Citrus Sinensis ID: 019491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQPS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccHHHHHHHcccccccEEEEccEEEcccccHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHccEEEEcccccccccHHHHHHHHcccccccEEEEccEEccccccHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mascfrggsgississlpslphrtrlsvlpvkclssrqsrdsdsdsdlrttpspsstsgfspygwcagiggvgfLETTYLSYLKltnsdafcpiggascgdvlnsDYAVVFVAVLGLLLArksfpigineSYGRLILLGSSTSMAAASAYFLYILSTnfsgatcsYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTsyssiqplsssvaeanlpffeteittssspFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMfgseavkqlnyvecfpdgyrkgtKIAKACsdakiegfptwvingqvlsgeqdlsdlakasgfpemsqps
Flexible Loop (DISEMBL)
mascfrggsgississlpslphrtrlsvlpvkclssrqsrdsdsdsdlrttpspsstsgfspygWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAkasgfpemsqps
Low Complexity Region (SEG)
MASCFRGgsgississlpslpHRTRLSVLPVKCLssrqsrdsdsdsdlrttpspsstsgfspYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYavvfvavlglllaRKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCltsallsfslffislkefsVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQPS
Disordered region (IsUnstruct)
***********************************************************FSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL**********************
Disordered Region (DISOPRED)
**S***********************************************************YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSS*****************************SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK***********
Disordered Region (DISEMBL)
**********ISSISSLPSLPHRTRLSVLPVKC*************************GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA**********
Disordered Region (DISPRO)
********S**SSISSLPSLPHRTRLSVLPVKC*************************GFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQP*********LPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFP******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
224133580	329	predicted protein [Populus trichocarpa]	0.817	0.844	0.697	1e-114
255579785	322	conserved hypothetical protein [Ricinus	0.9	0.950	0.653	1e-113
147782976	418	hypothetical protein VITISV_010788 [Viti	0.788	0.641	0.703	1e-110
449434454	405	PREDICTED: uncharacterized protein LOC10	0.794	0.666	0.649	1e-102
449491279	380	PREDICTED: uncharacterized LOC101218748	0.794	0.710	0.649	1e-102
18419647	376	NAD(P)H dehydrogenase (quinone)s [Arabid	0.935	0.845	0.563	7e-98
21593770	375	unknown [Arabidopsis thaliana]	0.935	0.848	0.563	8e-98
297798346	375	hypothetical protein ARALYDRAFT_491070 [	0.797	0.722	0.624	4e-97
359806252	349	uncharacterized protein LOC100817843 [Gl	0.911	0.888	0.568	3e-96
357483971	352	hypothetical protein MTR_5g023180 [Medic	0.817	0.789	0.641	1e-91

>gi|224133580|ref|XP_002327630.1| predicted protein [Populus trichocarpa] gi|222836715|gb|EEE75108.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/294 (69%), Positives = 241/294 (81%), Gaps = 16/294 (5%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF----------- 111
           Y WCAG+GGVGFLET YL++LKLTNSDAFCPIGG +CGDVL+SDYAVVF           
Sbjct: 36  YNWCAGLGGVGFLETAYLTFLKLTNSDAFCPIGGGNCGDVLSSDYAVVFGVPLPLIGMIS 95

Query: 112 ---VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 168
              VA LGL  + K FP GI ES GRL+LLG +TSMA AS YFLYILST FSG +C+YCL
Sbjct: 96  YGLVAALGLQWSGKKFPFGIEESNGRLLLLGCTTSMAVASGYFLYILSTKFSGTSCTYCL 155

Query: 169 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 228
            SA LSFSLFFI+LK+F +EEIQK LG+QLCIAS+V+ +L+TSY+++Q  SSSVA+ NL 
Sbjct: 156 LSAFLSFSLFFITLKDFGLEEIQKFLGLQLCIASVVIFSLNTSYATLQRASSSVADINLE 215

Query: 229 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 288
           +F TEITT SSPFA+SLA+HL + GAKMYGAFWCSHC EQKQMFG EA + LNYVECFP+
Sbjct: 216 YFTTEITTPSSPFAISLARHLQSTGAKMYGAFWCSHCQEQKQMFGKEAAELLNYVECFPN 275

Query: 289 GYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFP--EMSQPS 340
           G+RKGTK+ KAC+DAK+EGFPTWVINGQVLSG+Q+LS+LAK SGF   E +QPS
Sbjct: 276 GFRKGTKMIKACADAKLEGFPTWVINGQVLSGDQELSELAKVSGFKIEESNQPS 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579785|ref|XP_002530730.1| conserved hypothetical protein [Ricinus communis] gi|223529694|gb|EEF31636.1| conserved hypothetical protein [Ricinus communis]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 253/323 (78%), Gaps = 17/323 (5%)

Query: 34  LSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCP 93
           +SS  + D++S+    TT S  S    S   WCA +G +GFLET YL+YLKLTNSDAFCP
Sbjct: 1   MSSGPTSDTESEPK-TTTSSSFSNWSISTNSWCAALGSIGFLETAYLTYLKLTNSDAFCP 59

Query: 94  IGGASCGDVLNSDYAVVF--------------VAVLGLLLARKSFPIGINESYGRLILLG 139
           IGG SCGDVLNSDYAVVF              VA LGLLL  K+ P GI E+ GRLILL 
Sbjct: 60  IGGGSCGDVLNSDYAVVFGVPLPVIGIVAYGLVASLGLLLPGKNLPFGIGEANGRLILLA 119

Query: 140 SSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLC 199
           S+TSMAAAS YFLYILST FSG +CSYC+ SA LSF+LFFI+LK+F +++IQKVLG+Q+C
Sbjct: 120 STTSMAAASGYFLYILSTKFSGVSCSYCIFSAFLSFTLFFITLKDFGLQDIQKVLGLQIC 179

Query: 200 IASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGA 259
           +ASLVVAAL+ SY +  P+SSS+AE +LP+   EIT +SSPFALSLA+HL +IGAK+YGA
Sbjct: 180 VASLVVAALNASYGTSPPISSSLAEVDLPYVTYEITATSSPFALSLARHLKSIGAKIYGA 239

Query: 260 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS 319
           FWCSHCLEQKQMFG +A K L+YVECFP+GYRKGTKIAKAC+DAKIEGFPTWVING+V+S
Sbjct: 240 FWCSHCLEQKQMFGKDASKMLDYVECFPNGYRKGTKIAKACADAKIEGFPTWVINGEVVS 299

Query: 320 GEQDLSDLAKASGFP--EMSQPS 340
           GE +LS+LA+ SG      SQP+
Sbjct: 300 GELELSELAQLSGLELSNSSQPT 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782976|emb|CAN72958.1| hypothetical protein VITISV_010788 [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/283 (70%), Positives = 233/283 (82%), Gaps = 15/283 (5%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF------------- 111
           WCAG+GG+GFLETTYL+YLKLTNSDAFCPIGG +C DVLNSDYA VF             
Sbjct: 129 WCAGLGGLGFLETTYLTYLKLTNSDAFCPIGGGTCSDVLNSDYAAVFGVPLPLIGMAAYG 188

Query: 112 -VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTS 170
            V +L L LA K+ P GI E+ GRL+LLG++TSM+AASAYFLYILST F GA+CSYCL S
Sbjct: 189 LVTILSLQLAGKNVPFGIGETNGRLLLLGTTTSMSAASAYFLYILSTQFPGASCSYCLVS 248

Query: 171 ALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFF 230
           ALLSFSLFF SLK+F +++IQK + +QLCIASLVVA LSTSY+++ P+S+S+AE +L  F
Sbjct: 249 ALLSFSLFFTSLKDFQLKDIQKTVVLQLCIASLVVATLSTSYNTL-PVSTSLAEIDLQPF 307

Query: 231 ETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGY 290
             EITT SSP ALSLAKHL +IGAKMYGAFWCSHC+EQKQMFG EA K L+YVECFP+GY
Sbjct: 308 TVEITTQSSPLALSLAKHLRSIGAKMYGAFWCSHCVEQKQMFGREAAKLLDYVECFPNGY 367

Query: 291 RKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333
           RKG K+ KACS A IEGFPTWVING+VLSGEQ+ S+LA+ASGF
Sbjct: 368 RKGIKMDKACSAAXIEGFPTWVINGEVLSGEQEFSELARASGF 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434454|ref|XP_004135011.1| PREDICTED: uncharacterized protein LOC101218748 [Cucumis sativus]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/285 (64%), Positives = 221/285 (77%), Gaps = 15/285 (5%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF----------- 111
           Y  CA +GG+GF+ET YLSYLKLT+S AFCPIGG  C +VLNSDYA VF           
Sbjct: 116 YTLCAALGGIGFVETAYLSYLKLTDSAAFCPIGGGGCDNVLNSDYAAVFGVPLPLIGMVA 175

Query: 112 ---VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 168
              V  + L LA K  P GI+ES GRL+LLG++TSMAAASAYFLYIL+T FSG TCSYCL
Sbjct: 176 YGLVGAVSLQLAAKKLPFGIDESGGRLVLLGTTTSMAAASAYFLYILNTQFSGVTCSYCL 235

Query: 169 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 228
            SALLSFSLFF +LK+F ++E ++ L  Q+ +A +V   LSTSY S+ P+S S AE +LP
Sbjct: 236 VSALLSFSLFFATLKDFGLDESRRRLATQIIMAGIVFFTLSTSYGSL-PISRSAAELDLP 294

Query: 229 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 288
           +FETE+T  S+P A+SLAKHL +IGAKMYGAFWCSHC+EQK+MFG EA K L+YVECFP+
Sbjct: 295 YFETELTKPSTPLAISLAKHLQSIGAKMYGAFWCSHCVEQKEMFGREAAKLLDYVECFPN 354

Query: 289 GYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333
           GY KGTKI K CSD  IEGFPTWVINGQVLSGE++LS+LA+ SGF
Sbjct: 355 GYHKGTKIEKVCSDVGIEGFPTWVINGQVLSGEKELSELAEISGF 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491279|ref|XP_004158848.1| PREDICTED: uncharacterized LOC101218748 [Cucumis sativus]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/285 (64%), Positives = 221/285 (77%), Gaps = 15/285 (5%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF----------- 111
           Y  CA +GG+GF+ET YLSYLKLT+S AFCPIGG  C +VLNSDYA VF           
Sbjct: 91  YTLCAALGGIGFVETAYLSYLKLTDSAAFCPIGGGGCDNVLNSDYAAVFGVPLPLIGMVA 150

Query: 112 ---VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 168
              V  + L LA K  P GI+ES GRL+LLG++TSMAAASAYFLYIL+T FSG TCSYCL
Sbjct: 151 YGLVGAVSLQLAAKKLPFGIDESGGRLVLLGTTTSMAAASAYFLYILNTQFSGVTCSYCL 210

Query: 169 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 228
            SALLSFSLFF +LK+F ++E ++ L  Q+ +A +V   LSTSY S+ P+S S AE +LP
Sbjct: 211 VSALLSFSLFFATLKDFGLDESRRRLATQIIMAGIVFFTLSTSYGSL-PISRSAAELDLP 269

Query: 229 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 288
           +FETE+T  S+P A+SLAKHL +IGAKMYGAFWCSHC+EQK+MFG EA K L+YVECFP+
Sbjct: 270 YFETELTKPSTPLAISLAKHLQSIGAKMYGAFWCSHCVEQKEMFGREAAKLLDYVECFPN 329

Query: 289 GYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333
           GY KGTKI K CSD  IEGFPTWVINGQVLSGE++LS+LA+ SGF
Sbjct: 330 GYHKGTKIEKVCSDVGIEGFPTWVINGQVLSGEKELSELAEISGF 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18419647|ref|NP_567988.1| NAD(P)H dehydrogenase (quinone)s [Arabidopsis thaliana] gi|20466524|gb|AAM20579.1| putative protein [Arabidopsis thaliana] gi|22136450|gb|AAM91303.1| putative protein [Arabidopsis thaliana] gi|332661159|gb|AEE86559.1| NAD(P)H dehydrogenase (quinone)s [Arabidopsis thaliana]

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 192/341 (56%), Positives = 251/341 (73%), Gaps = 23/341 (6%)

Query: 16  SLPSLPHR-----TRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSP----YGWC 66
           S+ S P R      R   +P+KC SS      DS   L ++ S S++   +     Y W 
Sbjct: 24  SVTSYPRRFEVSDRRFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWY 83

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF---VAVLGLL----- 118
            GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDYAVVF   + V+G +     
Sbjct: 84  TGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVV 143

Query: 119 ------LARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 172
                 L   + P GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YCL SA 
Sbjct: 144 TALSAELGEGNLPFGISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAF 203

Query: 173 LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFET 232
           LSFSLFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP+F T
Sbjct: 204 LSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELPYFRT 263

Query: 233 EITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK 292
           EI++SSSP+A++LAKHL++IGAKMYGAFWCSHCLEQK+MFG EA K+LNYVECFPDGY+K
Sbjct: 264 EISSSSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGREAAKELNYVECFPDGYKK 323

Query: 293 GTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333
           GTKI KAC+DA IEGFPTW+IN +VLSGE +L++LA+ +GF
Sbjct: 324 GTKILKACADAAIEGFPTWIINDKVLSGEIELAELAEMTGF 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593770|gb|AAM65737.1| unknown [Arabidopsis thaliana]

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 192/341 (56%), Positives = 251/341 (73%), Gaps = 23/341 (6%)

Query: 16  SLPSLPHR-----TRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSP----YGWC 66
           S+ S P R      R   +P+KC SS      DS   L ++ S S++   +     Y W 
Sbjct: 23  SVTSYPRRFEVSDRRFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWY 82

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF---VAVLGLL----- 118
            GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDYAVVF   + V+G +     
Sbjct: 83  TGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVV 142

Query: 119 ------LARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 172
                 L   + P GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YCL SA 
Sbjct: 143 TALSAELGEGNLPFGISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAF 202

Query: 173 LSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFET 232
           LSFSLFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP+F T
Sbjct: 203 LSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELPYFRT 262

Query: 233 EITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK 292
           EI++SSSP+A++LAKHL++IGAKMYGAFWCSHCLEQK+MFG EA K+LNYVECFPDGY+K
Sbjct: 263 EISSSSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGREAAKELNYVECFPDGYKK 322

Query: 293 GTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333
           GTKI KAC+DA IEGFPTW+IN +VLSGE +L++LA+ +GF
Sbjct: 323 GTKILKACADAAIEGFPTWIINDKVLSGEIELAELAEMTGF 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798346|ref|XP_002867057.1| hypothetical protein ARALYDRAFT_491070 [Arabidopsis lyrata subsp. lyrata] gi|297312893|gb|EFH43316.1| hypothetical protein ARALYDRAFT_491070 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 178/285 (62%), Positives = 228/285 (80%), Gaps = 14/285 (4%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF---VAVLGLL- 118
           Y W  GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDYAVVF   + V+G + 
Sbjct: 79  YNWYTGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVM 138

Query: 119 ----------LARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCL 168
                     L   + P GI+++ GR  L G +T+MA+ASAYFLYILST  SG++C YCL
Sbjct: 139 YGLVTALSAELGEGNLPFGISKTNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCL 198

Query: 169 TSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 228
            SA LSFSLFF+S+K+  ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP
Sbjct: 199 VSAFLSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELP 258

Query: 229 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 288
           +F TEI+++SSP+A++LAKHL++IGAKMYGAFWCSHCLEQK+MFG EA KQLNYVECFPD
Sbjct: 259 YFRTEISSTSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGREAAKQLNYVECFPD 318

Query: 289 GYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333
           GY+KGTKI KAC+DA IEGFPTW+IN QVLSGE +L++LA+ SGF
Sbjct: 319 GYKKGTKILKACADAGIEGFPTWIINDQVLSGEIELAELAEMSGF 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806252|ref|NP_001241213.1| uncharacterized protein LOC100817843 [Glycine max] gi|255644534|gb|ACU22770.1| unknown [Glycine max]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 198/348 (56%), Positives = 252/348 (72%), Gaps = 38/348 (10%)

Query: 13  SISSLPSLPHRT--RLSVLP-VKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPYGW---- 65
           SI   P   HR+  R+ +LP +KC          S  +  T P P       P+ W    
Sbjct: 19  SIGGAPIRHHRSPNRIGLLPPLKC----------SSLEPETAPPP-------PFDWTHKL 61

Query: 66  CAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF-------------- 111
            AG+ GVGFLET+YL+YLKLT +DAFCP+GG +C  +L+SDYA+VF              
Sbjct: 62  IAGVAGVGFLETSYLTYLKLTGADAFCPVGGGTCSKILDSDYALVFGIPLPLIGMAAYGL 121

Query: 112 VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSA 171
           VA LG+ LA K+F  GI +     +LLG++TSMAAASAYFLYIL+T FS ++CSYCL SA
Sbjct: 122 VAALGVQLASKNFRFGIEKPTAEAVLLGATTSMAAASAYFLYILTTRFSDSSCSYCLLSA 181

Query: 172 LLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFE 231
            LSF+LFF++LK+  ++E+ K LG+QL +ASLV+ +L+ SYS+ +  SSS+AE +LP+F 
Sbjct: 182 FLSFTLFFVTLKDIGLQEVSKQLGLQLLVASLVILSLNASYSNSKSASSSLAENDLPYFA 241

Query: 232 TEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYR 291
           TEITT SSPFALSLA+HLH+IGAKMYGAFWCSHC EQK+MFG EA KQL+YVECFPDG+R
Sbjct: 242 TEITTPSSPFALSLARHLHSIGAKMYGAFWCSHCQEQKEMFGREAAKQLDYVECFPDGFR 301

Query: 292 KGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQP 339
           +GTK+ KAC DAK+EGFPTW+INGQVLSGE +LS+LA+ SG+ E  QP
Sbjct: 302 RGTKMIKACIDAKLEGFPTWIINGQVLSGEVELSELAQVSGYEESVQP 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483971|ref|XP_003612272.1| hypothetical protein MTR_5g023180 [Medicago truncatula] gi|355513607|gb|AES95230.1| hypothetical protein MTR_5g023180 [Medicago truncatula]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 228/293 (77%), Gaps = 15/293 (5%)

Query: 63  YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF----------- 111
           Y   +GI G+GF+ET+YL+YLK T SD FCP+GG +C  +LNSDYAVVF           
Sbjct: 60  YKLISGIAGIGFIETSYLAYLKFTGSDVFCPVGGDTCSSILNSDYAVVFGVPLPLIGMAA 119

Query: 112 ---VAVLGL-LLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYC 167
              VA L L L  +K+ P G+N S  +L+LLGS+TSMA ASAYFLYIL+T F  ++CSYC
Sbjct: 120 YSFVAALSLQLTTKKNLPFGVNRSNAQLVLLGSTTSMATASAYFLYILTTAFPESSCSYC 179

Query: 168 LTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANL 227
           L S LLSFSLFF++LK+  ++E  K LG+QL IASLV+  L+TSYSS +  SSS+A+  L
Sbjct: 180 LLSVLLSFSLFFLTLKDIGLQEKYKQLGLQLVIASLVILTLNTSYSSAKSTSSSMAKIEL 239

Query: 228 PFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFP 287
           P+F TEITT SSPFALSLA++LH+IGAKMYGAFWCSHCLEQK+MFG EA KQL+YVECFP
Sbjct: 240 PYFATEITTPSSPFALSLARYLHSIGAKMYGAFWCSHCLEQKEMFGREAAKQLDYVECFP 299

Query: 288 DGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQPS 340
           DGYR GTK+  AC DAKIEGFPTW+INGQVLSGE +LS+LA+ASG+ E  QPS
Sbjct: 300 DGYRTGTKMIDACLDAKIEGFPTWIINGQVLSGEVELSELAQASGYSESDQPS 352

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2128028	376	LTO1 "Lumen Thiol Oxidoreducta	0.797	0.720	0.554	2.7e-84

TAIR|locus:2128028 LTO1 "Lumen Thiol Oxidoreductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 158/285 (55%), Positives = 203/285 (71%)

Query:    63 YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYXXXXX---------- 112
             Y W  GIGG+G L+T YL+YLK+T SDAFCPIGG +CGDVLNSDY               
Sbjct:    80 YNWYTGIGGIGMLDTAYLTYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVM 139

Query:   113 ----XXXXXXXXRKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCX 168
                           + P GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YC 
Sbjct:   140 YGVVTALSAELGEGNLPFGISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCL 199

Query:   169 XXXXXXXXXXXXXXXXXXVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLP 228
                               ++EIQ+V+G+Q+C+A +VVA+L+ SYS+ QP+ S   +  LP
Sbjct:   200 VSAFLSFSLFFLSVKDVKLQEIQQVVGLQICLAIIVVASLTASYSTAQPIPSRSGDIELP 259

Query:   229 FFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 288
             +F TEI++SSSP+A++LAKHL++IGAKMYGAFWCSHCLEQK+MFG EA K+LNYVECFPD
Sbjct:   260 YFRTEISSSSSPYAIALAKHLNSIGAKMYGAFWCSHCLEQKEMFGREAAKELNYVECFPD 319

Query:   289 GYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333
             GY+KGTKI KAC+DA IEGFPTW+IN +VLSGE +L++LA+ +GF
Sbjct:   320 GYKKGTKILKACADAAIEGFPTWIINDKVLSGEIELAELAEMTGF 364


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      340       266   0.00094  114 3  11 22  0.46    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.72u 0.14s 19.86t   Elapsed:  00:00:01
  Total cpu time:  19.72u 0.14s 19.86t   Elapsed:  00:00:01
  Start:  Mon May 20 15:10:28 2013   End:  Mon May 20 15:10:29 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003955 "NAD(P)H dehydrogenase (quinone) activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA;IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.1.4.1	LOW CONFIDENCE prediction!
3rd Layer	1.1.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
cd12916	133	cd12916, VKOR_1, Vitamin K epoxide reductase famil	5e-27
smart00756	142	smart00756, VKc, Family of likely enzymes that inc	5e-18
pfam07884	138	pfam07884, VKOR, Vitamin K epoxide reductase famil	4e-14
COG4243	156	COG4243, COG4243, Predicted membrane protein [Func	4e-10
cd10546	126	cd10546, VKOR, Vitamin K epoxide reductase (VKOR)	1e-08

>gnl|CDD|240599 cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants

 Score =  103 bits (258), Expect = 5e-27
 Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 14/135 (10%)

Query: 62  PYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF---------- 111
                AG+  +G LET YL+Y+KLT S A CP GG  C  VLNS YA +           
Sbjct: 1   SRRLIAGLALIGLLETAYLTYVKLTGSSAVCPGGG-GCDTVLNSPYATLLGIPLSLFGFL 59

Query: 112 --VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLT 169
             +A+L L +          E +  L+L G +T+    SAY  Y+L+    GA C YCLT
Sbjct: 60  AYLAILVLAVLPLLLKSEKLERWTWLLLFGLATAGVVFSAYLTYLLAF-VIGAFCPYCLT 118

Query: 170 SALLSFSLFFISLKE 184
           SA+LS  LF +++  
Sbjct: 119 SAVLSTLLFLLTILG 133

This family includes vitamin K epoxide reductase (VKOR) present in bacteria and plant. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Length = 133

>gnl|CDD|214805 smart00756, VKc, Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)

Query: 61  SPYGWCAGIGGVGFLETTYLSYLKLTNS-----DAFCPIGGA-SCGDVLNSDYAVVF--- 111
                   +G +G L + YL+Y KLT        A C I    SCG VL+S YA +F   
Sbjct: 3   WTRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIP 62

Query: 112 VAVLG-------LLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATC 164
           +++LG       L LA           +   +L   S + A  S Y +Y+L      A C
Sbjct: 63  LSLLGIAAYLVVLALAVLGLLGVTLPRWTWRLLFLGSLAGAVFSVYLIYLLVFVI-KALC 121

Query: 165 SYCLTSALLSFSLFFISL 182
            YC+ SA++S SLF +  
Sbjct: 122 LYCILSAVVSISLFILVT 139

Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases. Length = 142

>gnl|CDD|149126 pfam07884, VKOR, Vitamin K epoxide reductase family

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 65  WCAGIGGVGFLETTYLSYLKLTNS----DAFCPIGGA-SCGDVLNSDYAVVF---VAVLG 116
               +G +G L + YL+  K         A C I    SC  VLNS +A +F    ++LG
Sbjct: 4   IILILGLIGLLASLYLTLEKYGLLEDPYRASCDINPVVSCSKVLNSPWATIFGIPNSLLG 63

Query: 117 -------LLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLT 169
                  LLL            +  L L   S      S Y +YI      GA C YC+ 
Sbjct: 64  ILAYLVVLLLGVLGLAGVTLSRWTWLGLFLGSLVGVVFSVYLIYISVFVI-GALCLYCIL 122

Query: 170 SALLSFSLFFISLKEF 185
           SA +S  LF +S    
Sbjct: 123 SAAVSIVLFILSTIGV 138

Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases. Length = 138

>gnl|CDD|226694 COG4243, COG4243, Predicted membrane protein [Function unknown]

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 32/133 (24%), Positives = 43/133 (32%), Gaps = 23/133 (17%)

Query: 67  AGIGGVGFLETTYLSYLKLTNSDAFCPI---GGASCGDVLNSDYAVVF------------ 111
             IGG+  L         L      C     G  SC  VL+S YA +             
Sbjct: 19  GVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYF 78

Query: 112 --VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLT 169
             V +  LL                 +L+GS    +A   Y +Y L     GA C YC  
Sbjct: 79  TAVLIAALLGVAGVLE----RWTWIGLLVGS-LVGSAFVPYLIY-LELFVIGALCLYCTV 132

Query: 170 SALLSFSLFFISL 182
           + L    LF ++ 
Sbjct: 133 AHLSILLLFVLAT 145

Length = 156

>gnl|CDD|240598 cd10546, VKOR, Vitamin K epoxide reductase (VKOR) family

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 69  IGGVGFLETTYLSYLKLTNSD-AFCPIGGA-SCGDVLNSDYAVVF---VAVLGLLLARKS 123
           +  +G L + YL+Y +LT    A C  G + SC  VL S ++ +F   +++LG L     
Sbjct: 6   LAAIGLLVSLYLTYYELTEGAVAGCDAGPSSSCDLVLTSRWSRIFGVPLSLLGALYYLVV 65

Query: 124 FPIGINESYGRLI----LLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFF 179
             + ++   G  +    L  ++ +   A+A+ +Y+      GA C YCL +     +L  
Sbjct: 66  LGLLLSPPAGARLRWTALAAATFAGLGAAAWLIYLQLF-VLGAFCPYCLVAHAAGLALLA 124

VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. This family includes enzymes that are present in vertebrates, Drosophila, plants, bacteria, and archaea. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some plant and bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. Warfarin, a widely used oral anticoagulant used in medicine as well as rodenticides, inhibits the activity of VKOR, resulting in decreased levels of reduced vitamin K, which is required for the function of several clotting factors. However, anticoagulation effect of warfarin is significantly associated with polymorphism of certain genes, including VKORC1. Interestingly, in rodents, an adaptive trait appears to have evolved convergently by selection on new or standing genetic polymorphisms in VKORC1 as well as by adaptive introgressive hybridization between species, likely brought about by human-mediated dispersal. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
smart00756	142	VKc Family of likely enzymes that includes the cat	99.9
PRK14889	143	VKOR family protein; Provisional	99.84
PF07884	137	VKOR: Vitamin K epoxide reductase family; InterPro	99.81
COG4243	156	Predicted membrane protein [Function unknown]	99.78
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.5
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.47
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.45
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.42
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.41
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.4
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.35
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.35
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.33
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.33
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.32
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.3
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.29
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.28
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.26
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.24
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.24
PHA02278	103	thioredoxin-like protein	99.21
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.21
PHA02125	75	thioredoxin-like protein	99.21
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.2
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.2
PTZ00102	477	disulphide isomerase; Provisional	99.17
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.17
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.13
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.11
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.1
PRK09381	109	trxA thioredoxin; Provisional	99.1
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.07
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.05
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.04
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.03
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.02
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.0
PRK10996	139	thioredoxin 2; Provisional	98.99
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	98.99
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.98
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.98
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	98.98
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.97
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.97
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.96
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.95
PLN02309	457	5'-adenylylsulfate reductase	98.95
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.94
PTZ00051	98	thioredoxin; Provisional	98.93
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.93
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.92
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	98.89
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.88
PTZ00102	477	disulphide isomerase; Provisional	98.88
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.87
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.84
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.83
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.82
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.81
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.78
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.78
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.78
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.75
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.74
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.73
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.73
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.72
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.64
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.58
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.57
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	98.54
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.49
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.49
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	98.47
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	98.46
PHA03050	108	glutaredoxin; Provisional	98.45
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.41
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.39
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.38
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.37
PRK11200	85	grxA glutaredoxin 1; Provisional	98.36
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.36
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	98.35
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	98.33
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	98.33
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.32
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.3
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	98.27
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	98.26
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	98.25
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	98.24
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.22
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.21
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.2
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.18
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	98.17
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.14
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.13
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	98.13
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.12
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.11
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.1
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	98.1
smart00594	122	UAS UAS domain.	98.07
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.07
PRK10638	83	glutaredoxin 3; Provisional	98.06
PRK10329	81	glutaredoxin-like protein; Provisional	98.04
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	98.03
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.02
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.99
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	97.97
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	97.95
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.88
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	97.87
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.78
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.78
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.77
PTZ00062	204	glutaredoxin; Provisional	97.74
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.73
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	97.72
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.58
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.54
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.52
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	97.46
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.45
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	97.43
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	97.43
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.42
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	97.42
PRK10824	115	glutaredoxin-4; Provisional	97.32
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	97.32
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.24
PTZ00062	204	glutaredoxin; Provisional	97.23
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.2
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.08
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.02
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.97
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	96.85
PF13728	215	TraF: F plasmid transfer operon protein	96.74
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	96.64
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	96.62
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	96.58
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	96.31
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	95.92
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	95.78
PTZ00056	199	glutathione peroxidase; Provisional	95.36
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	95.26
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	95.16
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	94.88
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	94.86
COG2143	182	Thioredoxin-related protein [Posttranslational mod	94.86
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	94.83
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	94.79
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	94.56
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	94.56
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	94.52
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	94.34
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	94.28
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	94.26
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	94.21
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	94.12
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	94.08
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	94.06
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	93.77
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	93.43
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	92.97
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	92.84
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	92.74
PLN02412	167	probable glutathione peroxidase	92.69
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	92.65
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	92.57
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	92.5
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	92.39
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	92.36
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	92.04
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	91.56
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	90.91
PTZ00256	183	glutathione peroxidase; Provisional	90.63
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	90.6
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	90.4
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	90.19
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	90.11
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	89.79
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	89.68
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	89.31
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	88.47
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	88.35
PRK13190	202	putative peroxiredoxin; Provisional	88.28
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	88.18
KOG3425	128	consensus Uncharacterized conserved protein [Funct	88.04
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	87.17
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	86.99
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	86.31
PRK12559	131	transcriptional regulator Spx; Provisional	86.26
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	86.16
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	85.53
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	85.38
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	84.75
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	83.68
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	81.46
PTZ00253	199	tryparedoxin peroxidase; Provisional	81.13
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	80.87
PRK10606	183	btuE putative glutathione peroxidase; Provisional	80.04

>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase

Probab=99.90  E-value=2.2e-23  Score=181.30  Aligned_cols=117  Identities=35%  Similarity=0.546  Sum_probs=99.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCCC-CccccccccchhHHHH---HHHHHHHh------------h
Q 019491           62 PYGWCAGIGGVGFLETTYLSYLKLTNS-----DAFCPIG-GASCGDVLNSDYAVVF---VAVLGLLL------------A  120 (340)
Q Consensus        62 ~~~~i~~La~iGll~T~YLT~~kl~~~-----~~~C~i~-~~sC~~VL~S~ya~vf---vaalg~ll------------~  120 (340)
                      ...++.+++++|+++|+||+++|++..     ++.||+| .+||++|++||||++|   ++.+|+..            .
T Consensus         4 ~~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~   83 (142)
T smart00756        4 TRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLL   83 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHc
Confidence            345678999999999999999998643     3899998 5799999999999999   44444321            1


Q ss_pred             cccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhc
Q 019491          121 RKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE  184 (340)
Q Consensus       121 ~~~~~~~~~~~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g  184 (340)
                      ..+.+     +|.|+.+++++++|.+||.||+|++.|+| |++|+||+++|++++++|++++.+
T Consensus        84 ~~~~~-----~~~~~~l~~~~~~~~~~s~yl~y~~~~vi-~~~C~~C~~~~~~~~~lf~~~~~~  141 (142)
T smart00756       84 GVTLP-----RWTWRLLFLGSLAGAVFSVYLIYLLVFVI-KALCLYCILSAVVSISLFILVTIG  141 (142)
T ss_pred             cccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHhc
Confidence            22333     88999999999999999999999999998 999999999999999999998865

Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.

>PRK14889 VKOR family protein; Provisional

Probab=99.84  E-value=1.5e-20  Score=164.11  Aligned_cols=121  Identities=21%  Similarity=0.246  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCC-CccccccccchhHHHH---HHHHHHHh------hcccCCCcccc
Q 019491           63 YGWCAGIGGVGFLETTYLSYLKL--TNSDAFCPIG-GASCGDVLNSDYAVVF---VAVLGLLL------ARKSFPIGINE  130 (340)
Q Consensus        63 ~~~i~~La~iGll~T~YLT~~kl--~~~~~~C~i~-~~sC~~VL~S~ya~vf---vaalg~ll------~~~~~~~~~~~  130 (340)
                      ..++++++++|+++|.|++++|.  +++++.||+| .+||++|++||||++|   ...+|+..      .......+ ..
T Consensus         9 ~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~-~~   87 (143)
T PRK14889          9 LYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT-LK   87 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-hh
Confidence            34567999999999999999883  4678999998 4799999999999998   34444321      00000000 12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhcc
Q 019491          131 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEF  185 (340)
Q Consensus       131 ~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g~  185 (340)
                      +|.+......+.++.+|+.||+|++.|+| |++|+||+++|++.+++|++.+...
T Consensus        88 ~~~~~~~~~~~~~g~~~~~yL~y~~~fvi-~a~C~~C~~~~~~~~~~~~~~~~~~  141 (143)
T PRK14889         88 RILGRVISLWSIIGLAIVPYLVYLEVFVL-GAICIYCTIAHVSILAAFILILIKL  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666667788999999999999998 9999999999999999999887654

>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes

Probab=99.81  E-value=4.5e-20  Score=158.61  Aligned_cols=119  Identities=34%  Similarity=0.537  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCC-CccccccccchhHHHH---HHHHHHHh-------hc-ccCCCc
Q 019491           64 GWCAGIGGVGFLETTYLSYLKLTNS----DAFCPIG-GASCGDVLNSDYAVVF---VAVLGLLL-------AR-KSFPIG  127 (340)
Q Consensus        64 ~~i~~La~iGll~T~YLT~~kl~~~----~~~C~i~-~~sC~~VL~S~ya~vf---vaalg~ll-------~~-~~~~~~  127 (340)
                      .++.+++++|+++|.||++++++..    ++.||++ ..||++|++||||++|   .+.+|...       .. ...+.+
T Consensus         3 ~~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~   82 (137)
T PF07884_consen    3 ILLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRR   82 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccc
Confidence            4677999999999999999999755    4999988 7899999999999998   55555321       11 111112


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhc
Q 019491          128 INESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE  184 (340)
Q Consensus       128 ~~~~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g  184 (340)
                      . +++.|..+++.++.+.+++.||+|++.+++ |++|+||+++|++++.++++++.|
T Consensus        83 ~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~i-~~~C~~Cl~~~~i~~~l~~l~~~~  137 (137)
T PF07884_consen   83 L-SRWLWLLLFALSFIGLVFSLYLIYIQIFVI-KAWCPYCLVSYAINLALFILSLIR  137 (137)
T ss_dssp             --STTHHHHHHHHHHHHHHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHHHS-
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhcC
Confidence            2 278899999999999999999999999998 999999999999999999998865

VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.

