Citrus Sinensis ID: 019410

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
MERKESGNDSDAFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGKQPTPPTTTQ
cccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHcccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEcEEEEcccccEEHHHHccccccccccccc
cccccccccHHHccccHccccccccccccccccccccccEEccccccccccccccccHHHHHHcccccccccccccccHHHHHHHccEEEEEHHHccccccccHHHHHHcccHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccEEEEEEEcccccccccccccHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEcHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEEccccEEHHHHHHHHHHHHcccccccccccc
merkesgndsdafgfkfltktsyappswashlapipshvfslghfptpihkwnlpnlphntevwlksnfsgvsddfwnLWGFERICYVLLLQRddlsgmqlsgnkvrKLEFLMADAVAQGADCIItiggiqsnHCRAAAVAAKYLNLDCYLILRTskvlvdqdpgligNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKllkegrrpyvipvggsnsigtWGYIEAIKEIEQQLQtgtggvkfDDIVVACGsggtiaglsLGSWLGTLKAKVHafsvcddpdyfydYTQGLLdglnagvdsrdivnIQNVSVYMTFKNILMNILmngkqptpptttq
merkesgndsdaFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIskeeyskigsvtltNILKekllkegrrpyvipvggsnsiGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNilmngkqptpptttq
MERKESGNDSDAFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGKQPTPPTTTQ
************FGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILM************
**********************YAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNG**********
*********SDAFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGK*********
************FGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGK*********
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MERKESGNDSDAFGFKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNGKQPTPPTTTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query341 2.2.26 [Sep-21-2011]
O57809325 Putative 1-aminocycloprop yes no 0.475 0.498 0.443 4e-35
Q9WY68312 Putative 1-aminocycloprop yes no 0.604 0.660 0.392 5e-33
Q8U4R3329 Putative 1-aminocycloprop yes no 0.521 0.541 0.411 4e-32
Q9V2L2330 Putative 1-aminocycloprop yes no 0.486 0.503 0.418 6e-31
P59329328 D-cysteine desulfhydrase yes no 0.589 0.612 0.382 6e-30
Q1RAM1328 D-cysteine desulfhydrase yes no 0.589 0.612 0.387 9e-30
B7MCH6328 D-cysteine desulfhydrase yes no 0.589 0.612 0.387 9e-30
B7UST8328 D-cysteine desulfhydrase yes no 0.589 0.612 0.387 9e-30
B2TXG4328 D-cysteine desulfhydrase yes no 0.577 0.600 0.389 1e-29
A8A1C2328 D-cysteine desulfhydrase yes no 0.577 0.600 0.389 1e-29
>sp|O57809|1A1D_PYRHO Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0054 PE=1 SV=2 Back     alignment and function desciption
 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/176 (44%), Positives = 116/176 (65%), Gaps = 14/176 (7%)

Query: 91  LQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCY 150
           ++RDDL+G+ + GNK+RKLE+L+ DA+++GAD +IT+G + SNH     +AAK L LD  
Sbjct: 40  IKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAI 99

Query: 151 LILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRR 210
           L+LR  + L        GN L+++++G    +   ++  ++  +     + E+L +EGR+
Sbjct: 100 LVLRGKEELK-------GNYLLDKIMGIETRVYDAKDSFEL--MKYAEEIAEELKREGRK 150

Query: 211 PYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 266
           PYVIP GG++ IGT GY+ A+ EI  Q +     VKFD IVVA GSGGT+AGLSLG
Sbjct: 151 PYVIPPGGASPIGTLGYVRAVGEIATQSE-----VKFDSIVVAAGSGGTLAGLSLG 201

