Citrus Sinensis ID: 019440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHcccEEEEEEEccEEEEEEEcccccccccEEEEEEEEEEEEEcEEEEccccccccccccEEEEEEcccccEEEEEcccEEEEEEcEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHHEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccc
Coil and Loop (DISEMBL)
mdrrdglalpgsasfymqrgmtgsgsgtqpslhgspgihplsnpslqfqsniggstigstlsvdpssaisphgvnvtasasmpqsepvkrkrgrprkygpdgsvslalspsvsthpgtisptqkrgrgrppgtgrkqQVSSlgeslsgsagmgftphVITVAVGEDIAMKLLSFSQQGPRAICVLSangaistatlrqpsssggsvtyeGRFEILCLSgsyllsgnggsrnrsgglsvslaspdgrvigggVGGMLIAANNVQVIVGSflwggpkmknkkgeasegvrdsehqsvenpvtpttapssqnltptssvggvwagsrqmdmmRNAHVDIDLMRG
Flexible Loop (DISEMBL)
mdrrdglalpgSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGvnvtasasmpqsepvkrkrgrprkygpdgsvslalspsvsthpgtisptqkrgrgrppgTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIStatlrqpsssggsVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEAsegvrdsehqsvenpvtpttapssqnltptSSVGGVWAGSRQMDMMRNAHVDIDLMRG
Low Complexity Region (SEG)
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEpvkrkrgrprkygpdgSVSLALSPSVSTHPGTISptqkrgrgrppgtgrkqqVsslgeslsgsAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEIlclsgsyllsgnggsrnrsgglsvslASPDgrvigggvggMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTA***********VTYEGRFEILCLSGSYLLSG******************DGRVIGGGVGGMLIAANNVQVIVGSFLWGG********************************************************************
Disordered Region (DISOPRED)
********************************************************************************************************************************************************GFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYL************GLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFL*******************************************************************L***
Disordered Region (DISEMBL)
********LPGSASFYMQRGM*************SPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVT**************************VSLALSP*************************************GSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTAT**********VTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPK***************************************SVGGVWAGSRQMDMMRNAHVDIDLMRG
Disordered Region (DISPRO)
**************FY**RGMTGSGSGTQPSLHGSPGIHPLSNPSLQ*******************************************************SVSL******************************QQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGP*******************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.410	0.450	0.374	7e-08

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 15/155 (9%)

Query: 124 KRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAIC 183
           KR RGRPPG+  K +   +    S +A      HV+ V+ G DI   + +++++  R + 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNA---LRSHVLEVSPGADIVESVSTYARRRGRGVS 142

Query: 184 VLSANGAISTATLRQPSS---------SGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSG 234
           VL  NG +S  TLRQP +          GG VT  GRFEIL L+G+ L      +   +G
Sbjct: 143 VLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPP---PAPPGAG 199

Query: 235 GLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSF 269
           GLS+ LA   G+V+GG V   LIA+  V ++  SF
Sbjct: 200 GLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
255541558	340	DNA binding protein, putative [Ricinus c	0.994	0.997	0.789	1e-143
133907524	340	AT-hook DNA-binding protein [Gossypium h	0.994	0.997	0.733	1e-134
225454180	345	PREDICTED: uncharacterized protein LOC10	0.994	0.982	0.769	1e-131
224130232	336	predicted protein [Populus trichocarpa]	0.979	0.994	0.749	1e-126
224067876	328	predicted protein [Populus trichocarpa]	0.961	1.0	0.709	1e-121
358249184	341	uncharacterized protein LOC100814615 [Gl	0.982	0.982	0.685	1e-115
356568374	342	PREDICTED: uncharacterized protein LOC10	0.982	0.979	0.672	1e-112
449441474	334	PREDICTED: uncharacterized protein LOC10	0.973	0.994	0.661	1e-110
449518609	334	PREDICTED: uncharacterized LOC101203138	0.973	0.994	0.658	1e-110
356504535	340	PREDICTED: uncharacterized protein LOC10	0.988	0.991	0.656	1e-109

>gi|255541558|ref|XP_002511843.1| DNA binding protein, putative [Ricinus communis] gi|223549023|gb|EEF50512.1| DNA binding protein, putative [Ricinus communis]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/342 (78%), Positives = 308/342 (90%), Gaps = 3/342 (0%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +A+ GSASFYMQRGMTGSGSGTQ  L+ S GI+PL++ ++ FQSN+G +TIGST
Sbjct: 1   MDRRDAMAMSGSASFYMQRGMTGSGSGTQSGLNVSSGINPLTSTNVSFQSNVGANTIGST 60

Query: 61  LSVDPSSAISPHGVNVTASASMPQ-SEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           L ++ S+AI PHGVNV AS+ MP   EPVKRKRGRPRKYGPDG+VSLALSPS+STHPGTI
Sbjct: 61  LPLETSTAIPPHGVNVGASSLMPPPGEPVKRKRGRPRKYGPDGTVSLALSPSLSTHPGTI 120

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +PTQKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGP
Sbjct: 121 TPTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGP 180

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVS 239
           RAIC+LSANGA+ST TLRQPS+SGGSVTYEGRFEILCLSGSYL++ NGGSRNR+GGLSVS
Sbjct: 181 RAICILSANGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLVTSNGGSRNRTGGLSVS 240

Query: 240 LASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENPV 299
           LASPDGRVIGGGVGGMLIAA+ VQVIVGSFLWGG K KNKKGE  EG RDS+HQ+VENPV
Sbjct: 241 LASPDGRVIGGGVGGMLIAASPVQVIVGSFLWGGSKAKNKKGEGPEGARDSDHQTVENPV 300

Query: 300 TPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           TP++ P SQNLTPTSS+ G+W GS+ +D MRN HVDIDLMRG
Sbjct: 301 TPSSVPPSQNLTPTSSI-GLWPGSQSLD-MRNTHVDIDLMRG 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133907524|gb|ABO42262.1| AT-hook DNA-binding protein [Gossypium hirsutum]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/342 (73%), Positives = 292/342 (85%), Gaps = 3/342 (0%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDRRD +AL GSAS+YMQ RG+TGSGSGTQ  +HGSPGIHPLS+P++Q+QS+I  +T+G+
Sbjct: 1   MDRRDAMALSGSASYYMQQRGITGSGSGTQSGVHGSPGIHPLSSPNVQYQSSISATTMGA 60

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           TL V+P S I+PH VNV    ++   E VKRKRGRPRKYGPDG+VSLAL+P+ +THPGTI
Sbjct: 61  TLPVEPLSGITPHNVNVGTPPAVQPGETVKRKRGRPRKYGPDGTVSLALTPASATHPGTI 120

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +P QKRGRGRPPGTGRKQQ+SSLGE LSGSAGMGFTPHVIT+A+GEDIA KL+SFSQQGP
Sbjct: 121 TPIQKRGRGRPPGTGRKQQLSSLGELLSGSAGMGFTPHVITIAIGEDIATKLMSFSQQGP 180

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVS 239
           R +C+LSANGA+ST TLR+PSSSGG+VTYEGRFEILCLSGSYLL+ N GSRNR+GGLSVS
Sbjct: 181 REVCILSANGAVSTVTLRKPSSSGGTVTYEGRFEILCLSGSYLLTSNTGSRNRTGGLSVS 240

Query: 240 LASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENPV 299
           LASPDGR IGGGVGGMLIAA+ VQVIVGSF+WGG K KNKKG   EG++DS+ Q V+N V
Sbjct: 241 LASPDGRAIGGGVGGMLIAASPVQVIVGSFIWGGSKAKNKKG-GQEGIKDSDDQMVDNLV 299

Query: 300 TPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
            P     SQN+TP S+  GVW GSR MDM  N+HVDIDLMRG
Sbjct: 300 APPGISPSQNMTP-SAPAGVWPGSRSMDMRNNSHVDIDLMRG 340

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454180|ref|XP_002272142.1| PREDICTED: uncharacterized protein LOC100265498 [Vitis vinifera] gi|297745264|emb|CBI40344.3| unnamed protein product [Vitis vinifera]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/347 (76%), Positives = 302/347 (87%), Gaps = 8/347 (2%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGT--QPSLHGSPGIHPLSNPSLQFQSNIGGS-TI 57
           MDRRD +A+PGS S+YMQRGM GSGSG+  QP LHGSPGI  LSNPS+ FQ NIGG  ++
Sbjct: 1   MDRRDAMAMPGSGSYYMQRGMAGSGSGSGPQPGLHGSPGIRSLSNPSMPFQPNIGGGGSM 60

Query: 58  GSTLSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHP 116
           GSTL V+PSS IS HGVNV A S  +P SEPVKRKRGRPRKYGPDG+VSLALSPS +T P
Sbjct: 61  GSTLPVEPSSVISTHGVNVGAPSTLLPPSEPVKRKRGRPRKYGPDGTVSLALSPSSATSP 120

Query: 117 GTISP-TQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFS 175
           GT++  TQKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPHVITVAVGED+A K++SFS
Sbjct: 121 GTLTASTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHVITVAVGEDVATKIMSFS 180

Query: 176 QQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGG 235
           QQGPRAIC+LSANGA+ST TLRQPS+SGG+VTYEGRFEILCLSGSYLL+ NGGSRNR+GG
Sbjct: 181 QQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDNGGSRNRTGG 240

Query: 236 LSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSV 295
           LSVSLASPDGRVIGGGVGGML AA+ VQVIVGSF+WG  K KNK GE+ EG  DSE Q+V
Sbjct: 241 LSVSLASPDGRVIGGGVGGMLTAASPVQVIVGSFIWGNSKTKNKMGESVEGAGDSERQTV 300

Query: 296 ENPV-TPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           ++P+ TPTT P+SQNLTP SS+ GVW GSRQ+D MRN+ VDIDLMRG
Sbjct: 301 DHPITTPTTVPASQNLTPASSM-GVWPGSRQLD-MRNSPVDIDLMRG 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130232|ref|XP_002320785.1| predicted protein [Populus trichocarpa] gi|222861558|gb|EEE99100.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/343 (74%), Positives = 296/343 (86%), Gaps = 9/343 (2%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +A+ GSASFYM RG+T SGS     ++ S  I+ LSN ++ FQ NIG +T+GST
Sbjct: 1   MDRRDAMAISGSASFYMHRGITSSGS-----MNVSSNINTLSNTNVAFQPNIGANTMGST 55

Query: 61  LSVDPSSAISPHGVNVTASASMPQS-EPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           L ++   AISPHGVNV   ++MP S EPVKRKRGRPRKYGPDG+VSLALS S+STHPGTI
Sbjct: 56  LPMEHPVAISPHGVNVGVPSTMPPSGEPVKRKRGRPRKYGPDGAVSLALSSSLSTHPGTI 115

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +P+QKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGP
Sbjct: 116 TPSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGP 175

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVS 239
           RA+C+LSANGA+ST TLRQPS+SGG+VTYEGRFEILCLSGSYLL+ +GGSRNRSGGLSVS
Sbjct: 176 RAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTNDGGSRNRSGGLSVS 235

Query: 240 LASPDGRVIGGGVGGMLIAANNVQVIVGSFLW-GGPKMKNKKGEASEGVRDSEHQSVENP 298
           LASPDGRVIGGGVGG+LIAA+ VQVIVGSFLW GG K KNKK E  EG RDS+HQ+VENP
Sbjct: 236 LASPDGRVIGGGVGGVLIAASPVQVIVGSFLWGGGSKTKNKKVEGPEGARDSDHQTVENP 295

Query: 299 VTPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           VTPT+   SQNLTPTSS+ GVW GSR +D MR+ HVDIDLMRG
Sbjct: 296 VTPTSVQPSQNLTPTSSM-GVWPGSRPVD-MRSTHVDIDLMRG 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067876|ref|XP_002302577.1| predicted protein [Populus trichocarpa] gi|222844303|gb|EEE81850.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/341 (70%), Positives = 280/341 (82%), Gaps = 13/341 (3%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD + + GSASF+MQ      GSGT PSL+ S GI+ LSN +  FQ N+G +T+GS 
Sbjct: 1   MDRRDTMTISGSASFFMQ------GSGTHPSLNVSSGINTLSNINAPFQPNMGANTMGSA 54

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
           L ++  +AIS     V   ++M   +P KRKRGRPRKYGPDG+VSLALSPS+STHP T  
Sbjct: 55  LLMEHPAAIS-----VGELSTMVSGQPEKRKRGRPRKYGPDGAVSLALSPSLSTHPETSI 109

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
           P+QKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGPR
Sbjct: 110 PSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPR 169

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSL 240
           AIC+LSANGA+ST TL QPS+SGG+VTYEGRFEILCLSGSYL S +GGSRNR+GGLSVSL
Sbjct: 170 AICILSANGAVSTVTLHQPSTSGGTVTYEGRFEILCLSGSYLFSNDGGSRNRTGGLSVSL 229

Query: 241 ASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENPVT 300
           ASPDG VIGGGVGG+LIAA+ VQVI GSFLWGG K KNKK E +E  RDS+HQ+VENPVT
Sbjct: 230 ASPDGCVIGGGVGGVLIAASPVQVIAGSFLWGGSKTKNKKVEGAEVARDSDHQTVENPVT 289

Query: 301 PTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           PT+   S NLTPTSS+ GVW GSR +D MRN HVDIDLMRG
Sbjct: 290 PTSVQPSLNLTPTSSM-GVWPGSRSVD-MRNTHVDIDLMRG 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249184|ref|NP_001239751.1| uncharacterized protein LOC100814615 [Glycine max] gi|255636132|gb|ACU18409.1| unknown [Glycine max]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/347 (68%), Positives = 282/347 (81%), Gaps = 12/347 (3%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDR D +AL GS  +YMQ RG+ GSG   QP LH SP + PLSNP+L FQS+IGG TIGS
Sbjct: 1   MDRGDQMALSGS--YYMQQRGIPGSGG--QPELHISPNMRPLSNPNLPFQSSIGGGTIGS 56

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPS--VSTHPG 117
           TL ++ SSAIS HGVNV A    P  EPVKRKRGRPRKYG DGSVSLAL+P+   S+HPG
Sbjct: 57  TLPLE-SSAISAHGVNVGAPTGAPLGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSHPG 115

Query: 118 TISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ 177
            +S +QKRGRGRPPGTG+KQQ++SLGE +SGSAGMGFTPH+I +A GEDIA K+++FSQQ
Sbjct: 116 ALSQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQ 175

Query: 178 GPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLS 237
           GPR +C+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSYL++ NGGSRNR+GGLS
Sbjct: 176 GPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTENGGSRNRTGGLS 235

Query: 238 VSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVR---DSEHQS 294
           VSLASPDGRVIGGGVGG+LIA++ VQV+VGSFLWGG K KNKK E+SEG     +S+HQ 
Sbjct: 236 VSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGAEVAVESDHQG 295

Query: 295 VENPVTPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           V NPV+  +   +QNL PT      W+ SR +D MRN+HVDIDLMRG
Sbjct: 296 VHNPVSLNSISQNQNLPPTPPSLSPWSTSRPLD-MRNSHVDIDLMRG 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568374|ref|XP_003552386.1| PREDICTED: uncharacterized protein LOC100802542 isoform 1 [Glycine max] gi|356568376|ref|XP_003552387.1| PREDICTED: uncharacterized protein LOC100802542 isoform 2 [Glycine max]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/348 (67%), Positives = 283/348 (81%), Gaps = 13/348 (3%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDR D +AL  S S+YMQ RG+ GSG+   P LH SP + P+SNP+L FQS+IGG TIGS
Sbjct: 1   MDRGDQMAL--SGSYYMQQRGIPGSGA--PPELHISPNMRPISNPNLPFQSSIGGGTIGS 56

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPS--VSTHPG 117
           TL ++ SSAIS HGVNV A    P  EPVKRKRGRPRKYG DGSVSLAL+P+   S++PG
Sbjct: 57  TLPLE-SSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSYPG 115

Query: 118 TISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ 177
            ++ +QKRGRGRPPGTG+KQQ++SLGE +SGSAGMGFTPH+I +A GEDI  K+++FSQQ
Sbjct: 116 ALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDITTKIMAFSQQ 175

Query: 178 GPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLS 237
           G RA+C+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSYL++ NGGSRNR+GGLS
Sbjct: 176 GARAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLS 235

Query: 238 VSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVR---DSEHQS 294
           VSLASPDGRVIGGGVGG+LIA++ VQV+VGSFLWGG K KNKK E+SEG     +S+HQ 
Sbjct: 236 VSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGSEVAVESDHQG 295

Query: 295 VENPVTPTTAPS-SQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           V NPV+  ++ S +QNL PT      W+ SR +D MRN+HVDIDLMRG
Sbjct: 296 VHNPVSLNSSISPNQNLPPTPPSLNPWSTSRPLD-MRNSHVDIDLMRG 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441474|ref|XP_004138507.1| PREDICTED: uncharacterized protein LOC101203138 [Cucumis sativus]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/343 (66%), Positives = 275/343 (80%), Gaps = 11/343 (3%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +AL GS SFYMQRG++ SGSG Q       G+   +NP++ FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQ-------GLRSSTNPNVAFQTNTGGNNVGSG 53

Query: 61  LSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVS-THPGT 118
           L +DP+S ISP+G NV A S  +  SEPVKRKRGRPRKYG +G+VSLALSPS S  +P T
Sbjct: 54  LPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAT 113

Query: 119 ISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQG 178
           ++ + KRGRGRPPG+G+KQQ++SL E+LSGSAGMGFTPHVIT+ +GED+A K++SFSQQG
Sbjct: 114 VASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQG 173

Query: 179 PRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSV 238
           PR +C+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSY L    GSRNR+GGLSV
Sbjct: 174 PRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEIAGSRNRTGGLSV 233

Query: 239 SLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENP 298
           SLASPDGRVIGGGVGG L+AA  VQVIVGSF+WG  K K KK EA EGV DS+HQSV++ 
Sbjct: 234 SLASPDGRVIGGGVGGALVAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQSVDHA 293

Query: 299 VTPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           V   +   +QNLTPTSSV  +W  S+ +D MRNAH+DIDLMRG
Sbjct: 294 VAIASVQQNQNLTPTSSV-SMWPSSQSLD-MRNAHIDIDLMRG 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518609|ref|XP_004166329.1| PREDICTED: uncharacterized LOC101203138 [Cucumis sativus]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/343 (65%), Positives = 274/343 (79%), Gaps = 11/343 (3%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +AL GS SFYMQRG++ SGSG Q       G+   +NP++ FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQ-------GLRSSTNPNVAFQTNTGGNNVGSG 53

