Citrus Sinensis ID: 019373

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MRNQSEGGNVNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK
Secondary Structure (PSIPRED)
cccccccccEEEcccccEEEEEEEEEccHHHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccEEEEEEccccccHHHHHHcccccccccccccccEEcccccccccccccccccHHHHHccEEEEEEEEEcccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEccccEEccEEEEEEEEEccccccccEEEEEEEccccEEEEcccccccccEEEEEEccccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEEHccccHHHHHHHEHcccccccccccEEEccccccccccccccEEEccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEcccccEEEEEcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEEccccEEEEcccccccccEEEEEEcccEEEHEHHHHHHHccccccc
Coil and Loop (DISEMBL)
mrnqseggnvnlqscggQLIDVAFYKMTSNDIFEKLIMvsdmkpssfglglitksmsfpthppthsqfvqsggwlkspnlfyslkseanpvpvTSILLKMQSFRGSIRLIQRHaltssntcsipngvvstksvghSFHSLNNYLSRSLHLLATRSqvkygyqteswgssnyyirtsgpglfppammephfanrcistsessvesasyppaaassdlaprikfkrLDKTARHIMQILDKEAVEnvksqreipdikpgyiVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGvgveslfplyspnileikvldkkKVRRAKLYYLRDklnplrnk
Flexible Loop (DISEMBL)
mrnqseggnvnlqscgGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHAltssntcsiPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASyppaaassdlapriKFKRLDKTARHIMQILDkeavenvksqreipdikpgyivqlkvvipenkrrvstlkgiviarrnagisttfrLRRLVAGVGveslfplyspnileikvldkkkvrraklyylrdklnplrnk
Low Complexity Region (SEG)
MRNQSEGGNVNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCIstsessvesasyppaaassDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK
Disordered region (IsUnstruct)
***********LQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSM**********QFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPA*************************************FKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD********
Disordered Region (DISOPRED)
************QSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQ**ALT******************************************************************************************************************HIMQILDKEAVE*VK*QREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLN*****
Disordered Region (DISEMBL)
*********VNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCI*****************SSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK
Disordered Region (DISPRO)
**********NLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFA*************************APRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNQSEGGNVNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
P82413	233	50S ribosomal protein L19	N/A	no	0.307	0.450	0.628	9e-32
Q8W463	225	50S ribosomal protein L19	no	no	0.479	0.728	0.430	2e-28
Q8RXX5	229	50S ribosomal protein L19	no	no	0.307	0.458	0.590	8e-28
Q2VZV5	148	50S ribosomal protein L19	yes	no	0.307	0.709	0.452	2e-20
A5G0G7	124	50S ribosomal protein L19	yes	no	0.307	0.846	0.433	2e-19
Q2RV56	163	50S ribosomal protein L19	yes	no	0.307	0.644	0.443	2e-19
B6IP95	132	50S ribosomal protein L19	yes	no	0.307	0.795	0.443	1e-18
A9HS58	126	50S ribosomal protein L19	yes	no	0.307	0.833	0.424	2e-18
A5V9Q3	129	50S ribosomal protein L19	yes	no	0.307	0.813	0.433	2e-18
B9K8P7	117	50S ribosomal protein L19	yes	no	0.312	0.914	0.456	2e-18

>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2

 Score =  137 bits (346), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 86/105 (81%)

Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
           IM IL+K+AV   +  R +P I+ G IVQ+++ +PENKRR+S  KGIVI+R+NAGI TT 
Sbjct: 122 IMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTI 181

Query: 292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 336
           R+RR++AGVGVE +FPLYSPNI EIKV+  +KVR+A+LYYLRDKL
Sbjct: 182 RIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKL 226

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.
Spinacia oleracea (taxid: 3562)

>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 113/179 (63%), Gaps = 15/179 (8%)

Query: 158 KYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSDLA 217
           K+G+  ++   + + +R         A  E   A   I+ +E +VE        A     
Sbjct: 55  KFGFSLDTRVRNEFIVRAEEGNT--EAESEEFVAE--IADTEGNVEEV----VEAKPTRK 106

Query: 218 PRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKG 277
           PRIK          +M IL+++A+E  +  R +P+I+ G IV++K+ +PENKRR+S  KG
Sbjct: 107 PRIKLG-------DVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKG 159

Query: 278 IVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 336
           IV++R+NAGI TT R+RR++AG+GVE +FP+YSPNI EIKV+  +KVRRA+LYYLRDKL
Sbjct: 160 IVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 218

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 88/105 (83%)

Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
           IM +L+K+A+E  ++ R +P ++ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT 
Sbjct: 118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177

Query: 292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 336
           R+RR++AG+GVE +FP+YSPNI EIKV+  +KVRRA+LYYLRDKL
Sbjct: 178 RIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 222

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2VZV5|RL19_MAGSA 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
           +I++ L+KE +E + + R +P   PG  +++ V VI  N+ RV   +G+ IAR+N G+++
Sbjct: 3   NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNS 62

Query: 290 TFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
           +F +R++  G GVE +FPLYSPNI  I+V+ +  VRRAKLYYLRD+
Sbjct: 63  SFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRDR 108

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|A5G0G7|RL19_ACICJ 50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) GN=rplS PE=3 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 1/106 (0%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
           +++Q +D E +  +   R +PD KPG  +++ V + E +R R+   +G+ IAR N GI++
Sbjct: 2   NVIQTIDAEQIGKLAEARAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINS 61

Query: 290 TFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            F +R++  G GVE +FPLYSPN+ EI V  +  VRRAKLYYLR +
Sbjct: 62  NFTVRKISYGEGVERVFPLYSPNVTEIAVTRRGVVRRAKLYYLRGR 107

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Acidiphilium cryptum (strain JF-5) (taxid: 349163)

>sp|Q2RV56|RL19_RHORT 50S ribosomal protein L19 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplS PE=3 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
           +I++  +KE +E +  QR +P   PG  +++ V VI  N++RV   +G+ IARRNA +++
Sbjct: 2   NIIEQFEKEQIEKLLEQRGVPQFSPGDTLRVHVKVIEGNRQRVQVYEGVCIARRNAALNS 61

Query: 290 TFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
           +F +R++  G GVE +FPLY+P I  I+V+ + KVRRAKLYYLR +
Sbjct: 62  SFTVRKISFGEGVERIFPLYAPTIDRIEVVRRGKVRRAKLYYLRGR 107

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

>sp|B6IP95|RL19_RHOCS 50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplS PE=3 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
           +I+Q L++E V  + + + IP   PG  V++ V + E  R RV   +G+VIAR+NAG+++
Sbjct: 2   NILQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNS 61

Query: 290 TFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
           +F +R++  G GVE +FPLYSP I  ++++ K  VRRAKLYYLR +
Sbjct: 62  SFTVRKISYGEGVERVFPLYSPRIDSVELVRKGDVRRAKLYYLRGR 107

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|A9HS58|RL19_GLUDA 50S ribosomal protein L19 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplS PE=3 SV=1

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
           +I+Q  + + +  + + RE+P+  PG  V++ V + E +R R+   +G+VIAR N G+++
Sbjct: 2   NIIQQYEADEIARLSAAREVPEFGPGDTVRVSVRVVEGERKRIQAYEGVVIARSNKGLNS 61

Query: 290 TFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            F +R++  G GVE +FPLY+P I EIKV+ +  VRRAKLYYLR +
Sbjct: 62  NFTVRKISNGEGVERVFPLYAPTIAEIKVVRRGAVRRAKLYYLRGR 107

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) (taxid: 272568)

>sp|A5V9Q3|RL19_SPHWW 50S ribosomal protein L19 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplS PE=3 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
           +++Q L+ E +   K  + IPD +PG  +++ V + E +R RV   +G+ IAR N G+ +
Sbjct: 2   NLIQQLEAEQIAKFKESKSIPDFRPGDTLRVGVKVVEGERTRVQAYEGVCIARANKGMGS 61

Query: 290 TFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
           +F +R++  G GVE +FPLYSPN+  I+V+ K  VRRAKLYYLR +
Sbjct: 62  SFTVRKISFGEGVERVFPLYSPNVESIEVVRKGVVRRAKLYYLRGR 107

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) (taxid: 392499)

