Citrus Sinensis ID: 019478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MSKRARLELDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNVSCLN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccEEEEEcccccccccccccEEEEEEEEEEcccHHHHHHccccccEEEEEEEccccEEEEEEEcccEEEEEEEEEEccEEEEEEcccEEEEEEEcccEEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEEEccEEEEEEcccEEEEccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEEEEEEEcccccccccHHHEEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEEccccEEEEEEccccccEEEEEcccEEEEEEEccccccEEEEccccEEEEEEEEEcccccccccccccccccccHHHHccccccHEEEEEcccHHHHHHHHHHHcccHHHHHcccccccHccc
Coil and Loop (DISEMBL)
mskrarleldtkqDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWnvkkdpatleeERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELnlhpvgggfwpplelyafppeclklfrsprtlsniKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKvvgssvklkylDICYCYFMeeveisapsvrsfkyygpeiklrmenvpqlldisigggygvrmkhAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNVSCLN
Flexible Loop (DISEMBL)
mskrarleldtkqdeilvdWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLkvvgssvklkYLDICYCYFMEeveisapsvrSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNVSCLN
Low Complexity Region (SEG)
MSKRARLELDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNflcfclilllflRKICNSHNVSCLN
Disordered region (IsUnstruct)
*************DEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNV****
Disordered Region (DISOPRED)
***********************LPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNVSCL*
Disordered Region (DISEMBL)
********LDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNVSCLN
Disordered Region (DISPRO)
******************DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNV*CLN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRARLELDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNVSCLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q0WR05	457	F-box/LRR-repeat protein	yes	no	0.679	0.505	0.298	1e-16
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.629	0.514	0.303	6e-15
Q9FJC1	426	Putative FBD-associated F	no	no	0.614	0.490	0.278	3e-13
Q9FNJ4	443	Putative F-box/FBD/LRR-re	no	no	0.529	0.406	0.297	1e-12
Q84W80	481	F-box/LRR-repeat protein	no	no	0.670	0.474	0.292	2e-11
Q8GW80	484	F-box/LRR-repeat protein	no	no	0.814	0.572	0.281	2e-11
Q9SSR7	465	F-box/LRR-repeat protein	no	no	0.614	0.449	0.288	4e-11
Q9LXR4	454	Putative F-box/LRR-repeat	no	no	0.538	0.403	0.306	5e-11
Q6DR13	443	F-box/LRR-repeat protein	no	no	0.517	0.397	0.281	3e-10
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.705	0.526	0.267	3e-10

>sp|Q0WR05|FBL39_ARATH F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 24/255 (9%)

Query: 19  DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPAT 78
           D ISRLPDE+L  I+S ++ +EA  TSVLS RWK ++   + L+    + +   K++   
Sbjct: 5   DVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNRIE 64

Query: 79  LEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHG---SFITHWIFTALAKKVQKLE 135
           +     NY+ +V+ +LD+  G  I +  L   +    G   S I  WI   L   V  ++
Sbjct: 65  IHR---NYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGV--MD 119

Query: 136 LNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLS-------NIKSLRSLCLDAVNVSG-- 186
           L++     G  PP+    F  + L   R  R  +       ++  LR+LCLD+VN  G  
Sbjct: 120 LDVFITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGH 179

Query: 187 EVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSF 246
            V+   I  CP+L  L VV     +      SS  LK L I +      + + AP++  +
Sbjct: 180 NVVGTLISRCPVLEEL-VVEERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYY 238

Query: 247 KYYG------PEIKL 255
           K+ G      P +KL
Sbjct: 239 KHSGYVLGKYPNVKL 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 118/260 (45%), Gaps = 46/260 (17%)

Query: 19  DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPAT 78
           D+IS LP  I+ NI++RL++R+A RTSVLSS+W+Y W+  T L F   +   +   D   
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFD--EKCVSPSNDRCV 63

Query: 79  LEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNL 138
           +E    N + ++  VL  H G  I++F+L    +      I  W+       +++L L L
Sbjct: 64  VET---NLVRFITGVLLLHQG-PIHKFQLSTSFKQCRPD-IDQWLLFLSRNGIKELVLKL 118

Query: 139 HPVGGGFWPPLELYAFPPECLKL---------FRSPRTLSNIKSLRSLCLDAVNVSGEVL 189
               G F  P  L+     CLKL         F  P+       L+SL L  + V+ EV+
Sbjct: 119 G--EGEFRVPACLF----NCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVI 172

Query: 190 EFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYY 249
           E  I  CPLL         + LSL    S V               + ISAP++      
Sbjct: 173 ESLISGCPLL---------EFLSLSYFDSLV---------------LSISAPNLMYLYLD 208

Query: 250 GPEIKLRMENVPQLLDISIG 269
           G    + +EN P+L+ IS+ 
Sbjct: 209 GEFKDIFLENTPKLVAISVS 228

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJC1|FBD31_ARATH Putative FBD-associated F-box protein At5g53635 OS=Arabidopsis thaliana GN=At5g53635 PE=4 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 24/233 (10%)

Query: 21  ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLE 80
           IS+LPD ++ +I+S L +++   T VLS+RW+ LW +  CL  ++L              
Sbjct: 2   ISQLPDPLICHILSHLPIKDLVTTRVLSTRWRSLWLWLPCLELNSLYF------------ 49

Query: 81  EERYNYINWVNDVLDSHMGLCINEFRL---CFELRNSHGSFITHWIFTALAKKVQKLELN 137
            +   ++++ +   DS+   CIN+F+L    +++     S++T WI  A+  K+Q L + 
Sbjct: 50  PDFNAFVSFGDKFFDSNRVSCINKFKLYIYGYDVGVDDPSYLTSWIDAAVKCKIQHLHVQ 109

Query: 138 LHPVGGGFWPPLELYAFPPEC-LKLFR---SPRTLSNIKSLRSLCLDAVNVSGEV-LEFF 192
             P    +  PL LY       LKL R         ++  L+++ L+ V    E  LE F
Sbjct: 110 CLPAKYIYEMPLSLYICETLVYLKLCRVMLDDAEFVSLPCLKTIHLEYVWFPNEANLERF 169

Query: 193 IYSCPLLARLRV--VFSLDLLSLKVVGSSVKLKYLDI--CYCYFMEEVEISAP 241
           +  CP+L  L++    + + ++L+++  S+K   ++I    C F  EV I AP
Sbjct: 170 VSCCPVLEELKIYGCGNENAITLRLLSRSLKKLSINILKSMCDFHSEVVIDAP 222

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNJ4|FDL32_ARATH Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana GN=At5g22670 PE=4 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 25/205 (12%)

Query: 9   LDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKM 68
           + TK+     D IS LPD++L  I+S L  + A RTSVLS RWK        L F+  + 
Sbjct: 1   MSTKRGVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFNVSEF 60

Query: 69  LWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALA 128
                          Y +   V+  LD+    CI++ +L FE +    S++T WI  A+ 
Sbjct: 61  ------------HGYYEFARVVHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVK 108

Query: 129 KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFR---------SPRTLSNIKSLRSLCL 179
           +KVQ L++      G    P  LY    E L   R            +L  +K++    +
Sbjct: 109 RKVQHLDIGRWSYLGQELIPHSLYTC--ETLVSLRLHNVSLPDFDHVSLPRLKTMH--LI 164

Query: 180 DAVNVSGEVLEFFIYSCPLLARLRV 204
           D +  +  +LE  I SCP+L  L V
Sbjct: 165 DNIYPNDALLENLISSCPVLEDLNV 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 120/270 (44%), Gaps = 42/270 (15%)

Query: 19  DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPAT 78
           D ISRLPD+IL  I+S L  R A +TSVLS RW+++W+ T  L+F               
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSF--------------- 81

Query: 79  LEEERYNYINWVNDVLDSHMGLCINEFRLCFELR-------NSHGSFITHWIFTALAKKV 131
              +R +    +N +LD +    +  FR+C   R       ++H   I  WI  A+++ V
Sbjct: 82  -HRDRPD-APCINRILDRYRAPKMMSFRICSCCRAACISRPDTHAD-IDSWINFAMSRNV 138

Query: 132 QKLELNLHPVGGGFWPPLELYAFPP--------ECLKLFRS--PRTLSNIKSLRSLCLDA 181
           + L L L      +  P  LY             C K F S  P+   +  SL++L L  
Sbjct: 139 ENLSLYLD--EDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYH 196

Query: 182 VNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAP 241
            N+S E +   +  CP+L  L + F   L  L  +  S +L  L+I     ME  ++ AP
Sbjct: 197 CNISDESIAIILSGCPILESLLLFFCKKLKVLD-LSKSPRLITLEITRRCRMEPTQLVAP 255

Query: 242 SVRSFKYYGPEIKLRMENVPQL----LDIS 267
            +R  +    E    + +V  L    LDI+
Sbjct: 256 HIRCLRLINSEKPCALVDVSSLSQAELDIT 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW80|FBL65_ARATH F-box/LRR-repeat protein At3g59210 OS=Arabidopsis thaliana GN=At3g59210 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 139/309 (44%), Gaps = 32/309 (10%)

Query: 14  DEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVK 73
           D+   D I+ LPD +L  I+S L+ +EAA TS+LS RW+YL+     L+F  L  L    
Sbjct: 2   DDCSKDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFDVLPSL---H 58

Query: 74  KDPATLEEERYNYINWVNDVLDSHMGLCINEFRL-CFELRNSHGSFITHWIFTALAKKVQ 132
            + A  ++++ ++I++V+ VL       IN+F L C +       F   WI   L   V 
Sbjct: 59  PEVAMQDQDQTSFIDFVDRVLKLRGKDHINKFSLKCGDGIEDEDVF--PWILNTLRHGVS 116

Query: 133 KLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLC---LDAVNVSGEVL 189
            L L++ P    +W P +++A     ++L   P+    +K LR++C   L  +N+   V 
Sbjct: 117 DLSLHVSP-SLVYWLPSKVFA-SKTLVRLKIGPKDGPRVK-LRNVCLPKLKTLNLDSVVF 173

Query: 190 E-------FFIYSCPLLARLRVV-FSLDLLSLKVVGSSVKLKYLDICYCYFM----EEVE 237
           E         +  CP+L  L ++  + D      V S + LK L + YC       + V 
Sbjct: 174 EEGKIGFAKLLSGCPVLEELSLLNLAWDRWDSCSVSSKI-LKRLTL-YCAHSSRNPKSVS 231

Query: 238 ISAPSVRSFKYYGP-EIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296
              P+V  F+Y      K    N   L++ SI    G+RM         Y   ++  E  
Sbjct: 232 FDTPNVVYFEYSDNIANKYPKVNFDSLVEASI----GIRMTKVQKANARYVSDVDE-ETE 286

Query: 297 FVLNAVSIL 305
            V NA  +L
Sbjct: 287 MVGNATDLL 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSR7|FBL31_ARATH F-box/LRR-repeat protein At1g52650 OS=Arabidopsis thaliana GN=At1g52650 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 41/250 (16%)

Query: 18  VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPA 77
           +D +S LP+ +L NI S L  +EAA TS+L  RW+ L  F   L       L      P 
Sbjct: 1   MDHVSSLPEGVLCNIFSFLTTKEAALTSILCKRWRNLLAFVPNLVIDDSVFL-----HPE 55

Query: 78  TLEEERY----NYINWVNDVLDSHMGLCINEFRLCFELRNSHGSF-ITHWIFTALAKKVQ 132
             +EERY    +++ +V+ VL       I +F L F  R    S  +  WI   LA+ V 
Sbjct: 56  EGKEERYEIQQSFMEFVDRVLALQGNSPIKKFSLKF--RTDFASHRVNAWISNVLARGVS 113

Query: 133 KLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIK----------------SLRS 176
           +L++ +   G  F P        P+C K     R L  +K                 L++
Sbjct: 114 ELDVLVILYGAEFLP------LSPKCFK----SRNLVTLKINSLGIDWLAGDIFLPMLKT 163

Query: 177 LCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEV 236
           L L +V +   V +FF  + P L  L V+F++      V  S+  +K L I + Y++  +
Sbjct: 164 LVLHSVKLC--VDKFFFRALPALEEL-VLFAVSWRDRDVTVSNASIKTLTIKFNYYLGTL 220

Query: 237 EISAPSVRSF 246
            +  PS+ SF
Sbjct: 221 SLDTPSLVSF 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR4|FBL56_ARATH Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 16/199 (8%)

Query: 17  LVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDP 76
           +VD +S LPD++L +I+S L  +EAA TS+LS RW+YL  F   L F     L N ++  
Sbjct: 1   MVDLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFL-NPEEGK 59

Query: 77  ATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLEL 136
            T E  R ++I++V+ VL  H    I +F L  +        +  WI   L + V  ++L
Sbjct: 60  QTREGTRQSFIDFVDRVLALHGDSPIRKFSLKCK-TGVDLDLLNQWICNVLQRGVLLIDL 118

Query: 137 NLHPVGGGFWPPLELY--------AFPPECLKLFRSPRTLSNIKSLRSLCLDAV--NVSG 186
           ++    G     +E++             C   F  P  +S +  L++L LD+V  + SG
Sbjct: 119 SMDL--GHRCMFIEIFMSRTLVELKLGSGCRIAF-GPEHISALPMLKTLTLDSVSWSDSG 175

Query: 187 EVLEFFIYSCPLLARLRVV 205
           + LE  + +CP L  L + 
Sbjct: 176 Q-LERLLSACPALEALNLA 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DR13|FBL38_ARATH F-box/LRR-repeat protein At2g42720 OS=Arabidopsis thaliana GN=At2g42720 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 23/199 (11%)

Query: 18  VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPA 77
           +D IS LPDEIL +I+S L+ +EAA TS LS+RWK ++ F   L+    +   N +    
Sbjct: 1   MDRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSLHLDYARQHENPR---- 56

Query: 78  TLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHG----SFITHWIFTALAKKVQK 133
               E  +++++VN + +      I +  L   L+++      + +  WI   L++    
Sbjct: 57  ----EFIDFVDFVNTLFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQSWIHRVLSRG-GV 111

Query: 134 LELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLS--------NIKSLRSLCLDAVNVS 185
            +L+L     G +  + L  F    L   R  R  +         +  L++LCLD V+  
Sbjct: 112 TDLDLFITFKGKFQLVPLLIFKSNTLVKLRLGRGFTIKLCHENVYLPMLKTLCLDTVDFD 171

Query: 186 GE--VLEFFIYSCPLLARL 202
           G+  V E  +  CPLL  L
Sbjct: 172 GDHNVFETLLPRCPLLEEL 190

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 127/299 (42%), Gaps = 59/299 (19%)

Query: 18  VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPA 77
            D+I+ +PD+IL +I+S +    A RTSVLS RW+++W  T CL+               
Sbjct: 26  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDI-------------- 71

Query: 78  TLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELN 137
           TL+         +N  L S+    I  F+L  +L ++    +  WI  AL++ VQ L + 
Sbjct: 72  TLKH------GAMNQTLTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLSVF 125

Query: 138 LHPVGGGFWPPLELYAFP-----PECLKLFRS--------PRTLSNIKSLRSLCLDAVNV 184
           +           + Y FP        LKL           P    + KSLR+L L    +
Sbjct: 126 VRDFTYS-----KTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQI 180

Query: 185 SGEVLEFFIYSCPLLARL-----RVVFSLDLLSLKVVGSSVKLKYLDICYCY-FMEEVEI 238
             E +   +  CP+L  L     R++  LDL        S  L+ LDI   Y     V I
Sbjct: 181 PDESIHNILSGCPILESLTLDTCRLLERLDL------SKSPNLRRLDINQQYRRTGPVAI 234

Query: 239 SAPSVRSFKYYGPEIKLRMENVPQ-LLDI-SIGGGYGVRMKHAISPIMSYFHQLETLEL 295
            AP +    YY   ++L   + P  ++D+ S+       +   +SP+ +  +Q   LE+
Sbjct: 235 VAPHI----YY---LRLTYSSTPSTIVDVSSLSEANLTIISSLLSPLTADGYQTMALEM 286

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
449440973	475	PREDICTED: putative FBD-associated F-box	0.891	0.637	0.382	3e-47
255544812	464	ubiquitin-protein ligase, putative [Rici	0.776	0.568	0.407	2e-46
255540581	457	ubiquitin-protein ligase, putative [Rici	0.867	0.645	0.396	2e-43
302142991	402	unnamed protein product [Vitis vinifera]	0.814	0.689	0.359	2e-36
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.814	0.619	0.319	1e-30
356544606	444	PREDICTED: putative F-box protein At3g58	0.702	0.538	0.333	5e-25
357162424	482	PREDICTED: putative FBD-associated F-box	0.782	0.551	0.285	7e-21
147865783	1789	hypothetical protein VITISV_020815 [Viti	0.867	0.164	0.276	3e-19
297736820	487	unnamed protein product [Vitis vinifera]	0.858	0.599	0.270	1e-18
357119372	497	PREDICTED: uncharacterized protein LOC10	0.735	0.503	0.285	2e-17

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 8/311 (2%)

Query: 18  VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPA 77
           VD IS LP +ILV I+S L ++EAARTS LS +W+ LW+F  CLNF A K L +++    
Sbjct: 44  VDSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLWSFIPCLNFDAHKKLLDLQFTDE 103

Query: 78  TLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELN 137
            L+ ER  ++ WVN V+DS+ G  +   R+ F L +S    +  W+  A+  K++  ELN
Sbjct: 104 NLKSERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVDRWVQFAMQWKLKMFELN 163

Query: 138 L-HPVGGGFWPPL---ELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFI 193
           L      G + P    +L   P E    F      SN  SL++L L AVNV GE LE F+
Sbjct: 164 LSDSYDSGIYSPCSFPQLSDGPKENFPRF----MFSNSSSLKTLKLIAVNVGGEALECFL 219

Query: 194 YSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEI 253
            + PLL  L V +S  LLSL+VVG+S+KL+ L++C C ++E +E+SAP++ SFKY GP +
Sbjct: 220 TNSPLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSAPNLESFKYVGPWL 279

Query: 254 KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCFRVV 313
            + ++N P+LL+   G  +GV +      + SY  QL+ L L   ++ +     + + ++
Sbjct: 280 SMPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILDLEVDFMENQGFRKWPIL 339

Query: 314 NNFLCFCLILL 324
            N     LI++
Sbjct: 340 ANLKELKLIVI 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 176/282 (62%), Gaps = 18/282 (6%)

Query: 19  DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTF-TTCLNFSALKMLW--NVKKD 75
           + IS+LP+++L+NI+SRL ++EAARTS+LS+RW++LWT+ T  ++F A   +W   +   
Sbjct: 33  EHISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDFDASLTMWYLQLGLG 92

Query: 76  PATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLE 135
             +L+ ER+++++WVN VL SH G  +   R+CF+L +     I  WI  A+ K+V++LE
Sbjct: 93  SKSLDMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMYEIDSWITIAMQKRVKRLE 152

Query: 136 LNLHPVGGGFWPPLEL---YAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFF 192
           ++L  +     P ++    YAFP   L         S+  SL++L L+ V+V+GE L+  
Sbjct: 153 IDLTNIE----PSIKTTGSYAFPSGLLND-------SSFSSLKTLQLNMVDVTGEALQHL 201

Query: 193 IYS-CPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGP 251
           + S CPLL  L +V S  L+SLKV GSS+KLKYL++  C  ++ +EI+A S+ SFKYYGP
Sbjct: 202 LLSWCPLLEVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLEITAASLVSFKYYGP 261

Query: 252 EIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETL 293
            I L  ++VP L+D S GG +       +     Y  QLETL
Sbjct: 262 LIGLPFKSVPNLVDASFGGPFCQLTIENLYQFSLYILQLETL 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 174/303 (57%), Gaps = 8/303 (2%)

Query: 1   MSKRARLELDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTC 60
           M+KR +    T  +E   D IS LP+EIL +I+S L   EA+RTSVLS RW+ LWT T+ 
Sbjct: 1   MAKRFQHSSVTSVEEAKEDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTLTSS 60

Query: 61  LNFSALKMLWNVK-KDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFI 119
           LNF   K+    K  D   L  ER  +  WV  VL+ +    ++EF + F+L  +    +
Sbjct: 61  LNFDCTKIALGKKLDDRFALRSERTRFAMWVKRVLEVYKDSNLDEFIVSFDLTCNSRRSL 120

Query: 120 THWIFTALAKKVQKLELNLHPVGG-GFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLC 178
             W+  A++K +++LE++L P     F    E Y+FP +C    R P  LSNI SLRSLC
Sbjct: 121 DKWMNFAMSKTLKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRGPEGLSNISSLRSLC 180

Query: 179 LDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI 238
           L  VN++GEV+E F+ +CPLL +L V  +  L SLKV  SS++LKYL+I  CY ++  EI
Sbjct: 181 LRYVNMTGEVVEHFLLNCPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLKNFEI 240

Query: 239 SAPSV------RSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLET 292
            AP++      +  +Y G  +KL+  ++P LLD+ +GG      +       S F QL T
Sbjct: 241 CAPNLVTILYNQGGRYNGRRMKLQAVHLPHLLDLHLGGPELSITEDFFGACSSSFSQLMT 300

Query: 293 LEL 295
           L++
Sbjct: 301 LKI 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 26/303 (8%)

Query: 19  DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSAL--KMLWNVK--- 73
           D +S LPDEIL++I+SRL +REAA TSVLS RW+YLWT+T+ LNF ++  K++       
Sbjct: 22  DLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTYTSRLNFDSVVNKIVRRSHSFA 81

Query: 74  -KDPATLEEERYNYINWVNDVLDSHM-GLCINEFRLCFELRNSHGSFITHWIFTALAKKV 131
               A     R  YI WV+ VL  +  G  ++EFR+CF+L     S I  W   A++K V
Sbjct: 82  LSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFEFAMSKNV 141

Query: 132 QKLELNL-----HPVGGGFWPPL-----ELYAFPPECLKL--FRSPRTL-SNIKSLRSLC 178
           + LE +             W  +       Y FP   L +   R P  +    KSL++L 
Sbjct: 142 KNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGFKSLKTLS 201

Query: 179 LDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI 238
           L ++NVS E +E+F+ +CPLL RL V  S  L++L+V G S+ L++L+I  C  ++ +EI
Sbjct: 202 LKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCSSIQTIEI 261

Query: 239 SAPSVRSFKYYGPEI------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLET 292
              ++ SF Y G          + +EN P L+++  G G     K+ +  + S  HQL+ 
Sbjct: 262 CDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLLKLSSCVHQLQI 321

Query: 293 LEL 295
           L+L
Sbjct: 322 LQL 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 169/319 (52%), Gaps = 42/319 (13%)

Query: 2   SKRARLELDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT-FTTC 60
            KRA+   +   +E   D I++LPD I +NI++ L ++EAARTS+LS +WK LWT F+  
Sbjct: 11  QKRAKSNNEKDYEE---DIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFSGT 67

Query: 61  LNFSALKMLWNVKKDPATL-------------EEERYNYINWVNDVLDSHMGLCINEFRL 107
           L F    ++ ++ KD   +             + ER  Y +W+N++L S     +   + 
Sbjct: 68  LEFEGSPIMKDMIKDLKKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGLKF 127

Query: 108 CFELRNSHGSFITHWIFTALAKKVQKLELNL-HPVGGGFWPPLELYAFPPECLKLFRSPR 166
            F ++N   S I +WI  A+ KKVQKLEL   H +         +Y  P   L +F+  R
Sbjct: 128 WFPMKNV--SDIDNWIHFAVQKKVQKLELYFGHTI---------VYVLP---LHIFKVER 173

Query: 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLD 226
                 SL  L + ++ V+ E+LE+ + +C LL  L +V S    ++KV GSS+KLK L+
Sbjct: 174 ----FNSLCVLRMKSITVTDEMLEYLMCNCQLLETLSLVDSRVPKTMKVSGSSLKLKCLE 229

Query: 227 ICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSY 286
           +  C+ + ++EI A  + SFKYYG  ++   ++VP L + S GG +   ++ +  P    
Sbjct: 230 LVRCWELTKIEIFAEKLVSFKYYGSHLETEFKSVPCLEEASFGGSFVEFVRESFLP---- 285

Query: 287 FHQLETLELGFVLNAVSIL 305
             Q++ L+L    N+  ++
Sbjct: 286 --QIKVLKLDITQNSPEVI 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 148/264 (56%), Gaps = 25/264 (9%)

Query: 19  DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT-FTTCLNFSALKMLWNVKKDPA 77
           D IS +PD+IL +I+SRL ++EAARTSVL+++W+Y WT F+  L+F      ++++++  
Sbjct: 11  DIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLRNFHLRREHV 70

Query: 78  TL---------EEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALA 128
            +         E ER  ++  + +V+ S     +   R+C +L +     +  W+  A  
Sbjct: 71  GILTKCNVFVYEWER--FMTRMANVMKSLKSSSLQGLRICMDLGDPWR--VAEWVKYAAE 126

Query: 129 KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRS--PRTLSNIKSLRSLCLDAVNVSG 186
           K VQ L+L+       F  P     F    L +  +  P     +KSL +L L +V+VSG
Sbjct: 127 KHVQTLDLDF---SYHFSVP-----FYEISLTIVHNVFPSRGYEMKSLCNLRLSSVDVSG 178

Query: 187 EVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSF 246
           EV+E  + SCPLL  + V+ S  L+ LKV G +++LK+L++  C  M +++I A ++ +F
Sbjct: 179 EVIEGLLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVECRIM-DLDIYAVNLVTF 237

Query: 247 KYYGPEIKLRMENVPQLLDISIGG 270
           +Y G   K + +NVP L++ S GG
Sbjct: 238 RYQGKYGKFKFQNVPSLVEASFGG 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357162424|ref|XP_003579406.1| PREDICTED: putative FBD-associated F-box protein At1g61330-like [Brachypodium distachyon]

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 145/294 (49%), Gaps = 28/294 (9%)

Query: 24  LPDEILVNIISRLAVREAARTSVLSSRWKYLWTFT-TCLNFSALKMLWNVKKDPAT---L 79
           LP +IL +++S+L ++EA RTSVLS++WK++W    T L+F+   +L   ++   T    
Sbjct: 33  LPTDILFSVLSKLPLKEALRTSVLSTQWKHVWRGGCTKLDFTRKTILTKNERTTFTSRSR 92

Query: 80  EEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLH 139
           ++ R  +I  VN ++  H G+ I +FR+   L N H  ++  W+  A+  K ++L L++ 
Sbjct: 93  DDNRKMFIKRVNSIIRQHSGIGIEQFRVIQPLHNEHADYVDTWVNYAIESKAKELVLDMD 152

Query: 140 -PVGGGFWPPLELYAFPPEC--------LKL----FRSPRTLSNIKSLRSLCLDAVNVSG 186
               G    P + ++             L+L     R P   +   +L  L L++VN++ 
Sbjct: 153 WEAHGPEIVPYDFFSHSTNTNSYMHLNSLELNFVSLRLPADFTGFPNLTKLNLESVNITN 212

Query: 187 EVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSF 246
           E  E  ++ C LL  LR+     L SL+    + KLK+L +  C  ++E+E++   +   
Sbjct: 213 EDTEHLLFICTLLVSLRIAHCKMLTSLRTRHLN-KLKHLVVLTCPLLQEIELNC-GITQL 270

Query: 247 KYYGPEIKLRMENVPQLLDISIGGGYGVRMKHA-----ISPIMSYFHQLETLEL 295
            Y GP I L +    +L +I I     +  KH+      S I +  H LE L L
Sbjct: 271 DYRGPIIPLALARSLRLTNICI----KLSTKHSAIDFIFSEIPNTLHDLEVLTL 320

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865783|emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 153/343 (44%), Gaps = 48/343 (13%)

Query: 19   DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLW-------- 70
            DW+  LPD+IL  IIS L ++EA RT +LS RW+ +WT  + L F A  +L         
Sbjct: 1318 DWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSXSM 1377

Query: 71   NVKKDPATLEEERYNYINWVNDVL-DSHMGLCINEFRLCFELRNSHGSFITHWIFTALAK 129
            +  +     + +   ++  V+  +     G  IN F + F L     S I  WI  A+ K
Sbjct: 1378 SGNQPELNSQMQSXKFVERVDQFMYYRSQGPKINSFSIHFPLGKEFMSHIDQWITCAVMK 1437

Query: 130  KVQKLELNLHPV-------GGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLR------- 175
             V+ ++L+L                  ++Y FP  C +LF  P     +K LR       
Sbjct: 1438 GVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFP--C-RLFSVPGGRCTLKHLRLASCHLS 1494

Query: 176  ------------SLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLK 223
                        ++ L  VN+S + L+  + +C  L RL +     L++L     +++LK
Sbjct: 1495 ALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLERLSLCVCNGLVNLSFSALNLQLK 1554

Query: 224  YLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQL----LDISIGGGYGVRMKHA 279
            +L I  C+ +E +EI A  + +FKY G       +NVP+L    L+  I       + +A
Sbjct: 1555 FLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYA 1614

Query: 280  ISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCFCLI 322
            ++       QLETL+L      +S+L LK  ++  N   F  I
Sbjct: 1615 LTRFPQDLPQLETLKL------LSVLTLKKLQLPENGPTFTNI 1651

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736820|emb|CBI26021.3| unnamed protein product [Vitis vinifera]

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 150/340 (44%), Gaps = 48/340 (14%)

Query: 19  DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKML--------W 70
           DW+  LPD+IL  IIS L ++EA RT +LS RW+ +WT  + L F A  +L         
Sbjct: 16  DWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSTSM 75

Query: 71  NVKKDPATLEEERYNYINWVNDVL-DSHMGLCINEFRLCFELRNSHGSFITHWIFTALAK 129
           +  +     + +   ++  V+  +     G  IN F + F L     S I  WI  A+ K
Sbjct: 76  SGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSHIDQWITCAVMK 135

Query: 130 KVQKLELNLHPV-------GGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLR------- 175
            V+ ++L+L                  ++Y FP    +LF  P     +K LR       
Sbjct: 136 GVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFP---CRLFSVPGGRCTLKHLRLASCHLS 192

Query: 176 ------------SLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLK 223
                       ++ L  VN+S + L+  + +C  L  L +     L++L     +++LK
Sbjct: 193 ALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNGLVNLSFSALNLQLK 252

Query: 224 YLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQL----LDISIGGGYGVRMKHA 279
           +L I  C+ +E +EI A  + +FKY G       +NVP+L    L+  I       + +A
Sbjct: 253 FLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYA 312

Query: 280 ISPIMSYFHQLETLELGFVLNAVSILNLKCFRVVNNFLCF 319
           ++       QLETL+L      +S+L LK  ++  N   F
Sbjct: 313 LTRFPQDLPQLETLKL------LSVLTLKKLQLPENGPTF 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119372|ref|XP_003561416.1| PREDICTED: uncharacterized protein LOC100838353 [Brachypodium distachyon]

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 134/294 (45%), Gaps = 44/294 (14%)

Query: 2   SKRARLELDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCL 61
           SKR RL+L            S LP ++L +++S+L + EA +TS+LS +WKY+W   T L
Sbjct: 19  SKRPRLQL------------SDLPMDVLCSVLSQLPMEEAVKTSILSCQWKYIWCHQTSL 66

Query: 62  NFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITH 121
           NF+   ++  V    +T E  R  +I  VN VL    G  + +  + F+L + H + +  
Sbjct: 67  NFNCKTIMPRVAW--STREAVRQEFIKRVNAVLRQRNGAGVEKMNIRFDLDDRHAADVDR 124

Query: 122 WIFTALAKKVQKLELNL--------HPVGGGFWPPLELYAFP----PEC----------- 158
           W+  A+A K + L L L        + +       +E Y FP     EC           
Sbjct: 125 WVNLAIASKTKVLTLELWLDSPAIVYRLRVSDPERMEPYNFPFQLFDECNGSHLRSLHLS 184

Query: 159 ---LKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV 215
              LKL   P       +L+ L L  V+++ E L  F+  C +L  L V+F   L +L +
Sbjct: 185 TVSLKL---PTNFKGFLNLKKLYLSGVSITDEDLGHFVSKCSVLEFLGVLFCTMLETLTI 241

Query: 216 VGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIG 269
             S+ +LK+L I  C  + +V ++  S++   Y GP      +    L D  I 
Sbjct: 242 PHSANQLKHLQIRCCPLLHKVRLNY-SLKMLVYKGPVTYFVSDRTSSLTDACIN 294

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.582	0.475	0.328	1.1e-16
TAIR|locus:2052351	737	AT2G42730 [Arabidopsis thalian	0.664	0.306	0.315	2.4e-14
TAIR|locus:2081172	484	AT3G59210 "AT3G59210" [Arabido	0.811	0.570	0.287	1.3e-13
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.6	0.460	0.309	6.1e-12
TAIR|locus:2025812	486	AT1G80960 "AT1G80960" [Arabido	0.632	0.442	0.281	7.5e-12
TAIR|locus:2085013	532	AT3G42770 "AT3G42770" [Arabido	0.802	0.513	0.265	2.6e-11
TAIR|locus:2099054	454	AT3G58880 "AT3G58880" [Arabido	0.541	0.405	0.311	7.3e-11
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.558	0.427	0.277	9e-11
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.679	0.480	0.278	1.4e-10
TAIR|locus:5019474764	306	AT3G26922 "AT3G26922" [Arabido	0.8	0.888	0.282	2e-10

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 70/213 (32%), Positives = 106/213 (49%)

Query:    19 DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPAT 78
             D+IS LP  I+ NI++RL++R+A RTSVLSS+W+Y W+  T L F   K + +   D   
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDE-KCV-SPSNDRCV 63

Query:    79 LEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNL 138
             +E    N + ++  VL  H G  I++F+L    +      I  W+       +++L L L
Sbjct:    64 VET---NLVRFITGVLLLHQGP-IHKFQLSTSFKQCRPD-IDQWLLFLSRNGIKELVLKL 118

Query:   139 HPVGGGFWPPLELY-AFPPECLKL----FRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFI 193
                 G F  P  L+      CL+L    F  P+       L+SL L  + V+ EV+E  I
Sbjct:   119 GE--GEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLI 176

Query:   194 YSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLD 226
               CPLL  L + +  D L L +   ++   YLD
Sbjct:   177 SGCPLLEFLSLSY-FDSLVLSISAPNLMYLYLD 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052351 AT2G42730 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 77/244 (31%), Positives = 117/244 (47%)

Query:    19 DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPAT 78
             D ISRLPDE+L  I+S ++ +EA  TSVLS RWK ++   + L+    + +   K++   
Sbjct:     5 DVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQN--R 62

Query:    79 LEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHG---SFITHWIFTALAKKVQKLE 135
             +E  R NY+ +V+ +LD+  G  I +  L   +    G   S I  WI   L   V  L+
Sbjct:    63 IEIHR-NYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVMDLD 121

Query:   136 LNLHPVGGGFWPPLELYAFPPECLKLFRSPR----TLS---NIKSLRSLCLDAVNVSG-- 186
             + +   G    PP+    F  + L   R  R     LS   ++  LR+LCLD+VN  G  
Sbjct:   122 VFITLKGKS--PPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGH 179

Query:   187 EVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSF 246
              V+   I  CP+L  L VV     +      SS  LK L I +      + + AP++  +
Sbjct:   180 NVVGTLISRCPVLEEL-VVEERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYY 238

Query:   247 KYYG 250
             K+ G
Sbjct:   239 KHSG 242

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2081172 AT3G59210 "AT3G59210" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 89/310 (28%), Positives = 141/310 (45%)

Query:    14 DEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVK 73
             D+   D I+ LPD +L  I+S L+ +EAA TS+LS RW+YL+     L+F  L  L    
Sbjct:     2 DDCSKDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFDVLPSL---H 58

Query:    74 KDPATLEEERYNYINWVNDVLDSHMGLCINEFRL-CFELRNSHGSFITHWIFTALAKKVQ 132
              + A  ++++ ++I++V+ VL       IN+F L C +       F   WI   L   V 
Sbjct:    59 PEVAMQDQDQTSFIDFVDRVLKLRGKDHINKFSLKCGDGIEDEDVF--PWILNTLRHGVS 116

Query:   133 KLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLD---AVNVSGEVL 189
              L L++ P    +W P +++A     ++L   P+    +K LR++CL     +N+   V 
Sbjct:   117 DLSLHVSP-SLVYWLPSKVFA-SKTLVRLKIGPKDGPRVK-LRNVCLPKLKTLNLDSVVF 173

Query:   190 E-----F--FIYSCPLLARLRVV-FSLDLLSLKVVGSSVKLKYLDICYCYFM----EEVE 237
             E     F   +  CP+L  L ++  + D      V S + LK L + YC       + V 
Sbjct:   174 EEGKIGFAKLLSGCPVLEELSLLNLAWDRWDSCSVSSKI-LKRLTL-YCAHSSRNPKSVS 231

Query:   238 ISAPSVRSFKYYGPEI--KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLEL 295
                P+V  F+Y    I  K    N   L++ SIG    +RM         Y   ++  E 
Sbjct:   232 FDTPNVVYFEY-SDNIANKYPKVNFDSLVEASIG----IRMTKVQKANARYVSDVDE-ET 285

Query:   296 GFVLNAVSIL 305
               V NA  +L
Sbjct:   286 EMVGNATDLL 295

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 69/223 (30%), Positives = 105/223 (47%)

Query:     9 LDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKM 68
             + TK+     D IS LPD++L  I+S L  + A RTSVLS RWK        L F     
Sbjct:     1 MSTKRGVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEF----- 55

Query:    69 LWNVKKDPATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALA 128
               NV +         Y +   V+  LD+    CI++ +L FE +    S++T WI  A+ 
Sbjct:    56 --NVSEFHGY-----YEFARVVHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVK 108

Query:   129 KKVQKLELNLHPVGGGFWPPLELYAFPP-ECLKLFR-SPRTLSNIK--SLRSLCL-DAVN 183
             +KVQ L++      G    P  LY       L+L   S     ++    L+++ L D + 
Sbjct:   109 RKVQHLDIGRWSYLGQELIPHSLYTCETLVSLRLHNVSLPDFDHVSLPRLKTMHLIDNIY 168

Query:   184 VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG-SSVKLKYL 225
              +  +LE  I SCP+L  L V   ++ + +KV+   S+ LK L
Sbjct:   169 PNDALLENLISSCPVLEDLNVSRDVENI-VKVLRVRSLSLKSL 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2025812 AT1G80960 "AT1G80960" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 69/245 (28%), Positives = 114/245 (46%)

Query:    18 VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPA 77
             VDWIS+LPD++L+ I+SRL+  EA RTSV+S RW+++W   + L F   K   N+     
Sbjct:    49 VDWISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHVWNQMSHLVFDMRK---NIINSNN 105

Query:    78 TLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWI-FTALAKKVQKLEL 136
             TL+         +  V+++H G   +   +    +  +G  +  WI   +  K+ + L L
Sbjct:   106 TLDGSN-PVATLITQVINNHRGHLESCVIIHVPYQGGNG-MLNSWIRLLSCVKRTKVLTL 163

Query:   137 NLHPVGGGFWP-PLELYAFPPECLK------------LFRSPRTLSNIKSLRSLCLDAVN 183
               H    G W    + + F P+ L                S   L N  +LR+L L ++ 
Sbjct:   164 RYHY---GTWDRKFKTFNFSPDSLSHPSLMSLSLHSYFLESSHPLRNCSNLRTLKLLSI- 219

Query:   184 VSGEVLEF--FIYSCPLLARLRV---VFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI 238
             V+ E+  F   + SCP L  L +    F    + LK+   + KLK L +     ++ +E+
Sbjct:   220 VAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVPLKI--ENKKLKLLQVSSLERIDAIEV 277

Query:   239 SAPSV 243
             S  S+
Sbjct:   278 STTSL 282

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085013 AT3G42770 "AT3G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 82/309 (26%), Positives = 143/309 (46%)

Query:    24 LPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLEEER 83
             LPDE+LV I+S L  +EA  TS+LS RW+ L+T +  L+F    +L   KK    +   +
Sbjct:     4 LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFDN-SLLLQSKKRKWNMRNIQ 62

Query:    84 YNYINWVNDVLDSHMGLCINEFRLCFE--LRNSHGSF-ITHWIFTALAKKVQKLELNLHP 140
              +++ +V+  L    G  I  F L F+  L + +G   +  WI  AL   V +L L +  
Sbjct:    63 KSFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDVNRWICNALEHGVSELHLRIDY 122

Query:   141 VGGGFWPP--------LELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFF 192
                   P         ++L      C  +   P  +S + SL+ L LD++    EV +F 
Sbjct:   123 TKRCHLPSEIFTSTKLVKLSLVTQSCFPVV--PNCIS-LPSLKVLFLDSIWF--EVPQFL 177

Query:   193 IY--SCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICY-C-YFMEE-VEI-SAPSVRSF 246
             I+  +CP L  L +      + +    SS  +K L + Y C YF++  +++ + PSV   
Sbjct:   178 IFLTACPALEDLTIYQKPHSVGMPYHISSKTIKRLSVTYTCGYFVDYGLKLFNTPSVVDL 237

Query:   247 KYYGPEIK-----LRMENVPQL-LDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLN 300
              YY   ++     + ++++P+  LDI             ++ ++S    ++TL L    +
Sbjct:   238 -YYSDYVRHKYPHMNLDSLPKATLDIHFLDDNAAN----VTELLSGIRNVKTLHL--TSS 290

Query:   301 AVSILNLKC 309
              V ++ L C
Sbjct:   291 TVKVILLCC 299

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2099054 AT3G58880 "AT3G58880" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 7.3e-11, P = 7.3e-11
 Identities = 61/196 (31%), Positives = 97/196 (49%)

Query:    17 LVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDP 76
             +VD +S LPD++L +I+S L  +EAA TS+LS RW+YL  F   L F     L N ++  
Sbjct:     1 MVDLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFL-NPEEGK 59

Query:    77 ATLEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLEL 136
              T E  R ++I++V+ VL  H    I +F L  +        +  WI   L + V  ++L
Sbjct:    60 QTREGTRQSFIDFVDRVLALHGDSPIRKFSLKCKT-GVDLDLLNQWICNVLQRGVLLIDL 118

Query:   137 NLHPVGGGFWPPLELYAFPPEC-LKLFRS------PRTLSNIKSLRSLCLDAVNVSGE-V 188
             ++    G     +E++       LKL         P  +S +  L++L LD+V+ S    
Sbjct:   119 SMDL--GHRCMFIEIFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSVSWSDSGQ 176

Query:   189 LEFFIYSCPLLARLRV 204
             LE  + +CP L  L +
Sbjct:   177 LERLLSACPALEALNL 192

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 9.0e-11, P = 9.0e-11
 Identities = 60/216 (27%), Positives = 109/216 (50%)

Query:    21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLE 80
             +S+LPD ++  I+S L+ ++A RTS+LS+RW+ LW     L+F + ++         +  
Sbjct:    20 LSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSREL--------RSFS 71

Query:    81 EERYNYINWVNDVLDSHMGLCINEFRLC-FELRNSHGSFITHWIFTALAKKVQKLELNLH 139
             E    ++++       H    I + R+C ++L  ++  ++T WI      ++Q +++++ 
Sbjct:    72 E----FVSFAGSFFYLHKDSYIQKLRVCIYDLAGNY--YLTSWIDLVTRHRIQHIDISVF 125

Query:   140 PVGGGFWPPLELYAFPPEC-LKLFRSPRTLSNIK-----SLRSLCLDAVNVSGEVLEFFI 193
                G    PL LY       LKL R   T+ N++      L+ L LD VN + E     I
Sbjct:   126 TCSGFGVIPLSLYTCDTLVHLKLSRV--TMVNVEFVSLPCLKILDLDFVNFTNETTLDKI 183

Query:   194 YSC-PLLARLRVVFSLDLLSLKVVG-SSVKLKYLDI 227
              SC P+L  L +V S +  ++K++   S  LK ++I
Sbjct:   184 ISCSPVLEELTIVKSSED-NVKIIQVRSQTLKRVEI 218

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 71/255 (27%), Positives = 113/255 (44%)

Query:    19 DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPAT 78
             D ISRLPD+IL  I+S L  R A +TSVLS RW+++W+ T  L+F         + D   
Sbjct:    37 DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFH------RDRPDAPC 90

Query:    79 LEE--ERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLEL 136
             +    +RY        ++   +  C      C    ++H   I  WI  A+++ V+ L L
Sbjct:    91 INRILDRYR----APKMMSFRICSCCRA--ACISRPDTHAD-IDSWINFAMSRNVENLSL 143

Query:   137 NL----HPVGGGFW--PPLELYAFPPECLKLFRS--PRTLSNIKSLRSLCLDAVNVSGEV 188
              L    + +    +    L+       C K F S  P+   +  SL++L L   N+S E 
Sbjct:   144 YLDEDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDES 203

Query:   189 LEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248
             +   +  CP+L  L + F   L  L +   S +L  L+I     ME  ++ AP +R  + 
Sbjct:   204 IAIILSGCPILESLLLFFCKKLKVLDL-SKSPRLITLEITRRCRMEPTQLVAPHIRCLRL 262

Query:   249 YGPEIKLRMENVPQL 263
                E    + +V  L
Sbjct:   263 INSEKPCALVDVSSL 277

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474764 AT3G26922 "AT3G26922" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 85/301 (28%), Positives = 136/301 (45%)

Query:    19 DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPAT 78
             D IS LP+ +L+ I+S L V++   TSVLS  W+ LW     L F       + + + + 
Sbjct:    14 DRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKF-------DYENNQS- 65

Query:    79 LEEERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNL 138
              E+E Y+ I  V  +L S+    +    L F         +  WI  A A+ V+ L L++
Sbjct:    66 -EDETYSEI--VCRLLLSNKAPFLESLHLGFRFGECRSVEVGMWIGIAYARHVRDLVLHV 122

Query:   139 HPVGGGFWPPLELYAFPP-ECLKLFRS-----PRTLSNIKSLRSLCLDAVNVSGEVLEFF 192
               V G F  P  LY     E L L RS       + + +KSLR+L L+ V+   +   + 
Sbjct:   123 ESVKGSFIFPTGLYNCETLESLTL-RSWVLVDVPSPACLKSLRTLRLENVDYKYDDSVYN 181

Query:   193 IYS-CPLLARLRVVFSLDLLSLKV----VGSSVKLKYLDICYCYFMEEVEISAPSVRSFK 247
             + S CP L  L VV+  +LL ++     V S  +L   D     +     I+APS++  K
Sbjct:   182 LLSGCPNLENL-VVYRGNLLEVETFTIAVPSLQRLTIYDDNDGEYCTGYVINAPSLKYLK 240

Query:   248 YYGPEI--KLRMENVPQLLDISIGGGYGV---RMKHAISPIMSYFHQLETLELGFVLNAV 302
               G +      +EN P+L++ +I     +   ++   ++ +      L  LEL F  N  
Sbjct:   241 IDGFKALESCLIENAPELVEATIMNVSKIINEKLLETLTSVKRLSLALSPLELKFSCNNY 300

Query:   303 S 303
             S
Sbjct:   301 S 301

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
pfam00646	48	pfam00646, F-box, F-box domain	0.001

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 19 DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT 56
            +  LPD++L+ I+SRL  ++  R S++S RW+ L  
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.75
KOG4341	483	consensus F-box protein containing LRR [General fu	99.55
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.84
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.4
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.37
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.01
KOG4341	483	consensus F-box protein containing LRR [General fu	97.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.71
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.69
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.31
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.07
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.03
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.56
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.95
PRK15386	426	type III secretion protein GogB; Provisional	95.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.54
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.37
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.22
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.75
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.53
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.19
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.71
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.55
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.5
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	93.06
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	92.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	92.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.28
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.94
PRK15386	426	type III secretion protein GogB; Provisional	91.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	91.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	90.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.29
KOG0617	264	consensus Ras suppressor protein (contains leucine	88.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	87.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	87.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	86.28
PF13013	109	F-box-like_2: F-box-like domain	85.8
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	85.39
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	84.4
KOG4237	498	consensus Extracellular matrix protein slit, conta	84.29
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	80.67

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.3e-19  Score=151.74  Aligned_cols=272  Identities=19%  Similarity=0.289  Sum_probs=178.4

Q ss_pred             ccCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhh------ccccceeEecccccccccCCCchhhHHhHHHHHHH
Q 019478           16 ILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYL------WTFTTCLNFSALKMLWNVKKDPATLEEERYNYINW   89 (340)
Q Consensus        16 ~~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (340)
                      .++-.|+.|||||+..||+.|+-+|+.+++.|||||+++      |..   +++..+.+.+                 +.
T Consensus        93 npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p-----------------~~  152 (419)
T KOG2120|consen   93 NPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP-----------------DV  152 (419)
T ss_pred             CCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh-----------------hH
Confidence            444558999999999999999999999999999999875      554   5555554443                 23


Q ss_pred             HHHHHhhcCCCceeEEEEEEEeCCCCchhHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCC
Q 019478           90 VNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLS  169 (340)
Q Consensus        90 v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~  169 (340)
                      ..+++.+    +|..|++.-.+.. ++. +.. ....+..+++.++++...-.-     .             .+...+.
T Consensus       153 l~~l~~r----gV~v~Rlar~~~~-~pr-lae-~~~~frsRlq~lDLS~s~it~-----s-------------tl~~iLs  207 (419)
T KOG2120|consen  153 LGRLLSR----GVIVFRLARSFMD-QPR-LAE-HFSPFRSRLQHLDLSNSVITV-----S-------------TLHGILS  207 (419)
T ss_pred             HHHHHhC----CeEEEEcchhhhc-Cch-hhh-hhhhhhhhhHHhhcchhheeH-----H-------------HHHHHHH
Confidence            3333322    3666655211110 110 111 112233467777776543210     0             1111235


Q ss_pred             CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE---eccCCCcceEEEEecCCceEE-----EEECC
Q 019478          170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFMEEV-----EISAP  241 (340)
Q Consensus       170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~l-----~i~~p  241 (340)
                      .|.+|+.|+|.+.+++|.-... ++...+|+.|+|+.|.|++.-..   -++|+.|.+|+++.|....+.     ..-.+
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            7899999999999998875554 55667899999999999874322   246689999999999855542     22259


Q ss_pred             ceeEEEEeccceee-------ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----ccc---CCcCCCc
Q 019478          242 SVRSFKYYGPEIKL-------RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----FVL---NAVSILN  306 (340)
Q Consensus       242 ~L~~l~l~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~~~---~~~~f~~  306 (340)
                      +|..|.++|+...+       ....||+|.++.+.-+..  +.......+..++-|++|.+.     .|+   .+...+.
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~--l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps  364 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS  364 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc--cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence            99999999985432       346799999999875521  112233445688999999998     333   3557778


Q ss_pred             ceEEEEEcCCchhhhHHHHHHHHhcccccccc
Q 019478          307 LKCFRVVNNFLCFCLILLLFLRKICNSHNVSC  338 (340)
Q Consensus       307 L~~L~l~~~~~~~c~~l~~~~l~~cp~~~~~~  338 (340)
                      |.+|++.+.+..  . -..++.+.||++++.|
T Consensus       365 l~yLdv~g~vsd--t-~mel~~e~~~~lkin~  393 (419)
T KOG2120|consen  365 LVYLDVFGCVSD--T-TMELLKEMLSHLKINC  393 (419)
T ss_pred             eEEEEeccccCc--h-HHHHHHHhCccccccc
Confidence            999999763322  1 3456788999987665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.55  E-value=1.7e-16  Score=140.10  Aligned_cols=249  Identities=17%  Similarity=0.204  Sum_probs=153.6

Q ss_pred             CCChHHHHHHHhcCChHHHHHHHHhhhhhhhh------ccccceeEecccccccccCCCchhhHHhHHHHHHHHHHHHhh
Q 019478           23 RLPDEILVNIISRLAVREAARTSVLSSRWKYL------WTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDS   96 (340)
Q Consensus        23 ~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   96 (340)
                      .||+|++..|||+|+++.+++++++|+.|..+      |..+..++|....-.                  .+| ..+.+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g------------------~VV-~~~~~  134 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG------------------GVV-ENMIS  134 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC------------------cce-ehHhh
Confidence            59999999999999999999999999999864      665543333322100                  123 23444


Q ss_pred             cCCCceeEEEEEEEeCCCCchhHHHHHHHH-Hh-CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCC
Q 019478           97 HMGLCINEFRLCFELRNSHGSFITHWIFTA-LA-KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSL  174 (340)
Q Consensus        97 ~~~~~l~~l~l~~~~~~~~~~~~~~w~~~~-~~-~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L  174 (340)
                      +.|..++.++++.+....+..     +... .. +++++|.+..+....    ......+.             ..|++|
T Consensus       135 Rcgg~lk~LSlrG~r~v~~ss-----lrt~~~~CpnIehL~l~gc~~iT----d~s~~sla-------------~~C~~l  192 (483)
T KOG4341|consen  135 RCGGFLKELSLRGCRAVGDSS-----LRTFASNCPNIEHLALYGCKKIT----DSSLLSLA-------------RYCRKL  192 (483)
T ss_pred             hhccccccccccccccCCcch-----hhHHhhhCCchhhhhhhcceecc----HHHHHHHH-------------Hhcchh
Confidence            555679999998774443332     2222 22 488888776665332    12222333             678999


Q ss_pred             ceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceEEEe---ccCCCcceEEEEecCCce----------------
Q 019478          175 RSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV---GSSVKLKYLDICYCYFME----------------  234 (340)
Q Consensus       175 ~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~----------------  234 (340)
                      +.|.|..|. +++..++.+...||+|+.|++++|+.++.=.+.   ..+..++.+...+|..++                
T Consensus       193 ~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~  272 (483)
T KOG4341|consen  193 RHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILK  272 (483)
T ss_pred             hhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhc
Confidence            999998865 788888888999999999999999876542221   233446666555665322                


Q ss_pred             ----------EEE-----EECCceeEEEEeccce------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceE
Q 019478          235 ----------EVE-----ISAPSVRSFKYYGPEI------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETL  293 (340)
Q Consensus       235 ----------~l~-----i~~p~L~~l~l~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L  293 (340)
                                +..     -.+..|+.+.++++..      .-...++++|+.+.+.-+..- -+..++.+-.++++||.|
T Consensus       273 lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f-sd~~ft~l~rn~~~Le~l  351 (483)
T KOG4341|consen  273 LNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF-SDRGFTMLGRNCPHLERL  351 (483)
T ss_pred             cchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh-hhhhhhhhhcCChhhhhh
Confidence                      111     0134455555554421      112345677777766655221 144566666777777777


Q ss_pred             EEE---------cccCCcCCCcceEEEEE
Q 019478          294 ELG---------FVLNAVSILNLKCFRVV  313 (340)
Q Consensus       294 ~l~---------~~~~~~~f~~L~~L~l~  313 (340)
                      ++.         +......++.|+.|.+.
T Consensus       352 ~~e~~~~~~d~tL~sls~~C~~lr~lsls  380 (483)
T KOG4341|consen  352 DLEECGLITDGTLASLSRNCPRLRVLSLS  380 (483)
T ss_pred             cccccceehhhhHhhhccCCchhccCChh
Confidence            765         12334566666666665

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.84  E-value=2.3e-09  Score=67.47  Aligned_cols=36  Identities=44%  Similarity=0.718  Sum_probs=31.2

Q ss_pred             CCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 019478           21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT   56 (340)
Q Consensus        21 ~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~   56 (340)
                      |+.||+||+.+||++|+.+|+.+++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999998653

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.40  E-value=9.4e-08  Score=60.35  Aligned_cols=37  Identities=43%  Similarity=0.666  Sum_probs=31.2

Q ss_pred             CCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhccc
Q 019478           21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTF   57 (340)
Q Consensus        21 ~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~~   57 (340)
                      ++.||+|++.+||++|+..|+++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5679999999999999999999999999999987664

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.37  E-value=5.1e-07  Score=54.77  Aligned_cols=34  Identities=41%  Similarity=0.672  Sum_probs=31.6

Q ss_pred             CChHHHHHHHhcCChHHHHHHHHhhhhhhhhccc
Q 019478           24 LPDEILVNIISRLAVREAARTSVLSSRWKYLWTF   57 (340)
Q Consensus        24 LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~~   57 (340)
                      ||+|++.+||++++.+|+.+++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.01  E-value=1.6e-06  Score=90.07  Aligned_cols=143  Identities=20%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEE---EECCcee
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVE---ISAPSVR  244 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~---i~~p~L~  244 (340)
                      ..+++|++|+|.++.+... +.  ....++|++|++.++.-...+ ..-..+++|+.|+++++.....+.   -..++|+
T Consensus       115 ~~l~~L~~L~Ls~n~l~~~-~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  191 (968)
T PLN00113        115 TTSSSLRYLNLSNNNFTGS-IP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE  191 (968)
T ss_pred             ccCCCCCEEECcCCccccc-cC--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence            3677777777776655421 11  134677788887777422111 001234788888888775222221   1357888


Q ss_pred             EEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEE
Q 019478          245 SFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVV  313 (340)
Q Consensus       245 ~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~  313 (340)
                      +|++.++..    +-.++.+++|+.+.+..+.   +...+...+.++++|+.|++.       .|..+..+.+|+.|.+.
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNN---LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCc---cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence            888877642    2235677888888776541   111233445688899999887       45566778889999888


Q ss_pred             cCCc
Q 019478          314 NNFL  317 (340)
Q Consensus       314 ~~~~  317 (340)
                      .+.+
T Consensus       269 ~n~l  272 (968)
T PLN00113        269 QNKL  272 (968)
T ss_pred             CCee
Confidence            7533

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.96  E-value=1.4e-07  Score=84.24  Aligned_cols=188  Identities=16%  Similarity=0.214  Sum_probs=125.7

Q ss_pred             CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeec
Q 019478          129 KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFS  207 (340)
Q Consensus       129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c  207 (340)
                      ..++++.+..+...+    ....-.+             ..++|+.+.|.+.++. ++|..+..+...|++|+.|.+..|
T Consensus       138 g~lk~LSlrG~r~v~----~sslrt~-------------~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c  200 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVG----DSSLRTF-------------ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC  200 (483)
T ss_pred             cccccccccccccCC----cchhhHH-------------hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc
Confidence            457778877665443    1112222             2789999999999987 899999999999999999999999


Q ss_pred             CCcceEE---EeccCCCcceEEEEecCCceE-----EEEECCceeEEEEeccce------eeecCCCcccceEEEeecc-
Q 019478          208 LDLLSLK---VVGSSVKLKYLDICYCYFMEE-----VEISAPSVRSFKYYGPEI------KLRMENVPQLLDISIGGGY-  272 (340)
Q Consensus       208 ~~~~~l~---i~~~~~~L~~L~l~~c~~l~~-----l~i~~p~L~~l~l~~~~~------~~~~~~~~~L~~l~l~~~~-  272 (340)
                      ..+++..   +...|++|++|+++.|+.+.+     +.-.+.+++.+...|+..      ...-+.++.+.+++++-+. 
T Consensus       201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~  280 (483)
T KOG4341|consen  201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ  280 (483)
T ss_pred             chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence            9887542   445779999999999996654     222356677776666621      1122344444444422220 


Q ss_pred             ------------------------CchhhhhhhhhhccCCCcceEEEE---------cccCCcCCCcceEEEEEc-----
Q 019478          273 ------------------------GVRMKHAISPIMSYFHQLETLELG---------FVLNAVSILNLKCFRVVN-----  314 (340)
Q Consensus       273 ------------------------~~~~~~~~~~ll~~~~~L~~L~l~---------~~~~~~~f~~L~~L~l~~-----  314 (340)
                                              .+.-+..++.+.+++++|+.|.+.         +.....+++.|+.|.+..     
T Consensus       281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~  360 (483)
T KOG4341|consen  281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT  360 (483)
T ss_pred             ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence                                    011144566777788888888886         233445777888887776     


Q ss_pred             -----CCchhhhHHHHHHHHhccc
Q 019478          315 -----NFLCFCLILLLFLRKICNS  333 (340)
Q Consensus       315 -----~~~~~c~~l~~~~l~~cp~  333 (340)
                           -...+||.++.+.|..|-.
T Consensus       361 d~tL~sls~~C~~lr~lslshce~  384 (483)
T KOG4341|consen  361 DGTLASLSRNCPRLRVLSLSHCEL  384 (483)
T ss_pred             hhhHhhhccCCchhccCChhhhhh
Confidence                 2334678888777777764

>PLN03210 Resistant to P

Probab=97.90  E-value=5.8e-06  Score=86.99  Aligned_cols=84  Identities=17%  Similarity=0.038  Sum_probs=54.5

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFK  247 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~  247 (340)
                      +..+++|+.|+|.++..-. .+..-+..+++|+.|++.+|..+..+......++|+.|.+.+|..++.+.-..++|+.|.
T Consensus       653 ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~  731 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLD  731 (1153)
T ss_pred             cccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeee
Confidence            4567888888887764211 122235567788888888887665443222447888888888876666554456777777


Q ss_pred             Eeccc
Q 019478          248 YYGPE  252 (340)
Q Consensus       248 l~~~~  252 (340)
                      +.++.
T Consensus       732 L~~n~  736 (1153)
T PLN03210        732 LDETA  736 (1153)
T ss_pred             cCCCc
Confidence            77664

syringae 6; Provisional

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.87  E-value=2.3e-06  Score=75.01  Aligned_cols=95  Identities=21%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             eeEEEEEEEeCCCCchhHHHHHHHHHhC--CCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEe
Q 019478          102 INEFRLCFELRNSHGSFITHWIFTALAK--KVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCL  179 (340)
Q Consensus       102 l~~l~l~~~~~~~~~~~~~~w~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L  179 (340)
                      +..+++.   +........+|+....+.  .+++..++.-..+.      ..-.+|. .|  .-+..++.++|+|++|+|
T Consensus        32 ~~~l~ls---gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR------~~~Ei~e-~L--~~l~~aL~~~~~L~~ldL   99 (382)
T KOG1909|consen   32 LTKLDLS---GNTFGTEAARAIAKVLASKKELREVNLSDMFTGR------LKDEIPE-AL--KMLSKALLGCPKLQKLDL   99 (382)
T ss_pred             eEEEecc---CCchhHHHHHHHHHHHhhcccceeeehHhhhcCC------cHHHHHH-HH--HHHHHHHhcCCceeEeec
Confidence            7777764   333455567888887764  55555553221110      1111110 00  001123468899999999


Q ss_pred             eeEEecH---HHHHHHHhcCccceEEeeeecC
Q 019478          180 DAVNVSG---EVLEFFIYSCPLLARLRVVFSL  208 (340)
Q Consensus       180 ~~~~i~~---~~l~~lls~cp~Le~L~L~~c~  208 (340)
                      +...++.   +.+..++++|..|++|.|.+|.
T Consensus       100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen  100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             cccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            9998875   4688999999999999999995

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.72  E-value=2.1e-05  Score=81.77  Aligned_cols=151  Identities=17%  Similarity=0.188  Sum_probs=93.7

Q ss_pred             CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE---EEC
Q 019478          164 SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE---ISA  240 (340)
Q Consensus       164 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~---i~~  240 (340)
                      .|..+.++++|+.|++.++.+... +......++.|+.|++.+|.-.+.+.-....++|+.|+++++.....+.   -..
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNNLQGR-INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             CChhHhcCCCCCEEECcCCcccCc-cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhh
Confidence            445556777888888877665432 2222446788888888887532221111122678888888776322221   124


Q ss_pred             CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceE
Q 019478          241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~  309 (340)
                      ++|+.|+++++...    -.++.+++|+.++|..+   .+.......+.++++|+.|++.       +|..+..+.+|++
T Consensus       499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N---~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN---QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hccCEEECcCCcceeeCChHHcCccCCCEEECCCC---cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            77888888877432    23566788888887654   1122233445678889999987       5666667788899


Q ss_pred             EEEEcCCch
Q 019478          310 FRVVNNFLC  318 (340)
Q Consensus       310 L~l~~~~~~  318 (340)
                      |++.++.+.
T Consensus       576 l~ls~N~l~  584 (968)
T PLN00113        576 VNISHNHLH  584 (968)
T ss_pred             EeccCCcce
Confidence            998885444

>PLN03210 Resistant to P

Probab=97.71  E-value=1.3e-05  Score=84.48  Aligned_cols=168  Identities=14%  Similarity=0.048  Sum_probs=92.8

Q ss_pred             CCCCCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceEEEe-ccCCCcceEEEEecCCceEEEE--E
Q 019478          164 SPRTLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV-GSSVKLKYLDICYCYFMEEVEI--S  239 (340)
Q Consensus       164 ~~~~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~-~~~~~L~~L~l~~c~~l~~l~i--~  239 (340)
                      ++.+...+++|+.|+|.++. +..  +.. ++.+++|++|+|.+|..+..+.-. ..+++|+.|.+.+|..++.+..  .
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~  702 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKE--IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN  702 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCc--CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCC
Confidence            34445667778888876543 211  111 456788888888888765432111 2347888888888887776543  4


Q ss_pred             CCceeEEEEecccee-eecCCCcccceEEEeeccCchhhh----------------------h----hhhhhccCCCcce
Q 019478          240 APSVRSFKYYGPEIK-LRMENVPQLLDISIGGGYGVRMKH----------------------A----ISPIMSYFHQLET  292 (340)
Q Consensus       240 ~p~L~~l~l~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~----------------------~----~~~ll~~~~~L~~  292 (340)
                      .++|+.|.++|+... .......+|+.+.+....-..+..                      .    ........++|+.
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            578888888877421 111223455555554331000000                      0    0001112456777


Q ss_pred             EEEE-------cccCCcCCCcceEEEEEcC-Cch------hhhHHHHHHHHhcccc
Q 019478          293 LELG-------FVLNAVSILNLKCFRVVNN-FLC------FCLILLLFLRKICNSH  334 (340)
Q Consensus       293 L~l~-------~~~~~~~f~~L~~L~l~~~-~~~------~c~~l~~~~l~~cp~~  334 (340)
                      |.+.       +|..+..+++|++|.+.++ .+.      .++.|+.+.+..|.++
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL  838 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence            7776       4555667788888888652 111      2445566666666654

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.69  E-value=1.1e-05  Score=75.42  Aligned_cols=58  Identities=10%  Similarity=0.137  Sum_probs=31.5

Q ss_pred             cCCCcccceEEEeec-cCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcC
Q 019478          257 MENVPQLLDISIGGG-YGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNN  315 (340)
Q Consensus       257 ~~~~~~L~~l~l~~~-~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~  315 (340)
                      +.++++|+++++.-. -.+.+.+ -...+.+++.|++|.+.      ++ ..+..|.+|++|++.+|
T Consensus       361 f~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence            344555555555433 1122222 12345566777777765      33 34667888888888774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.42  E-value=5.3e-05  Score=61.67  Aligned_cols=50  Identities=20%  Similarity=0.137  Sum_probs=25.2

Q ss_pred             cCCCcceEEEE--------cccCCcCCCcceEEEEEcCCchhhhHHHHHHHHhccccc
Q 019478          286 YFHQLETLELG--------FVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHN  335 (340)
Q Consensus       286 ~~~~L~~L~l~--------~~~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~~  335 (340)
                      .+++|++|.+.        ....+..+++|+.|.+.+|.++.-+.-..+.+..||+++
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk  143 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK  143 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence            45566666655        113345677777887777766666667777788888764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.39  E-value=4.9e-06  Score=79.30  Aligned_cols=142  Identities=20%  Similarity=0.272  Sum_probs=84.2

Q ss_pred             CCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceE---EEeccCCCcceEEEEecCCceE-----EEE
Q 019478          168 LSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSL---KVVGSSVKLKYLDICYCYFMEE-----VEI  238 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~~-----l~i  238 (340)
                      ...+++|+.|++.++. ++|.++..+...||+||+|.+.+|..+++.   .+...++.|++|.+.+|..+++     +..
T Consensus       239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~  318 (482)
T KOG1947|consen  239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK  318 (482)
T ss_pred             hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence            3567888888888877 888888888888888888888888765532   2334557788888888876432     223


Q ss_pred             ECCceeEEEEeccc---------------------eeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEEc
Q 019478          239 SAPSVRSFKYYGPE---------------------IKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGF  297 (340)
Q Consensus       239 ~~p~L~~l~l~~~~---------------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~~  297 (340)
                      .+|+++.+.+.+..                     ..+....++.+.++.+.+.. .. +......+.+|++|+ ..+. 
T Consensus       319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~-~~~~~~~l~gc~~l~-~~l~-  394 (482)
T KOG1947|consen  319 NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-IS-DLGLELSLRGCPNLT-ESLE-  394 (482)
T ss_pred             hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-cc-CcchHHHhcCCcccc-hHHH-
Confidence            35666665433221                     12234556666666665542 11 222235566777773 2221 


Q ss_pred             ccCCcCCCcceEEEEEc
Q 019478          298 VLNAVSILNLKCFRVVN  314 (340)
Q Consensus       298 ~~~~~~f~~L~~L~l~~  314 (340)
                       .....+..++.|.+..
T Consensus       395 -~~~~~~~~l~~L~l~~  410 (482)
T KOG1947|consen  395 -LRLCRSDSLRVLNLSD  410 (482)
T ss_pred             -HHhccCCccceEeccc
Confidence             1112222266666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.37  E-value=2.7e-05  Score=74.17  Aligned_cols=141  Identities=19%  Similarity=0.313  Sum_probs=96.6

Q ss_pred             CCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeec-CCcc-----eEEEeccCCCcceEEEEecCCceEEEE---
Q 019478          169 SNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFS-LDLL-----SLKVVGSSVKLKYLDICYCYFMEEVEI---  238 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c-~~~~-----~l~i~~~~~~L~~L~l~~c~~l~~l~i---  238 (340)
                      ..++.|+.|.+..+. +.+.++..++..||.|++|++.+| ....     ...+...+++|++|.+..|..+++..+   
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            458999999999886 888888999999999999999984 3222     123444558999999999986665433   


Q ss_pred             --ECCceeEEEEeccce------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEEcccCCcCCCcceEE
Q 019478          239 --SAPSVRSFKYYGPEI------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCF  310 (340)
Q Consensus       239 --~~p~L~~l~l~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~~~~~~~~f~~L~~L  310 (340)
                        .+|+|+.+.+.++..      ......+++|++++|.++.... +..+..+..++++++.|.+....   .+.+++.+
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-d~~l~~~~~~c~~l~~l~~~~~~---~c~~l~~~  340 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-DSGLEALLKNCPNLRELKLLSLN---GCPSLTDL  340 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-HHHHHHHHHhCcchhhhhhhhcC---CCccHHHH
Confidence              368999988666642      1234568888888888774332 34455556778888887654111   14445555


Q ss_pred             EEE
Q 019478          311 RVV  313 (340)
Q Consensus       311 ~l~  313 (340)
                      .+.
T Consensus       341 ~l~  343 (482)
T KOG1947|consen  341 SLS  343 (482)
T ss_pred             HHH
Confidence            443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.31  E-value=0.00012  Score=65.95  Aligned_cols=146  Identities=15%  Similarity=0.101  Sum_probs=94.2

Q ss_pred             CCCceEEeeeEEecHHHHHHH---HhcC-ccceEEeeeecCCcc----eE-EEeccCCCcceEEEEecCCceEEE-----
Q 019478          172 KSLRSLCLDAVNVSGEVLEFF---IYSC-PLLARLRVVFSLDLL----SL-KVVGSSVKLKYLDICYCYFMEEVE-----  237 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~l---ls~c-p~Le~L~L~~c~~~~----~l-~i~~~~~~L~~L~l~~c~~l~~l~-----  237 (340)
                      ++|++|++.++.+++.++..+   +..+ ++|++|++.+|.-..    .+ ..-..+.+|+.|.+.+|. +++-.     
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence            679999999998887654443   4455 899999999996321    10 011133689999998886 33211     


Q ss_pred             ---EECCceeEEEEecccee--------eecCCCcccceEEEeeccCchhhhhhhhhhc----cCCCcceEEEE------
Q 019478          238 ---ISAPSVRSFKYYGPEIK--------LRMENVPQLLDISIGGGYGVRMKHAISPIMS----YFHQLETLELG------  296 (340)
Q Consensus       238 ---i~~p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~----~~~~L~~L~l~------  296 (340)
                         ...++|+.|.+.++...        ..+..+++|+++.+..+.-.  +..+..+..    ..+.|++|.+.      
T Consensus       187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~--~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~  264 (319)
T cd00116         187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT--DAGAAALASALLSPNISLLTLSLSCNDITD  264 (319)
T ss_pred             HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc--hHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence               12368999998877421        12456788999988765211  112223333    35799999997      


Q ss_pred             -----cccCCcCCCcceEEEEEcCCchhh
Q 019478          297 -----FVLNAVSILNLKCFRVVNNFLCFC  320 (340)
Q Consensus       297 -----~~~~~~~f~~L~~L~l~~~~~~~c  320 (340)
                           +...++.+++|++|++.++....-
T Consensus       265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         265 DGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence                 234566778999999988666644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.28  E-value=0.00014  Score=68.28  Aligned_cols=160  Identities=18%  Similarity=0.202  Sum_probs=82.2

Q ss_pred             CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec--cCCCcceEEEEecCCceEEEEE-
Q 019478          163 RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG--SSVKLKYLDICYCYFMEEVEIS-  239 (340)
Q Consensus       163 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~--~~~~L~~L~l~~c~~l~~l~i~-  239 (340)
                      .+|.......+|+.|.|.+..|+.=.-+. ++..|.|++|+|+... ++.+.-++  ...++++|++++.+ ++.++.. 
T Consensus       116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~  192 (873)
T KOG4194|consen  116 RIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH  192 (873)
T ss_pred             hcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-cccccccc
Confidence            45555466677899999877654321111 5567788888888653 23222221  11567777776654 3332221 


Q ss_pred             ---------------------------CCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCC
Q 019478          240 ---------------------------APSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFH  288 (340)
Q Consensus       240 ---------------------------~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~  288 (340)
                                                 -|+|++|++..+..+    ..+.+.++|+.+.+.-.   .+...-...+-++.
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN---~I~kL~DG~Fy~l~  269 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN---DISKLDDGAFYGLE  269 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc---CcccccCcceeeec
Confidence                                       244555555444322    22445555555555322   11111112233666


Q ss_pred             CcceEEEE------c-ccCCcCCCcceEEEEEcCCch--------hhhHHHHHHH
Q 019478          289 QLETLELG------F-VLNAVSILNLKCFRVVNNFLC--------FCLILLLFLR  328 (340)
Q Consensus       289 ~L~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~--------~c~~l~~~~l  328 (340)
                      ++++|+|.      + ...+..+..|++|++++|-++        +|+.|..+.|
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL  324 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL  324 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence            67777766      1 123445666777777774333        5666655544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=2.3e-05  Score=70.84  Aligned_cols=151  Identities=14%  Similarity=0.066  Sum_probs=102.3

Q ss_pred             CCCCCCCceEEeeeEEecH-HHHHHHHhcCccceEEeeeecCCc--ceEEEeccCCCcceEEEEecCCce-----EEEEE
Q 019478          168 LSNIKSLRSLCLDAVNVSG-EVLEFFIYSCPLLARLRVVFSLDL--LSLKVVGSSVKLKYLDICYCYFME-----EVEIS  239 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~-~~l~~lls~cp~Le~L~L~~c~~~--~~l~i~~~~~~L~~L~l~~c~~l~-----~l~i~  239 (340)
                      ...||+++.|+|+..-+.+ +.+.+++...|+||.|+|+...-.  ..-......++|+.|++..|. +.     .+...
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~  220 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLT  220 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHh
Confidence            4789999999999887776 458889999999999999976421  111122244899999999998 33     34556


Q ss_pred             CCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cc-----cCCc
Q 019478          240 APSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FV-----LNAV  302 (340)
Q Consensus       240 ~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~-----~~~~  302 (340)
                      .|+|+.|.+.++..    .........|++++|....-  ++..-......+++|+.|.+.        .|     +...
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l--i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL--IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc--cccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            79999999887732    12344467788888865411  111111234467788888776        12     2356


Q ss_pred             CCCcceEEEEEcCCchhhh
Q 019478          303 SILNLKCFRVVNNFLCFCL  321 (340)
Q Consensus       303 ~f~~L~~L~l~~~~~~~c~  321 (340)
                      .|+.|+.|.+..|.+...+
T Consensus       299 ~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             ccccceeeecccCcccccc
Confidence            8999999999886654333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=2e-05  Score=68.00  Aligned_cols=125  Identities=14%  Similarity=0.166  Sum_probs=90.5

Q ss_pred             CCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcce---EEEeccCCCcceEEEEecCC-ce-----EEEEE
Q 019478          170 NIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLS---LKVVGSSVKLKYLDICYCYF-ME-----EVEIS  239 (340)
Q Consensus       170 ~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~---l~i~~~~~~L~~L~l~~c~~-l~-----~l~i~  239 (340)
                      .=.+|+.|+|..+. +++.++.-++++|..|.+|+|.+|.-.+.   ..+.+-..+|+.|++++|.. +.     .+.-.
T Consensus       232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            44789999999988 99999999999999999999999975442   23333348999999999973 22     12334


Q ss_pred             CCceeEEEEecccee-----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478          240 APSVRSFKYYGPEIK-----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       240 ~p~L~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      +|+|..|+++++...     ..+-.++.|+++++.=+|+-.  ....--+...|.|..|++.
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEec
Confidence            799999999988431     224456888888887665432  2222235678888888876

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.07  E-value=0.00039  Score=68.75  Aligned_cols=61  Identities=20%  Similarity=0.207  Sum_probs=48.1

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEec
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYC  230 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c  230 (340)
                      .-||+|++|.+.+..+..+++..+-.++|+|..|+++++. ++.+..-+..++|+.|.+.+-
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnL  205 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNL  205 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCC
Confidence            6789999999999998888899999999999999999985 555433344466666666543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.03  E-value=0.0008  Score=60.48  Aligned_cols=149  Identities=16%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             CCCCCCCceEEeeeEEec--HHHHH---HHHhcCccceEEeeeecCCcceE-----EEeccCCCcceEEEEecCCceE--
Q 019478          168 LSNIKSLRSLCLDAVNVS--GEVLE---FFIYSCPLLARLRVVFSLDLLSL-----KVVGSSVKLKYLDICYCYFMEE--  235 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~--~~~l~---~lls~cp~Le~L~L~~c~~~~~l-----~i~~~~~~L~~L~l~~c~~l~~--  235 (340)
                      ....++|+.|.+.+..+.  ...+.   ..+..+++|+.|++.+|.-....     .+... ++|++|.+.+|. +.+  
T Consensus        47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~  124 (319)
T cd00116          47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG-LGDRG  124 (319)
T ss_pred             HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc-cchHH
Confidence            346677888888777665  33333   33445778888888877532110     11111 448888888776 321  


Q ss_pred             -------EEEECCceeEEEEecccee--------eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE---
Q 019478          236 -------VEISAPSVRSFKYYGPEIK--------LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG---  296 (340)
Q Consensus       236 -------l~i~~p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~---  296 (340)
                             +.-..++|+.+.+.++...        ..+..+.+|+++.+..+. .......+...+..+++|+.|++.   
T Consensus       125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence                   1111278888888877422        123445678887776552 111111222334455688888887   


Q ss_pred             --------cccCCcCCCcceEEEEEcCCch
Q 019478          297 --------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       297 --------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                              +...+..+++|++|++.++.+.
T Consensus       205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         205 LTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             cChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence                    2234566778888888875443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.97  E-value=0.001  Score=35.61  Aligned_cols=25  Identities=48%  Similarity=0.745  Sum_probs=22.3

Q ss_pred             CCceEEeeeEEecHH-HHHHHHhcCc
Q 019478          173 SLRSLCLDAVNVSGE-VLEFFIYSCP  197 (340)
Q Consensus       173 ~L~~L~L~~~~i~~~-~l~~lls~cp  197 (340)
                      +||+|+|..+.+.++ .++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999998765 7999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.71  E-value=0.00026  Score=57.64  Aligned_cols=123  Identities=19%  Similarity=0.213  Sum_probs=40.0

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--E--ECCcee
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--I--SAPSVR  244 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i--~~p~L~  244 (340)
                      .+.-++++|+|.+..|+.  ++.+-..+..|+.|+++++. ++.+.--...++|+.|.+++.. ++++.  +  ..|+|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccc--ccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence            345578999998888754  44433457889999999884 2222111123788888888775 55552  2  258888


Q ss_pred             EEEEecccee-----eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE
Q 019478          245 SFKYYGPEIK-----LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       245 ~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      .|.+++....     ..++.+++|+.+.+.... ... ...-.-++..+|+|+.|+-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            8888766431     234567778887776551 111 11122345678888887765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.56  E-value=0.0023  Score=63.90  Aligned_cols=36  Identities=22%  Similarity=0.031  Sum_probs=21.0

Q ss_pred             cCCCcceEEEE---cccCCcCCCcceEEEEEcCCchhhh
Q 019478          286 YFHQLETLELG---FVLNAVSILNLKCFRVVNNFLCFCL  321 (340)
Q Consensus       286 ~~~~L~~L~l~---~~~~~~~f~~L~~L~l~~~~~~~c~  321 (340)
                      ..++|+.|++.   +........+|+.|++.++.+...|
T Consensus       380 l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP  418 (788)
T PRK15387        380 LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP  418 (788)
T ss_pred             cccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCC
Confidence            34567777776   2222223457777777776555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.00021  Score=64.86  Aligned_cols=144  Identities=17%  Similarity=0.208  Sum_probs=94.0

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC---CcceEEEeccCCCcceEEEEecCCc----eEEEEEC
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL---DLLSLKVVGSSVKLKYLDICYCYFM----EEVEISA  240 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~---~~~~l~i~~~~~~L~~L~l~~c~~l----~~l~i~~  240 (340)
                      ..++.+|+...|.+..+.+.+.+..+..||++++|+|+.-=   +..-..|....++|+.|+++.....    ...+...
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            46889999999999998887777788899999999999752   2222355566789999999865411    1233356


Q ss_pred             CceeEEEEeccce-----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc--cCCcCCCcc
Q 019478          241 PSVRSFKYYGPEI-----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV--LNAVSILNL  307 (340)
Q Consensus       241 p~L~~l~l~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~--~~~~~f~~L  307 (340)
                      ++|+.|.+++|..     ......+|+|+.+.+...........-   ..-+..|++|+|.      .+  -....|++|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYKVGTLPGL  273 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccccccccch
Confidence            7888888887743     223566788888877654211000000   1134457777776      12  235577777


Q ss_pred             eEEEEEc
Q 019478          308 KCFRVVN  314 (340)
Q Consensus       308 ~~L~l~~  314 (340)
                      +.|.+..
T Consensus       274 ~~Lnls~  280 (505)
T KOG3207|consen  274 NQLNLSS  280 (505)
T ss_pred             hhhhccc
Confidence            7777766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.95  E-value=0.0087  Score=59.94  Aligned_cols=72  Identities=17%  Similarity=0.130  Sum_probs=33.5

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEEec
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYG  250 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~  250 (340)
                      .++|++|+|.++.++.  +.   ...++|+.|++.++. +..  ++....+|+.|.+.++. ++.+....|+|+.|++++
T Consensus       241 p~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~--Lp~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~  311 (788)
T PRK15387        241 PPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTH--LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD  311 (788)
T ss_pred             CCCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhh--hhhchhhcCEEECcCCc-cccccccccccceeECCC
Confidence            4666777666655432  11   113455666655543 211  11111345555555543 444433345566665555


Q ss_pred             c
Q 019478          251 P  251 (340)
Q Consensus       251 ~  251 (340)
                      +
T Consensus       312 N  312 (788)
T PRK15387        312 N  312 (788)
T ss_pred             C
Confidence            4

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.90  E-value=0.011  Score=54.50  Aligned_cols=47  Identities=23%  Similarity=0.316  Sum_probs=19.4

Q ss_pred             ceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEEe
Q 019478          199 LARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYY  249 (340)
Q Consensus       199 Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~  249 (340)
                      |++|.+.+|..+..+.-. -.++|+.|.+.+|..+..+   .++|++|++.
T Consensus        74 LtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~  120 (426)
T PRK15386         74 LTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGL---PESVRSLEIK  120 (426)
T ss_pred             CcEEEccCCCCcccCCch-hhhhhhheEccCccccccc---ccccceEEeC
Confidence            555555555443221100 0134555555555433322   2344444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.54  E-value=0.0079  Score=53.36  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=52.1

Q ss_pred             ECCceeEEEEeccce--------eeecCCCcccceEEEeec--cCchhhhhhhhhhccCCCcceEEEE-----------c
Q 019478          239 SAPSVRSFKYYGPEI--------KLRMENVPQLLDISIGGG--YGVRMKHAISPIMSYFHQLETLELG-----------F  297 (340)
Q Consensus       239 ~~p~L~~l~l~~~~~--------~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~ll~~~~~L~~L~l~-----------~  297 (340)
                      ++|+|+.|++.++..        .-.+..+++|+++++..+  ........+..+-.+.|+|+.|.+.           +
T Consensus       211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l  290 (382)
T KOG1909|consen  211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL  290 (382)
T ss_pred             hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence            367788887776632        112456788889988887  2222233444455578999999987           2


Q ss_pred             ccCCcCCCcceEEEEEcCCc
Q 019478          298 VLNAVSILNLKCFRVVNNFL  317 (340)
Q Consensus       298 ~~~~~~f~~L~~L~l~~~~~  317 (340)
                      ...+..-+.|+.|++.+|-.
T Consensus       291 a~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  291 AACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhcchhhHHhcCCcccc
Confidence            23344578999999988655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.0022  Score=52.52  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=23.3

Q ss_pred             CCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcc
Q 019478          169 SNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLL  211 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~  211 (340)
                      .+++.++.|++.+|. ++|..++.+-.-.|+|++|+|++|+.++
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            344555555555554 5555555555555555555555555544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.22  E-value=0.011  Score=52.02  Aligned_cols=36  Identities=33%  Similarity=0.554  Sum_probs=33.8

Q ss_pred             CCcCCCCC----hHHHHHHHhcCChHHHHHHHHhhhhhhh
Q 019478           18 VDWISRLP----DEILVNIISRLAVREAARTSVLSSRWKY   53 (340)
Q Consensus        18 ~d~~s~LP----d~il~~Ils~L~~~d~~r~~~vsk~W~~   53 (340)
                      .|-+..||    |+|-..||+||+..++.++-.|||+|++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            47778999    9999999999999999999999999986

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.02  E-value=0.021  Score=51.97  Aligned_cols=37  Identities=30%  Similarity=0.352  Sum_probs=33.3

Q ss_pred             cCCCCChHHHHHHHhcCC-hHHHHHHHHhhhhhhhhcc
Q 019478           20 WISRLPDEILVNIISRLA-VREAARTSVLSSRWKYLWT   56 (340)
Q Consensus        20 ~~s~LPd~il~~Ils~L~-~~d~~r~~~vsk~W~~lw~   56 (340)
                      .|+.||+|+|..|..+|+ .-|++|.+.||+.||....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            388999999999999998 5799999999999998644

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=0.0028  Score=51.94  Aligned_cols=75  Identities=15%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             CceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE---EEeccCCCcceEEEEecCCceEEEEEC----CceeEE
Q 019478          174 LRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL---KVVGSSVKLKYLDICYCYFMEEVEISA----PSVRSF  246 (340)
Q Consensus       174 L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~~l~i~~----p~L~~l  246 (340)
                      ++.++-+++.|..+++++ +.+++.++.|.+.+|..+++.   .+....++|+.|.+++|+.+++-.+.+    +||+.|
T Consensus       103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            344455566677888888 678999999999999887643   223344899999999998777655443    555555


Q ss_pred             EEe
Q 019478          247 KYY  249 (340)
Q Consensus       247 ~l~  249 (340)
                      .++
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            544

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.58  E-value=0.029  Score=49.05  Aligned_cols=36  Identities=31%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CcCCCCChHHHHHHHh-----cCChHHHHHHHHhhhhhhhh
Q 019478           19 DWISRLPDEILVNIIS-----RLAVREAARTSVLSSRWKYL   54 (340)
Q Consensus        19 d~~s~LPd~il~~Ils-----~L~~~d~~r~~~vsk~W~~l   54 (340)
                      +.|+.||||||..||.     .++.+++.++|+|||.|+..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            3467899999999996     45679999999999999853

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.53  E-value=0.021  Score=49.86  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=51.0

Q ss_pred             CCceeEEEEeccce--eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----cccCCcCCCcceEEEE
Q 019478          240 APSVRSFKYYGPEI--KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----FVLNAVSILNLKCFRV  312 (340)
Q Consensus       240 ~p~L~~l~l~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~~~~~~~f~~L~~L~l  312 (340)
                      +|.++.|.++-+..  .-.++..++|+++.+....-..    +..+-..+-|+++|.|.     ....+.++..|..|++
T Consensus       306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~----~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE----CVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDL  381 (490)
T ss_pred             ccceeEEeccccceeeehhhhhcccceEeecccchhHh----hhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccc
Confidence            58888887775533  2236677888888887652111    11222355667777766     1223445566666666


Q ss_pred             Ec---------CCchhhhHHHHHHHHhcc
Q 019478          313 VN---------NFLCFCLILLLFLRKICN  332 (340)
Q Consensus       313 ~~---------~~~~~c~~l~~~~l~~cp  332 (340)
                      .+         ..++..|-|+.+.|..-|
T Consensus       382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  382 SSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             cccchhhHHHhcccccccHHHHHhhcCCC
Confidence            66         344455666666665555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.25  E-value=0.00037  Score=66.18  Aligned_cols=18  Identities=6%  Similarity=0.067  Sum_probs=10.6

Q ss_pred             cccCCcCCCcceEEEEEc
Q 019478          297 FVLNAVSILNLKCFRVVN  314 (340)
Q Consensus       297 ~~~~~~~f~~L~~L~l~~  314 (340)
                      +|+.+..|..|+.|.+..
T Consensus       331 VPEglcRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDH  348 (1255)
T ss_pred             CchhhhhhHHHHHhcccc
Confidence            555555666666665555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.19  E-value=0.011  Score=58.80  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             ccceEEeeeecCCcce---EEEeccCCCcceEEEEecCCce----EEEEECCceeEEEEeccceee--ecCCCcccceEE
Q 019478          197 PLLARLRVVFSLDLLS---LKVVGSSVKLKYLDICYCYFME----EVEISAPSVRSFKYYGPEIKL--RMENVPQLLDIS  267 (340)
Q Consensus       197 p~Le~L~L~~c~~~~~---l~i~~~~~~L~~L~l~~c~~l~----~l~i~~p~L~~l~l~~~~~~~--~~~~~~~L~~l~  267 (340)
                      .+|+.|++.+-..+..   ..+..-.|+|++|.+.+-....    .+-..=|||++|+++|+.+.-  -++...+|+.+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            4567777766432221   1233344777777776533111    111223778888887776532  234455555555


Q ss_pred             EeeccCchhhhhhhhhhccCCCcceEEEE-------------cccCCcCCCcceEEEEEc
Q 019478          268 IGGGYGVRMKHAISPIMSYFHQLETLELG-------------FVLNAVSILNLKCFRVVN  314 (340)
Q Consensus       268 l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------------~~~~~~~f~~L~~L~l~~  314 (340)
                      +....-.. ...+ .=+.++.+|+.|+++             ..+.-..+|+|+.|+..+
T Consensus       202 mrnLe~e~-~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  202 MRNLEFES-YQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             ccCCCCCc-hhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            54331000 0011 113368888888887             234445677888888876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.17  E-value=0.042  Score=36.07  Aligned_cols=16  Identities=19%  Similarity=0.212  Sum_probs=8.4

Q ss_pred             cCCcCCCcceEEEEEc
Q 019478          299 LNAVSILNLKCFRVVN  314 (340)
Q Consensus       299 ~~~~~f~~L~~L~l~~  314 (340)
                      ..+..+++|++|++.+
T Consensus        43 ~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen   43 DAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTTTTSTTESEEEETS
T ss_pred             HHHcCCCCCCEEeCcC
Confidence            3445555555555543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.71  E-value=0.022  Score=34.83  Aligned_cols=35  Identities=23%  Similarity=0.211  Sum_probs=26.8

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL  208 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~  208 (340)
                      ++|++|++.+..+.+  +...++++++|+.|++.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578999999888764  55557889999999999985

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.55  E-value=0.043  Score=29.19  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=14.2

Q ss_pred             CCCCceEEeeeEE-ecHHHHHHHH
Q 019478          171 IKSLRSLCLDAVN-VSGEVLEFFI  193 (340)
Q Consensus       171 ~~~L~~L~L~~~~-i~~~~l~~ll  193 (340)
                      ||+|+.|+|.+|. ++|.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            4566666666665 6666666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.50  E-value=0.024  Score=48.90  Aligned_cols=41  Identities=22%  Similarity=0.123  Sum_probs=33.9

Q ss_pred             CCCCCCCceEEeeeEEecH---HHHHHHHhcCccceEEeeeecC
Q 019478          168 LSNIKSLRSLCLDAVNVSG---EVLEFFIYSCPLLARLRVVFSL  208 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~---~~l~~lls~cp~Le~L~L~~c~  208 (340)
                      +..||.|+..+|+...|+.   +.+..++++...|+.|.+++|.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            4688999999998887764   4577888888999999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.21  E-value=0.048  Score=54.81  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=16.7

Q ss_pred             CCcceEEEE------cccCCcCCCcceEEEEEcCCchhh
Q 019478          288 HQLETLELG------FVLNAVSILNLKCFRVVNNFLCFC  320 (340)
Q Consensus       288 ~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c  320 (340)
                      ++|+.|++.      +|..+  .++|++|++.++.+...
T Consensus       346 ~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        346 PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNL  382 (754)
T ss_pred             CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCC
Confidence            466666665      22222  24677777776544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=93.06  E-value=0.11  Score=45.49  Aligned_cols=21  Identities=14%  Similarity=0.107  Sum_probs=14.1

Q ss_pred             HHhHHHHHHHHHHHHhhcCCC
Q 019478           80 EEERYNYINWVNDVLDSHMGL  100 (340)
Q Consensus        80 ~~~~~~~~~~v~~~l~~~~~~  100 (340)
                      +.++....-+.+..+..+++.
T Consensus        83 e~r~~~leiylq~ll~~f~~~  103 (490)
T KOG1259|consen   83 EQRREQLEIYLQELLIYFRTE  103 (490)
T ss_pred             HHHHHHHHHHHHHHHHHcccc
Confidence            455666667777777777664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=92.57  E-value=0.0075  Score=57.70  Aligned_cols=145  Identities=13%  Similarity=0.202  Sum_probs=80.4

Q ss_pred             CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec----cCCCcceEEEEecCCceEEEE
Q 019478          163 RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG----SSVKLKYLDICYCYFMEEVEI  238 (340)
Q Consensus       163 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~----~~~~L~~L~l~~c~~l~~l~i  238 (340)
                      .+|.....+..|+.|+|++..+.+-  ..=+...+++-.|+|++.. +..  |+.    ....|-.|++++.+ ++.+.-
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVLNLS~N~-Iet--IPn~lfinLtDLLfLDLS~Nr-Le~LPP  167 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVLNLSYNN-IET--IPNSLFINLTDLLFLDLSNNR-LEMLPP  167 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEEEcccCc-ccc--CCchHHHhhHhHhhhccccch-hhhcCH
Confidence            5666667788888888887765431  1114456677778887763 221  111    11344455555544 443322


Q ss_pred             E---CCceeEEEEeccce-eeecCCCcccceE---EEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCC
Q 019478          239 S---APSVRSFKYYGPEI-KLRMENVPQLLDI---SIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSIL  305 (340)
Q Consensus       239 ~---~p~L~~l~l~~~~~-~~~~~~~~~L~~l---~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~  305 (340)
                      .   -.+|++|.++++.. .+.+...|+++.+   .+... ... ..++..-+.++.||..++++      +|++..+..
T Consensus       168 Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T-qRT-l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~  245 (1255)
T KOG0444|consen  168 QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT-QRT-LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR  245 (1255)
T ss_pred             HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc-cch-hhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence            2   24567777777754 3334444544444   33322 111 12233335567777777777      677777778


Q ss_pred             cceEEEEEcC
Q 019478          306 NLKCFRVVNN  315 (340)
Q Consensus       306 ~L~~L~l~~~  315 (340)
                      +|+.|++++|
T Consensus       246 ~LrrLNLS~N  255 (1255)
T KOG0444|consen  246 NLRRLNLSGN  255 (1255)
T ss_pred             hhheeccCcC
Confidence            8888888774

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=92.37  E-value=0.13  Score=33.68  Aligned_cols=36  Identities=19%  Similarity=0.371  Sum_probs=16.0

Q ss_pred             cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEE
Q 019478          257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLEL  295 (340)
Q Consensus       257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l  295 (340)
                      +.++++|+.+++...   .+...-...+.++++|+.|++
T Consensus        21 f~~l~~L~~L~l~~N---~l~~i~~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen   21 FSNLPNLETLDLSNN---NLTSIPPDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TTTGTTESEEEETSS---SESEEETTTTTTSTTESEEEE
T ss_pred             HcCCCCCCEeEccCC---ccCccCHHHHcCCCCCCEEeC
Confidence            344555555555422   111112233445556665554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.28  E-value=0.094  Score=45.92  Aligned_cols=127  Identities=12%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             CCCCCCceEEeeeEEecHH-HHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCC----ceEEEEECCc
Q 019478          169 SNIKSLRSLCLDAVNVSGE-VLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYF----MEEVEISAPS  242 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~-~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~----l~~l~i~~p~  242 (340)
                      ..+..++.|+|.+..++|- ++.+|+.+.|+|+.|+|+...--..+ ..+.+..+|+.|.+.+..-    ..+.--+-|.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            4678899999999998884 69999999999999999876422211 2233447889998887651    1222223466


Q ss_pred             eeEEEEecccee-eec-----CCC-cccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478          243 VRSFKYYGPEIK-LRM-----ENV-PQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       243 L~~l~l~~~~~~-~~~-----~~~-~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      ++.|.++.+..+ +..     +.. +.+..++..-+ ....+....++.+-+||++.+.++
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~~~~~l~r~Fpnv~sv~v~  207 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC-LEQLWLNKNKLSRIFPNVNSVFVC  207 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCc-HHHHHHHHHhHHhhcccchheeee
Confidence            666666655321 111     111 12222222211 111233455667788888888887

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.00  E-value=0.067  Score=28.43  Aligned_cols=17  Identities=24%  Similarity=0.436  Sum_probs=14.1

Q ss_pred             CccceEEeeeecCCcce
Q 019478          196 CPLLARLRVVFSLDLLS  212 (340)
Q Consensus       196 cp~Le~L~L~~c~~~~~  212 (340)
                      ||+|++|+|.+|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            78888999998887765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.94  E-value=0.0048  Score=53.17  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             CcceEEEEecCCceEEEEE--CCceeEEEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478          221 KLKYLDICYCYFMEEVEIS--APSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       221 ~L~~L~l~~c~~l~~l~i~--~p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      +.+.|+.++|. +.+|.|.  .|.|+.|.++-+.+.  -.+..|..|++++|.-+.-.+  ..-..++.++|+|+.|.|.
T Consensus        20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhHhhc
Confidence            34555555554 5544443  466666666544332  235678888888775441111  1223567888888888887


Q ss_pred             -cc-----------cCCcCCCcceEEE
Q 019478          297 -FV-----------LNAVSILNLKCFR  311 (340)
Q Consensus       297 -~~-----------~~~~~f~~L~~L~  311 (340)
                       -|           ..+-.++||++|+
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence             11           1244677777774

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.52  E-value=0.3  Score=45.30  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=51.7

Q ss_pred             HHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE-EECCceeEEEEeccc-eeeecCCCcccce
Q 019478          188 VLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-ISAPSVRSFKYYGPE-IKLRMENVPQLLD  265 (340)
Q Consensus       188 ~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i~~p~L~~l~l~~~~-~~~~~~~~~~L~~  265 (340)
                      .+.. +..|+.++.|++.+| .+..+-  .-..+|+.|.+.+|..++.+. .-.++|++|.+.++. ..   .-.++|+.
T Consensus        44 a~~r-~~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~---sLP~sLe~  116 (426)
T PRK15386         44 ITPQ-IEEARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS---GLPESVRS  116 (426)
T ss_pred             HHHH-HHHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc---ccccccce
Confidence            3444 566899999999999 455432  222689999999999876654 225799999999872 22   22355666


Q ss_pred             EEEe
Q 019478          266 ISIG  269 (340)
Q Consensus       266 l~l~  269 (340)
                      +.+.
T Consensus       117 L~L~  120 (426)
T PRK15386        117 LEIK  120 (426)
T ss_pred             EEeC
Confidence            6664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=91.11  E-value=0.074  Score=53.51  Aligned_cols=12  Identities=17%  Similarity=-0.200  Sum_probs=6.1

Q ss_pred             CcceEEEEEcCC
Q 019478          305 LNLKCFRVVNNF  316 (340)
Q Consensus       305 ~~L~~L~l~~~~  316 (340)
                      +++..|.+.+|.
T Consensus       415 ~~l~~L~L~~Np  426 (754)
T PRK15370        415 PQPTRIIVEYNP  426 (754)
T ss_pred             CCccEEEeeCCC
Confidence            445555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=90.92  E-value=0.41  Score=49.21  Aligned_cols=38  Identities=13%  Similarity=-0.030  Sum_probs=25.4

Q ss_pred             cCCcCCCcceEEEEEcCCch--------------hhhHHHHHHHHhcccccc
Q 019478          299 LNAVSILNLKCFRVVNNFLC--------------FCLILLLFLRKICNSHNV  336 (340)
Q Consensus       299 ~~~~~f~~L~~L~l~~~~~~--------------~c~~l~~~~l~~cp~~~~  336 (340)
                      .....+.+|+.|.|.+....              +.|++..+....|..+..
T Consensus       711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~  762 (889)
T KOG4658|consen  711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD  762 (889)
T ss_pred             cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence            34667888999988882221              156777777778876543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.29  E-value=0.16  Score=26.26  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=16.3

Q ss_pred             CCCCceEEeeeEEecHHHHHHHH
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFI  193 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~ll  193 (340)
                      +++|++|+|.++.|+++++..+.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            47889999998889888877653

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=88.21  E-value=0.011  Score=47.46  Aligned_cols=40  Identities=30%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeee
Q 019478          164 SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVV  205 (340)
Q Consensus       164 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~  205 (340)
                      +|.....+.+|++|++++..+.+  +.--++..|.|+.|++.
T Consensus        48 vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvg   87 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVG   87 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecc
Confidence            34445677777777777665533  22225666666666655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=87.69  E-value=0.23  Score=30.20  Aligned_cols=18  Identities=22%  Similarity=0.325  Sum_probs=9.1

Q ss_pred             CcCCCcceEEEEEcCCch
Q 019478          301 AVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       301 ~~~f~~L~~L~l~~~~~~  318 (340)
                      +..+++|+.|.+.++.+.
T Consensus        20 l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             GTTCTTSSEEEETSSCCS
T ss_pred             HhCCCCCCEEEecCCCCC
Confidence            445555555555554433

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.02  E-value=0.068  Score=45.70  Aligned_cols=102  Identities=17%  Similarity=0.114  Sum_probs=51.2

Q ss_pred             hcCccceEEeeeecCCcceEEEeccCCCcceEEEEecC-----CceEEEEECCceeEEEEeccceee--ec---CCCccc
Q 019478          194 YSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCY-----FMEEVEISAPSVRSFKYYGPEIKL--RM---ENVPQL  263 (340)
Q Consensus       194 s~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~-----~l~~l~i~~p~L~~l~l~~~~~~~--~~---~~~~~L  263 (340)
                      ...-.|+.|.+.+|.-.+....+. +++|+.|.++...     .+.-+...+|+|+++.++|+..+.  .+   ....+|
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeecccCCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            334455555566664433334443 2677777776552     122233346888888888876542  11   223334


Q ss_pred             ceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478          264 LDISIGGGYGVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       264 ~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      ..+.+..+..-..++.-.+.+.-+++|+.|+-.
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            444444332112233333445556666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=86.28  E-value=1.6  Score=36.28  Aligned_cols=80  Identities=21%  Similarity=0.250  Sum_probs=50.2

Q ss_pred             CCCCCCceEEeeeEEecH--HHHHHHHhcCccceEEeeeecC--CcceEEEeccCCCcceEEEEecCC-----ceEEEEE
Q 019478          169 SNIKSLRSLCLDAVNVSG--EVLEFFIYSCPLLARLRVVFSL--DLLSLKVVGSSVKLKYLDICYCYF-----MEEVEIS  239 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~--~~l~~lls~cp~Le~L~L~~c~--~~~~l~i~~~~~~L~~L~l~~c~~-----l~~l~i~  239 (340)
                      ..++.|..|.|.+.+|++  +.+..   ..|+|..|.+.+..  .+.++.--+.+++|++|++-+.+-     .....+.
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY  137 (233)
T ss_pred             CCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence            467888888888877653  33443   35888888888754  233333334557888888876551     1122233


Q ss_pred             -CCceeEEEEecc
Q 019478          240 -APSVRSFKYYGP  251 (340)
Q Consensus       240 -~p~L~~l~l~~~  251 (340)
                       -|+|+.|++.+.
T Consensus       138 klp~l~~LDF~kV  150 (233)
T KOG1644|consen  138 KLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcceEeehhhh
Confidence             588888887754

>PF13013 F-box-like_2: F-box-like domain

Probab=85.80  E-value=1.2  Score=33.00  Aligned_cols=30  Identities=20%  Similarity=-0.007  Sum_probs=26.5

Q ss_pred             cCCCCChHHHHHHHhcCChHHHHHHHHhhh
Q 019478           20 WISRLPDEILVNIISRLAVREAARTSVLSS   49 (340)
Q Consensus        20 ~~s~LPd~il~~Ils~L~~~d~~r~~~vsk   49 (340)
                      .+.+||+||+..|+.+-...++......|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            478899999999999999999888887776

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=85.39  E-value=0.39  Score=46.47  Aligned_cols=40  Identities=28%  Similarity=0.396  Sum_probs=36.2

Q ss_pred             cccCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 019478           15 EILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYL   54 (340)
Q Consensus        15 ~~~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~l   54 (340)
                      ....|-++.||-++..+||++|+.+++..+++||+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3456888999999999999999999999999999999864

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=84.40  E-value=0.4  Score=44.53  Aligned_cols=139  Identities=18%  Similarity=0.198  Sum_probs=86.5

Q ss_pred             CCC-CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE--CCc-ee
Q 019478          169 SNI-KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS--APS-VR  244 (340)
Q Consensus       169 ~~~-~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~--~p~-L~  244 (340)
                      ... ++|+.|++.+..+.+  +..-+..+|.|+.|++.++.-...-......+.|+.|.+++.. +.++.-.  .++ |+
T Consensus       136 ~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~  212 (394)
T COG4886         136 GLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALE  212 (394)
T ss_pred             ccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhh
Confidence            444 389999998877644  2123678999999999999632211111133788889888875 6665542  344 88


Q ss_pred             EEEEeccc-e--eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcC
Q 019478          245 SFKYYGPE-I--KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNN  315 (340)
Q Consensus       245 ~l~l~~~~-~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~  315 (340)
                      .+.+.+.. .  ...+.....+..+.+.....    ..+...+..+++++.|.+.      ++. +..+.+|+.|.+.++
T Consensus       213 ~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKL----EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             hhhhcCCcceecchhhhhcccccccccCCcee----eeccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence            88887772 2  22233444444444221100    0113556688889999988      333 778889999999873

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=84.29  E-value=1.3  Score=40.44  Aligned_cols=87  Identities=20%  Similarity=0.301  Sum_probs=60.8

Q ss_pred             CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceE
Q 019478          241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~  309 (340)
                      |+|++++++++..    .-.+++...+++++++-.   .+...-...+.++.+|+.|+|.       .|..+.....|..
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N---~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN---KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcc---hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            8899999988743    345788899999988643   3344455668899999999998       3455666667888


Q ss_pred             EEEEcC-Cchhh-hHHHHHHHHh
Q 019478          310 FRVVNN-FLCFC-LILLLFLRKI  330 (340)
Q Consensus       310 L~l~~~-~~~~c-~~l~~~~l~~  330 (340)
                      |.+..| ..+.| ..|..-+++.
T Consensus       351 l~l~~Np~~CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  351 LNLLSNPFNCNCRLAWLGEWLRK  373 (498)
T ss_pred             eehccCcccCccchHHHHHHHhh
Confidence            877664 45556 3355555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=80.67  E-value=1.1  Score=45.39  Aligned_cols=139  Identities=13%  Similarity=0.052  Sum_probs=75.2

Q ss_pred             CCCce-EEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE--CCceeEEEE
Q 019478          172 KSLRS-LCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS--APSVRSFKY  248 (340)
Q Consensus       172 ~~L~~-L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~--~p~L~~l~l  248 (340)
                      .+|+. |+|.+..+.    ...++.|++|+.|....- ++..+.+..  ++|+.|..++|+ +..+...  ..+|+++++
T Consensus       177 ~~l~~~ldLr~N~~~----~~dls~~~~l~~l~c~rn-~ls~l~~~g--~~l~~L~a~~n~-l~~~~~~p~p~nl~~~di  248 (1081)
T KOG0618|consen  177 YNLTHQLDLRYNEME----VLDLSNLANLEVLHCERN-QLSELEISG--PSLTALYADHNP-LTTLDVHPVPLNLQYLDI  248 (1081)
T ss_pred             hhhheeeecccchhh----hhhhhhccchhhhhhhhc-ccceEEecC--cchheeeeccCc-ceeeccccccccceeeec
Confidence            44444 666665543    122677888887765433 456666666  888999998887 4322221  256666666


Q ss_pred             eccce---eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchh
Q 019478          249 YGPEI---KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       249 ~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      +-...   +--++.+++|+.+.+...   .+.... .=.....+|+.|.+.      +|.....+..|++|++..+.+..
T Consensus       249 s~n~l~~lp~wi~~~~nle~l~~n~N---~l~~lp-~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  249 SHNNLSNLPEWIGACANLEALNANHN---RLVALP-LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             chhhhhcchHHHHhcccceEecccch---hHHhhH-HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence            54321   222456677777766443   110000 001122334444433      45555566677777777665555


Q ss_pred             hhH
Q 019478          320 CLI  322 (340)
Q Consensus       320 c~~  322 (340)
                      .|.
T Consensus       325 lp~  327 (1081)
T KOG0618|consen  325 LPD  327 (1081)
T ss_pred             cch
Confidence            554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 55/241 (22%)

Query: 9   LDTKQDEILVDWISRL--PD-EILVNIISRLAVREAARTSVLSSRWKYLWT----FTTCL 61
           L +KQ+E++  ++  +   + + L++ I     + +  T +   +   L+     F    
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-Y 129

Query: 62  NFSALKMLWNVKKDPATLEEERYNYI----------NW-VNDVLDSHMGLCINEFRLCFE 110
           N S L+    +++  A LE      +           W   DV  S+   C  +F++   
Sbjct: 130 NVSRLQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--- 184

Query: 111 LRNSHGSFITHWI-------FTALAKKVQKLELNLHPVG-----GGFWPPLELYAFPPEC 158
                      W+          + + +QKL   + P             L +++   E 
Sbjct: 185 ----------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 159 LKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLR---VVFSLDLLSLKV 215
            +L +S         L  L L  V  + +    F  SC +L   R   V   L   +   
Sbjct: 235 RRLLKSKP---YENCL--LVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 216 V 216
           +
Sbjct: 289 I 289

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 25/216 (11%)

Query: 21  ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCLNFSALKMLWNVKKDPATLE 80
              LPDE+L+ I S L + E  + S +  RW  L +  +      L            L 
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68

Query: 81  EERYNYINWVNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLE-LNLH 139
            +           +D  +    + FR+  +  +   S I       +  +  KL+ L+L 
Sbjct: 69  SQGVIAFRCPRSFMDQPLAEHFSPFRV--QHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126

Query: 140 PVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAV-NVSGEVLEFFIYSCPL 198
                                      TL+   +L  L L      S   L+  + SC  
Sbjct: 127 -----------------GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 199 LARLRVVFSLDL----LSLKVVGSSVKLKYLDICYC 230
           L  L + +  D     + + V   S  +  L++   
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 1  MSKRARLELDTKQDEILVDWISRLPDEILVNIISRLAVREAARTSVL-SSRWKYLWTFTT 59
            +    E + +++   V++++ LP+ +L+ +++ L   E  +   L   RWK L     
Sbjct: 31 AEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAP 90

Query: 60 CLNF 63
              
Sbjct: 91 LWLL 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.31
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.3
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.1
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.02
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.02
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.0
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.99
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.96
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.95
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.94
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.81
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.8
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.77
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.73
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.69
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.49
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.47
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.45
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.43
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.37
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.29
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.24
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.17
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.02
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.98
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.97
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.96
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.93
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.45
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.35
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.32
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.29
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.0
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	95.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.15
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.14
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.91
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	94.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	94.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.08
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.02
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	93.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	92.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.0
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	91.98
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	91.65
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	88.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	85.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	83.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	80.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	80.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	80.38

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=1e-18  Score=169.28  Aligned_cols=153  Identities=15%  Similarity=0.168  Sum_probs=90.1

Q ss_pred             cCCcCCCCChHHHHHHHhcCC-hHHHHHHHHhhhhhhhhcc-ccceeEecccccccccCCCchhhHHhHHHHHHHHHHHH
Q 019478           17 LVDWISRLPDEILVNIISRLA-VREAARTSVLSSRWKYLWT-FTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVL   94 (340)
Q Consensus        17 ~~d~~s~LPd~il~~Ils~L~-~~d~~r~~~vsk~W~~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l   94 (340)
                      +.|.|+.||||||.+||+||+ .+|+++++.|||+|+++.. ....+.+.......                   ....+
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~-------------------~~~~~   62 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS-------------------PATVI   62 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC-------------------HHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC-------------------HHHHH
Confidence            358899999999999999999 9999999999999998722 12234443221110                   01223


Q ss_pred             hhcCCCceeEEEEEEEeCC--------CCchhHHHHHHHHHh--CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCC
Q 019478           95 DSHMGLCINEFRLCFELRN--------SHGSFITHWIFTALA--KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRS  164 (340)
Q Consensus        95 ~~~~~~~l~~l~l~~~~~~--------~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~  164 (340)
                      ...  +.++.+.+......        .....+..|+.....  +++++|++..+....     .....+.         
T Consensus        63 ~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-----~~~~~l~---------  126 (594)
T 2p1m_B           63 RRF--PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD-----DCLELIA---------  126 (594)
T ss_dssp             HHC--TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-----HHHHHHH---------
T ss_pred             hhC--CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH-----HHHHHHH---------
Confidence            333  34888888654211        111345567777654  489999997653211     1111111         


Q ss_pred             CCCCCCCCCCceEEeeeE-EecHHHHHHHHhcCccceEEeeeecC
Q 019478          165 PRTLSNIKSLRSLCLDAV-NVSGEVLEFFIYSCPLLARLRVVFSL  208 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~-~i~~~~l~~lls~cp~Le~L~L~~c~  208 (340)
                          ..+++|++|+|.++ .+++.++..++.+||+|++|++.+|.
T Consensus       127 ----~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          127 ----KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             ----HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             ----HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence                24677777777776 46666677777777777777777664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=1e-19  Score=164.04  Aligned_cols=269  Identities=18%  Similarity=0.238  Sum_probs=160.7

Q ss_pred             CCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc---ccceeEecccccccccCCCchhhHHhHHHHHHHHHHHH
Q 019478           18 VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT---FTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVL   94 (340)
Q Consensus        18 ~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l   94 (340)
                      ...|+.||||++.+||+||+.+|+++++.|||+|+++..   ....+++....+.+                 ..+...+
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~-----------------~~~~~~~   68 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP-----------------DVTGRLL   68 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH-----------------HHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCH-----------------HHHHhhh
Confidence            455899999999999999999999999999999998742   12235555443321                 1122222


Q ss_pred             hhcCCCceeEEEEEEE-eCCCCchhHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCC
Q 019478           95 DSHMGLCINEFRLCFE-LRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKS  173 (340)
Q Consensus        95 ~~~~~~~l~~l~l~~~-~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~  173 (340)
                      ..    .++.+.+... .......       ...-.++++|++..+....        .          .++..+..+++
T Consensus        69 ~~----~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~l~~--------~----------~~~~~~~~~~~  119 (336)
T 2ast_B           69 SQ----GVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSVIEV--------S----------TLHGILSQCSK  119 (336)
T ss_dssp             HT----TCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCEECH--------H----------HHHHHHTTBCC
T ss_pred             hc----cceEEEcCCccccccchh-------hccCCCCCEEEccCCCcCH--------H----------HHHHHHhhCCC
Confidence            11    2555554111 0110000       0011355555553221000        0          02223367889


Q ss_pred             CceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE---eccCCCcceEEEEecCCceEE-----EEECC-cee
Q 019478          174 LRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFMEEV-----EISAP-SVR  244 (340)
Q Consensus       174 L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~l-----~i~~p-~L~  244 (340)
                      |++|+|.++.+++..... ++.|++|++|++.+|..++...+   -..+++|++|.+.+|..+++.     .-..| +|+
T Consensus       120 L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             CSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            999999888887765554 55689999999998865543111   224588999999988445532     12357 999


Q ss_pred             EEEEeccce-------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----ccc---CCcCCCcceE
Q 019478          245 SFKYYGPEI-------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----FVL---NAVSILNLKC  309 (340)
Q Consensus       245 ~l~l~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~~~---~~~~f~~L~~  309 (340)
                      +|+++++..       ...++.+++|+.+.+..+..  +.......+..+++|+.|++.     .+.   .+..+++|++
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  276 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  276 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT--CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc--CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence            999988731       12345688999998876521  111222345678999999997     122   3567889999


Q ss_pred             EEEEcCCchhhhHHHHHHHHhcccccccc
Q 019478          310 FRVVNNFLCFCLILLLFLRKICNSHNVSC  338 (340)
Q Consensus       310 L~l~~~~~~~c~~l~~~~l~~cp~~~~~~  338 (340)
                      |++.++....   ....+.+.+|.++..|
T Consensus       277 L~l~~~i~~~---~~~~l~~~l~~L~l~~  302 (336)
T 2ast_B          277 LQVFGIVPDG---TLQLLKEALPHLQINC  302 (336)
T ss_dssp             EECTTSSCTT---CHHHHHHHSTTSEESC
T ss_pred             EeccCccCHH---HHHHHHhhCcceEEec
Confidence            9998752111   1112235677766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=1.2e-18  Score=168.75  Aligned_cols=270  Identities=14%  Similarity=0.169  Sum_probs=149.9

Q ss_pred             CCCChHHHHHHHhcC-ChHHHHHHHHhhhhhhhhccccc-eeEecccccccccCCCchhhHHhHHHHHHHHHHHHhhcCC
Q 019478           22 SRLPDEILVNIISRL-AVREAARTSVLSSRWKYLWTFTT-CLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMG   99 (340)
Q Consensus        22 s~LPd~il~~Ils~L-~~~d~~r~~~vsk~W~~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~   99 (340)
                      +.||||+|.+||+|| +.+|+++++.|||+|++++...+ .+.+... +.                  .....++...+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~------------------~~~~~~~~~~~~   74 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC-YT------------------ATPDRLSRRFPN   74 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG-GG------------------SCHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec-cc------------------cChHHHHHhCCC
Confidence            479999999999999 79999999999999999854322 1222211 11                  112334444433


Q ss_pred             CceeEEEEEEEeC--------CCCchhHHHHHHHHHh--CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCC
Q 019478          100 LCINEFRLCFELR--------NSHGSFITHWIFTALA--KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLS  169 (340)
Q Consensus       100 ~~l~~l~l~~~~~--------~~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~  169 (340)
                        ++.+++..+..        .........|+.....  +++++|++..+....     .....+.             .
T Consensus        75 --L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-----~~~~~l~-------------~  134 (592)
T 3ogk_B           75 --LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-----LDLDRLA-------------K  134 (592)
T ss_dssp             --CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-----HHHHHHH-------------H
T ss_pred             --CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-----HHHHHHH-------------H
Confidence              99999865311        1223344567777664  589999997553210     0011111             1


Q ss_pred             CCCC-CceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceE------EEeccCCCcceEEEEecCCce-------
Q 019478          170 NIKS-LRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSL------KVVGSSVKLKYLDICYCYFME-------  234 (340)
Q Consensus       170 ~~~~-L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l------~i~~~~~~L~~L~l~~c~~l~-------  234 (340)
                      .+++ |++|+|.++. +++.++..++.+||+|++|+|.+|. ++..      .+...+++|++|.+.++. ++       
T Consensus       135 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l  212 (592)
T 3ogk_B          135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDL  212 (592)
T ss_dssp             HHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHH
T ss_pred             hccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHH
Confidence            2444 7888887765 6667777777778888888887774 1110      011233666777665443 11       


Q ss_pred             -EEEEECCceeEEEEeccce---eeecCCCcccceEEEeeccCc-----------------------hhhhhhhhhhccC
Q 019478          235 -EVEISAPSVRSFKYYGPEI---KLRMENVPQLLDISIGGGYGV-----------------------RMKHAISPIMSYF  287 (340)
Q Consensus       235 -~l~i~~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~~~-----------------------~~~~~~~~ll~~~  287 (340)
                       .+...+|+|++|++.++..   +-.++.+++|+++.+......                       .....+..++..+
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~  292 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA  292 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred             HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence             0111346666666655421   111333444555544321000                       0012344556677


Q ss_pred             CCcceEEEE--------cccCCcCCCcceEEEEEcCCchhhhHHHHHHHHhccccc
Q 019478          288 HQLETLELG--------FVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHN  335 (340)
Q Consensus       288 ~~L~~L~l~--------~~~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~~  335 (340)
                      ++|++|++.        ....+..+++|++|++..+..   ........+.||+++
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~---~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG---DRGLEVLAQYCKQLK  345 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH---HHHHHHHHHHCTTCC
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC---HHHHHHHHHhCCCCC
Confidence            788888876        112346777888888873211   112233456777754

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.89  E-value=8.9e-10  Score=70.40  Aligned_cols=39  Identities=33%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             CCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 019478           18 VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT   56 (340)
Q Consensus        18 ~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~   56 (340)
                      ...++.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            456899999999999999999999999999999997643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.83  E-value=6.1e-10  Score=99.75  Aligned_cols=146  Identities=18%  Similarity=0.244  Sum_probs=102.1

Q ss_pred             CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE--E--------eccCCCcceEEEEecCC
Q 019478          163 RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK--V--------VGSSVKLKYLDICYCYF  232 (340)
Q Consensus       163 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~--i--------~~~~~~L~~L~l~~c~~  232 (340)
                      .+|..+..+++|++|+|.++.+.  .+..-+..+++|++|++.+|...+.+.  +        -..+++|+.|.++++. 
T Consensus       118 ~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-  194 (328)
T 4fcg_A          118 ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-  194 (328)
T ss_dssp             CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-
T ss_pred             chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-
Confidence            34455678999999999988765  333346789999999999986543211  0        0124899999999886 


Q ss_pred             ceEEEE---ECCceeEEEEecccee---eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------ccc
Q 019478          233 MEEVEI---SAPSVRSFKYYGPEIK---LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVL  299 (340)
Q Consensus       233 l~~l~i---~~p~L~~l~l~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~  299 (340)
                      ++.+.-   ..++|+.|+++++...   -.++.+++|+.+++..+..   ...+...+.++++|+.|++.       +|.
T Consensus       195 l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA---LRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT---CCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc---hhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence            543321   2488999999887432   2356788899888875411   11233446688999999987       566


Q ss_pred             CCcCCCcceEEEEEc
Q 019478          300 NAVSILNLKCFRVVN  314 (340)
Q Consensus       300 ~~~~f~~L~~L~l~~  314 (340)
                      .+..+++|++|++.+
T Consensus       272 ~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRG  286 (328)
T ss_dssp             TGGGCTTCCEEECTT
T ss_pred             hhhcCCCCCEEeCCC
Confidence            677888999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.78  E-value=3.5e-08  Score=95.20  Aligned_cols=38  Identities=24%  Similarity=0.186  Sum_probs=24.2

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeee
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVV  205 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~  205 (340)
                      ...+++|++|+|.++.+++..+..++..||+|++|++.
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            34566677777766666666665566666666666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.72  E-value=1e-08  Score=91.78  Aligned_cols=217  Identities=15%  Similarity=0.085  Sum_probs=130.7

Q ss_pred             HHHHhhcCCCceeEEEEEEEeCCCCchhHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CC
Q 019478           91 NDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RS  164 (340)
Q Consensus        91 ~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~  164 (340)
                      ...+.......++.+++....-...+.    .+..  -.++++|++....... +  +.....++.- +|.|+     .+
T Consensus        72 ~~~l~~~~~~~l~~L~L~~n~l~~lp~----~l~~--l~~L~~L~L~~n~l~~-l--p~~~~~l~~L~~L~Ls~n~l~~l  142 (328)
T 4fcg_A           72 ADLLEDATQPGRVALELRSVPLPQFPD----QAFR--LSHLQHMTIDAAGLME-L--PDTMQQFAGLETLTLARNPLRAL  142 (328)
T ss_dssp             HHHHHHHTSTTCCEEEEESSCCSSCCS----CGGG--GTTCSEEEEESSCCCC-C--CSCGGGGTTCSEEEEESCCCCCC
T ss_pred             HHHHhcccccceeEEEccCCCchhcCh----hhhh--CCCCCEEECCCCCccc-h--hHHHhccCCCCEEECCCCccccC
Confidence            334444344568888885432211111    1111  3578999987654321 1  1111222211 66665     56


Q ss_pred             CCCCCCCCCCceEEeeeEEecHH---HH-----HHHHhcCccceEEeeeecCCcceEEEe---ccCCCcceEEEEecCCc
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGE---VL-----EFFIYSCPLLARLRVVFSLDLLSLKVV---GSSVKLKYLDICYCYFM  233 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~---~l-----~~lls~cp~Le~L~L~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l  233 (340)
                      |..+.++++|++|+|.++.+...   .+     ...+.++++|++|++.++. ++  .++   ..+++|+.|.++++. +
T Consensus       143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~L~~N~-l  218 (328)
T 4fcg_A          143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR--SLPASIANLQNLKSLKIRNSP-L  218 (328)
T ss_dssp             CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC--CCCGGGGGCTTCCEEEEESSC-C
T ss_pred             cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC--cchHhhcCCCCCCEEEccCCC-C
Confidence            66678899999999998753221   00     0012348999999999985 33  222   244789999999887 4


Q ss_pred             eEEEE---ECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------ccc
Q 019478          234 EEVEI---SAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVL  299 (340)
Q Consensus       234 ~~l~i---~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~  299 (340)
                      ..+.-   ..++|+.|+++++..    +..++.+++|+.+++..+..   ...+...+.++++|+.|++.       +|.
T Consensus       219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN---LLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT---CCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             CcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc---hhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            44321   248999999998632    33467789999998876411   11223345789999999998       677


Q ss_pred             CCcCCCcceEEEEEcCCchhhhHH
Q 019478          300 NAVSILNLKCFRVVNNFLCFCLIL  323 (340)
Q Consensus       300 ~~~~f~~L~~L~l~~~~~~~c~~l  323 (340)
                      .+..+++|+.+.+..+....+...
T Consensus       296 ~l~~L~~L~~l~l~~~~~~~l~~~  319 (328)
T 4fcg_A          296 LIAQLPANCIILVPPHLQAQLDQH  319 (328)
T ss_dssp             GGGGSCTTCEEECCGGGSCC----
T ss_pred             HHhhccCceEEeCCHHHHHHHhhh
Confidence            788888888888877555555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.55  E-value=3.9e-09  Score=94.45  Aligned_cols=174  Identities=12%  Similarity=0.098  Sum_probs=123.4

Q ss_pred             HHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccce
Q 019478          121 HWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLA  200 (340)
Q Consensus       121 ~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le  200 (340)
                      ..+.....++++.+++......                    ..+.....+++|++|+|.++.+++.++..++..||+|+
T Consensus        62 ~~~~~~~~~~l~~L~l~~n~l~--------------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           62 DVTGRLLSQGVIAFRCPRSFMD--------------------QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             HHHHHHHHTTCSEEECTTCEEC--------------------SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             HHHHhhhhccceEEEcCCcccc--------------------ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            3455555677888876432211                    22223457899999999999999888999999999999


Q ss_pred             EEeeeecCCcce--EEEeccCCCcceEEEEecCCceEE-----EEECCceeEEEEecc-cee-----eecCCCc-ccceE
Q 019478          201 RLRVVFSLDLLS--LKVVGSSVKLKYLDICYCYFMEEV-----EISAPSVRSFKYYGP-EIK-----LRMENVP-QLLDI  266 (340)
Q Consensus       201 ~L~L~~c~~~~~--l~i~~~~~~L~~L~l~~c~~l~~l-----~i~~p~L~~l~l~~~-~~~-----~~~~~~~-~L~~l  266 (340)
                      +|++.+|. ++.  ...-..+++|++|.+++|..+++.     .-..|+|++|+++++ ...     ..++.++ +|+++
T Consensus       122 ~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          122 NLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             EEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             EEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            99999995 321  111123589999999999655531     123699999999988 332     2356788 99999


Q ss_pred             EEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcceEEEEEcC
Q 019478          267 SIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNLKCFRVVNN  315 (340)
Q Consensus       267 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L~~L~l~~~  315 (340)
                      ++..+.....+..+...+..+++|+.|++.        .+..+..+++|++|++.++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            997652111124556677899999999997        2345667899999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.43  E-value=1.6e-08  Score=81.26  Aligned_cols=64  Identities=5%  Similarity=0.028  Sum_probs=43.0

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec--c----CCCcceEEEEecCCceE
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG--S----SVKLKYLDICYCYFMEE  235 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~--~----~~~L~~L~l~~c~~l~~  235 (340)
                      -.+|+.|+|+++.++|+++..+ +.|++|++|+|.+|..+++-.+..  .    +++|++|++++|+.+++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            3567888888777888777765 678888888888887766432221  1    23577777777765554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.41  E-value=3.5e-07  Score=88.12  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=41.2

Q ss_pred             CcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcceEEEEEcCCchhhhHHHHHHHHhc
Q 019478          260 VPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKIC  331 (340)
Q Consensus       260 ~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~c  331 (340)
                      +++|+.+.+..+.-  .+..+..+..++++|+.|++.        .......+++|++|++.++..  .+.....+.+.+
T Consensus       455 ~~~L~~L~L~~~~i--~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~l~~~l  530 (594)
T 2p1m_B          455 AKKMEMLSVAFAGD--SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV--SFGACKLLGQKM  530 (594)
T ss_dssp             CTTCCEEEEESCCS--SHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC--BHHHHHHHHHHC
T ss_pred             chhccEeeccCCCC--cHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC--CHHHHHHHHHhC
Confidence            45566666654311  123344455677788888877        122344577888888877544  222222244677


Q ss_pred             ccccccc
Q 019478          332 NSHNVSC  338 (340)
Q Consensus       332 p~~~~~~  338 (340)
                      |++++.+
T Consensus       531 p~l~i~~  537 (594)
T 2p1m_B          531 PKLNVEV  537 (594)
T ss_dssp             TTEEEEE
T ss_pred             CCCEEEE
Confidence            7765443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=1.5e-07  Score=75.54  Aligned_cols=67  Identities=12%  Similarity=0.111  Sum_probs=56.4

Q ss_pred             CCCCCCceEEeeeEE-ecHHHHHHHHhc---CccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceE
Q 019478          169 SNIKSLRSLCLDAVN-VSGEVLEFFIYS---CPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEE  235 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~-i~~~~l~~lls~---cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~  235 (340)
                      .+|++|+.|+|.+|. ++|+++..+...   |+.|++|+|++|..+++-.+.  ..+++|++|.+++|+.+++
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            589999999999997 999999998873   889999999999988753222  3568999999999987665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.32  E-value=9.1e-07  Score=79.67  Aligned_cols=45  Identities=16%  Similarity=0.216  Sum_probs=32.9

Q ss_pred             hhhccCCCcceEEEE------cccC-CcCCCcceEEEEEcC-CchhhhHHHHH
Q 019478          282 PIMSYFHQLETLELG------FVLN-AVSILNLKCFRVVNN-FLCFCLILLLF  326 (340)
Q Consensus       282 ~ll~~~~~L~~L~l~------~~~~-~~~f~~L~~L~l~~~-~~~~c~~l~~~  326 (340)
                      ..+.++++|+.|++.      ++.. +..+++|++|++.++ ..+.||.+..+
T Consensus       271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l  323 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  323 (353)
T ss_dssp             HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHH
Confidence            346688899999998      4444 467889999999996 44567766544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.31  E-value=6.3e-08  Score=84.59  Aligned_cols=148  Identities=14%  Similarity=0.071  Sum_probs=81.3

Q ss_pred             CCCCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE---
Q 019478          165 PRTLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI---  238 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i---  238 (340)
                      +..+.++++|++|+|.+.. +..-. ...+..+++|++|++.++.- +.+..  -..+++|+.|.++++. ++.+..   
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~  149 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA-LQALPDDTF  149 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             HhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCc-ccccCHhHh
Confidence            3445566777777776653 32210 11244566777777766641 11100  1123677777777665 333321   


Q ss_pred             -ECCceeEEEEecccee-e---ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCc
Q 019478          239 -SAPSVRSFKYYGPEIK-L---RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILN  306 (340)
Q Consensus       239 -~~p~L~~l~l~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~  306 (340)
                       ..++|+.|+++++... +   .+..+++|+.+.+....   +.......+.++++|+.|++.      + +..+..+++
T Consensus       150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  226 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR---VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc---ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence             2467777777766331 1   24556777777775441   111223345577888888887      1 233566778


Q ss_pred             ceEEEEEcCCch
Q 019478          307 LKCFRVVNNFLC  318 (340)
Q Consensus       307 L~~L~l~~~~~~  318 (340)
                      |++|++.++...
T Consensus       227 L~~L~l~~N~~~  238 (285)
T 1ozn_A          227 LQYLRLNDNPWV  238 (285)
T ss_dssp             CCEEECCSSCEE
T ss_pred             cCEEeccCCCcc
Confidence            888888875443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.30  E-value=7.4e-08  Score=83.65  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=108.4