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)
EC: 3EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 7
>sp|Q9WY68|1A1D_THEMA Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0225 PE=3 SV=1 Back     alignment and function description
>sp|Q8U4R3|1A1D_PYRFU Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0010 PE=3 SV=2 Back     alignment and function description
>sp|Q9V2L2|1A1D_PYRAB Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB00630 PE=3 SV=1 Back     alignment and function description
>sp|P59329|DCYD_ECOL6 D-cysteine desulfhydrase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dcyD PE=3 SV=2 Back     alignment and function description
>sp|Q1RAM1|DCYD_ECOUT D-cysteine desulfhydrase OS=Escherichia coli (strain UTI89 / UPEC) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|B7MCH6|DCYD_ECO45 D-cysteine desulfhydrase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|B7UST8|DCYD_ECO27 D-cysteine desulfhydrase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|B2TXG4|DCYD_SHIB3 D-cysteine desulfhydrase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|A8A1C2|DCYD_ECOHS D-cysteine desulfhydrase OS=Escherichia coli O9:H4 (strain HS) GN=dcyD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
224120432387 predicted protein [Populus trichocarpa] 0.800 0.705 0.775 1e-132
118488292387 unknown [Populus trichocarpa] 0.800 0.705 0.775 1e-132
255573527427 1-aminocyclopropane-1-carboxylate deamin 0.797 0.637 0.765 1e-131
388508576381 unknown [Lotus japonicus] 0.809 0.724 0.772 1e-128
356512946379 PREDICTED: putative 1-aminocyclopropane- 0.815 0.733 0.756 1e-127
326497841422 predicted protein [Hordeum vulgare subsp 0.794 0.642 0.734 1e-127
219884061395 unknown [Zea mays] 0.794 0.686 0.731 1e-127
242066688395 hypothetical protein SORBIDRAFT_04g03464 0.794 0.686 0.731 1e-126
449439221 454 PREDICTED: putative 1-aminocyclopropane- 0.803 0.603 0.74 1e-126
212275880395 hypothetical protein [Zea mays] gi|19468 0.794 0.686 0.728 1e-126
>gi|224120432|ref|XP_002318328.1| predicted protein [Populus trichocarpa] gi|222859001|gb|EEE96548.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/299 (77%), Positives = 254/299 (84%), Gaps = 26/299 (8%)

Query: 15  FKFLTKTSYAPPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSD 74
           F FL++ +Y PPSWAS L PIPSH+FSLGH PTPIHKWNLPNLP NTEV+LK        
Sbjct: 15  FDFLSQKAYTPPSWASLLNPIPSHIFSLGHLPTPIHKWNLPNLPTNTEVYLK-------- 66

Query: 75  DFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 134
                             RDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH
Sbjct: 67  ------------------RDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 108

Query: 135 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194
           CRA AVAAKYLNLDCYLILR SKV+VD+DPGL GNLLVERLVGA+++LISKEEY++IGSV
Sbjct: 109 CRATAVAAKYLNLDCYLILRASKVVVDKDPGLTGNLLVERLVGANVQLISKEEYAQIGSV 168

Query: 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVAC 254
            LTN LKEKL+KEGR+PYVIPVGGSNS+GTWGYIEAI+EIEQQ+Q  TG +KFDDIVVAC
Sbjct: 169 NLTNDLKEKLVKEGRKPYVIPVGGSNSLGTWGYIEAIREIEQQVQATTGRIKFDDIVVAC 228

Query: 255 GSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQN 313
           GSGGTIAGLSLGSWLGTLKAKVHAF+VCDDPDYFY++ Q L+DGL AGVDS DIVNIQN
Sbjct: 229 GSGGTIAGLSLGSWLGTLKAKVHAFAVCDDPDYFYNFVQDLIDGLKAGVDSHDIVNIQN 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118488292|gb|ABK95965.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573527|ref|XP_002527688.1| 1-aminocyclopropane-1-carboxylate deaminase, putative [Ricinus communis] gi|223532919|gb|EEF34687.1| 1-aminocyclopropane-1-carboxylate deaminase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388508576|gb|AFK42354.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356512946|ref|XP_003525175.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Glycine max] Back     alignment and taxonomy information
>gi|326497841|dbj|BAJ94783.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|219884061|gb|ACL52405.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|242066688|ref|XP_002454633.1| hypothetical protein SORBIDRAFT_04g034640 [Sorghum bicolor] gi|241934464|gb|EES07609.1| hypothetical protein SORBIDRAFT_04g034640 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|449439221|ref|XP_004137385.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Cucumis sativus] gi|449507162|ref|XP_004162950.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|212275880|ref|NP_001130254.1| hypothetical protein [Zea mays] gi|194688676|gb|ACF78422.1| unknown [Zea mays] gi|413939136|gb|AFW73687.1| hypothetical protein ZEAMMB73_104591 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
TAIR|locus:2007725401 D-CDES "AT1G48420" [Arabidopsi 0.803 0.683 0.662 1e-93
TIGR_CMR|SPO_2657385 SPO_2657 "ACC deaminase/D-cyst 0.536 0.475 0.418 6.1e-31
UNIPROTKB|Q4KK38331 dcyD "D-cysteine desulfhydrase 0.483 0.498 0.424 3.4e-29
UNIPROTKB|P76316328 dcyD [Escherichia coli K-12 (t 0.498 0.518 0.441 1.2e-28
UNIPROTKB|Q48PM3332 dcyD "D-cysteine desulfhydrase 0.513 0.527 0.392 1.9e-28
UNIPROTKB|Q81NG1331 BAS3005 "Putative pyridoxal ph 0.516 0.531 0.409 6.4e-28
TIGR_CMR|BA_3236331 BA_3236 "pyridoxal phosphate-d 0.516 0.531 0.409 6.4e-28
UNIPROTKB|Q5LL69339 cuyA "L-cysteate sulfo-lyase" 0.524 0.528 0.397 3.2e-26
TIGR_CMR|SPO_A0158339 SPO_A0158 "ACC deaminase/D-cys 0.524 0.528 0.397 3.2e-26
POMBASE|SPAC922.03338 SPAC922.03 "1-aminocyclopropan 0.504 0.508 0.384 5.3e-24
TAIR|locus:2007725 D-CDES "AT1G48420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 192/290 (66%), Positives = 221/290 (76%)