>sp|B9K8P7|RL19_THENN 50S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplS PE=3 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 79/114 (69%), Gaps = 7/114 (6%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
           H+++I++K+       ++EIPD +PG  V++ V VI  ++ R    +GIVIA+R +GI+ 
Sbjct: 5   HLVRIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINR 59

Query: 290 TFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 342
           TF +RR+ + GVGVE +FP +SP + +I+V+ K KVRRAKLYYLRD    +R K
Sbjct: 60  TFTVRRIGSHGVGVERIFPFHSPVVEKIEVVRKGKVRRAKLYYLRDVKGKIRIK 113

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) (taxid: 309803)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
225456876	243	PREDICTED: uncharacterized protein LOC10	0.695	0.979	0.611	9e-71
297733693	270	unnamed protein product [Vitis vinifera]	0.710	0.9	0.606	1e-70
255557847	248	50S ribosomal protein L19, putative [Ric	0.698	0.963	0.575	8e-66
356569639	236	PREDICTED: 50S ribosomal protein L19, ch	0.526	0.762	0.696	3e-61
397787590	260	putative 50S ribosomal protein L19 [Bras	0.640	0.842	0.529	2e-60
449499757	189	PREDICTED: 50S ribosomal protein L19, ch	0.546	0.989	0.654	2e-60
356523817	231	PREDICTED: 50S ribosomal protein L19, ch	0.526	0.779	0.690	3e-60
449443361	269	PREDICTED: 50S ribosomal protein L19, ch	0.716	0.910	0.524	3e-60
255540489	190	50S ribosomal protein L19, putative [Ric	0.523	0.942	0.636	2e-58
15234249	225	ribosomal protein L19 [Arabidopsis thali	0.640	0.973	0.542	2e-57

>gi|225456876|ref|XP_002277262.1| PREDICTED: uncharacterized protein LOC100255272 [Vitis vinifera]

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 151/247 (61%), Positives = 181/247 (73%), Gaps = 9/247 (3%)

Query: 100 MQSFRGSIRLIQRHALTSSNTCSIP--NGVVSTKSV-GHSFHS-LNNYLSRSLHLLATRS 155
           MQSFRG IR    H   ++  CS    +GVV+  ++ G SF S +  + SRS   L    
Sbjct: 1   MQSFRGGIRSKIVHFKLATRLCSFETNDGVVAVANLCGKSFDSSIRKFTSRSSLPL---- 56

Query: 156 QVKYGYQTESWGSSNYYI-RTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASS 214
           Q K+G Q E +  S   + R+S  GLF      P F +RCI+T+ + + ++    AA  S
Sbjct: 57  QSKFGSQAEFFTPSGSLLDRSSRSGLFQWTAAMPTFPSRCITTTVNPISASQDSSAAPVS 116

Query: 215 DLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVST 274
           DLAPRIKFKRLDKT++HIMQILDKEAVE V+++REIP+IKPGYIVQLKV +PENKRR S 
Sbjct: 117 DLAPRIKFKRLDKTSKHIMQILDKEAVEEVRAKREIPEIKPGYIVQLKVEVPENKRRTSV 176

Query: 275 LKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           LKGIVIARRNAG++TTFRLRRLVAGVGVESLFPLYSP+I EIKVLDKKKVRRAKLYYLRD
Sbjct: 177 LKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPLYSPSIKEIKVLDKKKVRRAKLYYLRD 236

Query: 335 KLNPLRN 341
           K+N LR 
Sbjct: 237 KMNALRK 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733693|emb|CBI14940.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/254 (60%), Positives = 186/254 (73%), Gaps = 11/254 (4%)

Query: 92  PVTSILLKMQSFRGSIRLIQRHALTSSNTCSIP--NGVVSTKSV-GHSFHS-LNNYLSRS 147
           P+ SI  +MQSFRG IR    H   ++  CS    +GVV+  ++ G SF S +  + SRS
Sbjct: 22  PLRSI--EMQSFRGGIRSKIVHFKLATRLCSFETNDGVVAVANLCGKSFDSSIRKFTSRS 79

Query: 148 LHLLATRSQVKYGYQTESWGSSNYYI-RTSGPGLFPPAMMEPHFANRCISTSESSVESAS 206
              L    Q K+G Q E +  S   + R+S  GLF      P F +RCI+T+ + + ++ 
Sbjct: 80  SLPL----QSKFGSQAEFFTPSGSLLDRSSRSGLFQWTAAMPTFPSRCITTTVNPISASQ 135

Query: 207 YPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIP 266
              AA  SDLAPRIKFKRLDKT++HIMQILDKEAVE V+++REIP+IKPGYIVQLKV +P
Sbjct: 136 DSSAAPVSDLAPRIKFKRLDKTSKHIMQILDKEAVEEVRAKREIPEIKPGYIVQLKVEVP 195

Query: 267 ENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRR 326
           ENKRR S LKGIVIARRNAG++TTFRLRRLVAGVGVESLFPLYSP+I EIKVLDKKKVRR
Sbjct: 196 ENKRRTSVLKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPLYSPSIKEIKVLDKKKVRR 255

Query: 327 AKLYYLRDKLNPLR 340
           AKLYYLRDK+N LR
Sbjct: 256 AKLYYLRDKMNALR 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557847|ref|XP_002519953.1| 50S ribosomal protein L19, putative [Ricinus communis] gi|223540999|gb|EEF42557.1| 50S ribosomal protein L19, putative [Ricinus communis]

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 145/252 (57%), Positives = 179/252 (71%), Gaps = 13/252 (5%)

Query: 100 MQSFRGSIRLIQRHALTSSNTCSIPN-----GVVSTKSVGHSFHSLNNYLSRSLHLLATR 154
           MQSF  S  LI+R  LTSS+  ++ +       ++ K+ G +FH  N   +   HL  + 
Sbjct: 1   MQSFCRS--LIRRQTLTSSSYFTVTHFKSVGASLAIKNNGSNFHGFNGVTTSKDHLFGSF 58

Query: 155 SQV---KYGYQTESWG-SSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPA 210
                 K G   ++   SS    R+S       A+  P    R ++T+ +SVESA+  P+
Sbjct: 59  HHFNLKKSGTGMDTLTLSSGCNCRSSSLCFRKDAI--PPLPRRNMTTTGNSVESATTVPS 116

Query: 211 AASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR 270
           A++ + AP IKFKRLDKTARHIMQILDKEAV+ VK+QREIPDI+PGYIVQLKV +PENKR
Sbjct: 117 ASTVNAAPNIKFKRLDKTARHIMQILDKEAVQEVKTQREIPDIRPGYIVQLKVEVPENKR 176

Query: 271 RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLY 330
           RVS +KGIVIARRNAG++TTFRLRRLVAGVGVESLFPLYSPNI EIKVLDKKKVRRAKLY
Sbjct: 177 RVSIVKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPLYSPNIKEIKVLDKKKVRRAKLY 236

Query: 331 YLRDKLNPLRNK 342
           YLRDK+N L+ +
Sbjct: 237 YLRDKMNALKKQ 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569639|ref|XP_003553006.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Glycine max]

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 150/181 (82%), Gaps = 1/181 (0%)

Query: 162 QTESWGSSNYYIRTSGPGLFPPAM-MEPHFANRCISTSESSVESASYPPAAASSDLAPRI 220
           Q ES       +R+SG GL+ PA  + P FA+R +ST  +SV+S+S   +    ++ PRI
Sbjct: 56  QFESGNGLASVLRSSGMGLYQPAGGLVPPFASRFMSTEATSVDSSSQDSSMLEPEVPPRI 115

Query: 221 KFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVI 280
           KFKRLDKTARHIMQILDKEAVE V+ QREIPDIKPGYIVQLKV +PENKRRVS +KGIVI
Sbjct: 116 KFKRLDKTARHIMQILDKEAVEEVRGQREIPDIKPGYIVQLKVEVPENKRRVSIIKGIVI 175

Query: 281 ARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLR 340
           ARRNAG++TTFR+RR VAGVG+ESLFPLYSPNI EIKVLDKK+VRRAKLYYLR+++NPL+
Sbjct: 176 ARRNAGLNTTFRIRRQVAGVGIESLFPLYSPNIKEIKVLDKKRVRRAKLYYLRERMNPLK 235

