Citrus Sinensis ID: 019449

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSKK
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcc
cccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHccccccEccHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccc
msgilfhkyggedldsyypirpecqadvpkvRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIqrggihpsikGLVWEFLlgcydpnstfeERNQIRQQRRQQYAAWKTECqnivpiigsgkFITAAivtddgqslqdsnrdsldqgwhvdgaiSDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWvdndigyvqgmndICSPMIVLLENEADAFWCFEHTMRRLRENFrtntgmigvQSQLSTLSQIIRTIDPKLHqhledldggEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSKK
msgilfhkyggedldsyYPIRPECQADVPKVRFKARAGKTLSARRWHaafsedghldIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYesetnqaklwDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIqkkylskskk
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEErnqirqqrrqqYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEAlkiqkkylskskk
***ILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFE****I**QRRQQYAAWKTECQNIVPIIGSGKFITAAIVTD*************DQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKI**********
*********************************************WHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYL*****
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEER************AWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSKK
**G**FHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDG**********************DKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKS**
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query341 2.2.26 [Sep-21-2011]
Q9CXF4 671 TBC1 domain family member yes no 0.689 0.350 0.332 6e-36
Q8TC07 691 TBC1 domain family member yes no 0.689 0.340 0.335 5e-35
Q9UUH7743 GTPase-activating protein yes no 0.739 0.339 0.307 4e-27
Q6FWI1745 GTPase-activating protein yes no 0.686 0.314 0.265 2e-26
P09379730 GTPase-activating protein yes no 0.674 0.315 0.293 2e-26
Q8BYH7645 TBC1 domain family member no no 0.747 0.395 0.297 6e-25
Q6BU76757 GTPase-activating protein yes no 0.695 0.313 0.277 2e-24
A1A5B6 742 TBC1 domain family member no no 0.668 0.307 0.266 3e-24
Q9HA65 648 TBC1 domain family member no no 0.747 0.393 0.307 3e-24
Q3MII6 688 TBC1 domain family member no no 0.668 0.331 0.266 7e-24
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  151 bits (382), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 147/277 (53%), Gaps = 42/277 (15%)

Query: 39  KTLSARRWHAAFSEDGHL-DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQ 97
           + +S   W+ +   +G L  +  + ++I RGG+  S++   W+FLLG +  +ST EER Q
Sbjct: 298 EPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQ 357

Query: 98  IRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAIS 157
           +++Q+  +Y   K + +++                 + Q  ++S              + 
Sbjct: 358 LQKQKTDEYFRMKLQWKSV----------------SEAQEKRNSR-------------LR 388

Query: 158 DKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAK--LWDVLAIYSWVDNDIGYVQGMN 215
           D + L        I  DV RTDR+  FYE + N     L D+L  Y   D D+GYVQGM+
Sbjct: 389 DYRSL--------IEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMS 440

Query: 216 DICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275
           D+ SP++ ++ENE DAFWCF   M ++ +NF     M G+++QL  LS ++R +D     
Sbjct: 441 DLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQ--MQGMKTQLIQLSTLLRLLDSGFCS 498

Query: 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEIL 312
           +LE  D G   F FR L++ F+REFSF+D L LWE++
Sbjct: 499 YLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVM 535
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
255577934421 conserved hypothetical protein [Ricinus 0.879 0.712 0.790 1e-149
297744173 486 unnamed protein product [Vitis vinifera] 0.909 0.637 0.764 1e-146
359480030 451 PREDICTED: TBC1 domain family member 25- 0.914 0.691 0.730 1e-145
224082860418 predicted protein [Populus trichocarpa] 0.868 0.708 0.737 1e-139
297803220424 RabGAP/TBC domain-containing protein [Ar 0.888 0.714 0.734 1e-138
42567218424 RabGAP/TBC domain-containing protein [Ar 0.888 0.714 0.734 1e-138
42569183425 RabGAP/TBC domain-containing protein [Ar 0.888 0.712 0.714 1e-137
356536848424 PREDICTED: TBC1 domain family member 15- 0.882 0.709 0.696 1e-131
356548075413 PREDICTED: TBC1 domain family member 15- 0.862 0.711 0.706 1e-131
297836794425 RabGAP/TBC domain-containing protein [Ar 0.888 0.712 0.714 1e-130
>gi|255577934|ref|XP_002529839.1| conserved hypothetical protein [Ricinus communis] gi|223530667|gb|EEF32540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 238/301 (79%), Positives = 274/301 (91%), Gaps = 1/301 (0%)