Query: 61  LSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVS-THPGT 118
           L +DP+S ISP+G NV A S  +  SEPVKRKRGRPRKYG +G+VSLALSPS S  +P T
Sbjct: 54  LPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAT 113

Query: 119 ISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQG 178
           ++ + KRGRGRPPG+G+KQQ++SL E+LSGSAGMGFTPHVIT+ +GED+A K++SFSQQG
Sbjct: 114 VASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQG 173

Query: 179 PRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSV 238
           PR +C+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSY L    GSRNR+GGLSV
Sbjct: 174 PRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEIAGSRNRTGGLSV 233

Query: 239 SLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENP 298
           SLASPDGRVIGGGVGG L+AA  VQVIVGSF+WG  K K KK EA EGV DS+HQSV++ 
Sbjct: 234 SLASPDGRVIGGGVGGALVAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQSVDHA 293

Query: 299 VTPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           V   +   +QNL PTSSV  +W  S+ +D MRNAH+DIDLMRG
Sbjct: 294 VAIASVQQNQNLAPTSSV-SMWPSSQSLD-MRNAHIDIDLMRG 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504535|ref|XP_003521051.1| PREDICTED: uncharacterized protein LOC100783475 [Glycine max]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/344 (65%), Positives = 275/344 (79%), Gaps = 7/344 (2%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDR D + LPGSAS+YMQRG+ G+G+  QP LH SP I PLSNP+L  QS+IGG     +
Sbjct: 1   MDRGDQMTLPGSASYYMQRGIPGAGN--QPVLHNSPNIGPLSNPNLPCQSSIGGGGTIGS 58

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
                SS IS   VNV+A +     E VKRKRGRPRKYG DG+VSLAL+P+ ++HPG ++
Sbjct: 59  TLPLESSGISAPCVNVSAPSGTLPGETVKRKRGRPRKYGSDGAVSLALTPTPASHPGALA 118

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
             QKRGRGRPPG+G+KQQ++SLGE +SGSAGMGFTPH+IT+AVGEDIA K++SFSQQGPR
Sbjct: 119 QGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPR 178

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSL 240
           AIC+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSYL++ +GGSRNR+GGLSVSL
Sbjct: 179 AICILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVADSGGSRNRTGGLSVSL 238

Query: 241 ASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKNKKGEASEGVR---DSEHQSVEN 297
           ASPDGRV+GGGVGG+LIAA+ VQVI+GSF WG  K K KK E SEG     +++HQ+V N
Sbjct: 239 ASPDGRVVGGGVGGVLIAASPVQVILGSFSWGASKTKIKKKEGSEGAEVALETDHQTVHN 298

Query: 298 PVTPTTAPSSQNLTPTSSVGGVWAGSRQMDMMRNAHVDIDLMRG 341
           PV   +   +QNLTPTSS+   W  SR +D MRN+H+DIDLMRG
Sbjct: 299 PVAVNSISPNQNLTPTSSL-SPWPASRSLD-MRNSHIDIDLMRG 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.967	0.948	0.417	3e-53
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.979	0.943	0.407	3.1e-51
TAIR|locus:2031306	361	AT1G63480 [Arabidopsis thalian	0.560	0.529	0.376	2.4e-33
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.557	0.502	0.350	4.3e-32
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.454	0.441	0.420	7.7e-31
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.539	0.516	0.408	7.9e-30
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.548	0.588	0.394	3.4e-29
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.516	0.526	0.388	1.2e-26
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.398	0.324	0.411	4.7e-26
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.434	0.383	0.411	2.3e-23

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 150/359 (41%), Positives = 190/359 (52%)

Query:     1 MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSP----GIHPLSNPSLQFQSNIGGST 56
             MDRRD + L GS S+Y+ RG++GSG    P+ HGSP    G+  L N +  F S  G + 
Sbjct:     1 MDRRDAMGLSGSGSYYIHRGLSGSGP---PTFHGSPQQQQGLRHLPNQNSPFGS--GSTG 55

Query:    57 IGS-TLSVDPSSAIS-------PH--GVNVTASASMPQSEXXXXXXXXXXXXXXXXSVSL 106
              GS +L  DPS A +       PH  GVN+ A    P                   SVSL
Sbjct:    56 FGSPSLHGDPSLATAAGGAGALPHHIGVNMIAPPPPPSETPMKRKRGRPRKYGQDGSVSL 115

Query:   107 ALSPS-VSTHPGTISXXXXXXXXXXXXXXXXXXVXXXXXXXXXXAGMGFTPHVITVAVGE 165
             ALS S VST   T +                  +          +GM FTPHVI V++GE
Sbjct:   116 ALSSSSVSTI--TPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTPHVIAVSIGE 173

Query:   166 DIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEIXXXXXXXXXXX 225
             DIA K+++FSQQGPRAICVLSA+GA+STATL QPS+S G++ YEGRFEI           
Sbjct:   174 DIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYEGRFEILALSTSYIVAT 233

Query:   226 XXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSFLWGGPKMKNKKGE--A 283
                            ASPD           LIAA+ VQVIVGSF+W  PK+K+KK E  A
Sbjct:   234 DGSFRNRTGNLSVSLASPDGRVIGGAIGGPLIAASPVQVIVGSFIWAAPKIKSKKREEEA 293

Query:   284 SEGVRDSEHQSVENPVTPTTAPSSQNLTPTSSVGGVWA-GSRQMDMMRNAHVDIDLMRG 341
             SE V++++   V +    T +P  Q   P  ++  +W+ GSRQMDM R+AH DIDLMRG
Sbjct:   294 SEVVQETDDHHVLDNNNNTISPVPQQ-QPNQNL--IWSTGSRQMDM-RHAHADIDLMRG 348

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 147/361 (40%), Positives = 180/361 (49%)

Query:     1 MDRRDGLALPGSASFYMQRGMTGSGSG---TQPSLHGSPGIHPLSNPSLQFQSNI----- 52
             MDRRD +AL GS S+Y+QRG+ GSG     TQP+ HGS G H  +N    F SN      
Sbjct:     1 MDRRDAMALSGSGSYYIQRGIPGSGPPPPQTQPTFHGSQGFHHFTNSISPFGSNPNPNPN 60

Query:    53 -GG-ST--IGSTLSVDPSSAISPHGVNVTASASMPQSEXXXXXXXXX--XXXXXXXSVSL 106
              GG ST  +   L VD S A S       A  + P  +                  SVSL
Sbjct:    61 PGGVSTGFVSPPLPVDSSPADSSAAA-AGALVAPPSGDTSVKRKRGRPRKYGQDGGSVSL 119

Query:   107 ALSPSVSTHPGTISXXXXXXXXXXXXXXXXXXVXXXXXXXXXXAGMGFTPHVITVAVGED 166
             ALSPS+S      +                  +           GM FTPHVI V++GED
Sbjct:   120 ALSPSISNVSPNSNKRGRGRPPGSGKKQRLSSIGEMMPSST---GMSFTPHVIVVSIGED 176

Query:   167 IAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEIXXXXXXXXXXXX 226
             IA K++SFS QGPRAICVLSA+GA+STATL QP+ S G++ YEG FE+            
Sbjct:   177 IASKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYEGLFELISLSTSYLNTTD 236

Query:   227 XXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSFLWGGPKMKNKKGE-ASE 285
                           ASPD           LIAA+ VQVIVGSF+W  PK K KK E  SE
Sbjct:   237 NDYPNRTGSLAVSLASPDGRVIGGGIGGPLIAASQVQVIVGSFIWAIPKGKIKKREETSE 296

Query:   286 GVRDSEHQSVENPVTPTTAP----SSQNLTPTSSVGGVWA-GSRQMDMMRNAHVDIDLMR 340
              V+D++     N  T  T+P     SQN+  T    G+W+ GSR MDM  + H+DIDLMR
Sbjct:   297 DVQDTDALENNNDNTAATSPPVPQQSQNIVQTPV--GIWSTGSRSMDM-HHPHMDIDLMR 353

Query:   341 G 341
             G
Sbjct:   354 G 354

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031306 AT1G63480 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 78/207 (37%), Positives = 102/207 (49%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             AG+ F PHVI++  GEDIA K+LSFSQQ PRA+C++S  G IS+ TL +P S+   +TYE
Sbjct:   156 AGLAFAPHVISIGAGEDIAAKVLSFSQQRPRALCIMSGTGTISSVTLCKPGSTDRHLTYE 215

Query:   210 GRFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSF 269
             G FEI                          + PD          MLIAAN VQV+  SF
Sbjct:   216 GPFEIISFGGSYLVNEEGGSRSRTGGLSVSLSRPDGSIIAGGVD-MLIAANLVQVVACSF 274

Query:   270 LWGG-PKMKNKKGEA--SEGVRDSEHQSVENPVTPTTA--P--SSQNLTPTS-SVGGV-- 319
             ++G   K  N   +    E   + E  + E   TP +A  P  S+   TP + S  G+  
Sbjct:   275 VYGARAKTHNNNNKTIRQEKEPNEEDNNSEMETTPGSAAEPAASAGQQTPQNFSSQGIRG 334

Query:   320 WAGS-----RQMDMMRNAHVDIDLMRG 341
             W GS     R +D+ RN   D DL RG
Sbjct:   335 WPGSGSGSGRSLDICRNPLTDFDLTRG 361

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 73/208 (35%), Positives = 103/208 (49%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             AG+ F PHVI+V  GEDI  K+LSFSQ+ PRA+C++S  G +S+ TLR+P+S+  S+T+E
Sbjct:   173 AGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSVTLREPASTTPSLTFE 232

Query:   210 GRFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSF 269
             GRFEI                          + P+          MLIAA+ VQV+  SF
Sbjct:   233 GRFEILSLGGSYLVNEEGGSKSRTGGLSVSLSGPEGHVIGGGIG-MLIAASLVQVVACSF 291

Query:   270 LWGGPKMKNKKGEAS--EGVRDS-EHQSVENPVTPTTAPSSQNLT--------PTSSVGG 318
             ++G     N     +  + ++   E  + E   TP +AP +   T        P   + G
Sbjct:   292 VYGASAKSNNNNNKTIKQEIKPKQEPTNSEMETTPGSAPEAAASTGQHTPQNFPAQGMSG 351

Query:   319 VW--AGS---RQMDMMRNAHVDIDLMRG 341
              W  +GS   R +D  RN   DIDL RG
Sbjct:   352 -WPVSGSGSGRSLDSSRNPLTDIDLTRG 378

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 69/164 (42%), Positives = 92/164 (56%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEG 210
             G+GFTPHV+TV  GED++ K+++ +  GPRA+CVLSANGAIS  TLRQ ++SGG+VTYEG
Sbjct:   160 GIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEG 219

Query:   211 RFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSFL 270
             RFEI                          +SPD          +LIAA+ VQ++VGSFL
Sbjct:   220 RFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSVAGLLIAASPVQIVVGSFL 279

Query:   271 WGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSSQNLTPTS 314
               G K      E  + V       + +PV P  AP+   +TP+S
Sbjct:   280 PDGEK------EPKQHVGQ---MGLSSPVLPRVAPTQVLMTPSS 314

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 78/191 (40%), Positives = 104/191 (54%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEG 210
             G  FTPH+ITV  GED+ MK++SFSQQGPR+ICVLSANG IS+ TLRQP SSGG++TYEG
Sbjct:   167 GGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYEG 226

Query:   211 RFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSFL 270
             RFEI                          ASPD          +L+AA+ VQV+VGSFL
Sbjct:   227 RFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAASPVQVVVGSFL 286

Query:   271 WGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSSQNLTPTSSV---GGVWAGSRQMD 327
               G   +++K + ++   D    S    +  ++A   + +   SS+      W  S   D
Sbjct:   287 -AGTDHQDQKPKKNK--HDFMLSSPTAAIPISSAADHRTIHSVSSLPVNNNTWQTSLASD 343

Query:   328 MMRNAHVDIDL 338
               RN H DI++
Sbjct:   344 P-RNKHTDINV 353

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 77/195 (39%), Positives = 101/195 (51%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEG 210
             G  FTPHVITV  GEDI M+++SFSQQGPRAIC+LSANG IS  TLRQP S GG++TYEG
Sbjct:   120 GSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEG 179

Query:   211 RFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSFL 270
             RFEI                          A PD          +LIAA  +QV+VGSF+
Sbjct:   180 RFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVGSFI 239

Query:   271 WGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSSQNLTPTS-------SVGGVWAGS 323
                 +   K  +       +   SV  P +P   P++   +PT+       S  G+ + +
Sbjct:   240 TSDQQDHQKPRKQRVEHAPAAVMSVPPPPSPPP-PAASVFSPTNPDREQPPSSFGISSWT 298

Query:   324 RQMDMMRNAHVDIDL 338
                DM RN+  DI++
Sbjct:   299 NGQDMPRNSATDINI 313

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 73/188 (38%), Positives = 100/188 (53%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             A   FTPH+ITV  GED+  +++SFSQQG  AICVL ANG +S+ TLRQP SSGG++TYE
Sbjct:   146 AAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYE 205

Query:   210 GRFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSF 269
             GRFEI                          ASPD          +L+AA  +QV+VG+F
Sbjct:   206 GRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAATPIQVVVGTF 265

Query:   270 LWGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSSQNLT--P-TSSVG-GVWAGSRQ 325
             L GG    N++ +     +   H  + +P+ PT++  + + T  P TSS+    W  S  
Sbjct:   266 L-GGT---NQQEQTP---KPHNHNFMSSPLMPTSSNVADHRTIRPMTSSLPISTWTPSFP 318

Query:   326 MDMMRNAH 333
              D  R+ H
Sbjct:   319 SDS-RHKH 325

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 4.7e-26, Sum P(2) = 4.7e-26
 Identities = 56/136 (41%), Positives = 75/136 (55%)

Query:   154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFE 213
             FTPHV+TV  GED+ MK+++FSQQG RAIC+LSANG IS  TLRQ  +SGG++TYEG FE
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGHFE 237

Query:   214 IXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSFLWGG 273
             I                          A  D          + IAA  VQV+VGSF+ G 
Sbjct:   238 ILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQVMVGSFIAGQ 297

Query:   274 PKMKNKKGEASEGVRD 289
              + + ++ +  +  R+
Sbjct:   298 EESQQQQQQIKKQRRE 313

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 65/158 (41%), Positives = 80/158 (50%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             +G+GFTPHVI V  GEDIA K+++FS QG R IC+LSA+GA+S   LRQ S S G VTYE
Sbjct:   176 SGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSASGAVSRVMLRQASHSSGIVTYE 235

Query:   210 GRFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQVIVGSF 269
             GRFEI                          A PD           L+AA  VQVIVGSF
Sbjct:   236 GRFEIITLSGSVLNYEVNGSTNRSGNLSVALAGPDGGIVGGSVVGNLVAATQVQVIVGSF 295

Query:   270 LWGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSS 307
             +    K K      + G         +NP  P +AP++
Sbjct:   296 VAEAKKPKQSSVNIARG---------QNP-EPASAPAN 323

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	4e-36
cd11378	113	cd11378, DUF296, Domain of unknown function found	7e-31
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	0.001

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  126 bits (319), Expect = 4e-36
 Identities = 54/123 (43%), Positives = 66/123 (53%), Gaps = 9/123 (7%)

Query: 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPS---SSGGSVTYEG 210
             PHV+ +  GED+   L +F++Q      VLS  GA+S  TLRQP     S G VT EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 211 RFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGV-GGMLIAANNVQVIVGSF 269
           RFEIL LSG+    G       SG L VSLA PDG+V+GG +  G + A   V V   SF
Sbjct: 61  RFEILSLSGTISPGG-----KPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 270 LWG 272
              
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  112 bits (283), Expect = 7e-31
 Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 8/118 (6%)

Query: 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSS---SGGSVTYEGR 211
            P V+ +  GED+   L +F+++      VLS  GA+S ATLR P        +VT+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 212 FEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSF 269
            EIL LSG+            SG L VSLA  DGRVIGG + G L+A   V+V++G  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALVAG-TVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 157 HVITVAV--GEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYEGR 211
            VI + +  GED+  +L +F++Q      V++A GA+  A LR          ++     
Sbjct: 10  RVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEP 69

Query: 212 FEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGG 250
            E+L L G+  ++ +    +    L  +L   +G  +GG
Sbjct: 70  LEVLSLLGN--IALDDPFVH----LHAALGDENGITLGG 102

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.94
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.87
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.07
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.04
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	82.02

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.94  E-value=6.6e-27  Score=196.57  Aligned_cols=113  Identities=30%  Similarity=0.391  Sum_probs=94.6

Q ss_pred             ceEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCC--CCCceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440          154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSS--SGGSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (341)
Q Consensus       154 f~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s--~~~tvtyeG~FEILSLSGT~~~~~~~~~~~  231 (341)
                      |++|++||++||||+++|.+||+++++..|+|+++|+|++|+|++++.  .....+|+|+|||+||+|||...++    .
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            789999999999999999999999999889999999999999999843  3468899999999999999998443    2


Q ss_pred             CCCceEEEEeCCCCeEEeeecC-cceEeecceEEEEEEccCC
Q 019440          232 RSGGLSVSLASPDGRVIGGGVG-GMLIAANNVQVIVGSFLWG  272 (341)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~-G~LIAAtpVqVVvgSF~~~  272 (341)
                      ++.||||+|+|.||+|+||||. |.++++  +||+|-.+...
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v~~t--~Ev~i~~~~~~  116 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTVFAT--AEVVITELSGI  116 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEEEEE--EEEEEEEETTE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEEeEE--EEEEEEEecCc
Confidence            6789999999999999999999 555444  55555554443

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.87  E-value=2.2e-21  Score=169.68  Aligned_cols=118  Identities=20%  Similarity=0.229  Sum_probs=107.7

Q ss_pred             CceEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCC
Q 019440          153 GFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGS  229 (341)
Q Consensus       153 ~f~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~  229 (341)
                      .=+-+++||++|||+.+.|.+||+++.+..++++|+|++++++|++++..+   .++++.++||||||.|+|..++    
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~----   83 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD----   83 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence            346789999999999999999999999988999999999999999999543   5789999999999999999998    


Q ss_pred             CCCCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440          230 RNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK  277 (341)
Q Consensus       230 ~~~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~  277 (341)
                        ++.|||++|++++|+++||||.++++.. ++||+|..+....+.++
T Consensus        84 --p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~  128 (141)
T COG1661          84 --PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRRE  128 (141)
T ss_pred             --CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEe
Confidence              5679999999999999999999999888 79999999988766654

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.07  E-value=0.0021  Score=36.02  Aligned_cols=12  Identities=75%  Similarity=1.140  Sum_probs=4.3

Q ss_pred             cccCCCCCCCCC
Q 019440           89 KRKRGRPRKYGP  100 (341)
Q Consensus        89 KkKRGRPRKY~~  100 (341)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            589999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.04  E-value=0.0032  Score=41.31  Aligned_cols=15  Identities=67%  Similarity=0.948  Sum_probs=12.9

Q ss_pred             cccCCCCCCCCCCCC
Q 019440           89 KRKRGRPRKYGPDGS  103 (341)
Q Consensus        89 KkKRGRPRKY~~dg~  103 (341)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999988754

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=82.02  E-value=0.5  Score=44.18  Aligned_cols=12  Identities=75%  Similarity=1.107  Sum_probs=10.5

Q ss_pred             cccccCCCCCCC
Q 019440           87 PVKRKRGRPRKY   98 (341)
Q Consensus        87 ~~KkKRGRPRKY   98 (341)
                      ..|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            489999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	5e-23
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	7e-23
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	2e-14
3htn_A	149	Putative DNA binding protein; DUF269 family protei	3e-07
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	6e-06
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 92.4 bits (229), Expect = 5e-23
 Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 10/124 (8%)

Query: 147 SGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ-GPRAICVLSANGAISTATLRQPSSSGGS 205
           S         + + +  G+++  +L +F QQ   RA  +    G+++   LR       +
Sbjct: 11  SHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EAT 69

Query: 206 VTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVI 265
            +  G FE++ L+G+  L+G          L ++++ P G ++GG +         ++++
Sbjct: 70  TSLTGTFEVISLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLELV 121

Query: 266 VGSF 269
           +G  
Sbjct: 122 IGEL 125

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 91.9 bits (228), Expect = 7e-23
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 156 PHVITVAVGEDIAMKLLSF-SQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEI 214
              + +  G D+  +++    Q    A  + S  G +ST  +R   S   ++     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADS-VSTLQVSAPFEI 62

Query: 215 LCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSF 269
           L LSG+               L +++A   GRV GG +    +     ++++  +
Sbjct: 63  LSLSGTLTYQHCH--------LHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 68.5 bits (167), Expect = 2e-14
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 148 GSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGG 204
            S G     ++  V  GE++   + +F ++      +++  G +    +    +      
Sbjct: 6   FSLG---RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYK 62

Query: 205 SVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQV 264
            +  +G +E++ L G+  L              VSL + +G V GG +    +     ++
Sbjct: 63  VIPLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFV--AEI 116

Query: 265 IVGSF 269
            +   
Sbjct: 117 FLQEL 121

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 157 HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYEGRFE 213
           +++++    +I   L +F ++       ++  GAI   TLR     + +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 214 ILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAA 259
           I  L+G+               L +++   D   + G +   +   
Sbjct: 78  ISNLTGNISSMNE----QVYLHLHITVGRSDYSALAGHLLSAIQNG 119

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 157 HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGS---VTYEGRFE 213
            ++ +  G+D+  ++  F ++       +SA GA+ +A +                   E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 214 ILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIV 266
           IL LSG+  +  +         + V L   DG V GG +    + A  V V+ 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 15/117 (12%), Positives = 38/117 (32%), Gaps = 6/117 (5%)

Query: 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR--QPSSSGGSVTYEGRF 212
           T +++ +  G+++   L   ++            G +S AT                   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 213 EILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSF 269
           E+  ++GS            S     ++     +  GG + G+ +   + ++ V  +
Sbjct: 73  EMANMTGSIAWKEG----KPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 5/29 (17%), Positives = 16/29 (55%)

Query: 84  QSEPVKRKRGRPRKYGPDGSVSLALSPSV 112
           + + +K+ +   + Y  D + +LA+  ++
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.93
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.92
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.88
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.77

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=1.9e-26  Score=198.06  Aligned_cols=115  Identities=22%  Similarity=0.302  Sum_probs=103.4

Q ss_pred             ceEEEEEecCCchHHHHHHHHHHhCCc-cEEEEeeeceeeeEEEeCCCCCCCceeeeeeeEEEEeeceeeeCCCCCCCCC
Q 019440          154 FTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNR  232 (341)
Q Consensus       154 f~phVIrV~~GEDV~~kI~~Faqq~~~-aicILSa~GaVSnVTLRqp~s~~~tvtyeG~FEILSLSGT~~~~~~~~~~~~  232 (341)
                      |++|++||++||||+++|.+||+++++ +.||++++|++++|+||+++.. .+++|+|+|||+||+|||.+. .      
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-~------   73 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-H------   73 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-C------
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-C------
Confidence            899999999999999999999999886 7999999999999999999974 478899999999999999995 1      


Q ss_pred             CCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440          233 SGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK  277 (341)
Q Consensus       233 ~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~  277 (341)
                       .||||+|+|.||+|+||||.+..++..++||++..|....+.++
T Consensus        74 -~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~  117 (142)
T 2p6y_A           74 -CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTRE  117 (142)
T ss_dssp             -EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEE
T ss_pred             -CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEe
Confidence             59999999999999999999766667889999999988667743

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=2.5e-26  Score=199.85  Aligned_cols=120  Identities=18%  Similarity=0.330  Sum_probs=107.3

Q ss_pred             CCCCCceEEEEEecCCchHHHHHHHHHHhCCc-cEEEEeeeceeeeEEEeCCCCCCCceeeeeeeEEEEeeceeeeCCCC
Q 019440          149 SAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNG  227 (341)
Q Consensus       149 s~g~~f~phVIrV~~GEDV~~kI~~Faqq~~~-aicILSa~GaVSnVTLRqp~s~~~tvtyeG~FEILSLSGT~~~~~~~  227 (341)
                      +.+..+++|+|||++||||+++|.+||+++++ +.|||+++|+|++|+||+++... +++|+|+|||+||+|||++..  
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~~--   89 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELTG--   89 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETTE--
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCCC--
Confidence            45678999999999999999999999998876 88999999999999999999744 789999999999999999961  


Q ss_pred             CCCCCCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440          228 GSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK  277 (341)
Q Consensus       228 ~~~~~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~  277 (341)
                            .||||+|+|.||+|+||||.+.+++..++||+|..|....+.++
T Consensus        90 ------~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~  133 (154)
T 2hx0_A           90 ------EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQ  133 (154)
T ss_dssp             ------EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEE
T ss_pred             ------CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEe
Confidence                  59999999999999999999766666889999999987667643

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.94  E-value=1.1e-26  Score=199.03  Aligned_cols=118  Identities=15%  Similarity=0.211  Sum_probs=105.3

Q ss_pred             eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (341)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~~~  231 (341)
                      ++|++||++||||+++|.+||+++++..|+++++|++++|+||+++...   ..++|+|+|||+||+|||.+.++.    
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~----   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE----   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence            6999999999999999999999999877777999999999999998644   368899999999999999997542    


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCccC
Q 019440          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKN  278 (341)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~~  278 (341)
                      ++.||||+|+|.||+|+||||...+ .+ ++||++..|.+..+.++.
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~  130 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP  130 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence            6789999999999999999999887 55 799999999987787553

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.93  E-value=3.8e-26  Score=196.23  Aligned_cols=116  Identities=21%  Similarity=0.238  Sum_probs=103.8

Q ss_pred             eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (341)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~~~  231 (341)
                      ++|+|||++||||+++|.+||+++++..|+|+++|+|++|+||+++...   .+++|+|+|||+||+|||++.++.    
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~----   85 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC----
Confidence            5999999999999999999999998766666999999999999998755   378999999999999999997542    


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK  277 (341)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~  277 (341)
                      ++.||||+|+ .||+|+||||.+.+|  .++||++.+|....+.++
T Consensus        86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~  128 (146)
T 2h6l_A           86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERA  128 (146)
T ss_dssp             EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEE
T ss_pred             ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEe
Confidence            6789999999 999999999998886  689999999998777753

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.92  E-value=3e-25  Score=192.12  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=102.0

Q ss_pred             eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (341)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~~~  231 (341)
                      +.+++||++||||+++|.+||+++++..|+++++|++++|+||+++...   ..++|+|+|||+||+|||++.++    .
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence            6899999999999999999999999987778999999999999987543   26799999999999999999754    2


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCC
Q 019440          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPK  275 (341)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k  275 (341)
                      ++.||||+|+|+||+|+||||... ++..++||+|..+.. .+.
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~  133 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RIS  133 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCE
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeE
Confidence            678999999999999999999987 556779999998866 454

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.88  E-value=3.4e-22  Score=172.40  Aligned_cols=115  Identities=15%  Similarity=0.165  Sum_probs=99.8

Q ss_pred             eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (341)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~~~  231 (341)
                      +-+++||++||||+++|.+||+++++..++++++|++++++|+.++...   ...+++ +|||+||+||+++.++    .
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            3589999999999999999999999988888999999999999987543   256788 8999999999998764    2


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCC
Q 019440          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPK  275 (341)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k  275 (341)
                      ++.|||++++|.+|+|+||||....|.+.++||+|..+.. .+.
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~-~~~  130 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ-RLD  130 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS-CCB
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC-eEE
Confidence            7789999999999999999999886665689999997643 554

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.77  E-value=0.00063  Score=43.39  Aligned_cols=17  Identities=59%  Similarity=0.954  Sum_probs=14.8

Q ss_pred             CcCcCCCCCCCCCCCCc
Q 019440          121 PTQKRGRGRPPGTGRKQ  137 (341)
Q Consensus       121 ~~~kr~RGRPpGS~nK~  137 (341)
                      +..||+||||.|||||.
T Consensus         2 ptpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             CSCCCCSSCCTTCCCCS
T ss_pred             CCCcCCCCCcCcccccC
Confidence            34799999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	4e-20
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	2e-13

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 83.0 bits (205), Expect = 4e-20
 Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 147 SGSAGMGFTPHVITVAVGEDIAMKLLSFS-QQGPRAICVLSANGAISTATLRQPSSSGGS 205
           + S       + + +  G+++  +L +F  Q   RA  +    G+++   LR       +
Sbjct: 2   NASTA---RFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EAT 57

Query: 206 VTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVI 265
            +  G FE++ L+G+  L+G          L ++++ P G ++GG +         ++++
Sbjct: 58  TSLTGTFEVISLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLELV 109

Query: 266 VGSF 269
           +G  
Sbjct: 110 IGEL 113

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 157 HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYEGRFE 213
            ++ +  G+D+  ++  F ++       +SA GA+ +A +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 214 ILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIV 266
           IL LSG+  +  +         + V L   DG V GG +    + A  V V+ 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.94
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.88

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=2e-26  Score=194.82  Aligned_cols=118  Identities=19%  Similarity=0.334  Sum_probs=107.9

Q ss_pred             CCCceEEEEEecCCchHHHHHHHHHHhCCc-cEEEEeeeceeeeEEEeCCCCCCCceeeeeeeEEEEeeceeeeCCCCCC
Q 019440          151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGS  229 (341)
Q Consensus       151 g~~f~phVIrV~~GEDV~~kI~~Faqq~~~-aicILSa~GaVSnVTLRqp~s~~~tvtyeG~FEILSLSGT~~~~~~~~~  229 (341)
                      ++..+.|++||++||||+++|.+||+++++ +.||++++|++++|+|++++. .....++|+|||+||+|+|...+    
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~----   77 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTG----   77 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTE----
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCC----
Confidence            567899999999999999999999998885 899999999999999999986 45668999999999999998876    


Q ss_pred             CCCCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440          230 RNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK  277 (341)
Q Consensus       230 ~~~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~  277 (341)
                          .||||+|+|.||+|+||||.+++++++++||+|..|....++++
T Consensus        78 ----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~  121 (136)
T d2hx0a1          78 ----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQ  121 (136)
T ss_dssp             ----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEE
T ss_pred             ----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEc
Confidence                39999999999999999999989999999999999988767653

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=3.4e-23  Score=173.95  Aligned_cols=116  Identities=21%  Similarity=0.248  Sum_probs=102.4

Q ss_pred             eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCCC---ceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGG---SVTYEGRFEILCLSGSYLLSGNGGSRN  231 (341)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~~---tvtyeG~FEILSLSGT~~~~~~~~~~~  231 (341)
                      +.++++|++||||+++|.+||+++++..|+++++|++++|+|++++...+   .+.++|+|||+||+|||...+++    
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~----   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC----
Confidence            68999999999999999999999999999999999999999998775443   67899999999999999987753    


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK  277 (341)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~  277 (341)
                      ++.|+|+++++ +|+++||||..+++.  ++++++-.|....++++
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~  128 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERA  128 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEE
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEe
Confidence            67899999997 799999999988776  36888888888777643