Query: 341 N 341
           N
Sbjct: 236 N 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397787590|gb|AFO66496.1| putative 50S ribosomal protein L19 [Brassica napus]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/253 (52%), Positives = 175/253 (69%), Gaps = 34/253 (13%)

Query: 99  KMQSFRGSIRLIQRHALTSSNTCSIPNGVVS---------TKSVG--HSFHSLNNYLSRS 147
           KMQS R S RL+QR+  +SSNT  +P    S         ++  G   SF+   ++ S +
Sbjct: 29  KMQSIRSSTRLLQRNRFSSSNT--LPRFTSSFSPSWSENESRRPGGFDSFNPTRDFNSPA 86

Query: 148 LHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASY 207
            +L+++ ++          GS +  +         P      +A+RC ST   SV+S   
Sbjct: 87  KYLISSLTKA---------GSFSSAV---------PPRQNFTYASRCFSTVGDSVQST-- 126

Query: 208 PPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE 267
            P  ++ D+ PRIKFKRLDKTA+HIMQI+DKEAVE V++ REIP+I+PGYIVQLKV +PE
Sbjct: 127 -PQGSAPDMVPRIKFKRLDKTAKHIMQIVDKEAVEEVRNGREIPEIRPGYIVQLKVEVPE 185

Query: 268 NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRA 327
           NKRRVS +KGIVIARRNAG+++TFR+RRLVAGVGVES+FPLYSPN+ EIKVLDKK+VRRA
Sbjct: 186 NKRRVSIVKGIVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLREIKVLDKKRVRRA 245

Query: 328 KLYYLRDKLNPLR 340
           KLYYLRDK+N L+
Sbjct: 246 KLYYLRDKMNALK 258

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499757|ref|XP_004160907.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 151/188 (80%), Gaps = 1/188 (0%)

Query: 155 SQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASS 214
           SQ+++    +   S+    ++S P  F  A     F++R I+T+ SS+ESA     A  S
Sbjct: 3   SQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATT-SSMESALQGSPAVDS 61

Query: 215 DLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVST 274
            + PRIKFKRLDKT+RHIMQILDKEAVE VK++REIPDIKPGYIVQLKV +PENKRR+ST
Sbjct: 62  VIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQLKVEVPENKRRIST 121

Query: 275 LKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           LKGIVIARRNAG+++TFR+RR+VAGVG+ESLFPLYSPNI EIKVL+KKKVRRAKLYYLRD
Sbjct: 122 LKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPLYSPNIKEIKVLEKKKVRRAKLYYLRD 181

Query: 335 KLNPLRNK 342
           K+N L+ +
Sbjct: 182 KMNALKKQ 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523817|ref|XP_003530531.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Glycine max]

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 150/181 (82%), Gaps = 1/181 (0%)

Query: 162 QTESWGSSNYYIRTSGPGLFPPAM-MEPHFANRCISTSESSVESASYPPAAASSDLAPRI 220
           Q ES       +R+SG GL+  A  + P FA+R +ST  +SV+S+S   +    ++ PRI
Sbjct: 51  QFESGNGLASVLRSSGLGLYQQAGGVVPPFASRFMSTEATSVDSSSQDSSTLEPEVPPRI 110

Query: 221 KFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVI 280
           KFKRLDKTARHIMQILDKEAVE+V+ QREIPDIKPGYIVQLKV +PENKRRVS +KGIVI
Sbjct: 111 KFKRLDKTARHIMQILDKEAVEDVRGQREIPDIKPGYIVQLKVEVPENKRRVSIIKGIVI 170

Query: 281 ARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLR 340
           ARRNAG++TTFR+RR VAGVG+ESLFPLYSPNI EIKVLDKK+VRRAKLYYLR+++NPL+
Sbjct: 171 ARRNAGLNTTFRIRRQVAGVGIESLFPLYSPNIKEIKVLDKKRVRRAKLYYLRERMNPLK 230

Query: 341 N 341
           N
Sbjct: 231 N 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443361|ref|XP_004139446.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus]

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/261 (52%), Positives = 180/261 (68%), Gaps = 16/261 (6%)

Query: 97  LLKMQSFRGSIRLIQRHALT--SSNTCSIPNGVVSTKSV----GHSFHSLNNYLSRSLHL 150
           L++ Q    + +LI+ + L   +  +CS P  + ++ ++    G S+ SL     RS   
Sbjct: 10  LVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENSFTIPYLFGKSYGSLCGSFLRSFSR 69

Query: 151 LATR---------SQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESS 201
              +         SQ+++    +   S+    ++S P  F  A     F++R I+T+ SS
Sbjct: 70  SGNQYPEAFKNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATT-SS 128

Query: 202 VESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQL 261
           +ESA     A  S + PRIKFKRLDKT+RHIMQILDKEAVE VK++REIPDIKPGYIVQL
Sbjct: 129 MESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQL 188

Query: 262 KVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDK 321
           KV +PENKRR+STLKGIVIARRNAG+++TFR+RR+VAGVG+ESLFPLYSPNI EIKVL+K
Sbjct: 189 KVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPLYSPNIKEIKVLEK 248

Query: 322 KKVRRAKLYYLRDKLNPLRNK 342
           KKVRRAKLYYLRDK+N L+ +
Sbjct: 249 KKVRRAKLYYLRDKMNALKKQ 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540489|ref|XP_002511309.1| 50S ribosomal protein L19, putative [Ricinus communis] gi|223550424|gb|EEF51911.1| 50S ribosomal protein L19, putative [Ricinus communis]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/187 (63%), Positives = 145/187 (77%), Gaps = 8/187 (4%)

Query: 156 QVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSD 215
           + K+G QTE+         T   G    A +   F  R + T+ +S +  S   +  ++D
Sbjct: 12  ETKFGTQTEAL--------TLSKGNGSSAGLSFSFPIRNMITTGNSTKLPSTVSSVPTTD 63

Query: 216 LAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTL 275
            AP+IKFKRLDKTARHIMQILDKE+V+ VK+Q+E+PDI+PGYIVQLKV +PENKRRVS +
Sbjct: 64  AAPKIKFKRLDKTARHIMQILDKESVQEVKAQKEMPDIRPGYIVQLKVEVPENKRRVSIV 123

Query: 276 KGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
           KGIVIARRNAG++TTFRLRRLVAGVGVESLFPLYSPNI EI+VLDKKKVRRAKLYYLRDK
Sbjct: 124 KGIVIARRNAGLNTTFRLRRLVAGVGVESLFPLYSPNIKEIRVLDKKKVRRAKLYYLRDK 183

Query: 336 LNPLRNK 342
           +N L+ +
Sbjct: 184 MNALKKQ 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234249|ref|NP_192900.1| ribosomal protein L19 [Arabidopsis thaliana] gi|4539454|emb|CAB39934.1| putative protein [Arabidopsis thaliana] gi|7267863|emb|CAB78206.1| putative protein [Arabidopsis thaliana] gi|45752768|gb|AAS76282.1| At4g11630 [Arabidopsis thaliana] gi|62320252|dbj|BAD94523.1| putative protein [Arabidopsis thaliana] gi|332657631|gb|AEE83031.1| ribosomal protein L19 [Arabidopsis thaliana]

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/245 (54%), Positives = 165/245 (67%), Gaps = 26/245 (10%)

Query: 100 MQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKY 159
           MQS RGS RL+QRH  + SNT    +         +         SR L   +  S    
Sbjct: 1   MQSIRGSTRLLQRHRFSISNTLRFTSSSSCGSWSENE--------SRKLGFDSCPSSRAA 52

Query: 160 GYQTESWGSSNYYIRTSGPGLFPPAMMEPHF--ANRCISTS-ESSVESASYPPAAASSDL 216
            Y   S  ++         G    A+ + +F  A+RC ST+ +SSV+ +       S  +
Sbjct: 53  TYLISSLKNA---------GFSSSAIPKQNFTYASRCFSTTGDSSVQGS-----PESDCV 98

Query: 217 AP-RIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTL 275
            P RIKFKRLDKTA+HIMQI+DKEAVE V+S REIP+IKPGYIVQLKV +PENKRRVS +
Sbjct: 99  VPQRIKFKRLDKTAKHIMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIV 158

Query: 276 KGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
           KG+VIARRNAG+++TFR+RRLVAGVGVES+FPLYSPN+ EIKV+DKKKVRRAKLYYLRDK
Sbjct: 159 KGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDK 218