Query:    26 PSWASHLAPIPSHVFS-LGHF-PTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFE 83
             PS A  L   P    S   H  P P H ++L +LP     W   N  G+ +    LW   
Sbjct:    26 PSMADFLTKKPYSPPSWASHLRPLPSHTFSLAHLPTPIHRW---NLPGLPNGT-ELW--- 78

Query:    84 RICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAK 143
                    ++RDD +GM+LSGNKVRKLEFLMA+AV Q AD +ITIGGIQSNHCRA A A+ 
Sbjct:    79 -------IKRDDFTGMELSGNKVRKLEFLMAEAVDQHADTVITIGGIQSNHCRATATASN 131

Query:   144 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEK 203
             YLNL+ +LILRTSK+L D+DPGL+GNLLVERLVGA++ LISKEEYS IGS  LTN LKEK
Sbjct:   132 YLNLNSHLILRTSKLLADEDPGLVGNLLVERLVGANVHLISKEEYSSIGSEALTNALKEK 191

Query:   204 LLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGL 263
             L KEG++PYVIPVGGSNS+GTWGYIEA +EIE+QL      +KFDDIVVACGSGGTIAG+
Sbjct:   192 LEKEGKKPYVIPVGGSNSLGTWGYIEAAREIEEQLNYRPDDLKFDDIVVACGSGGTIAGI 251

Query:   264 SLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQN 313
             SLGSWLG LKAKVHAFSVCDDPDYFYD+ QGLLDGL+AGV+SRDIVNI N
Sbjct:   252 SLGSWLGALKAKVHAFSVCDDPDYFYDFVQGLLDGLHAGVNSRDIVNIHN 301
GO:0003824 "catalytic activity" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0008660 "1-aminocyclopropane-1-carboxylate deaminase activity" evidence=IGI;IDA
GO:0019148 "D-cysteine desulfhydrase activity" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009693 "ethylene biosynthetic process" evidence=IMP
GO:0050897 "cobalt ion binding" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0019447 "D-cysteine catabolic process" evidence=IDA
TIGR_CMR|SPO_2657 SPO_2657 "ACC deaminase/D-cysteine desulfhydrase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KK38 dcyD "D-cysteine desulfhydrase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P76316 dcyD [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q48PM3 dcyD "D-cysteine desulfhydrase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q81NG1 BAS3005 "Putative pyridoxal phosphate-dependent deaminase" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3236 BA_3236 "pyridoxal phosphate-dependent deaminase, putative" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LL69 cuyA "L-cysteate sulfo-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_A0158 SPO_A0158 "ACC deaminase/D-cysteine desulfhydrase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
POMBASE|SPAC922.03 SPAC922.03 "1-aminocyclopropane-1-carboxylate deaminase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
TIGR01275318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 1e-102
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 4e-80
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 3e-54
COG2515323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 3e-52
PRK14045329 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxyl 6e-46
PRK12390337 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxyl 7e-31
TIGR01274337 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxy 1e-28
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 1e-20
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 1e-11
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information 
 Score =  302 bits (774), Expect = e-102
 Identities = 119/281 (42%), Positives = 148/281 (52%), Gaps = 42/281 (14%)

Query: 40  FSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGM 99
             L   PTPI      +     E+++K                          RDDL+G+
Sbjct: 1   LELIGAPTPIQYLPRLSDYLGREIYIK--------------------------RDDLTGL 34

Query: 100 QLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVL 159
            + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH RA A  A  L L C L+LR     
Sbjct: 35  AMGGNKIRKLEFLLADALRKGADTVITAGAIQSNHARATAAVAAKLGLHCVLLLRNPIGT 94

Query: 160 VDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS 219
             ++  L GNLL++ L GA   + S EEY+ I +      L E+L KEG +PYVIPVGGS
Sbjct: 95  TAENYLLNGNLLLDDLFGAETRIESCEEYTDIDA--QLEELAERLEKEGFKPYVIPVGGS 152