Query: 10  GGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGG 69
           GG+D+ ++YPIRPECQAD PK RFK RAGKTLS+RRWHAAFS DGHLDIAKVLRRIQRGG
Sbjct: 13  GGDDIGTFYPIRPECQADAPKPRFKPRAGKTLSSRRWHAAFSGDGHLDIAKVLRRIQRGG 72

Query: 70  IHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAA 129
           +HP+IKGLVWEFLLGCYDPNSTFEERNQ+RQ RR+QY  WK +CQN+VP+IGSGKFIT  
Sbjct: 73  VHPTIKGLVWEFLLGCYDPNSTFEERNQLRQNRREQYCRWKADCQNMVPVIGSGKFITTP 132

Query: 130 IVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESET 189
           I+TDDGQ + DS+R++ D G HV  A+SDKKV+QWML LHQIGLDVVRTDR+LVFYESE+
Sbjct: 133 IITDDGQPIMDSSRNN-DHGGHVSNAVSDKKVIQWMLALHQIGLDVVRTDRTLVFYESES 191

Query: 190 NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTN 249
           NQAKLWDVLAIY+W+DNDIGYVQGMNDICSPM++LLENEADAFWCF+  M++LRENFR +
Sbjct: 192 NQAKLWDVLAIYAWIDNDIGYVQGMNDICSPMVILLENEADAFWCFDRAMQKLRENFRCS 251

Query: 250 TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLW 309
              +GVQ+QL TLSQ+I+T+DPKLHQHLE+LDGGEYLFAFRMLMVLFRREF+F DALYLW
Sbjct: 252 ASSMGVQTQLGTLSQVIKTVDPKLHQHLEELDGGEYLFAFRMLMVLFRREFTFADALYLW 311

Query: 310 E 310
           E
Sbjct: 312 E 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297744173|emb|CBI37143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480030|ref|XP_002272358.2| PREDICTED: TBC1 domain family member 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082860|ref|XP_002306868.1| predicted protein [Populus trichocarpa] gi|222856317|gb|EEE93864.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297803220|ref|XP_002869494.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315330|gb|EFH45753.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567218|ref|NP_194584.3| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|119935837|gb|ABM06008.1| At4g28550 [Arabidopsis thaliana] gi|332660104|gb|AEE85504.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42569183|ref|NP_179634.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|238479300|ref|NP_001154525.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251913|gb|AEC07007.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251914|gb|AEC07008.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356536848|ref|XP_003536945.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356548075|ref|XP_003542429.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|297836794|ref|XP_002886279.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332119|gb|EFH62538.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.888 0.712 0.695 1.9e-127
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.888 0.714 0.714 1.7e-126
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.882 0.690 0.587 8.2e-106
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.879 0.694 0.6 3.5e-105
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.460 0.210 0.493 5.1e-51
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.533 0.252 0.452 1.3e-50
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.354 0.220 0.443 3.4e-37
UNIPROTKB|A8K8E1 445 TBC1D15 "TBC1 domain family, m 0.401 0.307 0.453 4.4e-36
MGI|MGI:1913937 671 Tbc1d15 "TBC1 domain family, m 0.401 0.204 0.453 3e-35
UNIPROTKB|F1LPD8 670 Tbc1d15 "Protein Tbc1d15" [Rat 0.401 0.204 0.453 4.8e-35
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1194 (425.4 bits), Expect = 1.9e-127, Sum P(2) = 1.9e-127
 Identities = 212/305 (69%), Positives = 254/305 (83%)

Query:     8 KYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQR 67
             K GGEDL  +YP+RPECQ DVP+ RFK+RAGKTLSARRWHAAF+EDGHLD+ KVLRRIQR
Sbjct:     9 KSGGEDLQGFYPVRPECQPDVPRTRFKSRAGKTLSARRWHAAFTEDGHLDMEKVLRRIQR 68

