Citrus Sinensis ID: 019375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MSNNEKKSSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSPYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNNNPSTPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEKKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMRPTFPQEFLLSQFLPSANNNQGVNIPSSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccccHHcccccccccccccccEEccccccccccccHHccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEEccccccccEEEEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHcccccc
Coil and Loop (DISEMBL)
msnnekkssyhfydpfdcnphgfnrlgfnffqdnnpsmymnpptpavenlqaaafdptspyvsftdclhgnsmdytslsrafdiscssseiitppvddtpkkttafagdsagatennnnpstpnssvssssneagadedsgnhsnkkdkqqvkgqedgdddeksknkvnkpkkekkqreprfafltKSEIDHLEDGYRWrkygqkavknspyprsyyrctsqkctvkkrversyqdptvvittyegqhnhqcpatlrgnaagmlspsllasasmrptfpqefllsqflpsannnqgvnipssmyyqnlnispqqqqqqlgnqvpdygllqdlvpsfinrqqp
Flexible Loop (DISEMBL)
MSNNEKKSSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSPYVSFTDCLHGNSMDYTSLSRAFDISCSSSeiitppvddtpkKTTAFAGDsagatennnnpstpnssvsssSNEAGadedsgnhsnkkdkqqvkgqedgdddeksknkvnkpkkekkqreprfafltkseidhledgyrwrkygqkavknspyprsyyrctsqkctvkkrversyqDPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMRPTFPQEFLLSQFLPSANNNQGVNIPSSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP
Low Complexity Region (SEG)
MSNNEKKSSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSPYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIItppvddtpkkttAFAGDSAGATEnnnnpstpnssvssssnEAGADEDSGNHSNKKDKQQVKGQEDGDDDeksknkvnkpkkekkQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGNaagmlspsllasasMRPTFPQEFLLSQFLPSANNNQGVNIPSSMYYQNLNISPqqqqqqLGNQVPDYGLLQDLVPSFINRQQP
Disordered region (IsUnstruct)
*********YHFYDPFDCNPHGFNRLGFNFFQDN***************LQAAAFDPTSPYVSFTDCLHGNSMDYTSLSRAFDISC************************************************************************************************AFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLR***********************EFLLSQFL**************MYYQ******************DYGLLQDLV*********
Disordered Region (DISOPRED)
**************************************************************SFTDCLHG******************************************************************************************************************LTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNH*********************************************************************************LV**F******
Disordered Region (DISEMBL)
*********YHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSPYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSA********************************************************************PRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMRPTFPQEFLLSQFLPSANNNQGVNIPSSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP
Disordered Region (DISPRO)
*******SSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYM*********************VSFT*CLHGNSMDY******************************************************************************************************REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQH****************************************************************************DYGLLQDLVPSFI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNNEKKSSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSPYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNNNPSTPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEKKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMRPTFPQEFLLSQFLPSANNNQGVNIPSSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q8VWJ2	318	Probable WRKY transcripti	yes	no	0.815	0.877	0.445	1e-52
Q93WV4	282	Probable WRKY transcripti	no	no	0.719	0.872	0.421	7e-45
Q9FL26	326	Probable WRKY transcripti	no	no	0.713	0.748	0.420	5e-42
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.467	0.401	0.477	1e-36
O22900	337	Probable WRKY transcripti	no	no	0.502	0.510	0.446	4e-36
Q9C983	287	Probable WRKY transcripti	no	no	0.271	0.324	0.697	4e-35
Q93WV6	277	Probable WRKY transcripti	no	no	0.464	0.574	0.401	5e-31
Q9C5T3	309	Probable WRKY transcripti	no	no	0.394	0.436	0.456	6e-29
Q9SVB7	304	Probable WRKY transcripti	no	no	0.245	0.276	0.678	9e-29
Q93WY4	218	Probable WRKY transcripti	no	no	0.239	0.376	0.682	3e-28

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/319 (44%), Positives = 185/319 (57%), Gaps = 40/319 (12%)

Query: 35  NPSMYMNPPTPAVENLQAAAFDPTSPYVSFTDCLHGNSMDYTSL-SRAFDISCSSSEIIT 93
           NPS Y N P+          F+P++   SFTDCL  +   Y SL  + F +S SSSE+  
Sbjct: 29  NPSSYGNLPS-------QNGFNPST--YSFTDCLQSSPAAYESLLQKTFGLSPSSSEVFN 79

Query: 94  PPVDDTPKKTTAFAGDSAGATENNNNPSTPNSSVSSSSNEAGADEDSGNHSNKKDKQQVK 153
             +D  P +       + GA        +P++S SS ++  G  EDSG       K + K
Sbjct: 80  SSIDQEPNRDVTNDVINGGACNETETRVSPSNSSSSEADHPG--EDSG-------KSRRK 130

Query: 154 GQEDGDDDEKSKNKVNKPKKE--KKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSP 211
            +  G++D+ SK KV K KK   KKQREPR +F+TKSE+DHLEDGYRWRKYGQKAVKNSP
Sbjct: 131 RELVGEEDQISK-KVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSP 189

Query: 212 YPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGNAAGMLSPS--LL 269
           YPRSYYRCT+QKC VKKRVERS+QDPTVVITTYEGQHNH  P  LRG++A     S  L+
Sbjct: 190 YPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGSSAAAAMFSADLM 249

Query: 270 ASASMRPTFPQEFLLSQFLPSANNNQGVNIPSSMY------YQNLNISPQQQQQQLGNQV 323
                    P+ F    F  +A  N G    +  Y      Y ++N +P     Q+ +Q 
Sbjct: 250 T--------PRSFAHDMFRTAAYTNGGSVAAALDYGYGQSGYGSVNSNP--SSHQVYHQG 299

Query: 324 PDYGLLQDLVPSFINRQQP 342
            +Y LL+++ PS   +Q+P
Sbjct: 300 GEYELLREIFPSIFFKQEP 318

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  181 bits (459), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/299 (42%), Positives = 168/299 (56%), Gaps = 53/299 (17%)

Query: 61  YVSFTDCLHGN-SMDYTSLSRAFDISCSSS--EIITPPVDDTPKKTTAFAGDSAGATENN 117
           + S +DCL  +  MDY SL + F  S  SS  + ++P V                     
Sbjct: 18  FKSLSDCLQSSLVMDYNSLEKVFKFSPYSSPFQSVSPSV--------------------- 56

Query: 118 NNPSTPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKE--- 174
           NNP    +S S   + +  + +   ++N K  Q        +D+E   + V +  K+   
Sbjct: 57  NNPYLNLTSNSPVVSSSSNEGEPKENTNDKSDQM-------EDNEGDLHGVGESSKQLTK 109

Query: 175 -------KKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVK 227
                  KK+RE R AF+TKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKC VK
Sbjct: 110 QGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVK 169

Query: 228 KRVERSYQDPTVVITTYEGQHNHQCPATLRGN-AAGMLSPSLLASASMRPTFP---QEFL 283
           KRVERS+QDP++VITTYEG+HNH  P+TLRG  AA  L        S+  +FP   Q+FL
Sbjct: 170 KRVERSFQDPSIVITTYEGKHNHPIPSTLRGTVAAEHLLVHRGGGGSLLHSFPRHHQDFL 229

Query: 284 LSQFLPSANNNQGVNIPSSMYYQNLNISPQQQQQQLGNQ-VPDYGLLQDLVPSFINRQQ 341
           + +  P+  N Q V    S+ Y++ + +         NQ V DYGLLQD+VPS  ++ +
Sbjct: 230 MMKHSPA--NYQSV---GSLSYEHGHGTSSYNFNN--NQPVVDYGLLQDIVPSMFSKNE 281

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL26|WRKY8_ARATH Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1

 Score =  171 bits (434), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/278 (42%), Positives = 165/278 (59%), Gaps = 34/278 (12%)

Query: 81  AFDISCSSSEIITPPVD-----------DTPKKTTAFAGDSAGATENNNNPSTPNSSVSS 129
            F++S SSS+   P +D           ++ +K+    GD     ++          VS+
Sbjct: 67  GFELSPSSSDFFNPSLDQENGLYNAYNYNSSQKSHEVVGDGCATIKSE-------VRVSA 119

Query: 130 SSNEAGADEDSGNHSNK-KDKQQVKGQEDGDDDEKSKNKVNKPKKEKKQREPRFAFLTKS 188
           S + + AD   G  S K + K++V+  + G+DD++S+  V   KKE+K++EPR +F+TK+
Sbjct: 120 SPSSSEADHHPGEDSGKIRKKREVR--DGGEDDQRSQKVVKTKKKEEKKKEPRVSFMTKT 177

Query: 189 EIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQH 248
           E+DHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKC VKKRVERSYQDPTVVITTYE QH
Sbjct: 178 EVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQH 237

Query: 249 NHQCPATLRGNAAGMLSPSLLA--SASMRPTFPQEFLLSQFLPSANNNQGVNIPSSMYYQ 306
           NH  P   R     M S +  +  + S  P F    L+     S +N+    +P    Y 
Sbjct: 238 NHPIPTNRR---TAMFSGTTASDYNPSSSPIFSD--LIINTPRSFSNDDLFRVP----YA 288

Query: 307 NLNISPQQQQQQLGNQV--PDYGLLQDLVPSFINRQQP 342
           ++N++P   QQQ G      ++ LL+++ PS   +Q+P
Sbjct: 289 SVNVNPSYHQQQHGFHQQESEFELLKEMFPSVFFKQEP 326

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 110/180 (61%), Gaps = 20/180 (11%)

Query: 178 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDP 237
           RE RFAFLTKS+ID+L+DGYRWRKYGQKAVKNSPYPRSYYRCT+  C VKKRVERS  DP
Sbjct: 205 REARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDP 264

Query: 238 TVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASM----RPTFPQ-EFLLSQFLPSAN 292
           ++V+TTYEGQH H  P T RG+   + SP L   A+       + PQ  +LL+Q     N
Sbjct: 265 SIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHGATTASSSSFSIPQPRYLLTQHHQPYN 324

Query: 293 --NNQGVNIPSSMYYQNLNISP-------------QQQQQQLGNQVPDYGLLQDLVPSFI 337
             NN  +++ +        ++P              Q      + + D+GLLQD++PS I
Sbjct: 325 MYNNNSLSMINRRSSDGTFVNPGPSSSFPGFGYDMSQASTSTSSSIRDHGLLQDILPSQI 384

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 109/188 (57%), Gaps = 16/188 (8%)

Query: 170 KPKKEKKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKR 229
           K   +K+QRE R AF+TKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKR
Sbjct: 150 KKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKR 209

Query: 230 VERSYQDPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMR------PTFPQEFL 283
           VERS++DP+ V+TTYEGQH H  P T R  + G    S  A++S+       P      +
Sbjct: 210 VERSFRDPSTVVTTYEGQHTHISPLTSRPISTGGFFGSSGAASSLGNGCFGFPIDGSTLI 269

Query: 284 LSQFLPSANNNQGVNIPSSM-YYQNLNISPQQQQQQLGNQ---------VPDYGLLQDLV 333
             QF      +        M  +  +N        + G+          V D GLLQD+V
Sbjct: 270 SPQFQQLVQYHHQQQQQELMSCFGGVNEYLNSHANEYGDDNRVKKSRVLVKDNGLLQDVV 329

Query: 334 PSFINRQQ 341
           PS + +++
Sbjct: 330 PSHMLKEE 337

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 81/96 (84%), Gaps = 3/96 (3%)

Query: 170 KPKKEKKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKR 229
           K K +K+ R+PRFAF+TKS++D+LEDGYRWRKYGQKAVKNSP+PRSYYRCT+ +CTVKKR
Sbjct: 123 KKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKR 182

Query: 230 VERSYQDPTVVITTYEGQHNHQCPATLRGNAAGMLS 265
           VERS  DP++VITTYEGQH HQ     RG   G+L+
Sbjct: 183 VERSSDDPSIVITTYEGQHCHQTIGFPRG---GILT 215

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV6|WRK68_ARATH Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1

 Score =  135 bits (340), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 33/192 (17%)

Query: 172 KKEKKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVE 231
           +K+ K++ P+ +F+T+SE+ HL+DGY+WRKYGQK VK+SP+PR+YYRCT+  C VKKRVE
Sbjct: 96  RKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVE 155

Query: 232 RSYQDPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASM-RPTFPQEFLLSQFLPS 290
           RS+ DP+ VITTYEGQH H  P  +        S    + A +  PT P + L       
Sbjct: 156 RSFSDPSSVITTYEGQHTHPRPLLIMPKEGSSPSNGSASRAHIGLPTLPPQLL------- 208

Query: 291 ANNNQGVNIPSSMYYQNLNISPQQQQQQL---------------------GNQVPDYGLL 329
             NNQ    PSS   + +N    +Q++ +                        V D+GLL
Sbjct: 209 DYNNQQQQAPSSFGTEYIN----RQEKGINHDDDDDHVVKKSRTRDLLDGAGLVKDHGLL 264

Query: 330 QDLVPSFINRQQ 341
           QD+VPS I +++
Sbjct: 265 QDVVPSHIIKEE 276

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 93/149 (62%), Gaps = 14/149 (9%)

Query: 116 NNNNPSTPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEK 175
           ++N+P  P S+  SSS    A ++S N           G++ G+D+ ++K    + K+E+
Sbjct: 170 SHNHPK-PQSTKRSSSTAIAAHQNSSNGD---------GKDIGEDETEAK----RWKREE 215

Query: 176 KQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQ 235
             +EPR    T S+ID L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER++Q
Sbjct: 216 NVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQ 275

Query: 236 DPTVVITTYEGQHNHQCPATLRGNAAGML 264
           DP  VITTYEG+H HQ P   RG    +L
Sbjct: 276 DPKSVITTYEGKHKHQIPTPRRGPVLRLL 304

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  127 bits (320), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 65/84 (77%)

Query: 167 KVNKPKKEKKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTV 226
           K+ K K  +K REPRF F T SE+D L+DGYRWRKYGQK VKN+ +PRSYYRCT  KC V
Sbjct: 196 KMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRV 255

Query: 227 KKRVERSYQDPTVVITTYEGQHNH 250
           KKRVER   DP +VITTYEG+H H
Sbjct: 256 KKRVERLADDPRMVITTYEGRHLH 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 65/82 (79%)

Query: 169 NKPKKEKKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKK 228
           NK K  +K REPRF F TKS++D L+DGY+WRKYGQK VKNS +PRSYYRCT   C VKK
Sbjct: 120 NKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKK 179

Query: 229 RVERSYQDPTVVITTYEGQHNH 250
           RVER  +D  +VITTYEG+HNH
Sbjct: 180 RVERLSEDCRMVITTYEGRHNH 201

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
225446835	311	PREDICTED: probable WRKY transcription f	0.909	1.0	0.573	7e-88
388324557	311	WRKY71 [Vitis amurensis]	0.909	1.0	0.567	4e-87
224082564	322	predicted protein [Populus trichocarpa]	0.926	0.984	0.604	1e-86
224066567	325	predicted protein [Populus trichocarpa]	0.929	0.978	0.618	1e-84
147791794	339	hypothetical protein VITISV_042733 [Viti	0.915	0.923	0.545	2e-75
225463412	319	PREDICTED: probable WRKY transcription f	0.915	0.981	0.545	2e-75
255557405	310	WRKY transcription factor, putative [Ric	0.801	0.883	0.592	4e-73
356553607	335	PREDICTED: probable WRKY transcription f	0.921	0.940	0.598	8e-73
449444248	297	PREDICTED: probable WRKY transcription f	0.827	0.952	0.538	2e-71
449519541	297	PREDICTED: probable WRKY transcription f	0.827	0.952	0.538	5e-71

>gi|225446835|ref|XP_002283603.1| PREDICTED: probable WRKY transcription factor 28 [Vitis vinifera] gi|302143547|emb|CBI22108.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (846), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 196/342 (57%), Positives = 245/342 (71%), Gaps = 31/342 (9%)

Query: 1   MSNNEKKSSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSP 60
           MS+  + + YH +DPF  + +  +  GF FF +  P+++    TP+ + L A   DP+  
Sbjct: 1   MSDENRSTPYH-HDPFCHDQNRVSGAGFPFFCEK-PAIFNQGVTPSPQGLHAT--DPS-- 54

Query: 61  YVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNNNP 120
           Y++FTD LHG S+DY +LS+AFD+SCSSSE+I+P VD+          DS   T ++ +P
Sbjct: 55  YMTFTDYLHG-SLDYNTLSKAFDMSCSSSEVISP-VDN----------DSGKGTASHEHP 102

Query: 121 STPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEKKQREP 180
           STPNS  +SSS EA   EDSG   +K D Q   G EDGD++ K  NK  K K EK+ +EP
Sbjct: 103 STPNSLDTSSSTEA-ITEDSGKSKHKPDLQG-GGCEDGDENSKKANKSKK-KGEKRPKEP 159

Query: 181 RFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVV 240
           RFAF+TKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKCTVKKRVERS+QDP++V
Sbjct: 160 RFAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIV 219

Query: 241 ITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMRPTFPQEFLLSQFLPSANNNQGVNIP 300
           ITTYEGQHNH CPAT+RGNAA ML  S  +SA++  +FPQEF L+Q LP  NN  G   P
Sbjct: 220 ITTYEGQHNHPCPATIRGNAAAMLPTSFFSSATVGSSFPQEF-LTQMLP-PNNQSG---P 274

Query: 301 SSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP 342
           +SMYY   NI+P  QQQ    Q+PDYGLLQD+VPSFI +Q+P
Sbjct: 275 NSMYYH--NITPHHQQQ---FQLPDYGLLQDIVPSFIRKQEP 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388324557|gb|AFK27602.1| WRKY71 [Vitis amurensis]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 194/342 (56%), Positives = 244/342 (71%), Gaps = 31/342 (9%)

Query: 1   MSNNEKKSSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSP 60
           MS+  + + YH +DPF  + +  +  GF FF +  P+++    TP+ + L A   DP+  
Sbjct: 1   MSDENRSTPYH-HDPFCHDQNRVSGAGFPFFCEK-PAIFNQGVTPSPQGLHAT--DPS-- 54

Query: 61  YVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNNNP 120
           Y++FTD  HG S+DY +LS+AFD+SCSSSE+I+P VD+          DS   T ++ +P
Sbjct: 55  YMTFTDYFHG-SLDYNTLSKAFDMSCSSSEVISP-VDN----------DSGKGTASHEHP 102

Query: 121 STPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEKKQREP 180
           STPNS  +SSS EA   EDSG   +K D Q   G EDGD++ K  NK  K K EK+ +EP
Sbjct: 103 STPNSLDTSSSTEA-VTEDSGKSKHKPDLQG-GGCEDGDENSKKANKSKK-KGEKRPKEP 159

Query: 181 RFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVV 240
           RFAF+TKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKCTVKKRVERS+QDP++V
Sbjct: 160 RFAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIV 219

Query: 241 ITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMRPTFPQEFLLSQFLPSANNNQGVNIP 300
           ITTYEGQHNH CPAT+RGNAA ML  S  +SA++  +FPQEF L+Q LP  NN  G   P
Sbjct: 220 ITTYEGQHNHPCPATIRGNAAAMLPTSFFSSATVGSSFPQEF-LTQMLP-PNNQSG---P 274

Query: 301 SSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP 342
           +SMYY   NI+P  QQQ    Q+PD+GLLQD+VPSFI +Q+P
Sbjct: 275 NSMYYH--NITPHHQQQ---FQLPDHGLLQDIVPSFIRKQEP 311

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082564|ref|XP_002306743.1| predicted protein [Populus trichocarpa] gi|222856192|gb|EEE93739.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 208/344 (60%), Positives = 245/344 (71%), Gaps = 27/344 (7%)

Query: 3   NNEKKSSYHFYDPFDCN-PHGFNR--LGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTS 59
           +NEK+  YH YDPF  N   G NR    F FF DN  SMY N   P  +NLQ  + DP+ 
Sbjct: 2   SNEKEDPYH-YDPFHYNIQQGANRPVSVFPFFNDNL-SMY-NQQAP-TQNLQGFS-DPS- 55

Query: 60  PYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNNN 119
            ++SFTDCLHG+   Y +LSRA D+SCSSSE+I+P   D  +K  A  G+SA    N   
Sbjct: 56  -FMSFTDCLHGSMDHYNTLSRALDVSCSSSEVISPVDQDGSRKIGA--GESAAT--NQYT 110

Query: 120 PSTPNSSVSSSSNEAGA-DEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEKKQR 178
           PSTPNSSVS+SS+  GA +ED G   +KK KQ  +  EDGD D  +K      KKEK+Q+
Sbjct: 111 PSTPNSSVSNSSSNDGATEEDPGK--SKKHKQPKESTEDGDIDGDAKKVSKTKKKEKRQK 168

Query: 179 EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPT 238
           EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKC VKKRVERS+QDP+
Sbjct: 169 EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCMVKKRVERSFQDPS 228

Query: 239 VVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMRPTFPQEFLLSQFLPSANNNQGVN 298
           +VITTYEGQHNH CPATLRGNAAGMLSPSLLAS S+  +FPQ+FL     PS   +Q   
Sbjct: 229 IVITTYEGQHNHHCPATLRGNAAGMLSPSLLASTSIGQSFPQDFLTRLLPPSNQGDQ--- 285

Query: 299 IPSSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP 342
             +S++YQN +  PQ Q Q      PDYGLLQDLVPSFI+++QP
Sbjct: 286 --TSIFYQNHD--PQYQHQLY---APDYGLLQDLVPSFIHKKQP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066567|ref|XP_002302140.1| predicted protein [Populus trichocarpa] gi|222843866|gb|EEE81413.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 214/346 (61%), Positives = 255/346 (73%), Gaps = 28/346 (8%)

Query: 3   NNEKKSSYHFYDPFDCN-PHGFNR--LGFNFFQDNNPSMY-MNPPTPAVENLQAAAFDPT 58
           +NEK+  Y+ YDPF  N  H  NR    F FF DNN S+Y    PT +++       DP 
Sbjct: 2   SNEKEDPYN-YDPFYYNIQHRTNRPVSVFPFFNDNNLSVYNQQAPTQSLQGFD----DP- 55

Query: 59  SPYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNN 118
            PY+SFTDCLHG+   Y +LSRA ++SCSSSE+I+P ++D  KKT A  G+ + AT N N
Sbjct: 56  -PYMSFTDCLHGSVDHYNTLSRALNVSCSSSEVISP-IEDGSKKTGA--GELSAAT-NEN 110

Query: 119 NPSTPNSSVSSSSNEAGA-DEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEKKQ 177
            PSTPNSS+S+SS+  GA +EDSG    KKDKQ  K  EDGD D  +K      KKEK+Q
Sbjct: 111 LPSTPNSSISNSSSNDGATEEDSGK--IKKDKQP-KESEDGDGD--AKKVSKTKKKEKRQ 165

Query: 178 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDP 237
           +EPRFAFLTKSEID+LEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERS+QDP
Sbjct: 166 KEPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSFQDP 225

Query: 238 TVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMRPTFPQEFLLSQFLPSANNNQGV 297
           ++VITTYEGQHNH CPATLRGNA GML PSLLAS S+  +FPQ+ LL++ LP A+N QG 
Sbjct: 226 SLVITTYEGQHNHHCPATLRGNATGMLPPSLLASTSIGQSFPQD-LLTRLLP-ASNQQGD 283

Query: 298 NIPSSMYYQNLNISPQQQQQQLGNQV-PDYGLLQDLVPSFINRQQP 342
              +SM+Y +L  +PQ QQ Q      PDYGLLQDLVPSFI++QQP
Sbjct: 284 Q--TSMFYHSL--APQNQQLQQHQLYSPDYGLLQDLVPSFIHKQQP 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791794|emb|CAN72742.1| hypothetical protein VITISV_042733 [Vitis vinifera]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 190/348 (54%), Positives = 223/348 (64%), Gaps = 35/348 (10%)

Query: 1   MSNNEKKSSYHFYDPFDCNPHGF-NRLGFNFFQDNNP----SMYMNPPTPAVENLQAAAF 55
           MS+  +   YH  DPF  + HG     GF+F   N+     SM   P  P   NLQ   F
Sbjct: 21  MSDEPRDLYYH--DPFHDDRHGIIGNTGFSFSAINDSKADSSMRAAPSPP---NLQG--F 73

Query: 56  DPTSPYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATE 115
           DP  PY+SFTDCL+G S+DY SL+ AF +S SSSE  +P   +   K  A  GD   + E
Sbjct: 74  DP--PYMSFTDCLNG-SLDYNSLTTAFGLSPSSSEAFSPVEGN--HKPVANLGDLGASGE 128

Query: 116 NNNNPSTPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEK 175
                 TPNSS+SSSS EAGA+EDS    +KKD+Q    + DG D  K  NK  K K EK
Sbjct: 129 IAG---TPNSSISSSSTEAGAEEDSSK--SKKDRQAKVSELDGGDGSKKVNKPKK-KAEK 182

Query: 176 KQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQ 235
           +QREPRFAF+TKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCT+QKCTVKKRVERS+Q
Sbjct: 183 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQ 242

Query: 236 DPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASM-RPTFPQEFLLSQFLPSANNN 294
           DP+ VITTYEGQHNHQ P TLRGNA GML PS+L    M  P FPQE       P  N  
Sbjct: 243 DPSTVITTYEGQHNHQIPVTLRGNAGGMLPPSVLTPGQMGGPGFPQELFFQMASPMNN-- 300

Query: 295 QGVNIPSSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP 342
             ++   S Y Q L  +P QQ      Q  DYGLLQD+VPS I++Q+P
Sbjct: 301 --LSAAGSFYPQGL--TPFQQL-----QFHDYGLLQDVVPSMIHKQEP 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463412|ref|XP_002272089.1| PREDICTED: probable WRKY transcription factor 28 [Vitis vinifera] gi|297740645|emb|CBI30827.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 190/348 (54%), Positives = 223/348 (64%), Gaps = 35/348 (10%)

Query: 1   MSNNEKKSSYHFYDPFDCNPHGF-NRLGFNFFQDNNP----SMYMNPPTPAVENLQAAAF 55
           MS+  +   YH  DPF  + HG     GF+F   N+     SM   P  P   NLQ   F
Sbjct: 1   MSDEPRDLYYH--DPFHDDRHGIIGNTGFSFSAINDSKADSSMRAAPSPP---NLQG--F 53

Query: 56  DPTSPYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATE 115
           DP  PY+SFTDCL+G S+DY SL+ AF +S SSSE  +P   +   K  A  GD   + E
Sbjct: 54  DP--PYMSFTDCLNG-SLDYNSLTTAFGLSPSSSEAFSPVEGN--HKPVANLGDLGASGE 108

Query: 116 NNNNPSTPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEK 175
                 TPNSS+SSSS EAGA+EDS    +KKD+Q    + DG D  K  NK  K K EK
Sbjct: 109 IAG---TPNSSISSSSTEAGAEEDSSK--SKKDRQAKVSELDGGDGSKKVNKPKK-KAEK 162

Query: 176 KQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQ 235
           +QREPRFAF+TKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCT+QKCTVKKRVERS+Q
Sbjct: 163 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQ 222

Query: 236 DPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASM-RPTFPQEFLLSQFLPSANNN 294
           DP+ VITTYEGQHNHQ P TLRGNA GML PS+L    M  P FPQE       P  N  
Sbjct: 223 DPSTVITTYEGQHNHQIPVTLRGNAGGMLPPSVLTPGQMGGPGFPQELFFQMASPMNN-- 280

Query: 295 QGVNIPSSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP 342
             ++   S Y Q L  +P QQ      Q  DYGLLQD+VPS I++Q+P
Sbjct: 281 --LSAAGSFYPQGL--TPFQQL-----QFHDYGLLQDVVPSMIHKQEP 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557405|ref|XP_002519733.1| WRKY transcription factor, putative [Ricinus communis] gi|223541150|gb|EEF42706.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 173/292 (59%), Positives = 207/292 (70%), Gaps = 18/292 (6%)

Query: 54  AFDPTSPYVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGA 113
             DP+S ++SFT+CLHG SMDY SLS+AF +S SSSE+I+  ++  PK      GD    
Sbjct: 34  GLDPSS-FLSFTECLHG-SMDYNSLSKAFGMSPSSSEVISS-MEGNPKPLEI--GDLGSG 88

Query: 114 TENNNNPSTPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKK 173
             N+ NP TPNSS S SS+EAG +EDSG  + KK  Q  KG EDG+  +K      K   
Sbjct: 89  GGNSENPVTPNSSASFSSSEAGGEEDSGKTATKKGNQP-KGSEDGECSKKDGKTKKK--G 145

Query: 174 EKKQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERS 233
           EK+QREPRFAF+TKSE+DHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKCTVKKRVERS
Sbjct: 146 EKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERS 205

Query: 234 YQDPTVVITTYEGQHNHQCPATLRGNAAGMLSPSLLASAS---MRPTFPQEFLLSQFLPS 290
           +QDP++VITTYEGQHNH  PATLRGNAA M S S+L  A+    RPTFPQE L+   LP 
Sbjct: 206 FQDPSIVITTYEGQHNHPIPATLRGNAAAMFSHSMLTPANPMVTRPTFPQEILVQ--LPH 263

Query: 291 ANNNQGVNIPSSMYYQNLNISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP 342
            +N  G     S+Y Q++N      Q    +QVPDYGLLQD+VPS   +Q+P
Sbjct: 264 LSNQAGTG---SIYQQSVNHQHHLHQYH--HQVPDYGLLQDIVPSMFFKQEP 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553607|ref|XP_003545146.1| PREDICTED: probable WRKY transcription factor 28-like [Glycine max]

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 206/344 (59%), Positives = 238/344 (69%), Gaps = 29/344 (8%)

Query: 12  FYDPFDCNPHGFNRL-----GFNFFQDNNPSMYMNPPTPAVENLQAAAFD----PTSPY- 61
           FYDPF  N H   +L      F FF+DNN     N   P    L    FD    P+S + 
Sbjct: 8   FYDPFHYNHHHDQQLNHSSSSFPFFRDNN-----NNSAPIGSQLNFQGFDDHNNPSSHHH 62

Query: 62  VSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNNNPS 121
            +FTDCLHG SMDY +LSRAFD+SCSSSE+I+  + + PKK +A  GDS G +   N  S
Sbjct: 63  TTFTDCLHG-SMDYNTLSRAFDMSCSSSEVISSNIVENPKKPSA-GGDSVGVS--GNQQS 118

Query: 122 TPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSKNKVNKPKKEKKQREPR 181
           TPNSSVSSSSNEA A  +  +  ++KDKQ  KG E+GD  EKSK +    KKEKK REPR
Sbjct: 119 TPNSSVSSSSNEAEAIIEEDSTKSQKDKQP-KGCEEGD--EKSKKENKPKKKEKKPREPR 175

Query: 182 FAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVI 241
           F+FLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKC VKKRVERS+QDPT+VI
Sbjct: 176 FSFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCGVKKRVERSFQDPTIVI 235

Query: 242 TTYEGQHNHQCPATLRGNAAGML-SPSLLASASMRPTFPQEFLLSQFLPSANNNQGVNIP 300
           TTYEGQHNH CPATLRG+AA ML SPS   S+ M  + PQ+F L+Q LPS + N   N  
Sbjct: 236 TTYEGQHNHHCPATLRGSAASMLSSPSFFGSSYMASSLPQDF-LAQLLPSYSQNDHQN-- 292

Query: 301 SSMYYQNL--NISPQQQQQQLGNQVPDYGLLQDLVPSFINRQQP 342
             M+ QNL  N+ PQ QQQQ      DYGLLQDL+PSF  +Q P
Sbjct: 293 -PMFNQNLSHNLHPQPQQQQQFQLSRDYGLLQDLLPSFPGKQVP 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444248|ref|XP_004139887.1| PREDICTED: probable WRKY transcription factor 71-like [Cucumis sativus]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 184/342 (53%), Positives = 218/342 (63%), Gaps = 59/342 (17%)

Query: 1   MSNNEKKSSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSP 60
           MSN+E K+ Y  YDPF  N    NR  F+                      AAA DP   
Sbjct: 1   MSNDEGKNVYQQYDPFQYNQLDMNRSIFH-------------------QQAAAALDPG-- 39

Query: 61  YVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNNNP 120
            +SFT+    +S++Y SLS+AFD+SC SS++I+  VDD  KK  +               
Sbjct: 40  LMSFTNFFDTSSLEYNSLSKAFDVSCCSSQVISA-VDDVSKKKAS--------------T 84

Query: 121 STPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSK--NKVNKPKKEKKQR 178
           +TPNSSVSSSSNEA  +EDS   +  +D   +KG+ +  D+EKSK  N     KKEK+ R
Sbjct: 85  TTPNSSVSSSSNEAAVEEDSVKSNKLED---IKGRCENKDEEKSKKQNSNLSKKKEKRPR 141

Query: 179 EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPT 238
           EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKC VKKRVERSYQDP+
Sbjct: 142 EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPS 201

Query: 239 VVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMR-------PTFPQEFLLSQFLPSA 291
           VVITTYEGQHNH CPATLRG++AG++S    ASAS         PT PQE L S  LP+ 
Sbjct: 202 VVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASASVTAASSGPTLPQE-LFSHLLPT- 259

Query: 292 NNNQGVNIPSSMYYQNLNISPQQQQQQLGNQVPD-YGLLQDL 332
            NN   +  +SM YQNL++     QQ L  Q+PD YGLLQDL
Sbjct: 260 -NNCQTDPAASMMYQNLSL-----QQHL--QLPDHYGLLQDL 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519541|ref|XP_004166793.1| PREDICTED: probable WRKY transcription factor 71-like [Cucumis sativus]

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 184/342 (53%), Positives = 218/342 (63%), Gaps = 59/342 (17%)

Query: 1   MSNNEKKSSYHFYDPFDCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSP 60
           MSN+E K+ Y  YDPF  N    NR  F+                      AAA DP   
Sbjct: 1   MSNDEGKNVYQQYDPFQYNQLDMNRSIFH-------------------QQAAAALDPG-- 39

Query: 61  YVSFTDCLHGNSMDYTSLSRAFDISCSSSEIITPPVDDTPKKTTAFAGDSAGATENNNNP 120
            +SFT+    +S++Y SLS+AFD+SC SS++I+  VDD  KK  +               
Sbjct: 40  LMSFTNFFDTSSLEYNSLSKAFDVSCCSSQVISA-VDDVSKKKAS--------------T 84

Query: 121 STPNSSVSSSSNEAGADEDSGNHSNKKDKQQVKGQEDGDDDEKSK--NKVNKPKKEKKQR 178
           +TPNSSVSSSSNEA  +EDS   +  +D   +KG+ +  D+EKSK  N     KKEK+ R
Sbjct: 85  TTPNSSVSSSSNEAVVEEDSVKSNKLED---IKGRCENKDEEKSKKQNSNLSKKKEKRPR 141

Query: 179 EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPT 238
           EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKC VKKRVERSYQDP+
Sbjct: 142 EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPS 201

Query: 239 VVITTYEGQHNHQCPATLRGNAAGMLSPSLLASASMR-------PTFPQEFLLSQFLPSA 291
           VVITTYEGQHNH CPATLRG++AG++S    ASAS         PT PQE L S  LP+ 
Sbjct: 202 VVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASASVTAASSGPTLPQE-LFSHLLPT- 259

Query: 292 NNNQGVNIPSSMYYQNLNISPQQQQQQLGNQVPD-YGLLQDL 332
            NN   +  +SM YQNL++     QQ L  Q+PD YGLLQDL
Sbjct: 260 -NNCQTDPAASMMYQNLSL-----QQHL--QLPDHYGLLQDL 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.830	0.893	0.398	1.2e-47
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.751	0.911	0.392	8.4e-42
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.365	0.313	0.559	8.7e-42
TAIR|locus:2170403	326	WRKY8 "WRKY DNA-binding protei	0.915	0.960	0.342	2.2e-41
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.362	0.367	0.531	1e-36
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.438	0.522	0.474	3.2e-33
TAIR|locus:2096019	277	WRKY68 [Arabidopsis thaliana (	0.599	0.740	0.347	7.9e-30
TAIR|locus:2122496	304	WRKY13 "WRKY DNA-binding prote	0.213	0.240	0.726	2.9e-29
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.236	0.262	0.629	1.7e-27
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.435	0.289	0.386	6.9e-27

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 126/316 (39%), Positives = 159/316 (50%)

Query:    34 NNPSMYMNPPTPAVENLQAAAFDPTSPYVSFTDCLHGNSMDYTSL-SRAFDISCSSSEII 92
             +NPS Y N P+   +N     F+P S Y SFTDCL  +   Y SL  + F +S SSSE+ 
Sbjct:    28 SNPSSYGNLPS---QN----GFNP-STY-SFTDCLQSSPAAYESLLQKTFGLSPSSSEVF 78

Query:    93 XXXXXXXXXXXXAFAGDSAGATEXXXXXXXXXXXXXXXXXEAGADEDSGNHSNKKDKQQV 152
                              + GA                     G  EDSG     + K+++
Sbjct:    79 NSSIDQEPNRDVTNDVINGGACNETETRVSPSNSSSSEADHPG--EDSGK---SRRKREL 133

Query:   153 KGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPY 212
              G+ED                   QREPR +F+TKSE+DHLEDGYRWRKYGQKAVKNSPY
Sbjct:   134 VGEED---QISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPY 190

Query:   213 PRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATLRGNXXXXXXXXXXXXX 272
             PRSYYRCT+QKC VKKRVERS+QDPTVVITTYEGQHNH  P  LRG+             
Sbjct:   191 PRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGSSAAAAMFSADLMT 250

Query:   273 XMRPTFPQEFLLSQFLPSANNNQGVNIPSSMY------YQNLNISPXXXXXXLGNQVPDY 326
                   P+ F    F  +A  N G    +  Y      Y ++N +P        +Q  +Y
Sbjct:   251 ------PRSFAHDMFRTAAYTNGGSVAAALDYGYGQSGYGSVNSNPSSHQVY--HQGGEY 302

Query:   327 GLLQDLVPSFINRQQP 342
              LL+++ PS   +Q+P
Sbjct:   303 ELLREIFPSIFFKQEP 318

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 113/288 (39%), Positives = 148/288 (51%)

Query:    61 YVSFTDCLHGNS-MDYTSLSRAFDISCSSSEIIXXXXXXXXXXXXAFAGDSAGATEXXXX 119
             + S +DCL  +  MDY SL + F  S  SS                F   S         
Sbjct:    18 FKSLSDCLQSSLVMDYNSLEKVFKFSPYSSP---------------FQSVSPSVNNPYLN 62

Query:   120 XXXXXXXXXXXXXEAGADEDSGNHSNKKDKQQVKGQEDG-DDDXXXXXXXXXXXXXXXQR 178
                          E    E++ + S++ +  +  G   G  +                +R
Sbjct:    63 LTSNSPVVSSSSNEGEPKENTNDKSDQMEDNE--GDLHGVGESSKQLTKQGKKKGEKKER 120

Query:   179 EPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPT 238
             E R AF+TKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKC VKKRVERS+QDP+
Sbjct:   121 EVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPS 180

Query:   239 VVITTYEGQHNHQCPATLRGNXXXXXXXXXXXXX-XMRPTFP---QEFLLSQFLPSANNN 294
             +VITTYEG+HNH  P+TLRG                +  +FP   Q+FL+ +  P+  N 
Sbjct:   181 IVITTYEGKHNHPIPSTLRGTVAAEHLLVHRGGGGSLLHSFPRHHQDFLMMKHSPA--NY 238

Query:   295 QGVNIPSSMYYQNLNISPXXXXXXLGNQ-VPDYGLLQDLVPSFINRQQ 341
             Q V    S+ Y++ + +         NQ V DYGLLQD+VPS  ++ +
Sbjct:   239 QSVG---SLSYEHGHGTSSYNFN--NNQPVVDYGLLQDIVPSMFSKNE 281

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
 Identities = 71/127 (55%), Positives = 85/127 (66%)

Query:   133 EAGADEDSGNHSNKKDKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEIDH 192
             EA  D +SG     KD+++  G +  +                  RE RFAFLTKS+ID+
Sbjct:   162 EAANDNNSGKEVTVKDQEE--GDQQQEQKGTKPQLKAKKKNQKKAREARFAFLTKSDIDN 219

Query:   193 LEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQC 252
             L+DGYRWRKYGQKAVKNSPYPRSYYRCT+  C VKKRVERS  DP++V+TTYEGQH H  
Sbjct:   220 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPF 279

Query:   253 PATLRGN 259
             P T RG+
Sbjct:   280 PMTPRGH 286

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2170403 WRKY8 "WRKY DNA-binding protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 114/333 (34%), Positives = 157/333 (47%)

Query:    17 DCNPHGFNRLGFNFFQDNNPSMYMNPPTPAVENLQAAAFDPTSPYVSFTDCLHGNSMDYT 76
             D N + +    +N +  NN +M   P         A     +S  V F D    N     
Sbjct:     7 DLNNYHYTS-SYNHYNINNQNMINLPYVSGPSAYNANMI--SSSQVGF-DLPSKNLSPQG 62

Query:    77 SLSRAFDISCSSSEIIXXXXXXXXXXXXAFAGDSAGATEXXX----XXXXXXXXXXXXXX 132
             +    F++S SSS+              A+  +S+  +                      
Sbjct:    63 AFELGFELSPSSSDFFNPSLDQENGLYNAYNYNSSQKSHEVVGDGCATIKSEVRVSASPS 122

Query:   133 EAGADEDSGNHSNK-KDKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEID 191
              + AD   G  S K + K++V+  + G+DD               ++EPR +F+TK+E+D
Sbjct:   123 SSEADHHPGEDSGKIRKKREVR--DGGEDDQRSQKVVKTKKKEEKKKEPRVSFMTKTEVD 180

Query:   192 HLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQ 251
             HLEDGYRWRKYGQKAVKNSPYPRSYYRCT+QKC VKKRVERSYQDPTVVITTYE QHNH 
Sbjct:   181 HLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHP 240

Query:   252 CPATLRGNXXXXXXXXXXXXXXMRPTFPQEFLLSQFLPSANNNQGVNIPSSMYYQNLNIS 311
              P T R                  P F    L+     S +N+    +P    Y ++N++
Sbjct:   241 IP-TNRRTAMFSGTTASDYNPSSSPIFSD--LIINTPRSFSNDDLFRVP----YASVNVN 293

Query:   312 PXXXXXXLG--NQVPDYGLLQDLVPSFINRQQP 342
             P       G   Q  ++ LL+++ PS   +Q+P
Sbjct:   294 PSYHQQQHGFHQQESEFELLKEMFPSVFFKQEP 326

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEP

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 67/126 (53%), Positives = 83/126 (65%)

Query:   134 AGADEDSGNHSNKK--DKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEID 191
             + A  ++ N    K  D ++  G++  +                 QRE R AF+TKSE+D
Sbjct:   112 SSASSEALNEEKPKTEDNEEEGGEDQQEKSHTKKQLKAKKNNQKRQREARVAFMTKSEVD 171

Query:   192 HLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQ 251
             HLEDGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS++DP+ V+TTYEGQH H 
Sbjct:   172 HLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHI 231

Query:   252 CPATLR 257
              P T R
Sbjct:   232 SPLTSR 237

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 75/158 (47%), Positives = 94/158 (59%)

Query:   178 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDP 237
             R+PRFAF+TKS++D+LEDGYRWRKYGQKAVKNSP+PRSYYRCT+ +CTVKKRVERS  DP
Sbjct:   131 RQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDP 190

Query:   238 TVVITTYEGQHNHQCPATLRGNXXXXXX-XXXXXXXXMRPTFPQEFLLSQFLPSANNNQG 296
             ++VITTYEGQH HQ     RG                + P  P  +   + L   + +  
Sbjct:   191 SIVITTYEGQHCHQTIGFPRGGILTAHDPHSFTSHHHLPPPLPNPYYYQELLHQLHRDN- 249

Query:   297 VNIPSSMYYQNLNISPXXXXXXLGNQVPDYGLLQDLVP 334
              N PS    +     P        +   + GLL D+VP
Sbjct:   250 -NAPSPRLPR-----PTTEDTPAVSTPSEEGLLGDIVP 281

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2096019 WRKY68 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 75/216 (34%), Positives = 109/216 (50%)

Query:   137 DEDSGNHSNKKDKQQVKGQEDGDDDXXXXXXXXXXXXXXXQREPRFAFLTKSEIDHLEDG 196
             +  S    N  D+++  G+E                    ++ P+ +F+T+SE+ HL+DG
Sbjct:    61 NSSSSEAVNGDDEEEEDGEEQQHKTKKRFKFTKMSRKQTKKKVPKVSFITRSEVLHLDDG 120

Query:   197 YRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPATL 256
             Y+WRKYGQK VK+SP+PR+YYRCT+  C VKKRVERS+ DP+ VITTYEGQH H  P  +
Sbjct:   121 YKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLLI 180

Query:   257 RGNXXXXXXXXXXXXXXMR-PTFPQEFL----LSQFLPSANNNQGVNIPSSMYYQNLN-- 309
                              +  PT P + L      Q  PS+   + +N        + +  
Sbjct:   181 MPKEGSSPSNGSASRAHIGLPTLPPQLLDYNNQQQQAPSSFGTEYINRQEKGINHDDDDD 240

Query:   310 --ISPXXXXXXLGNQ--VPDYGLLQDLVPSFINRQQ 341
               +        L     V D+GLLQD+VPS I +++
Sbjct:   241 HVVKKSRTRDLLDGAGLVKDHGLLQDVVPSHIIKEE 276

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2122496 WRKY13 "WRKY DNA-binding protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 53/73 (72%), Positives = 59/73 (80%)

Query:   178 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDP 237
             REPRF F T SE+D L+DGYRWRKYGQK VKN+ +PRSYYRCT  KC VKKRVER   DP
Sbjct:   207 REPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDP 266

Query:   238 TVVITTYEGQHNH 250
              +VITTYEG+H H
Sbjct:   267 RMVITTYEGRHLH 279

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 51/81 (62%), Positives = 60/81 (74%)

Query:   178 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDP 237
             +EPR    T S+ID L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER++QDP
Sbjct:   218 KEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDP 277

Query:   238 TVVITTYEGQHNHQCPATLRG 258
               VITTYEG+H HQ P   RG
Sbjct:   278 KSVITTYEGKHKHQIPTPRRG 298

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 6.9e-27, Sum P(2) = 6.9e-27
 Identities = 58/150 (38%), Positives = 77/150 (51%)

Query:   106 FAGDSAGATEXXXXXXXXXXXXXXXXXEAGADEDSGN-HSNKKDKQQVKGQEDGDDDXXX 164
             F  +S+  T+                 EA   E+ GN  ++ ++K + +           
Sbjct:   320 FQTNSSNKTKREQHEAVSQATTTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVR 379

Query:   165 XXXXXXXXXXXXQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKC 224
                           EPR    T SE+D L+DGYRWRKYGQK VK +PYPRSYY+CT+  C
Sbjct:   380 ISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGC 439

Query:   225 TVKKRVERSYQDPTVVITTYEGQHNHQCPA 254
              V+K VER+  DP  V+TTYEG+HNH  PA
Sbjct:   440 GVRKHVERAATDPKAVVTTYEGKHNHDLPA 469

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWJ2	WRK28_ARATH	No assigned EC number	0.4451	0.8157	0.8773	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00051099 hypothetical protein (322 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	9e-36
smart00774	59	smart00774, WRKY, DNA binding domain	3e-35

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  123 bits (312), Expect = 9e-36
 Identities = 42/60 (70%), Positives = 47/60 (78%)

Query: 193 LEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQC 252
           L+DGY WRKYGQK VK SP+PRSYYRCTS  C VKK+VERS  DP +V  TYEG+HNH  
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  122 bits (308), Expect = 3e-35
 Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 193 LEDGYRWRKYGQKAVKNSPYPRSYYRCTS-QKCTVKKRVERSYQDPTVVITTYEGQHNH 250
           L+DGY+WRKYGQK +K SPYPRSYYRCT  Q C  KK+V+RS  DP+VV  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	87.95
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	80.4

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=2.3e-31  Score=201.70  Aligned_cols=60  Identities=68%  Similarity=1.291  Sum_probs=52.6

Q ss_pred             CCccchhhccCcccccCCCCCCcceeeccccchhhhhhhhhcCCCcEEEEEeCCCccCCC
Q 019375          193 LEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQC  252 (342)
Q Consensus       193 ldDGY~WRKYGQK~IKgs~~PRsYYRCT~~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH~~  252 (342)
                      ++|||+|||||||.|+|+++||+||||+..+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999999999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=2.7e-30  Score=196.29  Aligned_cols=58  Identities=67%  Similarity=1.275  Sum_probs=56.5

Q ss_pred             CCccchhhccCcccccCCCCCCcceeecc-ccchhhhhhhhhcCCCcEEEEEeCCCccC
Q 019375          193 LEDGYRWRKYGQKAVKNSPYPRSYYRCTS-QKCTVKKRVERSYQDPTVVITTYEGQHNH  250 (342)
Q Consensus       193 ldDGY~WRKYGQK~IKgs~~PRsYYRCT~-~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH  250 (342)
                      ++|||+|||||||.|+|+++||+||||+. ++|+|+|+|||+.+|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.95  E-value=0.18  Score=36.02  Aligned_cols=48  Identities=27%  Similarity=0.612  Sum_probs=23.3

Q ss_pred             CCccchhhccCcccccCCCCCCcceeeccc---cchhhhhhhhhcCCCcEEEEEeCCCccC
Q 019375          193 LEDGYRWRKYGQKAVKNSPYPRSYYRCTSQ---KCTVKKRVERSYQDPTVVITTYEGQHNH  250 (342)
Q Consensus       193 ldDGY~WRKYGQK~IKgs~~PRsYYRCT~~---~C~AkKqVQrs~~Dpsi~~vTY~G~HnH  250 (342)
                      +-|||.-++....      ..+.|+||+..   +|.|+=.+.  .++ .. ++...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~~-~~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-GR-VVRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-TE-EEE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-CE-EEECCCccCC
Confidence            3688886655444      45689999963   899977666  223 33 3344489998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=80.40  E-value=0.63  Score=36.16  Aligned_cols=30  Identities=27%  Similarity=0.432  Sum_probs=25.4

Q ss_pred             ccchhhhhhhhhcCCCcEEEEEeCCCccCCC
Q 019375          222 QKCTVKKRVERSYQDPTVVITTYEGQHNHQC  252 (342)
Q Consensus       222 ~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH~~  252 (342)
                      .+|+|+=.|.+.. +....++.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            5899988887765 77888899999999985

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		4e-23
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-20

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 55/69 (79%)
Query: 186 TKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYE 245
           T SE+D L+DGYRWRKYGQK VK +PYPRSYY+CT+  C V+K VER+  DP  V+TTYE
Sbjct: 10  TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 69
Query: 246 GQHNHQCPA 254
           G+HNH  PA
Sbjct: 70  GKHNHDLPA 78

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 54/73 (73%)
Query: 181 RFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVV 240
           R    T++  D + DGYRWRKYGQK+VK SPYPRSYYRC+S  C VKK VERS  D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 241 ITTYEGQHNHQCP 253
           ITTYEG+H+H  P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-48
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-44

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  155 bits (394), Expect = 4e-48
 Identities = 46/77 (59%), Positives = 55/77 (71%)

Query: 178 REPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDP 237
                   T SE+D L+DGYRWRKYGQK VK +PYPRSYY+CT+  C V+K VER+  DP
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 238 TVVITTYEGQHNHQCPA 254
             V+TTYEG+HNH  PA
Sbjct: 62  KAVVTTYEGKHNHDLPA 78

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  145 bits (368), Expect = 3e-44
 Identities = 45/74 (60%), Positives = 54/74 (72%)

Query: 181 RFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVV 240
           R    T++  D + DGYRWRKYGQK+VK SPYPRSYYRC+S  C VKK VERS  D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 241 ITTYEGQHNHQCPA 254
           ITTYEG+H+H  P 
Sbjct: 62  ITTYEGKHDHDMPP 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=7.2e-35  Score=229.84  Aligned_cols=75  Identities=60%  Similarity=1.102  Sum_probs=72.5

Q ss_pred             cceEEEeccccCCCCccchhhccCcccccCCCCCCcceeeccccchhhhhhhhhcCCCcEEEEEeCCCccCCCCc
Q 019375          180 PRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPA  254 (342)
Q Consensus       180 prv~~~T~sevd~ldDGY~WRKYGQK~IKgs~~PRsYYRCT~~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH~~Ps  254 (342)
                      .||+|.|.+++++++|||+|||||||.|||+++||+|||||.++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999884

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.1e-34  Score=229.89  Aligned_cols=75  Identities=61%  Similarity=1.117  Sum_probs=69.4

Q ss_pred             cceEEEeccccCCCCccchhhccCcccccCCCCCCcceeeccccchhhhhhhhhcCCCcEEEEEeCCCccCCCCc
Q 019375          180 PRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPA  254 (342)
Q Consensus       180 prv~~~T~sevd~ldDGY~WRKYGQK~IKgs~~PRsYYRCT~~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH~~Ps  254 (342)
                      .+++|.|.+++++++|||+|||||||.|||+++||+|||||+++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999873

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-34

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  119 bits (299), Expect = 2e-34
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 186 TKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYE 245
           T SE+D L+DGYRWRKYGQK VK +PYPRSYY+CT+  C V+K VER+  DP  V+TTYE
Sbjct: 3   TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 62

Query: 246 GQHNHQCPA 254
           G+HNH  PA
Sbjct: 63  GKHNHDLPA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.9e-35  Score=225.35  Aligned_cols=71  Identities=65%  Similarity=1.199  Sum_probs=67.8

Q ss_pred             EEeccccCCCCccchhhccCcccccCCCCCCcceeeccccchhhhhhhhhcCCCcEEEEEeCCCccCCCCc
Q 019375          184 FLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQCPA  254 (342)
Q Consensus       184 ~~T~sevd~ldDGY~WRKYGQK~IKgs~~PRsYYRCT~~~C~AkKqVQrs~~Dpsi~~vTY~G~HnH~~Ps  254 (342)
                      |.|.+++++++|||+|||||||.|+|+++||+||||+.++|+|+|+|||+.+||.+++|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            35778999999999999999999999999999999999999999999999999999999999999999884