Citrus Sinensis ID: 019391

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGKSLTMSWCRPQSRFEFGQFSF
Secondary Structure (PSIPRED)
ccccccccccccHHHcccccccccccccccccccccccccccccEEcccccccccccHHHHHccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHcccccccccccccccccEEccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEcccccccccEEEEEcccccccccccccccccccccEEEEEEcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEccEEEEcccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHccccccccccEEccEEccccccEEEEEcEEccccEEEEEccccHHHHHHHHHHHHHHHcccccEEcccccHcHHHHccccccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
mwdlndslkdieeseacssqktsidgddekgkqvgsvsnsSSSAVviengsdeeigASERRLlsrsggskiFGVCLYQeameesepeppvtrqffpvdfqeqqatsseagagglafpranwvgvkfcqsepiveagksvieapqplkksrrgprsrssqyrgvtfyrrtgrweshiwdsgkqvylgGFDTAHAAARAYDRAAIKFrgaeadinfsIEDYEDDLKQMSNLTKEEFVHVLRRqstgfprgsskyrgvtlhkcGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAvkcngkdavtnfdpslYQDELKASgksltmswcrpqsrfefgqfsf
Flexible Loop (DISEMBL)
mwdlndslkdieeseacssqktsidgddekgkqvgsvsnssssavviengsdeeigaserrllsrsggsKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVeagksvieapqplkksrrgprsrssqyrgvtfyrrtgrweshiwDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLrrqstgfprgsskyrgvtlhkcgrwEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKcngkdavtnfdpsLYQDELKASGKsltmswcrpqsrfefgqfsf
Low Complexity Region (SEG)
MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQvgsvsnssssavvIENGSDEEIGASErrllsrsggsKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKsrrgprsrssQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTahaaaraydraaIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGKSLTMSWCRPQSRFEFGQFSF
Disordered region (IsUnstruct)
*********************************************************************KIFGVCLYQ*********************************GGLAFPRANWVGVKFCQSEPIVE*************************YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQ***********MSWC*************
Disordered Region (DISOPRED)
MWDLNDSL***********************************************************************************************************************************************************TFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGV*********ARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY*****************************
Disordered Region (DISEMBL)
MWDLNDSLKDI************************************ENGSDEEIGASERRLLSRSGGSKIFGVCLYQEA*********VTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAP****************YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGKSLTMSWCRPQSRFEFGQFSF
Disordered Region (DISPRO)
******************************************************************GGSKIFGVCLYQEAM**SEPEPPVTRQFFPVDF*********************************************************SSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKA***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGKSLTMSWCRPQSRFEFGQFSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
P47927	432	Floral homeotic protein A	yes	no	0.809	0.638	0.659	6e-97
Q9FH95	352	AP2-like ethylene-respons	no	no	0.739	0.715	0.603	1e-79
Q9SK03	449	Ethylene-responsive trans	no	no	0.765	0.581	0.528	5e-60
Q9LVG2	485	AP2-like ethylene-respons	no	no	0.598	0.420	0.544	1e-51
Q38914	555	AP2-like ethylene-respons	no	no	0.510	0.313	0.5	5e-45
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.504	0.308	0.494	7e-45
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.460	0.378	0.517	4e-44
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.492	0.295	0.508	6e-44
Q8LSN2	579	AP2-like ethylene-respons	N/A	no	0.639	0.376	0.426	1e-43
Q8L3U3	579	AP2-like ethylene-respons	N/A	no	0.639	0.376	0.421	2e-43

>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1

 Score =  354 bits (908), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 219/332 (65%), Positives = 242/332 (72%), Gaps = 56/332 (16%)

Query: 1   MWDLND----SLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIG 56
           MWDLND    + ++ E  E C S  +         K+VGS SNSSSSAVVIE+GSD++  
Sbjct: 1   MWDLNDAPHQTQREEESEEFCYSSPS---------KRVGSFSNSSSSAVVIEDGSDDD-- 49

Query: 57  ASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLA- 115
                                 E        P VT QFFP           ++  GG+A 
Sbjct: 50  ----------------------ELNRVRPNNPLVTHQFFP---------EMDSNGGGVAS 78

Query: 116 -FPRANWVGVKFCQSEPIV--EAGKS------VIEAPQPLKKSRRGPRSRSSQYRGVTFY 166
            FPRA+W GVKFCQS+      AGK+      V+E  QPLKKSRRGPRSRSSQYRGVTFY
Sbjct: 79  GFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFY 138

Query: 167 RRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQM 226
           RRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF+I+DY+DDLKQM
Sbjct: 139 RRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIDDYDDDLKQM 198

Query: 227 SNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVE 286
           +NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVE
Sbjct: 199 TNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVE 258

Query: 287 AARAYDRAAVKCNGKDAVTNFDPSLYQDELKA 318
           AARAYD+AA+KCNGKDAVTNFDPS+Y +EL A
Sbjct: 259 AARAYDKAAIKCNGKDAVTNFDPSIYDEELNA 290

Probable transcriptional activator that promotes early floral meristem identity. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS. It is also required during seed development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH95|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 190/315 (60%), Positives = 208/315 (66%), Gaps = 63/315 (20%)

Query: 1   MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASER 60
           MW+LNDS    EES             D +G  VG VSN                     
Sbjct: 1   MWNLNDSPDHHEES-------------DSRGNPVGHVSNG-------------------- 27

Query: 61  RLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRAN 120
             +S+S     F +              PVTR FFP       A S E G     F   N
Sbjct: 28  --MSQSATWLPFVL--------------PVTRNFFP-------AQSMEPGVRWSGF---N 61

Query: 121 WVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSG 180
            VG    +S+P         E   P+KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD G
Sbjct: 62  SVG----KSDPSGSGRPEEPEISPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCG 117

Query: 181 KQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRR 240
           KQVYLGGFDTAHAAARAYDRAAIKFRG +ADINF IEDY DDLKQM NLTKEEF+HVLRR
Sbjct: 118 KQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRR 177

Query: 241 QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG 300
           QSTGFPRGSSKYRGVTLHKCGRWE+R+GQFL KKYVYLGLFDTE+EAARAYD+AA+KCNG
Sbjct: 178 QSTGFPRGSSKYRGVTLHKCGRWESRLGQFLNKKYVYLGLFDTEIEAARAYDKAAIKCNG 237

Query: 301 KDAVTNFDPSLYQDE 315
           KDAVTNFDP +Y++E
Sbjct: 238 KDAVTNFDPKVYEEE 252

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2

 Score =  231 bits (589), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 159/301 (52%), Positives = 193/301 (64%), Gaps = 40/301 (13%)

Query: 27  DDEKGKQVGSVSNSSSSAVVIENGSDEEIGASERRLLSRSGGSKIFGVCLYQEAMEESEP 86
           D+  G +V     S+SS  VI    DE+  ++    LS      I  V       E    
Sbjct: 28  DNSAGNRVEESGTSTSS--VINADGDEDSCSTRAFTLS----FDILKVGSSSGGDESPAA 81

Query: 87  EPPVTRQFFPVD-----FQEQQATSSEAGAGGLAFPRANWVGVKFCQ----SEPIVEAGK 137
              VT++FFPV       ++ + +SS            NW+ + F +       +V    
Sbjct: 82  SASVTKEFFPVSGDCGHLRDVEGSSSSR----------NWIDLSFDRIGDGETKLVTPVP 131

Query: 138 SVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARA 197
           +    P  +KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARA
Sbjct: 132 TPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARA 191