Query: 336 LNPLR 340
           +N L+
Sbjct: 219 VNALK 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2139757	225	AT4G11630 [Arabidopsis thalian	0.356	0.542	0.819	1.3e-55
TAIR|locus:2181975	229	AT5G11750 [Arabidopsis thalian	0.663	0.991	0.510	1.9e-51
TAIR|locus:2032457	222	AT1G24240 [Arabidopsis thalian	0.587	0.905	0.537	8.5e-49
TAIR|locus:2129186	225	AT4G17560 [Arabidopsis thalian	0.307	0.466	0.590	1.4e-30
TAIR|locus:2171609	229	AT5G47190 [Arabidopsis thalian	0.307	0.458	0.590	1.8e-30
TIGR_CMR|CHY_1428	113	CHY_1428 "ribosomal protein L1	0.277	0.840	0.427	1.2e-17
TIGR_CMR|CBU_0442	115	CBU_0442 "ribosomal protein L1	0.292	0.869	0.438	2.7e-17
TIGR_CMR|BA_3978	114	BA_3978 "ribosomal protein L19	0.295	0.885	0.436	4.7e-17
TIGR_CMR|GSU_0648	118	GSU_0648 "ribosomal protein L1	0.277	0.805	0.416	4.3e-16
UNIPROTKB|P66080	113	rplS "50S ribosomal protein L1	0.274	0.831	0.442	2.8e-15

TAIR|locus:2139757 AT4G11630 [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 100/122 (81%), Positives = 116/122 (95%)

Query:   219 RIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGI 278
             RIKFKRLDKTA+HIMQI+DKEAVE V+S REIP+IKPGYIVQLKV +PENKRRVS +KG+
Sbjct:   102 RIKFKRLDKTAKHIMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGV 161

Query:   279 VIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNP 338
             VIARRNAG+++TFR+RRLVAGVGVES+FPLYSPN+ EIKV+DKKKVRRAKLYYLRDK+N 
Sbjct:   162 VIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKVNA 221

Query:   339 LR 340
             L+
Sbjct:   222 LK 223

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2181975 AT5G11750 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 123/241 (51%), Positives = 155/241 (64%)

Query:   100 MQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKY 159
             MQS R S RL+QRH  + SNT    +   S+ S   +   +  + S       TR+    
Sbjct:     1 MQSIRSSTRLLQRHRFSISNTLRFTSSSSSSGSWSENESRMVGFDS----FPCTRAATYL 56

Query:   160 GYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCIXXXXXXXXXXXXXXXXXXXDLAPR 219
                 ++ G S+  I         P   +  ++ RC                     +  R
Sbjct:    57 ISSLKNVGFSSSAI---------PKQ-DFKYSLRCFSTTGDSVQSTPQGSPESDCVVPQR 106

Query:   220 IKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIV 279
             IKFKRLDKTA+HIMQI+DKEAVE V++ REIP+IKPGYIVQLKV +PENKRRVS +KG+V
Sbjct:   107 IKFKRLDKTAKHIMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVV 166

Query:   280 IARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPL 339
             IARRNAG+++TFR+RRLVAGVGVES+FPLYSPN+ EIKV+DKKKVRRAKLYYLRDK+N L
Sbjct:   167 IARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKVNAL 226

Query:   340 R 340
             +
Sbjct:   227 K 227

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2032457 AT1G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 114/212 (53%), Positives = 145/212 (68%)

Query:   135 HSFHSLNNYL---SRSLHLLATRSQVKYGYQT-ESWGSSNYYIRTSGPGLFPPAMMEP-- 188
             H F S++N L   S S    +     K G+ +  S  ++ Y I +     F    + P  
Sbjct:    14 HRF-SISNTLPFTSSSCGSWSANESRKLGFDSFPSTRAATYLISSLKNAGFSSLAVVPKQ 72

Query:   189 HFANRCIXXXXXXXXXXXXXXXXXXXDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQR 248
             +F++RC                     +  RIKFKRLDKTA+HIMQI+DKEAVE V++ R
Sbjct:    73 NFSSRCFSTTGDSVQGSPESDCV----VPQRIKFKRLDKTAKHIMQIVDKEAVEEVRTLR 128

Query:   249 EIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
             EIP+IKPGYIVQLKV +PENKRRVS +KG+VIARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct:   129 EIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPL 188

Query:   309 YSPNILEIKVLDKKKVRRAKLYYLRDKLNPLR 340
             YSPN+  IKV+DKKKVRRAKLYYLR+K+N L+
Sbjct:   189 YSPNLRVIKVVDKKKVRRAKLYYLREKVNALK 220

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2129186 AT4G17560 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 62/105 (59%), Positives = 88/105 (83%)

Query:   232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
             +M IL+++A+E  +  R +P+I+ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT 
Sbjct:   114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 173

Query:   292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 336
             R+RR++AG+GVE +FP+YSPNI EIKV+  +KVRRA+LYYLRDKL
Sbjct:   174 RIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 218

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2171609 AT5G47190 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 62/105 (59%), Positives = 88/105 (83%)

Query:   232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
             IM +L+K+A+E  ++ R +P ++ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT 
Sbjct:   118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177

Query:   292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 336
             R+RR++AG+GVE +FP+YSPNI EIKV+  +KVRRA+LYYLRDKL
Sbjct:   178 RIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 222

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TIGR_CMR|CHY_1428 CHY_1428 "ribosomal protein L19" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 41/96 (42%), Positives = 69/96 (71%)

Query:   239 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
             +++E  + ++++P+ +PG  V++   VI  N+ R+   +G+VI +R +G+S TF +RR+ 
Sbjct:     5 KSLEEEQLRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVS 64

Query:   298 AGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 333
              G+GVE  FPL+SP I +I+V+ + KVRRA+LYYLR
Sbjct:    65 YGIGVERTFPLHSPRIEKIEVIRRGKVRRARLYYLR 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0442 CBU_0442 "ribosomal protein L19" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 212 (79.7 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 46/105 (43%), Positives = 71/105 (67%)

Query:   231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGIST 289
             +I+Q+L+ E  +     +EIPD + G  V ++V + E N+ R+   +G+VIARR+ G+++
Sbjct:     3 NIIQLLETEQTQG----KEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNS 58

Query:   290 TFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
             +F +R++  G GVE +F LYSP I  IKV  +  VRRAKLYYLR+
Sbjct:    59 SFTVRKVSHGEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRN 103

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|BA_3978 BA_3978 "ribosomal protein L19" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 210 (79.0 bits), Expect = 4.7e-17, P = 4.7e-17
 Identities = 45/103 (43%), Positives = 68/103 (66%)

Query:   233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTF 291
             MQ L  E  +  + + ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF
Sbjct:     1 MQQLIAEITKG-QLKTDLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETF 59

Query:   292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
              +R++  GVGVE  FP+++P I +I+VL + KVRRAKLYYLR+
Sbjct:    60 TVRKISYGVGVERTFPVHTPRIAKIEVLRRGKVRRAKLYYLRN 102

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0648 GSU_0648 "ribosomal protein L19" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 202 (76.2 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 40/96 (41%), Positives = 65/96 (67%)

Query:   239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
             +A+E  + ++ IP  KPG  +++ V I E +K R+   +G+ I+R+N GI  +F +R++ 
Sbjct:     5 DAIELEQMKKNIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTVRKIS 64

Query:   298 AGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 333
               +GVE +FPL+SP +  I+V+ +  VRRAKLYYLR
Sbjct:    65 NNIGVERVFPLHSPTVDAIEVITRGHVRRAKLYYLR 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P66080 rplS "50S ribosomal protein L19" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 195 (73.7 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 42/95 (44%), Positives = 59/95 (62%)

Query:   241 VENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
             V+    + +IP   PG  + + V + E  K R+   KG+VI R+  GI  TF +R+   G
Sbjct:     7 VDKPSLRDDIPAFNPGDTINVHVKVIEGAKERLQVFKGVVIRRQGGGIRETFTVRKESYG 66

Query:   300 VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
             VGVE  FP++SPNI  I+V+ +  VRRAKLYYLR+
Sbjct:    67 VGVERTFPVHSPNIDHIEVVTRGDVRRAKLYYLRE 101

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G11630	ribosomal protein L19 family protein; ribosomal protein L19 family protein; FUNCTIONS IN- structural constituent of ribosome; INVOLVED IN- translation, ribosome biogenesis; LOCATED IN- ribosome, intracellular; CONTAINS InterPro DOMAIN/s- Ribosomal protein L19 (InterPro-IPR001857); BEST Arabidopsis thaliana protein match is- ribosomal protein L19 family protein (TAIR-AT5G11750.1); Has 5377 Blast hits to 5377 proteins in 1490 species- Archae - 0; Bacteria - 2923; Metazoa - 94; Fungi - 42; Plants - 95; Viruses - 0; Other Eukaryotes - 2223 (source- NCBI BLink). (225 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	PSRP6	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6); plastid-specific ribosomal protein 6 precurso [...] (106 aa)							•		0.929
	SSR16	SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16); structural constituent of ribosome; Encodes ribosom [...] (113 aa)	•		•	•			•		0.900
	ATCG00790.1-P	unknown protein; chloroplast gene encoding a ribosomal protein L16, which is a constituent of 5 [...] (135 aa)			•	•	•		•		0.882
	PSRP5	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5); PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5 (PSR [...] (148 aa)							•		0.875
	emb2394	emb2394 (embryo defective 2394); structural constituent of ribosome; embryo defective 2394 (emb [...] (223 aa)				•	•		•		0.833
	AT1G16740	ribosomal protein L20 family protein; ribosomal protein L20 family protein; FUNCTIONS IN- struc [...] (126 aa)	•		•	•	•		•		0.828
	PRPL11	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome; mutant has Decrease [...] (222 aa)				•	•		•		0.806
	AT5G56940	ribosomal protein S16 family protein; ribosomal protein S16 family protein; FUNCTIONS IN- struc [...] (135 aa)	•		•				•		0.796
	ATCG00800.1-P	unknown protein; encodes a chloroplast ribosomal protein S3, a constituent of the small subunit [...] (218 aa)				•			•		0.793
	AT4G01310	ribosomal protein L5 family protein; ribosomal protein L5 family protein; FUNCTIONS IN- structu [...] (262 aa)				•	•		•		0.791

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	2e-38
PRK05338	116	PRK05338, rplS, 50S ribosomal protein L19; Provisi	2e-32
TIGR01024	113	TIGR01024, rplS_bact, ribosomal protein L19, bacte	1e-30
COG0335	115	COG0335, RplS, Ribosomal protein L19 [Translation,	2e-30
CHL00084	117	CHL00084, rpl19, ribosomal protein L19	9e-29

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score =  132 bits (334), Expect = 2e-38
 Identities = 45/104 (43%), Positives = 74/104 (71%), Gaps = 3/104 (2%)

Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
           M ++ +  +E  + ++++P+ + G  V++ V I E NK R+   +G+VIA+R  G+++TF
Sbjct: 1   MNLIKE--IEAEQLKKDLPEFRVGDTVKVHVKIKEGNKERIQVFEGVVIAKRGRGLNSTF 58

Query: 292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            +R++  GVGVE +FPL+SP I +I+V+ + KVRRAKLYYLRD 
Sbjct: 59  TVRKISQGVGVERVFPLHSPRIDKIEVVRRGKVRRAKLYYLRDL 102

Length = 113

>gnl|CDD|235418 PRK05338, rplS, 50S ribosomal protein L19; Provisional

 Score =  116 bits (294), Expect = 2e-32
 Identities = 46/104 (44%), Positives = 72/104 (69%), Gaps = 3/104 (2%)

Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
           M ++ +  +E  + +++IP+ +PG  V++ V + E NK R+   +G+VIARR  G++ TF
Sbjct: 1   MNLIKE--IEAEQLRKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETF 58

Query: 292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            +R++  GVGVE  FPL+SP I  I+V+ + KVRRAKLYYLR+ 
Sbjct: 59  TVRKISYGVGVERTFPLHSPRIDSIEVVRRGKVRRAKLYYLREL 102

Length = 116

>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type

 Score =  112 bits (282), Expect = 1e-30
 Identities = 46/104 (44%), Positives = 71/104 (68%), Gaps = 3/104 (2%)

Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
             ++ +  +E  + ++++PD + G  V++ V I E  K R+   +G+VIARR  GI  TF
Sbjct: 1   QNLIKQ--IEQEQLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETF 58

Query: 292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            +R++  GVGVE +FPL+SPNI  I+V+ + KVRRAKLYYLR++
Sbjct: 59  TVRKISYGVGVERIFPLHSPNIDSIEVVRRGKVRRAKLYYLRER 102

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|223412 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

 Score =  111 bits (280), Expect = 2e-30
 Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
           M I   + +E  + +++IP  +PG  V++ V I E +K RV   +G+VIARR  GIS TF
Sbjct: 1   MNIPIIQQLEQEQIKKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETF 60

Query: 292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            +R++  GVGVE +FPL+SP I  I+V+ + KVRRAKLYYLR++
Sbjct: 61  TVRKISYGVGVERVFPLHSPLIESIEVVRRGKVRRAKLYYLRER 104

Length = 115

>gnl|CDD|177023 CHL00084, rpl19, ribosomal protein L19

 Score =  106 bits (268), Expect = 9e-29
 Identities = 43/100 (43%), Positives = 71/100 (71%), Gaps = 1/100 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + +E+   ++ +P I+ G  V++ V+I E NK RV   +G VIA++N+G++TT  +R++ 
Sbjct: 9   KEIESEFLKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVF 68

Query: 298 AGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLN 337
            G+GVE +F L+SP +  I+VL + KVRRAKLYYLR+++ 
Sbjct: 69  QGIGVERVFLLHSPKLASIEVLRRSKVRRAKLYYLRNRVG 108

Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
CHL00084	117	rpl19 ribosomal protein L19	100.0
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	100.0
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	100.0
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	100.0
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	100.0
KOG1698	201	consensus Mitochondrial/chloroplast ribosomal prot	100.0

>CHL00084 rpl19 ribosomal protein L19

Probab=100.00  E-value=1.5e-39  Score=273.75  Aligned_cols=106  Identities=41%  Similarity=0.737  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEee
Q 019373          230 RHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (342)
Q Consensus       230 ~~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpL  308 (342)
                      .++++.+++++     .++++|+|+|||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+
T Consensus         5 ~~~i~~~~~~~-----~~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fpl   79 (117)
T CHL00084          5 QQLVKEIESEF-----LKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLL   79 (117)
T ss_pred             HHHHHHHHHHH-----hhcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEec
Confidence            35555555444     4579999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEeeeCcccccceeeeccCCCccc
Q 019373          309 YSPNILEIKVLDKKKVRRAKLYYLRDKLNPLR  340 (342)
Q Consensus       309 ySP~IksIEVLRrgKVRRAKLYYLRdr~~~l~  340 (342)
                      |||.|++|||++++|||||||||||++.++-.
T Consensus        80 ~SP~I~~IeV~r~gkvRRAKLyYLR~~~gKaa  111 (117)
T CHL00084         80 HSPKLASIEVLRRSKVRRAKLYYLRNRVGKAA  111 (117)
T ss_pred             CCCccceEEEEEeCccchheeEEeccCcChhh
Confidence            99999999999999999999999999988654

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=100.00  E-value=2.2e-39  Score=272.27  Aligned_cols=105  Identities=43%  Similarity=0.788  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY  309 (342)
Q Consensus       231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy  309 (342)
                      ++|+.++.+++     ++++|+|++||+|+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|
T Consensus         2 ~~i~~~~~~~~-----~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~   76 (116)
T PRK05338          2 NLIKEIEAEQL-----RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLH   76 (116)
T ss_pred             cHHHHHHHHHh-----hcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecCC
Confidence            45666665544     478999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeeCcccccceeeeccCCCccc
Q 019373          310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPLR  340 (342)
Q Consensus       310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l~  340 (342)
                      ||.|++|||++++|||||||||||++.++-.
T Consensus        77 SP~I~~IeV~r~gkvRRAKLyYLR~~~gK~a  107 (116)
T PRK05338         77 SPRIDSIEVVRRGKVRRAKLYYLRELRGKAA  107 (116)
T ss_pred             CCcccEEEEEEecccchhheeeeccCcchhh
Confidence            9999999999999999999999999987643