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----ECC
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SAP  241 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~p  241 (340)
                      +..+++|++|+|.++.+.+-  . -+..+++|++|++.+|. ++.+.-  -..+++|+.|.+.++. ++.+.-    ..+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~  133 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLT  133 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred             cccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCC
Confidence            46789999999988776542  2 35679999999999885 332111  1234789999999886 554432    248


Q ss_pred             ceeEEEEecccee-e---ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEE
Q 019478          242 SVRSFKYYGPEIK-L---RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCF  310 (340)
Q Consensus       242 ~L~~l~l~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L  310 (340)
                      +|++|.++++... +   .++.+++|+.+.+..+.   +.......+.++++|+.|++.       .+..+..+++|++|
T Consensus       134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ---LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCccCccCHHHhccCccCCEEECCCCC---cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence            9999999888432 2   25678999999987652   112233446789999999998       23446788999999


Q ss_pred             EEEcC-CchhhhHHHHHHHHh
Q 019478          311 RVVNN-FLCFCLILLLFLRKI  330 (340)
Q Consensus       311 ~l~~~-~~~~c~~l~~~~l~~  330 (340)
                      ++.++ ..+.||.++.+.+..
T Consensus       211 ~l~~N~~~~~~~~l~~l~~~~  231 (272)
T 3rfs_A          211 WLHDNPWDCTCPGIRYLSEWI  231 (272)
T ss_dssp             ECCSSCBCCCTTTTHHHHHHH
T ss_pred             EccCCCccccCcHHHHHHHHH
Confidence            99986 445688887776543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.27  E-value=1.5e-07  Score=88.29  Aligned_cols=152  Identities=18%  Similarity=0.169  Sum_probs=84.1

Q ss_pred             CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----  238 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----  238 (340)
                      +..+.++++|+.|+|.++.++.-. ...+..+++|+.|++.++.- ..+.-  -..+++|+.|.+.+|..+..+..    
T Consensus       145 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  222 (477)
T 2id5_A          145 HRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY  222 (477)
T ss_dssp             TTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred             hhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCccccc
Confidence            345678899999999888765321 23467789999999988742 21100  01235677777776654333221    


Q ss_pred             -----------------------ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcc
Q 019478          239 -----------------------SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLE  291 (340)
Q Consensus       239 -----------------------~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~  291 (340)
                                             ..++|+.|+++++...    ..+..+++|+++.+...   .+.......+.++++|+
T Consensus       223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~  299 (477)
T 2id5_A          223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG---QLAVVEPYAFRGLNYLR  299 (477)
T ss_dssp             TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS---CCSEECTTTBTTCTTCC
T ss_pred             CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC---ccceECHHHhcCcccCC
Confidence                                   1244555555444221    11344555555555433   11111223355677778


Q ss_pred             eEEEE------c-ccCCcCCCcceEEEEEcCCch-hhh
Q 019478          292 TLELG------F-VLNAVSILNLKCFRVVNNFLC-FCL  321 (340)
Q Consensus       292 ~L~l~------~-~~~~~~f~~L~~L~l~~~~~~-~c~  321 (340)
                      .|++.      + +..+..+++|++|++.++... .|.
T Consensus       300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             EEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            77776      2 233456778888888776544 343

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.24  E-value=1.5e-07  Score=77.49  Aligned_cols=140  Identities=13%  Similarity=0.125  Sum_probs=92.5

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceE--E-EE-ECCcee
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEE--V-EI-SAPSVR  244 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~--l-~i-~~p~L~  244 (340)
                      ..+++|+.|++.+..+.+  +. -+..+++|++|++.+| .+..+..-..+++|+.|.++++. ++.  . .+ ..|+|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCC
Confidence            467788888888776653  12 1567888888888888 33333222344788888888876 332  1 11 248888


Q ss_pred             EEEEeccce----eeecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE---c--ccCCcCCCcceEEEEEc
Q 019478          245 SFKYYGPEI----KLRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG---F--VLNAVSILNLKCFRVVN  314 (340)
Q Consensus       245 ~l~l~~~~~----~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~---~--~~~~~~f~~L~~L~l~~  314 (340)
                      .|.++++..    .-.++.+++|+++.+..+. -..    + ..+.++++|+.|++.   +  ...+..+++|++|++.+
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~----~-~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD----I-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS  190 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC----C-GGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc----c-HhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence            888887743    2236788999999987653 211    1 246789999999997   1  12567888999999988


Q ss_pred             CCch
Q 019478          315 NFLC  318 (340)
Q Consensus       315 ~~~~  318 (340)
                      +.++
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            6543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.21  E-value=2.4e-07  Score=86.46  Aligned_cols=148  Identities=14%  Similarity=0.140  Sum_probs=101.1

Q ss_pred             CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE--ECC
Q 019478          166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI--SAP  241 (340)
Q Consensus       166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i--~~p  241 (340)
                      ..+.++++|++|+|.+..+..- -...+..+++|+.|++.+|..+..+...  ..+++|+.|.++++. ++.+.-  ..+
T Consensus       141 ~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~  218 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLV  218 (452)
T ss_dssp             TTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCT
T ss_pred             hhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccc
Confidence            3467789999999988765421 1123567899999999988766653221  234789999998876 444321  247


Q ss_pred             ceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEE
Q 019478          242 SVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCF  310 (340)
Q Consensus       242 ~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L  310 (340)
                      +|+.|+++++..    +..+.++++|+.+.+....   +.......+.++++|+.|+|.      + +..+..+++|++|
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ---VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCc---CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence            899999988743    2346788899998886541   122223446789999999998      2 3446678899999


Q ss_pred             EEEcCCch
Q 019478          311 RVVNNFLC  318 (340)
Q Consensus       311 ~l~~~~~~  318 (340)
                      ++.++...
T Consensus       296 ~L~~Np~~  303 (452)
T 3zyi_A          296 HLHHNPWN  303 (452)
T ss_dssp             ECCSSCEE
T ss_pred             EccCCCcC
Confidence            99986443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.18  E-value=3.1e-07  Score=80.98  Aligned_cols=142  Identities=13%  Similarity=0.155  Sum_probs=72.6

Q ss_pred             CCCCCCCceEEeeeEEecHHH-HHHHHhcCccceEEeeeecCCcceEE-EeccCCCcceEEEEecCCceEEEE-----EC
Q 019478          168 LSNIKSLRSLCLDAVNVSGEV-LEFFIYSCPLLARLRVVFSLDLLSLK-VVGSSVKLKYLDICYCYFMEEVEI-----SA  240 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~-l~~lls~cp~Le~L~L~~c~~~~~l~-i~~~~~~L~~L~l~~c~~l~~l~i-----~~  240 (340)
                      +.++++|++|+|.+..+...+ .......+++|++|++.++. +..+. .-..+++|++|.+.++. ++.+..     ..
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l  125 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL  125 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTC
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhc
Confidence            578899999999877654211 01123468899999998885 22221 11234777777776654 222111     12


Q ss_pred             CceeEEEEecccee----eecCCCcccceEEEeeccCchhhh-hhhhhhccCCCcceEEEE-------cccCCcCCCcce
Q 019478          241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKH-AISPIMSYFHQLETLELG-------FVLNAVSILNLK  308 (340)
Q Consensus       241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~-~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~  308 (340)
                      ++|+.|.++++...    ..++.+++|+.+.+...   .+.. .....+..+++|+.|++.       .+..+..+++|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN---SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC---EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCC---ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            56666666655321    12344555665555432   1000 122333445555555554       123334444555


Q ss_pred             EEEEEc
Q 019478          309 CFRVVN  314 (340)
Q Consensus       309 ~L~l~~  314 (340)
                      +|++.+
T Consensus       203 ~L~L~~  208 (306)
T 2z66_A          203 VLNMSH  208 (306)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.18  E-value=3.5e-07  Score=85.31  Aligned_cols=146  Identities=14%  Similarity=0.019  Sum_probs=100.7

Q ss_pred             CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec----cCCCcceEEEEecCCceEEEEE--
Q 019478          166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG----SSVKLKYLDICYCYFMEEVEIS--  239 (340)
Q Consensus       166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~----~~~~L~~L~l~~c~~l~~l~i~--  239 (340)
                      ..+.++++|++|+|.+..+..- ....+..+++|++|+|.++. +..  ++.    .+++|+.|.+.+|..++.+...  
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~  192 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNP-IES--IPSYAFNRVPSLMRLDLGELKKLEYISEGAF  192 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCC-CCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred             hhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCC-cce--eCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence            4567888999999987765421 11224568889999998885 332  221    3478999999888777766532  


Q ss_pred             --CCceeEEEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcce
Q 019478          240 --APSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLK  308 (340)
Q Consensus       240 --~p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~  308 (340)
                        .++|+.|+++++...  -.+..+++|+.+++...   .+.......+.++++|+.|.+.       .+..+..+++|+
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN---HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             TTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS---CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cCCCCCCEEECCCCcccccccccccccccEEECcCC---cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence              488999998877432  13566788888888654   1122233456789999999997       355677889999


Q ss_pred             EEEEEcCCch
Q 019478          309 CFRVVNNFLC  318 (340)
Q Consensus       309 ~L~l~~~~~~  318 (340)
                      +|++.++.+.
T Consensus       270 ~L~L~~N~l~  279 (452)
T 3zyi_A          270 ELNLAHNNLS  279 (452)
T ss_dssp             EEECCSSCCS
T ss_pred             EEECCCCcCC
Confidence            9999985443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.16  E-value=7.3e-07  Score=84.06  Aligned_cols=95  Identities=14%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCceeEE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVRSF  246 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l  246 (340)
                      +..+++|++|+|.++.+++.. .  +..+++|++|+|.++. ++.+.   ..++|+.|.++++. +..+... .|+|+.|
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L  125 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNI  125 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEE
T ss_pred             HhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEE
Confidence            346666666666655433210 0  4556666666666663 22221   11566666666654 3333222 3556666


Q ss_pred             EEeccce----eeecCCCcccceEEEee
Q 019478          247 KYYGPEI----KLRMENVPQLLDISIGG  270 (340)
Q Consensus       247 ~l~~~~~----~~~~~~~~~L~~l~l~~  270 (340)
                      .++++..    +..++.+++|+.+++..
T Consensus       126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  153 (487)
T 3oja_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKL  153 (487)
T ss_dssp             ECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred             ECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence            6655532    22234455555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.16  E-value=2.9e-07  Score=85.59  Aligned_cols=147  Identities=13%  Similarity=0.166  Sum_probs=101.5

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE--ECCc
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI--SAPS  242 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i--~~p~  242 (340)
                      .+.++++|++|+|.+..+..- -...+..+++|++|++.+|..+..+...  ..+++|+.|.++++. ++.+.-  ..++
T Consensus       131 ~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~  208 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIK  208 (440)
T ss_dssp             TSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSS
T ss_pred             HhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcc
Confidence            467889999999988765421 0112567899999999988766543221  234789999998886 544321  2478


Q ss_pred             eeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEE
Q 019478          243 VRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFR  311 (340)
Q Consensus       243 L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~  311 (340)
                      |+.|+++++...    ..+.++++|+++.+...   .+.......+.++++|+.|+|.      + +..+..+++|+.|+
T Consensus       209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  285 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS---QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH  285 (440)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTC---CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred             cCEEECCCCccCccChhhhccCccCCEEECCCC---ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence            999999887432    24677889999888654   1122223456789999999998      2 34466789999999


Q ss_pred             EEcCCch
Q 019478          312 VVNNFLC  318 (340)
Q Consensus       312 l~~~~~~  318 (340)
                      +.+|...
T Consensus       286 L~~Np~~  292 (440)
T 3zyj_A          286 LHHNPWN  292 (440)
T ss_dssp             CCSSCEE
T ss_pred             cCCCCcc
Confidence            9986543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.14  E-value=8.9e-07  Score=78.56  Aligned_cols=75  Identities=13%  Similarity=0.073  Sum_probs=32.0

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCceeEEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVRSFK  247 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l~  247 (340)
                      ..+++|++|+|.++.+....  . +..+++|++|++.++. ++.+.   ..++|+.|.++++. +..+... .++|+.|.
T Consensus        55 ~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~  126 (317)
T 3o53_A           55 APFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIY  126 (317)
T ss_dssp             TTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEE
T ss_pred             hCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEE
Confidence            34555555555544332110  0 3445555555555552 22211   11455555555543 3332222 24455555


Q ss_pred             Eecc
Q 019478          248 YYGP  251 (340)
Q Consensus       248 l~~~  251 (340)
                      ++++
T Consensus       127 l~~N  130 (317)
T 3o53_A          127 LANN  130 (317)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            4444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.12  E-value=2.8e-07  Score=81.56  Aligned_cols=174  Identities=12%  Similarity=0.116  Sum_probs=95.4

Q ss_pred             CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEE
Q 019478          129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARL  202 (340)
Q Consensus       129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L  202 (340)
                      .++++|.+..+....    ......++.- .|.|+     .++. +..+++|++|+|.++.+.+-  . -+..+++|++|
T Consensus        41 ~~L~~L~l~~~~i~~----l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L  112 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT----IEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL  112 (308)
T ss_dssp             HTCCEEECTTSCCCC----CTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred             CCcCEEEeeCCCccC----chhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence            478888875443221    0111111111 55554     2222 56677777777777665432  1 25567777777


Q ss_pred             eeeecCCcceEEEeccCCCcceEEEEecCCceEEE-E-ECCceeEEEEecccee-e-ecCCCcccceEEEeeccCchhhh
Q 019478          203 RVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-I-SAPSVRSFKYYGPEIK-L-RMENVPQLLDISIGGGYGVRMKH  278 (340)
Q Consensus       203 ~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~l~l~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~  278 (340)
                      ++.+|. ++.+.--..+++|+.|.++++. ++.+. + ..++|+.|.++++... + .+..+++|+.+.+....-..+. 
T Consensus       113 ~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-  189 (308)
T 1h6u_A          113 DLTSTQ-ITDVTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-  189 (308)
T ss_dssp             ECTTSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-
T ss_pred             ECCCCC-CCCchhhcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh-
Confidence            777774 2221111234677777777765 33321 1 2477777777766331 1 1566777777777654111111 


Q ss_pred             hhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCch
Q 019478          279 AISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       279 ~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                         . +..+++|+.|++.      ++ .+..+++|++|++.++.+.
T Consensus       190 ---~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          190 ---P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             ---G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEE
T ss_pred             ---h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeee
Confidence               1 5577788888876      22 2556778888888774433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.10  E-value=5.2e-07  Score=80.92  Aligned_cols=142  Identities=17%  Similarity=0.220  Sum_probs=80.4

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE-E-ECCceeE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-I-SAPSVRS  245 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~  245 (340)
                      +.++++|++|++.++.+.+-.  . +..+++|+.|++.+|.....+..-..+++|+.|.+.+|. +..+. + ..++|+.
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYS  181 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             HcCCCcCCEEECcCCcccCch--h-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence            456666666666665544311  1 455666666666666543322212234667777776665 22211 1 2467777


Q ss_pred             EEEecccee-e-ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCc
Q 019478          246 FKYYGPEIK-L-RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFL  317 (340)
Q Consensus       246 l~l~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~  317 (340)
                      |+++++... + .+..+++|+.+.+....-....     .+..+++|+.|++.      .+. +..+++|++|++.++.+
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT-----PVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCCc-----hhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc
Confidence            777766331 1 1455667777666544111101     15678888888887      222 66788889998888544


Q ss_pred             hh
Q 019478          318 CF  319 (340)
Q Consensus       318 ~~  319 (340)
                      ..
T Consensus       256 ~~  257 (347)
T 4fmz_A          256 SD  257 (347)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.09  E-value=5.8e-07  Score=86.90  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=38.0

Q ss_pred             CceeEEEEecccee-----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcc
Q 019478          241 PSVRSFKYYGPEIK-----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNL  307 (340)
Q Consensus       241 p~L~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L  307 (340)
                      ++|+.|.+.++...     ..+..+++|+.+.+..+.   +.......+.++++|+.|++.        .+..+..+++|
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  475 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN---TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL  475 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC---CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCC---CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence            55555555544221     123445555555554331   111122345567777777775        24455667778


Q ss_pred             eEEEEEcC
Q 019478          308 KCFRVVNN  315 (340)
Q Consensus       308 ~~L~l~~~  315 (340)
                      ++|++.++
T Consensus       476 ~~L~Ls~n  483 (606)
T 3vq2_A          476 TFLDLSKC  483 (606)
T ss_dssp             CEEECTTS
T ss_pred             CEEECCCC
Confidence            88877763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.09  E-value=4.9e-07  Score=78.31  Aligned_cols=149  Identities=17%  Similarity=0.167  Sum_probs=98.3

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----EC
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SA  240 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~  240 (340)
                      .+.++++|++|+|.+..+..- -..++..+++|++|++.++. +..+..  -..+++|+.|.+.++. ++.+..    ..
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  132 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSL  132 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcC
Confidence            467889999999987765421 11234568899999998875 222111  1234788999998875 444332    24


Q ss_pred             CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceE
Q 019478          241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~  309 (340)
                      ++|++|+++++...    ..++.+++|+++.+....   +.......+.++++|+.|++.      ++ ..+..+++|+.
T Consensus       133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (270)
T 2o6q_A          133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ---LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM  209 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCccCHhHccCCcccceeEecCCc---CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence            88999999887432    125678999999887551   111222345688999999997      23 34667889999


Q ss_pred             EEEEcCCc-hhhh
Q 019478          310 FRVVNNFL-CFCL  321 (340)
Q Consensus       310 L~l~~~~~-~~c~  321 (340)
                      |++.++.. +.|.
T Consensus       210 L~l~~N~~~c~c~  222 (270)
T 2o6q_A          210 LQLQENPWDCTCN  222 (270)
T ss_dssp             EECCSSCBCCSSS
T ss_pred             EEecCCCeeCCCc
Confidence            99998643 3443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.09  E-value=6e-07  Score=80.54  Aligned_cols=176  Identities=23%  Similarity=0.226  Sum_probs=114.1

Q ss_pred             CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CCCCCCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceE
Q 019478          129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RSPRTLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLAR  201 (340)
Q Consensus       129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~  201 (340)
                      +++++|.+..+....    ......++.- +|.+.     ..+. +..+++|+.|++.++. +.+  +.. +..++.|++
T Consensus        88 ~~L~~L~L~~n~i~~----~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~--~~~-~~~l~~L~~  159 (347)
T 4fmz_A           88 VKLTNLYIGTNKITD----ISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSD--LSP-LSNMTGLNY  159 (347)
T ss_dssp             TTCCEEECCSSCCCC----CGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCC--CGG-GTTCTTCCE
T ss_pred             CcCCEEEccCCcccC----chHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccc--ccc-hhhCCCCcE
Confidence            578888886553221    1111111111 66666     2232 5789999999998874 322  111 678999999


Q ss_pred             EeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeEEEEecccee--eecCCCcccceEEEeeccCchhh
Q 019478          202 LRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMK  277 (340)
Q Consensus       202 L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~  277 (340)
                      |++.+|.-..... -..+++|+.|.+++|. +.++.  -..++|+.+.+.++...  ..+..+++|+++.+..+.-....
T Consensus       160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             EEecCCCcCCchh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc
Confidence            9999986322111 2345899999999886 44332  12588999999877432  12677899999998765221111


Q ss_pred             hhhhhhhccCCCcceEEEE-----cccCCcCCCcceEEEEEcCCchh
Q 019478          278 HAISPIMSYFHQLETLELG-----FVLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       278 ~~~~~ll~~~~~L~~L~l~-----~~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                          . +..+++|+.|++.     ....+..+++|++|++.++.+..
T Consensus       238 ----~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          238 ----P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             ----G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ----c-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC
Confidence                1 6789999999998     12346788899999999865544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.07  E-value=3.2e-06  Score=77.13  Aligned_cols=140  Identities=19%  Similarity=0.246  Sum_probs=75.3

Q ss_pred             CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCcee
Q 019478          166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVR  244 (340)
Q Consensus       166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~  244 (340)
                      ..+.++++|++|++.+..++.-.    +..++.|+.|++.++. ++.+...   ++|+.|.++++. +..+... .++|+
T Consensus       159 ~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~-l~~~~~~---~~L~~L~l~~n~-l~~~~~~~~~~L~  229 (390)
T 3o6n_A          159 DTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTLAIP---IAVEELDASHNS-INVVRGPVNVELT  229 (390)
T ss_dssp             TTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSC-CSEEECC---SSCSEEECCSSC-CCEEECCCCSSCC
T ss_pred             hhccCCCCCCEEECCCCcCCccc----cccccccceeeccccc-ccccCCC---CcceEEECCCCe-eeecccccccccc
Confidence            34567778888888776654422    3456777777777663 3332222   567777776665 4433222 25666


Q ss_pred             EEEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCC
Q 019478          245 SFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNF  316 (340)
Q Consensus       245 ~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~  316 (340)
                      .|.+.++...  -.++.+++|+++.+....   +.......+.++++|+.|.+.      ++.....+++|++|++.++.
T Consensus       230 ~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          230 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNE---LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSC---CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             EEECCCCCCcccHHHcCCCCccEEECCCCc---CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence            6666655321  124455666666665431   111122334456666666665      33334455666666666543


Q ss_pred             c
Q 019478          317 L  317 (340)
Q Consensus       317 ~  317 (340)
                      +
T Consensus       307 l  307 (390)
T 3o6n_A          307 L  307 (390)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.07  E-value=2.5e-06  Score=75.60  Aligned_cols=99  Identities=16%  Similarity=0.162  Sum_probs=71.6

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY  248 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l  248 (340)
                      ..+++|++|+|.++.+.+-. ...+..+++|++|++.++.-..... -..+++|+.|.++++. ++.+. ..|+|+.|.+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l  106 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA  106 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred             ccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence            46789999999988765421 2336789999999999986332223 3355899999999986 77665 3599999999


Q ss_pred             eccce-eeecCCCcccceEEEeec
Q 019478          249 YGPEI-KLRMENVPQLLDISIGGG  271 (340)
Q Consensus       249 ~~~~~-~~~~~~~~~L~~l~l~~~  271 (340)
                      +++.. ......+++|+.+.+...
T Consensus       107 ~~n~l~~~~~~~~~~L~~L~l~~N  130 (317)
T 3o53_A          107 ANNNISRVSCSRGQGKKNIYLANN  130 (317)
T ss_dssp             CSSCCSEEEECCCSSCEEEECCSS
T ss_pred             CCCccCCcCccccCCCCEEECCCC
Confidence            98753 334455677777776544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.06  E-value=1.8e-06  Score=74.90  Aligned_cols=38  Identities=24%  Similarity=0.606  Sum_probs=34.6

Q ss_pred             CcCCCCChHHHHHHHhcCChHHHH-HHHHhhhhhhhhcc
Q 019478           19 DWISRLPDEILVNIISRLAVREAA-RTSVLSSRWKYLWT   56 (340)
Q Consensus        19 d~~s~LPd~il~~Ils~L~~~d~~-r~~~vsk~W~~lw~   56 (340)
                      ..+..||+|++.+||++||.++++ ++++|||+|+.+..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            467899999999999999999999 99999999998643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.05  E-value=1.7e-06  Score=82.54  Aligned_cols=150  Identities=13%  Similarity=0.125  Sum_probs=91.7

Q ss_pred             CCCCCCCceEEeeeEEecHHH-HHHHHhcCccceEEeeeecCCcceEEEe---ccCCCcceEEEEecCCceEEEEE-CCc
Q 019478          168 LSNIKSLRSLCLDAVNVSGEV-LEFFIYSCPLLARLRVVFSLDLLSLKVV---GSSVKLKYLDICYCYFMEEVEIS-APS  242 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~-l~~lls~cp~Le~L~L~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~l~i~-~p~  242 (340)
                      ...+++|++|+|.++.+.+-. ....+..+++|++|++.+|. ++.  ++   ...++|+.|.++++. ++.+.-. .++
T Consensus       357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~  432 (549)
T 2z81_A          357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHP--MPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQT  432 (549)
T ss_dssp             TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCC--CCSCCCCCTTCCEEECTTSC-CSCCCTTSCTT
T ss_pred             hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-Ccc--CChhhcccccccEEECCCCC-cccccchhcCC
Confidence            345666666666665554321 22345566677777776663 221  11   123567777777665 3332211 257


Q ss_pred             eeEEEEeccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEEcC
Q 019478          243 VRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNN  315 (340)
Q Consensus       243 L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~  315 (340)
                      |+.|+++++......+.+++|+++++....-..    +.. ...+++|+.|++.       .+..+..+++|+.|++.++
T Consensus       433 L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~----ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          433 LEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT----LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             CSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS----CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             ceEEECCCCChhhhcccCChhcEEECCCCccCc----CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence            888888877554345678899999887652111    111 2468899999998       2345678899999999996


Q ss_pred             -CchhhhHHHHH
Q 019478          316 -FLCFCLILLLF  326 (340)
Q Consensus       316 -~~~~c~~l~~~  326 (340)
                       ..+.||.+..+
T Consensus       508 ~~~~~~~~~~~l  519 (549)
T 2z81_A          508 PWDCSCPRIDYL  519 (549)
T ss_dssp             CBCCCHHHHHHH
T ss_pred             CccCCCccHHHH
Confidence             55678865544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.04  E-value=3.3e-07  Score=87.87  Aligned_cols=150  Identities=14%  Similarity=0.077  Sum_probs=73.7

Q ss_pred             CCCCCCceEEeeeEEecHHH-HHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceE------------
Q 019478          169 SNIKSLRSLCLDAVNVSGEV-LEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEE------------  235 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~-l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~------------  235 (340)
                      ..+++|+.|++.++.+.... ....+.++++|+.|++.+|.-......-..+++|+.|.+.++. +..            
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccccchhhhhcCCC
Confidence            56777777777765543211 1122556778888888777421111101223555555555432 111            


Q ss_pred             ---EEE--------------ECCceeEEEEeccce-----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceE
Q 019478          236 ---VEI--------------SAPSVRSFKYYGPEI-----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETL  293 (340)
Q Consensus       236 ---l~i--------------~~p~L~~l~l~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L  293 (340)
                         +.+              ..++|+.|.+.++..     +..++.+++|+.+++..+   .+.......+.++++|+.|
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC---QLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS---CCCEECTTTTTTCTTCCEE
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC---ccccCChhhhhcccCCCEE
Confidence               000              124455555544421     122344555555555433   1111112334566777777


Q ss_pred             EEE-------cccCCcCCCcceEEEEEcCCch-hhhH
Q 019478          294 ELG-------FVLNAVSILNLKCFRVVNNFLC-FCLI  322 (340)
Q Consensus       294 ~l~-------~~~~~~~f~~L~~L~l~~~~~~-~c~~  322 (340)
                      ++.       .+..+..+++|++|++.++... .||.
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            776       2234566777788887775433 3554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.04  E-value=5.5e-07  Score=83.73  Aligned_cols=147  Identities=12%  Similarity=0.055  Sum_probs=92.4

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEEE----C
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEIS----A  240 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i~----~  240 (340)
                      .+.++++|++|+|.+..++.-. ...+..+++|++|++.++. +..+.-  -..+++|+.|.+.++..+..+...    .
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  184 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL  184 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence            3456778888888776654210 1124567778888887764 222110  013477888888877666655432    4


Q ss_pred             CceeEEEEeccceee--ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEE
Q 019478          241 PSVRSFKYYGPEIKL--RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFR  311 (340)
Q Consensus       241 p~L~~l~l~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~  311 (340)
                      ++|+.|+++++....  .+..+++|+.+++...   .+.......+.++++|+.|.+.       .+..+..+++|++|+
T Consensus       185 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (440)
T 3zyj_A          185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN---HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN  261 (440)
T ss_dssp             SSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred             cccCeecCCCCcCccccccCCCcccCEEECCCC---ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence            788888888774321  2556778888877654   1122223456788999999987       345677888999999


Q ss_pred             EEcCCch
Q 019478          312 VVNNFLC  318 (340)
Q Consensus       312 l~~~~~~  318 (340)
                      +.++.+.
T Consensus       262 L~~N~l~  268 (440)
T 3zyj_A          262 LAHNNLT  268 (440)
T ss_dssp             CTTSCCC
T ss_pred             CCCCCCC
Confidence            9885443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.02  E-value=1.1e-06  Score=77.72  Aligned_cols=153  Identities=14%  Similarity=0.237  Sum_probs=97.9

Q ss_pred             CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEE
Q 019478          129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARL  202 (340)
Q Consensus       129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L  202 (340)
                      +++++|++..+.-..    ......++.- .|.|+     .++ .+..+++|+.|++.++.+.+-  .. +..+++|++|
T Consensus        63 ~~L~~L~L~~n~i~~----~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L  134 (308)
T 1h6u_A           63 NNLIGLELKDNQITD----LAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVL  134 (308)
T ss_dssp             TTCCEEECCSSCCCC----CGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEE
T ss_pred             CCCCEEEccCCcCCC----ChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEE
Confidence            578889886553321    1111112211 66666     222 457889999999998876542  22 6789999999


Q ss_pred             eeeecCCcceEEEeccCCCcceEEEEecCCceEEE-E-ECCceeEEEEecccee--eecCCCcccceEEEeeccCchhhh
Q 019478          203 RVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-I-SAPSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKH  278 (340)
Q Consensus       203 ~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~  278 (340)
                      ++.++. ++.+..-..+++|+.|.++++. ++++. + ..++|+.|+++++...  ..+..+++|+++.+....-.... 
T Consensus       135 ~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~-  211 (308)
T 1h6u_A          135 YLDLNQ-ITNISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS-  211 (308)
T ss_dssp             ECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG-
T ss_pred             ECCCCc-cCcCccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc-
Confidence            999885 2221112344889999999885 44432 1 2488999999887432  12567888999888765211111 


Q ss_pred             hhhhhhccCCCcceEEEE
Q 019478          279 AISPIMSYFHQLETLELG  296 (340)
Q Consensus       279 ~~~~ll~~~~~L~~L~l~  296 (340)
                         . +..+++|+.|++.
T Consensus       212 ---~-l~~l~~L~~L~l~  225 (308)
T 1h6u_A          212 ---P-LANTSNLFIVTLT  225 (308)
T ss_dssp             ---G-GTTCTTCCEEEEE
T ss_pred             ---c-ccCCCCCCEEEcc
Confidence               1 5789999999998

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.02  E-value=5.2e-07  Score=82.29  Aligned_cols=149  Identities=15%  Similarity=0.077  Sum_probs=78.9

Q ss_pred             CCCCCCceEEeeeEEecHHH---HHHHHhcCccceEEeeeecCCcceE---EEec---cC---------CCcceEEEEec
Q 019478          169 SNIKSLRSLCLDAVNVSGEV---LEFFIYSCPLLARLRVVFSLDLLSL---KVVG---SS---------VKLKYLDICYC  230 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~---l~~lls~cp~Le~L~L~~c~~~~~l---~i~~---~~---------~~L~~L~l~~c  230 (340)
                      ..+++|++|+|.++.+++.+   +...+..+++|++|+|.+|.- +..   .+..   ..         ++|++|.+++|
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            35677777777777666542   344456677777777777742 110   0110   11         56777777766


Q ss_pred             CCce--EEE------EECCceeEEEEecccee------e---ecCCCcccceEEEeeccC-chhhhhhhhhhccCCCcce
Q 019478          231 YFME--EVE------ISAPSVRSFKYYGPEIK------L---RMENVPQLLDISIGGGYG-VRMKHAISPIMSYFHQLET  292 (340)
Q Consensus       231 ~~l~--~l~------i~~p~L~~l~l~~~~~~------~---~~~~~~~L~~l~l~~~~~-~~~~~~~~~ll~~~~~L~~  292 (340)
                      . ++  .+.      -..++|++|.++++...      +   .+..+++|+.+.+..+.- ......+...+..+++|+.
T Consensus       170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          170 R-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             C-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             C-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            5 22  111      12467777777665322      1   244566777776654411 0001223344566777777


Q ss_pred             EEEE-----------cccCC--cCCCcceEEEEEcCCchh
Q 019478          293 LELG-----------FVLNA--VSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       293 L~l~-----------~~~~~--~~f~~L~~L~l~~~~~~~  319 (340)
                      |+|.           ++..+  ..+++|++|++.++.+..
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            7775           12222  226677777776654443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.00  E-value=2.5e-06  Score=79.99  Aligned_cols=151  Identities=15%  Similarity=0.083  Sum_probs=82.5

Q ss_pred             CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE--EeccCCCcceEEEEecCCceEEEE----
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK--VVGSSVKLKYLDICYCYFMEEVEI----  238 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~l~i----  238 (340)
                      |..+.++++|++|+|.+..+..-. ...+.++++|++|+|.++.- ..+.  .-..+++|+.|.+.++. +..+..    
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  149 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDND-LVYISHRAFS  149 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTT-CCEECTTSST
T ss_pred             hhhhhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCc-cceeChhhcc
Confidence            344566677777777665543210 11234567777777776642 1110  00133677777777664 443321    


Q ss_pred             ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcc
Q 019478          239 SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNL  307 (340)
Q Consensus       239 ~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L  307 (340)
                      ..++|+.|.+.++...    ..+..+++|+.+.+....-.   ......+..+++|+.|++.       ++.......+|
T Consensus       150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN---AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC---EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc---EeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence            1367777777766321    12556777777777654111   1122335577788888887       23333444588


Q ss_pred             eEEEEEcCCchhhh
Q 019478          308 KCFRVVNNFLCFCL  321 (340)
Q Consensus       308 ~~L~l~~~~~~~c~  321 (340)
                      ++|++..+.+...|
T Consensus       227 ~~L~l~~n~l~~~~  240 (477)
T 2id5_A          227 TSLSITHCNLTAVP  240 (477)
T ss_dssp             SEEEEESSCCCSCC
T ss_pred             cEEECcCCcccccC
Confidence            88888886554433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.00  E-value=2.6e-07  Score=80.62  Aligned_cols=147  Identities=15%  Similarity=0.147  Sum_probs=78.7

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----ECC
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SAP  241 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~p  241 (340)
                      +..+++|++|+|.+..+.+-. ...+..+++|++|++.++..++.+..  -..+++|+.|.+.++. +..+..    ..+
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  129 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA  129 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred             cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence            456677777777665443210 11244567777777777653332211  1123667777776665 333211    136


Q ss_pred             ceeEEEEecccee-e---ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEE
Q 019478          242 SVRSFKYYGPEIK-L---RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCF  310 (340)
Q Consensus       242 ~L~~l~l~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L  310 (340)
                      +|+.|.+.++... +   .++.+++|+.+++....   +.......+.++++|+.|++.       .+..+..+++|++|
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR---ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCCc---ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence            7777777665321 1   14556677777665431   111122234566777777776       24555666677777


Q ss_pred             EEEcCCchh
Q 019478          311 RVVNNFLCF  319 (340)
Q Consensus       311 ~l~~~~~~~  319 (340)
                      ++.++.+..
T Consensus       207 ~l~~n~l~~  215 (285)
T 1ozn_A          207 YLFANNLSA  215 (285)
T ss_dssp             ECCSSCCSC
T ss_pred             eCCCCcCCc
Confidence            777654443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.99  E-value=3.4e-06  Score=81.55  Aligned_cols=141  Identities=19%  Similarity=0.241  Sum_probs=75.8

Q ss_pred             CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCcee
Q 019478          166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVR  244 (340)
Q Consensus       166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~  244 (340)
                      ..+.++++|+.|+|.++.+..-.    +..++.|+.|++.++. ++.+..+   .+|+.|.++++. +..+... .++|+
T Consensus       165 ~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~-l~~l~~~---~~L~~L~ls~n~-l~~~~~~~~~~L~  235 (597)
T 3oja_B          165 DTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTLAIP---IAVEELDASHNS-INVVRGPVNVELT  235 (597)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSC-CSEEECC---TTCSEEECCSSC-CCEEECSCCSCCC
T ss_pred             hhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCc-cccccCC---chhheeeccCCc-ccccccccCCCCC
Confidence            34567777777777766654321    3456777777777663 3333222   567777776665 3333221 25666


Q ss_pred             EEEEeccce--eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCC
Q 019478          245 SFKYYGPEI--KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNF  316 (340)
Q Consensus       245 ~l~l~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~  316 (340)
                      .|.++++..  .-.++.+++|+.+.+....   +.......+.++++|+.|+|.      ++.....+++|+.|++.++.
T Consensus       236 ~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNE---LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSC---CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCChhhccCCCCCEEECCCCc---cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence            666665532  1224556666666665431   111122334456666666665      33444455666666666644


Q ss_pred             ch
Q 019478          317 LC  318 (340)
Q Consensus       317 ~~  318 (340)
                      +.
T Consensus       313 l~  314 (597)
T 3oja_B          313 LL  314 (597)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.99  E-value=9.5e-07  Score=79.82  Aligned_cols=144  Identities=18%  Similarity=0.236  Sum_probs=91.5

Q ss_pred             CCCCCCceEEeeeEEec--------HHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceE-----
Q 019478          169 SNIKSLRSLCLDAVNVS--------GEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEE-----  235 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~--------~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~-----  235 (340)
                      ..+++|+.|.+..+...        ..++..++..+|+|++|.|.++.+.....+  .+++|++|.+..|. +..     
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~-l~~~~l~~  212 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGG-LPDSVVED  212 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSB-CCHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCC-CChHHHHH
Confidence            46899999998764321        124778899999999999998854332122  24899999998775 321     


Q ss_pred             EEE-ECCceeEEEEecc--c------e-----eeecCCCcccceEEEeeccCchhhhhhhhhh--ccCCCcceEEEE---
Q 019478          236 VEI-SAPSVRSFKYYGP--E------I-----KLRMENVPQLLDISIGGGYGVRMKHAISPIM--SYFHQLETLELG---  296 (340)
Q Consensus       236 l~i-~~p~L~~l~l~~~--~------~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll--~~~~~L~~L~l~---  296 (340)
                      +.. ..|+|+.|+++..  .      .     .+....+|+|+.+.+..+.-.  +.....+.  ..+++|++|+|+   
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~--~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ--NVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH--HHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc--hHHHHHHHhCccCCCCCEEECCCCC
Confidence            111 4699999998521  0      0     112235789999988754111  11111121  257889999988   


Q ss_pred             --------cccCCcCCCcceEEEEEcCCc
Q 019478          297 --------FVLNAVSILNLKCFRVVNNFL  317 (340)
Q Consensus       297 --------~~~~~~~f~~L~~L~l~~~~~  317 (340)
                              +...+..+++|+.|++..+.+
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCcC
Confidence                    123335678899998876533

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.99  E-value=2.2e-06  Score=80.73  Aligned_cols=99  Identities=16%  Similarity=0.176  Sum_probs=73.3

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY  248 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l  248 (340)
                      ..+++|++|+|.++.+++-. ...+..+++|+.|+|.+|.-..... -..+++|+.|.++++. ++.+.. .|+|+.|.+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L  106 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA  106 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred             ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence            46779999999998765421 1235789999999999986322222 3455899999999986 777654 499999999


Q ss_pred             eccce-eeecCCCcccceEEEeec
Q 019478          249 YGPEI-KLRMENVPQLLDISIGGG  271 (340)
Q Consensus       249 ~~~~~-~~~~~~~~~L~~l~l~~~  271 (340)
                      +++.. .+....+++|+.+++..+
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N  130 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANN  130 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSS
T ss_pred             cCCcCCCCCccccCCCCEEECCCC
Confidence            98854 344556789999988765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.98  E-value=2.2e-06  Score=76.30  Aligned_cols=140  Identities=12%  Similarity=0.110  Sum_probs=79.4

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcc-eEE--EeccCCCcceEEEEecCCceEEEEE-CCceeEE
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLL-SLK--VVGSSVKLKYLDICYCYFMEEVEIS-APSVRSF  246 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~-~l~--i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l  246 (340)
                      +++|++|++.++.+..- ....+..++.|+.|++.++.-.. ...  .-..+++|+.|.++++. ++.+... .++|+.|
T Consensus       120 ~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L  197 (330)
T 1xku_A          120 PKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTEL  197 (330)
T ss_dssp             CTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEE
T ss_pred             cccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEE
Confidence            36788888777655421 12335678888888888775311 000  01134677788777765 3332111 2677777


Q ss_pred             EEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcC
Q 019478          247 KYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNN  315 (340)
Q Consensus       247 ~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~  315 (340)
                      +++++...    ..+..+++|+.+.+....-   .......+.++++|+.|++.      +|..+..+++|++|++.++
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSI---SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCC---CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcC---ceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence            77766331    2355677777777765411   11112234566777777776      4455556667777777663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.97  E-value=5.4e-07  Score=79.83  Aligned_cols=161  Identities=15%  Similarity=0.032  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec---cCC-CcceEEEEecCCceEEE--
Q 019478          164 SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG---SSV-KLKYLDICYCYFMEEVE--  237 (340)
Q Consensus       164 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~---~~~-~L~~L~l~~c~~l~~l~--  237 (340)
                      .|..+.++++|++|+|.+..+... +...+..+++|++|++.++.- +. .++.   ..+ +|+.|.++++. +....  
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l-~~-~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~  192 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRI-SG-AIPDSYGSFSKLFTSMTISRNR-LTGKIPP  192 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCC-EE-ECCGGGGCCCTTCCEEECCSSE-EEEECCG
T ss_pred             CCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcc-cC-cCCHHHhhhhhcCcEEECcCCe-eeccCCh
Confidence            444566788888888887766421 112245678888888888752 21 1111   123 78888887765 33211  


Q ss_pred             -EECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCC
Q 019478          238 -ISAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSIL  305 (340)
Q Consensus       238 -i~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~  305 (340)
                       +...+|+.|+++++..    +..++.+++|+.+.+....-.   ... ..+..+++|+.|++.       +|..+..++
T Consensus       193 ~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  268 (313)
T 1ogq_A          193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA---FDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK  268 (313)
T ss_dssp             GGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC---CBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred             HHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee---eec-CcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence             1112388888877643    223567888888888655111   111 114578899999987       456677888


Q ss_pred             cceEEEEEcCCc-------hhhhHHHHHHHHhcc
Q 019478          306 NLKCFRVVNNFL-------CFCLILLLFLRKICN  332 (340)
Q Consensus       306 ~L~~L~l~~~~~-------~~c~~l~~~~l~~cp  332 (340)
                      +|++|++.++.+       ...+.|+.+.+...|
T Consensus       269 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            999999887433       234555555555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.96  E-value=2.9e-06  Score=79.24  Aligned_cols=139  Identities=17%  Similarity=0.188  Sum_probs=84.9

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCceeEE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVRSF  246 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l  246 (340)
                      +.++++|++|++.+..+..  +.  +..+++|++|++.++. ++.+.+ ..+++|+.|.+.++..++.+.+. .++|+.|
T Consensus       102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~-l~~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  175 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNT-LTEIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTL  175 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSC-CSCCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred             cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCc-cceecc-ccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence            4566777777776665543  11  4566777777777664 222222 23467777777777545554332 4777888


Q ss_pred             EEeccce-eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchh
Q 019478          247 KYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       247 ~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      +++++.. .+.++.+++|+.+.+....-..+      -+..+++|+.|++.      +|  +..+++|+.|++.++.+..
T Consensus       176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          176 DCSFNKITELDVSQNKLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             ECCSSCCCCCCCTTCTTCCEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred             ECCCCccceeccccCCCCCEEECcCCcCCee------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence            7776643 33466777788777765411111      14577888888887      33  5577788888888865554


Q ss_pred             h
Q 019478          320 C  320 (340)
Q Consensus       320 c  320 (340)
                      .
T Consensus       248 ~  248 (457)
T 3bz5_A          248 L  248 (457)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.95  E-value=9.8e-08  Score=82.85  Aligned_cols=141  Identities=13%  Similarity=0.179  Sum_probs=99.7

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE----ECCcee
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI----SAPSVR  244 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i----~~p~L~  244 (340)
                      ..+++|+.|.+.+..+.+-  .. +..+++|+.|++.++. +..+..-..+++|+.|.+.++. ++.+.-    ..++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence            5678999999988776531  11 5679999999999985 3332212245899999999886 555432    248999


Q ss_pred             EEEEecccee-e---ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEE
Q 019478          245 SFKYYGPEIK-L---RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVV  313 (340)
Q Consensus       245 ~l~l~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~  313 (340)
                      +|++.++... +   .++.+++|+.+.+..+.   +.......+..+++|+.|++.      + +..+..+++|++|++.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ---LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCc---cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            9999988542 1   25678999999987651   112223446789999999998      2 3345678999999999


Q ss_pred             cCCc
Q 019478          314 NNFL  317 (340)
Q Consensus       314 ~~~~  317 (340)
                      ++.+
T Consensus       190 ~N~l  193 (272)
T 3rfs_A          190 QNQL  193 (272)
T ss_dssp             SSCC
T ss_pred             CCcC
Confidence            8443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.94  E-value=2.1e-06  Score=73.67  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CCCCChHHHHHHHhcCChHHHHHHHHhhhhhhh
Q 019478           21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKY   53 (340)
Q Consensus        21 ~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~   53 (340)
                      ++.||+||+.+||+||+.+|+++++.|||+||.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999996

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.94  E-value=4.3e-07  Score=84.59  Aligned_cols=101  Identities=12%  Similarity=0.091  Sum_probs=64.3

Q ss_pred             CCcceEEEEecCCceEEEE----ECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcc
Q 019478          220 VKLKYLDICYCYFMEEVEI----SAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLE  291 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~l~i----~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~  291 (340)
                      ++|+.|.++++. ++.+..    ..++|+.|+++++..    ...++.+++|+.+++....   +.......+.++++|+
T Consensus       299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH---IRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC---CCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc---ccccChhhcccccccc
Confidence            567777776665 444322    237788888877643    2235667888888876541   1112234456788999


Q ss_pred             eEEEE------cc-cCCcCCCcceEEEEEcCCc-hhhhHHH
Q 019478          292 TLELG------FV-LNAVSILNLKCFRVVNNFL-CFCLILL  324 (340)
Q Consensus       292 ~L~l~------~~-~~~~~f~~L~~L~l~~~~~-~~c~~l~  324 (340)
                      .|++.      ++ ..+..+++|++|++.++.+ +.||.+.
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            99987      23 3456788999999998644 4577544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.94  E-value=2.5e-07  Score=89.56  Aligned_cols=36  Identities=19%  Similarity=0.125  Sum_probs=22.9

Q ss_pred             hhccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCch
Q 019478          283 IMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       283 ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      .+..+++|+.|++.       .+..+..+++|++|++.++.+.
T Consensus       471 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             GGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             hhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence            35566777777776       2455666777777777775443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.89  E-value=1.8e-05  Score=69.82  Aligned_cols=194  Identities=14%  Similarity=0.106  Sum_probs=117.9

Q ss_pred             ceeEEEEEEEeCCCCchhHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCC--CCCCCCceEE
Q 019478          101 CINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTL--SNIKSLRSLC  178 (340)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~--~~~~~L~~L~  178 (340)
                      .++.+.+.-  .......+..........++++|.+..+...+                   ..|..+  ..+++|++|+
T Consensus        65 ~l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------~~~~~~~~~~~~~L~~L~  123 (310)
T 4glp_A           65 RVRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKITG-------------------TMPPLPLEATGLALSSLR  123 (310)
T ss_dssp             CCCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS-------------------CCCCCSSSCCCBCCSSCE
T ss_pred             ceeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEecc-------------------chhhhhhhccCCCCCEEE
Confidence            366665521  11222334444555555789999997664332                   122333  6789999999


Q ss_pred             eeeEEecHHH--HH-HHHhcCccceEEeeeecCCcceEE--EeccCCCcceEEEEecCCceE--E--E---EECCceeEE
Q 019478          179 LDAVNVSGEV--LE-FFIYSCPLLARLRVVFSLDLLSLK--VVGSSVKLKYLDICYCYFMEE--V--E---ISAPSVRSF  246 (340)
Q Consensus       179 L~~~~i~~~~--l~-~lls~cp~Le~L~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~--l--~---i~~p~L~~l  246 (340)
                      |.++.++...  +. .-+..+++|++|++.++.- ..+.  .-...++|+.|+++++...+.  +  .   -..|+|++|
T Consensus       124 Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L  202 (310)
T 4glp_A          124 LRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL  202 (310)
T ss_dssp             EESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred             eecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence            9999876421  22 1134799999999999863 2211  111348899999999873221  1  0   135889999


Q ss_pred             EEeccceee-------ecCCCcccceEEEeeccCchhhhhhhhhhcc---CCCcceEEEE------cccCCcCCCcceEE
Q 019478          247 KYYGPEIKL-------RMENVPQLLDISIGGGYGVRMKHAISPIMSY---FHQLETLELG------FVLNAVSILNLKCF  310 (340)
Q Consensus       247 ~l~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~---~~~L~~L~l~------~~~~~~~f~~L~~L  310 (340)
                      .++++....       .++.+++|+++.+....-   ......-+..   +++|+.|++.      +|..+  +++|++|
T Consensus       203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l---~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L  277 (310)
T 4glp_A          203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL---RATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVL  277 (310)
T ss_dssp             BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC---CCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCE
T ss_pred             ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC---CccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEE
Confidence            988875421       135678899998876511   1111111223   3799999998      33333  3799999


Q ss_pred             EEEcCCchhhh
Q 019478          311 RVVNNFLCFCL  321 (340)
Q Consensus       311 ~l~~~~~~~c~  321 (340)
                      ++.++.+...|
T Consensus       278 ~Ls~N~l~~~~  288 (310)
T 4glp_A          278 DLSSNRLNRAP  288 (310)
T ss_dssp             ECCSCCCCSCC
T ss_pred             ECCCCcCCCCc
Confidence            99987666544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.88  E-value=1.7e-06  Score=76.59  Aligned_cols=170  Identities=19%  Similarity=0.129  Sum_probs=97.2

Q ss_pred             hCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCC--CCCCCCceEEeeeEEecHH--HHHHHHhc-CccceEE
Q 019478          128 AKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTL--SNIKSLRSLCLDAVNVSGE--VLEFFIYS-CPLLARL  202 (340)
Q Consensus       128 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~--~~~~~L~~L~L~~~~i~~~--~l~~lls~-cp~Le~L  202 (340)
                      -.++++|++..+...+                   ..|..+  ..+++|++|+|.+..+...  .+..+... .++|++|
T Consensus        94 l~~L~~L~L~~n~l~~-------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L  154 (312)
T 1wwl_A           94 ISGLQELTLENLEVTG-------------------TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL  154 (312)
T ss_dssp             TSCCCEEEEEEEBCBS-------------------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEE
T ss_pred             cCCccEEEccCCcccc-------------------hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEE
Confidence            4689999998764332                   122222  6788899999988876542  23332211 3888999


Q ss_pred             eeeecCCcceEE--EeccCCCcceEEEEecCCceEEE-------EECCceeEEEEecccee-------eecCCCcccceE
Q 019478          203 RVVFSLDLLSLK--VVGSSVKLKYLDICYCYFMEEVE-------ISAPSVRSFKYYGPEIK-------LRMENVPQLLDI  266 (340)
Q Consensus       203 ~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~l~-------i~~p~L~~l~l~~~~~~-------~~~~~~~~L~~l  266 (340)
                      ++.++.- ..+.  .-..+++|+.|.++++...+.+.       -..++|+.|+++++...       ..+..+++|+.+
T Consensus       155 ~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  233 (312)
T 1wwl_A          155 SIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL  233 (312)
T ss_dssp             EEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred             EeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence            9888752 2111  01134788888888776322111       13478888888776432       112355778877


Q ss_pred             EEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchhhh
Q 019478          267 SIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCFCL  321 (340)
Q Consensus       267 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c~  321 (340)
                      ++....-...  .....+..+++|+.|++.      +|..++  ++|++|++.++.+..-|
T Consensus       234 ~Ls~N~l~~~--~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p  290 (312)
T 1wwl_A          234 DLSHNSLRDA--AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP  290 (312)
T ss_dssp             ECTTSCCCSS--CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred             ECCCCcCCcc--cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh
Confidence            7765411100  001223456778888776      333232  57777777776555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.88  E-value=1.3e-06  Score=76.57  Aligned_cols=135  Identities=15%  Similarity=0.165  Sum_probs=64.1

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE--ECCceeEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI--SAPSVRSF  246 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i--~~p~L~~l  246 (340)
                      ..+++|+.|+|.++.+.+-  .. +..+++|+.|++.++. ++.+.--..+++|+.|.++++. ++++.-  ..++|+.|
T Consensus        65 ~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L  139 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL  139 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEE
T ss_pred             hcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc-CCCChhhcCCCCCCEE
Confidence            4456666666665554331  11 4556666666666553 2111111223556666665554 332210  13556666


Q ss_pred             EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEc
Q 019478          247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVN  314 (340)
Q Consensus       247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~  314 (340)
                      .++++...  -.++.+++|+.+.+..+.-..+.    . +..+++|+.|++.      ++ .+..+++|+.|++.+
T Consensus       140 ~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~----~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (291)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             EccCCcCCcchhhccCCCCCEEEccCCccccch----h-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcC
Confidence            65554321  12344566666666543111100    1 4456666666665      22 244556666666665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.88  E-value=1.1e-05  Score=73.51  Aligned_cols=92  Identities=14%  Similarity=0.121  Sum_probs=58.8

Q ss_pred             CCcceEEEEecCCceEEEEECCceeEEEEeccce-eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--
Q 019478          220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--  296 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--  296 (340)
                      ++|+.|.+.++. +..+. ..++|+.|++.++.. .+.....++|+.+.+....-..     ...+..+++|+.|++.  
T Consensus       186 ~~L~~L~l~~n~-l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~Ls~n  258 (390)
T 3o6n_A          186 PSLFHANVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSYN  258 (390)
T ss_dssp             TTCSEEECCSSC-CSEEE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSS
T ss_pred             cccceeeccccc-ccccC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-----cHHHcCCCCccEEECCCC
Confidence            445555554443 33332 235777777776643 2334446788888887652111     1456789999999998  


Q ss_pred             -----cccCCcCCCcceEEEEEcCCch
Q 019478          297 -----FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       297 -----~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                           .+..+..+++|++|++.++.+.
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          259 ELEKIMYHPFVKMQRLERLYISNNRLV  285 (390)
T ss_dssp             CCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred             cCCCcChhHccccccCCEEECCCCcCc
Confidence                 3566778999999999985443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.86  E-value=3.4e-06  Score=80.80  Aligned_cols=139  Identities=17%  Similarity=0.183  Sum_probs=87.7

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE-Ee---ccCCCcceEEEEecCCceEEE--E-ECC
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK-VV---GSSVKLKYLDICYCYFMEEVE--I-SAP  241 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~-i~---~~~~~L~~L~l~~c~~l~~l~--i-~~p  241 (340)
                      ..+++|+.|++.++.+.... .  ...+|+|++|++.++. ++... ++   ..+++|+.|.++++. +..+.  + ..+
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~  396 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE  396 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCT
T ss_pred             ccccccCEEeCcCCcccccc-c--cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccC
Confidence            35677777777665533211 0  0457778888887775 22221 11   244788888888876 44433  2 358


Q ss_pred             ceeEEEEecccee-----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcce
Q 019478          242 SVRSFKYYGPEIK-----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNLK  308 (340)
Q Consensus       242 ~L~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L~  308 (340)
                      +|+.|.+.++...     ..+..+++|+.+.+..+.   +.......+.++++|+.|++.        +|..+..+++|+
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC---CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc---ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            8888888876432     235677888888876541   112233456788999999986        445677888999


Q ss_pred             EEEEEcC
Q 019478          309 CFRVVNN  315 (340)
Q Consensus       309 ~L~l~~~  315 (340)
                      +|++.++
T Consensus       474 ~L~l~~n  480 (570)
T 2z63_A          474 FLDLSQC  480 (570)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            9998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.86  E-value=5.4e-06  Score=75.50  Aligned_cols=150  Identities=17%  Similarity=0.179  Sum_probs=79.6

Q ss_pred             CCCCCCCceEEeeeEEec------HHH---HHHHHhcCccceEEeeeecCCcc----eE-EEeccCCCcceEEEEecCCc
Q 019478          168 LSNIKSLRSLCLDAVNVS------GEV---LEFFIYSCPLLARLRVVFSLDLL----SL-KVVGSSVKLKYLDICYCYFM  233 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~------~~~---l~~lls~cp~Le~L~L~~c~~~~----~l-~i~~~~~~L~~L~l~~c~~l  233 (340)
                      +..+++|++|+|.++.+.      ..+   +...+..+++|++|+|.++.-..    .+ ..-..+++|++|.+++|. +
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence            345666666666654321      112   22334456666666666664211    00 000233677777777765 2


Q ss_pred             eEEE---EE-----C---------CceeEEEEecccee--------eecCCCcccceEEEeeccCc--hhhhhhhhhhcc
Q 019478          234 EEVE---IS-----A---------PSVRSFKYYGPEIK--------LRMENVPQLLDISIGGGYGV--RMKHAISPIMSY  286 (340)
Q Consensus       234 ~~l~---i~-----~---------p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~~~~--~~~~~~~~ll~~  286 (340)
                      +...   +.     .         |+|++|.++++...        -.+..+++|+.+.+..+.-.  .........+..
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence            2110   00     1         67777777766321        12335667777777655111  111122225667


Q ss_pred             CCCcceEEEE-----------cccCCcCCCcceEEEEEcCCch
Q 019478          287 FHQLETLELG-----------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       287 ~~~L~~L~l~-----------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      +++|+.|+|.           ++..+..+++|++|++.++.+.
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence            8888888887           2344567778888888776554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.86  E-value=4.4e-06  Score=80.74  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=52.6

Q ss_pred             CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE--
Q 019478          163 RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI--  238 (340)
Q Consensus       163 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i--  238 (340)
                      .+|..+.++++|++|++.++.+.+-. ...+..++.|++|++.++.....+..  -..+++|+.|.++++. +..+..  
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  369 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN  369 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred             CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence            45555667777777777776654321 12245567777777776642211110  1123566666666554 333321  


Q ss_pred             ----ECCceeEEEEecccee----eecCCCcccceEEEe
Q 019478          239 ----SAPSVRSFKYYGPEIK----LRMENVPQLLDISIG  269 (340)
Q Consensus       239 ----~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~  269 (340)
                          ..++|+.|++.++...    ..++.+++|+.+.+.
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence                1355666655554221    123345555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.85  E-value=1.4e-05  Score=70.23  Aligned_cols=140  Identities=15%  Similarity=0.129  Sum_probs=99.5

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE-e---ccCCCcceEEEEecCCceEEEE---ECCce
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV-V---GSSVKLKYLDICYCYFMEEVEI---SAPSV  243 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i-~---~~~~~L~~L~l~~c~~l~~l~i---~~p~L  243 (340)
                      .++|++|+|.+..+.+- -...+..+++|++|++.++. ++.... +   ...++|+.|.++++. +..+.-   ..++|
T Consensus        27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L  103 (306)
T 2z66_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL  103 (306)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred             CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence            47999999998876521 11235679999999999985 333221 1   135899999999986 555432   36999


Q ss_pred             eEEEEecccee-----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcceEE
Q 019478          244 RSFKYYGPEIK-----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNLKCF  310 (340)
Q Consensus       244 ~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L~~L  310 (340)
                      ++|.++++...     ..+..+++|+.+.+....   +.......+.++++|+.|++.        .+..+..+++|++|
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC---CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCc---CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            99999887432     236678899999886541   122233456789999999997        35667788999999


Q ss_pred             EEEcCC
Q 019478          311 RVVNNF  316 (340)
Q Consensus       311 ~l~~~~  316 (340)
                      ++.++.
T Consensus       181 ~Ls~n~  186 (306)
T 2z66_A          181 DLSQCQ  186 (306)
T ss_dssp             ECTTSC
T ss_pred             ECCCCC
Confidence            998843

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.85  E-value=5.1e-06  Score=77.72  Aligned_cols=73  Identities=14%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             CceeEEEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---c--ccCCcCCCcceEEEEE
Q 019478          241 PSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---F--VLNAVSILNLKCFRVV  313 (340)
Q Consensus       241 p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~--~~~~~~f~~L~~L~l~  313 (340)
                      ++|+.|+++++...  -.+..+++|+.+.+....-....    . +..+++|+.|++.   +  ...+..+++|++|++.
T Consensus       177 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT----P-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA  251 (466)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG----G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             CCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc----c-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence            55555555554321  11344555666655443111100    1 3456667777666   1  1234566677777777


Q ss_pred             cCCch
Q 019478          314 NNFLC  318 (340)
Q Consensus       314 ~~~~~  318 (340)
                      ++.+.
T Consensus       252 ~n~l~  256 (466)
T 1o6v_A          252 NNQIS  256 (466)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            65443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.85  E-value=4.9e-06  Score=77.70  Aligned_cols=167  Identities=15%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEE
Q 019478          129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARL  202 (340)
Q Consensus       129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L  202 (340)
                      ..+++|++..+.-.+     .+...++.- +|.++     .++  +..+++|++|++.+..+..-  .  +..++.|++|
T Consensus        85 ~~L~~L~Ls~N~l~~-----~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L  153 (457)
T 3bz5_A           85 TNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL  153 (457)
T ss_dssp             TTCSEEECCSSCCSC-----CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred             CCCCEEECcCCCCce-----eecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence            478888886553321     111112211 66666     333  57899999999998877542  2  6779999999


Q ss_pred             eeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCceeEEEEeccce-eeecCCCcccceEEEeeccCchhhhhh
Q 019478          203 RVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVRSFKYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAI  280 (340)
Q Consensus       203 ~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~  280 (340)
                      ++.+|..++.+.+ ..+++|+.|.++++. ++.+.+. .++|+.|.++++.. .+.++.+++|+.+.+....-..    +
T Consensus       154 ~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~----i  227 (457)
T 3bz5_A          154 DCHLNKKITKLDV-TPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE----I  227 (457)
T ss_dssp             ECTTCSCCCCCCC-TTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC----C
T ss_pred             ECCCCCccccccc-ccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc----c
Confidence            9999976655433 244899999999886 6665543 58999999988754 3457889999999987652111    1


Q ss_pred             hhhhccCCCcceEEEE---c-ccCCcCCCcceEEEEEc
Q 019478          281 SPIMSYFHQLETLELG---F-VLNAVSILNLKCFRVVN  314 (340)
Q Consensus       281 ~~ll~~~~~L~~L~l~---~-~~~~~~f~~L~~L~l~~  314 (340)
                      .  +..+++|+.|++.   + ...+..+++|+.|.+..
T Consensus       228 p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          228 D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ  263 (457)
T ss_dssp             C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred             C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence            1  5688999999998   1 12245777888776544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.84  E-value=1.3e-06  Score=77.32  Aligned_cols=149  Identities=16%  Similarity=0.078  Sum_probs=100.9

Q ss_pred             CCCCCceEEeeeEEecHHHHHHH-HhcCccceEEeeeecCCcceE-EEecc-----CCCcceEEEEecCCceEEE----E
Q 019478          170 NIKSLRSLCLDAVNVSGEVLEFF-IYSCPLLARLRVVFSLDLLSL-KVVGS-----SVKLKYLDICYCYFMEEVE----I  238 (340)
Q Consensus       170 ~~~~L~~L~L~~~~i~~~~l~~l-ls~cp~Le~L~L~~c~~~~~l-~i~~~-----~~~L~~L~l~~c~~l~~l~----i  238 (340)
                      ++++|++|+|.++.+.+..-..+ +..+++|++|++.++. ++.. ..-..     .++|++|.++++. +..+.    -
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence            58899999999998764322221 3678999999999985 2221 00011     2789999999987 44432    1


Q ss_pred             ECCceeEEEEeccce--------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc-----cCCc
Q 019478          239 SAPSVRSFKYYGPEI--------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV-----LNAV  302 (340)
Q Consensus       239 ~~p~L~~l~l~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~-----~~~~  302 (340)
                      ..++|+.|+++++..        .+.++.+++|+++++....-..+......++.++++|+.|++.   +.     ..+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            358999999998852        1223788999999997662222223444666788999999998   21     2334


Q ss_pred             CCCcceEEEEEcCCchhh
Q 019478          303 SILNLKCFRVVNNFLCFC  320 (340)
Q Consensus       303 ~f~~L~~L~l~~~~~~~c  320 (340)
                      .+++|++|++.++.+...
T Consensus       251 ~l~~L~~L~Ls~N~l~~i  268 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLKQV  268 (312)
T ss_dssp             CCTTCCEEECTTSCCSSC
T ss_pred             hcCCCCEEECCCCccChh
Confidence            568999999988655533

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.84  E-value=2.8e-06  Score=74.34  Aligned_cols=147  Identities=19%  Similarity=0.211  Sum_probs=91.7

Q ss_pred             CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEE----EC
Q 019478          166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEI----SA  240 (340)
Q Consensus       166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i----~~  240 (340)
                      ..+.++++|++|+|.+..++.-..   ...+++|++|++.++. +..+ ......++|+.|.++++. ++.+.-    ..
T Consensus        49 ~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l  123 (290)
T 1p9a_G           49 ATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGL  123 (290)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTC
T ss_pred             HHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCC
Confidence            345677888888887665543111   1467788888888774 2211 111234678888887775 444332    23


Q ss_pred             CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEE
Q 019478          241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCF  310 (340)
Q Consensus       241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L  310 (340)
                      ++|+.|.++++...    ..+..+++|+.+.+...   .+......++.++++|+.|++.      +|..+....+|++|
T Consensus       124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N---~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l  200 (290)
T 1p9a_G          124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN---NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (290)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS---CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             CCCCEEECCCCCCCccChhhcccccCCCEEECCCC---cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeE
Confidence            78888888877432    12456678888877544   1122233455678899999987      56666677789999


Q ss_pred             EEEcCCch-hh
Q 019478          311 RVVNNFLC-FC  320 (340)
Q Consensus       311 ~l~~~~~~-~c  320 (340)
                      .+.++... .|
T Consensus       201 ~L~~Np~~C~c  211 (290)
T 1p9a_G          201 FLHGNPWLCNC  211 (290)
T ss_dssp             ECCSCCBCCSG
T ss_pred             EeCCCCccCcC
Confidence            99886443 45

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.84  E-value=3.6e-06  Score=74.50  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=96.3

Q ss_pred             CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCce-EEEE---E
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFME-EVEI---S  239 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~-~l~i---~  239 (340)
                      |..+.++++|++|+|.+..+... +...+..+++|++|++.++.-...+ ..-..+++|++|.++++. +. .+.-   .
T Consensus        94 p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~  171 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGS  171 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGC
T ss_pred             ChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhh
Confidence            44557899999999998876421 1222567899999999988421110 001234899999999887 44 2211   1


Q ss_pred             C-CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcce
Q 019478          240 A-PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLK  308 (340)
Q Consensus       240 ~-p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~  308 (340)
                      . ++|+.|.++++...    -.++.+. |+.+.+...   .+.......+..+++|+.|++.      .+..+..+++|+
T Consensus       172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~  247 (313)
T 1ogq_A          172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN---MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN  247 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS---EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCC
T ss_pred             hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC---cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCC
Confidence            2 48999999877432    1234444 787777654   1122244556789999999998      223356778999


Q ss_pred             EEEEEcCCch
Q 019478          309 CFRVVNNFLC  318 (340)
Q Consensus       309 ~L~l~~~~~~  318 (340)
                      +|++.++.+.
T Consensus       248 ~L~Ls~N~l~  257 (313)
T 1ogq_A          248 GLDLRNNRIY  257 (313)
T ss_dssp             EEECCSSCCE
T ss_pred             EEECcCCccc
Confidence            9999986544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.84  E-value=3.7e-05  Score=73.25  Aligned_cols=147  Identities=12%  Similarity=0.098  Sum_probs=97.5

Q ss_pred             CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE---eccCCCcceEEEEecCCceEEEE---
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFMEEVEI---  238 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~l~i---  238 (340)
                      |..+.++++|++|+|.++.+.+-. ...+..+++|++|++.++. +..+.+   -..+++|+.|.+.++..++.+..   
T Consensus        67 ~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  144 (549)
T 2z81_A           67 GDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF  144 (549)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             hhhccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence            355788999999999988765422 2236789999999999985 222111   23457999999999875665532   


Q ss_pred             -ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc-------cCCcC
Q 019478          239 -SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV-------LNAVS  303 (340)
Q Consensus       239 -~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~-------~~~~~  303 (340)
                       ..++|+.|+++++...    -.++.+++|+++.+.......   ....++..+++|+.|++.   +.       .....
T Consensus       145 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  221 (549)
T 2z81_A          145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF---LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV  221 (549)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT---HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred             hcccccCeeeccCCcccccChhhhhccccCceEecccCcccc---cchhhHhhcccccEEEccCCccccccccccchhhh
Confidence             2488999999877432    235667888888887653222   122334568889999887   11       11234


Q ss_pred             CCcceEEEEEcCC
Q 019478          304 ILNLKCFRVVNNF  316 (340)
Q Consensus       304 f~~L~~L~l~~~~  316 (340)
                      +++|++|++.++.
T Consensus       222 ~~~L~~L~l~~n~  234 (549)
T 2z81_A          222 SSPMKKLAFRGSV  234 (549)
T ss_dssp             CCCCCEEEEESCE
T ss_pred             hhcccceeccccc
Confidence            5677777777643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.83  E-value=4e-06  Score=71.00  Aligned_cols=101  Identities=9%  Similarity=0.076  Sum_probs=51.2

Q ss_pred             CCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE--ECC
Q 019478          167 TLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI--SAP  241 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i--~~p  241 (340)
                      .+.++++|++|++.+.. ++.-. ...+..+++|++|++.+|..++.+...  ..+++|+.|.+.++. ++.+.-  ..+
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccccccccc
Confidence            34567777777777653 32100 001355777777777775555432211  133667777777664 332211  124


Q ss_pred             cee---EEEEecc-ce-ee---ecCCCcccc-eEEEe
Q 019478          242 SVR---SFKYYGP-EI-KL---RMENVPQLL-DISIG  269 (340)
Q Consensus       242 ~L~---~l~l~~~-~~-~~---~~~~~~~L~-~l~l~  269 (340)
                      +|+   .|+++++ .. .+   .+..+++|+ .+.+.
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence            444   6666665 22 11   134455566 55554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.82  E-value=1.6e-06  Score=77.98  Aligned_cols=173  Identities=13%  Similarity=0.061  Sum_probs=110.4

Q ss_pred             ceEeC-----C-CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE---eccCCCcceEEEE
Q 019478          158 CLKLF-----R-SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV---VGSSVKLKYLDIC  228 (340)
Q Consensus       158 ~L~L~-----~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i---~~~~~~L~~L~l~  228 (340)
                      .|.|.     . .+..+.++++|++|+|.+..++.- ....+..+++|++|++.++. ++.+..   -..+++|+.|.+.
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~  157 (353)
T 2z80_A           80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVG  157 (353)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEE
T ss_pred             EEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECC
Confidence            56665     2 234577889999999998876531 12336789999999999884 222211   2245899999999


Q ss_pred             ecCCceEEEE----ECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---c
Q 019478          229 YCYFMEEVEI----SAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---F  297 (340)
Q Consensus       229 ~c~~l~~l~i----~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~  297 (340)
                      ++..++.+..    ..++|+.|+++++..    +..++.+++|+++.+....-   ......++..+++|+.|++.   +
T Consensus       158 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS---TTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             CCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc---ccchhhhhhhcccccEEECCCCcc
Confidence            9865666532    248999999998743    22366788899998876522   22223445678999999998   1


Q ss_pred             cc-------CCcCCCcceEEEEEcCCchhhhHHH-HHHHHhccccc
Q 019478          298 VL-------NAVSILNLKCFRVVNNFLCFCLILL-LFLRKICNSHN  335 (340)
Q Consensus       298 ~~-------~~~~f~~L~~L~l~~~~~~~c~~l~-~~~l~~cp~~~  335 (340)
                      ..       .......++.+.+....+.....-. .-.+..+|+++
T Consensus       235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~  280 (353)
T 2z80_A          235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL  280 (353)
T ss_dssp             TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred             ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence            11       1224567888888886555432211 12355666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.82  E-value=2.5e-06  Score=83.17  Aligned_cols=160  Identities=12%  Similarity=0.135  Sum_probs=106.6

Q ss_pred             CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec-----------cCCCcceEEEEecCCceEEEE
Q 019478          170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG-----------SSVKLKYLDICYCYFMEEVEI  238 (340)
Q Consensus       170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~-----------~~~~L~~L~l~~c~~l~~l~i  238 (340)
                      .+++|++|+|.++.+.. --..+...+++|+.|++.++.- +.  ++.           .+++|+.|.++++. ++.+.-
T Consensus       431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l-~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~  505 (636)
T 4eco_A          431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNML-TE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSD  505 (636)
T ss_dssp             CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCC-SB--CCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCG
T ss_pred             cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCC-CC--cCHHHhccccccccccCCccEEECcCCc-CCccCh
Confidence            66799999999887762 1223456799999999999852 22  221           01289999999886 554432


Q ss_pred             -----ECCceeEEEEeccce---eeecCCCcccceEEEeecc---CchhhhhhhhhhccCCCcceEEEE------cccCC
Q 019478          239 -----SAPSVRSFKYYGPEI---KLRMENVPQLLDISIGGGY---GVRMKHAISPIMSYFHQLETLELG------FVLNA  301 (340)
Q Consensus       239 -----~~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~  301 (340)
                           ..++|+.|+++++..   +..+..+++|+.+++....   .+.+...+...+.++++|+.|++.      +|..+
T Consensus       506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~  585 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI  585 (636)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred             hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH
Confidence                 458999999998743   2345678999999985431   111122334456789999999998      44433


Q ss_pred             cCCCcceEEEEEcC------CchhhhHHHHH----------HHHhcccccc
Q 019478          302 VSILNLKCFRVVNN------FLCFCLILLLF----------LRKICNSHNV  336 (340)
Q Consensus       302 ~~f~~L~~L~l~~~------~~~~c~~l~~~----------~l~~cp~~~~  336 (340)
                        +++|+.|++.++      ....||.+...          .++.||.++.
T Consensus       586 --~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~~  634 (636)
T 4eco_A          586 --TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI  634 (636)
T ss_dssp             --CTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGCC
T ss_pred             --hCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCccccc
Confidence              379999999995      33456665432          2446776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.81  E-value=1.7e-06  Score=75.81  Aligned_cols=144  Identities=17%  Similarity=0.146  Sum_probs=97.1

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE---ECCceeEEE
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI---SAPSVRSFK  247 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i---~~p~L~~l~  247 (340)
                      .++|+.|+|.+..++.-. ...+..+++|+.|++.++. ++.+......++|+.|.++++. ++.+.-   ..++|+.|.
T Consensus        30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE
Confidence            378999999877654311 1225678999999999875 4444333556889999998876 444332   248899999


Q ss_pred             Eecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc-CCcCCCcceEEEEEcCC
Q 019478          248 YYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL-NAVSILNLKCFRVVNNF  316 (340)
Q Consensus       248 l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~-~~~~f~~L~~L~l~~~~  316 (340)
                      ++++...    -.+..+++|+.+.+...   .+.......+..+++|+.|++.      ++. .+..+++|++|.+.++.
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTS---CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCC---CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence            8877432    23567888888888654   1122233446688899999987      333 34678899999998865


Q ss_pred             chhh
Q 019478          317 LCFC  320 (340)
Q Consensus       317 ~~~c  320 (340)
                      +...
T Consensus       184 l~~i  187 (290)
T 1p9a_G          184 LYTI  187 (290)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            5543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.80  E-value=1.4e-05  Score=74.25  Aligned_cols=145  Identities=16%  Similarity=0.138  Sum_probs=96.8

Q ss_pred             CCCCCceEEeeeEEecHHHHHHHHh--cCccceEEeeeecCCcce----EE--------Ee-ccCCCcceEEEEecCCce
Q 019478          170 NIKSLRSLCLDAVNVSGEVLEFFIY--SCPLLARLRVVFSLDLLS----LK--------VV-GSSVKLKYLDICYCYFME  234 (340)
Q Consensus       170 ~~~~L~~L~L~~~~i~~~~l~~lls--~cp~Le~L~L~~c~~~~~----l~--------i~-~~~~~L~~L~l~~c~~l~  234 (340)
                      .+++|++|++.++.+.......+..  ..+.|+.|++.++.....    ..        +. ...++|+.|.++++. +.
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~  288 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IF  288 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CC
T ss_pred             ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-cc
Confidence            4477888888887776644333332  247888888887742211    00        00 012589999999886 44


Q ss_pred             EEEE----ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------ccc
Q 019478          235 EVEI----SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVL  299 (340)
Q Consensus       235 ~l~i----~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~  299 (340)
                      .+..    ..++|+.|+++++...    ..++.+++|+.+++....   +.......+.++++|+.|++.       .+.
T Consensus       289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF---LGSIDSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc---cCCcChhHhcCcccCCEEECCCCcccccChh
Confidence            4321    2489999999987542    246678999999997652   122233456789999999998       356


Q ss_pred             CCcCCCcceEEEEEcCCch
Q 019478          300 NAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       300 ~~~~f~~L~~L~l~~~~~~  318 (340)
                      .+..+++|++|++.++.+.
T Consensus       366 ~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          366 SFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCS
T ss_pred             hccccccccEEECCCCccc
Confidence            7788999999999985443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.80  E-value=2.9e-06  Score=84.52  Aligned_cols=72  Identities=15%  Similarity=0.321  Sum_probs=40.2

Q ss_pred             CCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc--cCCcCCCcceEE
Q 019478          240 APSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV--LNAVSILNLKCF  310 (340)
Q Consensus       240 ~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~--~~~~~f~~L~~L  310 (340)
                      .++|++|+++++..    +. ++.+++|+++++....   +...+...+..+++|+.|++.   +.  .....+++|++|
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L  274 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK---LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL  274 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC---CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc---CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence            36666666665532    12 5566677777665441   111233445677777877776   11  111266788888


Q ss_pred             EEEcC
Q 019478          311 RVVNN  315 (340)
Q Consensus       311 ~l~~~  315 (340)
                      ++.++
T Consensus       275 ~L~~n  279 (768)
T 3rgz_A          275 SLAEN  279 (768)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            77763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.80  E-value=1.7e-06  Score=83.66  Aligned_cols=136  Identities=15%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSF  246 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l  246 (340)
                      ..+++|+.|+|.++.+.+-.  . +..+++|+.|+|.+|. +..+..-..+++|+.|.++++. +..+.  -..|+|+.|
T Consensus        62 ~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L  136 (605)
T 1m9s_A           62 QYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL  136 (605)
T ss_dssp             GGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEE
T ss_pred             ccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC-CCCCccccCCCccCEE
Confidence            45666666666665543311  1 4556666666666663 2221111233566666666554 33221  013566666


Q ss_pred             EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---c--ccCCcCCCcceEEEEEc
Q 019478          247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---F--VLNAVSILNLKCFRVVN  314 (340)
Q Consensus       247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~--~~~~~~f~~L~~L~l~~  314 (340)
                      .++++...  -.+..+++|+.+.|..+.-..   .. . +..+++|+.|+|.   +  ...+..+++|+.|++.+
T Consensus       137 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~---~~-~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          137 YLGNNKITDITVLSRLTKLDTLSLEDNQISD---IV-P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  206 (605)
T ss_dssp             ECCSSCCCCCGGGGSCTTCSEEECCSSCCCC---CG-G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred             ECCCCccCCchhhcccCCCCEEECcCCcCCC---ch-h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccC
Confidence            66555321  124455666666654431111   00 1 4456666666665   1  12244555666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.79  E-value=8.9e-06  Score=72.34  Aligned_cols=76  Identities=14%  Similarity=0.183  Sum_probs=43.2

Q ss_pred             CceeEEEEeccce-eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEE
Q 019478          241 PSVRSFKYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRV  312 (340)
Q Consensus       241 p~L~~l~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l  312 (340)
                      ++|+.|.+.++.. .+.....++|+++.+...   .+.......+.++++|+.|++.       .+..+..+++|++|++
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGN---KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  247 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSCCTTCSEEECTTS---CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             CCcCEEECCCCccccCCccccccCCEEECCCC---cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence            5555555555432 111122355666555433   1111223446688899999987       2335677889999999


Q ss_pred             EcCCchh
Q 019478          313 VNNFLCF  319 (340)
Q Consensus       313 ~~~~~~~  319 (340)
                      .++.+..
T Consensus       248 ~~N~l~~  254 (330)
T 1xku_A          248 NNNKLVK  254 (330)
T ss_dssp             CSSCCSS
T ss_pred             CCCcCcc
Confidence            8865543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.77  E-value=1.3e-05  Score=78.10  Aligned_cols=166  Identities=15%  Similarity=0.139  Sum_probs=100.6

Q ss_pred             CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEeeeEE-ecHH----HHHHH--HhcCccceE
Q 019478          129 KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVN-VSGE----VLEFF--IYSCPLLAR  201 (340)
Q Consensus       129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L~~~~-i~~~----~l~~l--ls~cp~Le~  201 (340)
                      +++++|.+..+...+                   .+|..+.++++|++|+|.++. ++..    .+..+  +..+++|+.
T Consensus       249 ~~L~~L~L~~n~l~~-------------------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~  309 (636)
T 4eco_A          249 KDLTDVEVYNCPNLT-------------------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI  309 (636)
T ss_dssp             TTCCEEEEECCTTCS-------------------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred             CCCCEEEecCCcCCc-------------------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence            478888887664332                   445667889999999999887 7652    23332  134689999


Q ss_pred             EeeeecCCcceEEE---eccCCCcceEEEEecCCce-EEE--EECCceeEEEEeccceee---ecCCCcc-cceEEEeec
Q 019478          202 LRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFME-EVE--ISAPSVRSFKYYGPEIKL---RMENVPQ-LLDISIGGG  271 (340)
Q Consensus       202 L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~-~l~--i~~p~L~~l~l~~~~~~~---~~~~~~~-L~~l~l~~~  271 (340)
                      |++.++.- +.+.-   -..+++|+.|.+.++. +. .+.  -..++|+.|.++++....   .+..+++ |+.+.+...
T Consensus       310 L~L~~n~l-~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          310 IYIGYNNL-KTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             EECCSSCC-SSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS
T ss_pred             EECCCCcC-CccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC
Confidence            99998853 32211   1244789999998886 43 443  124788888887774321   2445666 887777654


Q ss_pred             cCchhhhhhhhhhcc--CCCcceEEEE-------cccCCc-------CCCcceEEEEEcCCchh
Q 019478          272 YGVRMKHAISPIMSY--FHQLETLELG-------FVLNAV-------SILNLKCFRVVNNFLCF  319 (340)
Q Consensus       272 ~~~~~~~~~~~ll~~--~~~L~~L~l~-------~~~~~~-------~f~~L~~L~l~~~~~~~  319 (340)
                      .-   . .+...+..  +++|+.|++.       .|..++       ...+|++|++.++.+..
T Consensus       388 ~l---~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~  447 (636)
T 4eco_A          388 KL---K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK  447 (636)
T ss_dssp             CC---S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS
T ss_pred             cC---c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc
Confidence            11   1 11122222  3367777776       233333       45577777777755543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.77  E-value=1.6e-06  Score=69.30  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceE-EE--E-ECCcee
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEE-VE--I-SAPSVR  244 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~-l~--i-~~p~L~  244 (340)
                      ...++|+.|++.++.+.+..+...+..+++|+.|++.+|. ++.+..-..+++|+.|.++++. +.. +.  . ..|+|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCC
Confidence            3457899999988887654455556778899999999886 4433111234778888888776 332 11  1 146666


Q ss_pred             EEEEecccee-----eecCCCcccceEEEeec
Q 019478          245 SFKYYGPEIK-----LRMENVPQLLDISIGGG  271 (340)
Q Consensus       245 ~l~l~~~~~~-----~~~~~~~~L~~l~l~~~  271 (340)
                      .|+++++...     -.+..+++|+.+++...
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            6666655321     12344555555555433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.76  E-value=1.6e-05  Score=76.80  Aligned_cols=92  Identities=14%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             CCcceEEEEecCCceEEEEECCceeEEEEeccce-eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--
Q 019478          220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--  296 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--  296 (340)
                      ++|+.|.+.++. +..+. ..++|+.|+++++.. .+.....++|+.+.+..+.-..     ...+..+++|+.|+|.  
T Consensus       192 ~~L~~L~l~~n~-l~~l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-----~~~l~~l~~L~~L~Ls~N  264 (597)
T 3oja_B          192 PSLFHANVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSYN  264 (597)
T ss_dssp             TTCSEEECCSSC-CSEEE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSS
T ss_pred             hhhhhhhcccCc-ccccc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-----ChhhccCCCCCEEECCCC
Confidence            455555555543 33332 245677777776643 2333345678888876552111     1456789999999998  


Q ss_pred             -----cccCCcCCCcceEEEEEcCCch
Q 019478          297 -----FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       297 -----~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                           .+..+..+++|+.|.+.++.+.
T Consensus       265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          265 ELEKIMYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             CCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred             ccCCCCHHHhcCccCCCEEECCCCCCC
Confidence                 4567788999999999885544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.76  E-value=2.7e-06  Score=82.24  Aligned_cols=154  Identities=11%  Similarity=0.085  Sum_probs=95.3

Q ss_pred             CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceE-EEE----
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEE-VEI----  238 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~-l~i----  238 (340)
                      |..+.++++|+.|++.++.+....-...+..+++|+.|++.+|.-.... ..-..+++|+.|.++++. +.+ +..    
T Consensus       392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  470 (606)
T 3vq2_A          392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFA  470 (606)
T ss_dssp             CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCT
T ss_pred             hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhc
Confidence            4455667777777777666543211123456777888888777521110 001134788888888775 332 211    


Q ss_pred             ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCC-cc
Q 019478          239 SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSIL-NL  307 (340)
Q Consensus       239 ~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~-~L  307 (340)
                      ..++|+.|+++++...    ..++.+++|+.+++..+.   +.......+.++++|+.|++.      +|..+..++ +|
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L  547 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN---LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL  547 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTC
T ss_pred             cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc---CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccC
Confidence            2488888888877432    235678888888886551   112223456688899999987      555566776 69


Q ss_pred             eEEEEEcCCch-hhhH
Q 019478          308 KCFRVVNNFLC-FCLI  322 (340)
Q Consensus       308 ~~L~l~~~~~~-~c~~  322 (340)
                      ++|++.++... .|+.
T Consensus       548 ~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          548 AFFNLTNNSVACICEH  563 (606)
T ss_dssp             CEEECCSCCCCCSSTT
T ss_pred             cEEEccCCCcccCCcc
Confidence            99999986544 4553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.75  E-value=5.2e-06  Score=82.72  Aligned_cols=135  Identities=14%  Similarity=0.193  Sum_probs=78.6

Q ss_pred             CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC------CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceE
Q 019478          129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF------RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLAR  201 (340)
Q Consensus       129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~------~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~  201 (340)
                      +++++|++..+...+    ..+...++.- +|.|.      .+|. +.++++|++|+|.++.+... +...+..+++|++
T Consensus       178 ~~L~~L~Ls~n~l~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~  251 (768)
T 3rgz_A          178 GELKHLAISGNKISG----DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTELKL  251 (768)
T ss_dssp             TTCCEEECCSSEEES----CCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCE
T ss_pred             CCCCEEECCCCcccc----cCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCE
Confidence            478888886543221    1111111111 66665      2333 68899999999998887643 3344678999999


Q ss_pred             EeeeecCCcceEEEeccCCCcceEEEEecCCce-EEEEE----CCceeEEEEeccce----eeecCCCcccceEEEeec
Q 019478          202 LRVVFSLDLLSLKVVGSSVKLKYLDICYCYFME-EVEIS----APSVRSFKYYGPEI----KLRMENVPQLLDISIGGG  271 (340)
Q Consensus       202 L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~-~l~i~----~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~  271 (340)
                      |++.+|.-...... ..+++|++|.+.++. +. .+.-.    +++|+.|+++++..    +-.++.+++|+.+.+..+
T Consensus       252 L~Ls~n~l~~~~~~-~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          252 LNISSNQFVGPIPP-LPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN  328 (768)
T ss_dssp             EECCSSCCEESCCC-CCCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCcccCccCc-cccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence            99999863221111 144778888887765 22 11111    26677777666532    123455666666666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.73  E-value=3.6e-06  Score=75.04  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=18.9

Q ss_pred             hccCCCcceEEEE------cccCCcCCCcceEEEEEcC
Q 019478          284 MSYFHQLETLELG------FVLNAVSILNLKCFRVVNN  315 (340)
Q Consensus       284 l~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~  315 (340)
                      +..+++|+.|++.      +|..+..+++|++|++.++
T Consensus       237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred             hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence            4456666666665      4444555666666666653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.70  E-value=1.3e-05  Score=74.98  Aligned_cols=142  Identities=13%  Similarity=0.159  Sum_probs=91.7

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRS  245 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~  245 (340)
                      +.++++|++|++.++.+.+-.  . +..+++|++|++.+|. +..+..-..+++|++|.++++. +..+.  -..++|+.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            567888888888877664321  1 6778888888888874 2221112344788888888875 33321  12478888


Q ss_pred             EEEecccee-eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc--cCCcCCCcceEEEEEcCCchh
Q 019478          246 FKYYGPEIK-LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV--LNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       246 l~l~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~--~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      |.+...... ..++.+++|+.+.+....-..+     ..+..+++|+.|.+.   +.  ..+..+++|++|++.++.+..
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  235 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD  235 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc
Confidence            888644321 2367788888888876521111     235688999999987   11  125578899999998865443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.70  E-value=1.4e-06  Score=75.53  Aligned_cols=154  Identities=12%  Similarity=0.074  Sum_probs=86.0

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcc--eEEEeccCCCcceEEEEecCCceEEEE-----E
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLL--SLKVVGSSVKLKYLDICYCYFMEEVEI-----S  239 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~--~l~i~~~~~~L~~L~l~~c~~l~~l~i-----~  239 (340)
                      .+.++++|++|+|.+..+..-. ...+..+++|++|++.++.-..  ...+ ..+++|+.|.++++. ++.+.+     .
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~l~~~~~~  147 (276)
T 2z62_A           71 AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNL-IQSFKLPEYFSN  147 (276)
T ss_dssp             TTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSC-CCCCCCCGGGGG
T ss_pred             HccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhc-ccCCCCCEEECcCCc-cceecCchhhcc
Confidence            4567788888888776543211 1124567888888887774211  1111 233778888888775 444322     1


Q ss_pred             CCceeEEEEecccee-e---ecCCCcccceEE--EeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCc
Q 019478          240 APSVRSFKYYGPEIK-L---RMENVPQLLDIS--IGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILN  306 (340)
Q Consensus       240 ~p~L~~l~l~~~~~~-~---~~~~~~~L~~l~--l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~  306 (340)
                      .++|+.|+++++... +   .+..+++|+.+.  ++.. ...+.......+ ...+|+.|++.      ++ ..+..+++
T Consensus       148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls-~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~  225 (276)
T 2z62_A          148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS-LNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTS  225 (276)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC-SSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred             CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC-CCcccccCcccc-CCCcccEEECCCCceeecCHhHhccccc
Confidence            378888888776432 1   233344555332  2221 111111111112 33479999987      33 34567889


Q ss_pred             ceEEEEEcCCch-hhhHHHH
Q 019478          307 LKCFRVVNNFLC-FCLILLL  325 (340)
Q Consensus       307 L~~L~l~~~~~~-~c~~l~~  325 (340)
                      |++|++.++... .|+.+.+
T Consensus       226 L~~L~l~~N~~~c~c~~l~~  245 (276)
T 2z62_A          226 LQKIWLHTNPWDCSCPRIDY  245 (276)
T ss_dssp             CCEEECCSSCBCCCTTTTHH
T ss_pred             ccEEEccCCcccccCCchHH
Confidence            999999986444 5765543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.69  E-value=3.6e-05  Score=74.51  Aligned_cols=93  Identities=10%  Similarity=0.040  Sum_probs=58.4

Q ss_pred             CCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---
Q 019478          220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---  296 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---  296 (340)
                      ++|+.|.+.++. ++.+.-..++|++|+++++........+++|+.+++..+       .+..+...+++|+.|++.   
T Consensus       201 ~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N-------~L~~lp~~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          201 SELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN-------RLTSLPMLPSGLLSLSVYRNQ  272 (622)
T ss_dssp             TTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-------CCSCCCCCCTTCCEEECCSSC
T ss_pred             chhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC-------CCCcCCcccccCcEEeCCCCC
Confidence            455555555553 333333346777777776644322355677777777543       122333467889999887   


Q ss_pred             ---cccCCcCCCcceEEEEEcCCchhh
Q 019478          297 ---FVLNAVSILNLKCFRVVNNFLCFC  320 (340)
Q Consensus       297 ---~~~~~~~f~~L~~L~l~~~~~~~c  320 (340)
                         +|..+..+++|+.|++.++.+...
T Consensus       273 L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          273 LTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             CCcCCHHHhhccccCEEEecCCCCCCc
Confidence               566677888999999998766543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.69  E-value=9.5e-06  Score=75.27  Aligned_cols=41  Identities=24%  Similarity=0.386  Sum_probs=36.6

Q ss_pred             ccCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 019478           16 ILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT   56 (340)
Q Consensus        16 ~~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~   56 (340)
                      -..|.++.||+|++.+||+||+.+|+++++.|||+|+++..
T Consensus        10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B           10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            34678899999999999999999999999999999987533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.69  E-value=3.1e-05  Score=77.91  Aligned_cols=35  Identities=11%  Similarity=0.075  Sum_probs=19.1

Q ss_pred             hccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCch
Q 019478          284 MSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       284 l~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      +.++++|+.|++.       .+..+..+++|++|++.++.+.
T Consensus       334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            3455555555555       1223455667777777765443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.66  E-value=4.1e-06  Score=72.38  Aligned_cols=141  Identities=16%  Similarity=0.101  Sum_probs=97.0

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE----ECCceeE
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI----SAPSVRS  245 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i----~~p~L~~  245 (340)
                      ++|+.|+|.+..+..-. ...+..+++|++|++.++. ++.+...  ..+++|+.|.+.++. ++.+..    ..++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCE
T ss_pred             CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCE
Confidence            67999999987765311 1125679999999999885 3322111  234899999999886 555432    2489999


Q ss_pred             EEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEEc
Q 019478          246 FKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVVN  314 (340)
Q Consensus       246 l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~  314 (340)
                      |.++++...    ..++.+++|+.+.+....   +.......+..+++|+.|++.      + +..+..+++|++|++.+
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE---LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN  190 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCc---CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence            999987432    225678999999987652   111223446789999999998      2 23466788999999988


Q ss_pred             CCch
Q 019478          315 NFLC  318 (340)
Q Consensus       315 ~~~~  318 (340)
                      +.+.
T Consensus       191 N~l~  194 (270)
T 2o6q_A          191 NQLK  194 (270)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            5433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.66  E-value=4.6e-06  Score=71.26  Aligned_cols=141  Identities=12%  Similarity=0.139  Sum_probs=79.1

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE----ECCceeE
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI----SAPSVRS  245 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i----~~p~L~~  245 (340)
                      ++|+.|+|.+..+..-. ...+..+++|++|++.++. +..+.-.  ...++|+.|.++++. ++.+..    ..++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence            45666666555443211 0113455666666666653 2211100  122566666666554 333221    2367777


Q ss_pred             EEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEEc
Q 019478          246 FKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVVN  314 (340)
Q Consensus       246 l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~  314 (340)
                      |+++++...    ..+..+++|+.+.+....   +.......+.++++|+.|+|.      + +..+..+++|++|++.+
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ---LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCc---CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            777766332    124667888888886551   111222346688999999998      2 33566788999999999


Q ss_pred             CCch
Q 019478          315 NFLC  318 (340)
Q Consensus       315 ~~~~  318 (340)
                      +...
T Consensus       189 N~~~  192 (251)
T 3m19_A          189 NQFD  192 (251)
T ss_dssp             CCBC
T ss_pred             Ccee
Confidence            7654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.65  E-value=2.6e-05  Score=75.51  Aligned_cols=164  Identities=14%  Similarity=0.081  Sum_probs=92.5

Q ss_pred             hCCCeEEEEEecCCCCCCCCCCceeeecCC--ceEeC-----CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccce
Q 019478          128 AKKVQKLELNLHPVGGGFWPPLELYAFPPE--CLKLF-----RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLA  200 (340)
Q Consensus       128 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~--~L~L~-----~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le  200 (340)
                      ..+++.+.+....-..     .+ ..++..  .|.|.     .+|   ..+++|++|+|.++.++.  +.   ...++|+
T Consensus        39 ~~~l~~L~ls~n~L~~-----lp-~~l~~~L~~L~L~~N~l~~lp---~~l~~L~~L~Ls~N~l~~--lp---~~l~~L~  104 (622)
T 3g06_A           39 NNGNAVLNVGESGLTT-----LP-DCLPAHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTS--LP---VLPPGLL  104 (622)
T ss_dssp             HHCCCEEECCSSCCSC-----CC-SCCCTTCSEEEECSCCCSCCC---CCCTTCCEEEECSCCCSC--CC---CCCTTCC
T ss_pred             CCCCcEEEecCCCcCc-----cC-hhhCCCCcEEEecCCCCCCCC---CcCCCCCEEEcCCCcCCc--CC---CCCCCCC
Confidence            3468888875443221     11 111111  56665     333   267788888888776642  11   1567888


Q ss_pred             EEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEeeccCchhhhhh
Q 019478          201 RLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAI  280 (340)
Q Consensus       201 ~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  280 (340)
                      .|++.++. ++.  ++...++|+.|.+.++. ++.+....++|++|+++++.........++|+.+.+..+       .+
T Consensus       105 ~L~Ls~N~-l~~--l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N-------~l  173 (622)
T 3g06_A          105 ELSIFSNP-LTH--LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNN-------QL  173 (622)
T ss_dssp             EEEECSCC-CCC--CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-------CC
T ss_pred             EEECcCCc-CCC--CCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCC-------CC
Confidence            88888774 222  12234778888888775 555554558888888887754332345567777766543       12


Q ss_pred             hhhhccCCCcceEEEE---cccCCcCCCcceEEEEEcCC
Q 019478          281 SPIMSYFHQLETLELG---FVLNAVSILNLKCFRVVNNF  316 (340)
Q Consensus       281 ~~ll~~~~~L~~L~l~---~~~~~~~f~~L~~L~l~~~~  316 (340)
                      ..+...+++|+.|++.   +......+++|+.|.+.++.
T Consensus       174 ~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~  212 (622)
T 3g06_A          174 TSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNR  212 (622)
T ss_dssp             SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCc
Confidence            2233456777777776   22222233455555555533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.63  E-value=4.6e-05  Score=76.69  Aligned_cols=42  Identities=7%  Similarity=-0.051  Sum_probs=21.8

Q ss_pred             CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC
Q 019478          166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL  208 (340)
Q Consensus       166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~  208 (340)
                      ..+.++++|+.|+|.++.+..-. ...+.++++|+.|++.++.
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCC
T ss_pred             HHhcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCC
Confidence            34556666666666655442210 0013446666666666653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.63  E-value=3.3e-06  Score=81.60  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=100.3

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE--ECCceeEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI--SAPSVRSF  246 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i--~~p~L~~l  246 (340)
                      ..+++|+.|++.++.+.+-  .. +..+++|+.|+|.+|. +..+.--..+++|+.|.++++. +..+.-  ..++|+.|
T Consensus        40 ~~L~~L~~L~l~~n~i~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L  114 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSL  114 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC--TT-GGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEE
T ss_pred             hcCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCC-CCCChhhccCCCCCEE
Confidence            4678999999988776431  12 6779999999999985 2221112355899999999986 444321  24899999


Q ss_pred             EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCch
Q 019478          247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      .++++...  -.+..+++|+.+.|..+.-..    + ..+..+++|+.|+|.      ++. +..+++|++|+|.++.+.
T Consensus       115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~----l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISDINGLVHLPQLESLYLGNNKITD----I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCCCGGGGGCTTCSEEECCSSCCCC----C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCCCccccCCCccCEEECCCCccCC----c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence            99887542  136678999999997652211    1 456789999999998      222 778899999999986555


Q ss_pred             hh
Q 019478          319 FC  320 (340)
Q Consensus       319 ~c  320 (340)
                      ..
T Consensus       189 ~l  190 (605)
T 1m9s_A          189 DL  190 (605)
T ss_dssp             BC
T ss_pred             CC
Confidence            43

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.60  E-value=3.6e-05  Score=65.02  Aligned_cols=141  Identities=15%  Similarity=0.102  Sum_probs=91.6

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----ECCceeE
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SAPSVRS  245 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~p~L~~  245 (340)
                      ++|++|+|.+..+..-. ...+.++++|++|++.++..++.+.-  -..+++|++|.+.+|..++.+..    ..++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            48999999987654311 11256799999999999964544321  12458999999999655776642    3589999


Q ss_pred             EEEeccceee--ecCCCcccc---eEEEeeccCchhhhhhhhhhccCCCcc-eEEEE------cccCCcCCCcceEEEEE
Q 019478          246 FKYYGPEIKL--RMENVPQLL---DISIGGGYGVRMKHAISPIMSYFHQLE-TLELG------FVLNAVSILNLKCFRVV  313 (340)
Q Consensus       246 l~l~~~~~~~--~~~~~~~L~---~l~l~~~~~~~~~~~~~~ll~~~~~L~-~L~l~------~~~~~~~f~~L~~L~l~  313 (340)
                      |.+.++....  .++.+++|+   .+.+....  .+.......+.++++|+ .|++.      ++.......+|++|++.
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCc--chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            9999874321  155677777   77775430  11222233456788888 88886      33332233677777777


Q ss_pred             cC
Q 019478          314 NN  315 (340)
Q Consensus       314 ~~  315 (340)
                      ++
T Consensus       188 ~n  189 (239)
T 2xwt_C          188 KN  189 (239)
T ss_dssp             TC
T ss_pred             CC
Confidence            65

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.56  E-value=5.6e-06  Score=72.49  Aligned_cols=142  Identities=15%  Similarity=0.187  Sum_probs=100.0

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSF  246 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l  246 (340)
                      ..+++|+.|++.++.+.+-  .. +..+++|++|++.++.- +.+.--..+++|+.|.++++. ++.+.  -..++|+.|
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n~l-~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L  117 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNKL-TDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSL  117 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEE
T ss_pred             hhcCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCCcc-CCCcccccCCCCCEEECCCCc-CCCChhhccCCCCCEE
Confidence            4678999999988776432  22 56799999999999852 221113345899999999886 44321  124899999


Q ss_pred             EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCch
Q 019478          247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      +++++...  -.+..+++|+.+.+..+.-..    + ..+..+++|+.|++.      ++. +..+++|++|.+.++.+.
T Consensus       118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~----~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDINGLVHLPQLESLYLGNNKITD----I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCC----C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCChhhcCCCCCCEEEccCCcCCc----c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence            99887532  135678899999887652111    1 346789999999998      222 778899999999997665


Q ss_pred             hhh
Q 019478          319 FCL  321 (340)
Q Consensus       319 ~c~  321 (340)
                      ..+
T Consensus       192 ~l~  194 (291)
T 1h6t_A          192 DLR  194 (291)
T ss_dssp             BCG
T ss_pred             CCh
Confidence            543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.54  E-value=5.5e-05  Score=70.48  Aligned_cols=31  Identities=13%  Similarity=0.193  Sum_probs=13.8

Q ss_pred             CCcceEEEEecCCceEEEEECCceeEEEEecc
Q 019478          220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGP  251 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~  251 (340)
                      ++|+.|.++++. ++.+.-..++|+.|+++++
T Consensus       277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N  307 (454)
T 1jl5_A          277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSN  307 (454)
T ss_dssp             TTCCEEECCSSC-CSEESCCCTTCCEEECCSS
T ss_pred             CcCCEEECcCCc-cCcccCcCCcCCEEECcCC
Confidence            455555555543 3332212245555555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.54  E-value=6.7e-06  Score=68.03  Aligned_cols=138  Identities=15%  Similarity=0.135  Sum_probs=74.7

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEISAPSVRSFKY  248 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l  248 (340)
                      .++|++|++.+..+..- ....+..+++|++|++.++. ++.+.-.  ..+++|+.|.++++. ++.+.           
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-----------   92 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLP-----------   92 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc-CCccC-----------
Confidence            46788888887766421 12234668888888888874 2221110  123566666666554 22211           


Q ss_pred             eccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcC-Cchhh
Q 019478          249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNN-FLCFC  320 (340)
Q Consensus       249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~-~~~~c  320 (340)
                           ...++.+++|+.+.+....   +.......+..+++|+.|++.      ++ ..+..+++|++|++.++ ..+.|
T Consensus        93 -----~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           93 -----NGVFDKLTQLKELALNTNQ---LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             -----TTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             -----HhHhcCccCCCEEEcCCCc---CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence                 1113455566666554331   111122234566777777776      22 23556778888888774 34456


Q ss_pred             hHHHHHHHHh
Q 019478          321 LILLLFLRKI  330 (340)
Q Consensus       321 ~~l~~~~l~~  330 (340)
                      +.++.+.+..
T Consensus       165 ~~l~~L~~~~  174 (208)
T 2o6s_A          165 PGIRYLSEWI  174 (208)
T ss_dssp             TTTHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            7776665443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.51  E-value=3e-06  Score=78.90  Aligned_cols=166  Identities=12%  Similarity=0.081  Sum_probs=103.9

Q ss_pred             CCCCCCCceEEeeeEEecHHH---HHHHHhcCccceEEeeeecCCcceE---EEeccCC----CcceEEEEecCCceEEE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEV---LEFFIYSCPLLARLRVVFSLDLLSL---KVVGSSV----KLKYLDICYCYFMEEVE  237 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~---l~~lls~cp~Le~L~L~~c~~~~~l---~i~~~~~----~L~~L~l~~c~~l~~l~  237 (340)
                      +..+++|++|+|.++.+++.+   +...+..+++|++|++.++. ++..   .+....+    +|++|.+++|. +++..
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~  101 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAG  101 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGG
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHH
Confidence            356789999999998888763   55667778999999999875 3221   1111122    69999999886 43210


Q ss_pred             --------EECCceeEEEEecccee---------eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE---
Q 019478          238 --------ISAPSVRSFKYYGPEIK---------LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG---  296 (340)
Q Consensus       238 --------i~~p~L~~l~l~~~~~~---------~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~---  296 (340)
                              -..++|++|+++++...         ......++|+++++..+. .......+...+..+++|+.|++.   
T Consensus       102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence                    13589999999877431         112235679988887662 111122455667788999999998   


Q ss_pred             c----ccCCc-----CCCcceEEEEEcCCchhhhH-HHHHHHHhccccc
Q 019478          297 F----VLNAV-----SILNLKCFRVVNNFLCFCLI-LLLFLRKICNSHN  335 (340)
Q Consensus       297 ~----~~~~~-----~f~~L~~L~l~~~~~~~c~~-l~~~~l~~cp~~~  335 (340)
                      +    ...+.     ..++|++|++.++.+..-.. -..-.+..|++++
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            1    11111     35599999998865553211 1222455677654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.51  E-value=4.3e-05  Score=62.57  Aligned_cols=65  Identities=18%  Similarity=0.225  Sum_probs=38.1

Q ss_pred             CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecC
Q 019478          166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCY  231 (340)
Q Consensus       166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~  231 (340)
                      ..+..+++|++|++.++.+++..... +..+++|++|++.+|..++.+..-..+++|+.|.+++|.
T Consensus       106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             CCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred             hhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence            34456777777777777666543332 456777777777777534333211233566666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.49  E-value=3.4e-05  Score=77.48  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=69.5

Q ss_pred             CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEeeeEE-ecH----HHHHHHH---hcCccce
Q 019478          129 KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVN-VSG----EVLEFFI---YSCPLLA  200 (340)
Q Consensus       129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L~~~~-i~~----~~l~~ll---s~cp~Le  200 (340)
                      ++++.|.+..+...+                   .+|..+.++++|+.|+|.++. ++.    ..+..+-   ..+|+|+
T Consensus       491 ~~L~~L~Ls~N~l~~-------------------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~  551 (876)
T 4ecn_A          491 KDLTDVELYNCPNMT-------------------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ  551 (876)
T ss_dssp             TTCCEEEEESCTTCC-------------------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred             CCCCEEECcCCCCCc-------------------cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence            478888887664332                   334445677888888888776 554    2233322   3456888


Q ss_pred             EEeeeecCCcceEEE---eccCCCcceEEEEecCCceEEE-E-ECCceeEEEEecccee---eecCCCcc-cceEEEeec
Q 019478          201 RLRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFMEEVE-I-SAPSVRSFKYYGPEIK---LRMENVPQ-LLDISIGGG  271 (340)
Q Consensus       201 ~L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~l~l~~~~~~---~~~~~~~~-L~~l~l~~~  271 (340)
                      .|++.++.- ..+.-   -..+++|+.|.++++. +..+. + ..++|+.|.++++...   -.+..+++ |+.+.+..+
T Consensus       552 ~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          552 IFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             EEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred             EEEeeCCcC-CccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence            888887752 22111   1134677777777765 33332 1 1367777777766332   12344555 666666544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.49  E-value=1.1e-05  Score=62.82  Aligned_cols=37  Identities=19%  Similarity=0.108  Sum_probs=18.4

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeec
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFS  207 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c  207 (340)
                      .++|+.|++.++.+.+..+...+..+++|+.|++.+|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n   52 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV   52 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC
Confidence            3555555555555543233333344555555555555

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.47  E-value=6.2e-05  Score=69.47  Aligned_cols=38  Identities=26%  Similarity=0.485  Sum_probs=35.5

Q ss_pred             cCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 019478           17 LVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYL   54 (340)
Q Consensus        17 ~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~l   54 (340)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            46889999999999999999999999999999999863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.47  E-value=8.9e-05  Score=59.47  Aligned_cols=127  Identities=12%  Similarity=0.026  Sum_probs=61.6

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY  248 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l  248 (340)
                      .++++|+.|++.++.+..  +..+...+|+|+.|++.++. ++.+..-..+++|+.|.++++. ++.+.           
T Consensus        16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~-----------   80 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIG-----------   80 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEEC-----------
T ss_pred             CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccC-----------
Confidence            345666666666555442  22222334466666666653 2222111122344444444432 22110           


Q ss_pred             eccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc----CCcCCCcceEEEEEcCCc
Q 019478          249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL----NAVSILNLKCFRVVNNFL  317 (340)
Q Consensus       249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~----~~~~f~~L~~L~l~~~~~  317 (340)
                           ...++.+++|+.+++....-..+..  ...+..+++|+.|.+.      .+.    .+..+++|+.|++..+..
T Consensus        81 -----~~~~~~l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           81 -----EGLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             -----SCHHHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             -----cchhhcCCCCCEEECCCCcCCcchh--hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence                 0113456777777776541111111  1245578888888887      233    255677788887776443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.45  E-value=6.2e-06  Score=74.49  Aligned_cols=142  Identities=13%  Similarity=0.090  Sum_probs=79.0

Q ss_pred             CCCceEEeeeEEecH---HHHHHHHhcC-ccceEEeeeecCCcceEEEec------c-CCCcceEEEEecCCceEEEE--
Q 019478          172 KSLRSLCLDAVNVSG---EVLEFFIYSC-PLLARLRVVFSLDLLSLKVVG------S-SVKLKYLDICYCYFMEEVEI--  238 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~---~~l~~lls~c-p~Le~L~L~~c~~~~~l~i~~------~-~~~L~~L~l~~c~~l~~l~i--  238 (340)
                      ++|++|+|.++.+++   ..+...+..+ +.|++|++.+|. ++......      . ..+|++|.+++|. +++...  
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~  157 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE  157 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence            777777777776654   2344445555 677777777775 22211110      0 2577788777765 332111  


Q ss_pred             ------EC-CceeEEEEeccceee--------ecCCC-cccceEEEeecc--Cchhhhhhhhhhcc-CCCcceEEEE---
Q 019478          239 ------SA-PSVRSFKYYGPEIKL--------RMENV-PQLLDISIGGGY--GVRMKHAISPIMSY-FHQLETLELG---  296 (340)
Q Consensus       239 ------~~-p~L~~l~l~~~~~~~--------~~~~~-~~L~~l~l~~~~--~~~~~~~~~~ll~~-~~~L~~L~l~---  296 (340)
                            .. ++|++|+++++...-        .+... ++|+.+++..+.  .... ..+...+.. .++|+.|++.   
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-AELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHHSCTTCCEEECCSSC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-HHHHHHHhcCCCCceEEECcCCC
Confidence                  12 378888887763210        12233 478888776551  1111 123333333 4588888887   


Q ss_pred             --------cccCCcCCCcceEEEEEcCC
Q 019478          297 --------FVLNAVSILNLKCFRVVNNF  316 (340)
Q Consensus       297 --------~~~~~~~f~~L~~L~l~~~~  316 (340)
                              +...+..+++|++|++.++.
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence                    12334667788888888743

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.43  E-value=3.4e-05  Score=71.10  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=34.5

Q ss_pred             cCCcCCCCChH----HHHHHHhcCChHHHHHHHHhhhhhhh
Q 019478           17 LVDWISRLPDE----ILVNIISRLAVREAARTSVLSSRWKY   53 (340)
Q Consensus        17 ~~d~~s~LPd~----il~~Ils~L~~~d~~r~~~vsk~W~~   53 (340)
                      ..|.++.||+|    |+.+||+||+.++++++++|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            46778899999    99999999999999999999999984

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.42  E-value=4.8e-06  Score=77.51  Aligned_cols=161  Identities=16%  Similarity=0.144  Sum_probs=87.6

Q ss_pred             CCceEEeeeEEecHHH---HHHHHhcCccceEEeeeecCCcceEE---E----eccCCCcceEEEEecCCceEEE-----
Q 019478          173 SLRSLCLDAVNVSGEV---LEFFIYSCPLLARLRVVFSLDLLSLK---V----VGSSVKLKYLDICYCYFMEEVE-----  237 (340)
Q Consensus       173 ~L~~L~L~~~~i~~~~---l~~lls~cp~Le~L~L~~c~~~~~l~---i----~~~~~~L~~L~l~~c~~l~~l~-----  237 (340)
                      +|++|+|.++.+++.+   +...+..+++|++|++.++. ++...   +    .....+|++|.+++|. ++...     
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHH
Confidence            5777777666666532   34445566677777776664 22100   0    1112357777777664 32211     


Q ss_pred             ---EECCceeEEEEeccceee----ec-----CCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE---c----
Q 019478          238 ---ISAPSVRSFKYYGPEIKL----RM-----ENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG---F----  297 (340)
Q Consensus       238 ---i~~p~L~~l~l~~~~~~~----~~-----~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~---~----  297 (340)
                         -..++|+.|+++++...-    .+     ...++|+++++..+. .......+...+..+++|++|++.   +    
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence               013788888887764210    01     124578888776551 111112345566788999999987   1    


Q ss_pred             -----ccCCcCCCcceEEEEEcCCchhhh-HHHHHHHHhccccc
Q 019478          298 -----VLNAVSILNLKCFRVVNNFLCFCL-ILLLFLRKICNSHN  335 (340)
Q Consensus       298 -----~~~~~~f~~L~~L~l~~~~~~~c~-~l~~~~l~~cp~~~  335 (340)
                           +.....+++|++|++.++.+..-. ....-.+..||+++
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  287 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK  287 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence                 122235789999999886554321 11222356677654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=7.5e-06  Score=82.22  Aligned_cols=93  Identities=13%  Similarity=0.135  Sum_probs=44.1

Q ss_pred             CcceEEEEecCCceEEEE-----ECCceeEEEEecccee-e-ecCCCcccceEEEeeccCchhhhhhhhhhccCCC-cce
Q 019478          221 KLKYLDICYCYFMEEVEI-----SAPSVRSFKYYGPEIK-L-RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQ-LET  292 (340)
Q Consensus       221 ~L~~L~l~~c~~l~~l~i-----~~p~L~~l~l~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~-L~~  292 (340)
                      +|+.|.++++. +..+.-     ..++|+.|.++++... + .++.+++|+.+.+....   +. .+...+.++++ |+.
T Consensus       549 ~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~---l~-~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          549 KIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ---IE-EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC---CS-CCCTTSCEECTTCCE
T ss_pred             CccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc---cc-cchHHHhhccccCCE
Confidence            45555555544 333322     1355666665554221 1 34455556655554331   11 12223445666 777


Q ss_pred             EEEE------cccCCcCCC--cceEEEEEcCCch
Q 019478          293 LELG------FVLNAVSIL--NLKCFRVVNNFLC  318 (340)
Q Consensus       293 L~l~------~~~~~~~f~--~L~~L~l~~~~~~  318 (340)
                      |++.      +|..+....  +|++|++.++.+.
T Consensus       624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             EECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence            7776      333333332  3777777665443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.42  E-value=0.00018  Score=67.93  Aligned_cols=174  Identities=11%  Similarity=0.086  Sum_probs=91.8

Q ss_pred             HHHHHHHh-CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC------CCCCCCCCCCCCceEEeeeEEecH-HHHHH
Q 019478          121 HWIFTALA-KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF------RSPRTLSNIKSLRSLCLDAVNVSG-EVLEF  191 (340)
Q Consensus       121 ~w~~~~~~-~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~------~~~~~~~~~~~L~~L~L~~~~i~~-~~l~~  191 (340)
                      .++..... ..++.|.+..+.....    .....++.- .|.++      ..|..+..+++|++|+|.++.+.+ ..+..
T Consensus       293 ~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  368 (520)
T 2z7x_B          293 SYIYEIFSNMNIKNFTVSGTRMVHM----LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE  368 (520)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCC----CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred             hhhhcccccCceeEEEcCCCccccc----cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence            34444433 5799999986643220    000111111 55554      234455677777777777766653 23444


Q ss_pred             HHhcCccceEEeeeecCCcceEE--EeccCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCC-cccceEEE
Q 019478          192 FIYSCPLLARLRVVFSLDLLSLK--VVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENV-PQLLDISI  268 (340)
Q Consensus       192 lls~cp~Le~L~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~-~~L~~l~l  268 (340)
                      .+..+++|++|++.++.-...+.  .-...++|+.|.++++. +.                   ....... ++|+.+.+
T Consensus       369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~-------------------~~~~~~l~~~L~~L~L  428 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LT-------------------DTIFRCLPPRIKVLDL  428 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CC-------------------GGGGGSCCTTCCEEEC
T ss_pred             HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CC-------------------cchhhhhcccCCEEEC
Confidence            56667777777777764211010  00122455555555554 11                   0011111 46666666


Q ss_pred             eeccCchhhhhhhhhhccCCCcceEEEE------cccC-CcCCCcceEEEEEcCCch-hhhH
Q 019478          269 GGGYGVRMKHAISPIMSYFHQLETLELG------FVLN-AVSILNLKCFRVVNNFLC-FCLI  322 (340)
Q Consensus       269 ~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~-~~~f~~L~~L~l~~~~~~-~c~~  322 (340)
                      ....-   . .+..-+.++++|+.|++.      +|.. +..+++|++|++.++... .|+.
T Consensus       429 s~N~l---~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          429 HSNKI---K-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CSSCC---C-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCCcc---c-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            54311   1 112222378888888887      4443 677889999999997554 4653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.42  E-value=4e-05  Score=65.94  Aligned_cols=36  Identities=19%  Similarity=0.127  Sum_probs=18.0

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeec
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFS  207 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c  207 (340)
                      ..+++|+.|+|.++.+.+-.  . +..+++|+.|++.++
T Consensus        60 ~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSS
T ss_pred             hhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCC
Confidence            45555555555555443211  1 445555555555555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.41  E-value=0.00021  Score=67.58  Aligned_cols=148  Identities=10%  Similarity=0.048  Sum_probs=91.6

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhc--CccceEEeeeecCCcceE--EE----eccCC-------------------
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYS--CPLLARLRVVFSLDLLSL--KV----VGSSV-------------------  220 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~--cp~Le~L~L~~c~~~~~l--~i----~~~~~-------------------  220 (340)
                      +..+++|+.|++.++.+.+..+..+...  ++.|++|++.+|.-.+.+  .+    ...++                   
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~  295 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI  295 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred             hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence            4567889999998888888766655543  678999999988411000  00    01112                   


Q ss_pred             -------CcceEEEEecCCceEEE--EECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccC
Q 019478          221 -------KLKYLDICYCYFMEEVE--ISAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYF  287 (340)
Q Consensus       221 -------~L~~L~l~~c~~l~~l~--i~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~  287 (340)
                             +|+.|.++++. +..+.  -..++|++|+++++..    +..++.+++|+.+.+....-..+ ..+...+.++
T Consensus       296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~l  373 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-SKIAEMTTQM  373 (520)
T ss_dssp             HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-HHHHHHHTTC
T ss_pred             hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-ccchHHHhhC
Confidence                   35555555554 22222  2357888888887743    22356778888888865521111 1233456788


Q ss_pred             CCcceEEEE-------ccc-CCcCCCcceEEEEEcCCc
Q 019478          288 HQLETLELG-------FVL-NAVSILNLKCFRVVNNFL  317 (340)
Q Consensus       288 ~~L~~L~l~-------~~~-~~~~f~~L~~L~l~~~~~  317 (340)
                      ++|+.|++.       ++. .+..+++|++|++.++.+
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence            999999987       222 255678899999988655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.39  E-value=0.00015  Score=69.37  Aligned_cols=142  Identities=13%  Similarity=-0.026  Sum_probs=80.8

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY  248 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l  248 (340)
                      ..+++|++|+|.++.++.  +.. +  +.+|+.|++.++. ++.  ++..+++|+.|.++++. ++.+.-..++|+.|.+
T Consensus        97 ~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~Ls~N~-l~~--lp~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~L  167 (571)
T 3cvr_A           97 ELPASLEYLDACDNRLST--LPE-L--PASLKHLDVDNNQ-LTM--LPELPALLEYINADNNQ-LTMLPELPTSLEVLSV  167 (571)
T ss_dssp             CCCTTCCEEECCSSCCSC--CCC-C--CTTCCEEECCSSC-CSC--CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred             cccCCCCEEEccCCCCCC--cch-h--hcCCCEEECCCCc-CCC--CCCcCccccEEeCCCCc-cCcCCCcCCCcCEEEC
Confidence            456788888887766543  222 2  2278888888774 222  22244778888887775 4444444578888888


Q ss_pred             eccceeeecCCCcccceEEEeeccCchhhhhhh-hhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchhh
Q 019478          249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAIS-PIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCFC  320 (340)
Q Consensus       249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c  320 (340)
                      +++.......-.++|+.+++..+.-..+.. +. .+....+.|+.|+|.      +|..+..+++|+.|++.+|.+...
T Consensus       168 s~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          168 RNNQLTFLPELPESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             CCCCCCCcchhhCCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            777431111112677777776541111111 10 111112223888887      566666788999999998766543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.38  E-value=1.8e-05  Score=63.56  Aligned_cols=58  Identities=10%  Similarity=-0.033  Sum_probs=40.6

Q ss_pred             CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE--EeccCCCcceEEEEecC
Q 019478          170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK--VVGSSVKLKYLDICYCY  231 (340)
Q Consensus       170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~  231 (340)
                      ..++|+.|+|.++.+.+  + .-+..+++|+.|++.++. ++.+.  +-..+++|+.|.++++.
T Consensus        40 ~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~   99 (176)
T 1a9n_A           40 TLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS   99 (176)
T ss_dssp             GTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC
T ss_pred             cCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc
Confidence            34599999999887654  2 235679999999999985 44321  11234788888887775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.38  E-value=1.3e-05  Score=78.60  Aligned_cols=151  Identities=11%  Similarity=0.125  Sum_probs=73.0

Q ss_pred             CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCc-------------ceEEE-----------e---c
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDL-------------LSLKV-----------V---G  217 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~-------------~~l~i-----------~---~  217 (340)
                      |..+.++++|+.|+|.+..+...--...+.++++|++|++.+|.-.             ..+.+           +   .
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            3445677778888877655432110112456777777777766410             00000           0   0


Q ss_pred             cCCCcceEEEEecCCceEEEE----ECCceeEEEEeccceee------------ecCCCcccceEEEeeccCchhhhhhh
Q 019478          218 SSVKLKYLDICYCYFMEEVEI----SAPSVRSFKYYGPEIKL------------RMENVPQLLDISIGGGYGVRMKHAIS  281 (340)
Q Consensus       218 ~~~~L~~L~l~~c~~l~~l~i----~~p~L~~l~l~~~~~~~------------~~~~~~~L~~l~l~~~~~~~~~~~~~  281 (340)
                      .+++|+.|.++++. ++.+.-    ..++|+.|+++++....            .++++++|+.+++....   +.....
T Consensus       478 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~---l~~i~~  553 (680)
T 1ziw_A          478 PLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG---FDEIPV  553 (680)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC---CCCCCT
T ss_pred             cCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC---CCCCCH
Confidence            12345555554443 222211    12556666665543211            13455666666654431   111112


Q ss_pred             hhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcCCchh
Q 019478          282 PIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       282 ~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      ..+.++++|+.|++.      ++ ..+..+++|+.|++.++.+..
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            335567777777776      22 223456677777777654443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.37  E-value=0.00027  Score=67.54  Aligned_cols=148  Identities=14%  Similarity=0.076  Sum_probs=88.6

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEe---ccCCCcceEEEEecCCceE-EE----EE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVV---GSSVKLKYLDICYCYFMEE-VE----IS  239 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~---~~~~~L~~L~l~~c~~l~~-l~----i~  239 (340)
                      ..+++|++|++.+..+.+.. ...+..+++|+.|++.++. ++.+ .++   ...++|+.|.++++. ++. +.    ..
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~  426 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAW  426 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTT-TTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred             cCCCCceEEECCCCccccch-hhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence            56677777777776665421 1223567777777777764 2211 111   233677777777665 322 22    12


Q ss_pred             CCceeEEEEeccce-eeecCCC-cccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccC-CcCCCcceEE
Q 019478          240 APSVRSFKYYGPEI-KLRMENV-PQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLN-AVSILNLKCF  310 (340)
Q Consensus       240 ~p~L~~l~l~~~~~-~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~-~~~f~~L~~L  310 (340)
                      .++|+.|.++++.. ...+... ++|+.+++....   +.. +..-+.++++|+.|++.      +|.. +..+++|+.|
T Consensus       427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~---l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR---IMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC---CCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred             cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc---Ccc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence            47788888777643 2223333 588888886551   111 11222388899999998      4544 6788899999


Q ss_pred             EEEcCCch-hhhHH
Q 019478          311 RVVNNFLC-FCLIL  323 (340)
Q Consensus       311 ~l~~~~~~-~c~~l  323 (340)
                      ++.++... .|+..
T Consensus       503 ~l~~N~~~c~c~~~  516 (562)
T 3a79_B          503 WLHDNPWDCTCPGI  516 (562)
T ss_dssp             ECCSCCBCCCHHHH
T ss_pred             EecCCCcCCCcchH
Confidence            99997554 47653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.34  E-value=2.2e-05  Score=67.93  Aligned_cols=146  Identities=16%  Similarity=0.127  Sum_probs=88.8

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEE---E-EC
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVE---I-SA  240 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~---i-~~  240 (340)
                      .+.++++|++|+|.++.+..-. ...+..+++|++|++.++. +..+...  ..+++|+.|.+.++. +..+.   + ..
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  123 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHL  123 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred             HhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhcccC
Confidence            5678899999999887654211 1124678899999998885 3322111  234788999888775 33321   2 24


Q ss_pred             CceeEEEEeccce-----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcc----eEEEE------cccCCcCCC
Q 019478          241 PSVRSFKYYGPEI-----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLE----TLELG------FVLNAVSIL  305 (340)
Q Consensus       241 p~L~~l~l~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~----~L~l~------~~~~~~~f~  305 (340)
                      ++|+.|.++++..     +-.++.+++|+.+++....-..   .....+..+++++    .|++.      ++.......
T Consensus       124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~  200 (276)
T 2z62_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI  200 (276)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE---ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC
T ss_pred             CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc---CCHHHhhhhhhccccceeeecCCCcccccCccccCCC
Confidence            8899999887743     2246678889988887652111   1112223344444    56665      333344445


Q ss_pred             cceEEEEEcCCch
Q 019478          306 NLKCFRVVNNFLC  318 (340)
Q Consensus       306 ~L~~L~l~~~~~~  318 (340)
                      +|++|++.++.+.
T Consensus       201 ~L~~L~L~~n~l~  213 (276)
T 2z62_A          201 RLKELALDTNQLK  213 (276)
T ss_dssp             CEEEEECCSSCCS
T ss_pred             cccEEECCCCcee
Confidence            8999999985444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.29  E-value=0.00017  Score=57.16  Aligned_cols=116  Identities=13%  Similarity=0.126  Sum_probs=60.2

Q ss_pred             CccceEEeeeecCCc-ceEE-EeccCCCcceEEEEecCCceEEE--EECCceeEEEEecccee----eecCCCcccceEE
Q 019478          196 CPLLARLRVVFSLDL-LSLK-VVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSFKYYGPEIK----LRMENVPQLLDIS  267 (340)
Q Consensus       196 cp~Le~L~L~~c~~~-~~l~-i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~  267 (340)
                      .+.|++|++.+|.-. ..+. .-..+++|+.|.+.+|. ++.+.  -..++|+.|+++++...    ..+..+++|+.++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            578999999998622 1211 11344788888888886 54431  11366666666655321    1123356666666


Q ss_pred             EeeccCchhhhhhhhhhccCCCcceEEEE------ccc----CCcCCCcceEEEEEc
Q 019478          268 IGGGYGVRMKHAISPIMSYFHQLETLELG------FVL----NAVSILNLKCFRVVN  314 (340)
Q Consensus       268 l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~----~~~~f~~L~~L~l~~  314 (340)
                      +..+.-..+.  ....+..+++|+.|++.      .+.    .+..+++|++|++..
T Consensus       102 Ls~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          102 LSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             CBSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             ccCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            5544111000  01234455666666665      122    334555666665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.26  E-value=2.3e-05  Score=66.78  Aligned_cols=124  Identities=14%  Similarity=0.125  Sum_probs=73.2

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE----EC
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI----SA  240 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i----~~  240 (340)
                      .+.++++|++|+|.+..+..- ....+..+++|+.|++.++. ++.+...  ...++|+.|.++++. ++.+.-    ..
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  130 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL  130 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccC
Confidence            456778888888877665431 11224567788888887764 2221100  233677888887765 444332    14


Q ss_pred             CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478          241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      ++|+.|+++++...    ..++.+++|+.+.+....   +.......+..+++|+.|++.
T Consensus       131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ---LQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEECC
T ss_pred             CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc---CCccCHHHHhCCCCCCEEEee
Confidence            77888888776432    125567788888776541   111222345677888888886

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.24  E-value=0.00015  Score=67.50  Aligned_cols=99  Identities=16%  Similarity=0.053  Sum_probs=45.2

Q ss_pred             CCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEeeccCchh-------------hhhhhhhhcc
Q 019478          220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRM-------------KHAISPIMSY  286 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~-------------~~~~~~ll~~  286 (340)
                      ++|+.|.++++. ++.+.-..++|+.|+++++.........++|+.+++....-..+             ...+..+...
T Consensus       257 ~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~  335 (454)
T 1jl5_A          257 PSLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL  335 (454)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC
T ss_pred             cccCEEECCCCc-ccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc
Confidence            456666665554 33333334677777777664322112224555554433200000             0012223334


Q ss_pred             CCCcceEEEE---cccCCcCCCcceEEEEEcCCchh
Q 019478          287 FHQLETLELG---FVLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       287 ~~~L~~L~l~---~~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      +++|+.|++.   +......+++|++|++.++.+..
T Consensus       336 ~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          336 PPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred             CCcCCEEECCCCccccccchhhhccEEECCCCCCCc
Confidence            5666666665   11111145677777777654443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.24  E-value=0.00039  Score=61.10  Aligned_cols=148  Identities=13%  Similarity=0.097  Sum_probs=97.4

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhc--CccceEEeeeecCCcceE--EEe-ccCCCcceEEEEecCCceE-------EE-
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYS--CPLLARLRVVFSLDLLSL--KVV-GSSVKLKYLDICYCYFMEE-------VE-  237 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~--cp~Le~L~L~~c~~~~~l--~i~-~~~~~L~~L~l~~c~~l~~-------l~-  237 (340)
                      ...++.|.+..+.+++..+..+...  ++.|++|++.+|.-....  .+. ...++|+.|.++++. +..       +. 
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~  141 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ  141 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence            3457888998888888777665543  677999999999632211  111 345899999999987 332       10 


Q ss_pred             EECCceeEEEEecccee----eecCCCcccceEEEeeccCch-hhhhhhhhhccCCCcceEEEE---c---cc----CCc
Q 019478          238 ISAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVR-MKHAISPIMSYFHQLETLELG---F---VL----NAV  302 (340)
Q Consensus       238 i~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~-~~~~~~~ll~~~~~L~~L~l~---~---~~----~~~  302 (340)
                      ...++|++|.++++...    -.++.+++|+.+++....-.. ........+..+++|+.|.+.   +   +.    .+.
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            13689999999987532    235678899999887652111 011112334678899999998   1   22    234


Q ss_pred             CCCcceEEEEEcCCchh
Q 019478          303 SILNLKCFRVVNNFLCF  319 (340)
Q Consensus       303 ~f~~L~~L~l~~~~~~~  319 (340)
                      .+++|++|++.++.+..
T Consensus       222 ~l~~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRA  238 (310)
T ss_dssp             HTCCCSSEECTTSCCCC
T ss_pred             cCCCCCEEECCCCCCCc
Confidence            66899999998855443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.22  E-value=6e-06  Score=74.94  Aligned_cols=123  Identities=13%  Similarity=0.123  Sum_probs=58.1

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE---E----EeccCCCcceEEEEecCCceEEE-------
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL---K----VVGSSVKLKYLDICYCYFMEEVE-------  237 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l---~----i~~~~~~L~~L~l~~c~~l~~l~-------  237 (340)
                      ++|++|+|.++.+++.++..+...+++|++|+|.+|. ++..   .    +....++|+.|++++|. +++..       
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            5666666666666666665555555666666666663 2110   0    00122556666666664 32210       


Q ss_pred             -EECCceeEEEEecccee--------eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE
Q 019478          238 -ISAPSVRSFKYYGPEIK--------LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       238 -i~~p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                       -..++|++|+++++...        -.+...++|+++++..+. .+.-...+...+...++|+.|+|.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls  247 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY  247 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence             12355666666555321        012334456655555441 111011233334455556666655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.18  E-value=8e-05  Score=72.90  Aligned_cols=36  Identities=17%  Similarity=0.153  Sum_probs=23.4

Q ss_pred             hhccCCCcceEEEE------c-ccCCcCCCcceEEEEEcCCch
Q 019478          283 IMSYFHQLETLELG------F-VLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       283 ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      .+.++++|+.|++.      + +..+..+++|++|++.++.+.
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred             ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence            35567777777776      2 234566777888888775443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.17  E-value=3.6e-05  Score=69.39  Aligned_cols=146  Identities=10%  Similarity=0.014  Sum_probs=98.1

Q ss_pred             CCCceEEeeeEEecHHH---HHHHHhc-CccceEEeeeecCCcceEE---E----eccCCCcceEEEEecCCceEEEE--
Q 019478          172 KSLRSLCLDAVNVSGEV---LEFFIYS-CPLLARLRVVFSLDLLSLK---V----VGSSVKLKYLDICYCYFMEEVEI--  238 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~---l~~lls~-cp~Le~L~L~~c~~~~~l~---i----~~~~~~L~~L~l~~c~~l~~l~i--  238 (340)
                      ++|++|+|.++.+++.+   +...+.. ++.|++|++.+|. ++...   +    .....+|++|.+++|. +++...  
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~  186 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAE  186 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHH
Confidence            89999999999887654   4444555 6799999999985 32111   1    1111499999999986 443221  


Q ss_pred             ------EC-CceeEEEEeccceee--------ecCC-CcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE-----
Q 019478          239 ------SA-PSVRSFKYYGPEIKL--------RMEN-VPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG-----  296 (340)
Q Consensus       239 ------~~-p~L~~l~l~~~~~~~--------~~~~-~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~-----  296 (340)
                            .. ++|+.|+++++...-        .+.. .++|+++++..+. .......+..++..+++|+.|++.     
T Consensus       187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence                  12 599999999874321        1222 4689999998762 111123455677899999999998     


Q ss_pred             ---------cccCCcCCCcceEEEEEcCCchh
Q 019478          297 ---------FVLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       297 ---------~~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                               ++..++.+++|+.|++.++.+..
T Consensus       267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             TCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             ccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence                     23456677788888887765543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.15  E-value=5e-05  Score=73.33  Aligned_cols=119  Identities=14%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             CCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEE----CCceeEE
Q 019478          173 SLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEIS----APSVRSF  246 (340)
Q Consensus       173 ~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~----~p~L~~l  246 (340)
                      ++++|+|++..++.=. ..-+.++++|+.|+|.+|. ++.+.-.  ..+++|++|.++++. ++.+...    .++|++|
T Consensus        53 ~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred             CCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence            6788888765543100 0114567788888887774 3322111  133677777777765 5555432    3677777


Q ss_pred             EEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478          247 KYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       247 ~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      ++.++..    ...++++++|+++++....-.  ......++..+++|+.|++.
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQ--SFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC--CCCCCGGGGGCTTCCEEECC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccc--cCCCchhhccchhhhhhccc
Confidence            7776632    223667788888887654111  01123455677888888876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.14  E-value=1.3e-05  Score=62.38  Aligned_cols=112  Identities=11%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEEECCce
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEISAPSV  243 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L  243 (340)
                      |..+..+++|+.|++.++.+.+-   ..+..+++|+.|++.++.-...+ .....+++|+.|.++++. ++++.      
T Consensus        35 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~------  104 (149)
T 2je0_A           35 EGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLS------  104 (149)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHH------
T ss_pred             HHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChH------
Confidence            34457889999999988876543   34567889999999888532211 011123566666666654 22210      


Q ss_pred             eEEEEeccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEE
Q 019478          244 RSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLEL  295 (340)
Q Consensus       244 ~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l  295 (340)
                               ....++.+++|+.+++..+.-..........+..+++|+.|++
T Consensus       105 ---------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          105 ---------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ---------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ---------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence                     0122455667777666544111111111234567777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.12  E-value=7.8e-05  Score=64.11  Aligned_cols=135  Identities=13%  Similarity=0.160  Sum_probs=63.1

Q ss_pred             CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE-EECCceeEEEE
Q 019478          170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-ISAPSVRSFKY  248 (340)
Q Consensus       170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i~~p~L~~l~l  248 (340)
                      .+++|+.|++.++.+.+-  . -+..+++|++|++.++. ++.+.--..+++|+.|.++++. ++++. +..++|+.|.+
T Consensus        39 ~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L  113 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFL  113 (263)
T ss_dssp             HHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEEC
T ss_pred             hcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEEc
Confidence            455666666655544321  1 13456666666666653 2111001233566666666554 22210 11156666666


Q ss_pred             ecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----cccCCcCCCcceEEEEEc
Q 019478          249 YGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----FVLNAVSILNLKCFRVVN  314 (340)
Q Consensus       249 ~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~~~~~~~f~~L~~L~l~~  314 (340)
                      +++...  -.++.+++|+.+++....-..+     ..+..+++|+.|++.     ....+..+++|+.|++.+
T Consensus       114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEE
T ss_pred             cCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCC
Confidence            655321  1244556666665543311110     124455666666665     113344555666666655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.02  E-value=6.4e-05  Score=61.99  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----EC
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SA  240 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~  240 (340)
                      .+.++++|++|+|.+..+..- ....+..+++|++|++.++. ++.+.-  -...++|+.|.++++. ++.+.-    ..
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  123 (208)
T 2o6s_A           47 VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKL  123 (208)
T ss_dssp             TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccC
Confidence            357889999999988776521 12234678999999999885 332111  0234678888887765 433221    12


Q ss_pred             CceeEEEEecc
Q 019478          241 PSVRSFKYYGP  251 (340)
Q Consensus       241 p~L~~l~l~~~  251 (340)
                      ++|+.|+++++
T Consensus       124 ~~L~~L~l~~N  134 (208)
T 2o6s_A          124 TQLKDLRLYQN  134 (208)
T ss_dssp             TTCCEEECCSS
T ss_pred             CcCCEEECCCC
Confidence            55666655554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.98  E-value=0.00037  Score=58.07  Aligned_cols=125  Identities=12%  Similarity=0.057  Sum_probs=71.5

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEECCceeEEEEe
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEISAPSVRSFKYY  249 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~  249 (340)
                      ++|+.|+|.+..+..-. ...+..+++|+.|+|.++. +..+.-.  ...++|+.|.++++. ++.+.            
T Consensus        32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~------------   96 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELP------------   96 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCC------------
T ss_pred             cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccC------------
Confidence            68888888876553210 1124567888888888774 2221000  122455555555443 22111            


Q ss_pred             ccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEEcCCch
Q 019478          250 GPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       250 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~  318 (340)
                          ...+.++++|+.+.+....   +.......+.++++|+.|+|.      + +..+..+++|++|++.++...
T Consensus        97 ----~~~f~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           97 ----KSLFEGLFSLQLLLLNANK---INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ----TTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ----HhHccCCCCCCEEECCCCC---CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence                1124567777777776541   111222345678888888887      2 234667889999999886543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.97  E-value=0.00029  Score=67.46  Aligned_cols=132  Identities=14%  Similarity=0.058  Sum_probs=89.6

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEEec
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYG  250 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~  250 (340)
                      +++|++|+|.++.++.  +.   ..+++|+.|++.++. ++.  ++....+|+.|.++++. ++.+.-..++|+.|++++
T Consensus        79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip~l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~  149 (571)
T 3cvr_A           79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LST--LPELPASLKHLDVDNNQ-LTMLPELPALLEYINADN  149 (571)
T ss_dssp             CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSC--CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCC--cchhhcCCCEEECCCCc-CCCCCCcCccccEEeCCC
Confidence            5889999999887762  33   568999999999984 333  22222499999999886 554433578999999998


Q ss_pred             cceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcc-------eEEEEEcCCc
Q 019478          251 PEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNL-------KCFRVVNNFL  317 (340)
Q Consensus       251 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L-------~~L~l~~~~~  317 (340)
                      +........+++|+.+++..+.-..    +.. +.  ++|+.|+|.      +|. ++  .+|       +.|++.+|.+
T Consensus       150 N~l~~lp~~l~~L~~L~Ls~N~L~~----lp~-l~--~~L~~L~Ls~N~L~~lp~-~~--~~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          150 NQLTMLPELPTSLEVLSVRNNQLTF----LPE-LP--ESLEALDVSTNLLESLPA-VP--VRNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSC----CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCC
T ss_pred             CccCcCCCcCCCcCEEECCCCCCCC----cch-hh--CCCCEEECcCCCCCchhh-HH--HhhhcccccceEEecCCCcc
Confidence            8653333367889999887652111    112 22  899999998      333 22  278       9999998766


Q ss_pred             hhhh
Q 019478          318 CFCL  321 (340)
Q Consensus       318 ~~c~  321 (340)
                      ...|
T Consensus       220 ~~lp  223 (571)
T 3cvr_A          220 THIP  223 (571)
T ss_dssp             CCCC
T ss_pred             eecC
Confidence            6444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.96  E-value=9.7e-06  Score=66.58  Aligned_cols=100  Identities=20%  Similarity=0.265  Sum_probs=56.8

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEE-E-ECCce
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVE-I-SAPSV  243 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L  243 (340)
                      .+..+++|++|+|.++.+.+  +. .+..+++|+.|++.++. ++.+ .....+++|+.|.++++. ++.+. + ..++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCCccccCCCC
Confidence            34577888999988887755  22 35667888888888874 2211 001122577777777764 33321 0 13556


Q ss_pred             eEEEEecccee-----eecCCCcccceEEEeec
Q 019478          244 RSFKYYGPEIK-----LRMENVPQLLDISIGGG  271 (340)
Q Consensus       244 ~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~  271 (340)
                      +.|+++++...     -.+..+++|+.+.+...
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            66666555321     12445556666655443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.93  E-value=0.00047  Score=57.42  Aligned_cols=130  Identities=9%  Similarity=0.033  Sum_probs=72.7

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEISAPSVRSFKY  248 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l  248 (340)
                      .+.++.|+|.+..+..-.-...+..+++|+.|++.++. ++.+.-.  ...++|+.|.++++. ++.+            
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~------------   96 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENV------------   96 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCC------------
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCcc------------
Confidence            34677888877655321111224567788888887764 3221100  122445555554443 2211            


Q ss_pred             eccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCch-hh
Q 019478          249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLC-FC  320 (340)
Q Consensus       249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~-~c  320 (340)
                          ..-.++.+++|+.+.+....   +.......+.++++|+.|+|.       .+..+..+++|+.|++.++... .|
T Consensus        97 ----~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           97 ----QHKMFKGLESLKTLMLRSNR---ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             ----CGGGGTTCSSCCEEECTTSC---CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ----CHhHhcCCcCCCEEECCCCc---CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence                11125567777777775441   111222345578888888887       2566778889999999986544 45


Q ss_pred             h
Q 019478          321 L  321 (340)
Q Consensus       321 ~  321 (340)
                      +
T Consensus       170 ~  170 (220)
T 2v70_A          170 Y  170 (220)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.84  E-value=5.2e-05  Score=68.71  Aligned_cols=36  Identities=17%  Similarity=0.062  Sum_probs=16.0

Q ss_pred             CCCceEEeeeEEecHHHHHHHH----hcCccceEEeeeec
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFI----YSCPLLARLRVVFS  207 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~ll----s~cp~Le~L~L~~c  207 (340)
                      ++|+.|+|.++.+++.+...+.    ..++.|++|+|.+|
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n  165 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN  165 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence            4455555555444444332221    12444555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.78  E-value=6.7e-05  Score=66.69  Aligned_cols=151  Identities=15%  Similarity=0.088  Sum_probs=88.9

Q ss_pred             CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE----EC
Q 019478          165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI----SA  240 (340)
Q Consensus       165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i----~~  240 (340)
                      +..+.++++|++|+|.++.+..-. ...+..+++|++|++.++. ++.+..... ++|++|.+.++. ++.+..    ..
T Consensus        71 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~~l  146 (332)
T 2ft3_A           71 KDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNH-LVEIPPNLP-SSLVELRIHDNR-IRKVPKGVFSGL  146 (332)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSC-CCSCCSSCC-TTCCEEECCSSC-CCCCCSGGGSSC
T ss_pred             HhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCc-CCccCcccc-ccCCEEECCCCc-cCccCHhHhCCC
Confidence            345788999999999877654211 1225678999999999875 222111111 689999998876 444332    24


Q ss_pred             CceeEEEEecccee------eecCCCcccceEEEeecc------------------CchhhhhhhhhhccCCCcceEEEE
Q 019478          241 PSVRSFKYYGPEIK------LRMENVPQLLDISIGGGY------------------GVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       241 p~L~~l~l~~~~~~------~~~~~~~~L~~l~l~~~~------------------~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      ++|+.|++.++...      ..+..+ +|+.+.+....                  ...+.......+..+++|+.|++.
T Consensus       147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            78888888776431      112222 34444333220                  001111122345677888888887


Q ss_pred             -------cccCCcCCCcceEEEEEcCCchhh
Q 019478          297 -------FVLNAVSILNLKCFRVVNNFLCFC  320 (340)
Q Consensus       297 -------~~~~~~~f~~L~~L~l~~~~~~~c  320 (340)
                             .+..+..+++|++|++.++.+...
T Consensus       226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  256 (332)
T 2ft3_A          226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRV  256 (332)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred             CCcCCcCChhHhhCCCCCCEEECCCCcCeec
Confidence                   223466788899999988655433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.73  E-value=0.0036  Score=59.67  Aligned_cols=147  Identities=11%  Similarity=0.038  Sum_probs=87.9

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhc--CccceEEeeeecCCcce---------------EEEec--------------
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYS--CPLLARLRVVFSLDLLS---------------LKVVG--------------  217 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~--cp~Le~L~L~~c~~~~~---------------l~i~~--------------  217 (340)
                      .++++|+.|.|.++.+.+..+..+...  .+.|++|++.+|.-.+.               +.+..              
T Consensus       246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~  325 (562)
T 3a79_B          246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY  325 (562)
T ss_dssp             HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHH
T ss_pred             hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhh
Confidence            356777788888888887765554432  56899999998841110               10000              


Q ss_pred             ---cCCCcceEEEEecCCceEEE--EECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCC
Q 019478          218 ---SSVKLKYLDICYCYFMEEVE--ISAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFH  288 (340)
Q Consensus       218 ---~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~  288 (340)
                         ...+|+.|.+.++. +..+.  -..++|+.|+++++..    +..++.+++|+.+.+....-..+. .+...+.+++
T Consensus       326 ~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~l~  403 (562)
T 3a79_B          326 SVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMS  403 (562)
T ss_dssp             HHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-HHHHTTTTCT
T ss_pred             hhhccCcceEEEccCCC-cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc-cchhhhcCCC
Confidence               00235566665554 22222  2347888888887643    223566788888888654211111 2234466888


Q ss_pred             CcceEEEE-------ccc-CCcCCCcceEEEEEcCCc
Q 019478          289 QLETLELG-------FVL-NAVSILNLKCFRVVNNFL  317 (340)
Q Consensus       289 ~L~~L~l~-------~~~-~~~~f~~L~~L~l~~~~~  317 (340)
                      +|+.|++.       ++. .+..+++|++|++.++.+
T Consensus       404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence            99999987       222 255678899999888655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.72  E-value=0.00087  Score=60.34  Aligned_cols=142  Identities=17%  Similarity=0.088  Sum_probs=84.3

Q ss_pred             hcCccceEEeeeecCC----cceE------EEeccCCCcceEEEEecCCceEEEEECCceeEEEEecccee------eec
Q 019478          194 YSCPLLARLRVVFSLD----LLSL------KVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIK------LRM  257 (340)
Q Consensus       194 s~cp~Le~L~L~~c~~----~~~l------~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~------~~~  257 (340)
                      ...|+|+.|.+.....    ++.+      .+...+++|++|.+.++..+.--.+..|+|+.|.+..+...      +..
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHH
Confidence            4578999999865321    1111      11124489999999987432211134799999999866432      122


Q ss_pred             CCCcccceEEEeec---cC-chhhhhhhhhhc--cCCCcceEEEE---c----c---cCCcCCCcceEEEEEcCCchhhh
Q 019478          258 ENVPQLLDISIGGG---YG-VRMKHAISPIMS--YFHQLETLELG---F----V---LNAVSILNLKCFRVVNNFLCFCL  321 (340)
Q Consensus       258 ~~~~~L~~l~l~~~---~~-~~~~~~~~~ll~--~~~~L~~L~l~---~----~---~~~~~f~~L~~L~l~~~~~~~c~  321 (340)
                      ..+|+|+++.|...   +. ......+..++.  .+|+|+.|.+.   +    .   ...+.+++|++|++.++.+..--
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence            46899999999653   11 110112233443  58999999997   1    1   12357899999999886655421


Q ss_pred             -HHHHHHHHhccccc
Q 019478          322 -ILLLFLRKICNSHN  335 (340)
Q Consensus       322 -~l~~~~l~~cp~~~  335 (340)
                       .-....++.+|+++
T Consensus       296 ~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          296 ARLLLDHVDKIKHLK  310 (362)
T ss_dssp             HHHHHTTHHHHTTCS
T ss_pred             HHHHHhhcccCCcce
Confidence             11111245566543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.60  E-value=0.00019  Score=64.68  Aligned_cols=145  Identities=17%  Similarity=0.128  Sum_probs=78.9

Q ss_pred             CCCceEEeeeEEecHHHHHHHHh-cCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE----ECCcee
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIY-SCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI----SAPSVR  244 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls-~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i----~~p~L~  244 (340)
                      +.++.|+|.+..++.-.- ..+. .+++|+.|+|.++. +..+.-.  ..+++|+.|.++++. ++.+.-    ..++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence            456677776655432110 1122 56777777777663 2221100  133667777777665 554432    137777


Q ss_pred             EEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhh---ccCCCcceEEEE---c---c-cCCcCCCc--ce
Q 019478          245 SFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIM---SYFHQLETLELG---F---V-LNAVSILN--LK  308 (340)
Q Consensus       245 ~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll---~~~~~L~~L~l~---~---~-~~~~~f~~--L~  308 (340)
                      .|.++++...    ..+.++++|+.+++....-..   .-..++   ..+++|+.|+|.   +   + ..+..+++  |+
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR---FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS---CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCe---eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence            7777766432    236678888888886551111   111222   568899999987   1   1 22334554  47


Q ss_pred             EEEEEcCCch-hhhH
Q 019478          309 CFRVVNNFLC-FCLI  322 (340)
Q Consensus       309 ~L~l~~~~~~-~c~~  322 (340)
                      .|.+.+|... .|..
T Consensus       193 ~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          193 GLYLHNNPLECDCKL  207 (361)
T ss_dssp             TEECCSSCEECCHHH
T ss_pred             eEEecCCCccCCcCc
Confidence            8888886554 4543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.45  E-value=0.0012  Score=59.26  Aligned_cols=121  Identities=14%  Similarity=0.087  Sum_probs=83.0

Q ss_pred             CccceEEeeeecCCcceEEEe--c-cCCCcceEEEEecCCceEEEEE----CCceeEEEEeccceee----ecCCCcccc
Q 019478          196 CPLLARLRVVFSLDLLSLKVV--G-SSVKLKYLDICYCYFMEEVEIS----APSVRSFKYYGPEIKL----RMENVPQLL  264 (340)
Q Consensus       196 cp~Le~L~L~~c~~~~~l~i~--~-~~~~L~~L~l~~c~~l~~l~i~----~p~L~~l~l~~~~~~~----~~~~~~~L~  264 (340)
                      .+.++.|+|.++. ++.+...  . ..++|+.|.++++. ++.+.-.    .++|+.|+++++....    .+.++++|+
T Consensus        38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            4568999999884 4432211  1 45899999999886 6665422    4899999999885422    356789999


Q ss_pred             eEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccC-C---cCCCcceEEEEEcCCchhhh
Q 019478          265 DISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLN-A---VSILNLKCFRVVNNFLCFCL  321 (340)
Q Consensus       265 ~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~-~---~~f~~L~~L~l~~~~~~~c~  321 (340)
                      .+.+....   +.......+.++++|+.|+|.      ++.. +   ..+++|++|++.++.+...|
T Consensus       116 ~L~L~~N~---i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          116 VLLLYNNH---IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             EEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             EEECCCCc---ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            99987552   111223456789999999998      3332 2   46889999999997666544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.35  E-value=0.00044  Score=66.69  Aligned_cols=151  Identities=11%  Similarity=0.113  Sum_probs=87.4

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEE----ECCc
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEI----SAPS  242 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i----~~p~  242 (340)
                      +..+++|+.+.+.........-......++.|+.+++.++.-.... ......++|+.|.++++.....+.-    ..++
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~  495 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  495 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence            3455566666654433221111112334555666666554311000 0011336888888887753333321    2488


Q ss_pred             eeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCC-CcceEE
Q 019478          243 VRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSI-LNLKCF  310 (340)
Q Consensus       243 L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f-~~L~~L  310 (340)
                      |+.|+++++...    ..++++++|+.++|...   .+.......+.++++|+.|++.       .+..+..+ .+|+.|
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N---~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN---NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTS---CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred             cCEEECCCCccCCcChHHHcCCCCCCEEECCCC---cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence            999999987432    23678899999988654   1111223446789999999998       34455555 589999


Q ss_pred             EEEcCCc-hhhh
Q 019478          311 RVVNNFL-CFCL  321 (340)
Q Consensus       311 ~l~~~~~-~~c~  321 (340)
                      ++.+|.. +-|.
T Consensus       573 ~L~~Np~~C~C~  584 (635)
T 4g8a_A          573 NLTQNDFACTCE  584 (635)
T ss_dssp             ECTTCCBCCSGG
T ss_pred             EeeCCCCcccCC
Confidence            9998644 4465

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.32  E-value=0.0057  Score=54.58  Aligned_cols=14  Identities=7%  Similarity=0.052  Sum_probs=8.0

Q ss_pred             hhccCCCcceEEEE
Q 019478          283 IMSYFHQLETLELG  296 (340)
Q Consensus       283 ll~~~~~L~~L~l~  296 (340)
                      .+.++++|+.|+++
T Consensus       197 ~f~~l~~L~~LdLs  210 (350)
T 4ay9_X          197 VFHGASGPVILDIS  210 (350)
T ss_dssp             TTTTEECCSEEECT
T ss_pred             HhccCcccchhhcC
Confidence            34455666666665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.29  E-value=0.0011  Score=55.59  Aligned_cols=128  Identities=16%  Similarity=0.072  Sum_probs=76.7

Q ss_pred             CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478          171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEISAPSVRSFKY  248 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l  248 (340)
                      .++|++|+|.+..+..-. ...+..+++|+.|+|.++. +..+...  ..+++|+.|.++++. ++.+.           
T Consensus        39 ~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~-----------  104 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLP-----------  104 (229)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred             CCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccC-----------
Confidence            489999999987765311 1225678899999999885 3321111  123566666666554 22211           


Q ss_pred             eccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcCCc-hhh
Q 019478          249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNNFL-CFC  320 (340)
Q Consensus       249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~~~-~~c  320 (340)
                           ...+..+++|+.+.+....-.    .+..-+..+++|+.|++.      ++ ..+..+++|+.|.+.++.. +.|
T Consensus       105 -----~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          105 -----SAVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             -----TTTTTTCTTCCEEECCSSCCC----SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             -----hhHhCcchhhCeEeccCCccc----ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence                 112455677777777544111    112224678888888887      22 3466788999999988644 345


Q ss_pred             h
Q 019478          321 L  321 (340)
Q Consensus       321 ~  321 (340)
                      +
T Consensus       176 ~  176 (229)
T 3e6j_A          176 R  176 (229)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.24  E-value=0.00022  Score=59.50  Aligned_cols=102  Identities=14%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----EC
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SA  240 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~  240 (340)
                      .+..+++|++|+|.+..+..-. ...+..+++|++|+|.++. ++.+.-  -..+++|+.|.++++. +..+.-    ..
T Consensus        52 ~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l  128 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGL  128 (220)
T ss_dssp             CGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTC
T ss_pred             hhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCC
Confidence            4678999999999987654211 1125678999999999985 222111  1234788888888776 443311    23


Q ss_pred             CceeEEEEeccce----eeecCCCcccceEEEeec
Q 019478          241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGG  271 (340)
Q Consensus       241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~  271 (340)
                      ++|+.|+++++..    +-.+..+++|+.+.+...
T Consensus       129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            6777777776633    123455666777666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.14  E-value=0.0027  Score=52.73  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=50.6

Q ss_pred             CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceE
Q 019478          241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~  309 (340)
                      ++|+.|+++++..    +-.+.++++|+.+++....   +.......+.++++|+.|+|.       .+..+..+++|++
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  132 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK---ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL  132 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc---CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence            5566666655532    1236677888888886551   122233456789999999998       3456778899999


Q ss_pred             EEEEcCCch
Q 019478          310 FRVVNNFLC  318 (340)
Q Consensus       310 L~l~~~~~~  318 (340)
                      |++.++.+.
T Consensus       133 L~L~~N~l~  141 (220)
T 2v9t_B          133 LSLYDNKLQ  141 (220)
T ss_dssp             EECCSSCCS
T ss_pred             EECCCCcCC
Confidence            999985544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.11  E-value=7e-05  Score=61.32  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=58.3

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE-----ECC
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI-----SAP  241 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i-----~~p  241 (340)
                      .+.++++|+.|++.++.+.  .+......+++|++|++.++. ++.+.--..+++|+.|.++++. ++.+..     ..+
T Consensus        65 ~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~  140 (198)
T 1ds9_A           65 SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALD  140 (198)
T ss_dssp             CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTT
T ss_pred             ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCEEECCCCc-CCchhHHHHHhcCC
Confidence            4467899999999999886  344456667899999999984 3322111234789999998876 443221     358


Q ss_pred             ceeEEEEeccce
Q 019478          242 SVRSFKYYGPEI  253 (340)
Q Consensus       242 ~L~~l~l~~~~~  253 (340)
                      +|+.|.+.++..
T Consensus       141 ~L~~L~l~~N~l  152 (198)
T 1ds9_A          141 KLEDLLLAGNPL  152 (198)
T ss_dssp             TCSEEEECSCHH
T ss_pred             CCCEEEecCCcc
Confidence            999999998853

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.05  E-value=0.0025  Score=50.83  Aligned_cols=67  Identities=13%  Similarity=0.153  Sum_probs=43.5

Q ss_pred             cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcCC-chhhhHHHHH
Q 019478          257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNNF-LCFCLILLLF  326 (340)
Q Consensus       257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~~-~~~c~~l~~~  326 (340)
                      ++.+++|+.+++....   +.......+..+++|+.|++.      ++ ..+..+++|++|++.++. .+.|+.+..+
T Consensus        72 ~~~l~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l  146 (177)
T 2o6r_A           72 FDKLTKLTILYLHENK---LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  146 (177)
T ss_dssp             TTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             ccCCCccCEEECCCCC---ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHH
Confidence            4567778887776541   111223345678899999987      33 334678899999999864 4457765544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.00  E-value=0.00082  Score=64.35  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=13.9

Q ss_pred             CceEEeeeEEecHHHHHHHHhcCccceEEeeeec
Q 019478          174 LRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFS  207 (340)
Q Consensus       174 L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c  207 (340)
                      |+.|+|.++.++.  +.. +..+++|+.|+|.++
T Consensus       443 L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N  473 (567)
T 1dce_A          443 VRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN  473 (567)
T ss_dssp             CSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS
T ss_pred             ceEEEecCCCCCC--CcC-ccccccCcEeecCcc
Confidence            4555554444322  112 344455555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.85  E-value=0.0023  Score=53.47  Aligned_cols=60  Identities=15%  Similarity=0.178  Sum_probs=43.2

Q ss_pred             cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchh
Q 019478          257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      +..+++|+.+.+....   +.......+..+++|+.|.+.      +|..+..+++|++|++.++.+..
T Consensus        84 ~~~l~~L~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A           84 FDSLTQLTVLDLGTNQ---LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS  149 (229)
T ss_dssp             TTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred             cccCCCcCEEECCCCc---CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence            4667888888886541   112223446689999999998      56667788999999999865443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.84  E-value=0.011  Score=52.19  Aligned_cols=71  Identities=20%  Similarity=0.202  Sum_probs=46.0

Q ss_pred             CCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcc-eEEEE-----c-ccCCcCCCcce
Q 019478          240 APSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLE-TLELG-----F-VLNAVSILNLK  308 (340)
Q Consensus       240 ~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~-~L~l~-----~-~~~~~~f~~L~  308 (340)
                      +++|+++++.++..    ...+.++.+|+++.+...    +...-...+.+|++|+ .+.+.     + +..+..+.+|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n----i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN----LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT----CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc----cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCC
Confidence            67888888876422    234677888888877532    1222234466888888 88886     2 34566777888


Q ss_pred             EEEEEc
Q 019478          309 CFRVVN  314 (340)
Q Consensus       309 ~L~l~~  314 (340)
                      .|.+..
T Consensus       301 ~l~l~~  306 (329)
T 3sb4_A          301 YVLATG  306 (329)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            888754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=95.69  E-value=0.0029  Score=51.32  Aligned_cols=78  Identities=17%  Similarity=0.265  Sum_probs=49.2

Q ss_pred             CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceE
Q 019478          241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~  309 (340)
                      ++|++|+++++..    +-.++++++|+.+++....   +.......+.++++|+.|++.       .+..+..+++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK---IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC---CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc---CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            4555555554432    1235667778887776541   111222345678889999887       3566778899999


Q ss_pred             EEEEcCCch-hhh
Q 019478          310 FRVVNNFLC-FCL  321 (340)
Q Consensus       310 L~l~~~~~~-~c~  321 (340)
                      |++.++... .|+
T Consensus       131 L~L~~N~l~c~c~  143 (192)
T 1w8a_A          131 LNLASNPFNCNCH  143 (192)
T ss_dssp             EECTTCCBCCSGG
T ss_pred             EEeCCCCccCcCc
Confidence            999986544 454

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.16  E-value=0.0075  Score=48.88  Aligned_cols=78  Identities=15%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc-CCcCCCcceE
Q 019478          241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL-NAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~-~~~~f~~L~~  309 (340)
                      ++|+.|+++++...    -.+.++++|+.+.+....   +.......+.++++|+.|+|.      ++. .+..+++|++
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~---l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR---LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH  130 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc---cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence            55666665555321    225667888888776541   111223346688899999988      333 4667889999


Q ss_pred             EEEEcCCch-hhh
Q 019478          310 FRVVNNFLC-FCL  321 (340)
Q Consensus       310 L~l~~~~~~-~c~  321 (340)
                      |++.++... .|.
T Consensus       131 L~L~~N~~~C~c~  143 (193)
T 2wfh_A          131 LAIGANPLYCDCN  143 (193)
T ss_dssp             EECCSSCEECSGG
T ss_pred             EEeCCCCeecCCc
Confidence            999986554 353

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.15  E-value=0.016  Score=51.59  Aligned_cols=148  Identities=11%  Similarity=0.058  Sum_probs=70.2

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEE----EEC
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVE----ISA  240 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~----i~~  240 (340)
                      .+.++++|++|+|.+..+.+.-=...+.+++.|+++.+.++..+..+.-.  ..+++|+.|.+.++. +..+.    ...
T Consensus        49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~  127 (350)
T 4ay9_X           49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHS  127 (350)
T ss_dssp             SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCB
T ss_pred             HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhccc
Confidence            35667777777776654211000011344566666555555544432111  133677777777665 33221    123


Q ss_pred             CceeEEEEeccce--eee---cCCC-cccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cc-cCCcCCCc
Q 019478          241 PSVRSFKYYGPEI--KLR---MENV-PQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FV-LNAVSILN  306 (340)
Q Consensus       241 p~L~~l~l~~~~~--~~~---~~~~-~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~-~~~~~f~~  306 (340)
                      .++..+.+.+...  .+.   +... ..++.+.+...   .+...... .....+++.|.+.       ++ ..+..+++
T Consensus       128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N---~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN---GIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS---CCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             chhhhhhhccccccccccccchhhcchhhhhhccccc---cccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcc
Confidence            4556666654321  111   1222 24555554432   11111111 1123456666664       33 34567788


Q ss_pred             ceEEEEEcCCchh
Q 019478          307 LKCFRVVNNFLCF  319 (340)
Q Consensus       307 L~~L~l~~~~~~~  319 (340)
                      |+.|++.++.+..
T Consensus       204 L~~LdLs~N~l~~  216 (350)
T 4ay9_X          204 PVILDISRTRIHS  216 (350)
T ss_dssp             CSEEECTTSCCCC
T ss_pred             cchhhcCCCCcCc
Confidence            9999998855443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.14  E-value=0.018  Score=52.55  Aligned_cols=70  Identities=14%  Similarity=0.234  Sum_probs=42.0

Q ss_pred             CCceeEEEEeccce---------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----c-ccCCcCC
Q 019478          240 APSVRSFKYYGPEI---------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----F-VLNAVSI  304 (340)
Q Consensus       240 ~p~L~~l~l~~~~~---------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~-~~~~~~f  304 (340)
                      +++|+++.+.+...         ...+.+|++|+.+.+.-.    +...-...+.+|++|+.+.|.     + ...+..+
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~----i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~  345 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES----IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT  345 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc----eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC
Confidence            46777777665422         234566777777666421    111222345678888888886     2 2345566


Q ss_pred             CcceEEEEEc
Q 019478          305 LNLKCFRVVN  314 (340)
Q Consensus       305 ~~L~~L~l~~  314 (340)
                       +|+.+.+..
T Consensus       346 -~L~~l~l~~  354 (401)
T 4fdw_A          346 -GIKEVKVEG  354 (401)
T ss_dssp             -CCCEEEECC
T ss_pred             -CCCEEEEcC
Confidence             888888876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.98  E-value=0.0053  Score=60.57  Aligned_cols=102  Identities=15%  Similarity=0.087  Sum_probs=55.6

Q ss_pred             HhcCccceEEeeeecCCcceEEEec---cCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEe
Q 019478          193 IYSCPLLARLRVVFSLDLLSLKVVG---SSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIG  269 (340)
Q Consensus       193 ls~cp~Le~L~L~~c~~~~~l~i~~---~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~  269 (340)
                      +..++.|+.|+|.++.- ..  ++.   .+++|+.|.++++. ++.+                 +-.++.+++|+.+.|.
T Consensus       220 ~~~l~~L~~L~Ls~n~l-~~--l~~~~~~l~~L~~L~Ls~N~-l~~l-----------------p~~~~~l~~L~~L~Ls  278 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQI-FN--ISANIFKYDFLTRLYLNGNS-LTEL-----------------PAEIKNLSNLRVLDLS  278 (727)
T ss_dssp             --CCCCCCEEECTTSCC-SC--CCGGGGGCCSCSCCBCTTSC-CSCC-----------------CGGGGGGTTCCEEECT
T ss_pred             hccCCCCcEEECCCCCC-CC--CChhhcCCCCCCEEEeeCCc-Cccc-----------------ChhhhCCCCCCEEeCc
Confidence            45567777777776642 11  111   22445555555443 2211                 1124455666666665


Q ss_pred             eccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchh
Q 019478          270 GGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       270 ~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      .+.   +. .+..-+.++++|+.|.|.      +|..+..+++|++|+|.++.+..
T Consensus       279 ~N~---l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          279 HNR---LT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TSC---CS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCc---CC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            431   11 122234567778888777      56667788899999998866653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.91  E-value=0.002  Score=52.00  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             CCCCCCceEEeeeE-EecHHHHHH---HHhcCccceEEeeeecC
Q 019478          169 SNIKSLRSLCLDAV-NVSGEVLEF---FIYSCPLLARLRVVFSL  208 (340)
Q Consensus       169 ~~~~~L~~L~L~~~-~i~~~~l~~---lls~cp~Le~L~L~~c~  208 (340)
                      ...++|++|+|.++ .++++++..   .+..++.|++|+|.+|.
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~   76 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   76 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence            45788888888888 788766444   34557888888888875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=94.48  E-value=0.023  Score=44.91  Aligned_cols=81  Identities=17%  Similarity=0.266  Sum_probs=53.6

Q ss_pred             CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceE
Q 019478          241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~  309 (340)
                      ++|+.|+++++...    -.++.+++|+.+++....   +.......+.++++|+.|+|.      ++ ..+..+++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ---LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC---cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence            56677776666432    235678888888886551   222233456788999999998      33 34678889999


Q ss_pred             EEEEcCCc-hhhhHHH
Q 019478          310 FRVVNNFL-CFCLILL  324 (340)
Q Consensus       310 L~l~~~~~-~~c~~l~  324 (340)
                      |.+.+|.. +.|+.+.
T Consensus       107 L~L~~N~~~c~c~~l~  122 (170)
T 3g39_A          107 IWLLNNPWDCACSDIL  122 (170)
T ss_dssp             EECCSSCBCTTBGGGH
T ss_pred             EEeCCCCCCCCchhHH
Confidence            99999754 3454443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=94.48  E-value=0.0041  Score=50.35  Aligned_cols=98  Identities=12%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEEE----CCceeE
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEIS----APSVRS  245 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i~----~p~L~~  245 (340)
                      ++|++|+|.+..+..-.-...+...++|++|+|.++. ++.+.-  -...++|+.|.++++. ++.+.-.    .++|+.
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence            3777777776655321111124566777777777764 222100  0123667777777665 4444321    366777


Q ss_pred             EEEecccee----eecCCCcccceEEEeec
Q 019478          246 FKYYGPEIK----LRMENVPQLLDISIGGG  271 (340)
Q Consensus       246 l~l~~~~~~----~~~~~~~~L~~l~l~~~  271 (340)
                      |+++++...    -.++.+++|+.+++...
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          107 LNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             EECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            777666432    23455677777776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.37  E-value=0.008  Score=57.48  Aligned_cols=111  Identities=13%  Similarity=0.030  Sum_probs=78.7

Q ss_pred             CCcceEEEEecCCceEEEE--ECCceeEEEEeccce---eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEE
Q 019478          220 VKLKYLDICYCYFMEEVEI--SAPSVRSFKYYGPEI---KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLE  294 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~l~i--~~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  294 (340)
                      ..|+.|.++++. ++.+.-  ..++|+.|+++++..   +-.++.+++|+.+.+....-..    +. -+.++++|+.|+
T Consensus       441 ~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~----lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          441 ADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN----VD-GVANLPRLQELL  514 (567)
T ss_dssp             TTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC----CG-GGTTCSSCCEEE
T ss_pred             cCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC----Cc-ccCCCCCCcEEE
Confidence            367788888775 444321  247899999988743   2346778899999887652111    22 467899999999


Q ss_pred             EE------c--ccCCcCCCcceEEEEEcCCchhhhHHHHHHHHhcccccc
Q 019478          295 LG------F--VLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNV  336 (340)
Q Consensus       295 l~------~--~~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~~~  336 (340)
                      |.      +  |..+..+++|+.|++.++.+...|.........+|+++.
T Consensus       515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            98      3  677788999999999998777766655556677787653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.08  E-value=0.0029  Score=51.07  Aligned_cols=120  Identities=10%  Similarity=-0.026  Sum_probs=63.9

Q ss_pred             HHHHHHHHhcCccceEEeeeecCCcceEE---Ee---ccCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCC
Q 019478          186 GEVLEFFIYSCPLLARLRVVFSLDLLSLK---VV---GSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMEN  259 (340)
Q Consensus       186 ~~~l~~lls~cp~Le~L~L~~c~~~~~l~---i~---~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~  259 (340)
                      ++.+..++..++.|++|+|.+|..++.-.   +.   ...++|++|.++++. +.+-...            ...-.+..
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~------------~l~~~L~~   91 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAF------------ALAEMLKV   91 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHH------------HHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHH------------HHHHHHHh
Confidence            45688889999999999999984443211   11   123677777777765 2210000            00000112


Q ss_pred             CcccceEEEeec-cCchhhhhhhhhhccCCCcceEEE--E-----------cccCCcCCCcceEEEEEcCCch
Q 019478          260 VPQLLDISIGGG-YGVRMKHAISPIMSYFHQLETLEL--G-----------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       260 ~~~L~~l~l~~~-~~~~~~~~~~~ll~~~~~L~~L~l--~-----------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      .++|++++|..+ .++.-...+...+...++|++|+|  .           +.+.+...++|++|++.++.++
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            344555555443 111111234445556666777777  4           2233445567788877765544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.02  E-value=0.057  Score=47.48  Aligned_cols=36  Identities=11%  Similarity=0.176  Sum_probs=22.9

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL  208 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~  208 (340)
                      .+++.+.+.+. +...++..+...|++|++|+|.++.
T Consensus       202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~  237 (329)
T 3sb4_A          202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN  237 (329)
T ss_dssp             GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred             cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC
Confidence            34445555443 4555666666678888888888653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=93.41  E-value=0.048  Score=43.21  Aligned_cols=75  Identities=12%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc-CCcCCCcceE
Q 019478          241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL-NAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~-~~~~f~~L~~  309 (340)
                      ++|+.|.++++..    +-.++.+++|+.+++...   .+.......+.++++|+.|+|.      ++. .+..+++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN---KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC---CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence            5666666666533    123567788888888655   1122223445688999999998      333 3677889999


Q ss_pred             EEEEcCCch
Q 019478          310 FRVVNNFLC  318 (340)
Q Consensus       310 L~l~~~~~~  318 (340)
                      |.+.++...
T Consensus       110 L~L~~N~~~  118 (174)
T 2r9u_A          110 IYLYNNPWD  118 (174)
T ss_dssp             EECCSSCBC
T ss_pred             EEeCCCCcc
Confidence            999997554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=92.57  E-value=0.052  Score=43.81  Aligned_cols=76  Identities=17%  Similarity=0.138  Sum_probs=51.7

Q ss_pred             CceeEEEEeccce---eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEE
Q 019478          241 PSVRSFKYYGPEI---KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCF  310 (340)
Q Consensus       241 p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L  310 (340)
                      ++|+.|.+.++..   +-.+..+++|+.+.+....   +.......+.++++|+.|+|.       .+..+..+++|++|
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR---ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc---CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            4666666665532   1246678889999887551   122223456789999999998       23457788999999


Q ss_pred             EEEcCCchh
Q 019478          311 RVVNNFLCF  319 (340)
Q Consensus       311 ~l~~~~~~~  319 (340)
                      ++.++.+..
T Consensus       108 ~L~~N~l~~  116 (193)
T 2wfh_A          108 SLHGNDISV  116 (193)
T ss_dssp             ECCSSCCCB
T ss_pred             ECCCCCCCe
Confidence            999865543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.00  E-value=0.14  Score=46.55  Aligned_cols=14  Identities=14%  Similarity=0.066  Sum_probs=8.8

Q ss_pred             CCCCCCCCceEEee
Q 019478          167 TLSNIKSLRSLCLD  180 (340)
Q Consensus       167 ~~~~~~~L~~L~L~  180 (340)
                      .+.+|++|+.+.|.
T Consensus       175 aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          175 IFYYCYNLKKADLS  188 (401)
T ss_dssp             TTTTCTTCCEEECT
T ss_pred             HhhCcccCCeeecC
Confidence            35566666666664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=91.98  E-value=0.0075  Score=59.50  Aligned_cols=100  Identities=15%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe---ccCCCcceEEEEecCCceEEEE---E
Q 019478          166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV---GSSVKLKYLDICYCYFMEEVEI---S  239 (340)
Q Consensus       166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~l~i---~  239 (340)
                      ..+..+++|+.|+|.++.+..  +..-+..+++|++|+|.++. ++  .++   ..+++|+.|.++++. ++.+.-   .
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~  291 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS  291 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred             hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence            344667778888777766541  11113357778888887774 22  122   134677777777765 443311   1


Q ss_pred             CCceeEEEEeccce---eeecCCCcccceEEEeec
Q 019478          240 APSVRSFKYYGPEI---KLRMENVPQLLDISIGGG  271 (340)
Q Consensus       240 ~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~  271 (340)
                      .++|+.|.++++..   +..++.+++|+.+.|..+
T Consensus       292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred             CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence            36778887776632   223667788888887665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=91.65  E-value=0.079  Score=41.81  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceE
Q 019478          241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKC  309 (340)
Q Consensus       241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~  309 (340)
                      ++|+.|.+.++...    ..++.+++|+.+.+....   +.......+.++++|+.|++.      ++ ..+..+++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ---IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc---ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence            45666666554321    124667888888886541   112223446689999999998      22 34567889999


Q ss_pred             EEEEcCCch
Q 019478          310 FRVVNNFLC  318 (340)
Q Consensus       310 L~l~~~~~~  318 (340)
                      |++.++.+.
T Consensus       105 L~l~~N~l~  113 (177)
T 2o6r_A          105 LALDTNQLK  113 (177)
T ss_dssp             EECCSSCCS
T ss_pred             EECcCCcce
Confidence            999985544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=88.71  E-value=0.24  Score=43.66  Aligned_cols=77  Identities=14%  Similarity=0.227  Sum_probs=45.6

Q ss_pred             ceeEEEEec-cce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEE
Q 019478          242 SVRSFKYYG-PEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCF  310 (340)
Q Consensus       242 ~L~~l~l~~-~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L  310 (340)
                      +|+.|++++ +..    .-.++++++|+.++|...   .+.......+.++++|+.|+|.      ++.......+|+.|
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l  108 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS---GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL  108 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS---CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCC---ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEE
Confidence            455555553 321    123667788888888654   2222333456788999999998      33322222249999


Q ss_pred             EEEcCCch-hhh
Q 019478          311 RVVNNFLC-FCL  321 (340)
Q Consensus       311 ~l~~~~~~-~c~  321 (340)
                      .+.++.+. .|.
T Consensus       109 ~l~~N~~~c~c~  120 (347)
T 2ifg_A          109 VLSGNPLHCSCA  120 (347)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EeeCCCccCCCc
Confidence            99986554 454

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=85.13  E-value=0.33  Score=43.68  Aligned_cols=31  Identities=13%  Similarity=0.119  Sum_probs=19.1

Q ss_pred             hccCCCcceEEEE-----c-ccCCcCCCcceEEEEEc
Q 019478          284 MSYFHQLETLELG-----F-VLNAVSILNLKCFRVVN  314 (340)
Q Consensus       284 l~~~~~L~~L~l~-----~-~~~~~~f~~L~~L~l~~  314 (340)
                      +.+|.+|+.+.+.     + ...+..+.+|+.+++-.
T Consensus       339 F~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          339 FRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred             ccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence            4566777776664     1 23455667777777754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=83.35  E-value=0.83  Score=38.83  Aligned_cols=54  Identities=19%  Similarity=0.124  Sum_probs=34.0

Q ss_pred             hhhccCCCcceEEEE---c--ccCCcCCC--cceEEEEEcCCchh----hhHHHHHHHHhccccc
Q 019478          282 PIMSYFHQLETLELG---F--VLNAVSIL--NLKCFRVVNNFLCF----CLILLLFLRKICNSHN  335 (340)
Q Consensus       282 ~ll~~~~~L~~L~l~---~--~~~~~~f~--~L~~L~l~~~~~~~----c~~l~~~~l~~cp~~~  335 (340)
                      .++..+++|+.|+|+   +  ...+..+.  +|++|.+.+|.+..    .+......++.+|+++
T Consensus       190 ~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~  254 (267)
T 3rw6_A          190 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLL  254 (267)
T ss_dssp             THHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCC
T ss_pred             hHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccC
Confidence            445577777777776   1  11233333  88888888876654    3355566788888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=80.43  E-value=0.71  Score=40.54  Aligned_cols=62  Identities=13%  Similarity=0.009  Sum_probs=44.7

Q ss_pred             cCCCcccceEEEee-ccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCchhhh
Q 019478          257 MENVPQLLDISIGG-GYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLCFCL  321 (340)
Q Consensus       257 ~~~~~~L~~l~l~~-~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~~c~  321 (340)
                      +....+|+.++|.. .   .+.......+.++++|+.|+|.       .+..+..+++|++|+|.+|.+...|
T Consensus        27 l~~~~~L~~L~l~~~n---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           27 LPGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             SCSCSCCSEEECCSCS---SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCCCCeeEEEccCCC---CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            56677889988863 3   2222233457799999999998       3456678999999999997666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=80.39  E-value=0.12  Score=44.03  Aligned_cols=37  Identities=22%  Similarity=0.187  Sum_probs=16.4

Q ss_pred             CCCCceEEeeeEEecH-HHHHHHHhcCccceEEeeeec
Q 019478          171 IKSLRSLCLDAVNVSG-EVLEFFIYSCPLLARLRVVFS  207 (340)
Q Consensus       171 ~~~L~~L~L~~~~i~~-~~l~~lls~cp~Le~L~L~~c  207 (340)
                      +|+|++|+|++..+.. +++..++..+|+|+.|+|.+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence            4455555555444332 123333344555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=80.38  E-value=0.75  Score=35.90  Aligned_cols=57  Identities=12%  Similarity=0.062  Sum_probs=39.6

Q ss_pred             CcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcCCchh
Q 019478          260 VPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       260 ~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      .++|+.+++...   .+.......+.++++|+.|+|.      ++ ..+..+++|++|++.++.+..
T Consensus        29 ~~~l~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~   92 (170)
T 3g39_A           29 PTTTQVLYLYDN---QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS   92 (170)
T ss_dssp             CTTCSEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcEEEcCCC---cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE
Confidence            477888887654   2122223456789999999998      33 345688999999999865543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.001
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.002

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 19 DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTFTTCL 61
          D I+ LP EI + I + L   +   +  +S  W  +   +T L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 19 DWISRLPDEILVNIISRLAVREAARTSVLSSRWKYL 54
          D+IS LP E+ + ++S L  ++  + +     W+ L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 22 SRLPDEILVNIISRLAVREAARTSVLSSRWKYL 54
            LPDE+L+ I S L + E  + S +  RW  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 19 DWISRLP----DEILVNIISRLAVREAARTSVLSSRWKYL 54
          D+I+ LP    D I  NI+S L  +      ++   W  +
Sbjct: 9  DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.09
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.85
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.72
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.7
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.36
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.49
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.27
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.08
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.12
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.02
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	95.54
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	95.31
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.3
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	94.86
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	94.64
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.38
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	92.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	92.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	91.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	91.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	81.52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1e-11  Score=73.09  Aligned_cols=36  Identities=36%  Similarity=0.552  Sum_probs=33.4

Q ss_pred             CCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 019478           21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT   56 (340)
Q Consensus        21 ~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~   56 (340)
                      ++.||+||+.+||+||+.+|+++++.|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999998654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.4e-12  Score=112.51  Aligned_cols=165  Identities=17%  Similarity=0.284  Sum_probs=108.2

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE---EEeccCCCcceEEEEecCCceEE------EE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL---KVVGSSVKLKYLDICYCYFMEEV------EI  238 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~~l------~i  238 (340)
                      +..+++|++|+|.++.+++..+.. +..+|+|++|++.+|.++++-   .+...+++|++|++++|..+.+-      ..
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~  145 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  145 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc
Confidence            467888888888888888777766 456888888888888777642   22335588999999888765431      12


Q ss_pred             ECCceeEEEEeccce-------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcC
Q 019478          239 SAPSVRSFKYYGPEI-------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVS  303 (340)
Q Consensus       239 ~~p~L~~l~l~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~  303 (340)
                      .+++|+.|.+.|+..       .....++|+|+++++..+.... +..+ ..+..+++|++|.+.        ....+..
T Consensus       146 ~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it-d~~~-~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-NDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-GGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccCCC-chhh-hhhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            258899998887521       1123568889988886542111 2222 334578899999987        1234567


Q ss_pred             CCcceEEEEEcCCchhhhHHHHHHHHhcccccccc
Q 019478          304 ILNLKCFRVVNNFLCFCLILLLFLRKICNSHNVSC  338 (340)
Q Consensus       304 f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~~~~~  338 (340)
                      +++|++|++.+....   .-...+.+.||++++.|
T Consensus       224 ~~~L~~L~l~~~~~d---~~l~~l~~~lp~L~i~~  255 (284)
T d2astb2         224 IPTLKTLQVFGIVPD---GTLQLLKEALPHLQINC  255 (284)
T ss_dssp             CTTCCEEECTTSSCT---TCHHHHHHHSTTSEESC
T ss_pred             CCCCCEEeeeCCCCH---HHHHHHHHhCccccccC
Confidence            788999988653211   11223457788876544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.3e-11  Score=101.10  Aligned_cols=41  Identities=24%  Similarity=0.379  Sum_probs=21.3

Q ss_pred             CCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCc
Q 019478          170 NIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDL  210 (340)
Q Consensus       170 ~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~  210 (340)
                      .+++|++|+|.++. ++++++..++.+||+|++|++.+|..+
T Consensus        93 ~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~  134 (284)
T d2astb2          93 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  134 (284)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             cCCCCcCccccccccccccccchhhHHHHhcccccccccccc
Confidence            34555555555543 555555555555555555555555443

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.5e-09  Score=75.96  Aligned_cols=40  Identities=25%  Similarity=0.439  Sum_probs=36.8

Q ss_pred             ccCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 019478           16 ILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLW   55 (340)
Q Consensus        16 ~~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw   55 (340)
                      -..|.++.||+||+.+||+||+.+|+++++.|||+|+.+.
T Consensus        14 ~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             hccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3478899999999999999999999999999999999753

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.1e-09  Score=78.34  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=35.2

Q ss_pred             CCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 019478           18 VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLW   55 (340)
Q Consensus        18 ~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw   55 (340)
                      .|-++.||+||+.+||+||+.+|++++++|||+|+++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   40 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999998754

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.8e-08  Score=71.77  Aligned_cols=38  Identities=29%  Similarity=0.533  Sum_probs=34.3

Q ss_pred             cCCcCCCCC----hHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 019478           17 LVDWISRLP----DEILVNIISRLAVREAARTSVLSSRWKYL   54 (340)
Q Consensus        17 ~~d~~s~LP----d~il~~Ils~L~~~d~~r~~~vsk~W~~l   54 (340)
                      ..|.++.||    |||+.+||+||+.+|+++++.|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            457788888    59999999999999999999999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.8e-06  Score=72.56  Aligned_cols=146  Identities=17%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE----ECCce
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI----SAPSV  243 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i----~~p~L  243 (340)
                      +.++++|++|+|.+..++.  +.. .+..++|+.|++.++.-..........++|+.|.+.++. +..+..    ..+++
T Consensus        51 f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l  126 (266)
T d1p9ag_          51 LMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL  126 (266)
T ss_dssp             GTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred             hhccccccccccccccccc--ccc-ccccccccccccccccccccccccccccccccccccccc-cceeecccccccccc
Confidence            3455555555555443321  110 123455555555554311111111222455555555443 211111    12555


Q ss_pred             eEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEE
Q 019478          244 RSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVV  313 (340)
Q Consensus       244 ~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~  313 (340)
                      +.+.+.+....    ..+..++.++.+.+...   .+.......+.++++|+.|+|.      +|+.+..+.+|+.|.+.
T Consensus       127 ~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N---~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANN---NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTS---CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             ccccccccccceeccccccccccchhcccccc---cccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEec
Confidence            55555544321    12344566666666433   1122233456789999999998      66777788899999999


Q ss_pred             cCCch-hh
Q 019478          314 NNFLC-FC  320 (340)
Q Consensus       314 ~~~~~-~c  320 (340)
                      +|... .|
T Consensus       204 ~Np~~CdC  211 (266)
T d1p9ag_         204 GNPWLCNC  211 (266)
T ss_dssp             SCCBCCSG
T ss_pred             CCCCCCCc
Confidence            86443 45

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.78  E-value=1.8e-06  Score=69.83  Aligned_cols=137  Identities=15%  Similarity=0.176  Sum_probs=87.9

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRS  245 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~  245 (340)
                      ...+++|++|+|.++.+++  +.. ++.+++|+.|++.++. ++.+.--..+++|+.|.+.++. ...+.  ...++++.
T Consensus        64 l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~l~~  138 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES  138 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCE
T ss_pred             HhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            3678999999999887754  222 4678999999999874 3332111234788889888776 22221  12477888


Q ss_pred             EEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc--cCCcCCCcceEEEEEc
Q 019478          246 FKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV--LNAVSILNLKCFRVVN  314 (340)
Q Consensus       246 l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~--~~~~~f~~L~~L~l~~  314 (340)
                      +.+.+....  .....+++|+.+.+....-..    +. -+.++++|+.|++.   +.  ..+..+++|++|++.+
T Consensus       139 l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~----i~-~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISD----IV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCC----CG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccc----cc-cccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence            887766431  224557788887776541111    11 15688899999987   11  2366778889988863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.77  E-value=1.7e-06  Score=69.40  Aligned_cols=134  Identities=8%  Similarity=0.120  Sum_probs=78.7

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE-ECCceeEE
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI-SAPSVRSF  246 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i-~~p~L~~l  246 (340)
                      ...+++|++|+|+++.+++-  .. +.++++|+.|++.++.... +.--..+++|+.|.+.++.......+ ..++|+.+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  133 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  133 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cccCCCcCcCccccccccCc--cc-ccCCccccccccccccccc-ccccccccccccccccccccccccccchhhhhHHh
Confidence            35789999999988877542  11 6788999999998885322 11112447888888887762211011 24777777


Q ss_pred             EEecccee-e-ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc--cCCcCCCcceEE
Q 019478          247 KYYGPEIK-L-RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV--LNAVSILNLKCF  310 (340)
Q Consensus       247 ~l~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~--~~~~~f~~L~~L  310 (340)
                      .++++... + .+..+++|+.+.+....-..    + .-+.++++|+.|++.   +.  ..+..+++|++|
T Consensus       134 ~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~----l-~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISDISALSGLTSLQQLNFSSNQVTD----L-KPLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCC----C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             hhhhhhhcccccccccccccccccccccccC----C-ccccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence            77766432 1 24566777777665431111    1 114567777777776   11  124455566554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.72  E-value=1.6e-06  Score=69.40  Aligned_cols=143  Identities=10%  Similarity=0.174  Sum_probs=98.4

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE-E-ECCceeEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-I-SAPSVRSF  246 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~l  246 (340)
                      ..+++|++|++.+..+.+  ++. ++.+++|++|++.++. ++.+.--..+++|+.|.+.++. +..+. + ..++|+.+
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l~~-l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCC--ccc-cccCCCcCcCcccccc-ccCcccccCCcccccccccccc-cccccccccccccccc
Confidence            357899999998877654  211 4679999999999984 4432212345899999999876 33322 1 35889999


Q ss_pred             EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---c--ccCCcCCCcceEEEEEcCCchh
Q 019478          247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---F--VLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~--~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      .+.++...  -.+..+++|+.+.+....-..    + ..+.++++++.|.+.   +  ...+..+++|++|++.++.+..
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~-~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISD----I-SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCC----C-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhcc----c-ccccccccccccccccccccCCccccCCCCCCEEECCCCCCCC
Confidence            99877542  236678999998886541111    1 235689999999997   1  1236788999999999866554


Q ss_pred             hh
Q 019478          320 CL  321 (340)
Q Consensus       320 c~  321 (340)
                      .+
T Consensus       187 i~  188 (199)
T d2omxa2         187 IS  188 (199)
T ss_dssp             CG
T ss_pred             Cc
Confidence            33

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.2e-06  Score=73.53  Aligned_cols=144  Identities=17%  Similarity=0.115  Sum_probs=96.9

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE---EECCceeEEEE
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE---ISAPSVRSFKY  248 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~---i~~p~L~~l~l  248 (340)
                      ++|++|+|.+..++.=. ...+.++++|++|+|.++. ++.+......++|+.|.++++. +..+.   ...++|+.+.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-cccccccccccccccccccccc-ccccccccccccccccccc
Confidence            57999999887654210 1124678999999999984 5555444466899999999876 43321   12488999998


Q ss_pred             eccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCc
Q 019478          249 YGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFL  317 (340)
Q Consensus       249 ~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~  317 (340)
                      ++...    ...+..+.+++.+.+...   .+.......+..+++++.|++.       .+..+..+++|++|++.++.+
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n---~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTS---CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccceeecccccccccccccccccc---ccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence            87643    223456777888777544   1112233456688899999988       234467788999999998665


Q ss_pred             hhhh
Q 019478          318 CFCL  321 (340)
Q Consensus       318 ~~c~  321 (340)
                      ..-|
T Consensus       185 ~~lp  188 (266)
T d1p9ag_         185 YTIP  188 (266)
T ss_dssp             CCCC
T ss_pred             cccC
Confidence            5433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.5e-06  Score=67.34  Aligned_cols=99  Identities=12%  Similarity=0.035  Sum_probs=62.0

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE----ECCcee
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI----SAPSVR  244 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i----~~p~L~  244 (340)
                      .+..+|+.|+|.+..++.  ++.+..++++|+.|+++++. +..+.--..+++|+.|.++++. ++.+.-    ..|+|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            466788889988877643  23345678889999999874 4443211344788888888886 555532    246777


Q ss_pred             EEEEecccee-----eecCCCcccceEEEeec
Q 019478          245 SFKYYGPEIK-----LRMENVPQLLDISIGGG  271 (340)
Q Consensus       245 ~l~l~~~~~~-----~~~~~~~~L~~l~l~~~  271 (340)
                      .|.+.++...     ..+..+++|+.+.+..+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             cceeccccccccccccccccccccchhhcCCC
Confidence            7777665321     12345566666666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.63  E-value=1.4e-05  Score=65.11  Aligned_cols=37  Identities=11%  Similarity=0.071  Sum_probs=19.8

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL  208 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~  208 (340)
                      ..+++|++|++.++.+.+-  .. +..+++|+.+.+.++.
T Consensus        60 ~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNP   96 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCC
T ss_pred             hcCCCCcEeecCCceeecc--cc-cccccccccccccccc
Confidence            4566666666665554321  11 4556666666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.6e-05  Score=61.27  Aligned_cols=119  Identities=8%  Similarity=-0.026  Sum_probs=63.4

Q ss_pred             hcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEeecc
Q 019478          194 YSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGY  272 (340)
Q Consensus       194 s~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~  272 (340)
                      .++..|++|+|.++. ++.+ .+...+++|+.|.++++. +++++-                  +..+++|+.+.+..+.
T Consensus        15 ~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~------------------~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          15 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLDG------------------FPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEECC------------------CCCCSSCCEEECCSSC
T ss_pred             cCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCC-CCccCC------------------cccCcchhhhhccccc
Confidence            346778888888875 3332 122344678888887775 544421                  2334444444443331


Q ss_pred             CchhhhhhhhhhccCCCcceEEEE------cc--cCCcCCCcceEEEEEcCCchhhhHHHHHHHHhccccc
Q 019478          273 GVRMKHAISPIMSYFHQLETLELG------FV--LNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHN  335 (340)
Q Consensus       273 ~~~~~~~~~~ll~~~~~L~~L~l~------~~--~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~~  335 (340)
                      -.   .....++.++++|+.|++.      ++  ..+..+++|++|.+.++.+...+......+..||+++
T Consensus        75 i~---~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          75 IC---RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             CC---EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             cc---CCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcC
Confidence            10   0111223455566666655      12  2344566777777776666555655555666677653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.49  E-value=2e-06  Score=69.55  Aligned_cols=152  Identities=14%  Similarity=0.177  Sum_probs=101.4

Q ss_pred             CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE-E-ECCceeEEE
Q 019478          170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-I-SAPSVRSFK  247 (340)
Q Consensus       170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~l~  247 (340)
                      .+.+|+.|.+.++.+.+-  .. +..+++|++|++.++. ++.+.-...+++|+.|.+.++. ++++. + ..|+|+.+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~-l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCc--hh-HhhCCCCCEEeCCCcc-ccCccccccCcccccccccccc-ccccccccccccccccc
Confidence            467899999988776541  11 5679999999999984 3332212345899999999886 55442 1 248999999


Q ss_pred             Eecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc--cCCcCCCcceEEEEEcCCchhh
Q 019478          248 YYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV--LNAVSILNLKCFRVVNNFLCFC  320 (340)
Q Consensus       248 l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~--~~~~~f~~L~~L~l~~~~~~~c  320 (340)
                      +.++...  -.+..++.++.+.+....-..     ......+++|+.+.+.   +.  ..+..+++|++|++.++.+...
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~-----~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred             cccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccCCCCCCEEECCCCCCCCC
Confidence            9877432  135567778877776541111     1235578999999998   21  2356788999999998766554


Q ss_pred             hHHHHHHHHhcccccc
Q 019478          321 LILLLFLRKICNSHNV  336 (340)
Q Consensus       321 ~~l~~~~l~~cp~~~~  336 (340)
                      +.     +..+++++.
T Consensus       194 ~~-----l~~l~~L~~  204 (210)
T d1h6ta2         194 RA-----LAGLKNLDV  204 (210)
T ss_dssp             GG-----GTTCTTCSE
T ss_pred             hh-----hcCCCCCCE
Confidence            42     455565543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.27  E-value=5.5e-05  Score=64.26  Aligned_cols=95  Identities=15%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             CCcceEEEEecCCceEEEE-ECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEE
Q 019478          220 VKLKYLDICYCYFMEEVEI-SAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLE  294 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~l~i-~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  294 (340)
                      ++|+.+.+.++. +..+.. ..++|+.|.+.+...    ...+..++.++.+.+....   +.......+.++++|+.|+
T Consensus       150 ~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~---l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         150 KKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS---ISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             TTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC---CCEECTTTGGGSTTCCEEE
T ss_pred             cccCccccccCC-ccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccc---ccccccccccccccceeee
Confidence            344555554443 222211 136666766665532    1234555666666554331   1112234456788888888


Q ss_pred             EE------cccCCcCCCcceEEEEEcCCch
Q 019478          295 LG------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       295 l~------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      |.      +|..+..+++|++|++..+.+.
T Consensus       226 L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         226 LNNNKLVKVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccccccccccCCCEEECCCCccC
Confidence            77      5566777788888888774443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.08  E-value=1.7e-05  Score=64.55  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=79.2

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeEE
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSF  246 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l  246 (340)
                      ..+.+|+.|++.++.+.+  +.. ++.+++|+.|++.++. ++.+.--..+++|+.|.+.++. ++++.  -..++|+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~--l~~-l~~l~~L~~L~ls~n~-i~~~~~l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT--IEG-VQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCc--chh-HhcCCCCcEeecCCce-eecccccccccccccccccccc-cccccccccccccccc
Confidence            467899999999887653  322 5789999999999985 3222111344677777777664 33321  124666666


Q ss_pred             EEecccee------------------------eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc-
Q 019478          247 KYYGPEIK------------------------LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV-  298 (340)
Q Consensus       247 ~l~~~~~~------------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~-  298 (340)
                      .+.++...                        ..+..+++|+++.+....-..    . .-+.++++|+.|++.   +. 
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~-~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD----L-TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----C-GGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc----c-hhhcccccceecccCCCccCC
Confidence            66544211                        112334445555443321100    0 114567777777776   11 


Q ss_pred             -cCCcCCCcceEEEEEcCCch
Q 019478          299 -LNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       299 -~~~~~f~~L~~L~l~~~~~~  318 (340)
                       ..+..+++|++|++.++.+.
T Consensus       188 l~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         188 ISPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CGGGGGCTTCCEEECTTSCCC
T ss_pred             ChhhcCCCCCCEEECcCCcCC
Confidence             12456677777777765444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=4.4e-05  Score=64.24  Aligned_cols=125  Identities=14%  Similarity=0.026  Sum_probs=72.4

Q ss_pred             HhcCccceEEeeeecCCcce-EEEeccCCCcceEEEEecCCceEEEE----ECCceeEEEEecccee----eecCCCccc
Q 019478          193 IYSCPLLARLRVVFSLDLLS-LKVVGSSVKLKYLDICYCYFMEEVEI----SAPSVRSFKYYGPEIK----LRMENVPQL  263 (340)
Q Consensus       193 ls~cp~Le~L~L~~c~~~~~-l~i~~~~~~L~~L~l~~c~~l~~l~i----~~p~L~~l~l~~~~~~----~~~~~~~~L  263 (340)
                      ++++++|++|++.++..... ........+|+.+.+.+.. ++.+.-    ..++|+.|.++++...    -.+.++++|
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            34566677776666642110 0011123566666666554 444321    2477888888776432    234567777


Q ss_pred             ceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCch-hhh
Q 019478          264 LDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLC-FCL  321 (340)
Q Consensus       264 ~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~-~c~  321 (340)
                      +.+.+....-   .......+.++++|+.|++.       .+..+..+++|++|++.++... .|+
T Consensus       180 ~~l~l~~N~l---~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         180 DRLLLHQNRV---AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             chhhhhhccc---cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            7777654411   11223456788889999988       2345667888999999885433 465

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.84  E-value=7.6e-05  Score=65.18  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=23.0

Q ss_pred             hccCCCcceEEEE-----cccCCcCCCcceEEEEEcCCchhh
Q 019478          284 MSYFHQLETLELG-----FVLNAVSILNLKCFRVVNNFLCFC  320 (340)
Q Consensus       284 l~~~~~L~~L~l~-----~~~~~~~f~~L~~L~l~~~~~~~c  320 (340)
                      +..+++|+.|++.     ....+..+++|++|++.++.+...
T Consensus       325 l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBC
T ss_pred             cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCC
Confidence            4567777777776     112355667777777777554443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.68  E-value=2e-05  Score=62.80  Aligned_cols=99  Identities=18%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEE--EECCcee
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVE--ISAPSVR  244 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~  244 (340)
                      +..+++|+.|+|.+..+.+  +.. +..+++|+.|++.++. ++.+ .+....++|+.|.+.++. ++++.  ...++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHSS
T ss_pred             HhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-ccccccccccccccccccccccc-cccccccccccccc
Confidence            3568899999999888764  222 5678899999999884 2221 111122567888887764 44331  1136777


Q ss_pred             EEEEecccee-----eecCCCcccceEEEeec
Q 019478          245 SFKYYGPEIK-----LRMENVPQLLDISIGGG  271 (340)
Q Consensus       245 ~l~l~~~~~~-----~~~~~~~~L~~l~l~~~  271 (340)
                      .|+++++...     -.+..+++|+.+++...
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccchhccccccccccCCCccceeecCCC
Confidence            7777765321     12466777777777643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.00011  Score=53.63  Aligned_cols=60  Identities=18%  Similarity=0.142  Sum_probs=35.3

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEec
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYC  230 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c  230 (340)
                      +..+++|++|++.+..+.+  +..-++.+++|+.|++.+.. ++.+.--..+++|++|.++++
T Consensus        16 l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred             cccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc-ccccCccccccccCeEECCCC
Confidence            4678888888888877643  22225678888888888864 332210112245555555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.61  E-value=0.00011  Score=64.21  Aligned_cols=137  Identities=12%  Similarity=0.166  Sum_probs=83.1

Q ss_pred             CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCC----------------
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYF----------------  232 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~----------------  232 (340)
                      ..+++|+.|++.++.+.+-  . -+..++.|+.|++.++. ++.+.--..+++|+.|.+.++..                
T Consensus       216 ~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~  291 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE  291 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCc-cCCCCcccccccCCEeeccCcccCCCCcccccccccccc
Confidence            4567888888877765442  1 14567788888877764 22211112335666666655431                


Q ss_pred             -----ceEEE--EECCceeEEEEecccee-e-ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---ccc-
Q 019478          233 -----MEEVE--ISAPSVRSFKYYGPEIK-L-RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FVL-  299 (340)
Q Consensus       233 -----l~~l~--i~~p~L~~l~l~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~~-  299 (340)
                           ++.+.  ...++++.++++++... + .+..+++|+++.+..+.-..    +. .+.++++|+.|++.   +.. 
T Consensus       292 ~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~----l~-~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD----VS-SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             CCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC----CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred             ccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC----Ch-hHcCCCCCCEEECCCCcCCCC
Confidence                 11110  11377888888776432 1 36788999999987652111    11 35689999999998   221 


Q ss_pred             -CCcCCCcceEEEEEc
Q 019478          300 -NAVSILNLKCFRVVN  314 (340)
Q Consensus       300 -~~~~f~~L~~L~l~~  314 (340)
                       .+..+++|+.|+|.+
T Consensus       367 ~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         367 TPLANLTRITQLGLND  382 (384)
T ss_dssp             GGGTTCTTCSEEECCC
T ss_pred             hhhccCCCCCEeeCCC
Confidence             256788999998865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.53  E-value=0.00035  Score=60.15  Aligned_cols=60  Identities=17%  Similarity=0.219  Sum_probs=32.6

Q ss_pred             CCcccceEEEeecc--CchhhhhhhhhhccCCCcceEEEE-----------cccCCcCCCcceEEEEEcCCch
Q 019478          259 NVPQLLDISIGGGY--GVRMKHAISPIMSYFHQLETLELG-----------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       259 ~~~~L~~l~l~~~~--~~~~~~~~~~ll~~~~~L~~L~l~-----------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      ..+.|+++.+..+.  .......+...+..+++|+.|++.           +...+..+++|++|.+.++.+.
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            34566666665441  111122344556667777777776           1233456667777777665443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00059  Score=55.41  Aligned_cols=65  Identities=18%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecC
Q 019478          167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCY  231 (340)
Q Consensus       167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~  231 (340)
                      .+.++++|++|+|.+..+.+.--...+.+++.+++|.+..+..+......  ..+++|++|.+.++.
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh
Confidence            34677778887777653221100001345677777777766554432111  133677777776654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.39  E-value=0.00037  Score=59.16  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=27.5

Q ss_pred             hccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCch
Q 019478          284 MSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       284 l~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      +..+++++.|++.       +|..+..+++|++|++.++.+.
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            4567889999987       6677888899999999885444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0035  Score=50.53  Aligned_cols=79  Identities=9%  Similarity=0.002  Sum_probs=54.8

Q ss_pred             CCCceEEeeeEEecHHHHH-HHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEE----EECCcee
Q 019478          172 KSLRSLCLDAVNVSGEVLE-FFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVE----ISAPSVR  244 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~-~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~----i~~p~L~  244 (340)
                      +++++|+|.+..+..  +. ..+.++++|++|++.++.....+...  ...+++++|.+..+..+..+.    -..|+|+
T Consensus        29 ~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            589999999876532  11 12567999999999998644332111  134788999988877666544    3368999


Q ss_pred             EEEEeccc
Q 019478          245 SFKYYGPE  252 (340)
Q Consensus       245 ~l~l~~~~  252 (340)
                      .+.+.+..
T Consensus       107 ~l~l~~~~  114 (242)
T d1xwdc1         107 YLLISNTG  114 (242)
T ss_dssp             EEEEESCC
T ss_pred             ccccchhh
Confidence            99998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.02  E-value=5.2e-05  Score=65.64  Aligned_cols=166  Identities=13%  Similarity=0.025  Sum_probs=104.9

Q ss_pred             CCCCCCceEEeeeEEecHHH---HHHHHhcCccceEEeeeecCCcc-----------eEE---EeccCCCcceEEEEecC
Q 019478          169 SNIKSLRSLCLDAVNVSGEV---LEFFIYSCPLLARLRVVFSLDLL-----------SLK---VVGSSVKLKYLDICYCY  231 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~---l~~lls~cp~Le~L~L~~c~~~~-----------~l~---i~~~~~~L~~L~l~~c~  231 (340)
                      ..+++|+.|+|.++.+++.+   +...+..++.|+.|++.+|.--.           .+.   .....+.|+.|.+.+..
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            46789999999999887764   44556679999999999885210           000   01123678888887654


Q ss_pred             CceE-----E---EEECCceeEEEEecccee---------eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceE
Q 019478          232 FMEE-----V---EISAPSVRSFKYYGPEIK---------LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETL  293 (340)
Q Consensus       232 ~l~~-----l---~i~~p~L~~l~l~~~~~~---------~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L  293 (340)
                       ++.     +   --..++|+.|.+..+...         -.+...++|+.+++.... +......+...+..+++|++|
T Consensus       170 -i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         170 -LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             -CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             -ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence             221     1   112578999998866321         124567889998887551 111123455678899999999


Q ss_pred             EEE-----------cccCCc--CCCcceEEEEEcCCchh--hhHHHHHHHHhccccc
Q 019478          294 ELG-----------FVLNAV--SILNLKCFRVVNNFLCF--CLILLLFLRKICNSHN  335 (340)
Q Consensus       294 ~l~-----------~~~~~~--~f~~L~~L~l~~~~~~~--c~~l~~~~l~~cp~~~  335 (340)
                      .+.           +.+.+.  ....|++|++.++.+..  ...+...+...+|+++
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~  305 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  305 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCC
Confidence            987           112222  35689999999976543  2333333334677654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.56  E-value=0.00054  Score=53.72  Aligned_cols=99  Identities=11%  Similarity=0.123  Sum_probs=56.7

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEEE----CCceeEE
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEIS----APSVRSF  246 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i~----~p~L~~l  246 (340)
                      +++++|+|.+..++...-...+.+.++|+.|++.+..-.... ..-...++|+.|.+++.. ++.+.-.    .++|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCccccc
Confidence            578888888877643111122456788888888876421110 001123677777777765 5554322    3667777


Q ss_pred             EEecccee----eecCCCcccceEEEeec
Q 019478          247 KYYGPEIK----LRMENVPQLLDISIGGG  271 (340)
Q Consensus       247 ~l~~~~~~----~~~~~~~~L~~l~l~~~  271 (340)
                      ++.+....    -.+..+++|+++.+...
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccCCccccccCHHHhcCCccccccccccc
Confidence            76666432    12455667777666544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.00072  Score=56.44  Aligned_cols=123  Identities=13%  Similarity=0.061  Sum_probs=48.9

Q ss_pred             CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEEE----CC
Q 019478          168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEIS----AP  241 (340)
Q Consensus       168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i~----~p  241 (340)
                      +.++++|++|++.+..+..-. ......++.|+.+++.+.. ++.+.-  -...++|++|.+.++. ++.+.-.    .+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~  177 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLH  177 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred             hcccccCCEEecCCccccccc-ccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCc-ccccchhhhcccc
Confidence            445555555555544332100 1112334455555555442 111100  0122455555555543 3333211    24


Q ss_pred             ceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478          242 SVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG  296 (340)
Q Consensus       242 ~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~  296 (340)
                      +|+.+.+.++..    +-.++++++|+.+.+....-   .......+.++++|+.|++.
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i---~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL---SALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---SCCCHHHHTTCTTCCEEECC
T ss_pred             ccchhhhhhccccccChhHhhhhhhccccccccccc---ccccccccccccccCEEEec
Confidence            555555544321    11234445555555443311   11112233455555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=95.31  E-value=0.00016  Score=57.33  Aligned_cols=76  Identities=11%  Similarity=0.120  Sum_probs=43.2

Q ss_pred             HhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE---EECCceeEEEEeccceee--ecCCCcccceEE
Q 019478          193 IYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE---ISAPSVRSFKYYGPEIKL--RMENVPQLLDIS  267 (340)
Q Consensus       193 ls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~---i~~p~L~~l~l~~~~~~~--~~~~~~~L~~l~  267 (340)
                      ++..++|++|+|.++. ++.+.--..+++|+.|.++++. ++++.   -..++|+.|.+.++...-  .+..+++|+.++
T Consensus        44 l~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          44 LSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred             HhcccccceeECcccC-CCCcccccCCccccChhhcccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            6678899999999884 3332111234788889888875 44331   112456666665553211  123345555555


Q ss_pred             Eee
Q 019478          268 IGG  270 (340)
Q Consensus       268 l~~  270 (340)
                      +..
T Consensus       122 L~~  124 (198)
T d1m9la_         122 MSN  124 (198)
T ss_dssp             ESE
T ss_pred             ccc
Confidence            543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.00056  Score=60.61  Aligned_cols=98  Identities=10%  Similarity=0.112  Sum_probs=67.6

Q ss_pred             CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE---Ee---ccCCCcceEEEEecCCceEE---------
Q 019478          172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK---VV---GSSVKLKYLDICYCYFMEEV---------  236 (340)
Q Consensus       172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~---i~---~~~~~L~~L~l~~c~~l~~l---------  236 (340)
                      ++|++|++.+..+++.++.+++..+++|++|+|.+|. ++...   +.   ..+++|++|+++++. +++.         
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHH
Confidence            5789999998889999999999999999999999995 44211   11   244788999888775 3321         


Q ss_pred             EEECCceeEEEEecccee--------eecCCCcccceEEEeec
Q 019478          237 EISAPSVRSFKYYGPEIK--------LRMENVPQLLDISIGGG  271 (340)
Q Consensus       237 ~i~~p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~  271 (340)
                      ....++|++|+++++...        -.+..+++|+++.+...
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            112357888888766321        12456777887777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.86  E-value=0.004  Score=48.47  Aligned_cols=95  Identities=14%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             CCcceEEEEecCCceE-EEE----ECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCc
Q 019478          220 VKLKYLDICYCYFMEE-VEI----SAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQL  290 (340)
Q Consensus       220 ~~L~~L~l~~c~~l~~-l~i----~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L  290 (340)
                      +++++|.+++.. +.. +..    ..++|+.|.+.+...    .-.+...++|+++++...   .+.......+.++++|
T Consensus        29 ~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N---~l~~l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN---KIKEISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC---CCCEECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc---cccccCHHHHhCCCcc
Confidence            456666666654 321 111    136777777766533    223556778888877654   1122223456788999


Q ss_pred             ceEEEE------c-ccCCcCCCcceEEEEEcCCch
Q 019478          291 ETLELG------F-VLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       291 ~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      +.|+|.      + +..+..+++|++|.+.++...
T Consensus       105 ~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCCccccccCHHHhcCCcccccccccccccc
Confidence            999988      2 445678889999999886543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.64  E-value=0.0055  Score=44.05  Aligned_cols=50  Identities=22%  Similarity=0.099  Sum_probs=25.3

Q ss_pred             ccCCCcceEEEE------cc--cCCcCCCcceEEEEEcCCchhhhHHHHHHHHhcccc
Q 019478          285 SYFHQLETLELG------FV--LNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSH  334 (340)
Q Consensus       285 ~~~~~L~~L~l~------~~--~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~  334 (340)
                      ..+++|+.|++.      ++  ..+..+++|+.|++.++.+...+.......+..|++
T Consensus        62 ~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L  119 (124)
T d1dcea3          62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  119 (124)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             ccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCc
Confidence            355555555555      11  224455566666666655444444444445555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0067  Score=45.53  Aligned_cols=59  Identities=17%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCch
Q 019478          257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLC  318 (340)
Q Consensus       257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~  318 (340)
                      +.++++|+.+++...   .+...-...+.++++|+.|+|.      ++.......+|++|.|.++...
T Consensus        52 f~~l~~L~~L~Ls~N---~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          52 LRGLGELRNLTIVKS---GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCCSEEECCSS---CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             hccccccCcceeecc---ccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            556777777777544   1222223446688889999887      4444444457999999986553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.40  E-value=0.0024  Score=48.73  Aligned_cols=40  Identities=10%  Similarity=0.213  Sum_probs=27.3

Q ss_pred             CCCCCCceEEeeeEE-ecHHHHHHH---HhcCccceEEeeeecC
Q 019478          169 SNIKSLRSLCLDAVN-VSGEVLEFF---IYSCPLLARLRVVFSL  208 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~-i~~~~l~~l---ls~cp~Le~L~L~~c~  208 (340)
                      .+.|+|++|+|.++. ++++++..+   +..++.|++|+|.+|.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~   55 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA   55 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc
Confidence            356778888887654 777665443   4557778888887774

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.65  E-value=0.0029  Score=48.07  Aligned_cols=40  Identities=13%  Similarity=0.147  Sum_probs=30.3

Q ss_pred             CCCCCCceEEeeeEE-ecHHHHHHHH---hcCccceEEeeeecC
Q 019478          169 SNIKSLRSLCLDAVN-VSGEVLEFFI---YSCPLLARLRVVFSL  208 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~-i~~~~l~~ll---s~cp~Le~L~L~~c~  208 (340)
                      .+.|+|++|+|.++. ++++++..+.   ..++.|++|++.+|.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~   57 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   57 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc
Confidence            466889999998754 8887765554   467889999998884

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.38  E-value=0.019  Score=48.33  Aligned_cols=55  Identities=20%  Similarity=0.136  Sum_probs=24.9

Q ss_pred             CCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cccCCcCCCcceEEEEEcCCchh
Q 019478          258 ENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FVLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       258 ~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      ..+++|+++++..+       .+..+...+++|+.|++.   +........+|++|++.++.+..
T Consensus       281 ~~~~~L~~L~Ls~N-------~l~~lp~~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         281 DLPPSLEELNVSNN-------KLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CCCTTCCEEECCSS-------CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred             ccCCCCCEEECCCC-------ccCccccccCCCCEEECCCCcCCccccccCCCCEEECcCCcCCC
Confidence            33455555555432       122233345556666555   22222233456666665544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.74  E-value=0.0087  Score=49.96  Aligned_cols=56  Identities=11%  Similarity=0.113  Sum_probs=26.9

Q ss_pred             CCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-------cCCcCCCcceEEEEEcCCc
Q 019478          258 ENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-------LNAVSILNLKCFRVVNNFL  317 (340)
Q Consensus       258 ~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-------~~~~~f~~L~~L~l~~~~~  317 (340)
                      .++++|+++++....-..    +..-+..+++|+.|++.      ++       .......+|+.|.+.++..
T Consensus       216 ~~l~~L~~L~L~~N~L~~----lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLVK----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             GGSTTCCEEECCSSCCSS----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccceeeecccccccc----cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            445566666554331001    11223456666666665      11       1223445677777766543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.0048  Score=54.29  Aligned_cols=81  Identities=16%  Similarity=0.197  Sum_probs=57.6

Q ss_pred             CCCCCCceEEeeeEEecHHHHHH---HHhcCccceEEeeeecCCcceE---EE----eccCCCcceEEEEecCCceEEE-
Q 019478          169 SNIKSLRSLCLDAVNVSGEVLEF---FIYSCPLLARLRVVFSLDLLSL---KV----VGSSVKLKYLDICYCYFMEEVE-  237 (340)
Q Consensus       169 ~~~~~L~~L~L~~~~i~~~~l~~---lls~cp~Le~L~L~~c~~~~~l---~i----~~~~~~L~~L~l~~c~~l~~l~-  237 (340)
                      ..+++|++|+|.++.+++++++.   .+..+|+|++|+|.++. ++..   .+    .....+|++|.+.+|. +++.. 
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~  101 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGC  101 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCC-cccccc
Confidence            46789999999999999876554   45789999999998874 3321   11    1122579999999886 54321 


Q ss_pred             -------EECCceeEEEEecc
Q 019478          238 -------ISAPSVRSFKYYGP  251 (340)
Q Consensus       238 -------i~~p~L~~l~l~~~  251 (340)
                             ...++|++|.+.++
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSS
T ss_pred             ccccchhhccccccccccccc
Confidence                   13588999998765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=91.69  E-value=0.034  Score=46.73  Aligned_cols=53  Identities=11%  Similarity=0.026  Sum_probs=34.0

Q ss_pred             cCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEeec
Q 019478          218 SSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGG  271 (340)
Q Consensus       218 ~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~~~  271 (340)
                      ..++|++|.+++|. ++.+.-..|+|+.|.+.++...-....+++|+++++..+
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N  334 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYN  334 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCc-cCccccccCCCCEEECCCCcCCccccccCCCCEEECcCC
Confidence            34678888888875 555544457888888877643322334567887777543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=91.23  E-value=0.096  Score=43.41  Aligned_cols=114  Identities=10%  Similarity=0.054  Sum_probs=69.2

Q ss_pred             cceEEeeeecCCcceEEEec---cCCCcceEEEEecCCce-EEE--E-ECCceeEEEEecccee----eecCCCcccceE
Q 019478          198 LLARLRVVFSLDLLSLKVVG---SSVKLKYLDICYCYFME-EVE--I-SAPSVRSFKYYGPEIK----LRMENVPQLLDI  266 (340)
Q Consensus       198 ~Le~L~L~~c~~~~~l~i~~---~~~~L~~L~l~~c~~l~-~l~--i-~~p~L~~l~l~~~~~~----~~~~~~~~L~~l  266 (340)
                      +++.|+|.++.-.....++.   ..++|++|.+++|..+. .+.  + ..++|++|+++++...    ..+...+.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            68889998875433334443   44788888998765454 231  1 2478888888877432    224556777777


Q ss_pred             EEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcc-eEEEEEc
Q 019478          267 SIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNL-KCFRVVN  314 (340)
Q Consensus       267 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L-~~L~l~~  314 (340)
                      .+....   ....+...+.++++++.+.+.       +|..+..+.++ +.+.+..
T Consensus       131 ~l~~N~---~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~  183 (313)
T d1ogqa_         131 DFSYNA---LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             ECCSSE---EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             cccccc---ccccCchhhccCcccceeecccccccccccccccccccccccccccc
Confidence            665431   111233445688888888876       45555556554 6666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.52  E-value=0.31  Score=35.77  Aligned_cols=61  Identities=13%  Similarity=0.032  Sum_probs=40.2

Q ss_pred             cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEEcCCchh
Q 019478          257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVVNNFLCF  319 (340)
Q Consensus       257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~~  319 (340)
                      +...++|+++++....  .+...-...+.++++|+.|++.      + +..+..+++|++|++.++.+..
T Consensus        27 l~~l~~l~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~   94 (156)
T d2ifga3          27 LPGAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES   94 (156)
T ss_dssp             SCSCSCCSEEECCSCS--SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred             ccCccccCeeecCCCc--cccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcc
Confidence            3445667777664321  1111223446789999999998      3 4557788999999999965553