>COG4243 Predicted membrane protein [Function unknown]

Probab=99.78  E-value=1.4e-18  Score=153.14  Aligned_cols=120  Identities=25%  Similarity=0.315  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHH---HHHhcCCC--CCCCCC-CccccccccchhHHHH---HHHHHH-----------Hhhc
Q 019491           62 PYGWCAGIGGVGFLETTYLS---YLKLTNSD--AFCPIG-GASCGDVLNSDYAVVF---VAVLGL-----------LLAR  121 (340)
Q Consensus        62 ~~~~i~~La~iGll~T~YLT---~~kl~~~~--~~C~i~-~~sC~~VL~S~ya~vf---vaalg~-----------ll~~  121 (340)
                      +..+...++.+|.+.+.-++   +.++.++.  ..|+.+ .++|++|++||||++|   ...+|.           +...
T Consensus        11 ~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~all~~~   90 (156)
T COG4243          11 LGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAALLGVA   90 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            33334455555555554444   44555654  445555 5799999999999998   222221           1111


Q ss_pred             ccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhccch
Q 019491          122 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV  187 (340)
Q Consensus       122 ~~~~~~~~~~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g~~~  187 (340)
                      ..++     +|+|+.++++++.|++|+.||+|+++|++ |++|+||+++|+.++++|++...+++|
T Consensus        91 ~~l~-----~~~~~~l~v~~~~g~~f~~yLiY~e~~~~-~alC~YCtv~h~~~l~~~vl~~~~~~~  150 (156)
T COG4243          91 GVLE-----RWTWIGLLVGSLVGSAFVPYLIYLELFVI-GALCLYCTVAHLSILLLFVLATAGRRW  150 (156)
T ss_pred             HhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2223     99999999999999999999999999998 999999999999999999999999987

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.50  E-value=5.4e-14  Score=113.07  Aligned_cols=71  Identities=20%  Similarity=0.376  Sum_probs=59.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      -+++|+|+||+||+++++.|.+.|.+     .+..|||+.+        .++|++++|++|||+.+  +|+   +|.|.+
T Consensus        21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~   92 (101)
T cd03003          21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--------RMLCRSQGVNSYPSLYVFPSGMNPEKYYGDR   92 (101)
T ss_pred             EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--------HHHHHHcCCCccCEEEEEcCCCCcccCCCCC
Confidence            36789999999999999999876532     2568999854        48899999999999887  775   699999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.+|+
T Consensus        93 ~~~~l~~f~  101 (101)
T cd03003          93 SKESLVKFA  101 (101)
T ss_pred             CHHHHHhhC
Confidence            999999874

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.47  E-value=1e-13  Score=116.49  Aligned_cols=74  Identities=19%  Similarity=0.279  Sum_probs=60.4

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhh-hhCCCcccceeEE--CCE---Ee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKAC-SDAKIEGFPTWVI--NGQ---VL  318 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC-~~~~I~GyPTw~i--nG~---~y  318 (340)
                      ++.-+++|+||||+||+.+++.|.+.|.+     .+..|||+.+        .++| ++++|++|||+++  ||+   +|
T Consensus        29 ~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--------~~l~~~~~~I~~~PTl~lf~~g~~~~~y  100 (113)
T cd03006          29 AEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--------QGKCRKQKHFFYFPVIHLYYRSRGPIEY  100 (113)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--------hHHHHHhcCCcccCEEEEEECCccceEE
Confidence            34447799999999999999999986532     2468999855        3789 5899999999887  775   79


Q ss_pred             eCCCCHHHHHHHh
Q 019491          319 SGEQDLSDLAKAS  331 (340)
Q Consensus       319 ~G~r~l~~La~~s  331 (340)
                      .|.++.++|..|.
T Consensus       101 ~G~~~~~~i~~~~  113 (113)
T cd03006         101 KGPMRAPYMEKFV  113 (113)
T ss_pred             eCCCCHHHHHhhC
Confidence            9999999998863

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.45  E-value=2.6e-13  Score=110.49  Aligned_cols=70  Identities=23%  Similarity=0.408  Sum_probs=58.0

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc-----------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK-----------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----  316 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~-----------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----  316 (340)
                      +++|+|+||+||+++++.|.+.|.+           .+.+|||+.+        .++|+++||++|||.++  ||+    
T Consensus        22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Ptl~~~~~g~~~~~   93 (108)
T cd02996          22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--------SDIADRYRINKYPTLKLFRNGMMMKR   93 (108)
T ss_pred             EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--------HHHHHhCCCCcCCEEEEEeCCcCcce
Confidence            6689999999999999999765421           2457999864        48999999999999887  665    


Q ss_pred             EeeCCCCHHHHHHHh
Q 019491          317 VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 ~y~G~r~l~~La~~s  331 (340)
                      +|.|.|+.++|.+|.
T Consensus        94 ~~~g~~~~~~l~~fi  108 (108)
T cd02996          94 EYRGQRSVEALAEFV  108 (108)
T ss_pred             ecCCCCCHHHHHhhC
Confidence            689999999999874

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.2e-13  Score=141.29  Aligned_cols=76  Identities=24%  Similarity=0.434  Sum_probs=64.2

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---  316 (340)
                      ++.-.++||||||+||+++.|.|.+.|..        .+..|||+.+        .++|.+++|+||||++|  ||+   
T Consensus        42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--------~~~~~~y~v~gyPTlkiFrnG~~~~  113 (493)
T KOG0190|consen   42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--------SDLASKYEVRGYPTLKIFRNGRSAQ  113 (493)
T ss_pred             CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--------hhhHhhhcCCCCCeEEEEecCCcce
Confidence            34446789999999999999999986531        2679999976        38999999999999998  776   


Q ss_pred             EeeCCCCHHHHHHHhCC
Q 019491          317 VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       317 ~y~G~r~l~~La~~sg~  333 (340)
                      .|.|.|+.|.+..|+--
T Consensus       114 ~Y~G~r~adgIv~wl~k  130 (493)
T KOG0190|consen  114 DYNGPREADGIVKWLKK  130 (493)
T ss_pred             eccCcccHHHHHHHHHh
Confidence            69999999999998754

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.41  E-value=6.6e-13  Score=106.88  Aligned_cols=72  Identities=18%  Similarity=0.312  Sum_probs=59.0

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E---EeeC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLSG  320 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~---~y~G  320 (340)
                      .-+++|+|+||+||+++++.|.+.+.+     .+..|||+.+        .++|++++|++|||+.+  +| +   +|.|
T Consensus        21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G   92 (104)
T cd03004          21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--------ESLCQQANIRAYPTIRLYPGNASKYHSYNG   92 (104)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--------HHHHHHcCCCcccEEEEEcCCCCCceEccC
Confidence            347789999999999999999876532     2468999854        48999999999999887  55 4   7999


Q ss_pred             CCC-HHHHHHHh
Q 019491          321 EQD-LSDLAKAS  331 (340)
Q Consensus       321 ~r~-l~~La~~s  331 (340)
                      .++ .++|.+|.
T Consensus        93 ~~~~~~~l~~~i  104 (104)
T cd03004          93 WHRDADSILEFI  104 (104)
T ss_pred             CCCCHHHHHhhC
Confidence            987 99998873

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.40  E-value=1.1e-12  Score=105.16  Aligned_cols=77  Identities=18%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             HhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--
Q 019491          247 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--  316 (340)
Q Consensus       247 ~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--  316 (340)
                      +.++..-+++|+|+|||||+++++.|.+.+.  +    .+..|||+.+        .++|++++|++|||..+  +|+  
T Consensus        13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~   84 (101)
T cd02994          13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE--------PGLSGRFFVTALPTIYHAKDGVFR   84 (101)
T ss_pred             HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC--------HhHHHHcCCcccCEEEEeCCCCEE
Confidence            3445556889999999999999999987542  1    2458999754        47899999999999887  776  


Q ss_pred             EeeCCCCHHHHHHHh
Q 019491          317 VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 ~y~G~r~l~~La~~s  331 (340)
                      +|.|.++.++|.++.
T Consensus        85 ~~~G~~~~~~l~~~i   99 (101)
T cd02994          85 RYQGPRDKEDLISFI   99 (101)
T ss_pred             EecCCCCHHHHHHHH
Confidence            699999999999875

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.35  E-value=3.9e-12  Score=100.37  Aligned_cols=73  Identities=22%  Similarity=0.423  Sum_probs=60.6

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--c-c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K-Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~-~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +.-+++|+++||+||+++++.|.+.+.  . .  +..|||+.+        .++|++++|+++||+.+  ||+   +|.|
T Consensus        18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g   89 (103)
T PF00085_consen   18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN--------KELCKKYGVKSVPTIIFFKNGKEVKRYNG   89 (103)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS--------HHHHHHTTCSSSSEEEEEETTEEEEEEES
T ss_pred             CCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc--------chhhhccCCCCCCEEEEEECCcEEEEEEC
Confidence            455789999999999999999987542  2 2  347888743        58999999999999887  776   7999


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus        90 ~~~~~~l~~~i  100 (103)
T PF00085_consen   90 PRNAESLIEFI  100 (103)
T ss_dssp             SSSHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.35  E-value=2.2e-12  Score=104.13  Aligned_cols=73  Identities=25%  Similarity=0.469  Sum_probs=59.0

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--------E
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--------V  317 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--------~  317 (340)
                      -+++|+|+||+||+++++.|.+.+.+     .+..|||+.+.      ..++|++++|++|||..+  +|+        +
T Consensus        21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~------~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~   94 (109)
T cd03002          21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK------NKPLCGKYGVQGFPTLKVFRPPKKASKHAVED   94 (109)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc------cHHHHHHcCCCcCCEEEEEeCCCccccccccc
Confidence            47789999999999999999875422     24568998642      258999999999999887  442        6


Q ss_pred             eeCCCCHHHHHHHh
Q 019491          318 LSGEQDLSDLAKAS  331 (340)
Q Consensus       318 y~G~r~l~~La~~s  331 (340)
                      |.|.++.++|.+|.
T Consensus        95 ~~G~~~~~~l~~fi  108 (109)
T cd03002          95 YNGERSAKAIVDFV  108 (109)
T ss_pred             ccCccCHHHHHHHh
Confidence            99999999999885

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.33  E-value=2.8e-12  Score=108.81  Aligned_cols=78  Identities=12%  Similarity=0.059  Sum_probs=62.8

Q ss_pred             CeEEEcc--CCCH---HHHHHHHHHhHHhh-ccCceeECCCCCCCCChhhHhhhhhCCCc--ccceeEE--CCE-----E
Q 019491          253 GAKMYGA--FWCS---HCLEQKQMFGSEAV-KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ-----V  317 (340)
Q Consensus       253 g~~~YgA--~WCp---HC~~qk~lfgk~A~-~~l~yVeC~~~g~~~~~k~~~lC~~~~I~--GyPTw~i--nG~-----~  317 (340)
                      -+++|+|  |||+   ||+++.+.|.+.+. ..|+.|||+..+..   ...++|+++||+  ||||+++  ||+     .
T Consensus        21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~---~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~   97 (116)
T cd03007          21 SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEK---LNMELGERYKLDKESYPVIYLFHGGDFENPVP   97 (116)
T ss_pred             EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccch---hhHHHHHHhCCCcCCCCEEEEEeCCCcCCCcc
Confidence            4678889  9999   99999999987542 34789999753321   136899999999  9999887  673     6


Q ss_pred             eeCC-CCHHHHHHHhCC
Q 019491          318 LSGE-QDLSDLAKASGF  333 (340)
Q Consensus       318 y~G~-r~l~~La~~sg~  333 (340)
                      |+|. |+.++|.+|+.-
T Consensus        98 Y~G~~r~~~~lv~~v~~  114 (116)
T cd03007          98 YSGADVTVDALQRFLKG  114 (116)
T ss_pred             CCCCcccHHHHHHHHHh
Confidence            9997 999999998754

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.33  E-value=3.7e-12  Score=103.83  Aligned_cols=72  Identities=22%  Similarity=0.318  Sum_probs=56.2

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--EeeCCCCH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGEQDL  324 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y~G~r~l  324 (340)
                      -++.|+|+||+||+++++.|.+.+.  ..+.  .||++.+       ..+++++++|++|||..+  +|+  +|.|.++.
T Consensus        21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~-------~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~   93 (100)
T cd02999          21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI-------KPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTL   93 (100)
T ss_pred             EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC-------CHHHHHhcCCeecCEEEEEcCCceeEecCCCCH
Confidence            3678999999999999999987542  2343  4554411       258999999999999887  554  79999999


Q ss_pred             HHHHHHh
Q 019491          325 SDLAKAS  331 (340)
Q Consensus       325 ~~La~~s  331 (340)
                      ++|.+|.
T Consensus        94 ~~l~~f~  100 (100)
T cd02999          94 DSLAAFY  100 (100)
T ss_pred             HHHHhhC
Confidence            9998873

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.32  E-value=4.1e-12  Score=100.97  Aligned_cols=71  Identities=25%  Similarity=0.575  Sum_probs=57.7

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhh--c------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      -+++|+|+||+||+++++.|.+.+.  +      .+..|||+.+        .++|++++|+++||+.+  +|+   +|.
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~   90 (102)
T cd03005          19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--------RELCSEFQVRGYPTLLLFKDGEKVDKYK   90 (102)
T ss_pred             EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--------hhhHhhcCCCcCCEEEEEeCCCeeeEee
Confidence            4678999999999999999876432  1      2457899864        37899999999999887  665   699


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus        91 G~~~~~~l~~~i  102 (102)
T cd03005          91 GTRDLDSLKEFV  102 (102)
T ss_pred             CCCCHHHHHhhC
Confidence            999999998863

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.30  E-value=1.1e-11  Score=98.24  Aligned_cols=71  Identities=20%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      -++.|+|+||+||+++++.|.+.+.+   .  +..|||+.+        .++|++++|+++||.++  +|+   ++.|.+
T Consensus        15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~   86 (96)
T cd02956          15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ--------PQIAQQFGVQALPTVYLFAAGQPVDGFQGAQ   86 (96)
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC--------HHHHHHcCCCCCCEEEEEeCCEEeeeecCCC
Confidence            37789999999999999999775421   2  357888754        48999999999999887  776   699999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        87 ~~~~l~~~l   95 (96)
T cd02956          87 PEEQLRQML   95 (96)
T ss_pred             CHHHHHHHh
Confidence            999999875

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.29  E-value=9.3e-12  Score=102.15  Aligned_cols=74  Identities=15%  Similarity=0.259  Sum_probs=57.1

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--c--c--CceeECCCCCCCCChhhHhhhhh-CCCcccceeEE--CC----EE
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K--Q--LNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI--NG----QV  317 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~--l~yVeC~~~g~~~~~k~~~lC~~-~~I~GyPTw~i--nG----~~  317 (340)
                      +.-+++|+|+|||||+++++.|.+.+.  +  .  +..|||+.+.       .++|++ ++|++|||..+  +|    ..
T Consensus        22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-------~~~~~~~~~v~~~Pti~~f~~~~~~~~~   94 (109)
T cd02993          22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-------REFAKEELQLKSFPTILFFPKNSRQPIK   94 (109)
T ss_pred             CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-------hhhHHhhcCCCcCCEEEEEcCCCCCcee
Confidence            455789999999999999999987542  1  1  4578998631       367875 89999999886  33    26


Q ss_pred             eeCC-CCHHHHHHHh
Q 019491          318 LSGE-QDLSDLAKAS  331 (340)
Q Consensus       318 y~G~-r~l~~La~~s  331 (340)
                      |.|. |+.++|.+|.
T Consensus        95 y~g~~~~~~~l~~f~  109 (109)
T cd02993          95 YPSEQRDVDSLLMFV  109 (109)
T ss_pred             ccCCCCCHHHHHhhC
Confidence            9995 9999998874

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.28  E-value=1.2e-11  Score=98.47  Aligned_cols=71  Identities=20%  Similarity=0.355  Sum_probs=57.7

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----EeeCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLSGE  321 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----~y~G~  321 (340)
                      -+++|+|+||+||+++++.|.+-+.+     .+.++||+.+        .++|++++|+++||..+  +|+    +|.|.
T Consensus        21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~   92 (103)
T cd03001          21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH--------QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGG   92 (103)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch--------HHHHHHCCCCccCEEEEECCCCcceeecCCC
Confidence            46788899999999999999774421     2457888754        48899999999999876  552    69999


Q ss_pred             CCHHHHHHHh
Q 019491          322 QDLSDLAKAS  331 (340)
Q Consensus       322 r~l~~La~~s  331 (340)
                      ++.++|.+|.
T Consensus        93 ~~~~~l~~~~  102 (103)
T cd03001          93 RTAKAIVSAA  102 (103)
T ss_pred             CCHHHHHHHh
Confidence            9999999875

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.26  E-value=1.6e-11  Score=94.20  Aligned_cols=72  Identities=19%  Similarity=0.368  Sum_probs=57.8

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCCCCHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSD  326 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~  326 (340)
                      .+++|+++|||||+++++.+.+.+.   .++.  .||++.+        .++++++||+++||.++||+ ++.|.++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~   73 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN--------PQKAMEYGIMAVPAIVINGDVEFIGAPTKEE   73 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC--------HHHHHHcCCccCCEEEECCEEEEecCCCHHH
Confidence            4678999999999999999987432   2243  5665532        47889999999999999987 8899999999


Q ss_pred             HHHHhC
Q 019491          327 LAKASG  332 (340)
Q Consensus       327 La~~sg  332 (340)
                      |.++..
T Consensus        74 l~~~l~   79 (82)
T TIGR00411        74 LVEAIK   79 (82)
T ss_pred             HHHHHH
Confidence            988753

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.24  E-value=6.2e-11  Score=110.83  Aligned_cols=72  Identities=21%  Similarity=0.366  Sum_probs=57.8

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      .-+++|+|+|||||+++++.|.+.+.+     .+..|||+.+        .++|++++|++|||..+  ||+   .+.|.
T Consensus        54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--------~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~  125 (224)
T PTZ00443         54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--------LNLAKRFAIKGYPTLLLFDKGKMYQYEGGD  125 (224)
T ss_pred             CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--------HHHHHHcCCCcCCEEEEEECCEEEEeeCCC
Confidence            447789999999999999999875421     2456788754        48999999999999876  887   34688


Q ss_pred             CCHHHHHHHh
Q 019491          322 QDLSDLAKAS  331 (340)
Q Consensus       322 r~l~~La~~s  331 (340)
                      ++.++|.++.
T Consensus       126 ~s~e~L~~fi  135 (224)
T PTZ00443        126 RSTEKLAAFA  135 (224)
T ss_pred             CCHHHHHHHH
Confidence            9999999884

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.24  E-value=2.2e-11  Score=100.71  Aligned_cols=74  Identities=12%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc----c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      +.-+++|+|+||+||+++++.|.+.+.+    .  +..|||+.+        .++|++++|++|||..+  +|+   ++.
T Consensus        25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~--------~~l~~~~~V~~~Pt~~i~~~g~~~~~~~   96 (111)
T cd02963          25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE--------RRLARKLGAHSVPAIVGIINGQVTFYHD   96 (111)
T ss_pred             CeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc--------HHHHHHcCCccCCEEEEEECCEEEEEec
Confidence            4457789999999999999998764321    2  457888754        47899999999999886  887   578


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.++|.++..
T Consensus        97 G~~~~~~l~~~i~  109 (111)
T cd02963          97 SSFTKQHVVDFVR  109 (111)
T ss_pred             CCCCHHHHHHHHh
Confidence            9999999998763

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PHA02278 thioredoxin-like protein

Probab=99.21  E-value=8.3e-11  Score=97.28  Aligned_cols=85  Identities=14%  Similarity=0.088  Sum_probs=63.9

Q ss_pred             HHHHHhhcccC--eEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--
Q 019491          243 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--  313 (340)
Q Consensus       243 ~~la~~L~~~g--~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--  313 (340)
                      .+|.+++++.+  ++.|+|+||++|+.++|.|.+.+.+     .+.+||.+.+..+    ..+++++++|++.||+.+  
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d----~~~l~~~~~I~~iPT~i~fk   80 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD----REKAVKLFDIMSTPVLIGYK   80 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc----cHHHHHHCCCccccEEEEEE
Confidence            34555554444  6689999999999999999875432     2456777754211    247899999999999887  


Q ss_pred             CCE---EeeCCCCHHHHHHHh
Q 019491          314 NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       314 nG~---~y~G~r~l~~La~~s  331 (340)
                      ||+   ++.|..+.++|.++-
T Consensus        81 ~G~~v~~~~G~~~~~~l~~~~  101 (103)
T PHA02278         81 DGQLVKKYEDQVTPMQLQELE  101 (103)
T ss_pred             CCEEEEEEeCCCCHHHHHhhh
Confidence            887   689999999998864

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.21  E-value=3.2e-11  Score=97.71  Aligned_cols=74  Identities=16%  Similarity=0.365  Sum_probs=58.4

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--Ee
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VL  318 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y  318 (340)
                      ..-+++|+|+|||||+++++.|.+.+.+        .+.++||+.+        .++|++++|+++||..+  ||.  +|
T Consensus        16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~I~~~Pt~~l~~~~~~~~~   87 (104)
T cd03000          16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY--------SSIASEFGVRGYPTIKLLKGDLAYNY   87 (104)
T ss_pred             CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC--------HhHHhhcCCccccEEEEEcCCCceee
Confidence            3447789999999999999998775422        1346888753        48899999999999887  443  69


Q ss_pred             eCCCCHHHHHHHhC
Q 019491          319 SGEQDLSDLAKASG  332 (340)
Q Consensus       319 ~G~r~l~~La~~sg  332 (340)
                      .|.++.++|.++..
T Consensus        88 ~G~~~~~~l~~~~~  101 (104)
T cd03000          88 RGPRTKDDIVEFAN  101 (104)
T ss_pred             cCCCCHHHHHHHHH
Confidence            99999999998863

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PHA02125 thioredoxin-like protein

Probab=99.21  E-value=6.4e-11  Score=91.64  Aligned_cols=69  Identities=26%  Similarity=0.527  Sum_probs=53.1

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE---EeeCC-CCHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ---VLSGE-QDLSDLAK  329 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~---~y~G~-r~l~~La~  329 (340)
                      +++|+|+|||||+++++.+.+.+.   .+++.+.+.      ..++.++++|+++||.. +|+   ++.|. +++.+|.+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~~---~~~~vd~~~------~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~   71 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVEY---TYVDVDTDE------GVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKE   71 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHhh---eEEeeeCCC------CHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHH
Confidence            578999999999999999976432   344443331      25889999999999987 775   57885 77899988


Q ss_pred             HhC
Q 019491          330 ASG  332 (340)
Q Consensus       330 ~sg  332 (340)
                      ..|
T Consensus        72 ~~~   74 (75)
T PHA02125         72 KLG   74 (75)
T ss_pred             HhC
Confidence            776

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.20  E-value=3.1e-11  Score=95.77  Aligned_cols=73  Identities=25%  Similarity=0.372  Sum_probs=57.6

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc-----c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E---Ee
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VL  318 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~---~y  318 (340)
                      .-+++|+|+||+||+++++.|.+.+.+     .  +..+||+.+       ..++|++++|+++||+.+  +| +   +|
T Consensus        20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~   92 (105)
T cd02998          20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-------NKDLAKKYGVSGFPTLKFFPKGSTEPVKY   92 (105)
T ss_pred             cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-------chhhHHhCCCCCcCEEEEEeCCCCCcccc
Confidence            347799999999999999999775421     1  346888752       148899999999999987  34 3   69


Q ss_pred             eCCCCHHHHHHHh
Q 019491          319 SGEQDLSDLAKAS  331 (340)
Q Consensus       319 ~G~r~l~~La~~s  331 (340)
                      .|.++.++|.+|.
T Consensus        93 ~g~~~~~~l~~~i  105 (105)
T cd02998          93 EGGRDLEDLVKFV  105 (105)
T ss_pred             CCccCHHHHHhhC
Confidence            9999999999873

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.20  E-value=3.8e-11  Score=95.27  Aligned_cols=72  Identities=25%  Similarity=0.441  Sum_probs=57.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc-------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----  316 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~-------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-----  316 (340)
                      +.-+++|+|+||+||+.+++.|.+.+..       .+.+|||+.+         ++|.+.++++|||+.+  +|+     
T Consensus        19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~~Pt~~~~~~~~~~~~~   89 (104)
T cd02995          19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---------DVPSEFVVDGFPTILFFPAGDKSNPI   89 (104)
T ss_pred             CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---------hhhhhccCCCCCEEEEEcCCCcCCce
Confidence            3447789999999999999999875421       1357898743         5678899999999887  554     


Q ss_pred             EeeCCCCHHHHHHHh
Q 019491          317 VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 ~y~G~r~l~~La~~s  331 (340)
                      +|.|.++.++|.+|.
T Consensus        90 ~~~g~~~~~~l~~fi  104 (104)
T cd02995          90 KYEGDRTLEDLIKFI  104 (104)
T ss_pred             EccCCcCHHHHHhhC
Confidence            699999999999873

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PTZ00102 disulphide isomerase; Provisional

Probab=99.17  E-value=1.4e-10  Score=116.27  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=61.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--c------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--Ee
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VL  318 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y  318 (340)
                      +.-+++|+|+||+||+++++.|.+.|.  +      .+..|||+.+        .++|++++|+||||+++  +|+  +|
T Consensus        50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~y  121 (477)
T PTZ00102         50 EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--------MELAQEFGVRGYPTIKFFNKGNPVNY  121 (477)
T ss_pred             CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--------HHHHHhcCCCcccEEEEEECCceEEe
Confidence            445789999999999999999877541  1      2457999854        48999999999999887  554  69


Q ss_pred             eCCCCHHHHHHHhCC
Q 019491          319 SGEQDLSDLAKASGF  333 (340)
Q Consensus       319 ~G~r~l~~La~~sg~  333 (340)
                      .|.++.++|.++..-
T Consensus       122 ~g~~~~~~l~~~l~~  136 (477)
T PTZ00102        122 SGGRTADGIVSWIKK  136 (477)
T ss_pred             cCCCCHHHHHHHHHH
Confidence            999999999988654

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.17  E-value=1.1e-10  Score=92.85  Aligned_cols=74  Identities=30%  Similarity=0.520  Sum_probs=57.8

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhh--c---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAV--K---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .-++.|+|+||++|+++++.+.+.+.  +   .  +..+||+.+.      ...+|++++|++|||.++  +|+   +|.
T Consensus        19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~   92 (104)
T cd02997          19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE------HDALKEEYNVKGFPTFKYFENGKFVEKYE   92 (104)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc------cHHHHHhCCCccccEEEEEeCCCeeEEeC
Confidence            44778999999999999998866431  1   1  3467887641      258899999999999877  665   699


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.+|.
T Consensus        93 g~~~~~~l~~~l  104 (104)
T cd02997          93 GERTAEDIIEFM  104 (104)
T ss_pred             CCCCHHHHHhhC
Confidence            999999998863

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.13  E-value=1.4e-10  Score=96.62  Aligned_cols=73  Identities=25%  Similarity=0.477  Sum_probs=55.3

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhh--c------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C-------
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N-------  314 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n-------  314 (340)
                      .-+++|+|+||+||+.+++.|.+-+.  +      .+..|||+.+.      ..++|++++|++|||+++  +       
T Consensus        21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~------~~~~~~~~~i~~~Pt~~lf~~~~~~~~~   94 (114)
T cd02992          21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE------NVALCRDFGVTGYPTLRYFPPFSKEATD   94 (114)
T ss_pred             eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh------hHHHHHhCCCCCCCEEEEECCCCccCCC
Confidence            34678999999999999999977542  1      24578997542      258899999999999987  3       


Q ss_pred             CEEeeCC-CCHHHHHHH
Q 019491          315 GQVLSGE-QDLSDLAKA  330 (340)
Q Consensus       315 G~~y~G~-r~l~~La~~  330 (340)
                      |.+|.|. |..+++.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~  111 (114)
T cd02992          95 GLKQEGPERDVNELREA  111 (114)
T ss_pred             CCcccCCccCHHHHHHH
Confidence            3467776 888887543

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.11  E-value=2.5e-10  Score=93.02  Aligned_cols=78  Identities=10%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      +.-++.|+|+||++|+.++|.|.+.+.  ..+  -.||++.+.     +..+++++++|+++||.++  ||+   ++.|.
T Consensus        16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-----~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~   90 (103)
T cd02985          16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-----STMELCRREKIIEVPHFLFYKDGEKIHEEEGI   90 (103)
T ss_pred             CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-----HHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCC
Confidence            344778999999999999999987542  233  356665432     1358999999999999877  887   68885


Q ss_pred             CCHHHHHHHhCCC
Q 019491          322 QDLSDLAKASGFP  334 (340)
Q Consensus       322 r~l~~La~~sg~~  334 (340)
                      . .++|.+..-+.
T Consensus        91 ~-~~~l~~~~~~~  102 (103)
T cd02985          91 G-PDELIGDVLYY  102 (103)
T ss_pred             C-HHHHHHHHHhc
Confidence            4 57777765443

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.10  E-value=4.4e-10  Score=91.31  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=52.5

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh--hc----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA--VK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A--~~----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      +++|+|+|||||+.+.+.|.+-+  .+    .+..||++ +        .+++++++|+++||+.+  ||+   +..|. 
T Consensus        21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-   90 (102)
T cd02948          21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--------IDTLKRYRGKCEPTFLFYKNGELVAVIRGA-   90 (102)
T ss_pred             EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--------HHHHHHcCCCcCcEEEEEECCEEEEEEecC-
Confidence            66899999999999999997643  21    24467776 2        36799999999999887  887   57775 


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        91 ~~~~~~~~i   99 (102)
T cd02948          91 NAPLLNKTI   99 (102)
T ss_pred             ChHHHHHHH
Confidence            778887764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK09381 trxA thioredoxin; Provisional

Probab=99.10  E-value=4.5e-10  Score=91.23  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=59.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      ..-+++|+|+|||+|+.+++.|.+.+.+     .+..|||+.+        ..++++++|+++||+.+  +|+   ++.|
T Consensus        22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   93 (109)
T PRK09381         22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKVG   93 (109)
T ss_pred             CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--------hhHHHhCCCCcCCEEEEEeCCeEEEEecC
Confidence            3447789999999999999999875422     2568998754        47789999999999988  787   5789


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      ..+.++|.++.
T Consensus        94 ~~~~~~l~~~i  104 (109)
T PRK09381         94 ALSKGQLKEFL  104 (109)
T ss_pred             CCCHHHHHHHH
Confidence            99999998875

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.07  E-value=3.5e-10  Score=83.83  Aligned_cols=70  Identities=21%  Similarity=0.424  Sum_probs=54.5

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCce--eECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~y--VeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      +++|+++|||+|+++++.|.+.   .+.|  ||.+.+.  .  ...++++..++.++||++++|+.+.|. +.++|.++.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~~~--~--~~~~~~~~~~~~~vP~~~~~~~~~~g~-~~~~i~~~i   73 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK---GIAFEEIDVEKDS--A--AREEVLKVLGQRGVPVIVIGHKIIVGF-DPEKLDQLL   73 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC---CCeEEEEeccCCH--H--HHHHHHHHhCCCcccEEEECCEEEeeC-CHHHHHHHh
Confidence            5799999999999999999763   3454  4444331  1  134678889999999999999998885 779998875

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.05  E-value=6.6e-10  Score=87.64  Aligned_cols=70  Identities=26%  Similarity=0.464  Sum_probs=56.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh--hc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A--~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      +++|+|+||++|+++++.|.+.+  ++   .  +..+||+.+        .++|++++|+++||+.+  +|+   +|.|.
T Consensus        17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~   88 (102)
T TIGR01126        17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE--------KDLASRFGVSGFPTIKFFPKGKKPVDYEGG   88 (102)
T ss_pred             EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch--------HHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence            77999999999999998886643  22   2  346788654        58999999999999876  454   69999


Q ss_pred             CCHHHHHHHh
Q 019491          322 QDLSDLAKAS  331 (340)
Q Consensus       322 r~l~~La~~s  331 (340)
                      ++.++|.++.
T Consensus        89 ~~~~~l~~~i   98 (102)
T TIGR01126        89 RDLEAIVEFV   98 (102)
T ss_pred             CCHHHHHHHH
Confidence            9999998875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.04  E-value=1.1e-09  Score=83.01  Aligned_cols=73  Identities=16%  Similarity=0.295  Sum_probs=58.8

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      +.-+++|+++||++|+++++.+.+.+.  ..  +.+|||+.+        .+++++++|+++||+.+  +|+   .+.|.
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~   82 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN--------PELAEEYGVRSIPTFLFFKNGKEVDRVVGA   82 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC--------hhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence            455889999999999999999987443  23  346777653        48899999999999998  776   68999


Q ss_pred             CCHHHHHHHh
Q 019491          322 QDLSDLAKAS  331 (340)
Q Consensus       322 r~l~~La~~s  331 (340)
                      .+.++|.++.
T Consensus        83 ~~~~~l~~~i   92 (93)
T cd02947          83 DPKEELEEFL   92 (93)
T ss_pred             CCHHHHHHHh
Confidence            9989998864

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.03  E-value=1.4e-10  Score=112.49  Aligned_cols=72  Identities=15%  Similarity=0.367  Sum_probs=58.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh--hc------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--EeeCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA--VK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGE  321 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A--~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y~G~  321 (340)
                      ++-||||||.|||++.|.|.+--  .+      ++...||+.        ...+..+.||+||||.++  ||.  .|.|.
T Consensus        47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--------f~aiAnefgiqGYPTIk~~kgd~a~dYRG~  118 (468)
T KOG4277|consen   47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--------FPAIANEFGIQGYPTIKFFKGDHAIDYRGG  118 (468)
T ss_pred             EEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc--------chhhHhhhccCCCceEEEecCCeeeecCCC
Confidence            67788999999999999997621  22      345788874        468899999999999887  554  79999


Q ss_pred             CCHHHHHHHhCC
Q 019491          322 QDLSDLAKASGF  333 (340)
Q Consensus       322 r~l~~La~~sg~  333 (340)
                      |+-|+|.++.-.
T Consensus       119 R~Kd~iieFAhR  130 (468)
T KOG4277|consen  119 REKDAIIEFAHR  130 (468)
T ss_pred             ccHHHHHHHHHh
Confidence            999999988643

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.02  E-value=8.1e-10  Score=94.10  Aligned_cols=79  Identities=11%  Similarity=0.069  Sum_probs=59.1

Q ss_pred             HHHhhcccC---eEEEccCCCH--HHH--HHHHHHhHHhhc-------cCceeECCCCCCCCChhhHhhhhhCCCcccce
Q 019491          245 LAKHLHAIG---AKMYGAFWCS--HCL--EQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPT  310 (340)
Q Consensus       245 la~~L~~~g---~~~YgA~WCp--HC~--~qk~lfgk~A~~-------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPT  310 (340)
                      +.+.+++..   +++|.|+||+  ||+  .+.|.+.+.|.+       .+..|||+.+        .++|+++||+|+||
T Consensus        19 F~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--------~~La~~~~I~~iPT   90 (120)
T cd03065          19 YKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--------AKVAKKLGLDEEDS   90 (120)
T ss_pred             HHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--------HHHHHHcCCccccE
Confidence            334444444   6688888884  799  666666554432       2457888754        59999999999999


Q ss_pred             eEE--CCE--EeeCCCCHHHHHHHh
Q 019491          311 WVI--NGQ--VLSGEQDLSDLAKAS  331 (340)
Q Consensus       311 w~i--nG~--~y~G~r~l~~La~~s  331 (340)
                      +++  ||+  .|.|.++.++|.++.
T Consensus        91 l~lfk~G~~v~~~G~~~~~~l~~~l  115 (120)
T cd03065          91 IYVFKDDEVIEYDGEFAADTLVEFL  115 (120)
T ss_pred             EEEEECCEEEEeeCCCCHHHHHHHH
Confidence            887  887  599999999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.00  E-value=1.3e-09  Score=84.33  Aligned_cols=80  Identities=23%  Similarity=0.481  Sum_probs=60.7

Q ss_pred             HHHHhhccc--CeEEEccCCCHHHHHHHHHHhHHh--h---cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE-
Q 019491          244 SLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEA--V---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-  313 (340)
Q Consensus       244 ~la~~L~~~--g~~~YgA~WCpHC~~qk~lfgk~A--~---~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-  313 (340)
                      .+.+.+++.  -+++|+++||++|+++++.|.+.+  .   ..  +..|||+.+        .++|++++|+++||..+ 
T Consensus         7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02961           7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN--------NDLCSEYGVRGYPTIKLF   78 (101)
T ss_pred             HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch--------HHHHHhCCCCCCCEEEEE
Confidence            344444444  577999999999999999997743  2   22  346787753        48999999999999887 


Q ss_pred             -CC-E---EeeCCCCHHHHHHHh
Q 019491          314 -NG-Q---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       314 -nG-~---~y~G~r~l~~La~~s  331 (340)
                       +| +   +|.|.++.+++.+|.
T Consensus        79 ~~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          79 PNGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             cCCCcccccCCCCcCHHHHHhhC
Confidence             44 3   699999999998863

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK10996 thioredoxin 2; Provisional

Probab=98.99  E-value=2.5e-09  Score=92.22  Aligned_cols=73  Identities=22%  Similarity=0.335  Sum_probs=57.3

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      .-++.|+|+||++|+++++.|.+-+.   ..+.  .||++.+        .+++++++|+++||+.+  ||+   ++.|.
T Consensus        54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~--------~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~  125 (139)
T PRK10996         54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE--------RELSARFRIRSIPTIMIFKNGQVVDMLNGA  125 (139)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC--------HHHHHhcCCCccCEEEEEECCEEEEEEcCC
Confidence            34678999999999999999977432   2333  4666533        58899999999999887  887   58999


Q ss_pred             CCHHHHHHHhC
Q 019491          322 QDLSDLAKASG  332 (340)
Q Consensus       322 r~l~~La~~sg  332 (340)
                      .+.++|.++..
T Consensus       126 ~~~e~l~~~l~  136 (139)
T PRK10996        126 VPKAPFDSWLN  136 (139)
T ss_pred             CCHHHHHHHHH
Confidence            99999988753

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.2e-10  Score=114.74  Aligned_cols=75  Identities=23%  Similarity=0.428  Sum_probs=58.4

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhh--cc-----CceeECCCCCCCCChhhHhhhhhCCCcccceeEE---CCE----E
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAV--KQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----V  317 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~~-----l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~----~  317 (340)
                      --.+.||||||+||++++|.+.+.|-  +.     |+++|-+.|..          ...+|+||||+..   +++    .
T Consensus       386 dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~----------~~~~~~~fPTI~~~pag~k~~pv~  455 (493)
T KOG0190|consen  386 DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV----------PSLKVDGFPTILFFPAGHKSNPVI  455 (493)
T ss_pred             ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC----------ccccccccceEEEecCCCCCCCcc
Confidence            33678889999999999999988763  22     56888876532          2258999999887   442    6


Q ss_pred             eeCCCCHHHHHHHhCCCCC
Q 019491          318 LSGEQDLSDLAKASGFPEM  336 (340)
Q Consensus       318 y~G~r~l~~La~~sg~~g~  336 (340)
                      |.|.|++++|..++--.|.
T Consensus       456 y~g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  456 YNGDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             cCCCcchHHHHhhhccCCC
Confidence            9999999999999876654

>TIGR01068 thioredoxin thioredoxin

Probab=98.98  E-value=2e-09  Score=84.37  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=57.6

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHh--h-cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEA--V-KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A--~-~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      .-+.+|+++||++|+++++.|.+-+  . .+  +-.|||+.+        .+++++++|+++||+++  +|+   ++.|.
T Consensus        16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~   87 (101)
T TIGR01068        16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN--------PDIAAKYGIRSIPTLLLFKNGKEVDRSVGA   87 (101)
T ss_pred             cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCcCCEEEEEeCCcEeeeecCC
Confidence            3366888999999999999987643  1 12  447888754        47899999999999887  775   58899


Q ss_pred             CCHHHHHHHhC
Q 019491          322 QDLSDLAKASG  332 (340)
Q Consensus       322 r~l~~La~~sg  332 (340)
                      ++.++|.++..
T Consensus        88 ~~~~~l~~~l~   98 (101)
T TIGR01068        88 LPKAALKQLIN   98 (101)
T ss_pred             CCHHHHHHHHH
Confidence            99999988763

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.98  E-value=9.6e-10  Score=112.48  Aligned_cols=75  Identities=17%  Similarity=0.226  Sum_probs=58.1

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----Eee
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLS  319 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----~y~  319 (340)
                      .-+++|||||||||+.+++.|.+.|.+      .+..|||+.+.      ....+++++|++|||.++  ||+    +|+
T Consensus       373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~------~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~  446 (463)
T TIGR00424       373 AWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTILFFPKHSSRPIKYP  446 (463)
T ss_pred             eEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc------cHHHHHHcCCCccceEEEEECCCCCceeCC
Confidence            347789999999999999999886532      24579998652      123357899999999887  553    697