Query: 220 NSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK---- 275
           NS+G  GY+EA  EI QQL+     VKFD IVVA GSGGTIAGLSLG  L  L       
Sbjct: 153 NSLGALGYVEAALEIAQQLE---SEVKFDSIVVASGSGGTIAGLSLG--LSHLMPDVELV 207

Query: 276 ---VHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQN 313
              V  F V D  D F +  Q + +GL   V S  I    +
Sbjct: 208 GVTVSRF-VADQTDKFVNLVQAIAEGLELTV-SAVIPLWDD 246

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7). Length = 318
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|172537 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 341
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 100.0
PRK03910331 D-cysteine desulfhydrase; Validated 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
PLN03013429 cysteine synthase 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
PLN02550 591 threonine dehydratase 100.0
PRK08526 403 threonine dehydratase; Provisional 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
PLN00011323 cysteine synthase 100.0
PRK06352351 threonine synthase; Validated 100.0
PLN02565322 cysteine synthase 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
PLN02970328 serine racemase 100.0
PRK06110322 hypothetical protein; Provisional 100.0
PRK08198 404 threonine dehydratase; Provisional 100.0
PRK06381319 threonine synthase; Validated 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
PRK06382 406 threonine dehydratase; Provisional 100.0
PLN02356423 phosphateglycerate kinase 100.0
KOG1250 457 consensus Threonine/serine dehydratases [Amino aci 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
TIGR02079 409 THD1 threonine dehydratase. This model represents 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
PRK08638333 threonine dehydratase; Validated 100.0
TIGR01127 380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
PRK06721352 threonine synthase; Reviewed 100.0
PRK07591421 threonine synthase; Validated 100.0
PRK07409353 threonine synthase; Validated 100.0
PRK08639 420 threonine dehydratase; Validated 100.0
PRK06815317 hypothetical protein; Provisional 100.0
PRK07334 403 threonine dehydratase; Provisional 100.0
PRK08197394 threonine synthase; Validated 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
PRK06450338 threonine synthase; Validated 100.0
PRK08329347 threonine synthase; Validated 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
PRK06260397 threonine synthase; Validated 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
PRK05638 442 threonine synthase; Validated 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 100.0
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
PRK04346397 tryptophan synthase subunit beta; Validated 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
PRK13028402 tryptophan synthase subunit beta; Provisional 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 100.0
PLN02618410 tryptophan synthase, beta chain 100.0
PRK13802695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 99.98
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 99.98
PLN02569484 threonine synthase 99.97
PRK12391427 tryptophan synthase subunit beta; Reviewed 99.97
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 99.97
KOG1481391 consensus Cysteine synthase [Amino acid transport 99.97
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 99.96
COG0498411 ThrC Threonine synthase [Amino acid transport and 99.89
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 99.85
KOG1395477 consensus Tryptophan synthase beta chain [Amino ac 99.73
PRK09225 462 threonine synthase; Validated 99.62
cd01560 460 Thr-synth_2 Threonine synthase catalyzes the final 99.58
COG1350432 Predicted alternative tryptophan synthase beta-sub 99.55
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 98.94
PRK15408336 autoinducer 2-binding protein lsrB; Provisional 91.18
KOG0780 483 consensus Signal recognition particle, subunit Srp 83.02
COG0300265 DltE Short-chain dehydrogenases of various substra 80.04
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5e-43  Score=326.84  Aligned_cols=232  Identities=41%  Similarity=0.649  Sum_probs=209.2

Q ss_pred             hcCCCCCcccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHH
Q 019410           31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRK  108 (341)
Q Consensus        31 ~~~~~~~~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rk  108 (341)
                      +|+.+|  |+.+...||||++  ++++++  |++||+|                          |||++++.+||||+||
T Consensus         2 ~l~rf~--R~~l~~~pTPiq~--L~rls~~lg~eiYiK--------------------------RDD~t~l~~gGNK~RK   51 (323)
T COG2515           2 NLSRFP--RMELIFGPTPIQK--LPRLSAHLGVEIYIK--------------------------RDDLTGLAFGGNKIRK   51 (323)
T ss_pred             CcccCC--ccccCCCCChhhh--HHHHHHhcCeEEEEE--------------------------cccccccccCccHHHH
Confidence            578899  7889999999999  898888  8999999                          9999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccc
Q 019410          109 LEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEY  188 (341)
Q Consensus       109 l~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~  188 (341)
                      ++|++.+|..+|++++||+||.||||.+++|++|+++|++|++++++..   + ++..++|+.+.+.+|++++.++.+.+
T Consensus        52 Lefll~eal~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~---~-~y~~ngn~Ll~~l~G~~~~~~~~~~d  127 (323)
T COG2515          52 LEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIE---A-NYLLNGNLLLSKLMGAEVRAVDAGTD  127 (323)
T ss_pred             HHHHHhhhhhcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccc---c-ccccccchhhhhhcCceEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999876   2 45568999999999999999997543