Query:    68 GGIHPSIKGLVWEFLLGCYDPNSTFEEXXXXXXXXXXXYAAWKTECQNIVPIIGSGKFIT 127
             GGIHPSIKG VWEFLLGCYDP+STFEE           Y AWK EC+ +VP+IGSGK++T
Sbjct:    69 GGIHPSIKGAVWEFLLGCYDPDSTFEERNILRNRRREQYGAWKEECKKMVPVIGSGKYVT 128

Query:   128 AAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYES 187
              A+V ++G  + +S+ ++  QGW V   ++D++VLQWML LHQIGLDV RTDR L FYE+
Sbjct:   129 MAVVQENGNPIDESSVEN--QGWIVKNTVTDERVLQWMLSLHQIGLDVARTDRYLCFYEN 186

Query:   188 ETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFR 247
             + NQ+KLWDVLAIY+W++ DIGYVQGMNDICSPMI+L ++E DAFWCFE  MRRLRENFR
Sbjct:   187 DRNQSKLWDVLAIYTWLNLDIGYVQGMNDICSPMIILFDDEGDAFWCFERAMRRLRENFR 246

Query:   248 TNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALY 307
                  +GVQ+QL  LSQ+I+T+DP+LHQHLEDLDGGEYLFA RMLMVLFRREFSF+DALY
Sbjct:   247 ATATSMGVQTQLGVLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFSFLDALY 306

Query:   308 LWEIL 312
             LWE++
Sbjct:   307 LWELM 311
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 1e-37
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-37
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 4e-30
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  133 bits (337), Expect = 1e-37
 Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 3/147 (2%)

Query: 168 LHQIGLDVVRTDRSLVFYESETN--QAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLL 225
           +HQI  D+ RT     F++ +    Q  L  VL  Y+  + ++GY QGMN + +P+++++
Sbjct: 47  VHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVM 106

Query: 226 ENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEY 285
           E+E DAFWC    M R   NF     M G+Q  L  L ++++  DP L++HL+DL     
Sbjct: 107 EDEEDAFWCLVKLMERYGPNF-YLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPS 165

Query: 286 LFAFRMLMVLFRREFSFVDALYLWEIL 312
           L+A R  + LF RE      L +W++L
Sbjct: 166 LYALRWFLTLFARELPLEIVLRIWDVL 192

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 341
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.97
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.96
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.96
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.95
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.94
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.92
KOG2595 395 consensus Predicted GTPase activator protein [Sign 99.9
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.86
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.56
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.41
KOG1648813 consensus Uncharacterized conserved protein, conta 99.22
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.31
PF149611296 BROMI: Broad-minded protein 94.75
KOG2224781 consensus Uncharacterized conserved protein, conta 84.78
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-44  Score=318.35  Aligned_cols=278  Identities=26%  Similarity=0.442  Sum_probs=222.2

Q ss_pred             HHHHhhcc-CCCcCHHHHHHHHHhCCCC--CChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 019449           45 RWHAAFSE-DGHLDIAKVLRRIQRGGIH--PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG  121 (341)
Q Consensus        45 ~W~~~~~~-~~~i~~~~l~~~~~~~GIp--~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  121 (341)
                      ..+..+.. +..++..+ +++++..|+|  ..+|+.+|+++||++|++.+.+  ...+.+.+..|..+..+...   .++
T Consensus        11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~---epg   84 (370)
T KOG4567|consen   11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVD---EPG   84 (370)
T ss_pred             hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhcc---Ccc
Confidence            44455554 34478888 7777778999  7999999999999999998765  56788899999998887422   111


Q ss_pred             CCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh---h---------
Q 019449          122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE---T---------  189 (341)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~---~---------  189 (341)
                      ......+  .+..++..+||.+..+.+.|        +...++.+.+.||++||.||.|+..+|+..   +         
T Consensus        85 ~~~~~~~--v~~~D~~~dhPls~~~~sdw--------n~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~  154 (370)
T KOG4567|consen   85 KKDNSKK--VDSNDTDEDHPLSLGPTSDW--------NTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRR  154 (370)
T ss_pred             ccccccc--cccCcccccCCCCCCchhhH--------HHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHh
Confidence            1111111  11122444577766555554        456667789999999999999999988752   0         