Query: 198 YDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 257
           YDRAAIKFRG +ADINF++ DYE+D+KQ+ NL+KEEFVH+LRRQSTGF RGSSKYRGVTL
Sbjct: 192 YDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTL 251

Query: 258 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELK 317
           HKCGRWEARMGQFLGKK               AYD+AA+  NG++AVTNF+ S YQ+E+ 
Sbjct: 252 HKCGRWEARMGQFLGKK---------------AYDKAAINTNGREAVTNFEMSSYQNEIN 296

Query: 318 A 318
           +
Sbjct: 297 S 297

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG2|TOE2_ARATH AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=1 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 150/224 (66%), Gaps = 20/224 (8%)

Query: 90  VTRQFFPV----DFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQP 145
           +T++FFPV    +F +  A SS +    ++F R    G          +A + +    QP
Sbjct: 88  MTKEFFPVAKGMNFMDSSAQSSRSTVD-ISFQRGKQGGDFIGSGSGGGDASRVMQPPSQP 146

Query: 146 LKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205
           +KKSRRGPRS+SSQYRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAA+KF
Sbjct: 147 VKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKF 206

Query: 206 RGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEA 265
           RG EADINF I DYE+DLKQM+NL+KEE V VLRRQS+GF R +S+Y+GV L K G W A
Sbjct: 207 RGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGA 266

Query: 266 RMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDP 309
           +M Q  G                   D+AAV+  G++A +  +P
Sbjct: 267 QMEQLHGNM---------------GCDKAAVQWKGREAASLIEP 295

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 127/186 (68%), Gaps = 12/186 (6%)

Query: 156 RSSQYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTAHAAARAYDRAAIKF 205
           R+SQYRGVT +R TGR+E+H+WD+          G+QVYLGG+D    AARAYD AA+K+
Sbjct: 280 RTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKY 339

Query: 206 RGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVT-LHKCGRWE 264
            G     NFS E+Y+ +++ M N+T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW+
Sbjct: 340 WGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQ 399

Query: 265 ARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQ-DELKASGKSL 323
           AR+G+  G K +YLG F T+ EAA AYD AA+K  G +AVTNFD + Y  D + +S   L
Sbjct: 400 ARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLL 459

Query: 324 TMSWCR 329
           +    R
Sbjct: 460 SGELAR 465

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  181 bits (459), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 125/192 (65%), Gaps = 20/192 (10%)

Query: 141 EAPQPLKKSRRGPRS---------RSSQYRGVTFYRRTGRWESHIWDS----------GK 181
           + P PL  S   P           R+S YRGVT +R TGR+E+H+WD+          G+
Sbjct: 176 QQPNPLAVSEASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGR 235

Query: 182 QVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQ 241
           QVYLGG+D    AARAYD AA+K+ G     NF I +YE +L++M ++T++EFV  LRR+
Sbjct: 236 QVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRK 295

Query: 242 STGFPRGSSKYRGVT-LHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG 300
           S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G
Sbjct: 296 SSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRG 355

Query: 301 KDAVTNFDPSLY 312
            +AVTNFD S Y
Sbjct: 356 LNAVTNFDISRY 367

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  178 bits (452), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 121/168 (72%), Gaps = 11/168 (6%)

Query: 156 RSSQYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTAHAAARAYDRAAIKF 205
           R+SQYRGVT +R TGR+E+H+WD+          G+QVYLGG+D    AARAYD AA+K+
Sbjct: 220 RTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALKY 279

Query: 206 RGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVT-LHKCGRWE 264
            G    +NF + +YE ++++++N+ ++EFV +LRR S+GF RG+S YRGVT  H+ GRW+
Sbjct: 280 WGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQ 339

Query: 265 ARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 312
           AR+G+  G K +YLG F T+ EAA AYD AA+K  G +AVTNFD + Y
Sbjct: 340 ARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 127/181 (70%), Gaps = 13/181 (7%)

Query: 156 RSSQYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTAHAAARAYDRAAIKF 205
           R+S YRGVT +R TGR+E+H+WD+          G+QVYLGG+D    AARAYD AA+K+
Sbjct: 187 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKY 246

Query: 206 RGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVT-LHKCGRWE 264
            G     NF I +YE ++++M N+T++EFV  +RR+S+GF RG+S YRGVT  H+ GRW+
Sbjct: 247 WGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQ 306

Query: 265 ARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGKSLT 324
           AR+G+  G K +YLG F TE EAA AYD AA+K  G +AVTNF+ + Y  ++KA  +S T
Sbjct: 307 ARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY--DVKAILESNT 364

Query: 325 M 325
           +
Sbjct: 365 L 365

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LSN2|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/230 (42%), Positives = 141/230 (61%), Gaps = 12/230 (5%)

Query: 96  PVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPL-KKSRRGPR 154
           PVD  + Q   + A    L+   +         S  +V  GK++ ++ +   KK+     
Sbjct: 146 PVDNVDNQENGNGAKGLSLSMNSSTSCDNNNYSSNNLVAQGKTIDDSVEATPKKTIESFG 205

Query: 155 SRSSQYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTAHAAARAYDRAAIK 204
            R+S YRGVT +R TGR+E+H+WD+          G+QVYLGG+D    AARAYD AA+K
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 205 FRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVT-LHKCGRW 263
           + G     NF + +YE ++++M ++T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW
Sbjct: 266 YWGTTTTTNFPMSEYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 264 EARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQ 313
           +AR+G+  G K +YLG F T+ EAA AYD AA+K  G  AVTNFD + Y 
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRYN 375

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q8L3U3|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/230 (42%), Positives = 141/230 (61%), Gaps = 12/230 (5%)

Query: 96  PVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPL-KKSRRGPR 154
           PVD  + Q   + A    L+   +         +  +V  GK++ ++ +   KK+     
Sbjct: 146 PVDNVDNQENGNAAKGLSLSMNSSTSCDNNNDSNNNVVAQGKTIDDSVEATPKKTIESFG 205

Query: 155 SRSSQYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTAHAAARAYDRAAIK 204
            R+S YRGVT +R TGR+E+H+WD+          G+QVYLGG+D    AARAYD AA+K
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 205 FRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVT-LHKCGRW 263
           + G     NF + +YE ++++M ++T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW
Sbjct: 266 YWGTTTTTNFPMSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 264 EARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQ 313
           +AR+G+  G K +YLG F T+ EAA AYD AA+K  G  AVTNFD + Y 
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRYN 375

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
195979199	512	transcription factor APETALA2 [Citrus tr	0.947	0.630	0.987	0.0
359480728	511	PREDICTED: floral homeotic protein APETA	0.912	0.608	0.756	1e-116
317106692	493	JHL03K20.2 [Jatropha curcas]	0.920	0.636	0.779	1e-114
147791287	520	hypothetical protein VITISV_042267 [Viti	0.856	0.561	0.699	1e-108
224081723	513	AP2 domain-containing transcription fact	0.982	0.653	0.7	1e-108
342360009	517	APETALA2 [Betula platyphylla]	0.912	0.601	0.756	1e-107
296082382	490	unnamed protein product [Vitis vinifera]	0.868	0.604	0.737	1e-107
357482811	511	Transcription factor APETALA2 [Medicago	0.894	0.596	0.728	1e-106
224096732	534	AP2 domain-containing transcription fact	0.961	0.614	0.673	1e-106
356563604	531	PREDICTED: floral homeotic protein APETA	0.923	0.593	0.722	1e-105

>gi|195979199|gb|ACG63707.1| transcription factor APETALA2 [Citrus trifoliata]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/323 (98%), Positives = 321/323 (99%)

Query: 1   MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASER 60
           MWDLNDSLKDI+ESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASER
Sbjct: 1   MWDLNDSLKDIKESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASER 60

Query: 61  RLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRAN 120
           RLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRAN
Sbjct: 61  RLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRAN 120

Query: 121 WVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSG 180
           WVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSG
Sbjct: 121 WVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSG 180

Query: 181 KQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRR 240
           KQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRR
Sbjct: 181 KQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRR 240

Query: 241 QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG 300
           QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG
Sbjct: 241 QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG 300

Query: 301 KDAVTNFDPSLYQDELKASGKSL 323
           KDAVTNFDPSLYQDELKASG  +
Sbjct: 301 KDAVTNFDPSLYQDELKASGHGV 323

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480728|ref|XP_002283045.2| PREDICTED: floral homeotic protein APETALA 2 [Vitis vinifera] gi|226377504|gb|ACO52508.1| transcription factor APETALA2 [Vitis vinifera]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/329 (75%), Positives = 274/329 (83%), Gaps = 18/329 (5%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSS--AVVIENGSDEEIG 56
           MWDLNDS   +  +ESE CSSQKTS+D  D+KGK+VGSVSN +SS  AVVIE+GSDEE G
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDG 60

Query: 57  ASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAF 116
             ER    RS  SKIFG  +      E E EPPVTRQFFP++  E   TS     G  AF
Sbjct: 61  --ERGQRKRS--SKIFGFSV----THEDEGEPPVTRQFFPMEESEMGTTSC---GGAAAF 109

Query: 117 PRANWVGVKFCQSEPIVEAGKSV---IEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWE 173
           PRA+WVGVKFCQSEP+  AG +    +EA QPLKKSRRGPRSRSSQYRGVTFYRRTGRWE
Sbjct: 110 PRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWE 169

Query: 174 SHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEE 233
           SHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINFS+EDYE+DLKQM NLTKEE
Sbjct: 170 SHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEE 229

Query: 234 FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDR 293
           FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+
Sbjct: 230 FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDK 289

Query: 294 AAVKCNGKDAVTNFDPSLYQDELKASGKS 322
           AA+KCNGK+AVTNFDPS+Y++EL +SG +
Sbjct: 290 AAIKCNGKEAVTNFDPSIYENELNSSGNA 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106692|dbj|BAJ53193.1| JHL03K20.2 [Jatropha curcas]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/322 (77%), Positives = 278/322 (86%), Gaps = 8/322 (2%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDG-DDEKGKQVGSVSNSSSSAVVIENGSDEEIGA 57
           MWDLNDS   +  +ESE CSSQKTS+DG DD KGK+VGSVSNSSSSAVVIE+GS+EE  A
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTSLDGEDDNKGKRVGSVSNSSSSAVVIEDGSEEEDHA 60

Query: 58  SERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFP 117
           S  R   +   SKIFG  + +E   +++   PVTRQFFPV+ QE  ATS  AG+GG  FP
Sbjct: 61  SAERGRIKKRTSKIFGFSVPREDYMDTDA--PVTRQFFPVEDQEMGATS--AGSGGAGFP 116

Query: 118 RANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW 177
           RA+WVGVKFCQSE  + + KSV E  QPLKKSRRGPRSRSSQYRGVT+YRRTGRWESHIW
Sbjct: 117 RAHWVGVKFCQSESSLASPKSV-EMSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIW 175

Query: 178 DSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHV 237
           D GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINFSIEDYE+DLKQMSNLTKEEFVHV
Sbjct: 176 DCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMSNLTKEEFVHV 235

Query: 238 LRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297
           LRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+AA+K
Sbjct: 236 LRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIK 295

Query: 298 CNGKDAVTNFDPSLYQDELKAS 319
           CNGK+AVTNFDPS+Y++EL +S
Sbjct: 296 CNGKEAVTNFDPSIYENELNSS 317

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791287|emb|CAN65605.1| hypothetical protein VITISV_042267 [Vitis vinifera]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 255/329 (77%), Gaps = 37/329 (11%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSS--AVVIENGSDEEIG 56
           MWDLNDS   +  +ESE CSSQKTS+D  D+KGK+VGSVSN +SS  AVVIE+GSDEE G
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDG 60

Query: 57  ASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAF 116
             ER    RS  SKIFG  +      E E EPPVTRQFFP++  E   TS     G  AF
Sbjct: 61  --ERGQRKRS--SKIFGFSV----THEDEGEPPVTRQFFPMEESEMGTTSC---GGAAAF 109

Query: 117 PRANWVGVKFCQSEPIVEAGKSV---IEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWE 173
           PRA+WVGVKFCQSEP+  AG +    +EA QPLKKSRRGPRSRSSQYRGVTFYRRTGRWE
Sbjct: 110 PRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWE 169

Query: 174 SHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEE 233
           SHI                    AYDRAAIKFRG EADINFS+EDYE+DLKQM NLTKEE
Sbjct: 170 SHIC-------------------AYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEE 210

Query: 234 FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDR 293
           FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+
Sbjct: 211 FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDK 270

Query: 294 AAVKCNGKDAVTNFDPSLYQDELKASGKS 322
           AA+KCNGK+AVTNFDPS+Y++EL +SG +
Sbjct: 271 AAIKCNGKEAVTNFDPSIYENELNSSGNA 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081723|ref|XP_002306481.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222855930|gb|EEE93477.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 259/370 (70%), Positives = 291/370 (78%), Gaps = 35/370 (9%)

Query: 1   MWDLNDSLKDI--EESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MW+LNDS      +ESE CSSQKTS DG+ +KGK+VGSVSNSSSSAVVIE+GS+EE G  
Sbjct: 1   MWNLNDSPDQTRDDESEGCSSQKTSKDGEVDKGKRVGSVSNSSSSAVVIEDGSEEEDGCG 60

Query: 59  ER--RLLSR-------SGGSKIFG--VCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSS 107
           ER  R++ +       S  SKIFG  V   Q++M+ S+P  PVTRQFFP++ QE  +TSS
Sbjct: 61  ERGDRIIKKHSISFSSSTSSKIFGFSVPYDQDSMDMSDP--PVTRQFFPLEDQEMGSTSS 118

Query: 108 EAGAGGLA--FPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTF 165
             G  G    FPRA+WVGVKFCQS+  + + KS +E  QPLKKSRRGPRSRSSQYRGVTF
Sbjct: 119 VGGGDGGGGGFPRAHWVGVKFCQSDSSLVSQKS-MEVSQPLKKSRRGPRSRSSQYRGVTF 177

Query: 166 YRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQ 225
           YRRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF IEDYE+DLKQ
Sbjct: 178 YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFRIEDYEEDLKQ 237

Query: 226 MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEV 285
           MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+
Sbjct: 238 MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEI 297

Query: 286 EAARAYDRAAVKCNGKDAVTNFDPSLYQDEL--------------KASGKSLTMSWCRP- 330
           EAARAYDRAA+KCNGK+AVTNFDPS+Y++EL               A+  +L +S   P 
Sbjct: 298 EAARAYDRAAMKCNGKEAVTNFDPSIYENELGKQFNSEDIQESSGNAAAHNLDLSLGNPA 357

Query: 331 --QSRFEFGQ 338
             QS  EFGQ
Sbjct: 358 SKQSSIEFGQ 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342360009|gb|AEL29576.1| APETALA2 [Betula platyphylla]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 249/329 (75%), Positives = 271/329 (82%), Gaps = 18/329 (5%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MWDLNDS   +  +ESE CSSQKTS DGDD+KGK+VGSVSNSSSSAVVIE+GSD++    
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTSFDGDDDKGKRVGSVSNSSSSAVVIEDGSDDDQDGD 60

Query: 59  ERRLLSRS------GGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAG-- 110
             RL  RS        SK+FG        E S P+  VTRQFFP+D  E  ATS   G  
Sbjct: 61  PGRLTKRSTNNNSNSNSKLFGFSF----AENSSPQA-VTRQFFPMDESEAGATSGAGGPT 115

Query: 111 AGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTG 170
           A   AFPRA+WVGVKFCQSE +   GKS  E  QPLKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct: 116 ASAGAFPRAHWVGVKFCQSESL-SPGKS--EVSQPLKKSRRGPRSRSSQYRGVTFYRRTG 172

Query: 171 RWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLT 230
           RWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINFSIEDYE+DLKQMSNLT
Sbjct: 173 RWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMSNLT 232

Query: 231 KEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARA 290
           KEEFVHVLRRQSTGFPRGSSK+RGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARA
Sbjct: 233 KEEFVHVLRRQSTGFPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEMEAARA 292

Query: 291 YDRAAVKCNGKDAVTNFDPSLYQDELKAS 319
           YD+AA+KCNGKDAVTNFDPS+Y++EL ++
Sbjct: 293 YDKAAIKCNGKDAVTNFDPSIYENELNST 321

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082382|emb|CBI21387.3| unnamed protein product [Vitis vinifera]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/327 (73%), Positives = 262/327 (80%), Gaps = 31/327 (9%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MWDLNDS   +  +ESE CSSQKTS               NSSSSAVVIE+GSDEE G  
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTS---------------NSSSSAVVIEDGSDEEDG-- 43

Query: 59  ERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPR 118
           ER    RS  SKIFG  +      E E EPPVTRQFFP++  E   TS     G  AFPR
Sbjct: 44  ERGQRKRS--SKIFGFSV----THEDEGEPPVTRQFFPMEESEMGTTSC---GGAAAFPR 94

Query: 119 ANWVGVKFCQSEPIVEAGKSV---IEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESH 175
           A+WVGVKFCQSEP+  AG +    +EA QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESH
Sbjct: 95  AHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESH 154

Query: 176 IWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFV 235
           IWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINFS+EDYE+DLKQM NLTKEEFV
Sbjct: 155 IWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFV 214

Query: 236 HVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAA 295
           HVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+AA
Sbjct: 215 HVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAA 274

Query: 296 VKCNGKDAVTNFDPSLYQDELKASGKS 322
           +KCNGK+AVTNFDPS+Y++EL +SG +
Sbjct: 275 IKCNGKEAVTNFDPSIYENELNSSGNA 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482811|ref|XP_003611692.1| Transcription factor APETALA2 [Medicago truncatula] gi|355513027|gb|AES94650.1| Transcription factor APETALA2 [Medicago truncatula]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/324 (72%), Positives = 266/324 (82%), Gaps = 19/324 (5%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MWDLNDS   +   ESE CS +   +D D EKGK VGSVSNSSSSA+VIE+GS+EE G  
Sbjct: 1   MWDLNDSPDQRKNYESEGCSMEGDEVDVD-EKGKGVGSVSNSSSSAIVIEDGSEEEDGN- 58

Query: 59  ERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLA--- 115
               +++   SKIFG      +M++S   PPVTRQFFPV+  E   T  ++ +GG     
Sbjct: 59  ----MTKKKSSKIFGF-----SMDDSSDCPPVTRQFFPVEDSETITTVVDSSSGGGGGSS 109

Query: 116 -FPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWES 174
            FPRA+WVGVKFCQSE +   G  ++EA QP+KKSRRGPRSRSSQYRGVTFYRRTGRWES
Sbjct: 110 SFPRAHWVGVKFCQSESV--NGGKIVEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWES 167

Query: 175 HIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEF 234
           HIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF+IEDYE+DLKQMSNLTKEEF
Sbjct: 168 HIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEF 227

Query: 235 VHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRA 294
           VHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+A
Sbjct: 228 VHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKA 287

Query: 295 AVKCNGKDAVTNFDPSLYQDELKA 318
           A+KCNGK+AVTNFDPS+Y +EL +
Sbjct: 288 AIKCNGKEAVTNFDPSIYDNELNS 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096732|ref|XP_002310715.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222853618|gb|EEE91165.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 252/374 (67%), Positives = 284/374 (75%), Gaps = 46/374 (12%)

Query: 1   MWDLNDSLKDI--EESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MW+LNDS      +ESE CSSQKTSIDG+D+KGK+VGSVSNSSSSAVV E+GS+EE    
Sbjct: 1   MWNLNDSPDQTRDDESEGCSSQKTSIDGEDDKGKRVGSVSNSSSSAVVFEDGSEEEDAVG 60

Query: 59  ERRLLSRSGGSKIFG------------------VCLYQEAMEESEPEPPVTRQFFPVDFQ 100
           E+       G+KI                    V   Q +M+ S+P  PVTRQFFP++ Q
Sbjct: 61  EK-------GNKIIKKRSISFSSSSSSKIFGFSVPYDQYSMDMSDP--PVTRQFFPLEDQ 111

Query: 101 EQQATSSEAGAGGLA------FPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPR 154
           E  +TS   G+ G        FPRA+WVGVKFCQSE  + + KS +E  QPLKKSRRGPR
Sbjct: 112 EMGSTSGGGGSFGGGDGVGGGFPRAHWVGVKFCQSESSLASQKS-MEVSQPLKKSRRGPR 170

Query: 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF 214
           SRSSQYRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF
Sbjct: 171 SRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF 230

Query: 215 SIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 274
            IEDYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct: 231 RIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 290

Query: 275 YVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDEL-------KASGKSLTMSW 327
           YVYLGLFDTE+EAARAYD+AA+KCNGK+AVTNFDPS+Y++EL        A+  +L +S 
Sbjct: 291 YVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSNESPGNAADHNLDLSL 350

Query: 328 CRP---QSRFEFGQ 338
             P   Q+  EFGQ
Sbjct: 351 GNPASKQNSIEFGQ 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563604|ref|XP_003550051.1| PREDICTED: floral homeotic protein APETALA 2-like [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/339 (72%), Positives = 266/339 (78%), Gaps = 24/339 (7%)

Query: 1   MWDLNDSL-----KDIEESEACSSQKTSIDGDD----EKGKQVGSVSNSSSSAVVIENGS 51
           MWDLNDS      KD    E CSS KTSIDGDD     KGK+VGSVSNSSSSAVVIE+GS
Sbjct: 1   MWDLNDSPDQRINKDEGSEEGCSSLKTSIDGDDMINNNKGKRVGSVSNSSSSAVVIEDGS 60

Query: 52  DEEIGASE------------RRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDF 99
           +EE+   E            R +  RS  SKIFG  + Q+        PPVTRQFFPV+ 
Sbjct: 61  EEEVDEEEEEEEDDEEGGVGRSMKKRS--SKIFGFSVTQDEESMDSDHPPVTRQFFPVED 118

Query: 100 QEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQ 159
            +    +     G   FPRA+WVGVKFCQSE  + AGKS +E  QP+KKSRRGPRSRSSQ
Sbjct: 119 ADVAVATGGGTGGSSTFPRAHWVGVKFCQSE-TLGAGKSSVEVSQPMKKSRRGPRSRSSQ 177

Query: 160 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDY 219
           YRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF+IEDY
Sbjct: 178 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDY 237

Query: 220 EDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLG 279
           EDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLG
Sbjct: 238 EDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLG 297

Query: 280 LFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKA 318
           LFDTE+EAARAYD+AA+KCNGK+AVTNFDPS+Y +EL  
Sbjct: 298 LFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYNNELNT 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.668	0.527	0.686	1.3e-88
TAIR|locus:2155598	352	TOE3 "target of early activati	0.645	0.625	0.641	3.2e-77
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.530	0.324	0.458	1.9e-37
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.563	0.345	0.411	2.4e-37
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.548	0.329	0.425	6.3e-37
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.577	0.474	0.401	6.3e-37
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.542	0.322	0.422	1.2e-36
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.457	0.313	0.473	4.4e-36
TAIR|locus:2017829	313	WRI4 "WRINKLED 4" [Arabidopsis	0.478	0.520	0.454	7.2e-36
TAIR|locus:2178915	584	BBM "BABY BOOM" [Arabidopsis t	0.536	0.313	0.408	1.7e-35

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
 Identities = 171/249 (68%), Positives = 186/249 (74%)

Query:    88 PPVTRQFFPVDFQEQQATSSEAGAGGLA--FPRANWVGVKFCQSEPIV--EAGKS----- 138
             P VT QFFP           ++  GG+A  FPRA+W GVKFCQS+      AGK+     
Sbjct:    59 PLVTHQFFP---------EMDSNGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAA 109

Query:   139 -VIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXX 197
              V+E  QPLKK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT       
Sbjct:   110 AVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARA 169

Query:   198 XXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 257
                  IKFRG EADINF+I+DY+DDLKQM+NLTKEEFVHVLRRQSTGFPRGSSKYRGVTL
Sbjct:   170 YDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 229

Query:   258 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELK 317
             HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYD+AA+KCNGKDAVTNFDPS+Y +EL 
Sbjct:   230 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELN 289

Query:   318 A--SGKSLT 324
             A  SG   T
Sbjct:   290 AESSGNPTT 298

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

TAIR|locus:2155598 TOE3 "target of early activation tagged (EAT) 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
 Identities = 150/234 (64%), Positives = 165/234 (70%)

Query:    89 PVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKK 148
             PVTR FFP       A S E G     F   N VG    +S+P         E   P+KK
Sbjct:    40 PVTRNFFP-------AQSMEPGVRWSGF---NSVG----KSDPSGSGRPEEPEISPPIKK 85

Query:   149 XXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGA 208
                       QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG 
Sbjct:    86 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 145

Query:   209 EADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMG 268
             +ADINF IEDY DDLKQM NLTKEEF+HVLRRQSTGFPRGSSKYRGVTLHKCGRWE+R+G
Sbjct:   146 DADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRWESRLG 205

Query:   269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGKS 322
             QFL KKYVYLGLFDTE+EAARAYD+AA+KCNGKDAVTNFDP +Y++E   S ++
Sbjct:   206 QFLNKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSET 259

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009408 "response to heat" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 89/194 (45%), Positives = 119/194 (61%)

Query:   138 SVIEA-PQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS----------GKQVYLG 186
             +V EA P P KK           YRGVT +R TGR+E+H+WD+          G+QVYLG
Sbjct:   182 AVSEASPTP-KKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLG 240

Query:   187 GFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFP 246
             G+D             +K+ G     NF I +YE +L++M ++T++EFV  LRR+S+GF 
Sbjct:   241 GYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFS 300

Query:   247 RGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVT 305
             RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G +AVT
Sbjct:   301 RGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVT 360

Query:   306 NFDPSLYQDELKAS 319
             NFD S Y  +  AS
Sbjct:   361 NFDISRYDVKSIAS 374

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 86/209 (41%), Positives = 124/209 (59%)

Query:   128 QSEPIVEAGKSVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS-------- 179
             Q + +V   K ++      +K          QYRGVT +R TGR+E+H+WD+        
Sbjct:   257 QEDVVVVGQKQIVH-----RKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHS 311

Query:   180 --GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHV 237
               G+QVYLGG+D             +K+ G     NFS E+Y+ +++ M N+T++E+V  
Sbjct:   312 RKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAH 371

Query:   238 LRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAV 296
             LRR+S+GF RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+ EAA AYD AA+
Sbjct:   372 LRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAI 431

Query:   297 KCNGKDAVTNFDPSLYQ-DELKASGKSLT 324
             K  G +AVTNFD + Y  D + +S   L+
Sbjct:   432 KFRGTNAVTNFDITRYDVDRIMSSNTLLS 460

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 86/202 (42%), Positives = 126/202 (62%)

Query:   135 AGKSVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS----------GKQVY 184
             +G +++EA  P ++           YRGVT +R TGR+E+H+WD+          G+QVY
Sbjct:   168 SGGAIVEAT-P-RRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVY 225

Query:   185 LGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTG 244
             LGG+D             +K+ G     NF I +YE ++++M N+T++EFV  +RR+S+G
Sbjct:   226 LGGYDKEEKAARAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSG 285

Query:   245 FPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDA 303
             F RG+S YRGVT H + GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +A
Sbjct:   286 FSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNA 345

Query:   304 VTNFDPSLYQDELKASGKSLTM 325
             VTNF+ + Y  ++KA  +S T+
Sbjct:   346 VTNFEINRY--DVKAILESNTL 365

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 86/214 (40%), Positives = 126/214 (58%)

Query:   130 EPIV--EAGKSVIEAPQPL----KKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS---- 179
             EP+   E  K ++  PQ      +K          QYRGVT +R TGR+E+H+WD+    
Sbjct:   188 EPVKVDEKRKRLVVKPQVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKK 247

Query:   180 ------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEE 233
                   G+QVYLGG+D             +K+ G    +NF + +YE ++++++N+ ++E
Sbjct:   248 EGQTRRGRQVYLGGYDEEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQE 307

Query:   234 FVHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYD 292
             FV +LRR S+GF RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+ EAA AYD
Sbjct:   308 FVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 367

Query:   293 RAAVKCNGKDAVTNFDPSLYQDELKASGKSLTMS 326
              AA+K  G +AVTNFD + Y  +   S  ++  S
Sbjct:   368 IAAIKFRGLNAVTNFDINRYDVKRICSSSTIVDS 401

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.2e-36, P = 1.2e-36
 Identities = 84/199 (42%), Positives = 123/199 (61%)

Query:   138 SVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS----------GKQVYLGG 187
             +V+E   P ++           YRGVT +R TGR+E+H+WD+          G+QVYLGG
Sbjct:   161 AVVETATP-RRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGG 219

Query:   188 FDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPR 247
             +D             +K+ G     NF I +YE ++++M ++T++EFV  +RR+S+GF R
Sbjct:   220 YDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSR 279

Query:   248 GSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTN 306
             G+S YRGVT H + GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +AVTN
Sbjct:   280 GASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTN 339

Query:   307 FDPSLYQDELKASGKSLTM 325
             F+ + Y  ++KA  +S T+
Sbjct:   340 FEINRY--DVKAILESSTL 356

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 79/167 (47%), Positives = 110/167 (65%)

Query:   160 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAE 209
             YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G+ 
Sbjct:   232 YRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGST 291

Query:   210 ADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMG 268
             A  NF +  Y  +L++M+++TK+EF+  LRR+S+GF RG+S YRGVT H + GRW+AR+G
Sbjct:   292 ATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIG 351

Query:   269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDE 315
             +  G K +YLG F TE EAA AYD AA+K  G +AVTNF+ + Y  E
Sbjct:   352 RVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIE 398

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 79/174 (45%), Positives = 110/174 (63%)

Query:   160 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAE 209
             YRGVT +R TGR+E+H+WD           G+QVYLG +D             +K+ G +
Sbjct:    53 YRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAALKYWGRD 112

Query:   210 ADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKC-GRWEARMG 268
               +NF +  Y++D+K+M   +KEE++  LRR+S+GF RG SKYRGV  H   GRWEAR+G
Sbjct:   113 TLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIG 172

Query:   269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGKS 322
             +  G KY+YLG + T+ EAA AYD AA++  G +AVTNFD S Y +   A+ K+
Sbjct:   173 RVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDVSRYLNPNAAADKA 226

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0003677 "DNA binding" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 1.7e-35, P = 1.7e-35
 Identities = 80/196 (40%), Positives = 120/196 (61%)

Query:   129 SEPIVEAGKSVIEAPQPL-KKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS-------- 179
             ++ +V+  K++++  +   KK           YRGVT +R TGR+E+H+WD+        
Sbjct:   180 NDDVVQE-KTIVDVVETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQT 238

Query:   180 --GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHV 237
               G+QVYLGG+D             +K+ G     NF + +YE ++++M ++T++E+V  
Sbjct:   239 RKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVAS 298

Query:   238 LRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAV 296
             LRR+S+GF RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+ EAA AYD AA+
Sbjct:   299 LRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAI 358

Query:   297 KCNGKDAVTNFDPSLY 312
             K  G  AVTNFD + Y
Sbjct:   359 KFRGLSAVTNFDMNRY 374

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47927	AP2_ARATH	No assigned EC number	0.6596	0.8093	0.6388	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-26
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-23
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-23
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-22
pfam00847	53	pfam00847, AP2, AP2 domain	4e-09
pfam00847	53	pfam00847, AP2, AP2 domain	2e-07

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 99.3 bits (248), Expect = 2e-26
 Identities = 33/63 (52%), Positives = 37/63 (58%)

Query: 251 KYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310
           KYRGV     G+W A +      K V+LG FDT  EAARAYDRAA K  G+ A  NF  S
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 311 LYQ 313
           LY 
Sbjct: 61  LYD 63

Length = 64

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 91.6 bits (228), Expect = 2e-23
 Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 159 QYRGVTFYRRTGRWESHIWDS--GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSI 216
           +YRGV   R  G+W + I D   GK+V+LG FDTA  AARAYDRAA KFRG  A +NF  
Sbjct: 1   KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 217 EDYE 220
             Y+
Sbjct: 60  SLYD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 90.8 bits (226), Expect = 3e-23
 Identities = 32/61 (52%), Positives = 38/61 (62%)

Query: 250 SKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDP 309
           SKYRGV     G+W A +    G + ++LG FDT  EAARAYDRAA+K  G  AV NF  
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 310 S 310
           S
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 88.1 bits (219), Expect = 2e-22
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 3/59 (5%)

Query: 158 SQYRGVTFYRRTGRWESHIWDS--GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF 214
           S+YRGV   R  G+W + I D   G++++LG FDTA  AARAYDRAA+K RG+ A +NF
Sbjct: 1   SKYRGVRQ-RPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 158 SQYRGVTFYRRTGRWESHIWDSG----KQVYLGGFDTAHAAARAYDRAAIKFRG 207
           S Y+GV + +R GRW + I D G    K+  LG F T   AARA   A +K RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 25/54 (46%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 250 SKYRGVTLHKC-GRWEA--RMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG 300
           S Y+GV   K  GRW A  R      KK   LG F TE EAARA   A +K  G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.72
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.71
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.71
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.7
PHA00280	121	putative NHN endonuclease	99.46
PHA00280	121	putative NHN endonuclease	99.36
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.11
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.9
cd00652	174	TBP_TLF TATA box binding protein (TBP): Present in	84.92
cd04518	174	TBP_archaea archaeal TATA box binding protein (TBP	81.4

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.72  E-value=7.9e-18  Score=126.42  Aligned_cols=59  Identities=53%  Similarity=0.885  Sum_probs=55.3

Q ss_pred             CCeeEeEEecCCCeEEEEeecC--CeeEEeCCCCCHHHHHHHHHHHHHHhcCCccccccccc
Q 019391          158 SQYRGVTFYRRTGRWESHIWDS--GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE  217 (341)
Q Consensus       158 S~YRGV~~~r~~gKW~A~I~~~--gKri~LGtF~TaEeAArAYD~Aai~l~G~~A~~NFp~s  217 (341)
                      |+|+||++++ +|||+|+|+++  ++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999765 59999999999  99999999999999999999999999999999999853

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.71  E-value=1.5e-17  Score=126.37  Aligned_cols=63  Identities=52%  Similarity=0.769  Sum_probs=58.8

Q ss_pred             cccCeeEeecceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCcccH
Q 019391          251 KYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQ  313 (341)
Q Consensus       251 ~yrGV~~~k~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl~G~~A~tNFp~s~Y~  313 (341)
                      +|+||++++.|+|+|+|+...+++.++||+|+|+||||+|||.|+++++|..+.+|||+++|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999888899999996555899999999999999999999999999999999999999995

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.71  E-value=2.5e-17  Score=125.14  Aligned_cols=61  Identities=57%  Similarity=0.945  Sum_probs=57.7

Q ss_pred             CeeEeEEecCCCeEEEEeec--CCeeEEeCCCCCHHHHHHHHHHHHHHhcCCccccccccccch
Q 019391          159 QYRGVTFYRRTGRWESHIWD--SGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYE  220 (341)
Q Consensus       159 ~YRGV~~~r~~gKW~A~I~~--~gKri~LGtF~TaEeAArAYD~Aai~l~G~~A~~NFp~s~Y~  220 (341)
                      +|+||++ +++|||+|+|++  .+++++||+|+|+||||+|||.|+++++|..+.+|||.++|+
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5999997 567999999999  899999999999999999999999999999999999999886

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.70  E-value=2.5e-17  Score=123.70  Aligned_cols=61  Identities=52%  Similarity=0.797  Sum_probs=55.7

Q ss_pred             ccccCeeEeecceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 019391          250 SKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS  310 (341)
Q Consensus       250 S~yrGV~~~k~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl~G~~A~tNFp~s  310 (341)
                      |+|+||++++.|+|+|+|+....++.++||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999995433389999999999999999999999999999999999874

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.46  E-value=1.4e-13  Score=117.76  Aligned_cols=65  Identities=20%  Similarity=0.322  Sum_probs=58.3

Q ss_pred             cccCCCCCCCCCCCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhcCCccc
Q 019391          146 LKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEAD  211 (341)
Q Consensus       146 ~kk~~~~~~~~sS~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~G~~A~  211 (341)
                      ..++++.+++++|+|+||+|++..+||+|+|.++||+++||+|+|+|+|+.||+ ++.+++|.+|+
T Consensus        55 N~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         55 NSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HhcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            345556677899999999999999999999999999999999999999999997 67889998764

>PHA00280 putative NHN endonuclease

Probab=99.36  E-value=2.3e-12  Score=110.25  Aligned_cols=104  Identities=16%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHhcCCccc---ccccc-ccchhhhhhccccchhhhhhhhccccCCCCCCCccccCeeEee-cceEEEEec
Q 019391          194 AARAYDRAAIKFRGAEAD---INFSI-EDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMG  268 (341)
Q Consensus       194 AArAYD~Aai~l~G~~A~---~NFp~-s~Y~~el~~l~~lskEE~V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~  268 (341)
                      +-+++..+...++|.-..   +.+-. ......+..|+.++..+...+.+..    ..++|+|+||+|++ .|||+|+| 
T Consensus        11 ~~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I-   85 (121)
T PHA00280         11 APRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTV-   85 (121)
T ss_pred             hhhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEE-
Confidence            445677777888885331   12211 1233456777777777766665433    46789999999987 89999999 


Q ss_pred             eecCceeEEeccCCCHHHHHHHHHHHHHHhcCCCCC
Q 019391          269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAV  304 (341)
Q Consensus       269 ~~~~~k~~~LG~FdTeeEAArAYDkAaikl~G~~A~  304 (341)
                       ..++|+++||+|+++|+|+.||+ ++++|||..|.
T Consensus        86 -~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         86 -TAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             -EECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence             68999999999999999999997 77899998664

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.11  E-value=1.6e-10  Score=84.78  Aligned_cols=50  Identities=34%  Similarity=0.557  Sum_probs=46.7

Q ss_pred             CCeeEeEEecCCCeEEEEeecC-----CeeEEeCCCCCHHHHHHHHHHHHHHhcC
Q 019391          158 SQYRGVTFYRRTGRWESHIWDS-----GKQVYLGGFDTAHAAARAYDRAAIKFRG  207 (341)
Q Consensus       158 S~YRGV~~~r~~gKW~A~I~~~-----gKri~LGtF~TaEeAArAYD~Aai~l~G  207 (341)
                      |+|+||+|++..++|+|+|++.     +|.++||.|.++++|++|++.+++.++|
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~   55 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEG   55 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999883     4899999999999999999999999887

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.90  E-value=4.5e-09  Score=77.04  Aligned_cols=52  Identities=37%  Similarity=0.554  Sum_probs=45.0

Q ss_pred             ccccCeeEee-cceEEEEeceec-C--ceeEEeccCCCHHHHHHHHHHHHHHhcCC
Q 019391          250 SKYRGVTLHK-CGRWEARMGQFL-G--KKYVYLGLFDTEVEAARAYDRAAVKCNGK  301 (341)
Q Consensus       250 S~yrGV~~~k-~GkW~ArI~~~~-~--~k~~~LG~FdTeeEAArAYDkAaikl~G~  301 (341)
                      |+|+||++++ .++|+|+|+... +  ++.++||.|++++||++|++.+.++++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999987 899999996521 1  49999999999999999999999999873

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription

Probab=84.92  E-value=30  Score=31.38  Aligned_cols=134  Identities=16%  Similarity=0.162  Sum_probs=80.6

Q ss_pred             CCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhc--CCcc--ccccccccchhhhhhccccchhh
Q 019391          158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAEA--DINFSIEDYEDDLKQMSNLTKEE  233 (341)
Q Consensus       158 S~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~--G~~A--~~NFp~s~Y~~el~~l~~lskEE  233 (341)
                      .+|.||.++-..-+=.+.|+..||-+--|.. +.++|..|.++.+..+.  |...  ..||....-......-..+..++
T Consensus        34 e~fpgli~R~~~P~~t~lIf~sGKivitGak-s~~~~~~a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~~  112 (174)
T cd00652          34 KRFPGVIMRLREPKTTALIFSSGKMVITGAK-SEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLEE  112 (174)
T ss_pred             CccceEEEEcCCCcEEEEEECCCEEEEEecC-CHHHHHHHHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHHH
Confidence            5688999877778888999999998777764 67788888887766663  3221  23443221111111111222333


Q ss_pred             hhhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHh
Q 019391          234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC  298 (341)
Q Consensus       234 ~V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl  298 (341)
                      +....+....   =...+|.|+.++- .-+=.+-|  +..||-+-.|. .+++|+.+|+++-.-.|
T Consensus       113 la~~~~~~~~---YePe~fpgli~r~~~pk~t~lI--F~sGkvvitGa-ks~~~~~~a~~~i~~~L  172 (174)
T cd00652         113 LALKHPENAS---YEPELFPGLIYRMDEPKVVLLI--FVSGKIVITGA-KSREDIYEAVEKIYPIL  172 (174)
T ss_pred             HHhhhhcccE---ECCccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            3333332221   1235789988765 34555555  77788777776 67889999987765443

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many

>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription

Probab=81.40  E-value=42  Score=30.54  Aligned_cols=135  Identities=16%  Similarity=0.225  Sum_probs=81.8

Q ss_pred             CCCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhcCCc--c--ccccccccchhhhhhccccchh
Q 019391          157 SSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAE--A--DINFSIEDYEDDLKQMSNLTKE  232 (341)
Q Consensus       157 sS~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~G~~--A--~~NFp~s~Y~~el~~l~~lskE  232 (341)
                      ..+|.||.++-+.-+=.+-|+..||-+--|. .+.++|..|-++.+..+....  .  ..+|.....-.....-..+..+
T Consensus        33 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa-ks~~~a~~a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L~  111 (174)
T cd04518          33 PDQFPGLVYRLEDPKIAALIFRSGKMVCTGA-KSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNLD  111 (174)
T ss_pred             CCcCcEEEEEccCCcEEEEEECCCeEEEEcc-CCHHHHHHHHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCHH
Confidence            3568999987777788899999999877765 678888888888776664322  1  1222221111110000112222


Q ss_pred             hhhhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHhc
Q 019391          233 EFVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCN  299 (341)
Q Consensus       233 E~V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl~  299 (341)
                      .+...++ ...   =...+|.|+.++- .-+=.+-|  +..||-+-.|. .+++|+.+|.++-...|.
T Consensus       112 ~la~~~~-~~~---YePe~fpglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~a~~~i~~~l~  172 (174)
T cd04518         112 AIAIGLP-NAE---YEPEQFPGLVYRLDEPKVVLLL--FSSGKMVITGA-KSEEDAKRAVEKLLSRLK  172 (174)
T ss_pred             HHHhhCC-CCc---cCcccCceEEEEecCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence            3332222 211   1335889988764 34555666  77888777776 678999999888766553

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-15
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 68.5 bits (168), Expect = 3e-15
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 159 QYRGVTFYRRT-GRWESHIWDSGKQ---VYLGGFDTAHAAARAYDRAAIKFRGAEADINF 214
            YRGV   +R  G++ + I D  K    V+LG F+TA  AA AYDRAA + RG+ A +NF
Sbjct: 2   HYRGVR--QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Query: 215 SIE 217
            + 
Sbjct: 60  PLR 62

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 251 KYRGVTLHKCGRW--EARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNF 307
            YRGV     G++  E R     G + V+LG F+T  +AA AYDRAA +  G  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGAR-VWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 39/160 (24%)

Query: 213 NFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYR--GVTLHKCGRWEAR-MGQ 269
           NF  +D +D  K +  L+KEE  H++  +       S   R     L K      + + +
Sbjct: 32  NFDCKDVQDMPKSI--LSKEEIDHIIMSKD----AVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 270 FLGKKYVYLG------LFDTEVEAARAYDRAAVKCNG-----KDAVTNFDP------SLY 312
            L   Y +L            +      ++     N      K  V+   P      +L 
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 313 QDE---------LKASGKS-LTMSWCR---PQSRFEFGQF 339
           +           +  SGK+ + +  C     Q + +F  F
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.79
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.79
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	94.82
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	84.36
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	82.46
3eik_A	218	Tata-box-binding protein; DNA-binding, initiation	80.07

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.79  E-value=6.1e-20  Score=139.00  Aligned_cols=58  Identities=48%  Similarity=0.823  Sum_probs=54.0

Q ss_pred             CeeEeEEecCCCeEEEEeecC---CeeEEeCCCCCHHHHHHHHHHHHHHhcCCccccccccc
Q 019391          159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE  217 (341)
Q Consensus       159 ~YRGV~~~r~~gKW~A~I~~~---gKri~LGtF~TaEeAArAYD~Aai~l~G~~A~~NFp~s  217 (341)
                      +||||++ +++|||+|+|+++   ++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999997 5799999999984   78999999999999999999999999999999999954

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.79  E-value=1.2e-19  Score=137.33  Aligned_cols=60  Identities=38%  Similarity=0.592  Sum_probs=55.4

Q ss_pred             cccCeeEeecceEEEEeceec-CceeEEeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 019391          251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS  310 (341)
Q Consensus       251 ~yrGV~~~k~GkW~ArI~~~~-~~k~~~LG~FdTeeEAArAYDkAaikl~G~~A~tNFp~s  310 (341)
                      +|+||++++.|||+|+|+... +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            699999988999999997543 478999999999999999999999999999999999976

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=94.82  E-value=0.015  Score=45.26  Aligned_cols=29  Identities=28%  Similarity=0.564  Sum_probs=25.5

Q ss_pred             CCCCCeeEeEEecCCCeEEEEeecCCeeE
Q 019391          155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV  183 (341)
Q Consensus       155 ~~sS~YRGV~~~r~~gKW~A~I~~~gKri  183 (341)
                      ..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence            46799999999999999999999988754

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=84.36  E-value=0.1  Score=45.35  Aligned_cols=88  Identities=9%  Similarity=-0.003  Sum_probs=54.0

Q ss_pred             HHHHHHHHhcCCccc---cccccc-cchhhhhhccccchhhhhhhhccccCCCCCCCccccCeeEeecceEEEEeceecC
Q 019391          197 AYDRAAIKFRGAEAD---INFSIE-DYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG  272 (341)
Q Consensus       197 AYD~Aai~l~G~~A~---~NFp~s-~Y~~el~~l~~lskEE~V~~LRRqS~g~~r~sS~yrGV~~~k~GkW~ArI~~~~~  272 (341)
                      ++...+..|.|....   .++-.. .....+..|.-++..|..........   .  ..++||.+.+.++|.+.|  ...
T Consensus        55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~---~--~~~~g~~~~~~~k~~~vi--~~~  127 (174)
T 1u3e_M           55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT---L--NVSKAQQIAKIKNQKPII--VIS  127 (174)
T ss_dssp             HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC---C--CCHHHHHHHHHHTCCCEE--EEC
T ss_pred             eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc---c--cceeeeeeccCCCCceEE--EEc
Confidence            555556667664321   222211 12345667777888777665444321   1  124677652356799988  455


Q ss_pred             ceeEEeccCCCHHHHHHHHH
Q 019391          273 KKYVYLGLFDTEVEAARAYD  292 (341)
Q Consensus       273 ~k~~~LG~FdTeeEAArAYD  292 (341)
                       +..+||.|+|.+|||++|.
T Consensus       128 -~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          128 -PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             -TTSCEEEESCHHHHHHHHT
T ss_pred             -CCceEEeeCCHHHHHHHHC
Confidence             6678999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=82.46  E-value=1.1  Score=34.73  Aligned_cols=28  Identities=32%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             CCCccccCeeEee-cceEEEEeceecCceeE
Q 019391          247 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYV  276 (341)
Q Consensus       247 r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~  276 (341)
                      ..+|+|.||+|.+ .+.|.|.-  ..++++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W--~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFF--YDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEE--EETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEE--ecCCeEe
Confidence            3568999999988 78999997  4555543

>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C

Probab=80.07  E-value=25  Score=32.03  Aligned_cols=134  Identities=15%  Similarity=0.166  Sum_probs=83.8

Q ss_pred             CCeeEeEEecCCCeEEEEeecCCeeEEeCCCCCHHHHHHHHHHHHHHhcCCccccc---cccccchhhhhhccccchhhh
Q 019391          158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADIN---FSIEDYEDDLKQMSNLTKEEF  234 (341)
Q Consensus       158 S~YRGV~~~r~~gKW~A~I~~~gKri~LGtF~TaEeAArAYD~Aai~l~G~~A~~N---Fp~s~Y~~el~~l~~lskEE~  234 (341)
                      .+|-||.++-+.-+-.+-|+..||-+..|. .++++|..|.++.+..+....-...   |...........-..+..+++
T Consensus        75 e~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~l  153 (218)
T 3eik_A           75 KRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGL  153 (218)
T ss_dssp             TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred             ccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHH
Confidence            357889887788899999999999888876 5688899998888776653221222   221111110011112222333


Q ss_pred             hhhhccccCCCCCCCccccCeeEee-cceEEEEeceecCceeEEeccCCCHHHHHHHHHHHHHHh
Q 019391          235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC  298 (341)
Q Consensus       235 V~~LRRqS~g~~r~sS~yrGV~~~k-~GkW~ArI~~~~~~k~~~LG~FdTeeEAArAYDkAaikl  298 (341)
                      .........   =....|.|+.++- .-+=...|  +..||-+-.|. .+++|+..|++.-.-.|
T Consensus       154 a~~~~~~~~---YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L  212 (218)
T 3eik_A          154 AYAHSNYCS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL  212 (218)
T ss_dssp             HHHSTTTEE---CCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred             HHhccCCcE---ECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence            322222221   1224788988765 45667777  77888888887 78999999999865544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	7e-21
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-19

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.8 bits (205), Expect = 7e-21
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFS 215
            YRGV   R  G++ + I D    G +V+LG F+TA  AA AYDRAA + RG+ A +NF 
Sbjct: 2   HYRGVR-QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 216 IE 217
           + 
Sbjct: 61  LR 62

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.6 bits (194), Expect = 2e-19
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 251 KYRGVTLHKCGRWEARMGQFLGK-KYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNF 307
            YRGV     G++ A +         V+LG F+T  +AA AYDRAA +  G  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.82
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.8

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=4.8e-21  Score=143.46  Aligned_cols=60  Identities=38%  Similarity=0.587  Sum_probs=55.2

Q ss_pred             cccCeeEeecceEEEEecee-cCceeEEeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 019391          251 KYRGVTLHKCGRWEARMGQF-LGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS  310 (341)
Q Consensus       251 ~yrGV~~~k~GkW~ArI~~~-~~~k~~~LG~FdTeeEAArAYDkAaikl~G~~A~tNFp~s  310 (341)
                      +|+||++++.|||+|+|+.. ..+++++||+|+|+||||+|||+|+++|+|..+.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999998899999999753 4568899999999999999999999999999999999975

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.5e-20  Score=140.82  Aligned_cols=58  Identities=47%  Similarity=0.788  Sum_probs=53.0

Q ss_pred             CeeEeEEecCCCeEEEEeec---CCeeEEeCCCCCHHHHHHHHHHHHHHhcCCccccccccc
Q 019391          159 QYRGVTFYRRTGRWESHIWD---SGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE  217 (341)
Q Consensus       159 ~YRGV~~~r~~gKW~A~I~~---~gKri~LGtF~TaEeAArAYD~Aai~l~G~~A~~NFp~s  217 (341)
                      +||||+++ ++|||+|+|++   .++++|||+|+|+||||+|||.|++.++|..+.+|||+.
T Consensus         2 ~yrGVr~r-~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeEC-CCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999964 68999999986   467899999999999999999999999999999999964