Q ss_pred             cccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHh
Q 019410          189 SKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSW  268 (341)
Q Consensus       189 ~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k  268 (341)
                      .  .....++.+++++++++.++|+||.|++|+.+..||..++.||.+|...  . .++|.||+++|||||.||++.++.
T Consensus       128 ~--~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~--~-~~fD~vVva~gs~gT~AGl~~g~~  202 (323)
T COG2515         128 I--GINASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQ--L-LKFDSVVVAPGSGGTHAGLLVGLA  202 (323)
T ss_pred             h--hhchhhHHHHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhh--c-cCCCEEEEeCCCcchHHHHHHHhh
Confidence            2  1234557778888888889999999999999999999999999999973  1 579999999999999999999999


Q ss_pred             cCCCCCeEEEEeeCCCCccchHhHHHHhhcccC
Q 019410          269 LGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA  301 (341)
Q Consensus       269 ~~~~~~rVigVe~~g~~~~~~~~i~~l~~~~~~  301 (341)
                      ..+++++||||.+.++++++.+++..|.+..+.
T Consensus       203 ~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~  235 (323)
T COG2515         203 QLGPDVEVIGIDVSADPEKLKEQVLNLAQATAE  235 (323)
T ss_pred             hccCCCceEEEeecCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887443

>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15408 autoinducer 2-binding protein lsrB; Provisional Back     alignment and domain information
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
1j0a_A325 Crystal Structure Analysis Of The Acc Deaminase Hom 3e-36
4d96_A342 D-Cysteine Desulfhydrase From Salmonella Typhimuriu 3e-28
4d97_A346 Salmonella Typhimurium D-Cysteine Desulfhydrase Wit 1e-27
4d8t_A342 Crystal Structure Of D-Cysteine Desulfhydrase From 1e-27
1rqx_A338 Crystal Structure Of Acc Deaminase Complexed With I 4e-21
1j0e_A341 Acc Deaminase Mutant Reacton Intermediate Length = 5e-17
1f2d_A341 1-Aminocyclopropane-1-Carboxylate Deaminase Length 5e-17
1j0c_A341 Acc Deaminase Mutated To Catalytic Residue Length = 2e-16
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue Length = 325 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/176 (44%), Positives = 116/176 (65%), Gaps = 14/176 (7%)
Query: 91  LQRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCY 150
           ++RDDL+G+ + GNK+RKLE+L+ DA+++GAD +IT+G + SNH     +AAK L LD  
Sbjct: 40  IKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAI 99
Query: 151 LILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRR 210
           L+LR  + L        GN L+++++G    +   ++  ++  +     + E+L +EGR+
Sbjct: 100 LVLRGKEELK-------GNYLLDKIMGIETRVYDAKDSFEL--MKYAEEIAEELKREGRK 150
Query: 211 PYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 266
           PYVIP GG++ IGT GY+ A+ EI  Q +     VKFD IVVA GSGGT+AGLSLG
Sbjct: 151 PYVIPPGGASPIGTLGYVRAVGEIATQSE-----VKFDSIVVAAGSGGTLAGLSLG 201
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium Complexed With 1- Amino-1-Carboxycyclopropane (Acc) Length = 342 Back     alignment and structure
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser Bound At Active Site Length = 346 Back     alignment and structure
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From Salmonella Typhimurium At 2.2 A Resolution Length = 342 Back     alignment and structure
>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With Inhibitor Length = 338 Back     alignment and structure
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate Length = 341 Back     alignment and structure
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase Length = 341 Back     alignment and structure
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 3e-67
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 9e-64
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 5e-59
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 1e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
 Score =  213 bits (545), Expect = 3e-67
 Identities = 73/289 (25%), Positives = 112/289 (38%), Gaps = 34/289 (11%)

Query: 31  HLAPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYV 88
           +L   P +   L   PTPI        +L     ++ K                      
Sbjct: 2   NLQRFPRY--PLTFGPTPIQPLARLSKHLGGKVHLYAK---------------------- 37