Q ss_pred             ---------------hHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhh----------chhHHHHHHHHHHHHHHh
Q 019449          190 ---------------NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE----------NEADAFWCFEHTMRRLRE  244 (341)
Q Consensus       190 ---------------~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~----------~E~~aF~~~~~l~~~~~~  244 (341)
                                     ......|||.+||..||.||||||||+|+||+++|+.          .|+|||+||+++|..+++
T Consensus       155 ~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirD  234 (370)
T KOG4567|consen  155 RINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRD  234 (370)
T ss_pred             hhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHH
Confidence                           1223578999999999999999999999999999984          499999999999999999


Q ss_pred             hhccC--CChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhcc-CchhH
Q 019449          245 NFRTN--TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADIT-GNLDA  321 (341)
Q Consensus       245 ~~~~~--~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~-g~~~l  321 (341)
                      +|..+  ++..|++..+..+..+|+.+|-+||.||++.+|.|++|+++|+.++++.+||+++|+||||.+++.+ +.-.+
T Consensus       235 nf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~L  314 (370)
T KOG4567|consen  235 NFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFL  314 (370)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHH
Confidence            99753  4556888889999999999999999999999999999999999999999999999999999887544 33344


Q ss_pred             HHHHHHHHHHhHHHhhc
Q 019449          322 KKACNEALKIQKKYLSK  338 (341)
Q Consensus       322 ~~~~~~~l~l~~~~ll~  338 (341)
                      .++|++++.+.|+.|++
T Consensus       315 l~iCcsmlil~Re~il~  331 (370)
T KOG4567|consen  315 LYICCSMLILVRERILE  331 (370)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            59999999999999875

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
2g77_A 410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 4e-13
1fkm_A 396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-12
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 7e-11
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 1e-08
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 2e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 2e-07
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 8e-05
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 2e-04
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 169 HQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI------ 222
           HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P        
Sbjct: 108 HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 167
Query: 223 ----------------------VLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLS 260
                                  + + EAD FWC    + ++ +N+    G  G+  Q+ 
Sbjct: 168 YLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPGILRQVK 225
Query: 261 TLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE 310
            LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +W+
Sbjct: 226 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 5e-63
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 1e-51
2qq8_A334 TBC1 domain family member 14; structural genomics 6e-27
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-25
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 4e-24
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-23
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  204 bits (520), Expect = 5e-63
 Identities = 60/304 (19%), Positives = 111/304 (36%), Gaps = 78/304 (25%)

Query: 39  KTLSAR--RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERN 96
            ++  R  ++     +   ++    LR+I   GI    + +VW+ L+G    N+    + 
Sbjct: 2   NSIIQRISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQE 58

Query: 97  QIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAI 156
              Q++R++Y                                         +    D   
Sbjct: 59  GFLQRKRKEYRDSL-------------------------------------KHTFSDQHS 81

Query: 157 SDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMND 216
            D          HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND
Sbjct: 82  RDIPTW------HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGIND 135

Query: 217 ICSPMIVLL----------------------------ENEADAFWCFEHTMRRLRENFRT 248
           + +P                                 + EAD FWC    + ++ +N+  
Sbjct: 136 LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH 195

Query: 249 NTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYL 308
             G  G+  Q+  LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +
Sbjct: 196 --GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRM 253

Query: 309 WEIL 312
           W+  
Sbjct: 254 WDTY 257
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-48  Score=374.59  Aligned_cols=226  Identities=27%  Similarity=0.504  Sum_probs=199.7

Q ss_pred             HHHHHHhhccCCCcCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 019449           43 ARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS  122 (341)
Q Consensus        43 ~~~W~~~~~~~~~i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~  122 (341)
                      .++|.+++.+.+.++.++ +++++++|||+.+|+.||++|+|++|.+.+  +|..+++.++..|.++++++...      
T Consensus         8 ~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~------   78 (396)
T 1fkm_A            8 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSD------   78 (396)
T ss_dssp             HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSS------
T ss_pred             HHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhc------
Confidence            468999999876689888 666788899999999999999999998764  46677888999999999986320      


Q ss_pred             CccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhhHHHHHHHHHHHh
Q 019449          123 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYS  202 (341)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~  202 (341)
                                      .++                     ...+..+||++||.||+|++++|+.+.+++.|+|||.+|+
T Consensus        79 ----------------~~~---------------------~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya  121 (396)
T 1fkm_A           79 ----------------QHS---------------------RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA  121 (396)
T ss_dssp             ----------------SCS---------------------THHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHH
T ss_pred             ----------------cCc---------------------ccHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHH
Confidence                            000                     0125678999999999999999999999999999999999