Q ss_pred             -CCCCHHHHHHHhC
Q 019491          320 -GEQDLSDLAKASG  332 (340)
Q Consensus       320 -G~r~l~~La~~sg  332 (340)
                       |.|++++|.+|++
T Consensus       447 ~g~R~~e~L~~Fv~  460 (463)
T TIGR00424       447 SEKRDVDSLMSFVN  460 (463)
T ss_pred             CCCCCHHHHHHHHH
Confidence             5899999999874

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=98.98  E-value=1.6e-09  Score=93.84  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             HHhhcccCeEEEccCCCHHHHHHHHHHhHHhh---ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE---CCE-
Q 019491          246 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ-  316 (340)
Q Consensus       246 a~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~-  316 (340)
                      +..-.+.-+++|+|+||++|+.+++.|.+.+.   ..+  -.|+.+.+.      ..+++++++|+++||+++   ||+ 
T Consensus        16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~------~~~~~~~~~V~~iPt~v~~~~~G~~   89 (142)
T cd02950          16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK------WLPEIDRYRVDGIPHFVFLDREGNE   89 (142)
T ss_pred             HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc------cHHHHHHcCCCCCCEEEEECCCCCE
Confidence            33334455778999999999999999987542   123  345554331      247899999999999886   576 


Q ss_pred             --EeeCCCCHHHHHHHhC
Q 019491          317 --VLSGEQDLSDLAKASG  332 (340)
Q Consensus       317 --~y~G~r~l~~La~~sg  332 (340)
                        ++.|..+.++|.++.-
T Consensus        90 v~~~~G~~~~~~l~~~l~  107 (142)
T cd02950          90 EGQSIGLQPKQVLAQNLD  107 (142)
T ss_pred             EEEEeCCCCHHHHHHHHH
Confidence              6899999888876654

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.97  E-value=1.5e-09  Score=107.30  Aligned_cols=73  Identities=23%  Similarity=0.399  Sum_probs=59.3

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----Ee
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VL  318 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----~y  318 (340)
                      -+++|+|+||+||+++++.|.+.|.+        .+..|||+.+        .++|++++|++|||+.+  +|+    +|
T Consensus        21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~   92 (462)
T TIGR01130        21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--------KDLAQKYGVSGYPTLKIFRNGEDSVSDY   92 (462)
T ss_pred             EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--------HHHHHhCCCccccEEEEEeCCccceeEe
Confidence            36789999999999999999764421        2457899854        48999999999999887  564    59


Q ss_pred             eCCCCHHHHHHHhCC
Q 019491          319 SGEQDLSDLAKASGF  333 (340)
Q Consensus       319 ~G~r~l~~La~~sg~  333 (340)
                      .|.++.++|.++...
T Consensus        93 ~g~~~~~~l~~~i~~  107 (462)
T TIGR01130        93 NGPRDADGIVKYMKK  107 (462)
T ss_pred             cCCCCHHHHHHHHHH
Confidence            999999999988754

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.97  E-value=3.2e-09  Score=85.05  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=55.4

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHh--h-ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEA--V-KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A--~-~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      -+++|+|+||++|+++++.+.+-+  . ..+.  .||++.        ..++.++++|+++||..+  ||+   ++.|.+
T Consensus        16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~--------~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~   87 (97)
T cd02949          16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE--------DQEIAEAAGIMGTPTVQFFKDKELVKEISGVK   87 (97)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC--------CHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence            377899999999999999886632  1 2343  455543        257899999999999887  776   689999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        88 ~~~~~~~~l   96 (97)
T cd02949          88 MKSEYREFI   96 (97)
T ss_pred             cHHHHHHhh
Confidence            999998875

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.96  E-value=2.5e-09  Score=86.34  Aligned_cols=77  Identities=16%  Similarity=0.200  Sum_probs=55.6

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHh---HHh--hc-cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE-C---CE--
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFG---SEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-N---GQ--  316 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfg---k~A--~~-~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-n---G~--  316 (340)
                      +.-+++|+|+||++|+++++.+-   +.+  .. .+.  .||++.+..    ...+++++++|+++||..+ +   |+  
T Consensus        12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~~~~~i~~~Pti~~~~~~~g~~~   87 (104)
T cd02953          12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDP----EITALLKRFGVFGPPTYLFYGPGGEPEP   87 (104)
T ss_pred             CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCH----HHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence            34477999999999999997652   211  12 333  567764321    1368999999999999887 3   54  


Q ss_pred             -EeeCCCCHHHHHHHh
Q 019491          317 -VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 -~y~G~r~l~~La~~s  331 (340)
                       ++.|.++.++|.++.
T Consensus        88 ~~~~G~~~~~~l~~~l  103 (104)
T cd02953          88 LRLPGFLTADEFLEAL  103 (104)
T ss_pred             cccccccCHHHHHHHh
Confidence             689999999998874

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.95  E-value=3.9e-08  Score=103.06  Aligned_cols=83  Identities=20%  Similarity=0.243  Sum_probs=58.5

Q ss_pred             HHhhcccCeEEEccCCCHHHHHHHHH-HhHH----hhccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE---CC
Q 019491          246 AKHLHAIGAKMYGAFWCSHCLEQKQM-FGSE----AVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NG  315 (340)
Q Consensus       246 a~~L~~~g~~~YgA~WCpHC~~qk~l-fgk~----A~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG  315 (340)
                      |+.-.+.-++.|+|+||++|+++++. |..+    +.+++.  .||.+.+.  +  +..++.++++|+|+||..+   ||
T Consensus       470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~--~--~~~~l~~~~~v~g~Pt~~~~~~~G  545 (571)
T PRK00293        470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN--A--EDVALLKHYNVLGLPTILFFDAQG  545 (571)
T ss_pred             HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC--h--hhHHHHHHcCCCCCCEEEEECCCC
Confidence            33334556778999999999999875 5322    123333  56776442  1  2468999999999999887   56


Q ss_pred             E-----EeeCCCCHHHHHHHhC
Q 019491          316 Q-----VLSGEQDLSDLAKASG  332 (340)
Q Consensus       316 ~-----~y~G~r~l~~La~~sg  332 (340)
                      +     ++.|..+.|++.++..
T Consensus       546 ~~i~~~r~~G~~~~~~f~~~L~  567 (571)
T PRK00293        546 QEIPDARVTGFMDAAAFAAHLR  567 (571)
T ss_pred             CCcccccccCCCCHHHHHHHHH
Confidence            5     4679999999987753

>PLN02309 5'-adenylylsulfate reductase

Probab=98.95  E-value=2.1e-09  Score=109.94  Aligned_cols=76  Identities=16%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhh-hCCCcccceeEE--CCE----
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NGQ----  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~-~~~I~GyPTw~i--nG~----  316 (340)
                      .+.-+++||||||+||+++++.|.+.|.+      .+..|||+.+       +.++|+ +++|++|||.++  +|.    
T Consensus       365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-------~~~la~~~~~I~~~PTil~f~~g~~~~v  437 (457)
T PLN02309        365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-------QKEFAKQELQLGSFPTILLFPKNSSRPI  437 (457)
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-------chHHHHhhCCCceeeEEEEEeCCCCCee
Confidence            34457799999999999999999886522      2457888733       247786 589999999887  443    


Q ss_pred             EeeC-CCCHHHHHHHhC
Q 019491          317 VLSG-EQDLSDLAKASG  332 (340)
Q Consensus       317 ~y~G-~r~l~~La~~sg  332 (340)
                      +|.| .|+.+.|.+|+.
T Consensus       438 ~Y~~~~R~~~~L~~fv~  454 (457)
T PLN02309        438 KYPSEKRDVDSLLSFVN  454 (457)
T ss_pred             ecCCCCcCHHHHHHHHH
Confidence            7975 699999998864

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.94  E-value=3.2e-09  Score=88.47  Aligned_cols=79  Identities=15%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             HHHhhcccC--eEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491          245 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ  316 (340)
Q Consensus       245 la~~L~~~g--~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~  316 (340)
                      +++++++..  +++|+|+|||+|+.+++.+.+-+..  ++  ..||.+.        .+++.++++|++.||..+  ||+
T Consensus        15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~--------~~~l~~~~~v~~vPt~~i~~~g~   86 (113)
T cd02975          15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE--------DKEKAEKYGVERVPTTIFLQDGG   86 (113)
T ss_pred             HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc--------CHHHHHHcCCCcCCEEEEEeCCe
Confidence            666665544  3467899999999999999875432  23  3555543        258899999999999998  322


Q ss_pred             -----EeeCCCCHHHHHHHh
Q 019491          317 -----VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 -----~y~G~r~l~~La~~s  331 (340)
                           ++.|..+-++|.++.
T Consensus        87 ~~~~~~~~G~~~~~el~~~i  106 (113)
T cd02975          87 KDGGIRYYGLPAGYEFASLI  106 (113)
T ss_pred             ecceEEEEecCchHHHHHHH
Confidence                 688988888887764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PTZ00051 thioredoxin; Provisional

Probab=98.93  E-value=4.2e-09  Score=83.47  Aligned_cols=69  Identities=19%  Similarity=0.361  Sum_probs=52.2

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      .-+.+|+|+||++|+++++.|.+.+.+  .+.  .|||+.+        .+++++++|+++||..+  ||+   ++.|. 
T Consensus        20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-   90 (98)
T PTZ00051         20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL--------SEVAEKENITSMPTFKVFKNGSVVDTLLGA-   90 (98)
T ss_pred             eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch--------HHHHHHCCCceeeEEEEEeCCeEEEEEeCC-
Confidence            446789999999999999999875432  233  5666532        58899999999999877  776   58886 


Q ss_pred             CHHHHHH
Q 019491          323 DLSDLAK  329 (340)
Q Consensus       323 ~l~~La~  329 (340)
                      ..++|.+
T Consensus        91 ~~~~~~~   97 (98)
T PTZ00051         91 NDEALKQ   97 (98)
T ss_pred             CHHHhhc
Confidence            5577654

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.93  E-value=7.9e-09  Score=91.35  Aligned_cols=71  Identities=10%  Similarity=0.228  Sum_probs=54.4

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCcc------cceeEE--CCE---
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEG------FPTWVI--NGQ---  316 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~G------yPTw~i--nG~---  316 (340)
                      +++|+|+|||||+++++.|.+.+.+      .+..|||+.+        .++|++++|++      +||.++  ||+   
T Consensus        51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~--------~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~  122 (152)
T cd02962          51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF--------PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA  122 (152)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC--------HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence            7899999999999999999875422      2357888754        48899999988      999887  887   


Q ss_pred             EeeC-----------CCCHHHHHHHhC
Q 019491          317 VLSG-----------EQDLSDLAKASG  332 (340)
Q Consensus       317 ~y~G-----------~r~l~~La~~sg  332 (340)
                      ++.|           .-+.|++.+...
T Consensus       123 r~~G~~~~~~~~~~~~~~~~~~~~~~~  149 (152)
T cd02962         123 RRPYYNDSKGRAVPFTFSKENVIRHFD  149 (152)
T ss_pred             EEeccccCccccccccccHHHHHHhcc
Confidence            4564           456677766544

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.92  E-value=7.4e-09  Score=81.76  Aligned_cols=74  Identities=24%  Similarity=0.408  Sum_probs=54.2

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      +.=+++|+|+||++|+++++.|.+.+.+   .+.++.++.+.      ..+++++++|+++||+.+  +|+   ++.|. 
T Consensus        15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-   87 (97)
T cd02984          15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE------LPEISEKFEITAVPTFVFFRNGTIVDRVSGA-   87 (97)
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc------CHHHHHhcCCccccEEEEEECCEEEEEEeCC-
Confidence            3446789999999999999999875533   34444443331      258899999999999887  787   46775 


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.+..
T Consensus        88 ~~~~l~~~~   96 (97)
T cd02984          88 DPKELAKKV   96 (97)
T ss_pred             CHHHHHHhh
Confidence            568887754

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.7e-09  Score=107.23  Aligned_cols=84  Identities=24%  Similarity=0.364  Sum_probs=67.2

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N  314 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n  314 (340)
                      ...+.-.-++..+++|+||||+||+++.+.|.+.+.  +   .+.-|||+.+        .++|++++|+||||..+  +
T Consensus        39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~--------~~~~~~y~i~gfPtl~~f~~  110 (383)
T KOG0191|consen   39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH--------KDLCEKYGIQGFPTLKVFRP  110 (383)
T ss_pred             cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh--------HHHHHhcCCccCcEEEEEcC
Confidence            344556667778999999999999999999987532  2   2557888765        58999999999999887  5


Q ss_pred             C---EEeeCCCCHHHHHHHhCC
Q 019491          315 G---QVLSGEQDLSDLAKASGF  333 (340)
Q Consensus       315 G---~~y~G~r~l~~La~~sg~  333 (340)
                      |   ..|+|.++.++++++..-
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~  132 (383)
T KOG0191|consen  111 GKKPIDYSGPRNAESLAEFLIK  132 (383)
T ss_pred             CCceeeccCcccHHHHHHHHHH
Confidence            5   269999999999987643

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.88  E-value=3.1e-09  Score=79.32  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG  320 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G  320 (340)
                      .+++|+++|||||+++++++.+.+.  ..+.+.+.+.+.      .+++.+++||++.||..+||+ ++.|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~~g   66 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEFVG   66 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEEec
Confidence            3679999999999999999976432  234443333221      247888999999999999997 4555

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PTZ00102 disulphide isomerase; Provisional

Probab=98.88  E-value=3.3e-09  Score=106.35  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=59.8

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhh--c-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E---Ee
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAV--K-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VL  318 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~---~y  318 (340)
                      .-+++|+|+||+||+++++.|.+.|.  +     .+..+||+.+.        ..|++++|++|||..+  +| +   +|
T Consensus       377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~--------~~~~~~~v~~~Pt~~~~~~~~~~~~~~  448 (477)
T PTZ00102        377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE--------TPLEEFSWSAFPTILFVKAGERTPIPY  448 (477)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc--------cchhcCCCcccCeEEEEECCCcceeEe
Confidence            34778999999999999999977542  1     24578998652        5699999999999876  33 3   68


Q ss_pred             eCCCCHHHHHHHhCCCC
Q 019491          319 SGEQDLSDLAKASGFPE  335 (340)
Q Consensus       319 ~G~r~l~~La~~sg~~g  335 (340)
                      .|.++.++|.++..-..
T Consensus       449 ~G~~~~~~l~~~i~~~~  465 (477)
T PTZ00102        449 EGERTVEGFKEFVNKHA  465 (477)
T ss_pred             cCcCCHHHHHHHHHHcC
Confidence            99999999999876544

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.87  E-value=1e-08  Score=85.48  Aligned_cols=90  Identities=13%  Similarity=0.089  Sum_probs=58.3

Q ss_pred             HHHHHHhhc-ccCeEEEccCCCHHHHHHHHHHhH------HhhccCc--eeECCCCCC-----CCChhhHhhhhhCCCcc
Q 019491          242 ALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGS------EAVKQLN--YVECFPDGY-----RKGTKIAKACSDAKIEG  307 (340)
Q Consensus       242 ~~~la~~L~-~~g~~~YgA~WCpHC~~qk~lfgk------~A~~~l~--yVeC~~~g~-----~~~~k~~~lC~~~~I~G  307 (340)
                      +++-|+.=+ +.-+++|+|+|||||+++++.+.+      ...+.+.  +||.+.+..     ....+..+++.+++|++
T Consensus         5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~   84 (125)
T cd02951           5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF   84 (125)
T ss_pred             HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence            344444444 456789999999999999986531      1112233  344442210     00011368899999999


Q ss_pred             cceeEE---C-CE---EeeCCCCHHHHHHHh
Q 019491          308 FPTWVI---N-GQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       308 yPTw~i---n-G~---~y~G~r~l~~La~~s  331 (340)
                      +||.++   + |+   ++.|..+.+++.++.
T Consensus        85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l  115 (125)
T cd02951          85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYL  115 (125)
T ss_pred             ccEEEEEcCCCCceeEEecCCCCHHHHHHHH
Confidence            999877   4 55   689999988887765

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.84  E-value=5.7e-09  Score=88.38  Aligned_cols=56  Identities=13%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc---cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ  316 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~---~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~  316 (340)
                      -++.|+|+|||+|+.++|.|.+.|.+   .+  -+||.+.+        .++.++++|++.||+.+  ||+
T Consensus        17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~--------~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954          17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV--------PDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC--------HHHHHHcCCCCCCEEEEEECCE
Confidence            46789999999999999999886533   23  35666543        58999999999999887  886

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=2.8e-09  Score=110.18  Aligned_cols=68  Identities=26%  Similarity=0.497  Sum_probs=53.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE------C---C
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI------N---G  315 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i------n---G  315 (340)
                      .++.|++.|||||++.+|.|.+-|..        ++..|||+.+. |     .++|++++|++|||+..      |   |
T Consensus        60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N-----~~lCRef~V~~~Ptlryf~~~~~~~~~G  133 (606)
T KOG1731|consen   60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-N-----VKLCREFSVSGYPTLRYFPPDSQNKTDG  133 (606)
T ss_pred             HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-h-----hhhHhhcCCCCCceeeecCCccccCcCC
Confidence            36678899999999999999986532        36789999653 4     48999999999999987      3   6


Q ss_pred             EEeeCCCCHHH
Q 019491          316 QVLSGEQDLSD  326 (340)
Q Consensus       316 ~~y~G~r~l~~  326 (340)
                      +.++|....+|
T Consensus       134 ~~~~~~~~~~e  144 (606)
T KOG1731|consen  134 SDVSGPVIPSE  144 (606)
T ss_pred             CcccCCcchhh
Confidence            77888543333

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.82  E-value=1.1e-08  Score=86.37  Aligned_cols=68  Identities=12%  Similarity=0.126  Sum_probs=56.1

Q ss_pred             eEEEccCC--CHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          254 AKMYGAFW--CSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       254 ~~~YgA~W--CpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      +++|+|.|  ||+|++++|.|.+.|.+   .  +..||++.+        .++..+++|++.||.++  ||+   ++.|.
T Consensus        31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~--------~~la~~f~V~sIPTli~fkdGk~v~~~~G~  102 (111)
T cd02965          31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE--------QALAARFGVLRTPALLFFRDGRYVGVLAGI  102 (111)
T ss_pred             EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC--------HHHHHHcCCCcCCEEEEEECCEEEEEEeCc
Confidence            67999997  99999999999886532   2  336777654        48999999999999887  897   57899


Q ss_pred             CCHHHHHH
Q 019491          322 QDLSDLAK  329 (340)
Q Consensus       322 r~l~~La~  329 (340)
                      ++.++|.+
T Consensus       103 ~~~~e~~~  110 (111)
T cd02965         103 RDWDEYVA  110 (111)
T ss_pred             cCHHHHhh
Confidence            99999864

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.81  E-value=1.4e-08  Score=79.06  Aligned_cols=68  Identities=12%  Similarity=0.246  Sum_probs=50.1

Q ss_pred             EEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCC-CCHHHHHHH
Q 019491          256 MYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGE-QDLSDLAKA  330 (340)
Q Consensus       256 ~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~-r~l~~La~~  330 (340)
                      .|+|+|||+|+.+++.|.+.+.+   .+..++.+ +        .+...++||.+.||..+||+ .++|. .+.++|.++
T Consensus         4 ~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~--------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~~   74 (76)
T TIGR00412         4 QIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT-D--------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIKEI   74 (76)
T ss_pred             EEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C--------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHHHH
Confidence            34579999999999999875432   23445544 1        24478899999999999997 57785 466899887


Q ss_pred             hC
Q 019491          331 SG  332 (340)
Q Consensus       331 sg  332 (340)
                      .+
T Consensus        75 l~   76 (76)
T TIGR00412        75 LK   76 (76)
T ss_pred             hC
Confidence            64

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.78  E-value=1.2e-08  Score=78.58  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhcc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA  328 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La  328 (340)
                      +++|+++|||+|++.++++.+.. ..  ..++|.+.+.... .-+..+-+..|+.++|+..+||+...|..++.++.
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~-i~~~~~~~~v~~~~~~~-~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~   75 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN-VKPAYEVVELDQLSNGS-EIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY   75 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC-CCCCCEEEEeeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence            47899999999999999998864 23  5678887653211 11223555679999999999999888876665554

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.78  E-value=2e-08  Score=92.13  Aligned_cols=75  Identities=11%  Similarity=0.051  Sum_probs=56.5

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEEeeCCCCHHH
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQVLSGEQDLSD  326 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~y~G~r~l~~  326 (340)
                      ...+++|+|+|||||+.+++.+.+-+.+  .+.++..+.+.      ..++++++||+++||..+  +|+++.|..+.++
T Consensus       134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~------~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~  207 (215)
T TIGR02187       134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE------NPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQ  207 (215)
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC------CHHHHHHhCCccCCEEEEecCCEEEECCCCHHH
Confidence            3346679999999999999988775432  34433333332      258899999999999998  4556999999999


Q ss_pred             HHHHh
Q 019491          327 LAKAS  331 (340)
Q Consensus       327 La~~s  331 (340)
                      |.++.
T Consensus       208 l~~~l  212 (215)
T TIGR02187       208 FLEYI  212 (215)
T ss_pred             HHHHH
Confidence            98875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.78  E-value=2.6e-08  Score=84.49  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=56.5

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCCCCCCCC---hhhHhhhhhC----CCcccceeEE--CCE--
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKG---TKIAKACSDA----KIEGFPTWVI--NGQ--  316 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~~g~~~~---~k~~~lC~~~----~I~GyPTw~i--nG~--  316 (340)
                      +..+++||++|||+|+.++|.+.+.+.   ..+-|||-+.+....-   ....++.+++    +|.|.||.++  ||+  
T Consensus        24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v  103 (122)
T TIGR01295        24 ETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV  103 (122)
T ss_pred             CcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence            445889999999999999999987542   2366888875531110   0123555554    5667999887  886  


Q ss_pred             -EeeC-CCCHHHHHHHh
Q 019491          317 -VLSG-EQDLSDLAKAS  331 (340)
Q Consensus       317 -~y~G-~r~l~~La~~s  331 (340)
                       +..| ..+.++|.++.
T Consensus       104 ~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295       104 SVRCGSSTTAQELQDIA  120 (122)
T ss_pred             EEEeCCCCCHHHHHHHh
Confidence             5778 45699998874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.75  E-value=2.4e-08  Score=91.67  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=56.7

Q ss_pred             ccCeEEEcc---CCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----E
Q 019491          251 AIGAKMYGA---FWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V  317 (340)
Q Consensus       251 ~~g~~~YgA---~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----~  317 (340)
                      ...+++|.+   +|||||+.+++.+.+.+.+  +  +..|+++.+.      ..+++++++|+++||..+  ||+    +
T Consensus        20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~------~~~l~~~~~V~~~Pt~~~f~~g~~~~~~   93 (215)
T TIGR02187        20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE------DKEEAEKYGVERVPTTIILEEGKDGGIR   93 (215)
T ss_pred             CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc------cHHHHHHcCCCccCEEEEEeCCeeeEEE
Confidence            445778888   9999999999999876432  2  3467776542      369999999999999887  553    6


Q ss_pred             eeCCCCHHHHHHH
Q 019491          318 LSGEQDLSDLAKA  330 (340)
Q Consensus       318 y~G~r~l~~La~~  330 (340)
                      +.|..+.++|.++
T Consensus        94 ~~G~~~~~~l~~~  106 (215)
T TIGR02187        94 YTGIPAGYEFAAL  106 (215)
T ss_pred             EeecCCHHHHHHH
Confidence            8899888777544

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.74  E-value=3.2e-08  Score=82.53  Aligned_cols=57  Identities=16%  Similarity=0.044  Sum_probs=44.1

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ  316 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~  316 (340)
                      .-+++|+|+||++|+.+++.+.+.+.+  .+  -+||.+.+        .++.++++|++.||..+  ||+
T Consensus        24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~--------~~l~~~~~v~~vPt~l~fk~G~   86 (113)
T cd02989          24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA--------PFLVEKLNIKVLPTVILFKNGK   86 (113)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC--------HHHHHHCCCccCCEEEEEECCE
Confidence            336688999999999999999875432  23  35665533        58899999999999887  886

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.73  E-value=1.9e-08  Score=83.16  Aligned_cols=62  Identities=15%  Similarity=0.105  Sum_probs=46.6

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      .-++.|+||||++|+.+++.|.+.|.+  .+.  .||++.        . +++++++|+++||+++  ||+   ++.|.+
T Consensus        26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~--------~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~   96 (113)
T cd02957          26 RVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK--------A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFE   96 (113)
T ss_pred             EEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh--------h-HHHHhcCCCcCCEEEEEECCEEEEEEecHH
Confidence            346789999999999999999875532  243  455542        3 7899999999999887  887   455644

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.73  E-value=3.5e-08  Score=79.49  Aligned_cols=81  Identities=17%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             HHHHHhhccc-CeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-Ee
Q 019491          243 LSLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VL  318 (340)
Q Consensus       243 ~~la~~L~~~-g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y  318 (340)
                      ++.++.|++. .+..|.++|||+|...++++.+.+..  ++.+..-+.+.      ..++.+++||.+.||..+||+ .+
T Consensus         4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~   77 (89)
T cd03026           4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFG   77 (89)
T ss_pred             HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEE
Confidence            3444566665 68899999999999999999875432  34433333221      357899999999999999998 57


Q ss_pred             eCCCCHHHHHH
Q 019491          319 SGEQDLSDLAK  329 (340)
Q Consensus       319 ~G~r~l~~La~  329 (340)
                      .|..+.+++..
T Consensus        78 ~G~~~~~e~~~   88 (89)
T cd03026          78 FGRMTLEEILA   88 (89)
T ss_pred             eCCCCHHHHhh
Confidence            89888888753

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.72  E-value=1.6e-08  Score=82.07  Aligned_cols=81  Identities=16%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhH-Hhh-c----cC--ceeECCCCCC------------CCChhhHhhhhhCCCcccce
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGS-EAV-K----QL--NYVECFPDGY------------RKGTKIAKACSDAKIEGFPT  310 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk-~A~-~----~l--~yVeC~~~g~------------~~~~k~~~lC~~~~I~GyPT  310 (340)
                      +.-+.+|++||||+|+++.+...+ .+. .    .+  -+++.+.+..            +-.....++.++.||+|+||
T Consensus         6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt   85 (112)
T PF13098_consen    6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT   85 (112)
T ss_dssp             SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence            444789999999999999775543 111 1    22  2445442210            00012357899999999999


Q ss_pred             eEE---CCE---EeeCCCCHHHHHHHh
Q 019491          311 WVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       311 w~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      +.+   +|+   ++.|-.+.++|.++.
T Consensus        86 ~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   86 IVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             EEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             EEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            998   477   789999999998763

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=7.2e-08  Score=93.45  Aligned_cols=88  Identities=19%  Similarity=0.284  Sum_probs=70.2

Q ss_pred             CchhHHHHHHhhcc-cCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCccccee
Q 019491          238 SSPFALSLAKHLHA-IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW  311 (340)
Q Consensus       238 S~~~~~~la~~L~~-~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw  311 (340)
                      +...+..+-+..++ .-++.|+||||+||+++.|...|.+..     ++.+|||+.+        +.+..++||++.||-
T Consensus        30 ~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~--------p~vAaqfgiqsIPtV  101 (304)
T COG3118          30 EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE--------PMVAAQFGVQSIPTV  101 (304)
T ss_pred             HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc--------hhHHHHhCcCcCCeE
Confidence            34555566666666 557789999999999999999885422     3789999965        588999999999996


Q ss_pred             EE--CCE---EeeCCCCHHHHHHHhCC
Q 019491          312 VI--NGQ---VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       312 ~i--nG~---~y~G~r~l~~La~~sg~  333 (340)
                      ..  +|+   -+.|.+.-+.|.+|..-
T Consensus       102 ~af~dGqpVdgF~G~qPesqlr~~ld~  128 (304)
T COG3118         102 YAFKDGQPVDGFQGAQPESQLRQFLDK  128 (304)
T ss_pred             EEeeCCcCccccCCCCcHHHHHHHHHH
Confidence            64  998   48999999999988754

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.58  E-value=1.8e-07  Score=69.17  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA  330 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~  330 (340)
                      +++|+++|||+|+++++++.+. ......+|.+.+.  .  ...++.+..++.++|+++++|+.+.|.. .++|.++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~-~i~~~~~~i~~~~--~--~~~~~~~~~~~~~vP~i~~~~~~i~g~~-~~~l~~~   72 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER-GIPFEEVDVDEDP--E--ALEELKKLNGYRSVPVVVIGDEHLSGFR-PDKLRAL   72 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC-CCCeEEEeCCCCH--H--HHHHHHHHcCCcccCEEEECCEEEecCC-HHHHHhh
Confidence            6899999999999999999763 2233456655432  1  1234444458999999999999888864 4677765

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.57  E-value=5e-08  Score=94.86  Aligned_cols=77  Identities=21%  Similarity=0.343  Sum_probs=64.2

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---c-------CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--  316 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~-------l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--  316 (340)
                      +.-++-|+|.||+--+.++|.|.+.|.+   +       .+.|||+.+        .++..++.|.-|||+++  ||+  
T Consensus        14 elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--------~~ia~ky~I~KyPTlKvfrnG~~~   85 (375)
T KOG0912|consen   14 ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--------DDIADKYHINKYPTLKVFRNGEMM   85 (375)
T ss_pred             eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--------hHHhhhhccccCceeeeeeccchh
Confidence            3446778899999999999999986532   1       458999864        58999999999999998  885  


Q ss_pred             --EeeCCCCHHHHHHHhCCCC
Q 019491          317 --VLSGEQDLSDLAKASGFPE  335 (340)
Q Consensus       317 --~y~G~r~l~~La~~sg~~g  335 (340)
                        .|.|.|+.+.|.++...+-
T Consensus        86 ~rEYRg~RsVeaL~efi~kq~  106 (375)
T KOG0912|consen   86 KREYRGQRSVEALIEFIEKQL  106 (375)
T ss_pred             hhhhccchhHHHHHHHHHHHh
Confidence              6999999999999986543

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=8.1e-08  Score=95.34  Aligned_cols=81  Identities=21%  Similarity=0.307  Sum_probs=62.7

Q ss_pred             HHhhcccCeEEEccCCCHHHHHHHHHHhHHhh-----c--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-
Q 019491          246 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV-----K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-  315 (340)
Q Consensus       246 a~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~-----~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-  315 (340)
                      .+.-++.=.++|+||||+||+++++.|.+.+.     .  .+..+||+.+        ..+|++.+|++|||.++  +| 
T Consensus       158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~--------~~~~~~~~v~~~Pt~~~f~~~~  229 (383)
T KOG0191|consen  158 VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH--------KSLASRLEVRGYPTLKLFPPGE  229 (383)
T ss_pred             hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH--------HHHhhhhcccCCceEEEecCCC
Confidence            33444555788899999999999999988652     1  2457888732        58899999999999987  33 


Q ss_pred             ---EEeeCCCCHHHHHHHhCCC
Q 019491          316 ---QVLSGEQDLSDLAKASGFP  334 (340)
Q Consensus       316 ---~~y~G~r~l~~La~~sg~~  334 (340)
                         +.|+|.|+.+.+.+++--.
T Consensus       230 ~~~~~~~~~R~~~~i~~~v~~~  251 (383)
T KOG0191|consen  230 EDIYYYSGLRDSDSIVSFVEKK  251 (383)
T ss_pred             cccccccccccHHHHHHHHHhh
Confidence               3589999999999987653

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.49  E-value=3.6e-07  Score=68.95  Aligned_cols=72  Identities=14%  Similarity=0.223  Sum_probs=47.6

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhh-CCCcccceeEECCEEeeCCCCHHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVINGQVLSGEQDLSDLAKA  330 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~-~~I~GyPTw~inG~~y~G~r~l~~La~~  330 (340)
                      +++|+++|||+|++.++.+.+. ......||.+.+...    ...+-+. .++.+.||.+++|.+.-..-+.++|++.
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-~~~~~~idi~~~~~~----~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~   74 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-GAAYEWVDIEEDEGA----ADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAK   74 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-CCceEEEeCcCCHhH----HHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHH
Confidence            6799999999999999999774 334556777654211    1121122 3899999998844334446666777654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.49  E-value=2.2e-07  Score=91.96  Aligned_cols=75  Identities=21%  Similarity=0.396  Sum_probs=57.0

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHh--h-c---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEA--V-K---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----  316 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A--~-~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-----  316 (340)
                      .-+++|+|+||+||+++++.|.+.+  . .   .  +.+|||+.+         +... .+|++|||..+  +|+     
T Consensus       366 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n---------~~~~-~~i~~~Pt~~~~~~~~~~~~~  435 (462)
T TIGR01130       366 DVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN---------DVPP-FEVEGFPTIKFVPAGKKSEPV  435 (462)
T ss_pred             eEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC---------ccCC-CCccccCEEEEEeCCCCcCce
Confidence            3377899999999999999987743  1 1   2  457888754         2233 89999999887  442     


Q ss_pred             EeeCCCCHHHHHHHhCCCCC
Q 019491          317 VLSGEQDLSDLAKASGFPEM  336 (340)
Q Consensus       317 ~y~G~r~l~~La~~sg~~g~  336 (340)
                      +|.|.++.++|.++......
T Consensus       436 ~~~g~~~~~~l~~~l~~~~~  455 (462)
T TIGR01130       436 PYDGDRTLEDFSKFIAKHAT  455 (462)
T ss_pred             EecCcCCHHHHHHHHHhcCC
Confidence            59999999999999876543

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=3.5e-07  Score=76.36  Aligned_cols=72  Identities=21%  Similarity=0.372  Sum_probs=54.4

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhcc--Cc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQ--LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~--l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      +.=++.|+|.|||-|+.++|.|.+.|.++  +.  .||+++   +     .++|++.+|++.||..+  ||+   ++.|.
T Consensus        22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~-----~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa   93 (106)
T KOG0907|consen   22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---L-----EEVAKEFNVKAMPTFVFYKGGEEVDEVVGA   93 (106)
T ss_pred             CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---C-----HhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence            44467788999999999999999987543  33  577765   2     48899999999999887  887   46676


Q ss_pred             CCHHHHHHHh
Q 019491          322 QDLSDLAKAS  331 (340)
Q Consensus       322 r~l~~La~~s  331 (340)
                      .. ++|.+..
T Consensus        94 ~~-~~l~~~i  102 (106)
T KOG0907|consen   94 NK-AELEKKI  102 (106)
T ss_pred             CH-HHHHHHH
Confidence            44 3665543

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=98.46  E-value=4.1e-07  Score=74.57  Aligned_cols=80  Identities=11%  Similarity=0.116  Sum_probs=57.5

Q ss_pred             HhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHH
Q 019491          247 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSD  326 (340)
Q Consensus       247 ~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~  326 (340)
                      +.+++..+++|+.+|||+|++.|.++.+. .....+||.+.+.... ..+..+-+..|-+.+|..+|||+..-|-.++.+
T Consensus         3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~-~i~~~~vdid~~~~~~-~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~   80 (99)
T TIGR02189         3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTL-GVNPAVHEIDKEPAGK-DIENALSRLGCSPAVPAVFVGGKLVGGLENVMA   80 (99)
T ss_pred             hhhccCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEEcCCCccHH-HHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence            45667779999999999999999999874 3345678887553211 112233344588999999999998888777665


Q ss_pred             HH
Q 019491          327 LA  328 (340)
Q Consensus       327 La  328 (340)
                      |.
T Consensus        81 l~   82 (99)
T TIGR02189        81 LH   82 (99)
T ss_pred             HH
Confidence            54

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=98.45  E-value=7e-07  Score=74.65  Aligned_cols=84  Identities=12%  Similarity=0.121  Sum_probs=59.4

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCC
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE  321 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~  321 (340)
                      .+-+.+++..+++|..+|||+|++.|.+|.+....  ...++|.+.++.+.+. +.++=+..|-+..|+.+|||+..-|-
T Consensus         5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~-~~~l~~~tG~~tVP~IfI~g~~iGG~   83 (108)
T PHA03050          5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENEL-RDYFEQITGGRTVPRIFFGKTSIGGY   83 (108)
T ss_pred             HHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHH-HHHHHHHcCCCCcCEEEECCEEEeCh
Confidence            34566777889999999999999999999774221  3456777653222111 33444556889999999999988777


Q ss_pred             CCHHHHH
Q 019491          322 QDLSDLA  328 (340)
Q Consensus       322 r~l~~La  328 (340)
                      .++.+|.
T Consensus        84 ddl~~l~   90 (108)
T PHA03050         84 SDLLEID   90 (108)
T ss_pred             HHHHHHH
Confidence            6666654

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.41  E-value=5.5e-07  Score=69.19  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      +++|+++|||+|++.++++.+. .....++|.+.+...... +..+-+..|+.++|+..+||+..-|-.++.++.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~-~~~~~~~~v~~~~~~~~~-~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~   75 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKEL-GVKPAVVELDQHEDGSEI-QDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK   75 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHc-CCCcEEEEEeCCCChHHH-HHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence            6899999999999999999985 334567777655321110 1233455689999999999988777676666653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.39  E-value=7.3e-07  Score=74.97  Aligned_cols=72  Identities=17%  Similarity=0.233  Sum_probs=48.1

Q ss_pred             hhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCCCCCCCChhhHhhhhhCCCcc--cceeEE-
Q 019491          240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI-  313 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~~g~~~~~k~~~lC~~~~I~G--yPTw~i-  313 (340)
                      ..+++.|+.-++.-++.|+|+||++|+++++.|.+.+.   ....+|-.+-+..+.     ..-+++++.|  +||..+ 
T Consensus         9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-----~~~~~~~~~g~~vPt~~f~   83 (117)
T cd02959           9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-----PKDEEFSPDGGYIPRILFL   83 (117)
T ss_pred             HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-----chhhhcccCCCccceEEEE
Confidence            45667777777777889999999999999998876422   122344443332111     2234678887  999887 


Q ss_pred             --CCE
Q 019491          314 --NGQ  316 (340)
Q Consensus       314 --nG~  316 (340)
                        +|+
T Consensus        84 ~~~Gk   88 (117)
T cd02959          84 DPSGD   88 (117)
T ss_pred             CCCCC
Confidence              564

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.38  E-value=2e-06  Score=75.61  Aligned_cols=70  Identities=14%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc--c---CceeECCCCCCCCChhhHhhhhhCCCcccceeE-E--CCE----EeeC-
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK--Q---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-I--NGQ----VLSG-  320 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~--~---l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~-i--nG~----~y~G-  320 (340)
                      ++-|||.|||+|+.+.|.+.+-|.+  .   +-.||.+.+        +++.++++|++-||.+ +  ||+    +..| 
T Consensus        27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~--------~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~   98 (142)
T PLN00410         27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV--------PDFNTMYELYDPCTVMFFFRNKHIMIDLGTGN   98 (142)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC--------HHHHHHcCccCCCcEEEEEECCeEEEEEeccc
Confidence            5678899999999999999886532  2   234666533        5999999999876655 4  776    4677 


Q ss_pred             -------CCCHHHHHHHh
Q 019491          321 -------EQDLSDLAKAS  331 (340)
Q Consensus       321 -------~r~l~~La~~s  331 (340)
                             ..+.++|.+..
T Consensus        99 ~~k~~~~~~~k~~l~~~i  116 (142)
T PLN00410         99 NNKINWALKDKQEFIDIV  116 (142)
T ss_pred             ccccccccCCHHHHHHHH
Confidence                   56777777654

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=1.2e-06  Score=77.56  Aligned_cols=86  Identities=17%  Similarity=0.184  Sum_probs=63.4

Q ss_pred             CchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhcc-----CceeECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491          238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV  312 (340)
Q Consensus       238 S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~-----l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~  312 (340)
                      |...-.+....=+..-+++|+|+||+-|+.+.|...+-+.++     +..||-+.+        .++..+++|+.+||.+
T Consensus        49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~--------~ela~~Y~I~avPtvl  120 (150)
T KOG0910|consen   49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH--------PELAEDYEISAVPTVL  120 (150)
T ss_pred             CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc--------cchHhhcceeeeeEEE
Confidence            334444444444555588999999999999999887754332     334555433        4889999999999988


Q ss_pred             E--CCE---EeeCCCCHHHHHHHh
Q 019491          313 I--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       313 i--nG~---~y~G~r~l~~La~~s  331 (340)
                      +  ||+   +.-|..+-+.|.++.
T Consensus       121 vfknGe~~d~~vG~~~~~~l~~~i  144 (150)
T KOG0910|consen  121 VFKNGEKVDRFVGAVPKEQLRSLI  144 (150)
T ss_pred             EEECCEEeeeecccCCHHHHHHHH
Confidence            7  897   578999988887764

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.36  E-value=8.3e-07  Score=69.86  Aligned_cols=73  Identities=18%  Similarity=0.358  Sum_probs=50.3

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhh--ccCce--eECCCCCCCCChhhHhhhh--hCCCcccceeEECCEEeeCCCCHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNY--VECFPDGYRKGTKIAKACS--DAKIEGFPTWVINGQVLSGEQDLSD  326 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~y--VeC~~~g~~~~~k~~~lC~--~~~I~GyPTw~inG~~y~G~r~l~~  326 (340)
                      .+++|+.+|||+|++.|+++.+...  ..++|  +|.+.++..    ..++=+  ..+++.+|+..|||+...|-.++.+
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~----~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~   77 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS----KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA   77 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH----HHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence            4789999999999999999987432  24554  555443211    122222  2356899999999999888777777


Q ss_pred             HHH
Q 019491          327 LAK  329 (340)
Q Consensus       327 La~  329 (340)
                      +.+
T Consensus        78 ~~~   80 (85)
T PRK11200         78 YVK   80 (85)
T ss_pred             HHH
Confidence            654

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.36  E-value=1.4e-06  Score=74.24  Aligned_cols=78  Identities=14%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             cCeEEEcc-------CCCHHHHHHHHHHhHHhh--c-cCceeECCCCCCC--CChhhHhhhhhCCCc-ccceeEE--CCE
Q 019491          252 IGAKMYGA-------FWCSHCLEQKQMFGSEAV--K-QLNYVECFPDGYR--KGTKIAKACSDAKIE-GFPTWVI--NGQ  316 (340)
Q Consensus       252 ~g~~~YgA-------~WCpHC~~qk~lfgk~A~--~-~l~yVeC~~~g~~--~~~k~~~lC~~~~I~-GyPTw~i--nG~  316 (340)
                      .-++.|+|       +|||+|+.+++.+.+.+.  . .+.++.++-+...  ++ +..++-++++|+ +.||+.+  +|+
T Consensus        23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d-~~~~~~~~~~I~~~iPT~~~~~~~~  101 (119)
T cd02952          23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRD-PNNPFRTDPKLTTGVPTLLRWKTPQ  101 (119)
T ss_pred             eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccC-cchhhHhccCcccCCCEEEEEcCCc
Confidence            34778889       999999999998877432  2 3555555543210  00 134778889999 9999887  677


Q ss_pred             EeeCCC--CHHHHHHH
Q 019491          317 VLSGEQ--DLSDLAKA  330 (340)
Q Consensus       317 ~y~G~r--~l~~La~~  330 (340)
                      +..|..  +.+.|..+
T Consensus       102 ~l~~~~c~~~~~~~~~  117 (119)
T cd02952         102 RLVEDECLQADLVEMF  117 (119)
T ss_pred             eecchhhcCHHHHHHh
Confidence            877776  65555554

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=98.35  E-value=7.3e-07  Score=68.79  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      +++|+.+|||+|++.+++|.+. .....++|.+.+..    .+.++-+..|..++|+.++||+..-|-.++.++.+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~di~~~~~----~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~   71 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-GVTFTEIRVDGDPA----LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR   71 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-CCCcEEEEecCCHH----HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence            4799999999999999999874 33456778775421    13444455689999999999998888777777654

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=98.33  E-value=8.3e-07  Score=69.25  Aligned_cols=68  Identities=13%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCH
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDL  324 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l  324 (340)
                      +..+++|+.+|||+|++.|.++.+. ......+|.+.+.  .   ..++-+..|.+.+|..++||+..-|-.++
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-gi~y~~idi~~~~--~---~~~~~~~~g~~~vP~i~i~g~~igG~~~l   74 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEK-GYDFEEIPLGNDA--R---GRSLRAVTGATTVPQVFIGGKLIGGSDEL   74 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHc-CCCcEEEECCCCh--H---HHHHHHHHCCCCcCeEEECCEEEcCHHHH
Confidence            4458899999999999999999764 3334467776542  1   23455557999999999999887776443

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.33  E-value=7.3e-07  Score=65.32  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=51.1

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA  328 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La  328 (340)
                      +++|+++|||+|++.++.+.+. ...+..+|...+..    ...++-+..+...+|+..+||+.+.|-.++.+|.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~-~i~~~~~di~~~~~----~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~   71 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL-GIEFEEIDILEDGE----LREELKELSGWPTVPQIFINGEFIGGYDDLKALH   71 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-CCcEEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence            6799999999999999999875 22344566654421    1234455568899999999999888876666553

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.32  E-value=1.7e-06  Score=71.90  Aligned_cols=77  Identities=21%  Similarity=0.186  Sum_probs=51.5

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhcc-Cce-------------------------eECCCCCCCCChhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-LNY-------------------------VECFPDGYRKGTKI  296 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~-l~y-------------------------VeC~~~g~~~~~k~  296 (340)
                      +.++..-.+.-+++|+|.|||+|+++.+.+.+.+.+. +..                         +.+++        +
T Consensus        18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~--------~   89 (127)
T cd03010          18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDP--------D   89 (127)
T ss_pred             ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECC--------c
Confidence            4444443444577888999999999998876643221 222                         22222        2


Q ss_pred             HhhhhhCCCcccceeE-E--CCE---EeeCCCCHHHH
Q 019491          297 AKACSDAKIEGFPTWV-I--NGQ---VLSGEQDLSDL  327 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~-i--nG~---~y~G~r~l~~L  327 (340)
                      .+++++++|+++|+.+ +  +|+   ++.|..+.++|
T Consensus        90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          90 GRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             chHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence            4778899999999644 5  676   58899887765

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.30  E-value=7.5e-07  Score=65.55  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV  317 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~  317 (340)
                      +++|+.+|||||++.|+++.+. .....++|.+.+..    .+.++-+..|..++|+.++||+.
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~-~i~y~~~dv~~~~~----~~~~l~~~~g~~~~P~v~i~g~~   59 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK-GIPYEEVDVDEDEE----AREELKELSGVRTVPQVFIDGKF   59 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TBEEEEEEGGGSHH----HHHHHHHHHSSSSSSEEEETTEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc-CCeeeEcccccchh----HHHHHHHHcCCCccCEEEECCEE
Confidence            4799999999999999999764 33456788876531    13444444599999999999974

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.27  E-value=1.7e-06  Score=65.58  Aligned_cols=71  Identities=15%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCc-ccceeEECCEEeeCCCCHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~-GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      +++|+.+|||+|++.|.++.+. .....++|.+.+.   . .+.++=+..|.. ++|+.++||+..-|-.++.+|.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~-~i~~~~i~i~~~~---~-~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~   73 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK-GVDYEEIDVDGDP---A-LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER   73 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-CCcEEEEECCCCH---H-HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence            6799999999999999999874 2234456665441   1 123444446777 99999999999988888887764

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=98.26  E-value=2.6e-06  Score=65.05  Aligned_cols=71  Identities=11%  Similarity=0.131  Sum_probs=53.4

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA  330 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~  330 (340)
                      +++|+.++||+|++.|+.+.+. .....++|.+.+.     +..+..++.|..++|+.++||+..-|..+.++|.++
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~~-~i~~~~~di~~~~-----~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~~   71 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEEH-GIAFEEINIDEQP-----EAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKAL   71 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHhc
Confidence            4799999999999999999863 3334457776542     124555667999999999988766666888888775

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=98.25  E-value=1.1e-06  Score=67.06  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=52.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA  328 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La  328 (340)
                      +++|+.+|||+|++.+.++.+. .....++|...+..    .+.++-+..+-..+|+.++||+.+-|-.++.+|.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~-gi~~~~~di~~~~~----~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~   72 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK-GLPYVEINIDIFPE----RKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE   72 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC-CCceEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence            6799999999999999999874 33455677765421    1345555567789999999999888877776653

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=98.24  E-value=2e-06  Score=68.45  Aligned_cols=74  Identities=18%  Similarity=0.275  Sum_probs=49.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCC--CcccceeEECCEEeeCCCCHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~--I~GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      +++|+.+|||+|++.|+++.+...+  .+.|.+.+-+.....  ..++-+..|  ++..|+..+||+..-|-.++.++.+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~--~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~   79 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS--KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK   79 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH--HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence            5799999999999999999875322  345544433221110  122333334  5899999999998888877777654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.22  E-value=6.3e-06  Score=71.61  Aligned_cols=90  Identities=16%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c--cC--ceeECCCCCCCC--------------ChhhHhhhh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRK--------------GTKIAKACS  301 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~l--~yVeC~~~g~~~--------------~~k~~~lC~  301 (340)
                      .+.+.+.-.+.-+.+|+|+|||+|+++.+.|.+.+.  +  .+  -.|+++.+...-              -....++++
T Consensus        53 ~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  132 (173)
T PRK03147         53 KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID  132 (173)
T ss_pred             EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence            345655434445678889999999998887766431  1  12  356665331000              001247899


Q ss_pred             hCCCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          302 DAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       302 ~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      +++|+++|+..+   ||+   .+.|..+.++|.++.
T Consensus       133 ~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l  168 (173)
T PRK03147        133 AYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL  168 (173)
T ss_pred             HcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            999999998665   676   579999999998765

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.21  E-value=2.9e-06  Score=67.63  Aligned_cols=74  Identities=16%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---cCc--eeECCCCCCCCChhhHhhhhhCCCc--ccceeEE--C--CEEe-
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--N--GQVL-  318 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~--yVeC~~~g~~~~~k~~~lC~~~~I~--GyPTw~i--n--G~~y-  318 (340)
                      ..-+.+|+++||++|++.++.|.+-|.+   ++.  +||++.+        .++++.+||+  ++||..+  +  |++| 
T Consensus        13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~--------~~~~~~~~i~~~~~P~~~~~~~~~~~k~~   84 (103)
T cd02982          13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF--------GRHLEYFGLKEEDLPVIAIINLSDGKKYL   84 (103)
T ss_pred             CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh--------HHHHHHcCCChhhCCEEEEEecccccccC
Confidence            3457789999999999999999886632   244  5666532        4789999999  9999887  4  5543 


Q ss_pred             -e-CCCCHHHHHHHhC
Q 019491          319 -S-GEQDLSDLAKASG  332 (340)
Q Consensus       319 -~-G~r~l~~La~~sg  332 (340)
                       . |..+.++|.+|..
T Consensus        85 ~~~~~~~~~~l~~fi~  100 (103)
T cd02982          85 MPEEELTAESLEEFVE  100 (103)
T ss_pred             CCccccCHHHHHHHHH
Confidence             3 3348899988863

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.20  E-value=3.5e-06  Score=75.86  Aligned_cols=70  Identities=11%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhcc--Cc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEE---eeC---
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQ--LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---LSG---  320 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~--l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~---y~G---  320 (340)
                      -++.|+|+|||+|+.+.+.+.+.|.+.  +.  .||++.        . +++.+++|++.||+.+  ||+.   +.|   
T Consensus        86 VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~--------~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~  156 (175)
T cd02987          86 VVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA--------T-GASDEFDTDALPALLVYKGGELIGNFVRVTE  156 (175)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc--------h-hhHHhCCCCCCCEEEEEECCEEEEEEechHH
Confidence            366889999999999999998876432  33  455542        2 6788999999999887  8873   222   


Q ss_pred             ----CCCHHHHHHHh
Q 019491          321 ----EQDLSDLAKAS  331 (340)
Q Consensus       321 ----~r~l~~La~~s  331 (340)
                          ..+.++|..+.
T Consensus       157 ~~g~~f~~~~le~~L  171 (175)
T cd02987         157 DLGEDFDAEDLESFL  171 (175)
T ss_pred             hcCCCCCHHHHHHHH
Confidence                44556666554

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02740 TraF-like TraF-like protein

Probab=98.18  E-value=5.8e-06  Score=79.33  Aligned_cols=89  Identities=12%  Similarity=0.097  Sum_probs=59.9

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCC---CChhhHhhhhhCCCcccceeEE---
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYR---KGTKIAKACSDAKIEGFPTWVI---  313 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~---~~~k~~~lC~~~~I~GyPTw~i---  313 (340)
                      ..+++.-.+.++++|+|.|||+|+++++.+.+-+.+   .+-.|+.+.+...   .-.....+.+++||+++||..+   
T Consensus       159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~  238 (271)
T TIGR02740       159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP  238 (271)
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence            455555567788899999999999999988664322   2335555432100   0000135688999999999887   


Q ss_pred             CCE----EeeCCCCHHHHHHHh
Q 019491          314 NGQ----VLSGEQDLSDLAKAS  331 (340)
Q Consensus       314 nG~----~y~G~r~l~~La~~s  331 (340)
                      ||+    ...|..+.++|.+..
T Consensus       239 ~~~~v~~v~~G~~s~~eL~~~i  260 (271)
T TIGR02740       239 DPNQFTPIGFGVMSADELVDRI  260 (271)
T ss_pred             CCCEEEEEEeCCCCHHHHHHHH
Confidence            343    356999999998654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=98.17  E-value=6.1e-06  Score=67.43  Aligned_cols=81  Identities=11%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             HHHHhhcccCeEEEc-----cCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491          244 SLAKHLHAIGAKMYG-----AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL  318 (340)
Q Consensus       244 ~la~~L~~~g~~~Yg-----A~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y  318 (340)
                      .+.+.+++..+++|.     +||||+|++.|++|.+. .....++|...+   .. -+..+.+..|-+.+|..+|||+..
T Consensus         4 ~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-~i~~~~~di~~~---~~-~~~~l~~~tg~~tvP~vfi~g~~i   78 (97)
T TIGR00365         4 RIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC-GVPFAYVNVLED---PE-IRQGIKEYSNWPTIPQLYVKGEFV   78 (97)
T ss_pred             HHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc-CCCEEEEECCCC---HH-HHHHHHHHhCCCCCCEEEECCEEE
Confidence            456677888888884     39999999999999774 222334555433   11 245666667889999999999988


Q ss_pred             eCCCCHHHHHH
Q 019491          319 SGEQDLSDLAK  329 (340)
Q Consensus       319 ~G~r~l~~La~  329 (340)
                      -|-.++.+|.+
T Consensus        79 GG~ddl~~l~~   89 (97)
T TIGR00365        79 GGCDIIMEMYQ   89 (97)
T ss_pred             eChHHHHHHHH
Confidence            88887777654

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.14  E-value=1.1e-05  Score=84.03  Aligned_cols=82  Identities=17%  Similarity=0.333  Sum_probs=53.4

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh----ccCceeECCCCCC----CC------------------ChhhHhhhhhCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGY----RK------------------GTKIAKACSDAK  304 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~----~~l~yVeC~~~g~----~~------------------~~k~~~lC~~~~  304 (340)
                      +.-++.|+|.|||+|+++.|.+.+.+.    +.+..|-...++.    +.                  -.+..++.++++
T Consensus        57 KpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fg  136 (521)
T PRK14018         57 KPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLN  136 (521)
T ss_pred             CEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcC
Confidence            344778889999999999988765421    1222211110000    00                  001246788999


Q ss_pred             CcccceeE-E--CCE---EeeCCCCHHHHHHHhC
Q 019491          305 IEGFPTWV-I--NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       305 I~GyPTw~-i--nG~---~y~G~r~l~~La~~sg  332 (340)
                      |+++||.. |  ||+   ++.|..+.++|.++..
T Consensus       137 V~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        137 ISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             CCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence            99999985 4  676   5899999999988766

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.13  E-value=7.1e-06  Score=70.27  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=49.1

Q ss_pred             chhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhh-----ccCceeECCCCCCCCChh--hHhhhh-hCCCcccc
Q 019491          239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-----KQLNYVECFPDGYRKGTK--IAKACS-DAKIEGFP  309 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~-----~~l~yVeC~~~g~~~~~k--~~~lC~-~~~I~GyP  309 (340)
                      ++.+++.|+.-++.=+..|+|.||+.|+.+++ .|.+...     +.+-.|.-+.+. +++..  ..++.+ .+|+.|+|
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~-~~~~~~~~~~~~~~~~~~~G~P   82 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE-RPDVDKIYMNAAQAMTGQGGWP   82 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc-CcHHHHHHHHHHHHhcCCCCCC
Confidence            45677888888888888999999999999975 6765321     223344444433 22110  011111 35999999


Q ss_pred             eeEE---CCE
Q 019491          310 TWVI---NGQ  316 (340)
Q Consensus       310 Tw~i---nG~  316 (340)
                      |+++   +|+
T Consensus        83 t~vfl~~~G~   92 (124)
T cd02955          83 LNVFLTPDLK   92 (124)
T ss_pred             EEEEECCCCC
Confidence            9888   676

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=9.6e-06  Score=64.17  Aligned_cols=73  Identities=18%  Similarity=0.356  Sum_probs=53.4

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCce--eECCCCCCCCChhhHhhhhhC-CCcccceeEECCEEeeCCCCHHHHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~y--VeC~~~g~~~~~k~~~lC~~~-~I~GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      .+.+|.-+|||+|++.|+++.+.   .++|  |+.+.+.   .+..++.-++. |.+.+|..+|||+..-|..++++|.+
T Consensus         2 ~v~iyt~~~CPyC~~ak~~L~~~---g~~~~~i~~~~~~---~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~   75 (80)
T COG0695           2 NVTIYTKPGCPYCKRAKRLLDRK---GVDYEEIDVDDDE---PEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA   75 (80)
T ss_pred             CEEEEECCCCchHHHHHHHHHHc---CCCcEEEEecCCc---HHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence            36799999999999999998863   4554  4444332   11223444444 89999999999998888889999876


Q ss_pred             Hh
Q 019491          330 AS  331 (340)
Q Consensus       330 ~s  331 (340)
                      .-
T Consensus        76 ~~   77 (80)
T COG0695          76 KG   77 (80)
T ss_pred             hc
Confidence            43

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.12  E-value=4.4e-05  Score=68.55  Aligned_cols=81  Identities=17%  Similarity=0.222  Sum_probs=50.8

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhccCc--eeECCCCCCCC-------C--------hhhHhhhhhCCCcccce-eE
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRK-------G--------TKIAKACSDAKIEGFPT-WV  312 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~--yVeC~~~g~~~-------~--------~k~~~lC~~~~I~GyPT-w~  312 (340)
                      +.-++.|+|.|||+|+++.+.+.+-+.+.+.  .|+-+.+...-       +        .+..++.+++||.++|| .+
T Consensus        69 k~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~v  148 (185)
T PRK15412         69 KPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFL  148 (185)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEE
Confidence            3446788899999999999887664322332  23321110000       0        00124667899999995 55


Q ss_pred             E--CCE---EeeCCCCHHHHHHHh
Q 019491          313 I--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       313 i--nG~---~y~G~r~l~~La~~s  331 (340)
                      |  ||+   ++.|..+.++|.+..
T Consensus       149 id~~G~i~~~~~G~~~~~~l~~~i  172 (185)
T PRK15412        149 IDGNGIIRYRHAGDLNPRVWESEI  172 (185)
T ss_pred             ECCCceEEEEEecCCCHHHHHHHH
Confidence            5  675   689999888876653

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.11  E-value=2.3e-05  Score=69.46  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhccCce-------------------------eECCCCCCCCChhhHhhhhhCCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY-------------------------VECFPDGYRKGTKIAKACSDAKI  305 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~y-------------------------VeC~~~g~~~~~k~~~lC~~~~I  305 (340)
                      +.=+.+|+|.|||+|+++.+.+.+-+.+.+..                         +.++++        .++.+++++
T Consensus        64 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~--------~~~~~~~~v  135 (173)
T TIGR00385        64 KPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN--------GKLGLDLGV  135 (173)
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCC--------CchHHhcCC
Confidence            44466888999999999988775533222221                         222222        256778999


Q ss_pred             cccce-eEE--CCE---EeeCCCCHHHHHHHh
Q 019491          306 EGFPT-WVI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       306 ~GyPT-w~i--nG~---~y~G~r~l~~La~~s  331 (340)
                      .++|| ..|  ||+   ++.|..+.++|.++.
T Consensus       136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l  167 (173)
T TIGR00385       136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGF  167 (173)
T ss_pred             eeCCeEEEEcCCceEEEEEeccCCHHHHHHHH
Confidence            99995 556  677   578999988887754

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.10  E-value=1.5e-05  Score=70.45  Aligned_cols=82  Identities=13%  Similarity=0.123  Sum_probs=51.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc-c--CceeECCCCCCC--CCh--hhHhhh-hhC---CCcccceeEE---CC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-Q--LNYVECFPDGYR--KGT--KIAKAC-SDA---KIEGFPTWVI---NG  315 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~--l~yVeC~~~g~~--~~~--k~~~lC-~~~---~I~GyPTw~i---nG  315 (340)
                      .+..++.|+|+|||+|++..|.+.+-+.+ .  +-.|+.+.+...  +..  ...+.- +.+   +|+++||..+   +|
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G  129 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT  129 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence            44458899999999999999988764322 1  224555432100  000  001222 223   8999999765   44


Q ss_pred             E----EeeCCCCHHHHHHHh
Q 019491          316 Q----VLSGEQDLSDLAKAS  331 (340)
Q Consensus       316 ~----~y~G~r~l~~La~~s  331 (340)
                      +    ++.|..+.++|.+..
T Consensus       130 ~~i~~~~~G~~s~~~l~~~I  149 (153)
T TIGR02738       130 RKAYPVLQGAVDEAELANRM  149 (153)
T ss_pred             CEEEEEeecccCHHHHHHHH
Confidence            3    478999999987653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=98.10  E-value=6.6e-06  Score=62.53  Aligned_cols=70  Identities=16%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .+++|..+|||+|++.|+++.+. ......+|.+.+.  .   ...+=+..|...+|..++||+..-|   .++|.++.
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~~-~i~~~~~~v~~~~--~---~~~~~~~~g~~~vP~ifi~g~~igg---~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQEN-GISYEEIPLGKDI--T---GRSLRAVTGAMTVPQVFIDGELIGG---SDDLEKYF   71 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHc-CCCcEEEECCCCh--h---HHHHHHHhCCCCcCeEEECCEEEeC---HHHHHHHh
Confidence            37899999999999999999874 3334567776542  1   1233344589999999999987765   56666553

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>smart00594 UAS UAS domain

Probab=98.07  E-value=1.8e-05  Score=66.68  Aligned_cols=97  Identities=19%  Similarity=0.122  Sum_probs=70.2

Q ss_pred             cccccCCCchhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhhcc-C--cee--ECCCCCCCCChhhHhhhhhCC
Q 019491          231 ETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVKQ-L--NYV--ECFPDGYRKGTKIAKACSDAK  304 (340)
Q Consensus       231 ~~~itt~S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~~~-l--~yV--eC~~~g~~~~~k~~~lC~~~~  304 (340)
                      +|.....|=..+++.|++-.+.-++++.++||+.|+++.. .|..+..++ +  +||  -++.+. ..   ..+++..++
T Consensus         8 ~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~-~e---g~~l~~~~~   83 (122)
T smart00594        8 GPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDT-SE---GQRVSQFYK   83 (122)
T ss_pred             CCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCC-hh---HHHHHHhcC
Confidence            3455666677788888888888899999999999999865 676654321 2  232  233322 11   368999999


Q ss_pred             CcccceeEE---CC-E-------EeeCCCCHHHHHHHh
Q 019491          305 IEGFPTWVI---NG-Q-------VLSGEQDLSDLAKAS  331 (340)
Q Consensus       305 I~GyPTw~i---nG-~-------~y~G~r~l~~La~~s  331 (340)
                      +++|||+.+   +| +       +++|..+.++|.+..
T Consensus        84 ~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       84 LDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             cCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            999999887   44 2       689999999998753

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.07  E-value=1.1e-05  Score=66.18  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=55.0

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCce--eECCCCC----------------CCCChhhHhhhhhCC
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDG----------------YRKGTKIAKACSDAK  304 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~y--VeC~~~g----------------~~~~~k~~~lC~~~~  304 (340)
                      ++++..-.+.-+..|+++|||+|+.+.+.+.+.+ +++..  |..+.+.                .-.+ +..++++.++
T Consensus        13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~   90 (123)
T cd03011          13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLA-ADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND-PDGVISARWG   90 (123)
T ss_pred             eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHH-hhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC-CCcHHHHhCC
Confidence            4444444455677888999999999988776532 22221  2111110                0000 1247899999


Q ss_pred             CcccceeEE---CCE--EeeCCCCHHHHHHH
Q 019491          305 IEGFPTWVI---NGQ--VLSGEQDLSDLAKA  330 (340)
Q Consensus       305 I~GyPTw~i---nG~--~y~G~r~l~~La~~  330 (340)
                      |.+.||..+   ||.  ++.|..+.++|.+.
T Consensus        91 i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~  121 (123)
T cd03011          91 VSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             CCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence            999999887   454  58899999999764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK10638 glutaredoxin 3; Provisional

Probab=98.06  E-value=8.3e-06  Score=63.96  Aligned_cols=72  Identities=19%  Similarity=0.282  Sum_probs=53.3

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      .+++|+.+|||+|++.+.++.+. ......+|.+.+.  .  .+.++-+..|...+|+.++||+..-|-.++.+|.+
T Consensus         3 ~v~ly~~~~Cp~C~~a~~~L~~~-gi~y~~~dv~~~~--~--~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~   74 (83)
T PRK10638          3 NVEIYTKATCPFCHRAKALLNSK-GVSFQEIPIDGDA--A--KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA   74 (83)
T ss_pred             cEEEEECCCChhHHHHHHHHHHc-CCCcEEEECCCCH--H--HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence            47899999999999999999874 3334467776542  1  13455666788999999999998887766655543

>PRK10329 glutaredoxin-like protein; Provisional

Probab=98.04  E-value=2.1e-05  Score=62.29  Aligned_cols=71  Identities=11%  Similarity=0.120  Sum_probs=52.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      +++|..+|||+|++.|+.+.+. ...+.++|.+.+.     +..+..++.|.+..|+.+++++... ..+.++|.++.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~-gI~~~~idi~~~~-----~~~~~~~~~g~~~vPvv~i~~~~~~-Gf~~~~l~~~~   73 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR-GFDFEMINVDRVP-----EAAETLRAQGFRQLPVVIAGDLSWS-GFRPDMINRLH   73 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCCCcCEEEECCEEEe-cCCHHHHHHHH
Confidence            6899999999999999999763 2233456666442     1234456678899999999987666 56678888765

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=98.03  E-value=8.2e-06  Score=65.41  Aligned_cols=78  Identities=12%  Similarity=0.172  Sum_probs=58.3

Q ss_pred             HhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCC
Q 019491          247 KHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE  321 (340)
Q Consensus       247 ~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~  321 (340)
                      +.+++..+++|.-     ||||+|++.|.++.+. .....++|...+.   . -+..+.+..|-+.+|+.+|||+.+-|-
T Consensus         3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~~~~---~-~~~~l~~~~g~~tvP~vfi~g~~iGG~   77 (90)
T cd03028           3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDILEDE---E-VRQGLKEYSNWPTFPQLYVNGELVGGC   77 (90)
T ss_pred             hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcCCCH---H-HHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence            4566778888843     7999999999999874 3345567765442   1 245666667889999999999998888


Q ss_pred             CCHHHHHH
Q 019491          322 QDLSDLAK  329 (340)
Q Consensus       322 r~l~~La~  329 (340)
                      .++.+|.+
T Consensus        78 ~~l~~l~~   85 (90)
T cd03028          78 DIVKEMHE   85 (90)
T ss_pred             HHHHHHHH
Confidence            88777754

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.02  E-value=1.1e-05  Score=62.59  Aligned_cols=70  Identities=24%  Similarity=0.346  Sum_probs=48.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCc-eeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeC-CCCHHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLN-YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG-EQDLSDLAKA  330 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~-yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G-~r~l~~La~~  330 (340)
                      ++.| .++||+|.++.+...+.+. ..+ .+|+.... +    +.++ .++||.+.||..|||+ ++.| .-+.++|.++
T Consensus         3 I~v~-~~~C~~C~~~~~~~~~~~~-~~~i~~ei~~~~-~----~~~~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~   74 (76)
T PF13192_consen    3 IKVF-SPGCPYCPELVQLLKEAAE-ELGIEVEIIDIE-D----FEEI-EKYGVMSVPALVINGKVVFVGRVPSKEELKEL   74 (76)
T ss_dssp             EEEE-CSSCTTHHHHHHHHHHHHH-HTTEEEEEEETT-T----HHHH-HHTT-SSSSEEEETTEEEEESS--HHHHHHHH
T ss_pred             EEEe-CCCCCCcHHHHHHHHHHHH-hcCCeEEEEEcc-C----HHHH-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHH
Confidence            4564 7779999999998877432 222 23443221 1    3455 9999999999999999 6999 8899999887


Q ss_pred             h
Q 019491          331 S  331 (340)
Q Consensus       331 s  331 (340)
                      .
T Consensus        75 l   75 (76)
T PF13192_consen   75 L   75 (76)
T ss_dssp             H
T ss_pred             h
Confidence            4

...

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.99  E-value=1.8e-05  Score=72.43  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC------
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG------  320 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G------  320 (340)
                      ++.|+|+||++|+.+.+.|.+.|.+  .+.+|..+.+         +...+++|++.||..+  ||+   ++.|      
T Consensus       106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg  176 (192)
T cd02988         106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGG  176 (192)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEEEeCchhhCC
Confidence            5678899999999999999997754  3456665533         2246799999999887  887   4555      


Q ss_pred             -CCCHHHHHHHh
Q 019491          321 -EQDLSDLAKAS  331 (340)
Q Consensus       321 -~r~l~~La~~s  331 (340)
                       ..+.++|..+.
T Consensus       177 ~~~~~~~lE~~L  188 (192)
T cd02988         177 MNTTMEDLEWLL  188 (192)
T ss_pred             CCCCHHHHHHHH
Confidence             34556666554

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=97.97  E-value=1.4e-05  Score=67.94  Aligned_cols=56  Identities=16%  Similarity=0.195  Sum_probs=43.6

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc--c-Cc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK--Q-LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ  316 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~--~-l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~  316 (340)
                      -++-|+|.|||.|+.+.|.|.+.|.+  + ..  .||.+.        .++++++++|+.-||..+  ||+
T Consensus        17 VVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--------v~dva~~y~I~amPtfvffkngk   79 (114)
T cd02986          17 LVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--------VPVYTQYFDISYIPSTIFFFNGQ   79 (114)
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--------cHHHHHhcCceeCcEEEEEECCc
Confidence            36689999999999999999987632  3 33  455553        358999999999999776  775

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=97.95  E-value=1.6e-05  Score=62.20  Aligned_cols=74  Identities=18%  Similarity=0.223  Sum_probs=47.3

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h--cc--CceeECCCC-CCCC---------C-----hhhHhhhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQ--LNYVECFPD-GYRK---------G-----TKIAKACS  301 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~--~~--l~yVeC~~~-g~~~---------~-----~k~~~lC~  301 (340)
                      +.+++...+.-+.+|++.|||+|+++.+.+.+..  .  ..  +-.|+++++ ...-         .     .+..++.+
T Consensus        12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (116)
T cd02966          12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAK   91 (116)
T ss_pred             eehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHH
Confidence            4444433556688999999999999988776642  1  12  336777653 0000         0     00147789


Q ss_pred             hCCCcccceeEE---CCE
Q 019491          302 DAKIEGFPTWVI---NGQ  316 (340)
Q Consensus       302 ~~~I~GyPTw~i---nG~  316 (340)
                      ++++.++|++.+   +|+
T Consensus        92 ~~~~~~~P~~~l~d~~g~  109 (116)
T cd02966          92 AYGVRGLPTTFLIDRDGR  109 (116)
T ss_pred             hcCcCccceEEEECCCCc
Confidence            999999999876   565

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.88  E-value=5.3e-05  Score=62.51  Aligned_cols=88  Identities=20%  Similarity=0.172  Sum_probs=64.2

Q ss_pred             hhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhhc-cC--ce--eECCCCCCCCChhhHhhhhhCCCcccceeEE
Q 019491          240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-QL--NY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI  313 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~~-~l--~y--VeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i  313 (340)
                      +.+++.|++-++.=++++.++||+.|++++. .|..+..+ .+  .|  +..+.+.  .  ...++...+++++|||+.+
T Consensus         7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~--~--e~~~~~~~~~~~~~P~~~~   82 (114)
T cd02958           7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS--S--EGQRFLQSYKVDKYPHIAI   82 (114)
T ss_pred             HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC--c--cHHHHHHHhCccCCCeEEE
Confidence            5677888888888899999999999999965 67665432 12  23  3333322  1  1358899999999999876


Q ss_pred             ----CCE---EeeCCCCHHHHHHHh
Q 019491          314 ----NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       314 ----nG~---~y~G~r~l~~La~~s  331 (340)
                          +|+   +++|..+.+++.+..
T Consensus        83 i~~~~g~~l~~~~G~~~~~~f~~~L  107 (114)
T cd02958          83 IDPRTGEVLKVWSGNITPEDLLSQL  107 (114)
T ss_pred             EeCccCcEeEEEcCCCCHHHHHHHH
Confidence                465   689999999987654

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=97.87  E-value=2e-05  Score=65.93  Aligned_cols=75  Identities=19%  Similarity=0.328  Sum_probs=47.9

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc----c--CceeECCCCCCC----------------CChhhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK----Q--LNYVECFPDGYR----------------KGTKIA  297 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~----~--l~yVeC~~~g~~----------------~~~k~~  297 (340)
                      .+.++..-.+.-+++|+|+|||+|+++.+.+.+..  .+    .  +-.|..+.+...                ......
T Consensus        10 ~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T cd03009          10 KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS   89 (131)
T ss_pred             CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence            34555555566688999999999999988876421  11    1  335555533100                001124


Q ss_pred             hhhhhCCCcccceeEE---CCE
Q 019491          298 KACSDAKIEGFPTWVI---NGQ  316 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~i---nG~  316 (340)
                      .++++++|+++||..+   ||+
T Consensus        90 ~~~~~~~v~~~P~~~lid~~G~  111 (131)
T cd03009          90 RLNRTFKIEGIPTLIILDADGE  111 (131)
T ss_pred             HHHHHcCCCCCCEEEEECCCCC
Confidence            7888999999999776   665

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.78  E-value=0.00012  Score=61.49  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .+++++.||+|.||+++||+.+.|..+.++|.+..
T Consensus       119 ~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~~~i  153 (154)
T cd03023         119 RQLARALGITGTPAFIIGDTVIPGAVPADTLKEAI  153 (154)
T ss_pred             HHHHHHcCCCcCCeEEECCEEecCCCCHHHHHHHh
Confidence            35567889999999999999999999999998764

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.78  E-value=3.9e-05  Score=59.88  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=28.2

Q ss_pred             hhHHHHHHhhcccCeEEEccCCCHHHHHHHHHH
Q 019491          240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF  272 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lf  272 (340)
                      +.+.+.|+.-++.-+++|+|.||++|+.+++.+
T Consensus         7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~   39 (82)
T PF13899_consen    7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREV   39 (82)
T ss_dssp             HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHH
Confidence            456777888888889999999999999998865

...

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.77  E-value=5.1e-05  Score=51.73  Aligned_cols=56  Identities=21%  Similarity=0.380  Sum_probs=37.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHH--hhccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSE--AVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~--A~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      +.+|++.|||||+++++.+.+.  ....+.  .++|+.+.  +   ..+...+.++.++|+.++.
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~P~~~~~   60 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP--A---LEKELKRYGVGGVPTLVVF   60 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh--H---HhhHHHhCCCccccEEEEE
Confidence            3678899999999999988863  123344  55555432  1   1122347899999999883

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PTZ00062 glutaredoxin; Provisional

Probab=97.74  E-value=0.00011  Score=68.05  Aligned_cols=62  Identities=11%  Similarity=0.019  Sum_probs=46.6

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCCHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSD  326 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~l~~  326 (340)
                      +.+|.|+|||.|+.+++.+.+.+.  ..+.++..+.+              ++|.+.||.++  ||+   ++.|.. +.+
T Consensus        21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------------~~V~~vPtfv~~~~g~~i~r~~G~~-~~~   85 (204)
T PTZ00062         21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------------DANNEYGVFEFYQNSQLINSLEGCN-TST   85 (204)
T ss_pred             EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------------cCcccceEEEEEECCEEEeeeeCCC-HHH
Confidence            557889999999999999988653  34666666422              89999999887  887   567764 566


Q ss_pred             HHHH
Q 019491          327 LAKA  330 (340)
Q Consensus       327 La~~  330 (340)
                      |...
T Consensus        86 ~~~~   89 (204)
T PTZ00062         86 LVSF   89 (204)
T ss_pred             HHHH
Confidence            6544

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.73  E-value=9.1e-05  Score=77.26  Aligned_cols=85  Identities=15%  Similarity=0.233  Sum_probs=66.0

Q ss_pred             hhHHHHHHhhc-ccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          240 PFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       240 ~~~~~la~~L~-~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      +..++..+.|+ ...+++|..++||+|.+..+...+-|..  .|.  -||.+.        ++++.++++|.+.|+.+||
T Consensus       465 ~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--------~~~~~~~~~v~~vP~~~i~  536 (555)
T TIGR03143       465 EELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--------FPDLKDEYGIMSVPAIVVD  536 (555)
T ss_pred             HHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--------cHHHHHhCCceecCEEEEC
Confidence            44555556664 5579999999999999998888765433  232  455442        3688999999999999999


Q ss_pred             CE-EeeCCCCHHHHHHHhC
Q 019491          315 GQ-VLSGEQDLSDLAKASG  332 (340)
Q Consensus       315 G~-~y~G~r~l~~La~~sg  332 (340)
                      |+ .+.|..+.+++.++.|
T Consensus       537 ~~~~~~G~~~~~~~~~~~~  555 (555)
T TIGR03143       537 DQQVYFGKKTIEEMLELIG  555 (555)
T ss_pred             CEEEEeeCCCHHHHHHhhC
Confidence            97 6999999999999876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=97.72  E-value=6.7e-05  Score=63.27  Aligned_cols=76  Identities=16%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h-c---c--CceeECCCCCC-----------------CCChh
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V-K---Q--LNYVECFPDGY-----------------RKGTK  295 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~-~---~--l~yVeC~~~g~-----------------~~~~k  295 (340)
                      ..+.+++.-.+.=++.|+|+|||+|+++.+.+.+.+  . +   .  +-+|..+.+..                 .....
T Consensus         8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~   87 (132)
T cd02964           8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL   87 (132)
T ss_pred             ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence            445566555566678899999999999988776532  1 1   2  33566654310                 00011


Q ss_pred             hHhhhhhCCCcccceeEE---CCE
Q 019491          296 IAKACSDAKIEGFPTWVI---NGQ  316 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i---nG~  316 (340)
                      ...+-+.++|.++||..+   ||+
T Consensus        88 ~~~~~~~~~v~~iPt~~lid~~G~  111 (132)
T cd02964          88 RELLEKQFKVEGIPTLVVLKPDGD  111 (132)
T ss_pred             HHHHHHHcCCCCCCEEEEECCCCC
Confidence            235667799999999876   565

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.58  E-value=8.4e-05  Score=67.12  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHH
Q 019491          296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKA  330 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~  330 (340)
                      ..+++++.||+|.||+++ ||+.+.|..+.++|.++
T Consensus       161 ~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~~  196 (197)
T cd03020         161 NLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEAL  196 (197)
T ss_pred             HHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHhh
Confidence            568899999999999999 79999999999999876

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.54  E-value=0.0025  Score=67.06  Aligned_cols=88  Identities=18%  Similarity=0.285  Sum_probs=62.2

Q ss_pred             hhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHh--hcc----CceeECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491          240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA--VKQ----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV  312 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A--~~~----l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~  312 (340)
                      .-..++|+|=++.-+.=|||.||=.||+.|+ .|.+..  .+.    +=.+|-+.|    +.+..++=+++|+-|-||.+
T Consensus       464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~----~p~~~~lLk~~~~~G~P~~~  539 (569)
T COG4232         464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN----DPAITALLKRLGVFGVPTYL  539 (569)
T ss_pred             HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC----CHHHHHHHHHcCCCCCCEEE
Confidence            3445566666556677788999999999987 575432  111    225677654    23468899999999999988


Q ss_pred             E---CCE---EeeCCCCHHHHHHHh
Q 019491          313 I---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       313 i---nG~---~y~G~r~l~~La~~s  331 (340)
                      +   +|+   ...|..+-+.+.++.
T Consensus       540 ff~~~g~e~~~l~gf~~a~~~~~~l  564 (569)
T COG4232         540 FFGPQGSEPEILTGFLTADAFLEHL  564 (569)
T ss_pred             EECCCCCcCcCCcceecHHHHHHHH
Confidence            7   454   478888888877764

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.52  E-value=0.00038  Score=63.57  Aligned_cols=77  Identities=13%  Similarity=0.074  Sum_probs=48.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc-cCc--eeECCCCCCC-----CChhhHhhhhhCCC--cccceeEE---CCE----
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR-----KGTKIAKACSDAKI--EGFPTWVI---NGQ----  316 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~-~l~--yVeC~~~g~~-----~~~k~~~lC~~~~I--~GyPTw~i---nG~----  316 (340)
                      ++.|+|.|||+|++..+.+.+-+.+ .+.  -|..+.++..     -+.+...+-+.+++  .++||-++   ||+    
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~  152 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP  152 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence            8889999999999998877664322 222  2444322100     00012345667884  79999665   675    


Q ss_pred             EeeCCCCHHHHHHH
Q 019491          317 VLSGEQDLSDLAKA  330 (340)
Q Consensus       317 ~y~G~r~l~~La~~  330 (340)
                      .+.|..+.++|.+.
T Consensus       153 ~~~G~~~~~~L~~~  166 (181)
T PRK13728        153 LLQGATDAAGFMAR  166 (181)
T ss_pred             EEECCCCHHHHHHH
Confidence            37899998888654

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=97.46  E-value=7e-05  Score=60.63  Aligned_cols=66  Identities=14%  Similarity=0.110  Sum_probs=38.7

Q ss_pred             HHHHHhh-cccCeEEEccCCCHHHHHHHHHHhHHh--h-ccCceeECCCCCCCCChhhHhhhhhCCCccccee
Q 019491          243 LSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW  311 (340)
Q Consensus       243 ~~la~~L-~~~g~~~YgA~WCpHC~~qk~lfgk~A--~-~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw  311 (340)
                      +.|+.+. .+.-+++|+++|||+|+++.+.+.+.+  . .++..|-..++. .  .+..+..+++++.+||+.
T Consensus        13 ~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~-~--~~~~~~~~~~~~~~~p~~   82 (114)
T cd02967          13 VRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGE-K--AEHQRFLKKHGLEAFPYV   82 (114)
T ss_pred             EEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCC-H--HHHHHHHHHhCCCCCcEE
Confidence            3444443 344467888999999999988886632  1 223333322111 1  124566777777777765

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.45  E-value=0.00039  Score=71.75  Aligned_cols=88  Identities=17%  Similarity=0.245  Sum_probs=68.9

Q ss_pred             chhHHHHHHhhc-ccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE
Q 019491          239 SPFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI  313 (340)
Q Consensus       239 ~~~~~~la~~L~-~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i  313 (340)
                      ++...+..+.|+ ...+++|..+.||||.+..+.+.+.|..  .|  .-||...        ++++..+++|.+.|+.++
T Consensus       104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i  175 (517)
T PRK15317        104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL--------FQDEVEARNIMAVPTVFL  175 (517)
T ss_pred             CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh--------CHhHHHhcCCcccCEEEE
Confidence            355666667774 6679999999999999999998876543  23  2344432        468899999999999999


Q ss_pred             CCE-EeeCCCCHHHHHHHhCCC
Q 019491          314 NGQ-VLSGEQDLSDLAKASGFP  334 (340)
Q Consensus       314 nG~-~y~G~r~l~~La~~sg~~  334 (340)
                      ||+ .++|..+.+++.+....+
T Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~  197 (517)
T PRK15317        176 NGEEFGQGRMTLEEILAKLDTG  197 (517)
T ss_pred             CCcEEEecCCCHHHHHHHHhcc
Confidence            986 699999999999987654

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00022  Score=68.23  Aligned_cols=60  Identities=22%  Similarity=0.407  Sum_probs=46.4

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccC----ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEE---eeCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQL----NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---LSGE  321 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l----~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~---y~G~  321 (340)
                      ++-|+|.||+.|++..|+|...+.++.    -.||.+.        .+.....+||+..||++.  ||++   ++|.
T Consensus        25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~--------c~~taa~~gV~amPTFiff~ng~kid~~qGA   93 (288)
T KOG0908|consen   25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE--------CRGTAATNGVNAMPTFIFFRNGVKIDQIQGA   93 (288)
T ss_pred             EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH--------hhchhhhcCcccCceEEEEecCeEeeeecCC
Confidence            667889999999999999999876652    3566543        245567799999999887  8874   6665

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.43  E-value=3.7e-05  Score=72.66  Aligned_cols=73  Identities=19%  Similarity=0.311  Sum_probs=56.7

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh------hccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--EeeCCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA------VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGEQD  323 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A------~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y~G~r~  323 (340)
                      ..||||||||.|++.++.|..-|      ..+++|||.+.+.        -+--.+=|...||.--  +|+  +|+|.|+
T Consensus        43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np--------gLsGRF~vtaLptIYHvkDGeFrrysgaRd  114 (248)
T KOG0913|consen   43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP--------GLSGRFLVTALPTIYHVKDGEFRRYSGARD  114 (248)
T ss_pred             HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc--------ccceeeEEEecceEEEeeccccccccCccc
Confidence            66899999999999999987654      1346799998652        3333477888999664  886  8999999


Q ss_pred             HHHHHHHhCCC
Q 019491          324 LSDLAKASGFP  334 (340)
Q Consensus       324 l~~La~~sg~~  334 (340)
                      -+++..+.-++
T Consensus       115 k~dfisf~~~r  125 (248)
T KOG0913|consen  115 KNDFISFEEHR  125 (248)
T ss_pred             chhHHHHHHhh
Confidence            99988776653

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.42  E-value=0.0004  Score=60.30  Aligned_cols=68  Identities=13%  Similarity=0.082  Sum_probs=43.1

Q ss_pred             chhHHHHHHhhcccCeEEEccCCCHHHHHHHHH-HhHHhhcc-C--cee--ECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491          239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQM-FGSEAVKQ-L--NYV--ECFPDGYRKGTKIAKACSDAKIEGFPTWV  312 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~l-fgk~A~~~-l--~yV--eC~~~g~~~~~k~~~lC~~~~I~GyPTw~  312 (340)
                      =+.+++.|+.-.+.=+++|++.|||+|+++++. |.+...++ +  .||  .-..|..+++      ....+ +++||.+
T Consensus        12 ~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~------~~~~g-~~vPtiv   84 (130)
T cd02960          12 YEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN------LSPDG-QYVPRIM   84 (130)
T ss_pred             HHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC------cCccC-cccCeEE
Confidence            356777888888888889999999999999874 65543221 2  233  3332221111      11234 7999988


Q ss_pred             E
Q 019491          313 I  313 (340)
Q Consensus       313 i  313 (340)
                      +
T Consensus        85 F   85 (130)
T cd02960          85 F   85 (130)
T ss_pred             E
Confidence            7

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.00062  Score=57.02  Aligned_cols=82  Identities=17%  Similarity=0.182  Sum_probs=61.4

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCH
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDL  324 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l  324 (340)
                      .-+-+.+..+++|.-.|||.|++.|.+|.+. ......||-|.+.+..+ -|+.+-+-.|-+.+|..+|||+-.-|..++
T Consensus         7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~-~v~~~vvELD~~~~g~e-iq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl   84 (104)
T KOG1752|consen    7 VRKMISENPVVIFSKSSCPYCHRAKELLSDL-GVNPKVVELDEDEDGSE-IQKALKKLTGQRTVPNVFIGGKFIGGASDL   84 (104)
T ss_pred             HHHHhhcCCEEEEECCcCchHHHHHHHHHhC-CCCCEEEEccCCCCcHH-HHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence            4456677789999999999999999999883 22344678876643332 255566667788999999999988777777


Q ss_pred             HHHH
Q 019491          325 SDLA  328 (340)
Q Consensus       325 ~~La  328 (340)
                      .+|.
T Consensus        85 ~~lh   88 (104)
T KOG1752|consen   85 MALH   88 (104)
T ss_pred             HHHH
Confidence            7664

>PRK10824 glutaredoxin-4; Provisional

Probab=97.32  E-value=0.00062  Score=57.93  Aligned_cols=80  Identities=14%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             HHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491          244 SLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL  318 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y  318 (340)
                      .+.+.+++..+++|-.     ||||+|++.|.+|.+. .....++|-+.+.   + -+..+=+..|-+.+|-.+|||+-.
T Consensus         7 ~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~d~---~-~~~~l~~~sg~~TVPQIFI~G~~I   81 (115)
T PRK10824          7 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQNP---D-IRAELPKYANWPTFPQLWVDGELV   81 (115)
T ss_pred             HHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecCCH---H-HHHHHHHHhCCCCCCeEEECCEEE
Confidence            4556677777888855     6999999999999874 3345567776442   1 133444446788899999999987


Q ss_pred             eCCCCHHHHH
Q 019491          319 SGEQDLSDLA  328 (340)
Q Consensus       319 ~G~r~l~~La  328 (340)
                      -|-.++.+|.
T Consensus        82 GG~ddl~~l~   91 (115)
T PRK10824         82 GGCDIVIEMY   91 (115)
T ss_pred             cChHHHHHHH
Confidence            7776666554

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=97.32  E-value=0.0004  Score=70.34  Aligned_cols=71  Identities=17%  Similarity=0.287  Sum_probs=48.6

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhh------hCCCcccceeEECCEEeeCCCCHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACS------DAKIEGFPTWVINGQVLSGEQDLSD  326 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~------~~~I~GyPTw~inG~~y~G~r~l~~  326 (340)
                      .+++|..+|||||++.|.++.+. .....+||.+.+....  ...+...      ..|.+..|+.+|||+..-|-.++.+
T Consensus         3 ~V~vys~~~Cp~C~~aK~~L~~~-gi~~~~idi~~~~~~~--~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~   79 (410)
T PRK12759          3 EVRIYTKTNCPFCDLAKSWFGAN-DIPFTQISLDDDVKRA--EFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA   79 (410)
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHC-CCCeEEEECCCChhHH--HHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence            37899999999999999999985 3334467776442110  0011122      1478899999999988877766544

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.24  E-value=0.00083  Score=51.32  Aligned_cols=68  Identities=18%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh---hc--cCceeECCCCCCC---C--------------C-------hhhHhhhhhCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA---VK--QLNYVECFPDGYR---K--------------G-------TKIAKACSDAK  304 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A---~~--~l~yVeC~~~g~~---~--------------~-------~k~~~lC~~~~  304 (340)
                      +.+|..|.||||++..+.+.+..   ..  ++.++.....+.+   .              .       .+..++.++.|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            35788999999999998887641   11  2345555433321   0              0       01235567789


Q ss_pred             CcccceeEECCEEeeCC
Q 019491          305 IEGFPTWVINGQVLSGE  321 (340)
Q Consensus       305 I~GyPTw~inG~~y~G~  321 (340)
                      |+|.||+++||++|.|.
T Consensus        81 ~~g~Pt~v~~~~~~~~~   97 (98)
T cd02972          81 VTGTPTFVVNGEKYSGA   97 (98)
T ss_pred             CCCCCEEEECCEEcCCC
Confidence            99999999999877664

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PTZ00062 glutaredoxin; Provisional

Probab=97.23  E-value=0.00084  Score=62.29  Aligned_cols=84  Identities=12%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             hHHHHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECC
Q 019491          241 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING  315 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG  315 (340)
                      ....+.+.+++..+++|--     ||||+|++.|.++.+. ......+|-..|.  .  -+..+=+..|-..+|...|||
T Consensus       102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-~i~y~~~DI~~d~--~--~~~~l~~~sg~~TvPqVfI~G  176 (204)
T PTZ00062        102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-GVKYETYNIFEDP--D--LREELKVYSNWPTYPQLYVNG  176 (204)
T ss_pred             HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-CCCEEEEEcCCCH--H--HHHHHHHHhCCCCCCeEEECC
Confidence            4455677777778888833     6999999999999874 2223345554331  1  123333445778899999999


Q ss_pred             EEeeCCCCHHHHHH
Q 019491          316 QVLSGEQDLSDLAK  329 (340)
Q Consensus       316 ~~y~G~r~l~~La~  329 (340)
                      +.+-|-.++.+|.+
T Consensus       177 ~~IGG~d~l~~l~~  190 (204)
T PTZ00062        177 ELIGGHDIIKELYE  190 (204)
T ss_pred             EEEcChHHHHHHHH
Confidence            98888877777654

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.20  E-value=0.0016  Score=58.75  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=46.3

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc-c--CceeECCCC----------CCC--CChhhHhhhhhCCCcccceeEE---
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-Q--LNYVECFPD----------GYR--KGTKIAKACSDAKIEGFPTWVI---  313 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-~--l~yVeC~~~----------g~~--~~~k~~~lC~~~~I~GyPTw~i---  313 (340)
                      .-+.+|+|+|||+|+++.+.+.+...+ .  +-.|..+..          +.+  .-....++.+++++.+.|+-.+   
T Consensus        76 ~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~  155 (189)
T TIGR02661        76 PTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQ  155 (189)
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEECC
Confidence            346688899999999998877653211 1  223331100          000  0000246778899999998655   


Q ss_pred             CCE-EeeCC-CCHHHHHHHh
Q 019491          314 NGQ-VLSGE-QDLSDLAKAS  331 (340)
Q Consensus       314 nG~-~y~G~-r~l~~La~~s  331 (340)
                      +|+ ++.|. .+.+++.++.
T Consensus       156 ~G~I~~~g~~~~~~~le~ll  175 (189)
T TIGR02661       156 DGKIRAKGLTNTREHLESLL  175 (189)
T ss_pred             CCeEEEccCCCCHHHHHHHH
Confidence            576 56665 3445555554

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.12  E-value=0.0008  Score=52.88  Aligned_cols=64  Identities=20%  Similarity=0.334  Sum_probs=37.3

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHh--hc---cC--ceeECCCCCC--------C---------CChhhHhhhhhCCCccc
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEA--VK---QL--NYVECFPDGY--------R---------KGTKIAKACSDAKIEGF  308 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A--~~---~l--~yVeC~~~g~--------~---------~~~k~~~lC~~~~I~Gy  308 (340)
                      -+.+|+|+||++|++.-+.+.+..  .+   .+  -+|.++.+..        +         ....+.++-+.++|+++
T Consensus         4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~i   83 (95)
T PF13905_consen    4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGI   83 (95)
T ss_dssp             EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSS
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcC
Confidence            367899999999999977654421  12   22  2455543300        0         00124567888899999


Q ss_pred             ceeEE---CCE
Q 019491          309 PTWVI---NGQ  316 (340)
Q Consensus       309 PTw~i---nG~  316 (340)
                      ||..+   ||+
T Consensus        84 P~~~lld~~G~   94 (95)
T PF13905_consen   84 PTLVLLDPDGK   94 (95)
T ss_dssp             SEEEEEETTSB
T ss_pred             CEEEEECCCCC
Confidence            99877   564

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.08  E-value=0.0016  Score=73.25  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc----cCceeECC-----CCCCCCC----------------hhhHhhhhhCC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECF-----PDGYRKG----------------TKIAKACSDAK  304 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~yVeC~-----~~g~~~~----------------~k~~~lC~~~~  304 (340)
                      .+.-++.|+|.|||+|++..|.+.+.+.+    .+..|.+.     .+.....                ....++-++++
T Consensus       420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~  499 (1057)
T PLN02919        420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG  499 (1057)
T ss_pred             CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence            34457789999999999999888664221    13334331     1100000                01235667899


Q ss_pred             CcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          305 IEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       305 I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      |+++||.++   ||+   ++.|+...++|.++.
T Consensus       500 V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l  532 (1057)
T PLN02919        500 VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLV  532 (1057)
T ss_pred             CCccceEEEECCCCeEEEEEecccCHHHHHHHH
Confidence            999999776   676   689998878776654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.02  E-value=0.0019  Score=66.83  Aligned_cols=86  Identities=17%  Similarity=0.311  Sum_probs=66.7

Q ss_pred             hhHHHHHHhh-cccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          240 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       240 ~~~~~la~~L-~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      +..++..+.| +...+++|..+-||||.+..+.+.+.|..  .|.  -||...        ++++..+++|.+.|+..||
T Consensus       106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i~  177 (515)
T TIGR03140       106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL--------FQDEVEALGIQGVPAVFLN  177 (515)
T ss_pred             HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh--------CHHHHHhcCCcccCEEEEC
Confidence            4566666676 45679999999999999999998776543  232  333332        4688999999999999999


Q ss_pred             CE-EeeCCCCHHHHHHHhCC
Q 019491          315 GQ-VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       315 G~-~y~G~r~l~~La~~sg~  333 (340)
                      |+ .++|..+.+++.+..+-
T Consensus       178 ~~~~~~g~~~~~~~~~~l~~  197 (515)
T TIGR03140       178 GEEFHNGRMDLAELLEKLEE  197 (515)
T ss_pred             CcEEEecCCCHHHHHHHHhh
Confidence            86 68999999999877653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.97  E-value=0.0018  Score=60.82  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHHhC
Q 019491          296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKASG  332 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~sg  332 (340)
                      +.+++++.||+|.||+++ ||+...|.++.++|.++..
T Consensus       191 ~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l~  228 (232)
T PRK10877        191 HYALGVQFGVQGTPAIVLSNGTLVPGYQGPKEMKAFLD  228 (232)
T ss_pred             hHHHHHHcCCccccEEEEcCCeEeeCCCCHHHHHHHHH
Confidence            578899999999999999 9999999999999998865

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=96.85  E-value=0.0026  Score=48.28  Aligned_cols=74  Identities=20%  Similarity=0.335  Sum_probs=46.7

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCC--CcccceeEE--CCE---EeeC--C
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVI--NGQ---VLSG--E  321 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~--I~GyPTw~i--nG~---~y~G--~  321 (340)
                      ++.|+++|||+|++.++.+.+.+.+   .+..+.++....     ..+....++  +..+|+..+  +++   .+.|  .
T Consensus        36 ~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  110 (127)
T COG0526          36 LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE-----NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKV  110 (127)
T ss_pred             EEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC-----ChHHHHHHhhhhccCCeEEEEeCcchhhhhhhccc
Confidence            3344599999999999988775422   244555543211     246677788  999999875  554   3444  5


Q ss_pred             CCHHHHHHHhC
Q 019491          322 QDLSDLAKASG  332 (340)
Q Consensus       322 r~l~~La~~sg  332 (340)
                      ...+.+....+
T Consensus       111 ~~~~~~~~~~~  121 (127)
T COG0526         111 LPKEALIDALG  121 (127)
T ss_pred             CCHHHHHHHhc
Confidence            55555554443

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.74  E-value=0.0072  Score=56.33  Aligned_cols=88  Identities=15%  Similarity=0.118  Sum_probs=58.6

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh---hccCceeECCCCC---CCCChhhHhhhhhCCCcccceeEE---
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDG---YRKGTKIAKACSDAKIEGFPTWVI---  313 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A---~~~l~yVeC~~~g---~~~~~k~~~lC~~~~I~GyPTw~i---  313 (340)
                      ..+.+.=++.|+.+|+...||+|++|.+....-+   .-.+-+|..|-.+   ..+......+.++.||+-+|+..+   
T Consensus       113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~  192 (215)
T PF13728_consen  113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP  192 (215)
T ss_pred             HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence            3344444667899999999999999998765432   2234456654210   000001246788899999999887   


Q ss_pred             CC-E---EeeCCCCHHHHHHH
Q 019491          314 NG-Q---VLSGEQDLSDLAKA  330 (340)
Q Consensus       314 nG-~---~y~G~r~l~~La~~  330 (340)
                      ++ +   .-.|..++++|.+-
T Consensus       193 ~~~~~~pv~~G~~s~~~L~~r  213 (215)
T PF13728_consen  193 NTKKWYPVSQGFMSLDELEDR  213 (215)
T ss_pred             CCCeEEEEeeecCCHHHHHHh
Confidence            44 4   36899999999863

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=96.64  E-value=0.0015  Score=57.53  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=22.0

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      ++..=.+.-+..|+|.|||-|++..|.+.+
T Consensus        20 ls~~kgk~vlL~FwAsWCppCr~e~P~L~~   49 (146)
T cd03008          20 VARLENRVLLLFFGAVVSPQCQLFAPKLKD   49 (146)
T ss_pred             HHHhCCCEEEEEEECCCChhHHHHHHHHHH
Confidence            344434455778999999999999887644

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=96.62  E-value=0.0042  Score=52.57  Aligned_cols=84  Identities=17%  Similarity=0.201  Sum_probs=49.9

Q ss_pred             hhHHHHHHhhcccCeEEEccC-CCHHHHHHHHHHhHHh----hccCceeECCCCCCCCC---------------hhhHhh
Q 019491          240 PFALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKG---------------TKIAKA  299 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA~-WCpHC~~qk~lfgk~A----~~~l~yVeC~~~g~~~~---------------~k~~~l  299 (340)
                      ...+.|++.-.+.-++.|++. |||+|+++.+.+.+.+    .+.+..|-+..+....-               ....++
T Consensus        18 g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   97 (146)
T PF08534_consen   18 GKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGAL   97 (146)
T ss_dssp             SEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHH
T ss_pred             CCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHH
Confidence            344556663344446788888 9999999988765532    12243333332211000               002367


Q ss_pred             hhhCCCc---------ccceeEE---CCE---EeeCCCC
Q 019491          300 CSDAKIE---------GFPTWVI---NGQ---VLSGEQD  323 (340)
Q Consensus       300 C~~~~I~---------GyPTw~i---nG~---~y~G~r~  323 (340)
                      .++.+++         ++|++.+   ||+   +..|..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   98 AKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             HHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             HHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence            7788988         9999876   786   4566665

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=96.58  E-value=0.0051  Score=51.25  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=23.7

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      +.++.+-.+.-+.+|+|.|||.|+++.+.+.+
T Consensus        16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~   47 (126)
T cd03012          16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTD   47 (126)
T ss_pred             cCHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence            45555544555778889999999999877655

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=96.31  E-value=0.0065  Score=53.72  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             eEEEccC------CCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC----cccceeEECCEEeeCCCC
Q 019491          254 AKMYGAF------WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----EGFPTWVINGQVLSGEQD  323 (340)
Q Consensus       254 ~~~YgA~------WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I----~GyPTw~inG~~y~G~r~  323 (340)
                      +++|..+      +||+|++.|++|.+. ...+.++|.+.+...    +.++-+..+-    ...|..+|||+-.-|..+
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~-~V~~~e~DVs~~~~~----~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de   76 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF-RVKFDERDVSMDSGF----REELRELLGAELKAVSLPRVFVDGRYLGGAEE   76 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC-CCcEEEEECCCCHHH----HHHHHHHhCCCCCCCCCCEEEECCEEEecHHH
Confidence            6799999      999999999999874 223445665543211    2233333343    689999999987777777


Q ss_pred             HHHHHH
Q 019491          324 LSDLAK  329 (340)
Q Consensus       324 l~~La~  329 (340)
                      +.+|.+
T Consensus        77 l~~L~e   82 (147)
T cd03031          77 VLRLNE   82 (147)
T ss_pred             HHHHHH
Confidence            666543

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=95.92  E-value=0.017  Score=49.97  Aligned_cols=33  Identities=18%  Similarity=0.028  Sum_probs=24.4

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~  275 (340)
                      .++|+++-.+.=+.+|+|.||| |.++.+.+.+.
T Consensus        14 ~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l   46 (152)
T cd00340          14 PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEAL   46 (152)
T ss_pred             EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHH
Confidence            3566665555557789999999 99988777653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=95.78  E-value=0.021  Score=49.81  Aligned_cols=45  Identities=16%  Similarity=0.230  Sum_probs=37.3

Q ss_pred             CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCCHHHHHHHhC
Q 019491          280 LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       280 l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~l~~La~~sg  332 (340)
                      +..||.+.+        .++.+++||+++||+.+  ||+   ++.|.++-++|.++..
T Consensus        72 ~akVDiD~~--------~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~  121 (132)
T PRK11509         72 VAIADLEQS--------EAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMR  121 (132)
T ss_pred             EEEEECCCC--------HHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHH
Confidence            456777643        59999999999999887  998   6899999999987654

>PTZ00056 glutathione peroxidase; Provisional

Probab=95.36  E-value=0.039  Score=50.52  Aligned_cols=33  Identities=6%  Similarity=0.041  Sum_probs=24.4

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      .+.|++.-.+.-++.|.|.|||.|++..+.+.+
T Consensus        31 ~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~   63 (199)
T PTZ00056         31 TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNR   63 (199)
T ss_pred             EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHH
Confidence            456666545555778999999999987776654

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=95.26  E-value=0.015  Score=52.11  Aligned_cols=69  Identities=22%  Similarity=0.450  Sum_probs=42.5

Q ss_pred             hhc-ccCeEEEccCCCHHHHHH----HHHHhHHhhc----cCceeECCCCCCC-----------------CChhhHhhhh
Q 019491          248 HLH-AIGAKMYGAFWCSHCLEQ----KQMFGSEAVK----QLNYVECFPDGYR-----------------KGTKIAKACS  301 (340)
Q Consensus       248 ~L~-~~g~~~YgA~WCpHC~~q----k~lfgk~A~~----~l~yVeC~~~g~~-----------------~~~k~~~lC~  301 (340)
                      ||. ++...+|+|.|||.|++.    |++|.+-...    .|-+|.=+.++..                 .+.+.+++++
T Consensus        30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~  109 (157)
T KOG2501|consen   30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE  109 (157)
T ss_pred             hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence            443 455668999999999987    5555543211    1223332222100                 0113568999


Q ss_pred             hCCCcccceeEE---CCE
Q 019491          302 DAKIEGFPTWVI---NGQ  316 (340)
Q Consensus       302 ~~~I~GyPTw~i---nG~  316 (340)
                      +++|.+.|++++   ||+
T Consensus       110 ky~v~~iP~l~i~~~dG~  127 (157)
T KOG2501|consen  110 KYEVKGIPALVILKPDGT  127 (157)
T ss_pred             hcccCcCceeEEecCCCC
Confidence            999999999998   674

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=95.16  E-value=0.023  Score=48.38  Aligned_cols=35  Identities=26%  Similarity=0.476  Sum_probs=31.1

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .+.+++.||+|.||.+|||+.+.|..++++|.++.
T Consensus       126 ~~~~~~~~i~~tPt~~inG~~~~~~~~~~~l~~~I  160 (162)
T PF13462_consen  126 SQLARQLGITGTPTFFINGKYVVGPYTIEELKELI  160 (162)
T ss_dssp             HHHHHHHT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred             HHHHHHcCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence            46678999999999999999999999999999875

...

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=94.88  E-value=0.081  Score=50.22  Aligned_cols=34  Identities=12%  Similarity=-0.011  Sum_probs=25.6

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      ..+.|++.-.+.-++.|+|.|||.|.++.+.+.+
T Consensus        90 ~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~  123 (236)
T PLN02399         90 KDVALSKFKGKVLLIVNVASKCGLTSSNYSELSH  123 (236)
T ss_pred             CEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHH
Confidence            3557777655566778889999999988776654

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=94.86  E-value=0.09  Score=39.46  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=39.0

Q ss_pred             EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC-CEE
Q 019491          255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV  317 (340)
Q Consensus       255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in-G~~  317 (340)
                      ++|+.+|||+|++.+-.+.+. ......++.+...  +   ..++-+...-...|+++.+ |+.
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~-gl~~e~~~v~~~~--~---~~~~~~~np~~~vP~L~~~~g~~   59 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLA-GITVELREVELKN--K---PAEMLAASPKGTVPVLVLGNGTV   59 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHc-CCCcEEEEeCCCC--C---CHHHHHHCCCCCCCEEEECCCcE
Confidence            589999999999999887753 3345556665432  1   1244344567789999995 764

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=0.048  Score=49.30  Aligned_cols=80  Identities=19%  Similarity=0.347  Sum_probs=52.5

Q ss_pred             eEEEccCCCHHHHHHHH-HHhHHh----hcc-Cc--eeECC---CCCCCCCh-----hhHhhhhhCCCcccceeEE---C
Q 019491          254 AKMYGAFWCSHCLEQKQ-MFGSEA----VKQ-LN--YVECF---PDGYRKGT-----KIAKACSDAKIEGFPTWVI---N  314 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~-lfgk~A----~~~-l~--yVeC~---~~g~~~~~-----k~~~lC~~~~I~GyPTw~i---n  314 (340)
                      +.||+.+.|+.|.++|. +|.+..    .+. +.  +++-.   +.-.+.|.     +..++.+.++|+++||+++   +
T Consensus        46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~  125 (182)
T COG2143          46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT  125 (182)
T ss_pred             EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence            66999999999999986 554432    211 22  12211   11111111     2459999999999999998   4


Q ss_pred             CE---EeeCCCCHHHHHHHhCC
Q 019491          315 GQ---VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       315 G~---~y~G~r~l~~La~~sg~  333 (340)
                      |+   ..+|=...|+......|
T Consensus       126 Gk~Il~lPGY~ppe~Fl~vlkY  147 (182)
T COG2143         126 GKTILELPGYMPPEQFLAVLKY  147 (182)
T ss_pred             CCEEEecCCCCCHHHHHHHHHH
Confidence            55   47888888888776655

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=94.83  E-value=0.13  Score=43.40  Aligned_cols=86  Identities=15%  Similarity=0.107  Sum_probs=58.5

Q ss_pred             hhHHHHHHhhcccCeEEEccC----CCHHHHHHHHHHhHHhhc-cCc----eeECCCCCCCCChhhHhhhhhCCCcccce
Q 019491          240 PFALSLAKHLHAIGAKMYGAF----WCSHCLEQKQMFGSEAVK-QLN----YVECFPDGYRKGTKIAKACSDAKIEGFPT  310 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA~----WCpHC~~qk~lfgk~A~~-~l~----yVeC~~~g~~~~~k~~~lC~~~~I~GyPT  310 (340)
                      ..+++.||+=.+.-+++++.+    ||.-|+   +.|..+... .|+    .+-++-++ ..   -.+++...++++||+
T Consensus         7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~---~~l~~~~v~~~ln~~fv~w~~dv~~-~e---g~~la~~l~~~~~P~   79 (116)
T cd02991           7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCR---NTLCAPEVIEYINTRMLFWACSVAK-PE---GYRVSQALRERTYPF   79 (116)
T ss_pred             HHHHHHHHhhCCEEEEEEeCCCCccHHHHHH---HHcCCHHHHHHHHcCEEEEEEecCC-hH---HHHHHHHhCCCCCCE
Confidence            456677887777778888899    888884   455443321 111    23333322 11   368899999999999


Q ss_pred             eEE----CCE-----EeeCCCCHHHHHHHhC
Q 019491          311 WVI----NGQ-----VLSGEQDLSDLAKASG  332 (340)
Q Consensus       311 w~i----nG~-----~y~G~r~l~~La~~sg  332 (340)
                      +.+    +++     +.+|..+.++|.+...
T Consensus        80 ~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~  110 (116)
T cd02991          80 LAMIMLKDNRMTIVGRLEGLIQPEDLINRLT  110 (116)
T ss_pred             EEEEEecCCceEEEEEEeCCCCHHHHHHHHH
Confidence            886    443     6999999999987653

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=94.79  E-value=0.077  Score=46.47  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=45.3

Q ss_pred             HHHHHh-hcccCeEEEccCCCHHHHHHHHHHhHHh--h--ccCceeECCCCCC------CCC-----------------h
Q 019491          243 LSLAKH-LHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGY------RKG-----------------T  294 (340)
Q Consensus       243 ~~la~~-L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~--~~l~yVeC~~~g~------~~~-----------------~  294 (340)
                      +.+... -.+.-+.+|++.|||+|.++.+.+.+..  .  +.+..|-...|..      ...                 .
T Consensus        17 v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D   96 (171)
T cd02969          17 YSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD   96 (171)
T ss_pred             EeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence            455554 3345577889999999998877665532  1  1244333322210      000                 0


Q ss_pred             hhHhhhhhCCCcccceeEE---CCE-EeeC
Q 019491          295 KIAKACSDAKIEGFPTWVI---NGQ-VLSG  320 (340)
Q Consensus       295 k~~~lC~~~~I~GyPTw~i---nG~-~y~G  320 (340)
                      ....+.+++||.+.|+..+   ||+ +|.|
T Consensus        97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~  126 (171)
T cd02969          97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRG  126 (171)
T ss_pred             CchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence            1235677889999998776   666 4553

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=94.56  E-value=0.094  Score=48.09  Aligned_cols=87  Identities=11%  Similarity=0.006  Sum_probs=55.9

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCc--------eeECCCCCC-------------CCCh--------h
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLN--------YVECFPDGY-------------RKGT--------K  295 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~--------yVeC~~~g~-------------~~~~--------k  295 (340)
                      .++-..+.-++-|.|-||+.|..-.|++.+-+.+.++        -|+-+.+..             ..+.        +
T Consensus        54 ~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~  133 (184)
T TIGR01626        54 SAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD  133 (184)
T ss_pred             HHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence            3444466678889999999999999988765433322        244322100             0000        0


Q ss_pred             hHhhhhhCCCccccee--EE--CCE---EeeCCCCHHHHHHHh
Q 019491          296 IAKACSDAKIEGFPTW--VI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw--~i--nG~---~y~G~r~l~~La~~s  331 (340)
                      +...-.++|++++|+-  +|  +|+   ++.|..+.+++.++.
T Consensus       134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            2345678999999665  55  676   799999999887754

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=94.56  E-value=0.1  Score=45.04  Aligned_cols=31  Identities=16%  Similarity=0.097  Sum_probs=22.6

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF  272 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lf  272 (340)
                      .+.|+++-.+.-+++|.|.|||.|++..+.+
T Consensus        14 ~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l   44 (153)
T TIGR02540        14 TVSLEKYRGKVSLVVNVASECGFTDQNYRAL   44 (153)
T ss_pred             EecHHHhCCCEEEEEEeCCCCCchhhhHHHH
Confidence            3566666555546789999999998876644

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=94.52  E-value=0.031  Score=53.09  Aligned_cols=38  Identities=24%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             hHhhhhhCCCcccceeEE-C--CE--EeeCCCCHHHHHHHhCC
Q 019491          296 IAKACSDAKIEGFPTWVI-N--GQ--VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i-n--G~--~y~G~r~l~~La~~sg~  333 (340)
                      +.++.++.||+|.||+++ |  |+  ...|-.+.++|.++.|-
T Consensus       208 n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~  250 (251)
T PRK11657        208 NQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP  250 (251)
T ss_pred             HHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence            345778899999999998 5  65  68999999999999874

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=94.34  E-value=0.2  Score=35.40  Aligned_cols=60  Identities=13%  Similarity=0.033  Sum_probs=40.5

Q ss_pred             EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEee
Q 019491          255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS  319 (340)
Q Consensus       255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~  319 (340)
                      ++|+.++||+|.+.+..+... ......++++.+....    .++=+..+-..+|++..+|+.+.
T Consensus         2 ~ly~~~~~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~~~~~~~~   61 (71)
T cd00570           2 KLYYFPGSPRSLRVRLALEEK-GLPYELVPVDLGEGEQ----EEFLALNPLGKVPVLEDGGLVLT   61 (71)
T ss_pred             EEEeCCCCccHHHHHHHHHHc-CCCcEEEEeCCCCCCC----HHHHhcCCCCCCCEEEECCEEEE
Confidence            689999999999999888763 3344566766542111    12233456778999999987654

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=94.28  E-value=0.1  Score=42.33  Aligned_cols=33  Identities=15%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             HHHHHHhhcccCeEEEccC-CCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~-WCpHC~~qk~lfgk  274 (340)
                      .+.|++.-.+.-+.+|++. |||+|+++-+.+.+
T Consensus        17 ~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~   50 (124)
T PF00578_consen   17 TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE   50 (124)
T ss_dssp             EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred             EEEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence            4566666555667777788 99999988766654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=94.26  E-value=0.072  Score=48.10  Aligned_cols=72  Identities=22%  Similarity=0.280  Sum_probs=41.6

Q ss_pred             chhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhh-ccCc--eeEC--CCCCCCCChhhHhhhhhC--------C
Q 019491          239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-KQLN--YVEC--FPDGYRKGTKIAKACSDA--------K  304 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~-~~l~--yVeC--~~~g~~~~~k~~~lC~~~--------~  304 (340)
                      ++.+.+.|+.-++.=+...|+.||.-||.+.. .|..... +.|+  ||..  |.+.      ++++-..+        |
T Consensus        26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree------~Pdid~~y~~~~~~~~~   99 (163)
T PF03190_consen   26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE------RPDIDKIYMNAVQAMSG   99 (163)
T ss_dssp             SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-------HHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc------CccHHHHHHHHHHHhcC
Confidence            46789999999999999999999999999975 7765432 2232  3333  3332      23443333        7


Q ss_pred             CcccceeEE---CCE
Q 019491          305 IEGFPTWVI---NGQ  316 (340)
Q Consensus       305 I~GyPTw~i---nG~  316 (340)
                      ..|+|+-++   +|+
T Consensus       100 ~gGwPl~vfltPdg~  114 (163)
T PF03190_consen  100 SGGWPLTVFLTPDGK  114 (163)
T ss_dssp             ---SSEEEEE-TTS-
T ss_pred             CCCCCceEEECCCCC
Confidence            889999776   776

; PDB: 3IRA_A.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=94.21  E-value=0.23  Score=47.81  Aligned_cols=86  Identities=7%  Similarity=0.008  Sum_probs=56.1

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHH---hHHhhccCceeECCCCCC---CCChhhHhhhhhCCCcccceeEE---C
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMF---GSEAVKQLNYVECFPDGY---RKGTKIAKACSDAKIEGFPTWVI---N  314 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lf---gk~A~~~l~yVeC~~~g~---~~~~k~~~lC~~~~I~GyPTw~i---n  314 (340)
                      ++.+.=++-|+.||+-.-||+|++|.+..   .++-.-.+-.|..|..+.   .+......+.++.||+-+|+..+   +
T Consensus       144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~  223 (256)
T TIGR02739       144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK  223 (256)
T ss_pred             HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence            33444466789999999999999999865   443222233555542210   00001135678899999999887   4


Q ss_pred             -CE---EeeCCCCHHHHHH
Q 019491          315 -GQ---VLSGEQDLSDLAK  329 (340)
Q Consensus       315 -G~---~y~G~r~l~~La~  329 (340)
                       ++   .-.|..+.++|.+
T Consensus       224 t~~~~pv~~G~iS~deL~~  242 (256)
T TIGR02739       224 SQKMSPLAYGFISQDELKE  242 (256)
T ss_pred             CCcEEEEeeccCCHHHHHH
Confidence             33   3589999999975

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=94.12  E-value=0.3  Score=46.87  Aligned_cols=80  Identities=16%  Similarity=0.077  Sum_probs=51.8

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc-cCceeECCCCCCC-CC----hhhHhhhhhCCCcccceeEE---C-CE---
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYR-KG----TKIAKACSDAKIEGFPTWVI---N-GQ---  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~l~yVeC~~~g~~-~~----~k~~~lC~~~~I~GyPTw~i---n-G~---  316 (340)
                      ++-|+.||+-.-||+|++|.+....-+.+ .+..+...-||.. .+    .......++.||+-+|+.++   + ++   
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p  222 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP  222 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence            56789999999999999999875443211 2433333223211 00    01123457899999999887   3 33   


Q ss_pred             EeeCCCCHHHHHH
Q 019491          317 VLSGEQDLSDLAK  329 (340)
Q Consensus       317 ~y~G~r~l~~La~  329 (340)
                      .-.|..+.++|.+
T Consensus       223 v~~G~iS~deL~~  235 (248)
T PRK13703        223 LSYGFITQDDLAK  235 (248)
T ss_pred             EeeccCCHHHHHH
Confidence            3589999999975

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=94.08  E-value=0.068  Score=46.96  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=31.7

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhC
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG  332 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg  332 (340)
                      .+..++.||.|.||++|||+.+-|...++.|.+..+
T Consensus       157 ~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~~~l~  192 (192)
T cd03022         157 TEEAIARGVFGVPTFVVDGEMFWGQDRLDMLEEALA  192 (192)
T ss_pred             HHHHHHcCCCcCCeEEECCeeecccccHHHHHHHhC
Confidence            455778899999999999999999999999988754

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=94.06  E-value=0.14  Score=42.68  Aligned_cols=88  Identities=11%  Similarity=0.005  Sum_probs=47.6

Q ss_pred             HHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHhh----ccCceeECCCCCCCCC---------------hhhHhhhhh
Q 019491          243 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGYRKG---------------TKIAKACSD  302 (340)
Q Consensus       243 ~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A~----~~l~yVeC~~~g~~~~---------------~k~~~lC~~  302 (340)
                      +.+++.-.+.-+.+|+ +.|||.|.++.+.+.+...    +.+..|-...|....-               ....++.++
T Consensus        16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~   95 (140)
T cd03017          16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA   95 (140)
T ss_pred             EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence            4555543445566666 6999999988766544211    1122222211110000               001356777


Q ss_pred             CCCccc---------ceeEE---CCE---EeeCCCCHHHHHHH
Q 019491          303 AKIEGF---------PTWVI---NGQ---VLSGEQDLSDLAKA  330 (340)
Q Consensus       303 ~~I~Gy---------PTw~i---nG~---~y~G~r~l~~La~~  330 (340)
                      +|+...         |+..+   +|+   .+.|...-+++.+.
T Consensus        96 ~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~  138 (140)
T cd03017          96 YGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV  138 (140)
T ss_pred             hCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence            888887         77665   565   57777666666553

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=93.77  E-value=0.046  Score=46.85  Aligned_cols=62  Identities=23%  Similarity=0.438  Sum_probs=30.7

Q ss_pred             ccCCCHHHHHHHHHHhHH---hhccCceeECCCC--C-CCCChhhHhhhh--hCCCcccceeEE--CCEEeeCC
Q 019491          258 GAFWCSHCLEQKQMFGSE---AVKQLNYVECFPD--G-YRKGTKIAKACS--DAKIEGFPTWVI--NGQVLSGE  321 (340)
Q Consensus       258 gA~WCpHC~~qk~lfgk~---A~~~l~yVeC~~~--g-~~~~~k~~~lC~--~~~I~GyPTw~i--nG~~y~G~  321 (340)
                      |-+|||.|.+.+|...+.   +.+...+|.|...  . +.+  +....=+  +.+|++.||++.  ++++..+.
T Consensus        34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkd--p~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~  105 (119)
T PF06110_consen   34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKD--PNNPFRTDPDLKLKGIPTLIRWETGERLVEE  105 (119)
T ss_dssp             S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC---TTSHHHH--CC---SSSEEEECTSS-EEEHH
T ss_pred             CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCC--CCCCceEcceeeeeecceEEEECCCCccchh
Confidence            447999999999876552   2223334555321  1 111  0112112  489999999886  45565554

; PDB: 1V9W_A 1WOU_A.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=93.43  E-value=0.075  Score=45.76  Aligned_cols=81  Identities=15%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             CchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE
Q 019491          238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI  313 (340)
Q Consensus       238 S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i  313 (340)
                      +.+...+++..-++..+..+..+|||.|.+.-|.|.|-|..    ++.++-=+.+   ... ..+.-. .|.+..||.++
T Consensus        29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~---~el-~~~~lt-~g~~~IP~~I~  103 (129)
T PF14595_consen   29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN---KEL-MDQYLT-NGGRSIPTFIF  103 (129)
T ss_dssp             -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH---HHH-TTTTTT--SS--SSEEEE
T ss_pred             CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC---hhH-HHHHHh-CCCeecCEEEE
Confidence            34445566666666788899999999999999999885421    2344433322   111 122222 78999999998


Q ss_pred             ---CCEE--eeCCCC
Q 019491          314 ---NGQV--LSGEQD  323 (340)
Q Consensus       314 ---nG~~--y~G~r~  323 (340)
                         +|+.  .=|+|.
T Consensus       104 ~d~~~~~lg~wgerP  118 (129)
T PF14595_consen  104 LDKDGKELGRWGERP  118 (129)
T ss_dssp             E-TT--EEEEEESS-
T ss_pred             EcCCCCEeEEEcCCC
Confidence               4553  356665

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=92.97  E-value=0.4  Score=35.67  Aligned_cols=61  Identities=18%  Similarity=-0.020  Sum_probs=39.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV  317 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~  317 (340)
                      .++|+.++||+|++.+-...+. ......++++...  +..+..++-+...-...|+++.+|..
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~   61 (74)
T cd03045           1 IDLYYLPGSPPCRAVLLTAKAL-GLELNLKEVNLMK--GEHLKPEFLKLNPQHTVPTLVDNGFV   61 (74)
T ss_pred             CEEEeCCCCCcHHHHHHHHHHc-CCCCEEEEecCcc--CCcCCHHHHhhCcCCCCCEEEECCEE
Confidence            3789999999999988877653 3345556665421  11113454455556679999888754

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=92.84  E-value=0.13  Score=45.02  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             HhhhhhCCCcccceeEECCE-EeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~La~~s  331 (340)
                      .+...+.||.|.||+++||+ .+.|.+.+++|.+..
T Consensus       157 ~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~~l  192 (193)
T PF01323_consen  157 TAEARQLGVFGVPTFVVNGKYRFFGADRLDELEDAL  192 (193)
T ss_dssp             HHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHHHH
T ss_pred             HHHHHHcCCcccCEEEECCEEEEECCCCHHHHHHHh
Confidence            45678899999999999999 899999999998764

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=92.74  E-value=0.13  Score=42.63  Aligned_cols=49  Identities=10%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK  304 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~  304 (340)
                      +++|+-|||+.|++.++.+.+. .....++|-..+.... ....++.++.|
T Consensus         1 i~iy~~~~C~~crka~~~L~~~-~i~~~~~di~~~p~s~-~eL~~~l~~~g   49 (105)
T cd03035           1 ITLYGIKNCDTVKKARKWLEAR-GVAYTFHDYRKDGLDA-ATLERWLAKVG   49 (105)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHc-CCCeEEEecccCCCCH-HHHHHHHHHhC
Confidence            4799999999999999999874 3344455555443222 22556676666

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PLN02412 probable glutathione peroxidase

Probab=92.69  E-value=0.35  Score=42.79  Aligned_cols=33  Identities=12%  Similarity=-0.034  Sum_probs=22.3

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      .+.|+..-.+.=+++|+|.|||.|+++.+.+.+
T Consensus        21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~   53 (167)
T PLN02412         21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNV   53 (167)
T ss_pred             EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHH
Confidence            455665544444567889999999987655543

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=92.65  E-value=0.15  Score=42.39  Aligned_cols=50  Identities=16%  Similarity=0.240  Sum_probs=31.7

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI  305 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I  305 (340)
                      +++|+-++||+|++.++++.+. .....++|-..+.... ....++.++.++
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~~-~el~~~~~~~~~   50 (111)
T cd03036           1 LKFYEYPKCSTCRKAKKWLDEH-GVDYTAIDIVEEPPSK-EELKKWLEKSGL   50 (111)
T ss_pred             CEEEECCCCHHHHHHHHHHHHc-CCceEEecccCCcccH-HHHHHHHHHcCC
Confidence            4799999999999999999874 2234456655443211 123455555553

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=92.57  E-value=0.34  Score=35.64  Aligned_cols=61  Identities=10%  Similarity=0.093  Sum_probs=38.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE-CCEE
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV  317 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-nG~~  317 (340)
                      .++|+.++||+|++.+-.+.+. ......++.+......  +..+.-+...-...|++++ ||+.
T Consensus         1 ~~Ly~~~~s~~~~~~~~~L~~~-~l~~~~~~v~~~~~~~--~~~~~~~~~p~~~vP~l~~~~~~~   62 (74)
T cd03051           1 MKLYDSPTAPNPRRVRIFLAEK-GIDVPLVTVDLAAGEQ--RSPEFLAKNPAGTVPVLELDDGTV   62 (74)
T ss_pred             CEEEeCCCCcchHHHHHHHHHc-CCCceEEEeecccCcc--CCHHHHhhCCCCCCCEEEeCCCCE
Confidence            3789999999999999988763 2234456665421111  1223334455667899998 5543

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=92.50  E-value=0.41  Score=35.65  Aligned_cols=59  Identities=15%  Similarity=0.254  Sum_probs=36.9

Q ss_pred             EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC-CEEeeC
Q 019491          255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVLSG  320 (340)
Q Consensus       255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in-G~~y~G  320 (340)
                      +.|+.++||+|++.+..+... ......++.+.+.  .    ...-+..+-...|+++.+ |+...+
T Consensus         2 ~Ly~~~~~p~~~rvr~~L~~~-gl~~~~~~~~~~~--~----~~~~~~~~~~~vP~L~~~~~~~l~e   61 (71)
T cd03037           2 KLYIYEHCPFCVKARMIAGLK-NIPVEQIILQNDD--E----ATPIRMIGAKQVPILEKDDGSFMAE   61 (71)
T ss_pred             ceEecCCCcHhHHHHHHHHHc-CCCeEEEECCCCc--h----HHHHHhcCCCccCEEEeCCCeEeeh
Confidence            579999999999999988763 2233445555332  1    111123344568999886 655443

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=92.39  E-value=0.25  Score=41.25  Aligned_cols=64  Identities=17%  Similarity=0.329  Sum_probs=39.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE-CCEEeeC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVLSG  320 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-nG~~y~G  320 (340)
                      +++|+-++||+|++.+.++.+. ...+.++|...+.... ....++.++.|. |+=.++- +|+.|..
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~~-~el~~l~~~~~~-~~~~lin~~~~~~k~   65 (117)
T TIGR01617         1 IKVYGSPNCTTCKKARRWLEAN-GIEYQFIDIGEDGPTR-EELLDILSLLED-GIDPLLNTRGQSYRA   65 (117)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHc-CCceEEEecCCChhhH-HHHHHHHHHcCC-CHHHheeCCCcchhh
Confidence            4689999999999999999874 3345567765443221 224455666663 2222332 6665544

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=92.36  E-value=0.23  Score=41.47  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=35.5

Q ss_pred             HHHHHhhc-ccC-eEEEccCCCHHHHHHHHHHhHHh--h--ccCceeECCCCCCCCChhhHhhhhhCCCcccce
Q 019491          243 LSLAKHLH-AIG-AKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPT  310 (340)
Q Consensus       243 ~~la~~L~-~~g-~~~YgA~WCpHC~~qk~lfgk~A--~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPT  310 (340)
                      +.+.+... +.- +.+|.+.|||.|+++.+.+.+..  .  +.+..|-+..+...   ...+..++.++ .||.
T Consensus        15 ~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~~~~-~~p~   84 (149)
T cd02970          15 VTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE---KLEAFDKGKFL-PFPV   84 (149)
T ss_pred             EchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHhcCC-CCeE
Confidence            44555543 222 44556999999999988776532  1  23444444433211   13355666666 3774

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=92.04  E-value=0.19  Score=40.97  Aligned_cols=49  Identities=8%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK  304 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~  304 (340)
                      +++|+-++||.|++.+.++.+. .....++|-..+... .....++..+.+
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~-~~~l~~~~~~~~   49 (105)
T cd02977           1 ITIYGNPNCSTSRKALAWLEEH-GIEYEFIDYLKEPPT-KEELKELLAKLG   49 (105)
T ss_pred             CEEEECCCCHHHHHHHHHHHHc-CCCcEEEeeccCCCC-HHHHHHHHHhcC
Confidence            4689999999999999999874 334556776654322 122444454444

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=91.56  E-value=0.18  Score=42.49  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=25.1

Q ss_pred             HHHHHHhhcccCeEEEccCC-CHHHHHHHHHHhHH
Q 019491          242 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE  275 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~W-CpHC~~qk~lfgk~  275 (340)
                      .+.|++.-.+.-+.+|++.| ||+|+++.+.|.+.
T Consensus        18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~   52 (143)
T cd03014          18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKE   52 (143)
T ss_pred             EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence            45666655555667778877 79999998888664

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=90.91  E-value=0.93  Score=39.91  Aligned_cols=34  Identities=12%  Similarity=0.036  Sum_probs=23.0

Q ss_pred             hHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          241 FALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      ..+.|.+...+.-+.+|+ +.|||+|..+.+.|.+
T Consensus        20 ~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~   54 (173)
T cd03015          20 KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD   54 (173)
T ss_pred             eEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence            345565554444455565 8999999998777654

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PTZ00256 glutathione peroxidase; Provisional

Probab=90.63  E-value=0.53  Score=42.18  Aligned_cols=34  Identities=12%  Similarity=0.007  Sum_probs=22.6

Q ss_pred             hHHHHHHhhcccC-eEEEccCCCHHHHHHHHHHhH
Q 019491          241 FALSLAKHLHAIG-AKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~~~g-~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      ..+.|++.-.+.- +.+|.|.|||.|++..+.+.+
T Consensus        31 ~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~   65 (183)
T PTZ00256         31 QLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVE   65 (183)
T ss_pred             CEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHH
Confidence            3456665533322 346689999999998776654

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=90.60  E-value=1.2  Score=32.83  Aligned_cols=58  Identities=12%  Similarity=0.063  Sum_probs=37.6

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV  317 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~  317 (340)
                      ++.|+.++||.|++.+-.+.+. ......++-+.+  +.   ..+.-+...-...|+++.+|..
T Consensus         1 ~~ly~~~~~~~~~~v~~~l~~~-gi~~~~~~v~~~--~~---~~~~~~~~p~~~vP~l~~~~~~   58 (73)
T cd03059           1 MTLYSGPDDVYSHRVRIVLAEK-GVSVEIIDVDPD--NP---PEDLAELNPYGTVPTLVDRDLV   58 (73)
T ss_pred             CEEEECCCChhHHHHHHHHHHc-CCccEEEEcCCC--CC---CHHHHhhCCCCCCCEEEECCEE
Confidence            3689999999999999888653 222334444432  11   1344444566789999887754

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.40  E-value=1.3  Score=42.24  Aligned_cols=65  Identities=17%  Similarity=0.401  Sum_probs=45.9

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCc------cccee
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIE------GFPTW  311 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~------GyPTw  311 (340)
                      ++++.=+..=++.|+|-|-|.|.+..|.|.+...+      +...||...        .++..++++|.      -.||.
T Consensus       138 el~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--------fpd~a~kfris~s~~srQLPT~  209 (265)
T KOG0914|consen  138 ELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--------FPDVAAKFRISLSPGSRQLPTY  209 (265)
T ss_pred             HhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--------CcChHHheeeccCcccccCCeE
Confidence            44555455557788899999999999999886433      245787753        24556777775      48998


Q ss_pred             EE--CCE
Q 019491          312 VI--NGQ  316 (340)
Q Consensus       312 ~i--nG~  316 (340)
                      ++  +|+
T Consensus       210 ilFq~gk  216 (265)
T KOG0914|consen  210 ILFQKGK  216 (265)
T ss_pred             EEEccch
Confidence            87  665

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=90.19  E-value=1.2  Score=33.69  Aligned_cols=59  Identities=15%  Similarity=0.117  Sum_probs=42.8

Q ss_pred             EEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeC
Q 019491          256 MYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG  320 (340)
Q Consensus       256 ~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G  320 (340)
                      .|+.++||+|++..-.+... .....++++++...     ..++-+...-.-.|+++.||+.+..
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~~-~i~~~~~~v~~~~~-----~~~~~~~~p~~~vPvL~~~g~~l~d   59 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEEK-GIPYELVPVDPEEK-----RPEFLKLNPKGKVPVLVDDGEVLTD   59 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHHH-TEEEEEEEEBTTST-----SHHHHHHSTTSBSSEEEETTEEEES
T ss_pred             CCCcCCChHHHHHHHHHHHc-CCeEEEeccCcccc-----hhHHHhhcccccceEEEECCEEEeC
Confidence            48999999999998877763 33455677765431     2466666777889999999886653

...

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=90.11  E-value=1  Score=33.92  Aligned_cols=53  Identities=13%  Similarity=0.192  Sum_probs=35.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      ++.|+.+.||.|++.+..+.+. ......++.++.  +    ..++ +..+-...|+++++
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~-gi~y~~~~~~~~--~----~~~~-~~~~~~~vP~l~~~   54 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYH-GIPYEVVEVNPV--S----RKEI-KWSSYKKVPILRVE   54 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC-CCceEEEECCch--h----HHHH-HHhCCCccCEEEEC
Confidence            6789999999999999887663 222334544332  1    1232 44667789999986

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=89.79  E-value=0.29  Score=43.24  Aligned_cols=34  Identities=18%  Similarity=0.076  Sum_probs=24.8

Q ss_pred             HHHHHHhhcccCeEEEccCC-CHHHHHHHHHHhHH
Q 019491          242 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE  275 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~W-CpHC~~qk~lfgk~  275 (340)
                      .+.+++.-.+.-+..|+|.| ||.|.++.+.|.+.
T Consensus        36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~   70 (167)
T PRK00522         36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQE   70 (167)
T ss_pred             EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHH
Confidence            45666654445577888988 99999998777653

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=89.68  E-value=0.48  Score=42.03  Aligned_cols=35  Identities=29%  Similarity=0.424  Sum_probs=30.2

Q ss_pred             HhhhhhCCCcccceeEECCE-EeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~La~~s  331 (340)
                      .+..++.||.|.||.++||+ ...|.++.|++.+..
T Consensus       165 ~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i  200 (201)
T cd03024         165 EARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQAL  200 (201)
T ss_pred             HHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence            45677889999999999987 689999999998764

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=89.31  E-value=2.6  Score=32.88  Aligned_cols=69  Identities=22%  Similarity=0.220  Sum_probs=52.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh-hc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECC-------EEeeCCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA-VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-------QVLSGEQD  323 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A-~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG-------~~y~G~r~  323 (340)
                      +.+|+-+-|+=|.+.++...+-+ ..  .+..||-+.|        .++-.+++. -.|-..++|       +...+..+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--------~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d   72 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--------PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD   72 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--------HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--------HHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence            57999999999999999988632 12  3668888854        367788996 699999977       57889999


Q ss_pred             HHHHHHHh
Q 019491          324 LSDLAKAS  331 (340)
Q Consensus       324 l~~La~~s  331 (340)
                      .++|.++.
T Consensus        73 ~~~L~~~L   80 (81)
T PF05768_consen   73 EEQLRAWL   80 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998864

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=88.47  E-value=1.1  Score=40.77  Aligned_cols=91  Identities=12%  Similarity=0.042  Sum_probs=50.0

Q ss_pred             hHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCC----------CCCh-------hh
Q 019491          241 FALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY----------RKGT-------KI  296 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~----------~~~~-------k~  296 (340)
                      ..+.|++...+.-+.+|+ +.|||.|..+.+.|.+..  ++  .+.  -|..+....          ..+.       ..
T Consensus        22 ~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~  101 (187)
T PRK10382         22 IEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPT  101 (187)
T ss_pred             eEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCc
Confidence            344555555454455666 999999999877665432  11  011  111111000          0000       12


Q ss_pred             HhhhhhCCC----ccc--ceeEE---CCE-----Ee--eCCCCHHHHHHHh
Q 019491          297 AKACSDAKI----EGF--PTWVI---NGQ-----VL--SGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I----~Gy--PTw~i---nG~-----~y--~G~r~l~~La~~s  331 (340)
                      .++++++|+    .|.  |+-.|   +|+     .+  ...|+.+++.+..
T Consensus       102 ~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l  152 (187)
T PRK10382        102 GALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI  152 (187)
T ss_pred             hHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence            588999998    466  87554   675     12  3447888888765

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=88.35  E-value=0.59  Score=40.21  Aligned_cols=48  Identities=10%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA  303 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~  303 (340)
                      +++|+-+|||.|++.+.++.+. .....++|-..+.... ....++.+..
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~-gi~~~~idi~~~~~~~-~eL~~~l~~~   49 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH-DIPFTERNIFSSPLTI-DEIKQILRMT   49 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-CCCcEEeeccCChhhH-HHHHHHHHHh
Confidence            5799999999999999999764 3334456654443211 1244455554

>PRK13190 putative peroxiredoxin; Provisional

Probab=88.28  E-value=1.4  Score=40.32  Aligned_cols=90  Identities=12%  Similarity=0.041  Sum_probs=51.7

Q ss_pred             HHHHHHhhcccCeE-EEccCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCC----------CCC---------hh
Q 019491          242 ALSLAKHLHAIGAK-MYGAFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY----------RKG---------TK  295 (340)
Q Consensus       242 ~~~la~~L~~~g~~-~YgA~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~----------~~~---------~k  295 (340)
                      .+.|.++-.+.-+. +|-|.|||.|..+.+.|.+..  ++  .+.  -|.++....          +.+         ..
T Consensus        19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~   98 (202)
T PRK13190         19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI   98 (202)
T ss_pred             cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC
Confidence            46677764443333 688999999998876665421  11  111  222221000          000         01


Q ss_pred             hHhhhhhCCCc------ccceeEE---CCEE-------eeCCCCHHHHHHHh
Q 019491          296 IAKACSDAKIE------GFPTWVI---NGQV-------LSGEQDLSDLAKAS  331 (340)
Q Consensus       296 ~~~lC~~~~I~------GyPTw~i---nG~~-------y~G~r~l~~La~~s  331 (340)
                      ..++++++|+.      .+|+-+|   +|+.       ..+.|+.+||.+..
T Consensus        99 ~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l  150 (202)
T PRK13190         99 DKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT  150 (202)
T ss_pred             ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence            24788889984      5898665   6762       15679999997765

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=88.18  E-value=0.56  Score=39.50  Aligned_cols=34  Identities=6%  Similarity=0.059  Sum_probs=22.5

Q ss_pred             hHHHHHHhhc-ccCeEEE-ccCCCHHHHHHHHHHhH
Q 019491          241 FALSLAKHLH-AIGAKMY-GAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~-~~g~~~Y-gA~WCpHC~~qk~lfgk  274 (340)
                      ..+.+.+... +.-+..| .+.|||.|.++.+.+.+
T Consensus        18 ~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~   53 (149)
T cd03018          18 QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD   53 (149)
T ss_pred             CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence            3566766544 3334444 49999999988766644

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.04  E-value=0.53  Score=40.82  Aligned_cols=62  Identities=23%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHHHHhHH---hhccCceeECCCCCCCCC--hhhHhhhhhCCC-cccceeEE-C--CEEeeCCC
Q 019491          260 FWCSHCLEQKQMFGSE---AVKQLNYVECFPDGYRKG--TKIAKACSDAKI-EGFPTWVI-N--GQVLSGEQ  322 (340)
Q Consensus       260 ~WCpHC~~qk~lfgk~---A~~~l~yVeC~~~g~~~~--~k~~~lC~~~~I-~GyPTw~i-n--G~~y~G~r  322 (340)
                      +|||.|.+..|.+.+.   |.++..+|-|+... +..  ++....=++.++ .+.||+.- +  ++|..|.|
T Consensus        43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~-rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q  113 (128)
T KOG3425|consen   43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN-RPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQ  113 (128)
T ss_pred             cCCchHHHhhHHHHHHHHhCCCceEEEEEEecC-CCcccCCCCccccCCCceeecceeeEEcCccccchHhH
Confidence            5999999999998763   22344555554221 100  011233345667 99999765 3  33555543

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.17  E-value=0.82  Score=42.22  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=33.3

Q ss_pred             hHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhC
Q 019491          296 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG  332 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg  332 (340)
                      ..++.++.||+|-||.++||+.|.|..++++|.+...
T Consensus       204 ~~~~a~~~gv~gTPt~~v~~~~~~g~~~~~~l~~~i~  240 (244)
T COG1651         204 NYKLAQQLGVNGTPTFIVNGKLVPGLPDLDELKAIID  240 (244)
T ss_pred             HHHHHHhcCCCcCCeEEECCeeecCCCCHHHHHHHHH
Confidence            4677889999999999999999999999999988754

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=86.99  E-value=0.73  Score=39.77  Aligned_cols=29  Identities=28%  Similarity=0.548  Sum_probs=24.3

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHH
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLS  325 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~  325 (340)
                      .+.+++.||.|.||.+|||+.+.+.++.+
T Consensus       133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~  161 (178)
T cd03019         133 EKLAKKYKITGVPAFVVNGKYVVNPSAIG  161 (178)
T ss_pred             HHHHHHcCCCCCCeEEECCEEEEChhhcc
Confidence            46788899999999999999877776554

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=86.31  E-value=0.95  Score=37.73  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD  288 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~  288 (340)
                      +++|+-++|+.|++.++.|.+. .....++|-..+
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-gi~~~~idi~~~   35 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEH-QIPFEERNLFKQ   35 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-CCceEEEecCCC
Confidence            5799999999999999999874 334556666544

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=86.26  E-value=1.1  Score=38.70  Aligned_cols=35  Identities=11%  Similarity=0.251  Sum_probs=25.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG  289 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g  289 (340)
                      +++|+-|+|+.|++.+..+.+. .....++|-..+.
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~-gi~~~~~di~~~~   36 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEEN-QIDYTEKNIVSNS   36 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-CCCeEEEEeeCCc
Confidence            5799999999999999999874 3334455555443

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=86.16  E-value=2.1  Score=32.61  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=35.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      +++|+.++||+|.+.+....+.   .++  .++..++. .   +..++=+..+-...|+++.+
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~---gi~y~~~~v~~~~-~---~~~~~~~~~p~~~vP~l~~~   57 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTEL---ELDVILYPCPKGS-P---KRDKFLEKGGKVQVPYLVDP   57 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHc---CCcEEEEECCCCh-H---HHHHHHHhCCCCcccEEEeC
Confidence            4789999999999999877663   344  46664331 1   12233333456779999873

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=85.53  E-value=3.8  Score=29.99  Aligned_cols=60  Identities=18%  Similarity=0.247  Sum_probs=37.6

Q ss_pred             EEEccCCCHHHHHHHHHHhHHhhccCceeECCCC-CCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491          255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL  318 (340)
Q Consensus       255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~-g~~~~~k~~~lC~~~~I~GyPTw~inG~~y  318 (340)
                      ++|+-+.||+|++.+-.+.+. ......++.+.. +.++   ..+.-+...-...|+++.+|+..
T Consensus         2 ~Ly~~~~~~~~~~v~~~l~~~-~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~i   62 (73)
T cd03056           2 KLYGFPLSGNCYKVRLLLALL-GIPYEWVEVDILKGETR---TPEFLALNPNGEVPVLELDGRVL   62 (73)
T ss_pred             EEEeCCCCccHHHHHHHHHHc-CCCcEEEEecCCCcccC---CHHHHHhCCCCCCCEEEECCEEE
Confidence            689999999999998877653 233444555432 1111   23333444556789999988654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=85.38  E-value=3.3  Score=32.61  Aligned_cols=58  Identities=12%  Similarity=0.190  Sum_probs=39.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC-CEE
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV  317 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in-G~~  317 (340)
                      ++.|+.+.||+|++.+-.+... ......++.+...  .   ..++-+...-...|++++| |+.
T Consensus        19 ~~Ly~~~~sp~~~kv~~~L~~~-gl~~~~~~v~~~~--~---~~~~~~~np~~~vPvL~~~~g~~   77 (89)
T cd03055          19 IRLYSMRFCPYAQRARLVLAAK-NIPHEVININLKD--K---PDWFLEKNPQGKVPALEIDEGKV   77 (89)
T ss_pred             EEEEeCCCCchHHHHHHHHHHc-CCCCeEEEeCCCC--C---cHHHHhhCCCCCcCEEEECCCCE
Confidence            7899999999999998877663 3334456665432  1   1234444566789999997 654

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=84.75  E-value=3.4  Score=37.70  Aligned_cols=32  Identities=13%  Similarity=0.046  Sum_probs=22.2

Q ss_pred             HHHHHhhcccC--eEEEccCCCHHHHHHHHHHhH
Q 019491          243 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g--~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      +.|++...+.-  +.+|.|.|||.|..+.+.|.+
T Consensus        17 ~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~   50 (203)
T cd03016          17 IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAK   50 (203)
T ss_pred             EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHH
Confidence            56666544222  337899999999998776654

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=83.68  E-value=1.5  Score=35.23  Aligned_cols=65  Identities=17%  Similarity=0.315  Sum_probs=47.8

Q ss_pred             EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCC--------hhhHhhhhhCCCcccceeEE-CCEEeeC
Q 019491          255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG--------TKIAKACSDAKIEGFPTWVI-NGQVLSG  320 (340)
Q Consensus       255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~--------~k~~~lC~~~~I~GyPTw~i-nG~~y~G  320 (340)
                      ++|||--||.|...++.|.+. ..+.+|||.+....|=.        .+.-+..+.+|-=|.|.+.. ||+..-|
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl-~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~   78 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERL-NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG   78 (85)
T ss_pred             eeeccccCcchHHHHHHHHHc-CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence            799999999999999999885 34567899987654321        11224456678888999988 6776666

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=81.46  E-value=1.8  Score=36.96  Aligned_cols=32  Identities=13%  Similarity=-0.014  Sum_probs=19.5

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHh
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFG  273 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfg  273 (340)
                      .+.|+..-.+.-++.|+ ..|||+|..+.+.+.
T Consensus        22 ~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~   54 (154)
T PRK09437         22 QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLR   54 (154)
T ss_pred             EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHH
Confidence            45666643334444554 468999988765543

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=81.13  E-value=3.2  Score=37.62  Aligned_cols=91  Identities=8%  Similarity=0.039  Sum_probs=53.0

Q ss_pred             hHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCC------C-------CCh------
Q 019491          241 FALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY------R-------KGT------  294 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~------~-------~~~------  294 (340)
                      ..+.|..+..+..+.+|+ +.|||+|......|.+.+  ++  .+.  .|.+++...      .       .+.      
T Consensus        27 ~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~  106 (199)
T PTZ00253         27 KKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLA  106 (199)
T ss_pred             cEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEE
Confidence            346777776666777777 488999998776654432  11  111  333332210      0       000      


Q ss_pred             -hhHhhhhhCCCc------ccceeEE---CCE-E------eeCCCCHHHHHHHh
Q 019491          295 -KIAKACSDAKIE------GFPTWVI---NGQ-V------LSGEQDLSDLAKAS  331 (340)
Q Consensus       295 -k~~~lC~~~~I~------GyPTw~i---nG~-~------y~G~r~l~~La~~s  331 (340)
                       ...++++.+|+.      .||+..|   +|+ +      ..-.|+++++.+..
T Consensus       107 D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l  160 (199)
T PTZ00253        107 DKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLL  160 (199)
T ss_pred             CcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence             135788999985      4788765   565 1      14457888877665

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=80.87  E-value=1.6  Score=39.87  Aligned_cols=37  Identities=27%  Similarity=0.515  Sum_probs=26.3

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCC---------CHHHHHHHhCC
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQ---------DLSDLAKASGF  333 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r---------~l~~La~~sg~  333 (340)
                      .+..++.||+|.||.+|||+.+-+.+         +.|++.+..+|
T Consensus       157 ~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~  202 (207)
T PRK10954        157 EKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKF  202 (207)
T ss_pred             HHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHH
Confidence            34557789999999999999644422         45777666544

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=80.04  E-value=1.9  Score=39.36  Aligned_cols=73  Identities=15%  Similarity=0.137  Sum_probs=42.4

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h--cc--CceeECCCCC---CCCChhhHhhhh-hCCCccccee
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQ--LNYVECFPDG---YRKGTKIAKACS-DAKIEGFPTW  311 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~--~~--l~yVeC~~~g---~~~~~k~~~lC~-~~~I~GyPTw  311 (340)
                      .+.|+++-.+.-++.|.|.||+.|+++ +.+.+..  +  +.  |--|.|..-+   ..+.....+.|+ ++|++ ||-.
T Consensus        17 ~v~Ls~~~GKvvLVvf~AS~C~~~~q~-~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~   94 (183)
T PRK10606         17 VTTLEKYAGNVLLIVNVASKCGLTPQY-EQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMF   94 (183)
T ss_pred             EEeHHHhCCCEEEEEEEeCCCCCcHHH-HHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeE
Confidence            456777666666788999999999743 3333321  1  12  3357774210   011123567786 67874 8876


Q ss_pred             E---ECCE
Q 019491          312 V---INGQ  316 (340)
Q Consensus       312 ~---inG~  316 (340)
                      .   +||+
T Consensus        95 ~k~dvnG~  102 (183)
T PRK10606         95 SKIEVNGE  102 (183)
T ss_pred             EEEccCCC
Confidence            3   3775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
3kp9_A	291	Structure Of A Bacterial Homolog Of Vitamin K Epoxi		6e-24
3kp8_A	106	The Thioredoxin-Like Domain Of A Vkor Homolog From		2e-23

>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide Reductase Length = 291

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 124/276 (44%), Gaps = 33/276 (11%)
Query: 69  IGGVGFLETTYLSYLKLTNSDA-FCPIGGAS-------CGDVLNSDYXXXXXXXXXXXXX 120
           + G+G L T YL+Y KLT   A FC   G S         + L                 
Sbjct: 26  LAGLGSLLTAYLTYTKLTEQPAAFCTGDGGSDLVLSSRWAEFLGIPTAAVGLLGFLGVLA 85
Query: 121 RKSFPIGIN--ESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCXXXXXXXXXXX 178
               P G+   + +    L G  ++M A   Y LY++        C YC           
Sbjct: 86  LAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLR-QFCMYCTTAIILVAGLG 144
Query: 179 XXXXXXXXVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSS 238
                   V   + + G +L  + ++VA L T  ++I   ++ V                
Sbjct: 145 LVT-----VLGHRWLDGGKLAFSYILVAFL-TLVTTIGVYANQVP-------------PP 185
Query: 239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAK 298
           SP A+ LA HL  IG  MYGA+WC HC +QK++FG+ A  Q+ YVEC P+G   GT  A+
Sbjct: 186 SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGA-AFDQVPYVECSPNG--PGTPQAQ 242
Query: 299 ACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFP 334
            C++A I  +PTW+ING+  +G + L  LA ASG+P
Sbjct: 243 ECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYP 278

>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From Synechococcus Sp Length = 106

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Query: 239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAK 298
           SP A+ LA HL  IG  MYGA+WC HC +QK++FG+ A  Q+ YVEC P+G   GT  A+
Sbjct: 1   SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGA-AFDQVPYVECSPNG--PGTPQAQ 57
Query: 299 ACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFP 334
            C++A I  +PTW+ING+  +G + L  LA ASG+P
Sbjct: 58  ECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYP 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	6e-51
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	4e-37
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	3e-05

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score =  170 bits (430), Expect = 6e-51
 Identities = 90/301 (29%), Positives = 133/301 (44%), Gaps = 35/301 (11%)

Query: 44  SDSDLRTTPSPSSTSGFSPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVL 103
           S   L+                 A + G+G L T YL+Y KLT   A    G      VL
Sbjct: 3   SYLKLKAQEETWLQR--HSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGDGGSDLVL 60

Query: 104 NSDYAVVF---VAVLGLLLARKSFPIGI-------NESYGRLILLGSSTSMAAASAYFLY 153
           +S +A       A +GLL       + +        + +    L G  ++M A   Y LY
Sbjct: 61  SSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLY 120

Query: 154 ILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYS 213
           ++        C YC T+ +L   L  +++      +  K+    + +A L +      Y+
Sbjct: 121 LMVAVL-RQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYA 179

Query: 214 SIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFG 273
           +  P                     SP A+ LA HL  IG  MYGA+WC HC +QK++FG
Sbjct: 180 NQVP-------------------PPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFG 220

Query: 274 SEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333
             A  Q+ YVEC P+G   GT  A+ C++A I  +PTW+ING+  +G + L  LA ASG+
Sbjct: 221 -AAFDQVPYVECSPNG--PGTPQAQECTEAGITSYPTWIINGRTYTGVRSLEALAVASGY 277

Query: 334 P 334
           P
Sbjct: 278 P 278

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score =  128 bits (322), Expect = 4e-37
 Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 3/96 (3%)

Query: 239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAK 298
           SP A+ LA HL  IG  MYGA+WC HC +QK++FG  A  Q+ YVEC P+G   GT  A+
Sbjct: 1   SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFG-AAFDQVPYVECSPNG--PGTPQAQ 57

Query: 299 ACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFP 334
            C++A I  +PTW+ING+  +G + L  LA ASG+P
Sbjct: 58  ECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYP 93

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 226 NLPFFETEITTSSSPFALSLAKHLHAIGAKM----YGAFWCSHCLEQKQMFGSEAVKQL- 280
           NLP+ E     +    AL+  K  H    K     +GA WC+ C    +   ++    L 
Sbjct: 5   NLPYDEHADAWTQVKKALAAGKRTH----KPTLLVFGANWCTDCRALDKSLRNQKNTALI 60

Query: 281 --NYVECFPDGYR--KGTKIAKACSDAKIEGFPTWVI---NGQVLSGEQDLSDLAKASGF 333
             ++     D     +  ++++A  D   +G P  V+   +G+V        +LA A   
Sbjct: 61  AKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRY-TTKGGELANARKM 119

Query: 334 PE 335
            +
Sbjct: 120 SD 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	100.0
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.84
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.46
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.44
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.38
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.34
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.33
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.33
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.33
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.33
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.32
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.32
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.31
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.31
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.3
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.3
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.3
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.3
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.29
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.28
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.28
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.28
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.28
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.28
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.28
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.28
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.27
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.27
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.27
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.27
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.27
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.26
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.26
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.26
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.26
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.25
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.25
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.25
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.25
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.24
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.24
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.23
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.23
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.23
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.23
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.23
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.23
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.21
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.21
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.21
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.2
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.2
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.19
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.18
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.18
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.18
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.18
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.18
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.18
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.17
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.17
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.16
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.16
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.16
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.16
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.16
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.15
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.15
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.15
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.15
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.14
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.14
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.14
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.14
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.13
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.12
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.12
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.11
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.1
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.1
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.1
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.1
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.09
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.06
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.63
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.05
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.04
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.03
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.02
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.02
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.59
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.02
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.01
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.01
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.0
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.0
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.98
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.98
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.98
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.98
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.98
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.97
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.94
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.92
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.91
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.91
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.9
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	98.89
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.89
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.88
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.88
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.83
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.83
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.82
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.82
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.82
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.81
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.8
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.8
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.79
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.79
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.78
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.78
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.77
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.76
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.76
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.75
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.75
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.75
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.75
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.75
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.74
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.72
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.71
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.71
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.7
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.7
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.69
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.66
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.66
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.65
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.62
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.62
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.62
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.62
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.62
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.61
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.6
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.59
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.59
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.56
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.55
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.55
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.54
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.53
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.53
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.51
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.51
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.5
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.48
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.45
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.43
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.41
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.41
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.4
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.35
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.34
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.34
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.31
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.31
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.31
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	98.3
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.28
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	98.27
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.26
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.26
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.23
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.23
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.22
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.21
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	98.18
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.16
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.12
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.1
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	98.1
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	98.09
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.37
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.09
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	98.08
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.08
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	98.08
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.06
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.06
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.06
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.02
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	97.98
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.97
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	97.96
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.94
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.94
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.9
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	97.9
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	97.86
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.08
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.85
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.76
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.76
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	97.75
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	97.74
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	97.69
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.64
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	97.58
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	97.57
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.55
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	97.53
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	97.49
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	97.47
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.47
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	97.47
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	97.46
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.44
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	97.34
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	97.31
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.24
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	97.24
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	97.18
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.11
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	97.09
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.07
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.02
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	97.01
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	96.93
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	96.93
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	96.84
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	96.84
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.74
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	96.66
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	96.66
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	96.6
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	96.56
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	96.52
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	96.41
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	96.35
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	96.31
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	96.3
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	95.95
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	95.88
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	95.83
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	95.72
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	95.71
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	95.69
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	95.67
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	95.64
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	95.59
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	95.55
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	95.31
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	95.23
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	94.92
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	94.79
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	94.5
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	94.16
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	94.15
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	94.07
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	94.06
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	94.02
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	93.94
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	93.39
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	93.33
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	93.22
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	93.13
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	93.04
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	93.0
3l78_A	120	Regulatory protein SPX; transcription, transcripti	92.92
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	92.79
3fz4_A	120	Putative arsenate reductase; APC61768, structural	92.74
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	92.39
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	92.2
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	92.19
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	91.8
3gkx_A	120	Putative ARSC family related protein; ARSC family	91.62
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	91.31
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	91.31
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	91.29
3rdw_A	121	Putative arsenate reductase; structural genomics,	91.22
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	91.08
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	91.04
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	90.83
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	90.7
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	90.38
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	90.36
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	90.16
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	90.03
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	89.58
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	89.52
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	88.87
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	88.79
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	88.78
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	88.53
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	87.12
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	85.47
3me7_A	170	Putative uncharacterized protein; electron transfe	83.94
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	83.63
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	80.21
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	80.05

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=100.00  E-value=9.1e-60  Score=450.90  Aligned_cols=255  Identities=34%  Similarity=0.560  Sum_probs=216.1

Q ss_pred             CCCChhHH-HHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCCccccccccchhHHHH---HHHHHHHh-------hc-ccC
Q 019491           58 SGFSPYGW-CAGIGGVGFLETTYLSYLKLTN-SDAFCPIGGASCGDVLNSDYAVVF---VAVLGLLL-------AR-KSF  124 (340)
Q Consensus        58 ~~~~~~~~-i~~La~iGll~T~YLT~~kl~~-~~~~C~i~~~sC~~VL~S~ya~vf---vaalg~ll-------~~-~~~  124 (340)
                      |..++.++ |++++++|+++|+|||++|+++ ++++||+| +||++|++|+||++|   .+.+|++.       .. ...
T Consensus        14 ~~~~~~~~~~~~l~~iGl~~s~yLt~~~~~~~~~~~C~~~-~sC~~Vl~S~~a~~fGiP~~~~G~~~y~~v~~l~~~~~~   92 (291)
T 3kp9_A           14 WLQRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGD-GGSDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDG   92 (291)
T ss_dssp             --CCSCSHHHHHHHHHHHHHHHHHHHHHHHCCCCSCCCC----CCSGGGSSSSEETTEEHHHHHHHHHHHHHHHHHCC--
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CChhhhcccccHhhcCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            44445555 7789999999999999999997 78999986 799999999999998   44444321       11 111


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 019491          125 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVLGVQLCIASLV  204 (340)
Q Consensus       125 ~~~~~~~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g~~~~d~~~~~~~~~~v~~~~  204 (340)
                      ..+++ +|.|+++++++++|++||.||+|+++|+| +++|+||+++|+++++||+++++|++|+|++|+++.+++|+++|
T Consensus        93 ~~~~~-~~~~~~l~~~~~~~~~fs~yL~y~~~~vi-~a~C~~C~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~  170 (291)
T 3kp9_A           93 LPLVK-RWRWPALFGLVSAMTAFEMYMLYLMVAVL-RQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLT  170 (291)
T ss_dssp             CTTCS-TTHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHHHHHHHSSCHHHHCTHHHHHHHHHHHHH
T ss_pred             ccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHH
Confidence            11232 88999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCCCcccccCCCCCCcccccCCCchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeE
Q 019491          205 VAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVE  284 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itt~S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVe  284 (340)
                      +++++++|++.+                   ++|+|+++++|+|+++.++++|+|||||||+++||.|++.| +++++||
T Consensus       171 ~~~~~~~~~~~~-------------------~~s~~~~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA-~~l~~Vd  230 (291)
T 3kp9_A          171 LVTTIGVYANQV-------------------PPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAF-DQVPYVE  230 (291)
T ss_dssp             HHHHHHHHHTTS-------------------CCCCSTHHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGG-GGSCEEE
T ss_pred             HHHHHHHHhcCC-------------------CCCCHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHH-HHcCEEE
Confidence            999999998742                   23889999999999999999999999999999999999975 5688999


Q ss_pred             CCCCCC-CCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhCCCCCCC
Q 019491          285 CFPDGY-RKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFPEMSQ  338 (340)
Q Consensus       285 C~~~g~-~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg~~g~~~  338 (340)
                      |++++. ++   ++++|+++||++||||++|||+|+|.++.|+|.+++||+++++
T Consensus       231 ~d~~d~~~~---~~~la~~~gI~~vPT~~i~G~~~~G~~~~~~L~~~l~~~~~~~  282 (291)
T 3kp9_A          231 CSPNGPGTP---QAQECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYPLEEG  282 (291)
T ss_dssp             SCSSCSSSC---CCHHHHTTTCCSTTEEEETTEEEESCCCHHHHHHHTCCCC---
T ss_pred             EeecCchhh---HHHHHHHcCCcccCeEEECCEEecCCCCHHHHHHHHCCCCccc
Confidence            996543 21   4699999999999999999999999999999999999999874

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.84  E-value=1.4e-20  Score=153.02  Aligned_cols=96  Identities=48%  Similarity=0.988  Sum_probs=83.2

Q ss_pred             chhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491          239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL  318 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y  318 (340)
                      +|.+++||+++.+..+++|+|+|||||+++++.|.+.+ +.+++|||+.++..+  +..++|++++|++|||+++||++|
T Consensus         1 ~~~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a-~~~~~v~~~~~~~~~--~~~~l~~~~~V~~~PT~~i~G~~~   77 (106)
T 3kp8_A            1 SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAF-DQVPYVECSPNGPGT--PQAQECTEAGITSYPTWIINGRTY   77 (106)
T ss_dssp             CHHHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGG-GGSCEEESCTTCTTS--CCCHHHHHTTCCSSSEEEETTEEE
T ss_pred             ChHhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHH-HhCCEEEEecccccc--hhHHHHHHcCCeEeCEEEECCEEe
Confidence            46889999999999999999999999999999999864 567899999654300  135899999999999999999999


Q ss_pred             eCCCCHHHHHHHhCCCCCC
Q 019491          319 SGEQDLSDLAKASGFPEMS  337 (340)
Q Consensus       319 ~G~r~l~~La~~sg~~g~~  337 (340)
                      .|.++.++|.+++||+-+.
T Consensus        78 ~G~~~~~~l~~~~~~~~~~   96 (106)
T 3kp8_A           78 TGVRSLEALAVASGYPLEE   96 (106)
T ss_dssp             ESCCCHHHHHHHHTCCC--
T ss_pred             cCCCCHHHHHHHhCCcccc
Confidence            9999999999999997653

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.46  E-value=1.6e-13  Score=111.70  Aligned_cols=74  Identities=15%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh----------ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC--
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV----------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG--  315 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~----------~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG--  315 (340)
                      ++.-+++|+|+||+||+++++.|.+.|.          -.+..|||+.+        .++|++++|++|||..+  +|  
T Consensus        33 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~  104 (127)
T 3h79_A           33 EKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY--------PDVIERMRVSGFPTMRYYTRIDK  104 (127)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC--------HHHHHHTTCCSSSEEEEECSSCS
T ss_pred             CCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc--------HhHHHhcCCccCCEEEEEeCCCC
Confidence            4455789999999999999999988542          12457888754        58999999999999887  44  


Q ss_pred             ---EEeeCCCCHHHHHHHh
Q 019491          316 ---QVLSGEQDLSDLAKAS  331 (340)
Q Consensus       316 ---~~y~G~r~l~~La~~s  331 (340)
                         .+|.|.++.++|.++.
T Consensus       105 ~~~~~~~G~~~~~~l~~~i  123 (127)
T 3h79_A          105 QEPFEYSGQRYLSLVDSFV  123 (127)
T ss_dssp             SSCEECCSCCCHHHHHHHH
T ss_pred             CCceEecCCccHHHHHHHH
Confidence               3799999999999886

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.44  E-value=3.7e-13  Score=108.73  Aligned_cols=70  Identities=23%  Similarity=0.342  Sum_probs=56.6

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD  323 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~  323 (340)
                      -++.|+|+||+||++++|.|.+.+.+  .  +..|||+.+        .++|++++|+++||+.+  ||+   ++.| ++
T Consensus        23 vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~V~~~PT~~~~~~G~~v~~~~G-~~   93 (105)
T 3zzx_A           23 VVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDEC--------EDIAQDNQIACMPTFLFMKNGQKLDSLSG-AN   93 (105)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTC--------HHHHHHTTCCBSSEEEEEETTEEEEEEES-CC
T ss_pred             EEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccC--------HHHHHHcCCCeecEEEEEECCEEEEEEeC-cC
Confidence            36779999999999999999876532  2  346777643        58999999999999887  897   6888 58


Q ss_pred             HHHHHHHh
Q 019491          324 LSDLAKAS  331 (340)
Q Consensus       324 l~~La~~s  331 (340)
                      .++|.++.
T Consensus        94 ~~~l~~~i  101 (105)
T 3zzx_A           94 YDKLLELV  101 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            89998875

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.38  E-value=1.9e-12  Score=101.13  Aligned_cols=74  Identities=27%  Similarity=0.557  Sum_probs=61.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc------c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK------Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~------~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---  316 (340)
                      ++.-+++|+|+|||||+++++.|.+.+.+      .  +..|||+.+        .++|++++|+++||+.+  ||+   
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~   92 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE--------RNICSKYSVRGYPTLLLFRGGKKVS   92 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecccc--------HhHHHhcCCCcccEEEEEeCCcEEE
Confidence            55668899999999999999999886532      2  346777643        58999999999999887  886   


Q ss_pred             EeeCCCCHHHHHHHh
Q 019491          317 VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 ~y~G~r~l~~La~~s  331 (340)
                      +|.|.++.++|.++.
T Consensus        93 ~~~g~~~~~~l~~~l  107 (111)
T 3uvt_A           93 EHSGGRDLDSLHRFV  107 (111)
T ss_dssp             EECSCCSHHHHHHHH
T ss_pred             eccCCcCHHHHHHHH
Confidence            699999999999875

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.34  E-value=6.4e-13  Score=99.62  Aligned_cols=72  Identities=24%  Similarity=0.457  Sum_probs=58.5

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE-eeCCCCHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV-LSGEQDLS  325 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~-y~G~r~l~  325 (340)
                      ..+++|+|+|||||+++++.|.+.+.+   .  +.+||++.+        .++++++||+++||+.+||+. +.|..+.+
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~G~~~~~G~~~~~   75 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMEN--------PQKAMEYGIMAVPTIVINGDVEFIGAPTKE   75 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSS--------CCTTTSTTTCCSSEEEETTEEECCSSSSSH
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCC--------HHHHHHCCCcccCEEEECCEEeeecCCCHH
Confidence            447899999999999999999874321   2  346777644        377999999999999999984 99999999


Q ss_pred             HHHHHh
Q 019491          326 DLAKAS  331 (340)
Q Consensus       326 ~La~~s  331 (340)
                      +|.++.
T Consensus        76 ~l~~~l   81 (85)
T 1fo5_A           76 ALVEAI   81 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.33  E-value=4.5e-12  Score=101.64  Aligned_cols=80  Identities=13%  Similarity=0.200  Sum_probs=62.6

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      +.-+++|+|+|||||++++|.|.+.+.   ..+.+++++.+.  +.....+++++++|+++||..+  ||+   ++.|.+
T Consensus        30 ~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~Pt~~~~~~G~~~~~~~G~~  107 (118)
T 1zma_A           30 ETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS--QLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSM  107 (118)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGG--GHHHHHHHHHHHTCCSSCEEEEEETTEEEEECCTTC
T ss_pred             CeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcC--cHHHHHHHHHHcCCCCCCeEEEEECCEEEEEecCCC
Confidence            455789999999999999999987542   246788886432  1112458899999999999876  886   689999


Q ss_pred             CHHHHHHHhC
Q 019491          323 DLSDLAKASG  332 (340)
Q Consensus       323 ~l~~La~~sg  332 (340)
                      +.++|.++..
T Consensus       108 ~~~~l~~~l~  117 (118)
T 1zma_A          108 SAQEIKDFAG  117 (118)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHhh
Confidence            9999998864

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.33  E-value=6.6e-12  Score=97.51  Aligned_cols=74  Identities=23%  Similarity=0.314  Sum_probs=59.7

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--c-cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--K-QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~-~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.  . ++  ..|||+.+        .+++++++|+++||+.+  ||+   ++.
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~   92 (109)
T 3tco_A           21 NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDEN--------QKIADKYSVLNIPTTLIFVNGQLVDSLV   92 (109)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccC--------HHHHHhcCcccCCEEEEEcCCcEEEeee
Confidence            5555889999999999999999987542  1 23  36777643        58999999999999776  886   689


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus        93 g~~~~~~l~~~l  104 (109)
T 3tco_A           93 GAVDEDTLESTV  104 (109)
T ss_dssp             SCCCHHHHHHHH
T ss_pred             ccCCHHHHHHHH
Confidence            999999998875

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.33  E-value=6e-12  Score=98.55  Aligned_cols=74  Identities=12%  Similarity=0.294  Sum_probs=59.4

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc---cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.+   ++  ..|||+.+        .++|++++|+++||+.+  ||+   ++.
T Consensus        22 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~   93 (111)
T 3gnj_A           22 GKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEE--------KTLFQRFSLKGVPQILYFKDGEYKGKMA   93 (111)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTC--------HHHHHHTTCCSSCEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcC--------hhHHHhcCCCcCCEEEEEECCEEEEEEe
Confidence            34447789999999999999999775421   23  36777643        58999999999999887  887   689


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus        94 g~~~~~~l~~~l  105 (111)
T 3gnj_A           94 GDVEDDEVEQMI  105 (111)
T ss_dssp             SSCCHHHHHHHH
T ss_pred             ccCCHHHHHHHH
Confidence            999999998875

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.33  E-value=4.8e-12  Score=98.06  Aligned_cols=74  Identities=16%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc---cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      ++.-+++|+|+|||||+++++.|.+.+.+   ++  ..|||+.+        .+++++++|+++||+.+  ||+   ++.
T Consensus        19 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~   90 (106)
T 3die_A           19 SGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDEN--------PSTAAKYEVMSIPTLIVFKDGQPVDKVV   90 (106)
T ss_dssp             SSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHTTCCSBSEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcC--------HHHHHhCCCcccCEEEEEeCCeEEEEEe
Confidence            34447789999999999999999775421   23  46777643        58899999999999887  887   689


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus        91 g~~~~~~l~~~l  102 (106)
T 3die_A           91 GFQPKENLAEVL  102 (106)
T ss_dssp             SCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            999999999875

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.32  E-value=1.1e-12  Score=98.27  Aligned_cols=72  Identities=15%  Similarity=0.310  Sum_probs=57.9

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhh--c-cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE-eeCCCCHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAV--K-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV-LSGEQDLS  325 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~-~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~-y~G~r~l~  325 (340)
                      ..+++|+|+|||||+++++.+.+.+.  . .+.  +||++.+        .++++++||+++||..+||+. +.|..+.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~G~~~~~G~~~~~   74 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD--------REKAIEYGLMAVPAIAINGVVRFVGAPSRE   74 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTC--------GGGGGGTCSSCSSEEEETTTEEEECSSCCH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHhCCceeeCEEEECCEEEEccCCCHH
Confidence            34789999999999999999987432  1 344  5666533        478999999999999999984 99999999


Q ss_pred             HHHHHh
Q 019491          326 DLAKAS  331 (340)
Q Consensus       326 ~La~~s  331 (340)
                      +|.++.
T Consensus        75 ~l~~~l   80 (85)
T 1nho_A           75 ELFEAI   80 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.32  E-value=8.6e-12  Score=100.51  Aligned_cols=74  Identities=22%  Similarity=0.321  Sum_probs=58.8

Q ss_pred             hcccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          249 LHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       249 L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      =.+.-+++|+|+|||||+++++.|.+.+.+  .+  -.|||+.+        .+++++++|+++||+++  ||+   ++.
T Consensus        30 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~  101 (116)
T 3qfa_C           30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDC--------QDVASECEVKSMPTFQFFKKGQKVGEFS  101 (116)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTT--------HHHHHHTTCCSSSEEEEESSSSEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--------HHHHHHcCCccccEEEEEeCCeEEEEEc
Confidence            345557789999999999999999885432  23  36777643        58999999999999887  775   588


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |. +.++|.++.
T Consensus       102 G~-~~~~l~~~l  112 (116)
T 3qfa_C          102 GA-NKEKLEATI  112 (116)
T ss_dssp             SC-CHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            99 999998875

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.31  E-value=3.8e-12  Score=100.10  Aligned_cols=72  Identities=13%  Similarity=-0.010  Sum_probs=50.5

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      .-+++|+|+|||||+++++.|.+.+.+  .  +..|||+.+        .+++++++|+++||..+  ||+   ++.|.+
T Consensus        20 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~   91 (105)
T 4euy_A           20 LVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDM--------QEIAGRYAVFTGPTVLLFYNGKEILRESRFI   91 (105)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC-----------------CCCCEEEEEETTEEEEEEESSC
T ss_pred             CEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCC--------HHHHHhcCCCCCCEEEEEeCCeEEEEEeCCc
Confidence            337789999999999999999875432  2  346777654        48899999999999887  887   579999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        92 ~~~~l~~~l  100 (105)
T 4euy_A           92 SLENLERTI  100 (105)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999999875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.8e-12  Score=101.89  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=62.1

Q ss_pred             HhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--
Q 019491          247 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--  316 (340)
Q Consensus       247 ~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--  316 (340)
                      +.++..-+++|+|+|||||+++++.|.+.+.  .  .+  ..|||+.+        .++|++++|+++||..+  ||+  
T Consensus        19 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~   90 (126)
T 1x5e_A           19 ELLEGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQ--------PGLSGRFIINALPTIYHCKDGEFR   90 (126)
T ss_dssp             HHTSSEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCC--------HHHHHHcCCcccCEEEEEeCCeEE
Confidence            3455556789999999999999999877432  1  23  46777643        48999999999999887  887  


Q ss_pred             EeeCCCCHHHHHHHhC
Q 019491          317 VLSGEQDLSDLAKASG  332 (340)
Q Consensus       317 ~y~G~r~l~~La~~sg  332 (340)
                      +|.|.++.++|.++..
T Consensus        91 ~~~G~~~~~~l~~~l~  106 (126)
T 1x5e_A           91 RYQGPRTKKDFINFIS  106 (126)
T ss_dssp             ECCSCCCHHHHHHHHH
T ss_pred             EeecCCCHHHHHHHHH
Confidence            5899999999998874

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.30  E-value=9e-12  Score=96.83  Aligned_cols=74  Identities=19%  Similarity=0.260  Sum_probs=59.1

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh---ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +.-+++|+|+|||||+++++.|.+.+.   .++  ..|||+.+        .++|++++|+++||+.+  ||+   ++.|
T Consensus        18 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   89 (105)
T 1nsw_A           18 GPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN--------PETTSQFGIMSIPTLILFKGGRPVKQLIG   89 (105)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCC--------HHHHHHcCCccccEEEEEeCCeEEEEEec
Confidence            344778999999999999999876432   123  46777643        48899999999999887  887   5899


Q ss_pred             CCCHHHHHHHhC
Q 019491          321 EQDLSDLAKASG  332 (340)
Q Consensus       321 ~r~l~~La~~sg  332 (340)
                      .++.++|.++..
T Consensus        90 ~~~~~~l~~~l~  101 (105)
T 1nsw_A           90 YQPKEQLEAQLA  101 (105)
T ss_dssp             CCCHHHHHHHTT
T ss_pred             CCCHHHHHHHHH
Confidence            999999998764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.30  E-value=9.2e-12  Score=96.54  Aligned_cols=78  Identities=22%  Similarity=0.354  Sum_probs=60.1

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--  316 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--  316 (340)
                      +.++-++.-+++|+|+|||||+++++.|.+.+.  ..+.  .|||+.+        .+++++++|+++||+.+  +|+  
T Consensus        15 l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~   86 (105)
T 3m9j_A           15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDC--------QDVASESEVKSMPTFQFFKKGQKV   86 (105)
T ss_dssp             HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTC--------HHHHHHTTCCBSSEEEEEETTEEE
T ss_pred             HHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhh--------HHHHHHcCCCcCcEEEEEECCeEE
Confidence            333334555778999999999999999987542  2243  5666543        58999999999999888  887  


Q ss_pred             -EeeCCCCHHHHHHHh
Q 019491          317 -VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 -~y~G~r~l~~La~~s  331 (340)
                       ++.|. +.++|.++.
T Consensus        87 ~~~~g~-~~~~l~~~l  101 (105)
T 3m9j_A           87 GEFSGA-NKEKLEATI  101 (105)
T ss_dssp             EEEESS-CHHHHHHHH
T ss_pred             EEEeCC-CHHHHHHHH
Confidence             58899 999998875

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.30  E-value=5.9e-12  Score=103.21  Aligned_cols=75  Identities=19%  Similarity=0.360  Sum_probs=59.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---cc---Cc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--E
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQ---LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--V  317 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~---l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~  317 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.   .+   +.  .|||+.+        .++|++++|+++||+++  ||+  +
T Consensus        34 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~  105 (140)
T 2dj1_A           34 KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA--------SMLASKFDVSGYPTIKILKKGQAVD  105 (140)
T ss_dssp             CSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC--------HHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc--------HHHHHHCCCCccCeEEEEECCcEEE
Confidence            3455789999999999999999876431   11   43  5666543        58999999999999887  886  6


Q ss_pred             eeCCCCHHHHHHHhC
Q 019491          318 LSGEQDLSDLAKASG  332 (340)
Q Consensus       318 y~G~r~l~~La~~sg  332 (340)
                      |.|.++.++|.++..
T Consensus       106 ~~g~~~~~~l~~~l~  120 (140)
T 2dj1_A          106 YDGSRTQEEIVAKVR  120 (140)
T ss_dssp             CCSCCCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHH
Confidence            899999999988764

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.30  E-value=3.9e-12  Score=103.02  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=58.7

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--c---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE---CCE---Ee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--K---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---VL  318 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~---~y  318 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.  +   .+..|||+.+        .++|++++|+++||+++   +|+   +|
T Consensus        35 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~~~~~~~~~  106 (130)
T 2dml_A           35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKH--------QSLGGQYGVQGFPTIKIFGANKNKPEDY  106 (130)
T ss_dssp             SSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTC--------HHHHHHHTCCSSSEEEEESSCTTSCEEC
T ss_pred             CCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCC--------HHHHHHcCCCccCEEEEEeCCCCeEEEe
Confidence            4455789999999999999999977432  1   2346888654        58999999999999887   333   69


Q ss_pred             eCCCCHHHHHHHhC
Q 019491          319 SGEQDLSDLAKASG  332 (340)
Q Consensus       319 ~G~r~l~~La~~sg  332 (340)
                      .|.++.++|.++..
T Consensus       107 ~G~~~~~~l~~~l~  120 (130)
T 2dml_A          107 QGGRTGEAIVDAAL  120 (130)
T ss_dssp             CSCCSHHHHHHHHH
T ss_pred             ecCCCHHHHHHHHH
Confidence            99999999987753

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.29  E-value=8.7e-12  Score=96.45  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=58.4

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      ++.-+++|+|+|||||+++++.|.+.+.   .++.  .|||+.+        .++|++++|+++||+.+  ||+   ++.
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~   89 (105)
T 1fb6_A           18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA--------PGIATQYNIRSIPTVLFFKNGERKESII   89 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcch--------HHHHHhCCCCcccEEEEEeCCeEEEEEe
Confidence            3445789999999999999999976432   1244  5666533        58899999999999887  887   588


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus        90 G~~~~~~l~~~l  101 (105)
T 1fb6_A           90 GAVPKSTLTDSI  101 (105)
T ss_dssp             ECCCHHHHHHHH
T ss_pred             cCCCHHHHHHHH
Confidence            999999998765

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.28  E-value=1.5e-11  Score=95.26  Aligned_cols=75  Identities=21%  Similarity=0.357  Sum_probs=60.1

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--c-cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--K-QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~-~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+++|||||+++++.|.+.+.  . ++  -.|||+.+        .++|++++|+++||+.+  ||+   ++.
T Consensus        18 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~   89 (109)
T 2yzu_A           18 HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDEN--------PKTAMRYRVMSIPTVILFKDGQPVEVLV   89 (109)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCC--------HhHHHhCCCCcCCEEEEEeCCcEeeeEe
Confidence            3455789999999999999999877432  1 23  36777643        48899999999999988  887   589


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.++|.++..
T Consensus        90 g~~~~~~l~~~l~  102 (109)
T 2yzu_A           90 GAQPKRNYQAKIE  102 (109)
T ss_dssp             SCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence            9999999998764

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.28  E-value=1.1e-11  Score=96.78  Aligned_cols=73  Identities=18%  Similarity=0.274  Sum_probs=58.4

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +.-+++|+|+|||||+++++.|.+.+.+   +  +..|||+.+        .++|++++|+++||+.+  ||+   ++.|
T Consensus        21 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   92 (108)
T 2trx_A           21 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKVG   92 (108)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC--------TTHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCC--------HHHHHHcCCcccCEEEEEeCCEEEEEEec
Confidence            3447789999999999999999774421   2  346777654        37899999999999988  897   4899


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus        93 ~~~~~~l~~~l  103 (108)
T 2trx_A           93 ALSKGQLKEFL  103 (108)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999998775

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.28  E-value=1.4e-11  Score=99.39  Aligned_cols=74  Identities=16%  Similarity=0.235  Sum_probs=59.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||+|+++++.|.+.+.   .++  ..|||+.+        .+++++++|+++||+++  ||+   ++.
T Consensus        31 ~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~  102 (119)
T 1w4v_A           31 ETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDH--------TDLAIEYEVSAVPTVLAMKNGDVVDKFV  102 (119)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTT--------HHHHHHTTCCSSSEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCC--------HHHHHHcCCCcccEEEEEeCCcEEEEEc
Confidence            3445789999999999999999877432   123  46777643        48999999999999888  897   589


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus       103 G~~~~~~l~~~l  114 (119)
T 1w4v_A          103 GIKDEDQLEAFL  114 (119)
T ss_dssp             SCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            999999998765

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.28  E-value=7.4e-12  Score=121.14  Aligned_cols=74  Identities=19%  Similarity=0.346  Sum_probs=61.3

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh-----------ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV-----------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-  316 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~-----------~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-  316 (340)
                      +.-+++|+|+||+||+++++.|.+.|.           ..+..|||+.+        .++|++++|+||||.++  +|+ 
T Consensus        23 ~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~--------~~l~~~~~v~~~Pt~~~f~~G~~   94 (382)
T 2r2j_A           23 DVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH--------SDIAQRYRISKYPTLKLFRNGMM   94 (382)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC--------HHHHHHTTCCEESEEEEEETTEE
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc--------HHHHHhcCCCcCCEEEEEeCCcE
Confidence            455789999999999999999987542           12568999854        58999999999999887  786 


Q ss_pred             ---EeeCCCCHHHHHHHhC
Q 019491          317 ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       317 ---~y~G~r~l~~La~~sg  332 (340)
                         .|.|.++.++|.++..
T Consensus        95 ~~~~~~G~~~~~~l~~~i~  113 (382)
T 2r2j_A           95 MKREYRGQRSVKALADYIR  113 (382)
T ss_dssp             EEEECCSCCSHHHHHHHHH
T ss_pred             eeeeecCcchHHHHHHHHH
Confidence               4899999999998763

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.28  E-value=1.2e-11  Score=95.88  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=58.7

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--c-c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K-Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~-~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +.-+++|+++|||||+++++.|.+.+.  . .  +..|||+.+        .+++++++|+++||+.+  ||+   ++.|
T Consensus        21 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   92 (107)
T 2i4a_A           21 GLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDN--------PETPNAYQVRSIPTLMLVRDGKVIDKKVG   92 (107)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTC--------CHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCC--------HHHHHhcCCCccCEEEEEeCCEEEEEecC
Confidence            344778999999999999999876432  1 2  446787654        38899999999999888  897   4889


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus        93 ~~~~~~l~~~l  103 (107)
T 2i4a_A           93 ALPKSQLKAWV  103 (107)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999998875

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.28  E-value=2.3e-11  Score=98.04  Aligned_cols=87  Identities=14%  Similarity=0.222  Sum_probs=63.0

Q ss_pred             CCCchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCccccee
Q 019491          236 TSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTW  311 (340)
Q Consensus       236 t~S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw  311 (340)
                      ...+.....-+..-.+.-+++|+|+|||+|+++++.|.+.+.+  .+  ..|||+.+        .+++++++|+++||+
T Consensus        16 ~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~   87 (114)
T 2oe3_A           16 KLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDES--------PDIAKECEVTAMPTF   87 (114)
T ss_dssp             BCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCSBSEE
T ss_pred             ecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--------HHHHHHCCCCcccEE
Confidence            3334444333333344557899999999999999999775422  24  35666543        489999999999998


Q ss_pred             EE--CCE---EeeCCCCHHHHHHHh
Q 019491          312 VI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       312 ~i--nG~---~y~G~r~l~~La~~s  331 (340)
                      ++  ||+   ++.|.+ .++|.++.
T Consensus        88 ~~~~~G~~~~~~~G~~-~~~l~~~l  111 (114)
T 2oe3_A           88 VLGKDGQLIGKIIGAN-PTALEKGI  111 (114)
T ss_dssp             EEEETTEEEEEEESSC-HHHHHHHH
T ss_pred             EEEeCCeEEEEEeCCC-HHHHHHHH
Confidence            87  887   489999 89998875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.28  E-value=1.9e-11  Score=93.71  Aligned_cols=74  Identities=18%  Similarity=0.320  Sum_probs=59.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+++|||||+++++.|.+.+.  ..+  ..|||+.+        .+++++++|+++||+.+  ||+   ++.|
T Consensus        16 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g   87 (104)
T 2e0q_A           16 HEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDEN--------PDIAARYGVMSLPTVIFFKDGEPVDEIIG   87 (104)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCSSCEEEEEETTEEEEEEES
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCC--------HHHHHhCCccccCEEEEEECCeEhhhccC
Confidence            3455789999999999999999877432  123  46777643        48999999999999988  887   5899


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus        88 ~~~~~~l~~~l   98 (104)
T 2e0q_A           88 AVPREEIEIRI   98 (104)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999998765

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.27  E-value=2.1e-11  Score=97.04  Aligned_cols=73  Identities=16%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+|+|||+|+++++.|.+.+.  ..+  -.|||+.+        .+++++++|+++||+++  ||+   ++.|
T Consensus        24 ~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G   95 (109)
T 3f3q_A           24 DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDEL--------GDVAQKNEVSAMPTLLLFKNGKEVAKVVG   95 (109)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCC--------HHHHHHcCCCccCEEEEEECCEEEEEEeC
Confidence            4445778999999999999999977542  233  35777643        58999999999999887  887   5789


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      . +.++|.++.
T Consensus        96 ~-~~~~l~~~i  105 (109)
T 3f3q_A           96 A-NPAAIKQAI  105 (109)
T ss_dssp             S-CHHHHHHHH
T ss_pred             C-CHHHHHHHH
Confidence            8 668888764

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.27  E-value=1.3e-11  Score=97.31  Aligned_cols=73  Identities=12%  Similarity=0.247  Sum_probs=58.2

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh---ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +.-+++|+|+|||||+++++.|.+.+.   .++  -.|||+.+        .+++++++|+++||+.+  ||+   ++.|
T Consensus        24 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   95 (112)
T 1t00_A           24 KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDEN--------PGTAAKYGVMSIPTLNVYQGGEVAKTIVG   95 (112)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCC--------HHHHHhCCCCcccEEEEEeCCEEEEEEeC
Confidence            344789999999999999999877432   123  35666643        58999999999999887  887   5899