Query: 89  LLLQRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNL 147
               R+D  SG+   GNK RKLE+L+ +A+AQG D +++IGGIQSN  R  A  A +L +
Sbjct: 38  ----REDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGM 93

Query: 148 DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKE 207
            C L+        D     +GN+ + R++GA + L+   +   IG         E +   
Sbjct: 94  KCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLV--PDGFDIGFRRSWEDALESVRAA 151

Query: 208 GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGS 267
           G +PY IP G S+            E  +  Q    G KFD +VV   +G T AG+ +G 
Sbjct: 152 GGKPYAIPAGCSDHPLGGLGFVGFAEEVRA-QEAELGFKFDYVVVCSVTGSTQAGMVVGF 210

Query: 268 WLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSV 316
                  +V        P    +    +       V     +   +V +
Sbjct: 211 AADGRADRVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
1x1q_A418 Tryptophan synthase beta chain; structural genomic 100.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 99.98
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 99.97
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 99.97
1vb3_A428 Threonine synthase; PLP-dependent enzyme, lyase; H 99.93
4f4f_A 468 Threonine synthase; structural genomics, niaid, na 99.87
1kl7_A 514 Threonine synthase; threonine synthesis, pyridoxal 99.86
3v7n_A 487 Threonine synthase; ssgcid, structural genomics, s 99.84
3d02_A303 Putative LACI-type transcriptional regulator; peri 86.78
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 86.2
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 84.91
8abp_A306 L-arabinose-binding protein; binding proteins; HET 84.66
3gbv_A304 Putative LACI-family transcriptional regulator; NY 84.16
4fs3_A256 Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; 83.13
4fn4_A254 Short chain dehydrogenase; NADH-binding, rossmann 82.5
3m9w_A313 D-xylose-binding periplasmic protein; xylose bindi 81.94
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
Probab=100.00  E-value=2e-46  Score=360.42  Aligned_cols=256  Identities=38%  Similarity=0.597  Sum_probs=214.7

Q ss_pred             CCCCchhhcCCCCCcccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCC
Q 019410           24 APPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQL  101 (341)
Q Consensus        24 ~~p~~~~~~~~~~~~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~  101 (341)
                      +||+|++.|..++  ++.+.+++|||++  +++|++  |++||+|                          |||++++.+
T Consensus         1 ~~~~~~~~l~~~~--~i~~~~~~TPL~~--~~~l~~~~g~~i~~K--------------------------~E~~~p~~~   50 (325)
T 1j0a_A            1 MHPKIFALLAKFP--RVELIPWETPIQY--LPNISREIGADVYIK--------------------------RDDLTGLGI   50 (325)
T ss_dssp             CCHHHHHHHTTCC--CCCCCCSCCCEEE--CHHHHHHHTSEEEEE--------------------------EGGGSCSTT
T ss_pred             CCchhhhhhccCC--CcccccCCCCceE--hhhhhhhhCCEEEEE--------------------------ecccCCCCC
Confidence            6999999999999  7899999999999  677765  8899999                          889876557


Q ss_pred             CchHhHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC-CCcCCCCCcchhHHHHHhCCCEE
Q 019410          102 SGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK-VLVDQDPGLIGNLLVERLVGAHI  180 (341)
Q Consensus       102 ggnK~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~-~~~~~~~~~~gn~~~~~~~GAeV  180 (341)
                      ||||+|++.+++.+|+++|.++||++|+|+||||+|+|++|+++|++|++|||..+ +        ..|+.++++|||+|
T Consensus        51 gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~--------~~k~~~~~~~GA~v  122 (325)
T 1j0a_A           51 GGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEEL--------KGNYLLDKIMGIET  122 (325)
T ss_dssp             CSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCS--------CHHHHHHHHTTCEE
T ss_pred             CchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCC--------CchHHHHHHCCCEE
Confidence            99999999999999999999999999889999999999999999999999999877 4        46899999999999