Q ss_pred             HhcCCCCcCCChHHHHHHHHhhhh------------------c----------hhHHHHHHHHHHHHHHhhhccCCChhh
Q 019449          203 WVDNDIGYVQGMNDICSPMIVLLE------------------N----------EADAFWCFEHTMRRLRENFRTNTGMIG  254 (341)
Q Consensus       203 ~~~p~igY~QGm~~i~a~ll~~~~------------------~----------E~~aF~~~~~l~~~~~~~~~~~~~~~~  254 (341)
                      .+||++|||||||+|+|+|++++.                  +          |++|||||+++|.++..+|..  ++++
T Consensus       122 ~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~--~~~~  199 (396)
T 1fkm_A          122 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPG  199 (396)
T ss_dssp             HHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST--TCHH
T ss_pred             HHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cHHH
Confidence            999999999999999999998762                  1          899999999999998877764  4679


Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhcc
Q 019449          255 VQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADIT  316 (341)
Q Consensus       255 ~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~  316 (341)
                      +...+..+..+|+..+|+||+||.+.|+.+.+|+++||+|+|+++||+++++||||.++.++
T Consensus       200 i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg  261 (396)
T 1fkm_A          200 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET  261 (396)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999998764
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 341
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 9e-22
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 4e-14
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.2 bits (220), Expect = 9e-22
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 74/230 (32%)

Query: 45  RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQ 104
           ++     +   ++    LR+I   GI    + +VW+ L+G    N+  +E    R+++  
Sbjct: 9   KFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEY 67

Query: 105 QYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQW 164
           + +   T                        Q  +D                        
Sbjct: 68  RDSLKHTFSD---------------------QHSRDIPT--------------------- 85

Query: 165 MLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI-- 222
               HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P    
Sbjct: 86  ---WHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFET 142

Query: 223 --------------------------VLLENEADAFWCFEHTMRRLRENF 246
                                      + + EAD FWC    + ++ +N+
Sbjct: 143 FLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.57
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-35  Score=251.70  Aligned_cols=159  Identities=24%  Similarity=0.475  Sum_probs=133.8

Q ss_pred             HHHHHHhhccCCCcCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 019449           43 ARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS  122 (341)
Q Consensus        43 ~~~W~~~~~~~~~i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~  122 (341)
                      ..+|.+++.+.+.++..+ +++++++|||+++|+.||++++|++|.+++.+  .....++++.|..+........     
T Consensus         7 i~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~-----   78 (194)
T d1fkma1           7 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQ--EGFLQRKRKEYRDSLKHTFSDQ-----   78 (194)
T ss_dssp             HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGH--HHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred             HHHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCchhhH--HHHHHHHhhhhhhhhhhhhhcc-----
Confidence            358999998887889988 56777899999999999999999999888644  4566778888888777642100     


Q ss_pred             CccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhhHHHHHHHHHHHh
Q 019449          123 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYS  202 (341)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~  202 (341)
                                       .                 .    ...+..++|++||.||+|++++|+.+++++.|+|||.+|+
T Consensus        79 -----------------~-----------------~----~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya  120 (194)
T d1fkma1          79 -----------------H-----------------S----RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA  120 (194)
T ss_dssp             -----------------C-----------------S----THHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHH
T ss_pred             -----------------c-----------------c----cchHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHH
Confidence                             0                 0    0125688999999999999999999999999999999999


Q ss_pred             HhcCCCCcCCChHHHHHHHHhhhh----------------------------chhHHHHHHHHHHHHHHhhhc
Q 019449          203 WVDNDIGYVQGMNDICSPMIVLLE----------------------------NEADAFWCFEHTMRRLRENFR  247 (341)
Q Consensus       203 ~~~p~igY~QGm~~i~a~ll~~~~----------------------------~E~~aF~~~~~l~~~~~~~~~  247 (341)
                      .+||++|||||||+|||+|+.++.                            .|++|||||+++|++++++|.
T Consensus       121 ~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         121 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             HHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             HHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence            999999999999999999998762                            289999999999999887774
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure