeeeehhhHHhhh
Q 019365           67 GSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAI  146 (342)
Q Consensus        67 aS~~L~~LY~l~k~~~~~~i~~ll~~yf~~~g~~~l~~~l~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~  146 (342)
                      ++.+|+.+|+++++    +++. ++++|++.|..++++|+.+.++|..-+..+   .+-.-|..+..+    ...++..+
T Consensus       253 ~c~~LvLlyfF~~~----~V~v-~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~---~~~~~~~l~~~~----~~~l~l~~  320 (541)
T KOG2442|consen  253 ACGFLVLLYFFYSY----LVYV-LIIIFCIGGAQGLYNCLAALVHRLPYGAAR---FPTLAPRLGNMS----YRLLFLSI  320 (541)
T ss_pred             hHHHHHHHHHHHHH----HHHH-HhhheeecccchHHHHHHHHHhhhhhhccc---ccccccccCChh----HHHHHHHH
Confidence            88888888887765    3554 568899999999999999999885433321   111112222222    23455556


Q ss_pred             hhHHHH-HHhhccc---hhhHhhHHHHHHHHHhhhhcccCchhhHHHHHHHHHHhhhheeeccc--------hhhhhhcc
Q 019365          147 PGTFFC-AWYASQK---HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKS  214 (342)
Q Consensus       147 ~~~~~~-~~~~~~~---~W~l~nilgi~~~~~~i~~i~l~s~k~~~iLL~~lf~YDif~VF~T~--------vMvtVA~~  214 (342)
                      ++++++ .|.++|+   .|++||++|||+|++.+|.+|+||+|++++||..+|+|||||||+||        ||++||+|
T Consensus       321 ~Cia~aV~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G  400 (541)
T KOG2442|consen  321 LCIAVAVVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARG  400 (541)
T ss_pred             hhhheeEEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecC
Confidence            666664 5777776   69999999999999999999999999999999999999999999997        78999998


Q ss_pred             C-----CCCEEEEeecc------CCCCCceeccCCCccchhHHhhhHhhhcccCCC-CcchHHHHHHHHHHHHHHHHHHH
Q 019365          215 F-----DAPIKLLFPTR------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGK-GSRYFKSAFLGYTVGLVLTIIVM  282 (342)
Q Consensus       215 ~-----~~Pikl~~P~~------~~~~~~s~LGlGDIviPGi~ia~~lRfD~~~~~-~~~YF~~s~igY~~GL~~t~~~~  282 (342)
                      .     ..||.+++||.      ++.++|||||+|||++||+++|+|+|||...++ +..||.++++||.+||++|++++
T Consensus       401 ~~s~~EkiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYfv~~tvaYgiGLlvTfvaL  480 (541)
T KOG2442|consen  401 PSSTEEKIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYFVWSTVAYGIGLLVTFVAL  480 (541)
T ss_pred             CCCCCCCcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEEehhHHHHHHHHHHHHHHH
Confidence            4     58999999993      678999999999999999999999999998776 88999999999999999999999


Q ss_pred             HHhCCCccchhhhhhHHHHHHHHHHHHhhhHHHhhccccccc
Q 019365          283 NWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKT  324 (342)
Q Consensus       283 ~~~~~~QPALLYLvP~~l~~~~~~A~~rgEl~~lw~~~~~~~  324 (342)
                      ..+|.|||||||||||+|++....|++|||++++|++...+.
T Consensus       481 ~LM~~GQPALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~  522 (541)
T KOG2442|consen  481 VLMKGGQPALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQK  522 (541)
T ss_pred             HHhcCCCceEEEEechHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999999999988664

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=100.00  E-value=2.9e-50  Score=379.32  Aligned_cols=231  Identities=38%  Similarity=0.631  Sum_probs=201.8

Q ss_pred             CCCCCccccchhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcCceeeeecccc
Q 019365           52 SETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFR  131 (342)
Q Consensus        52 ~e~i~~~~A~~fPv~aS~~L~~LY~l~k~~~~~~i~~ll~~yf~~~g~~~l~~~l~~~~~~~~p~~~~~~~~~~~~p~~~  131 (342)
                      .|.+++++++.||+++|++|+++|...|+     .+..+.+||+..|+.++..++.+......                 
T Consensus         2 ~~~~n~~~~i~fii~~s~~Ll~Ly~~~~~-----~~i~~~~~f~~~~~~~~~~~~~~~~~~~~-----------------   59 (249)
T smart00730        2 YSLLNSLVAIVFPIVATFVLVLLYKFFKY-----LVIVLVIYFSSLGVLFLYSLLYPLEVFRV-----------------   59 (249)
T ss_pred             cccccHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence            46789999999999999999999988876     26677899999999999999888765420                 


Q ss_pred             ceeeeeehhhHHhhhhhH-HHHHHhhccc-hhhHhhHHHHHHHHHhhhhcccCchhhHHHHHHHHHHhhhheeecc----
Q 019365          132 SLEIEFTRSQIIAAIPGT-FFCAWYASQK-HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFT----  205 (342)
Q Consensus       132 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~W~l~nilgi~~~~~~i~~i~l~s~k~~~iLL~~lf~YDif~VF~T----  205 (342)
                            +....+....+. +.+.|+.++| +|+.||++|+++|+++++.+++||+|++.++|+++++||+||||+|    
T Consensus        60 ------~~~~~~~~~~~~~v~~~~~~~~~~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~~~  133 (249)
T smart00730       60 ------DYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPGPL  133 (249)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCCCc
Confidence                  011223333333 3467887786 9999999999999999999999999999999999999999999999    


Q ss_pred             chhhhhhccCC-----CCEEEEeec------cCCCCCceeccCCCccchhHHhhhHhhhcccCCCCcchHHHHHHHHHHH
Q 019365          206 PVMVSVAKSFD-----APIKLLFPT------RDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVG  274 (342)
Q Consensus       206 ~vMvtVA~~~~-----~Pikl~~P~------~~~~~~~s~LGlGDIviPGi~ia~~lRfD~~~~~~~~YF~~s~igY~~G  274 (342)
                      +||++|||+.|     .|+++..||      +++++++++||+||||+||+++++|+|||.+++.++.||..|++||++|
T Consensus       134 ~vMv~vA~~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~~~~yf~~~~~ay~~G  213 (249)
T smart00730      134 RVMVEVATGRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACFVAYGIG  213 (249)
T ss_pred             hHHhhHhccCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccCCcccHHHHHHHHHHH
Confidence            89999999976     467778887      3456789999999999999999999999988777889999999999999


Q ss_pred             HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHHHh
Q 019365          275 LVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWN  310 (342)
Q Consensus       275 L~~t~~~~~~~~~~QPALLYLvP~~l~~~~~~A~~r  310 (342)
                      |+.|+++++.+|+|||||+|+||+++++.+++|+.|
T Consensus       214 L~~t~~~l~~~~~aqPALlylvp~~l~~~~~~~~~r  249 (249)
T smart00730      214 LILTLVLLALFKKAQPALPYLVPFTLVFYLLTALLR  249 (249)
T ss_pred             HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999876

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function

Probab=99.83  E-value=6.4e-19  Score=167.27  Aligned_cols=169  Identities=28%  Similarity=0.348  Sum_probs=137.5

Q ss_pred             hHHhhhhhHHHHHHhhccchhhHhhHHHHHHHH--HhhhhcccCchhhHHHHHHHHHHhhhheeeccchhhhhhcc---C
Q 019365          141 QIIAAIPGTFFCAWYASQKHWLANNTLGLAFCI--QGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS---F  215 (342)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~W~l~nilgi~~~~--~~i~~i~l~s~k~~~iLL~~lf~YDif~VF~T~vMvtVA~~---~  215 (342)
                      ...+.+.+..+..+++.+++|+..|+.|+.++.  .++..++++-+. +.+||+.|-+||..-||+|+||++.|++   .
T Consensus        92 ~~~a~~~ai~~~~~L~~ypEWYviD~~Gil~~aG~aaiFGISl~~lp-aiiLL~iLAVYDaISVYkTkHMltLAegv~d~  170 (283)
T PF06550_consen   92 NIIALILAIALTALLYKYPEWYVIDIAGILMGAGAAAIFGISLGILP-AIILLAILAVYDAISVYKTKHMLTLAEGVMDL  170 (283)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHHHHHHhhhccHHH-HHHHHHHHHHhhhhheecchHHHHHHHHHhcc
Confidence            345666777778888889999999999999985  578999998876 9999999999999999999999999998   4


Q ss_pred             CCCEEEEeecc---------------CCCCCceeccCCCccchhHHhhhHhhhcccCCCC-cchH-HHHHHHHHHHHHHH
Q 019365          216 DAPIKLLFPTR---------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGKG-SRYF-KSAFLGYTVGLVLT  278 (342)
Q Consensus       216 ~~Pikl~~P~~---------------~~~~~~s~LGlGDIviPGi~ia~~lRfD~~~~~~-~~YF-~~s~igY~~GL~~t  278 (342)
                      +.|+.+++|+.               +++|+..++|+||.++|.++++.+..|....... -.++ ..+++|-.+|+.+-
T Consensus       171 klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~~~~~~~~lpalga~~Gtl~gl~vL  250 (283)
T PF06550_consen  171 KLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSAPILGGLNLPALGAMLGTLAGLAVL  250 (283)
T ss_pred             CCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence            79999999983               1124556899999999999999999997653321 1222 45777777777665


Q ss_pred             HHHHHHhCCCccchhhhhhHHHHHHHHHHHHhh
Q 019365          279 IIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNG  311 (342)
Q Consensus       279 ~~~~~~~~~~QPALLYLvP~~l~~~~~~A~~rg  311 (342)
                      ... ...+++||+|.||.-+.+++.++.++..|
T Consensus       251 ~~~-v~kgrp~aGLP~LN~GaI~Gflig~l~sg  282 (283)
T PF06550_consen  251 LRF-VMKGRPQAGLPFLNGGAIAGFLIGALASG  282 (283)
T ss_pred             HHH-HHcCCCCCCCCccchhHHHHHHHHHHHcC
Confidence            543 24689999999999999999998887655

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.69  E-value=8.4e-17  Score=148.66  Aligned_cols=159  Identities=26%  Similarity=0.355  Sum_probs=130.9

Q ss_pred             hhhhhHHHHHHhhccchhhHhhHHHHHHH--HHhhhhcccCchhhHHHHHHHHHHhhhheeeccchhhhhhcc---CCCC
Q 019365          144 AAIPGTFFCAWYASQKHWLANNTLGLAFC--IQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS---FDAP  218 (342)
Q Consensus       144 ~~~~~~~~~~~~~~~~~W~l~nilgi~~~--~~~i~~i~l~s~k~~~iLL~~lf~YDif~VF~T~vMvtVA~~---~~~P  218 (342)
                      +..+++.+....+.++.|+..|..|.+++  +.++..++++-.. +..+|..+-+||..-||+|.+|++.|++   .|+|
T Consensus        95 si~~aI~~~~lL~~~peWyVid~ag~~la~Giaai~GIsfgv~p-avvlL~~lavYDaIsVYkT~HMIslA~~v~d~~lP  173 (277)
T COG3389          95 SIGLAIGLVYLLYKYPEWYVIDLAGFFLAVGIAAIFGISFGVLP-AVVLLIALAVYDAISVYKTRHMISLAEGVMDLDLP  173 (277)
T ss_pred             HHHHHHHHHHhhhhccceEEeehHHHHHHhhHHHhheeecchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence            34445555555567889999999999988  5778899998876 8899999999999999999999999998   5999


Q ss_pred             EEEEeecc------------CCCCCceeccCCCccchhHHhhhHhhhcccCCCCcchH--HHHHHHHHHHHHHHHHHHHH
Q 019365          219 IKLLFPTR------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYF--KSAFLGYTVGLVLTIIVMNW  284 (342)
Q Consensus       219 ikl~~P~~------------~~~~~~s~LGlGDIviPGi~ia~~lRfD~~~~~~~~YF--~~s~igY~~GL~~t~~~~~~  284 (342)
                      |.+++|.+            ..+++.-|.|+||+++|.+++..+.-|-.+.   ..+|  ..++.|-.+|+.+-.++  .
T Consensus       174 mlfviP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~s~---~l~f~~Lpal~GglvGl~vL~~v--~  248 (277)
T COG3389         174 MLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLISP---ILAFIVLPALAGGLVGLAVLYFV--N  248 (277)
T ss_pred             eEEEeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhccCC---chhhhhHHHHhccHHHHHHHHHH--h
Confidence            99999962            3466778999999999999999998886543   3455  33799999999776443  5


Q ss_pred             hCCCccchhhhhhHHHHHHHHHHH
Q 019365          285 FQAAQPALLYIVPAVIGFLAAHCI  308 (342)
Q Consensus       285 ~~~~QPALLYLvP~~l~~~~~~A~  308 (342)
                      .+++||.|.|+.-+.+.+.++.+.
T Consensus       249 r~Rp~pGLP~lN~GaIaGflig~V  272 (277)
T COG3389         249 RGRPHPGLPFLNTGAIAGFLIGFV  272 (277)
T ss_pred             cCCCCCCCceeccchHHHHHHHHH
Confidence            689999999999999888777654

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.26  E-value=0.037  Score=56.26  Aligned_cols=66  Identities=29%  Similarity=0.534  Sum_probs=48.6

Q ss_pred             eeccCCCccchhHHhhhHhhh-cccCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhhhHHHHHHHHH
Q 019365          233 SMLGLGDIVIPGIFVALALRF-DVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAH  306 (342)
Q Consensus       233 s~LGlGDIviPGi~ia~~lRf-D~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLvP~~l~~~~~~  306 (342)
                      --|||||-|+=+++++-+.++ |.      .-..+|++|-.+||.+|...+.+++++-|||.  ++..+|.+.-.
T Consensus       326 ~klGlGDFiFYs~Lvg~aa~~~~~------~~~~~~~~ail~Gl~~Tl~~l~~~~~alPALP--isi~~g~~~yf  392 (403)
T PF01080_consen  326 IKLGLGDFIFYSVLVGRAAMYGDW------NTVVACFVAILIGLCLTLLLLAIFRKALPALP--ISIALGLIFYF  392 (403)
T ss_dssp             -SS-TTTHHHHHHHHHHHHHH-TT------TTHHHHHHHHHHHHHHHHHHHHHHT-S-SSSS--S----HHHHHH
T ss_pred             eeecchhHHHHHHHHhHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHH
Confidence            358999999999999988875 43      33578999999999999999999999999998  66666655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.

>KOG2736 consensus Presenilin [Signal transduction mechanisms]

Probab=95.23  E-value=0.018  Score=57.67  Aligned_cols=68  Identities=26%  Similarity=0.455  Sum_probs=54.7

Q ss_pred             ceeccCCCccchhHHhhhHhhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhhhHHHHHHHHH
Q 019365          232 FSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAH  306 (342)
Q Consensus       232 ~s~LGlGDIviPGi~ia~~lRfD~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLvP~~l~~~~~~  306 (342)
                      ---||+||-++=.++++=+.-+|-+     .=-++|.+|-.+||.+|.....++|++-|||.  .|.++|.+.-.
T Consensus       319 ~ikLGlGDFIFYSvLvGkAa~~~d~-----~TviAC~vaIL~GL~~TL~llsv~~kALPALP--isI~~G~iFYF  386 (406)
T KOG2736|consen  319 GIKLGLGDFIFYSVLVGKAAAYGDL-----NTVIACFVAILIGLCLTLLLLSVFKKALPALP--ISITFGLIFYF  386 (406)
T ss_pred             ceeeccCceEEEEeeccchhhcCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCc--hHHHHHHHHHH
Confidence            3469999999988887776666521     12278999999999999999999999999999  78887777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
4hyg_A	301	Putative uncharacterized protein; protease, membra	99.97
2kr6_A	176	Presenilin-1; protease, alternative splicing, alzh	96.67

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A

Probab=99.97  E-value=3.2e-31  Score=250.23  Aligned_cols=171  Identities=24%  Similarity=0.302  Sum_probs=130.2

Q ss_pred             hHHhhhhhHHHHHHhhccchhhHhhHHHHHHHHH--hhhhcccCchhhHHHHHHHHHHhhhheeeccchhhhhhcc---C
Q 019365          141 QIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQ--GIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKS---F  215 (342)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~W~l~nilgi~~~~~--~i~~i~l~s~k~~~iLL~~lf~YDif~VF~T~vMvtVA~~---~  215 (342)
                      ..++.+.+.+++.+++.+++|+.+|+.|+++|..  ++..++++.+ .+.+||++|++||++|||+|+||+++|++   .
T Consensus       104 ~~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAegvmdl  182 (301)
T 4hyg_A          104 AAGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEGVLET  182 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHhhhcc
Confidence            3456667888888889999999999999999975  5677788998 69999999999999999999999999999   6


Q ss_pred             CCCEEEEeecc--------------CCCCCceeccCCCccchhHHhhhHhhhcccCCC----CcchHHHHHHHHHHHHHH
Q 019365          216 DAPIKLLFPTR--------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGK----GSRYFKSAFLGYTVGLVL  277 (342)
Q Consensus       216 ~~Pikl~~P~~--------------~~~~~~s~LGlGDIviPGi~ia~~lRfD~~~~~----~~~YF~~s~igY~~GL~~  277 (342)
                      |.|+++++|+.              +.+|+..++|+||+|+|+++++.+.|||.++..    +-+ +..+++|+.+|+.+
T Consensus       183 k~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~Gt~~Gl~v  261 (301)
T 4hyg_A          183 KAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVGSLVGLAV  261 (301)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHHHHHHHHH
Confidence            89999999983              235788899999999999999999999975431    123 78999999999999


Q ss_pred             HHHHHHHhCCCccchhhhhhHHHHHHHHHHHHhhhHH
Q 019365          278 TIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVK  314 (342)
Q Consensus       278 t~~~~~~~~~~QPALLYLvP~~l~~~~~~A~~rgEl~  314 (342)
                      ++.... ++++||+|+||+++++++.++.|+.+||++
T Consensus       262 Ll~~V~-~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          262 LLYFVN-KGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             HHHHHT-SSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHH-cCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence            976332 799999999999999999999999999986

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=96.67  E-value=0.0016  Score=57.42  Aligned_cols=66  Identities=29%  Similarity=0.459  Sum_probs=54.3

Q ss_pred             eeccCCCccchhHHhhhHh--h-hcccCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhhhHHHHHHHHH
Q 019365          233 SMLGLGDIVIPGIFVALAL--R-FDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAH  306 (342)
Q Consensus       233 s~LGlGDIviPGi~ia~~l--R-fD~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLvP~~l~~~~~~  306 (342)
                      --|||||-|+=+++++-+.  + .|.      .=..+|++|..+||.+|...+.+++++-|||.  +|..+|.+...
T Consensus        88 ikLGLGDFIFYSvLVgkAa~~~~~d~------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALP--iSI~lG~~fyf  156 (176)
T 2kr6_A           88 VKLGLGDFIFYSVLVGKASATASGDW------NTTIACFVAILIGLCLTLLLLAIFKKALPALP--ISITFGLVFYF  156 (176)
T ss_dssp             CSSCTTTHHHHHHHHHHHHHHSCCTT------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSS--SCCCCHHHHHH
T ss_pred             ccccccCeeehHHHHHHHHHhhccCH------HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc--HHHHHHHHHHH
Confidence            4599999999999999886  4 343      34578999999999999999999999999998  66666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00