Q ss_pred             EEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHH
Q 019410          181 ELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI  260 (341)
Q Consensus       181 ~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~  260 (341)
                      ++++.. ++.. ..+...+.+++++++++..|++|+|+.|+.+.+||.+++.||++|+.     ..+|+||+|+|||||+
T Consensus       123 ~~~~~~-~~~~-~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~~~g~~t~~~Ei~~q~~-----~~~d~vv~~vGtGGt~  195 (325)
T 1j0a_A          123 RVYDAK-DSFE-LMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSE-----VKFDSIVVAAGSGGTL  195 (325)
T ss_dssp             EEESCC-STTT-HHHHHHHHHHHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHCC-----CCCSEEEEEESSSHHH
T ss_pred             EEeCcc-hhhh-hhHHHHHHHHHHHHcCCceEEEcCCCCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeCCchHhH
Confidence            999874 3210 00112344566666554568999999999999999999999999984     4699999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCccchHhHHHHhhc----cc-CC-C-------CCCceEEeccchHHHHHHHHHH
Q 019410          261 AGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDG----LN-AG-V-------DSRDIVNIQNVSVYMTFKNILM  325 (341)
Q Consensus       261 aGl~~~~k~~~~~~rVigVe~~g~~~~~~~~i~~l~~~----~~-~~-~-------~~~~iv~v~d~~~~~~~~~~~~  325 (341)
                      +|++.++|+.++++|||||++.++..+....+..+.++    ++ +. +       ..++ +.|+|.+++.+++.++.
T Consensus       196 ~Gi~~~lk~~~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~  272 (325)
T 1j0a_A          196 AGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGE-YGKITGEVAQIIRKVGT  272 (325)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTS-TTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHhcCCCCCCCcEEecCcccC-CCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999987766555444333    22 11 1       3567 99999999999888864
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Back     alignment and structure
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A Back     alignment and structure
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 341
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 3e-18
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 3e-16
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 1e-13
d1v8za1386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 4e-04
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 82.0 bits (201), Expect = 3e-18
 Identities = 67/274 (24%), Positives = 104/274 (37%), Gaps = 34/274 (12%)

Query: 31  HLAPIPSHVFSLGHFPTPIHKWNL--PNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYV 88
           +L   P +   L   PTPI        +L     ++ K                      
Sbjct: 2   NLQRFPRY--PLTFGPTPIQPLARLSKHLGGKVHLYAK---------------------- 37

Query: 89  LLLQRDDLS-GMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNL 147
               R+D + G+   GNK RKLE+L+ +A+AQG D +++IGGIQSN  R  A  A +L +
Sbjct: 38  ----REDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGM 93

Query: 148 DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKE 207
            C L+        D     +GN+ + R++    ++    +   IG         E +   
Sbjct: 94  KCVLVQENWVNYSDAVYDRVGNIQMSRIL--GADVRLVPDGFDIGFRRSWEDALESVRAA 151

Query: 208 GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGS 267
           G +PY IP G S+            E  +  Q    G KFD +VV   +G T AG+ +G 
Sbjct: 152 GGKPYAIPAGCSDHPLGGLGFVGFAEEVRA-QEAELGFKFDYVVVCSVTGSTQAGMVVGF 210

Query: 268 WLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA 301
                  +V        P    +    +      
Sbjct: 211 AADGRADRVIGVDASAKPAQTREQITRIARQTAE 244
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 100.0
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 100.0
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 99.97
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 99.96
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 99.96
d1e5xa_477 Threonine synthase {Mouse-ear cress (Arabidopsis t 99.95
d1vb3a1428 Threonine synthase {Escherichia coli [TaxId: 562]} 99.05
d1kl7a_ 511 Threonine synthase {Baker's yeast (Saccharomyces c 96.63
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 92.23
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 89.43
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 87.88
d1iz0a2171 Quinone oxidoreductase {Thermus thermophilus [TaxI 87.82
d1wmaa1275 Carbonyl reductase/20beta-hydroxysteroid dehydroge 86.82
d1piwa2168 Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas 86.59
d1o89a2177 Hypothetical protein YhdH {Escherichia coli [TaxId 85.92
d1fmca_255 7-alpha-hydroxysteroid dehydrogenase {Escherichia 85.29
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 84.93
d1yb1a_244 17-beta-hydroxysteroid dehydrogenase type XI {Huma 84.66
d1zema1260 Xylitol dehydrogenase {Gluconobacter oxydans [TaxI 84.48
d1o8ca277 Hypothetical protein YhdH {Escherichia coli [TaxId 83.95
d1uufa2168 Hypothetical protein YahK {Escherichia coli [TaxId 83.8
d1g0oa_272 1,3,8-trihydroxynaphtalene reductase (THNR, naphto 83.63
d1ae1a_258 Tropinone reductase {Jimsonweed (Datura stramonium 83.43
d1gega_255 meso-2,3-butanediol dehydrogenase {Klebsiella pneu 82.8
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 82.79
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 82.74
d1geea_261 Glucose dehydrogenase {Bacillus megaterium [TaxId: 82.63
d2rhca1257 beta-keto acyl carrier protein reductase {Streptom 81.99
d1gu7a2189 2,4-dienoyl-CoA reductase {Yeast (Candida tropical 80.76
d1xq1a_259 Tropinone reductase {Thale cress (Arabidopsis thal 80.53
d2ae2a_259 Tropinone reductase {Jimsonweed (Datura stramonium 80.24
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=293.73  Aligned_cols=239  Identities=18%  Similarity=0.147  Sum_probs=175.5