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-39  Score=271.47  Aligned_cols=105  Identities=49%  Similarity=0.818  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY  309 (342)
Q Consensus       231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy  309 (342)
                      .+++.|+++++.     +++|+|+|||+|+|++++.| +|+|+|.|+|+||+++|+|+++|||||++++|+|||++||+|
T Consensus         4 ~~i~~le~~q~~-----~~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~Fp~~   78 (115)
T COG0335           4 PIIQQLEQEQIK-----KDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVFPLH   78 (115)
T ss_pred             HHHHHHHHHHHH-----hhCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEeecC
Confidence            478888877766     56999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeeCcccccceeeeccCCCccc
Q 019373          310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPLR  340 (342)
Q Consensus       310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l~  340 (342)
                      ||.|++|||+++||||||||||||++.++..
T Consensus        79 SP~Ie~IeV~rrGkVRRAKLYYLR~~~GKaA  109 (115)
T COG0335          79 SPLIESIEVVRRGKVRRAKLYYLRERRGKAA  109 (115)
T ss_pred             CCceeEEEEEecCceeeeeeEeeecccccce
Confidence            9999999999999999999999999887643

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=100.00  E-value=4.1e-39  Score=269.59  Aligned_cols=105  Identities=44%  Similarity=0.793  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY  309 (342)
Q Consensus       231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy  309 (342)
                      ++|+.+++++     .++++|+|+|||+|+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|
T Consensus         2 ~~i~~~e~~~-----~~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl~   76 (113)
T TIGR01024         2 NLIKQIEQEQ-----LKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLH   76 (113)
T ss_pred             cHHHHHHHHH-----hhcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEcC
Confidence            3566665543     3589999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeeCcccccceeeeccCCCccc
Q 019373          310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPLR  340 (342)
Q Consensus       310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l~  340 (342)
                      ||.|++|+|++++|+|||||||||++.++-.
T Consensus        77 SP~I~~IeVl~~~kvrRaKLyYLR~~~gK~a  107 (113)
T TIGR01024        77 SPNIDSIEVVRRGKVRRAKLYYLRERRGKAA  107 (113)
T ss_pred             CCccceEEEEEeCccchhheeeeccCcchhh
Confidence            9999999999999999999999999988644

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=6.8e-39  Score=267.23  Aligned_cols=104  Identities=44%  Similarity=0.809  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY  309 (342)
Q Consensus       231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy  309 (342)
                      +||+.++     +.+.+.++|+|+|||+|+|++.+.| +|+|+|.|+|+||+++++|+++||||||+++|+|||++||||
T Consensus         2 ~~i~~~e-----~~~~~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f~l~   76 (113)
T PF01245_consen    2 NLIEEVE-----REQIKKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVFPLY   76 (113)
T ss_dssp             HHHHHHH-----HTTCSSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEEETT
T ss_pred             hHHHHHH-----HHHhhcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEEEcC
Confidence            4555544     3345689999999999999999998 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeeCcccccceeeeccCCCcc
Q 019373          310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPL  339 (342)
Q Consensus       310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l  339 (342)
                      ||.|++|||++++|+||||||||||+.++-
T Consensus        77 SP~I~~IeV~~~~kvrRaKLyYLR~~~gK~  106 (113)
T PF01245_consen   77 SPLIKSIEVLRRGKVRRAKLYYLRDRKGKA  106 (113)
T ss_dssp             STTEEEEEEEEEBECSSSSTGGGGCTTSHH
T ss_pred             CCCeEEEEEEEecccchhhhhhhhcCccch
Confidence            999999999999999999999999998764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>KOG1698 consensus Mitochondrial/chloroplast ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-35  Score=268.39  Aligned_cols=125  Identities=56%  Similarity=0.833  Sum_probs=120.5

Q ss_pred             cccccccchHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEee
Q 019373          218 PRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLV  297 (342)
Q Consensus       218 pr~K~K~l~K~a~~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi  297 (342)
                      ..+++..+++.+.++|+.||++++++....+++|+|++||||+|++.++++|.++..|.||||+++++|+++||+|||++
T Consensus        62 ~~~~f~~~~~~~~~~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~s~f~Gi~I~R~~~Gl~atf~LRnvI  141 (201)
T KOG1698|consen   62 QYPEFLPLRKVAKRIMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPENKRKVSRFKGICIRRRNAGLNATFLLRNVI  141 (201)
T ss_pred             cCcccccchhHHHHHHHhhCHHHHHHHHhcccCCccccccEEEEEecCCccCCceeEEEEEEEEecccCCcceEEeeehh
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEEeecCCccceEEEeeeCcccccceeeeccCCCcccCC
Q 019373          298 AGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK  342 (342)
Q Consensus       298 ~GVGVEr~FpLySP~IksIEVLRrgKVRRAKLYYLRdr~~~l~k~  342 (342)
                      +|+|||..||||||+|++|+|++..|+|||+||||||..++|+.+
T Consensus       142 agvGVEi~~pLYsP~IkeI~Vlk~~k~rra~LyYLRd~lp~lstf  186 (201)
T KOG1698|consen  142 AGVGVEIVFPLYSPNIKEIKVLKLEKRRRAKLYYLRDALPELSTF  186 (201)
T ss_pred             hCceeEEEEeccCCCeeEEEEechhhcccchhhhhhccccccCch
Confidence            999999999999999999999999999999999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
3bbo_R	233	Homology Model For The Spinach Chloroplast 50s Subu		1e-32
2j01_T	146	Structure Of The Thermus Thermophilus 70s Ribosome		6e-14
1vsa_N	146	Crystal Structure Of A 70s Ribosome-Trna Complex Re		6e-14
3fin_T	138	T. Thermophilus 70s Ribosome In Complex With Mrna,		7e-14
3tve_R	137	Crystal Structure Analysis Of Ribosomal Decoding. T		7e-14
1vs6_P	115	Crystal Structure Of The Bacterial Ribosome From Es		8e-14
3pyo_P	137	Crystal Structure Of A Complex Containing Domain 3		9e-14
1p85_N	114	Real Space Refined Coordinates Of The 50s Subunit F		9e-14
1nkw_N	166	Crystal Structure Of The Large Ribosomal Subunit Fr		1e-13
1pnu_N	125	Crystal Structure Of A Streptomycin Dependent Ribos		2e-13
2ftc_K	98	Structural Model For The Large Subunit Of The Mamma		8e-10

>pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 86/105 (81%)
Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
           IM IL+K+AV   +  R +P I+ G IVQ+++ +PENKRR+S  KGIVI+R+NAGI TT 
Sbjct: 122 IMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTI 181
Query: 292 RLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 336
           R+RR++AGVGVE +FPLYSPNI EIKV+  +KVR+A+LYYLRDKL
Sbjct: 182 RIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKL 226

>pdb|2J01|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 146

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  G
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 300 VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           VGVE +FPL+SP I +I ++ + + RRAKLY++R+
Sbjct: 70  VGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|1VSA|N Chain N, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 146

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 249 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFP 307
           ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  GVGVE +FP
Sbjct: 18  DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP 77
Query: 308 LYSPNILEIKVLDKKKVRRAKLYYLRD 334
           L+SP I +I ++ + + RRAKLY++R+
Sbjct: 78  LHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|3FIN|T Chain T, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 138

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  G
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 300 VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           VGVE +FPL+SP I +I ++ + + RRAKLY++R+
Sbjct: 70  VGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|3TVE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 137

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  G
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 300 VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           VGVE +FPL+SP I +I ++ + + RRAKLY++R+
Sbjct: 70  VGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|1VS6|P Chain P, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 115

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           +E  + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G
Sbjct: 8   LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNG 67
Query: 300 VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct: 68  EGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103

>pdb|3PYO|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 137

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 249 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFP 307
           ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  GVGVE +FP
Sbjct: 18  DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP 77
Query: 308 LYSPNILEIKVLDKKKVRRAKLYYLRD 334
           L+SP I +I ++ + + RRAKLY++R+
Sbjct: 78  LHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|1P85|N Chain N, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 114

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           +E  + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G
Sbjct: 7   LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNG 66
Query: 300 VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct: 67  EGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 102

>pdb|1NKW|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 248 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLF 306
           R++PD +PG  V++   + E N+ R    +G+VIA   +G   +F +R++  G GVE +F
Sbjct: 22  RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVF 81
Query: 307 PLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           P  SP + ++ ++++ KVRRAKLYYLR+
Sbjct: 82  PFASPLVNQVTIVERGKVRRAKLYYLRE 109

>pdb|1PNU|N Chain N, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 125

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 248 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLF 306
           R++PD +PG  V++   + E N+ R    +G+VIA   +G   +F +R++  G GVE +F
Sbjct: 21  RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVF 80
Query: 307 PLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           P  SP + ++ ++++ KVRRAKLYYLR+
Sbjct: 81  PFASPLVNQVTIVERGKVRRAKLYYLRE 108

>pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 98

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY 309
           IP+   G I+++    P    ++S   GI I R   G+  TF LR ++ G GVE  F LY
Sbjct: 1   IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELY 60
Query: 310 SPNILEIKVLDKKKVRRAKLYYLRDKL 336
           +P + EI+V+  +K     L YLRD L
Sbjct: 61  NPRVQEIQVVKLEKRLDDSLLYLRDAL 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	2e-45
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	4e-36
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	8e-31
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	1e-30
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	3e-30

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score =  154 bits (390), Expect = 2e-45
 Identities = 71/140 (50%), Positives = 97/140 (69%), Gaps = 4/140 (2%)

Query: 196 STSESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKP 255
           S +  + E       A + +  PR +  +L      IM IL+K+AV   +  R +P I+ 
Sbjct: 90  SVAVVAEEELPVESEAEAEERPPRQQRVKLG----DIMGILNKKAVHAAEELRPVPGIRT 145

Query: 256 GYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILE 315
           G IVQ+++ +PENKRR+S  KGIVI+R+NAGI TT R+RR++AGVGVE +FPLYSPNI E
Sbjct: 146 GDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKE 205

Query: 316 IKVLDKKKVRRAKLYYLRDK 335
           IKV+  +KVR+A+LYYLRDK
Sbjct: 206 IKVVSHRKVRKARLYYLRDK 225

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score =  125 bits (315), Expect = 4e-36
 Identities = 33/87 (37%), Positives = 47/87 (54%)

Query: 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY 309
           IP+   G I+++    P    ++S   GI I R   G+  TF LR ++ G GVE  F LY
Sbjct: 1   IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELY 60

Query: 310 SPNILEIKVLDKKKVRRAKLYYLRDKL 336
           +P + EI+V+  +K     L YLRD L
Sbjct: 61  NPRVQEIQVVKLEKRLDDSLLYLRDAL 87

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Length = 146

 Score =  113 bits (284), Expect = 8e-31
 Identities = 38/97 (39%), Positives = 65/97 (67%), Gaps = 1/97 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++ 
Sbjct: 8   KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVS 67

Query: 298 AGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
            GVGVE +FPL+SP I +I ++ + + RRAKLY++R+
Sbjct: 68  YGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114

 Score =  111 bits (280), Expect = 1e-30
 Identities = 37/97 (38%), Positives = 64/97 (65%), Gaps = 1/97 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + +E  + ++++P  +PG  V++KV + E +K+R+   +G+VIA RN G+ + F +R++ 
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64

Query: 298 AGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
            G GVE +F  +SP +  I V  +  VR+AKLYYLR+
Sbjct: 65  NGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE 101

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166

 Score =  112 bits (281), Expect = 3e-30
 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 7/109 (6%)

Query: 233 MQILDKEAVENVKSQ------REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNA 285
           MQ   K     +         R++PD +PG  V++   + E N+ R    +G+VIA   +
Sbjct: 1   MQTHIKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGS 60

Query: 286 GISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           G   +F +R++  G GVE +FP  SP + ++ ++++ KVRRAKLYYLR+
Sbjct: 61  GSRKSFTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	100.0
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	100.0
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	100.0
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	100.0
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	100.0

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=100.00  E-value=1.4e-41  Score=284.05  Aligned_cols=104  Identities=38%  Similarity=0.709  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY  309 (342)
Q Consensus       231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy  309 (342)
                      ++|+.+|++     +.++|+|+|+|||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus         2 ~~i~~~e~~-----~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~   76 (114)
T 3r8s_P            2 NIIKQLEQE-----QMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTH   76 (114)
T ss_dssp             CHHHHHHGG-----GCCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred             hHHHHHHHH-----HhccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecC
Confidence            356666554     44689999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeeCcccccceeeeccCCCcc
Q 019373          310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPL  339 (342)
Q Consensus       310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l  339 (342)
                      ||.|++|||++++||||||||||||+.++-
T Consensus        77 SP~I~~IeV~r~gkvRRAKLyYLR~~~GKa  106 (114)
T 3r8s_P           77 SPVVDSISVKRRGAVRKAKLYYLRERTGKA  106 (114)
T ss_dssp             CTTEEEEEEEECEECCSSCCGGGTTCCHHH
T ss_pred             CCccceEEEEEccccchhheeeecCCcchH
Confidence            999999999999999999999999998754

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=100.00  E-value=2.3e-41  Score=297.64  Aligned_cols=109  Identities=34%  Similarity=0.610  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY  309 (342)
Q Consensus       231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy  309 (342)
                      ++|+.|+++++.+. .++++|+|+|||||+|++++.| +|+|+|.|+||||+++|+|+++||||||+++|+|||++||||
T Consensus         6 ~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fplh   84 (166)
T 2zjr_M            6 KINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA   84 (166)
T ss_dssp             CCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred             HHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecC
Confidence            68889998887644 4689999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeeCcccccceeeeccCCCccc
Q 019373          310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPLR  340 (342)
Q Consensus       310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l~  340 (342)
                      ||.|++|||+++|||||||||||||+.++..
T Consensus        85 SP~I~kIEVvrrGKVRRAKLYYLRd~~GKaA  115 (166)
T 2zjr_M           85 SPLVNQVTIVERGKVRRAKLYYLRELRGKAA  115 (166)
T ss_dssp             CTTEEEEEEEECCCCSSSCCGGGCC------
T ss_pred             CCccceEEEEeccccchhheeeccCCCCchh
Confidence            9999999999999999999999999988654

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=2.9e-40  Score=269.90  Aligned_cols=91  Identities=36%  Similarity=0.612  Sum_probs=89.4

Q ss_pred             CCCCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeecCCccceEEEeeeCcccccce
Q 019373          250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKL  329 (342)
Q Consensus       250 iPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLySP~IksIEVLRrgKVRRAKL  329 (342)
                      +|+|+|||||+|++++.++|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||.|++|||++++|||||||
T Consensus         1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKL   80 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSL   80 (98)
T ss_pred             CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCcccceeE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCccc
Q 019373          330 YYLRDKLNPLR  340 (342)
Q Consensus       330 YYLRdr~~~l~  340 (342)
                      |||||++++++
T Consensus        81 yYLR~~~~~~s   91 (98)
T 2ftc_K           81 LYLRDALPEYS   91 (98)
T ss_pred             EEeccCCcccc
Confidence            99999999876

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=100.00  E-value=2.9e-40  Score=285.85  Aligned_cols=105  Identities=34%  Similarity=0.699  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEee
Q 019373          230 RHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (342)
Q Consensus       230 ~~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpL  308 (342)
                      .+||+.++.+     +.++|+|+|+|||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++|||
T Consensus         4 ~~li~~ie~~-----~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl   78 (146)
T 3v2d_T            4 GALIKLVESR-----YVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL   78 (146)
T ss_dssp             HHHHHHHHHT-----TCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHHHH-----HhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence            4566665544     45689999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEeeeCcccccceeeeccCCCcc
Q 019373          309 YSPNILEIKVLDKKKVRRAKLYYLRDKLNPL  339 (342)
Q Consensus       309 ySP~IksIEVLRrgKVRRAKLYYLRdr~~~l  339 (342)
                      |||.|++|||++++||||||||||||+.++-
T Consensus        79 ~SP~I~~IeVvrrgkVRRAKLYYLR~~~GKa  109 (146)
T 3v2d_T           79 HSPLIQKIDIVQRGRARRAKLYFIRNLSDRE  109 (146)
T ss_dssp             TCTTEEEEEEEECEECSSSCCGGGGGCCHHH
T ss_pred             CCCccceEEEEecCccchhheeeccCCcchh
Confidence            9999999999999999999999999998753

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.4e-42  Score=315.12  Aligned_cols=112  Identities=60%  Similarity=0.965  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEee
Q 019373          229 ARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (342)
Q Consensus       229 a~~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpL  308 (342)
                      +.++|+.|+++++++.+.++++|+|++||||+|++++.|+|+|+|.|+||||+++|+|+++||||||+++|+|||++|||
T Consensus       119 ~~~iM~~L~re~ie~~q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpL  198 (233)
T 3bbo_R          119 LGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL  198 (233)
T ss_dssp             --CCSSSCSTTHHHHTTCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEec
Confidence            44899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEeeeCcccccceeeeccCCCccc
Q 019373          309 YSPNILEIKVLDKKKVRRAKLYYLRDKLNPLR  340 (342)
Q Consensus       309 ySP~IksIEVLRrgKVRRAKLYYLRdr~~~l~  340 (342)
                      |||.|++|||+|+|||||||||||||++++++
T Consensus       199 hSP~I~kIEVvRrgKVRRAKLYYLRd~lp~~S  230 (233)
T 3bbo_R          199 YSPNIKEIKVVSHRKVRKARLYYLRDKLPRLS  230 (233)
T ss_dssp             BSSSSSCCCCCCCSCCCCSCSSCCCCSSTTCS
T ss_pred             CCCccceEEEEeccccchhhhhhhhcCCcccc
Confidence            99999999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	6e-30
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	4e-28
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	1e-23

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (271), Expect = 6e-30
 Identities = 37/98 (37%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + +E  + ++++P  +PG  V++KV + E +K+R+   +G+VIA RN G+ + F +R++ 
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64

Query: 298 AGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct: 65  NGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 102

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  103 bits (258), Expect = 4e-28
 Identities = 37/105 (35%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 233 MQILDKEAVENVKSQ--REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
           ++I   E +  ++    R++PD +PG  V++   + E  R R    +G+VIA   +G   
Sbjct: 4   IKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRK 63

Query: 290 TFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 334
           +F +R++  G GVE +FP  SP + ++ ++++ KVRRAKLYYLR+
Sbjct: 64  SFTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score = 92.4 bits (229), Expect = 1e-23
 Identities = 38/98 (38%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++ 
Sbjct: 8   KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVS 67

Query: 298 AGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 335
            GVGVE +FPL+SP I +I ++ + + RRAKLY++R+ 
Sbjct: 68  YGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNL 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	100.0
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	100.0
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	100.0
d1zq1a1	74	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	84.48

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.4e-40  Score=273.71  Aligned_cols=99  Identities=35%  Similarity=0.753  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEee
Q 019373          230 RHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (342)
Q Consensus       230 ~~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpL  308 (342)
                      ++||+.+|++     +. +++|+|+|||+|+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++|||
T Consensus         9 ~~li~~ie~~-----~~-k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl   82 (108)
T d2zjrm1           9 GELLRGIEQD-----HT-RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF   82 (108)
T ss_dssp             HHHHHHTTGG-----GC-CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHHHH-----hC-cCCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEEc
Confidence            4666666543     33 48999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEeeeCcccccceeeecc
Q 019373          309 YSPNILEIKVLDKKKVRRAKLYYLRD  334 (342)
Q Consensus       309 ySP~IksIEVLRrgKVRRAKLYYLRd  334 (342)
                      |||+|++|||++++||||||||||||
T Consensus        83 ~SP~i~~IeV~r~~kvRRakLyYLRd  108 (108)
T d2zjrm1          83 ASPLVNQVTIVERGKVRRAKLYYLRE  108 (108)
T ss_dssp             TCTTEEEEEEEECCCCSSSCCGGGCC
T ss_pred             CCCCccEEEEEEecceeeeeeeeecC
Confidence            99999999999999999999999997

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3e-39  Score=275.29  Aligned_cols=104  Identities=35%  Similarity=0.704  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeec
Q 019373          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLY  309 (342)
Q Consensus       231 ~LM~~LekEevee~~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLy  309 (342)
                      .||+.+|     +.+.+.++|+|++||||+|++.|.| +|+|+|.|+|+||+++++|+++||||||+++|+|||++||||
T Consensus         5 ~Li~~iE-----~~~~k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fpl~   79 (138)
T d2j01t1           5 ALIKLVE-----SRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLH   79 (138)
T ss_dssp             HHHHHHH-----CCCCCSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECSS
T ss_pred             HHHHHHH-----HHhhcccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEecc
Confidence            4555544     4456789999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeeCcccccceeeeccCCCcc
Q 019373          310 SPNILEIKVLDKKKVRRAKLYYLRDKLNPL  339 (342)
Q Consensus       310 SP~IksIEVLRrgKVRRAKLYYLRdr~~~l  339 (342)
                      ||+|++|||++++||||||||||||+.++-
T Consensus        80 SP~I~~IeVvr~gkvRRAKLyYLR~~~gk~  109 (138)
T d2j01t1          80 SPLIQKIDIVQRGRARRAKLYFIRNLSDRE  109 (138)
T ss_dssp             SSCSCCCBCCCCBCCSSSSCGGGSSSCSSS
T ss_pred             CCCccceEEeecCceehhheeehhhccchh
Confidence            999999999999999999999999998863

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.2e-41  Score=278.46  Aligned_cols=96  Identities=38%  Similarity=0.700  Sum_probs=92.0

Q ss_pred             hcCCCCCCCCCCCEEEEEEEeec-CCcccceEEEEEEEEecCCCceeEEEEEeecCceEEEEEeecCCccceEEEeeeCc
Q 019373          245 KSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKK  323 (342)
Q Consensus       245 ~~kkdiPeFrpGDIV~V~~~I~E-nKeRvQ~FeGVVIarRnrGl~STFTLRnIi~GVGVEr~FpLySP~IksIEVLRrgK  323 (342)
                      +.++++|+|+|||+|+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|||++++|
T Consensus        11 q~k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl~SP~I~~IeV~~~~k   90 (114)
T d2gycn1          11 QMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGA   90 (114)
T ss_dssp             TTCCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCCCSSCTTCCCCCCCSC
T ss_pred             HhhccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEeCCCCcceeEEeccCc
Confidence            45679999999999999999999 89999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeeccCCCccc
Q 019373          324 VRRAKLYYLRDKLNPLR  340 (342)
Q Consensus       324 VRRAKLYYLRdr~~~l~  340 (342)
                      |||||||||||+.++-.
T Consensus        91 vRRaKLyYLR~~~gk~a  107 (114)
T d2gycn1          91 VRKAKLYYLRERTGKAA  107 (114)
T ss_dssp             CCCSCTTCCCCSSSCCC
T ss_pred             eehhheeeeccCcchHH
Confidence            99999999999988643

>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=84.48  E-value=0.63  Score=34.55  Aligned_cols=63  Identities=25%  Similarity=0.401  Sum_probs=41.0

Q ss_pred             CCCCCCEEEEEEEeecCCcccceEEEEEEEEecCCCceeEEEEEeecC--ceEEEEEeecCCccceEEEeeeCcc
Q 019373          252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG--VGVESLFPLYSPNILEIKVLDKKKV  324 (342)
Q Consensus       252 eFrpGDIV~V~~~I~EnKeRvQ~FeGVVIarRnrGl~STFTLRnIi~G--VGVEr~FpLySP~IksIEVLRrgKV  324 (342)
                      .+.+||.|+|.....-+   -..|+|+++-.-.-+-...++| |.-+|  +|+..      -.|++|||+.++|+
T Consensus        10 ~~~~GD~Vri~~~~~~~---~~~~eGilmP~~e~s~~~~ivl-KL~nGYNiGi~~------~~i~~ievlek~kv   74 (74)
T d1zq1a1          10 NINVGDFVRITKEEDGE---EVTYEGYIMPPYELSAGDTLVL-KLENGYNIGIAL------EKIRRIEVLERAKV   74 (74)
T ss_dssp             TCCTTCEEEEEEESSSS---EEECCEEECCCCTTCCCSEEEE-EETTSCEEEEEG------GGEEEEEEEECCCC
T ss_pred             CCCCCCEEEEEEecCCC---ceEEEEEEcCCcccCCCCEEEE-EecCceeeccch------hHeeEEEEEeeccC
Confidence            57899999997653211   1489999997643233344555 45554  44432      46889999998775