Q ss_pred             ccccCcCCCcccccCCCCCCC--C--ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHH
Q 019410           39 VFSLGHFPTPIHKWNLPNLPH--N--TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMA  114 (341)
Q Consensus        39 ~~~~~~~~TPl~~~~l~~L~~--g--~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~  114 (341)
                      .+...+++|||++  +++|++  |  ++||+|       +|++||                     +||||+|++.+++.
T Consensus        37 ~i~~~IG~TPLv~--l~~ls~~~G~~~~i~~K-------~E~~np---------------------tGSfKdRga~~~i~   86 (355)
T d1jbqa_          37 DILKKIGDTPMVR--INKIGKKFGLKCELLAK-------CEFFNA---------------------GGSVKDRISLRMIE   86 (355)
T ss_dssp             SGGGGSSCCCEEE--CCSHHHHTTCCSEEEEE-------EGGGST---------------------TSBTHHHHHHHHHH
T ss_pred             cHHHhcCCCCcEE--CcchhHHhCCCCEEEEE-------ECCCCC---------------------ccCHHHHHHHHHHH
Confidence            4455679999999  788766  4  699999       555555                     46779999999999


Q ss_pred             HHHHcC----CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCcc-cc
Q 019410          115 DAVAQG----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE-YS  189 (341)
Q Consensus       115 ~A~~~g----~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~-~~  189 (341)
                      +|.+.|    .++||+  +|+||||+|+|++|+++|++|+||||..++        ..|++.+++|||+|+.++... +.
T Consensus        87 ~a~~~g~~~~~~~vv~--aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~--------~~k~~~i~~~GA~vv~v~~~~~~~  156 (355)
T d1jbqa_          87 DAERDGTLKPGDTIIE--PTSGNTGIGLALAAAVRGYRCIIVMPEKMS--------SEKVDVLRALGAEIVRTPTNARFD  156 (355)
T ss_dssp             HHHHHTCSCTTCEEEE--ECSSHHHHHHHHHHHHHTCEEEEEECSCCC--------HHHHHHHHHTTCEEEECCC-----
T ss_pred             HHHHcCCcccCceEEE--ecccchhhHHHHHHHhccCCeEEEeeccch--------HHHHHHHHhcCCeEEEecccccch
Confidence            999987    367776  456999999999999999999999999885        457999999999999987532 11


Q ss_pred             ccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhc
Q 019410          190 KIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL  269 (341)
Q Consensus       190 ~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~  269 (341)
                      .. . ..... ..++..+.+..++.+....++....||.|++.||++|++     .++|+||+|+|+||+++|++.+++.
T Consensus       157 ~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~-----~~~d~vv~~vG~GG~~~Gi~~~lk~  228 (355)
T d1jbqa_         157 SP-E-SHVGV-AWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCD-----GKLDMLVASVGTGGTITGIARKLKE  228 (355)
T ss_dssp             ---C-CHHHH-HHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHT-----TCCCEEEEECSSSHHHHHHHHHHHH
T ss_pred             hh-h-hhhhH-HHHHHHhccccccccccCcccchhhhcccchhhhhhhcC-----CCCCeeEecccCCchHHHHHHHHhh
Confidence            11 1 11122 222333333445444433344456799999999999996     3699999999999999999999999


Q ss_pred             CCCCCeEEEEeeCCCCccchHh----------HHHHhhcccCCC----CCCceEEeccchHHHHHHHHHH
Q 019410          270 GTLKAKVHAFSVCDDPDYFYDY----------TQGLLDGLNAGV----DSRDIVNIQNVSVYMTFKNILM  325 (341)
Q Consensus       270 ~~~~~rVigVe~~g~~~~~~~~----------i~~l~~~~~~~~----~~~~iv~v~d~~~~~~~~~~~~  325 (341)
                      .++.++|++|++.++..+....          +.++..+....+    ..++++.|.|.+++.+.+.++.
T Consensus       229 ~~~~~kii~vep~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~  298 (355)
T d1jbqa_         229 KCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIA  298 (355)
T ss_dssp             HCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHH
T ss_pred             cCCcceEEeecccCCcccccccccccccccccccccccccchhhhhhhheeeeccCCHHHHHHHHHHHHH
Confidence            9999999999999886543221          111222211111    3578999999999888777653
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Back     information, alignment and structure
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Back     information, alignment and structure
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Back     information, alignment and structure