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus        96 ~~~~~~l~~~l  106 (112)
T 1t00_A           96 AKPKAAIVRDL  106 (112)
T ss_dssp             CCCHHHHHHHT
T ss_pred             CCCHHHHHHHH
Confidence            99999998875

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.27  E-value=1.6e-11  Score=97.80  Aligned_cols=76  Identities=16%  Similarity=0.302  Sum_probs=61.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc---cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.+   .+  ..|||+.+        .++|++++|+++||+.+  ||+   ++.
T Consensus        30 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~  101 (121)
T 2i1u_A           30 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTN--------PETARNFQVVSIPTLILFKDGQPVKRIV  101 (121)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHhcCCCcCCEEEEEECCEEEEEec
Confidence            34457899999999999999999774421   23  46777643        48999999999999887  887   589


Q ss_pred             CCCCHHHHHHHhCC
Q 019491          320 GEQDLSDLAKASGF  333 (340)
Q Consensus       320 G~r~l~~La~~sg~  333 (340)
                      |.++.++|.++..-
T Consensus       102 G~~~~~~l~~~l~~  115 (121)
T 2i1u_A          102 GAKGKAALLRELSD  115 (121)
T ss_dssp             SCCCHHHHHHHTCS
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999999998764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.27  E-value=9.2e-12  Score=97.08  Aligned_cols=74  Identities=16%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      ++.-+++|+|+|||||+++++.|.+.+.   .++.  .|||+.+        .+++++++|+++||+.+  ||+   ++.
T Consensus        19 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~   90 (107)
T 1dby_A           19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES--------PNVASEYGIRSIPTIMVFKGGKKCETII   90 (107)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHHTCCSSCEEEEESSSSEEEEEE
T ss_pred             CCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCC--------HHHHHHCCCCcCCEEEEEeCCEEEEEEe
Confidence            3444779999999999999999977432   1243  5666543        48899999999999887  786   489


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus        91 G~~~~~~l~~~l  102 (107)
T 1dby_A           91 GAVPKATIVQTV  102 (107)
T ss_dssp             SCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            999999988764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.27  E-value=1.1e-11  Score=101.11  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=60.2

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||||+++++.+.+.+.   .+  +-.|||+.+        .+++++++|+++||+++  ||+   ++.
T Consensus        42 ~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~  113 (128)
T 3ul3_B           42 NTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKN--------ESLARKFSVKSLPTIILLKNKTMLARKD  113 (128)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGC--------HHHHHHTTCCSSSEEEEEETTEEEEEES
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCCcCEEEEEECCEEEEEec
Confidence            3444778999999999999999877432   12  346777644        58999999999999887  887   688


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.++|.++..
T Consensus       114 G~~~~~~l~~~l~  126 (128)
T 3ul3_B          114 HFVSSNDLIALIK  126 (128)
T ss_dssp             SCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHHH
Confidence            9999999998864

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.26  E-value=2.6e-11  Score=95.18  Aligned_cols=73  Identities=19%  Similarity=0.242  Sum_probs=55.5

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.+  .+  ..||++.+        .+++++++|+++||+.+  ||+   ++.|
T Consensus        21 ~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   92 (107)
T 1gh2_A           21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQC--------QGTAATNNISATPTFQFFRNKVRIDQYQG   92 (107)
T ss_dssp             TSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTS--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccC--------HHHHHhcCCCcccEEEEEECCeEEEEEeC
Confidence            34457799999999999999999875432  34  35777643        58999999999999887  887   5888


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .. .++|.++.
T Consensus        93 ~~-~~~l~~~l  102 (107)
T 1gh2_A           93 AD-AVGLEEKI  102 (107)
T ss_dssp             SC-HHHHHHHH
T ss_pred             CC-HHHHHHHH
Confidence            54 46677664

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.26  E-value=2.8e-11  Score=96.62  Aligned_cols=82  Identities=18%  Similarity=0.328  Sum_probs=61.3

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc-cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG  315 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG  315 (340)
                      ....+.++-.+.-+++|+|+|||||+++++.|.+.+.+ .+  ..|||+.+        .+++++++|+++||..+  ||
T Consensus        24 ~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G   95 (117)
T 2xc2_A           24 LESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKL--------EETARKYNISAMPTFIAIKNG   95 (117)
T ss_dssp             HHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTSSSEEEEEETTTS--------HHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHcCcEEEEEECCcc--------HHHHHHcCCCccceEEEEeCC
Confidence            33344443344557799999999999999999886533 33  35676543        58999999999999887  88


Q ss_pred             E---EeeCCCCHHHHHHHh
Q 019491          316 Q---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       316 ~---~y~G~r~l~~La~~s  331 (340)
                      +   ++.| .+.++|.++.
T Consensus        96 ~~~~~~~G-~~~~~l~~~l  113 (117)
T 2xc2_A           96 EKVGDVVG-ASIAKVEDMI  113 (117)
T ss_dssp             EEEEEEES-SCHHHHHHHH
T ss_pred             cEEEEEeC-CCHHHHHHHH
Confidence            7   4789 6888888764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.26  E-value=1.7e-11  Score=96.34  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=58.7

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +.-+++|+++|||||+++++.|.+.+.+   +  +..|||+.+        .++|++++|+++||+.+  ||+   ++.|
T Consensus        26 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~g   97 (115)
T 1thx_A           26 QPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPN--------PTTVKKYKVEGVPALRLVKGEQILDSTEG   97 (115)
T ss_dssp             SCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             ceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCC--------HHHHHHcCCCceeEEEEEcCCEEEEEecC
Confidence            3447799999999999999999774321   2  346777643        48999999999999888  887   5899


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus        98 ~~~~~~l~~~l  108 (115)
T 1thx_A           98 VISKDKLLSFL  108 (115)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999998875

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.26  E-value=7.9e-12  Score=99.63  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=61.1

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      +.-+++|+|+|||+|+++++.|.+.+.+  .+  ..||++.+        .+++++++|+++||+.+  ||+   ++.|.
T Consensus        20 ~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~   91 (110)
T 2l6c_A           20 SDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEAR--------PELMKELGFERVPTLVFIRDGKVAKVFSGI   91 (110)
T ss_dssp             SEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGC--------HHHHHHTTCCSSCEEEEEESSSEEEEEESC
T ss_pred             CCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCC--------HHHHHHcCCcccCEEEEEECCEEEEEEcCC
Confidence            3447789999999999999999875432  24  35676533        58999999999999987  887   57799


Q ss_pred             CCHHHHHHHhCCCCC
Q 019491          322 QDLSDLAKASGFPEM  336 (340)
Q Consensus       322 r~l~~La~~sg~~g~  336 (340)
                      ++.++|.++....++
T Consensus        92 ~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           92 MNPRELQALYASIHH  106 (110)
T ss_dssp             CCHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999988776543

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.2e-11  Score=100.05  Aligned_cols=75  Identities=27%  Similarity=0.421  Sum_probs=59.2

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHh--h-----cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-----KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A--~-----~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--  316 (340)
                      .+.-+++|+|+|||||+++++.|.+.+  .     ..  +..|||+.+        .++|++++|+++||+++  +|+  
T Consensus        25 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~   96 (133)
T 1x5d_A           25 EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN--------QVLASRYGIRGFPTIKIFQKGESP   96 (133)
T ss_dssp             SSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC--------CHHHHHHTCCSSSEEEEEETTEEE
T ss_pred             CCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC--------HHHHHhCCCCeeCeEEEEeCCCce
Confidence            344578999999999999999887643  1     12  346788654        38999999999999887  776  


Q ss_pred             -EeeCCCCHHHHHHHhC
Q 019491          317 -VLSGEQDLSDLAKASG  332 (340)
Q Consensus       317 -~y~G~r~l~~La~~sg  332 (340)
                       +|.|.++.++|.++..
T Consensus        97 ~~~~G~~~~~~l~~~l~  113 (133)
T 1x5d_A           97 VDYDGGRTRSDIVSRAL  113 (133)
T ss_dssp             EEECSCCSHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHH
Confidence             6899999999988763

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.25  E-value=2.1e-11  Score=95.81  Aligned_cols=73  Identities=22%  Similarity=0.326  Sum_probs=57.8

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--c-cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--K-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~-~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.  . .+.  .|||+.+        .+++++++|+++||+.+  ||+   ++.
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~   95 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAV--------AAVAEAAGITAMPTFHVYKDGVKADDLV   95 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTT--------HHHHHHHTCCBSSEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCch--------HHHHHHcCCCcccEEEEEECCeEEEEEc
Confidence            4556789999999999999999977542  2 343  5666543        58999999999999887  887   588


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |. +.++|.++.
T Consensus        96 G~-~~~~l~~~l  106 (112)
T 1ep7_A           96 GA-SQDKLKALV  106 (112)
T ss_dssp             SC-CHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            98 899988765

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.25  E-value=1.6e-11  Score=97.79  Aligned_cols=75  Identities=11%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh---cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +.-+++|+|+|||||+++++.|.+.+.   .+  +-.|||+.+        .++|++++|+++||+.+  ||+   ++.|
T Consensus        18 ~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G   89 (112)
T 2voc_A           18 GVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN--------QETAGKYGVMSIPTLLVLKDGEVVETSVG   89 (112)
T ss_dssp             SEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTC--------CSHHHHTTCCSBSEEEEEETTEEEEEEES
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCC--------HHHHHHcCCCcccEEEEEeCCEEEEEEeC
Confidence            344778999999999999999876432   12  346777654        37899999999999887  897   5899


Q ss_pred             CCCHHHHHHHhCC
Q 019491          321 EQDLSDLAKASGF  333 (340)
Q Consensus       321 ~r~l~~La~~sg~  333 (340)
                      .++.++|.++..-
T Consensus        90 ~~~~~~l~~~l~~  102 (112)
T 2voc_A           90 FKPKEALQELVNK  102 (112)
T ss_dssp             CCCHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999998764

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.4e-11  Score=116.35  Aligned_cols=76  Identities=26%  Similarity=0.475  Sum_probs=62.2

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---------
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---------  316 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---------  316 (340)
                      -+++|+|+||+||+++++.|.+.+.+     .+..|+|+.+.      ..++|++++|++|||+.+  +|+         
T Consensus        38 vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~------~~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g~~  111 (298)
T 3ed3_A           38 SLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK------NKALCAKYDVNGFPTLMVFRPPKIDLSKPIDN  111 (298)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTT------THHHHHHTTCCBSSEEEEEECCCC--------
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCcc------CHHHHHhCCCCccceEEEEECCceeecccccc
Confidence            47789999999999999999876522     25689998542      369999999999999887  663         


Q ss_pred             -----------EeeCCCCHHHHHHHhCCC
Q 019491          317 -----------VLSGEQDLSDLAKASGFP  334 (340)
Q Consensus       317 -----------~y~G~r~l~~La~~sg~~  334 (340)
                                 +|.|.|+.++|.+|..-.
T Consensus       112 ~~~~~~~~~~~~y~G~r~~~~i~~fl~~~  140 (298)
T 3ed3_A          112 AKKSFSAHANEVYSGARTLAPIVDFSLSR  140 (298)
T ss_dssp             -----CCCEEEECCSCCSHHHHHHHHHTT
T ss_pred             cccccccccceeecCCcCHHHHHHHHHHh
Confidence                       799999999999987543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.24  E-value=1.3e-11  Score=113.20  Aligned_cols=73  Identities=16%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh-------cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV-------KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~-------~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G  320 (340)
                      +..+++|+|||||||+++++.|.+.+.       ..  +..|||+.+        .+++++++|++|||.++||+ .|.|
T Consensus       139 ~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~--------~~~~~~~~V~~vPt~~i~G~~~~~G  210 (243)
T 2hls_A          139 RVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYEN--------PDIADKYGVMSVPSIAINGYLVFVG  210 (243)
T ss_dssp             CEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTC--------HHHHHHTTCCSSSEEEETTEEEEES
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccC--------HHHHHHcCCeeeCeEEECCEEEEeC
Confidence            344778999999999999999877432       12  447888754        48899999999999999998 6999


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus       211 ~~~~~~l~~~l  221 (243)
T 2hls_A          211 VPYEEDFLDYV  221 (243)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999998765

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.24  E-value=1.5e-11  Score=102.18  Aligned_cols=74  Identities=18%  Similarity=0.198  Sum_probs=59.9

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||+|+++++.|.+.+.   .++  ..|||+.+        .++|++++|+++||+++  ||+   ++.
T Consensus        24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~   95 (140)
T 3hz4_A           24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATN--------PWTAEKYGVQGTPTFKFFCHGRPVWEQV   95 (140)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTC--------HHHHHHHTCCEESEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcC--------HhHHHHCCCCcCCEEEEEeCCcEEEEEc
Confidence            4445789999999999999999977542   123  46777644        58999999999999988  887   689


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus        96 G~~~~~~l~~~l  107 (140)
T 3hz4_A           96 GQIYPSILKNAV  107 (140)
T ss_dssp             SSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            999999998775

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.23  E-value=3.8e-11  Score=95.34  Aligned_cols=74  Identities=19%  Similarity=0.324  Sum_probs=58.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.  ..+.  .|||+.+        .+++++++|+++||+.+  ||+   ++.|
T Consensus        26 ~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   97 (112)
T 1syr_A           26 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEV--------SEVTEKENITSMPTFKVYKNGSSVDTLLG   97 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTT--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCC--------HHHHHHcCCCcccEEEEEECCcEEEEEeC
Confidence            3445778999999999999999977542  2343  5777643        48899999999999887  887   4889


Q ss_pred             CCCHHHHHHHhC
Q 019491          321 EQDLSDLAKASG  332 (340)
Q Consensus       321 ~r~l~~La~~sg  332 (340)
                      . +.++|.++..
T Consensus        98 ~-~~~~l~~~l~  108 (112)
T 1syr_A           98 A-NDSALKQLIE  108 (112)
T ss_dssp             C-CHHHHHHHHH
T ss_pred             C-CHHHHHHHHH
Confidence            8 9999988763

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.23  E-value=2.4e-11  Score=101.28  Aligned_cols=75  Identities=19%  Similarity=0.321  Sum_probs=60.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+||+||+++++.|.+.+.   .++.  .||++.+        .+++++++|+++||+++  ||+   +|.
T Consensus        55 ~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~  126 (148)
T 3p2a_A           55 DLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE--------PALSTRFRIRSIPTIMLYRNGKMIDMLN  126 (148)
T ss_dssp             SSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEES
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCC--------HHHHHHCCCCccCEEEEEECCeEEEEEe
Confidence            4445778999999999999999987542   2343  5676643        58999999999999887  886   599


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.++|.++..
T Consensus       127 G~~~~~~l~~~l~  139 (148)
T 3p2a_A          127 GAVPKAPFDNWLD  139 (148)
T ss_dssp             SCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence            9999999998764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.23  E-value=4.2e-11  Score=95.85  Aligned_cols=73  Identities=18%  Similarity=0.299  Sum_probs=58.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.  ..+  -.|||+.+        .+++++++|+++||+.+  ||+   ++.|
T Consensus        34 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G  105 (122)
T 2vlu_A           34 KKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDEL--------KPIAEQFSVEAMPTFLFMKEGDVKDRVVG  105 (122)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCC--------HHHHHHcCCCcccEEEEEeCCEEEEEEeC
Confidence            4455789999999999999999987542  223  46777643        58999999999999887  887   5899


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .+ .++|.++.
T Consensus       106 ~~-~~~l~~~l  115 (122)
T 2vlu_A          106 AI-KEELTAKV  115 (122)
T ss_dssp             SC-HHHHHHHH
T ss_pred             cC-HHHHHHHH
Confidence            99 89988775

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.23  E-value=2.7e-11  Score=95.62  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.  ..+  -.|||+.+       ..+++++++|+++||+++  ||+   ++.|
T Consensus        24 ~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-------~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G   96 (111)
T 2pu9_C           24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQE-------NKTLAKELGIRVVPTFKILKENSVVGEVTG   96 (111)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSST-------THHHHHHHCCSBSSEEEEESSSSEEEEEES
T ss_pred             CCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcc-------hHHHHHHcCCCeeeEEEEEeCCcEEEEEcC
Confidence            3445789999999999999999987542  223  35777632       258999999999999777  776   5889


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .+ .++|.++.
T Consensus        97 ~~-~~~l~~~l  106 (111)
T 2pu9_C           97 AK-YDKLLEAI  106 (111)
T ss_dssp             SC-HHHHHHHH
T ss_pred             CC-HHHHHHHH
Confidence            85 88888764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.23  E-value=4.3e-11  Score=96.27  Aligned_cols=74  Identities=16%  Similarity=0.272  Sum_probs=57.0

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.+  .+.  .|||+.+       ..+++++++|+++||..+  ||+   ++.|
T Consensus        37 ~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G  109 (124)
T 1faa_A           37 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE-------NKTLAKELGIRVVPTFKILKENSVVGEVTG  109 (124)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSST-------THHHHHHHCCSSSSEEEEEETTEEEEEEES
T ss_pred             CCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcc-------hHHHHHHcCCCeeeEEEEEeCCcEEEEEcC
Confidence            44557889999999999999999875422  243  5666532       258999999999999877  887   5789


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .+ .++|.++.
T Consensus       110 ~~-~~~l~~~i  119 (124)
T 1faa_A          110 AK-YDKLLEAI  119 (124)
T ss_dssp             SC-HHHHHHHH
T ss_pred             CC-HHHHHHHH
Confidence            87 88888764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.23  E-value=5.6e-11  Score=92.01  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=57.2

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.   ..  +-.|||+.+        .++|++++|+++||+.+  ||+   ++.
T Consensus        20 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~   91 (106)
T 1xwb_A           20 GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC--------EDIAMEYNISSMPTFVFLKNGVKVEEFA   91 (106)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccch--------HHHHHHcCCCcccEEEEEcCCcEEEEEc
Confidence            4455778999999999999999877432   22  336777643        58999999999999887  887   588


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      | .+.++|.++.
T Consensus        92 g-~~~~~l~~~i  102 (106)
T 1xwb_A           92 G-ANAKRLEDVI  102 (106)
T ss_dssp             S-CCHHHHHHHH
T ss_pred             C-CCHHHHHHHH
Confidence            9 7889988765

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.21  E-value=5.7e-11  Score=91.64  Aligned_cols=73  Identities=19%  Similarity=0.355  Sum_probs=56.9

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+++|||||+++++.|.+.+.+  .+  ..|||+.+        .+++++++|+++||+.+  ||+   ++.|
T Consensus        19 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G   90 (104)
T 2vim_A           19 GRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQN--------EEAAAKYSVTAMPTFVFIKDGKEVDRFSG   90 (104)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCC--------HHHHHHcCCccccEEEEEeCCcEEEEEeC
Confidence            34457789999999999999999875422  34  35676543        58899999999999887  887   5788


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                       .+.++|.++.
T Consensus        91 -~~~~~l~~~l  100 (104)
T 2vim_A           91 -ANETKLRETI  100 (104)
T ss_dssp             -SCHHHHHHHH
T ss_pred             -CCHHHHHHHH
Confidence             6889988765

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.21  E-value=5.9e-11  Score=97.49  Aligned_cols=75  Identities=19%  Similarity=0.258  Sum_probs=58.2

Q ss_pred             hhcccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Ee
Q 019491          248 HLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VL  318 (340)
Q Consensus       248 ~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y  318 (340)
                      .-.+.-+++|+|+|||||+++++.|.+.+.+  .+.  .|||+.+        .+++++++|+++||+++  ||+   ++
T Consensus        44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~  115 (139)
T 3d22_A           44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDEL--------SDFSASWEIKATPTFFFLRDGQQVDKL  115 (139)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTS--------HHHHHHTTCCEESEEEEEETTEEEEEE
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCccc--------HHHHHHcCCCcccEEEEEcCCeEEEEE
Confidence            3355567899999999999999999875422  243  5777643        58999999999999887  887   57


Q ss_pred             eCCCCHHHHHHHh
Q 019491          319 SGEQDLSDLAKAS  331 (340)
Q Consensus       319 ~G~r~l~~La~~s  331 (340)
                      .|. +.++|.++.
T Consensus       116 ~G~-~~~~l~~~l  127 (139)
T 3d22_A          116 VGA-NKPELHKKI  127 (139)
T ss_dssp             ESC-CHHHHHHHH
T ss_pred             eCC-CHHHHHHHH
Confidence            888 788888765

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.21  E-value=2.6e-11  Score=99.69  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=57.7

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc---cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE---CCE--EeeCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ--VLSGEQ  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~---~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~--~y~G~r  322 (340)
                      -+++|+|+|||||+++.+.|.+.+.+   ++  -.|||+.+        .++|++++|+++||+++   +|+  ++.|.+
T Consensus        54 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~~g~~~~~~G~~  125 (141)
T 3hxs_A           54 AIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKE--------PELARDFGIQSIPTIWFVPMKGEPQVNMGAL  125 (141)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEECSSSCCEEEESCC
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCC--------HHHHHHcCCCCcCEEEEEeCCCCEEEEeCCC
Confidence            37789999999999999999775421   23  36777644        58999999999999887   565  799999


Q ss_pred             CHHHHHHHhC
Q 019491          323 DLSDLAKASG  332 (340)
Q Consensus       323 ~l~~La~~sg  332 (340)
                      +.++|.++..
T Consensus       126 ~~~~l~~~l~  135 (141)
T 3hxs_A          126 SKEQLKGYID  135 (141)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999988753

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.20  E-value=1.6e-11  Score=96.67  Aligned_cols=76  Identities=21%  Similarity=0.374  Sum_probs=59.8

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc------c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC----
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK------Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----  315 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~------~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG----  315 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.+      .  +..|||+.+        .++|++++|+++||+.+  +|    
T Consensus        24 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~   95 (120)
T 1mek_A           24 HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE--------SDLAQQYGVRGYPTIKFFRNGDTAS   95 (120)
T ss_dssp             CSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC--------CSSHHHHTCCSSSEEEEEESSCSSS
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC--------HHHHHHCCCCcccEEEEEeCCCcCC
Confidence            34457899999999999999999774421      2  346777654        37899999999999887  77    


Q ss_pred             -EEeeCCCCHHHHHHHhCC
Q 019491          316 -QVLSGEQDLSDLAKASGF  333 (340)
Q Consensus       316 -~~y~G~r~l~~La~~sg~  333 (340)
                       .+|.|.++.++|.++..-
T Consensus        96 ~~~~~g~~~~~~l~~~l~~  114 (120)
T 1mek_A           96 PKEYTAGREADDIVNWLKK  114 (120)
T ss_dssp             CEECCCCSSHHHHHHHHHT
T ss_pred             cccccCccCHHHHHHHHHh
Confidence             468899999999988743

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.20  E-value=3.6e-11  Score=99.02  Aligned_cols=73  Identities=16%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +.-+++|+|+|||+|+++++.|.+.+.+   +  +..|||+.+        .++|++++|+++||+++  ||+   ++.|
T Consensus        41 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G  112 (128)
T 2o8v_B           41 GAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKVG  112 (128)
T ss_dssp             SEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTC--------CTTSGGGTCCSSSEEEEEETTEEEEEEES
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCccCEEEEEeCCEEEEEEcC
Confidence            3447799999999999999999774321   2  346787754        37899999999999988  897   5899


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus       113 ~~~~~~l~~~l  123 (128)
T 2o8v_B          113 ALSKGQLKEFL  123 (128)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999998875

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.19  E-value=4.6e-11  Score=101.97  Aligned_cols=80  Identities=21%  Similarity=0.384  Sum_probs=62.0

Q ss_pred             HHHHhhc--ccCeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C
Q 019491          244 SLAKHLH--AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N  314 (340)
Q Consensus       244 ~la~~L~--~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n  314 (340)
                      .+.+.++  +.-+++|+|+|||||+++++.|.+.+.+   +  +.+|||+.+        .+++++++|+++||+++  |
T Consensus        56 ~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~  127 (155)
T 2ppt_A           56 ILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAH--------PAVAGRHRIQGIPAFILFHK  127 (155)
T ss_dssp             HHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTS--------THHHHHTTCCSSSEEEEEET
T ss_pred             HHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCcc--------HHHHHHcCCCcCCEEEEEeC
Confidence            4555542  2337789999999999999999774421   2  346777654        48899999999999887  8


Q ss_pred             CE---EeeCCCCHHHHHHHh
Q 019491          315 GQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       315 G~---~y~G~r~l~~La~~s  331 (340)
                      |+   ++.|.++.++|.++.
T Consensus       128 G~~~~~~~G~~~~~~l~~~l  147 (155)
T 2ppt_A          128 GRELARAAGARPASELVGFV  147 (155)
T ss_dssp             TEEEEEEESCCCHHHHHHHH
T ss_pred             CeEEEEecCCCCHHHHHHHH
Confidence            87   489999999998875

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.18  E-value=5.4e-11  Score=105.50  Aligned_cols=75  Identities=19%  Similarity=0.340  Sum_probs=60.2

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---c-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--E
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---K-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--V  317 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~  317 (340)
                      .+.-+++|+|+||+||+++++.|.+.+.   .     .+..|||+.+        .++|++++|++|||..+  +|+  +
T Consensus        32 ~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~  103 (241)
T 3idv_A           32 KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA--------SVLASRFDVSGYPTIKILKKGQAVD  103 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCC--------HHHHHhcCCCcCCEEEEEcCCCccc
Confidence            3445788999999999999999977542   1     2346888754        58999999999999877  776  6


Q ss_pred             eeCCCCHHHHHHHhC
Q 019491          318 LSGEQDLSDLAKASG  332 (340)
Q Consensus       318 y~G~r~l~~La~~sg  332 (340)
                      |.|.++.++|.++..
T Consensus       104 ~~g~~~~~~l~~~i~  118 (241)
T 3idv_A          104 YEGSRTQEEIVAKVR  118 (241)
T ss_dssp             CCSCSCHHHHHHHHH
T ss_pred             ccCcccHHHHHHHHh
Confidence            899999999987764

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.18  E-value=3.3e-11  Score=118.87  Aligned_cols=73  Identities=21%  Similarity=0.479  Sum_probs=61.4

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      .-+++|+|+||+||+++++.|.+.|.+     .+..|||+.+        .++|++++|++|||+++  +|+   +|.|.
T Consensus        23 ~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Ptl~~~~~g~~~~~~~G~   94 (481)
T 3f8u_A           23 LMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTAN--------TNTCNKYGVSGYPTLKIFRDGEEAGAYDGP   94 (481)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTC--------HHHHHHTTCCEESEEEEEETTEEEEECCSC
T ss_pred             eEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCC--------HHHHHhcCCCCCCEEEEEeCCceeeeecCc
Confidence            347789999999999999999886522     2458999864        58999999999999887  885   69999


Q ss_pred             CCHHHHHHHhC
Q 019491          322 QDLSDLAKASG  332 (340)
Q Consensus       322 r~l~~La~~sg  332 (340)
                      ++.++|.++..
T Consensus        95 ~~~~~l~~~~~  105 (481)
T 3f8u_A           95 RTADGIVSHLK  105 (481)
T ss_dssp             SSHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            99999998864

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=1.2e-10  Score=94.11  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=66.7

Q ss_pred             ccCCCchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHH---hHHh---hccCc--eeECCCCCCCCChhhHhhhhhCCC
Q 019491          234 ITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF---GSEA---VKQLN--YVECFPDGYRKGTKIAKACSDAKI  305 (340)
Q Consensus       234 itt~S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lf---gk~A---~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I  305 (340)
                      ++..+-...+++++.-.+.-+++|+|+|||+|+++++.+   .+.+   ...+.  .|||+.+.      ..++|++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~------~~~~~~~~~v   84 (130)
T 2kuc_A           11 FRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE------GVELRKKYGV   84 (130)
T ss_dssp             CBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTT------HHHHHHHTTC
T ss_pred             cccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcc------hHHHHHHcCC
Confidence            344444556666666666778899999999999999987   2211   11233  46665421      3589999999


Q ss_pred             cccceeEE---CCE---EeeCCCCHHHHHHHhC
Q 019491          306 EGFPTWVI---NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       306 ~GyPTw~i---nG~---~y~G~r~l~~La~~sg  332 (340)
                      +++||+++   ||+   ++.|.++.++|.++..
T Consensus        85 ~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~  117 (130)
T 2kuc_A           85 HAYPTLLFINSSGEVVYRLVGAEDAPELLKKVK  117 (130)
T ss_dssp             CSSCEEEEECTTSCEEEEEESCCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcEEEEecCCCCHHHHHHHHH
Confidence            99999887   676   5889999998887654

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.18  E-value=5.3e-11  Score=93.90  Aligned_cols=72  Identities=17%  Similarity=0.328  Sum_probs=52.9

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc----cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      +.-+++|+|+|||||+++++.|.+.+.+    .+.  .|||+.+        .+++++++|+++||+.+  ||+   ++.
T Consensus        22 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~   93 (112)
T 3d6i_A           22 KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADEN--------SEISELFEISAVPYFIIIHKGTILKELS   93 (112)
T ss_dssp             CCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccC--------HHHHHHcCCCcccEEEEEECCEEEEEec
Confidence            3447789999999999999999875432    233  5776543        58999999999999887  887   578


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.. .++|.++.
T Consensus        94 G~~-~~~l~~~l  104 (112)
T 3d6i_A           94 GAD-PKEYVSLL  104 (112)
T ss_dssp             SCC-HHHHHHHH
T ss_pred             CCC-HHHHHHHH
Confidence            874 46677664

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.18  E-value=5.7e-11  Score=98.02  Aligned_cols=73  Identities=18%  Similarity=0.282  Sum_probs=57.7

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhh---ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE---CCE--EeeCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ--VLSGE  321 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~--~y~G~  321 (340)
                      .-+++|+|+|||||+++++.|.+.+.   .++  ..|||+.+        .++|++++|+++||+++   ||+  ++.|.
T Consensus        40 ~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~~G~~~~~~G~  111 (136)
T 2l5l_A           40 PAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKE--------QELAGAFGIRSIPSILFIPMEGKPEMAQGA  111 (136)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHTTCCSSCEEEEECSSSCCEEEESC
T ss_pred             EEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--------HHHHHHcCCCCCCEEEEECCCCcEEEEeCC
Confidence            34779999999999999999977432   123  46777643        48999999999999876   676  58999


Q ss_pred             CCHHHHHHHhC
Q 019491          322 QDLSDLAKASG  332 (340)
Q Consensus       322 r~l~~La~~sg  332 (340)
                      ++.++|.++..
T Consensus       112 ~~~~~l~~~l~  122 (136)
T 2l5l_A          112 MPKASFKKAID  122 (136)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999887653

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.18  E-value=5.4e-11  Score=118.37  Aligned_cols=74  Identities=22%  Similarity=0.446  Sum_probs=61.2

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----E
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----V  317 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-----~  317 (340)
                      +.-+++|+||||+||+++++.|.+.|.+      .+..|||+.+        .++|++++|+||||+++  +|+     +
T Consensus        32 ~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~  103 (504)
T 2b5e_A           32 DLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN--------QDLCMEHNIPGFPSLKIFKNSDVNNSID  103 (504)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTCTTCEEE
T ss_pred             CeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCC--------HHHHHhcCCCcCCEEEEEeCCcccccee
Confidence            3447899999999999999999875421      2458999854        58999999999999887  665     5


Q ss_pred             eeCCCCHHHHHHHhC
Q 019491          318 LSGEQDLSDLAKASG  332 (340)
Q Consensus       318 y~G~r~l~~La~~sg  332 (340)
                      |.|.++.++|.++..
T Consensus       104 ~~G~~~~~~l~~~l~  118 (504)
T 2b5e_A          104 YEGPRTAEAIVQFMI  118 (504)
T ss_dssp             CCSCCSHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHH
Confidence            999999999998864

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.17  E-value=3.3e-11  Score=116.46  Aligned_cols=75  Identities=13%  Similarity=0.042  Sum_probs=59.3

Q ss_pred             cccCeEEEccCCCHHHHHHH------HHHhHHhh------ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC
Q 019491          250 HAIGAKMYGAFWCSHCLEQK------QMFGSEAV------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG  315 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk------~lfgk~A~------~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG  315 (340)
                      ++.-+++|+||||+||+-++      +.|.+.|.      ..+..|||+.+        .++|++++|+||||.++  ||
T Consensus        30 ~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~--------~~l~~~~~V~~~PTl~~f~~G  101 (367)
T 3us3_A           30 YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD--------AAVAKKLGLTEEDSIYVFKED  101 (367)
T ss_dssp             CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTT--------HHHHHHHTCCSTTEEEEEETT
T ss_pred             CCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCccc--------HHHHHHcCCCcCceEEEEECC
Confidence            35557889999999985555      46766442      23568999854        58999999999999887  88


Q ss_pred             E--EeeCCCCHHHHHHHhC
Q 019491          316 Q--VLSGEQDLSDLAKASG  332 (340)
Q Consensus       316 ~--~y~G~r~l~~La~~sg  332 (340)
                      +  +|.|.|+.++|.++..
T Consensus       102 ~~~~y~G~~~~~~i~~~i~  120 (367)
T 3us3_A          102 EVIEYDGEFSADTLVEFLL  120 (367)
T ss_dssp             EEEECCSCCSHHHHHHHHH
T ss_pred             cEEEeCCCCCHHHHHHHHH
Confidence            7  6999999999998863

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.17  E-value=4.4e-11  Score=88.45  Aligned_cols=68  Identities=10%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             EEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE-eeCCC-CHHHHHH
Q 019491          255 KMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV-LSGEQ-DLSDLAK  329 (340)
Q Consensus       255 ~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~-y~G~r-~l~~La~  329 (340)
                      +.|+|+|||||+++++.+.+.+.+   ++..++.+ +        .++++++||+++||.++||+. +.|.+ +.++|.+
T Consensus         4 v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-~--------~~~~~~~~v~~~Pt~~~~G~~~~~G~~~~~~~l~~   74 (77)
T 1ilo_A            4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK-E--------MDQILEAGLTALPGLAVDGELKIMGRVASKEEIKK   74 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-S--------HHHHHHHTCSSSSCEEETTEEEECSSCCCHHHHHH
T ss_pred             EEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec-C--------HHHHHHCCCCcCCEEEECCEEEEcCCCCCHHHHHH
Confidence            356689999999999999774321   33344443 2        478999999999999999984 56998 9999988


Q ss_pred             Hh
Q 019491          330 AS  331 (340)
Q Consensus       330 ~s  331 (340)
                      +.
T Consensus        75 ~l   76 (77)
T 1ilo_A           75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            74

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.16  E-value=8.9e-11  Score=97.24  Aligned_cols=72  Identities=22%  Similarity=0.424  Sum_probs=56.7

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc-cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE----CCE-----Ee
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI----NGQ-----VL  318 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i----nG~-----~y  318 (340)
                      +.-+++|+|+|||+|+++++.|.+.+.+ .+.  .||++.+        .+++++++|+++||.++    ||+     ++
T Consensus        41 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~  112 (133)
T 3cxg_A           41 SSIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDIDVDIH--------PKLNDQHNIKALPTFEFYFNLNNEWVLVHTV  112 (133)
T ss_dssp             SEEEEEEECTTCHHHHHTHHHHHGGGGTEECEEEEEETTTC--------HHHHHHTTCCSSSEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHhcCEEEEEEeccch--------HHHHHhcCCCCCCEEEEEEecCCCeEEEEEE
Confidence            4557899999999999999999875432 233  5666543        58999999999999765    887     68


Q ss_pred             eCCCCHHHHHHHh
Q 019491          319 SGEQDLSDLAKAS  331 (340)
Q Consensus       319 ~G~r~l~~La~~s  331 (340)
                      .|. +.++|.++.
T Consensus       113 ~G~-~~~~l~~~l  124 (133)
T 3cxg_A          113 EGA-NQNDIEKAF  124 (133)
T ss_dssp             ESC-CHHHHHHHH
T ss_pred             cCC-CHHHHHHHH
Confidence            898 888888765

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.16  E-value=4.5e-11  Score=96.65  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeE--CCCCCCCCChhhHhhhhhCCCcccceeEE---CCE---E
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVE--CFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---V  317 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVe--C~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~---~  317 (340)
                      +.-+++|+|+|||||+++++.|.+.+.   ..+.  .||  ++.        ..+++++++|+++||.++   ||+   +
T Consensus        27 k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~--------~~~~~~~~~v~~~Pt~~~~~~~G~~~~~   98 (126)
T 2l57_A           27 IPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK--------NIDLAYKYDANIVPTTVFLDKEGNKFYV   98 (126)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSH--------HHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--------hHHHHHHcCCcceeEEEEECCCCCEEEE
Confidence            344778999999999999999876432   2333  566  443        358999999999999888   686   5


Q ss_pred             eeCCCCHHHHHHHhCC
Q 019491          318 LSGEQDLSDLAKASGF  333 (340)
Q Consensus       318 y~G~r~l~~La~~sg~  333 (340)
                      +.|.++.++|.++..-
T Consensus        99 ~~G~~~~~~l~~~l~~  114 (126)
T 2l57_A           99 HQGLMRKNNIETILNS  114 (126)
T ss_dssp             EESCCCHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHH
Confidence            8999999999877643

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.16  E-value=1.5e-10  Score=94.56  Aligned_cols=73  Identities=22%  Similarity=0.359  Sum_probs=56.8

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+|+|||+|+++++.|.+.+.+  .+.  .||++.+        .+++++++|+++||+++  ||+   ++.|
T Consensus        38 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G  109 (124)
T 1xfl_A           38 KTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDEL--------KSVASDWAIQAMPTFMFLKEGKILDKVVG  109 (124)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTS--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccC--------HHHHHHcCCCccCEEEEEECCEEEEEEeC
Confidence            44557789999999999999999875432  333  5666533        58999999999999887  887   5788


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                       .+.++|.++.
T Consensus       110 -~~~~~l~~~l  119 (124)
T 1xfl_A          110 -AKKDELQSTI  119 (124)
T ss_dssp             -CCHHHHHHHH
T ss_pred             -CCHHHHHHHH
Confidence             4888888764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.16  E-value=9.8e-11  Score=104.98  Aligned_cols=75  Identities=17%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+|||||+++++.|.+.+.+   +  +..|||+.+        .++|++++|+++||+++  ||+   ++.
T Consensus        30 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~  101 (222)
T 3dxb_A           30 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKV  101 (222)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------TTTGGGGTCCSBSEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCC--------HHHHHHcCCCcCCEEEEEECCeEEEEec
Confidence            34447789999999999999999875421   2  346788754        37899999999999887  886   689


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.++|.++..
T Consensus       102 G~~~~~~l~~~l~  114 (222)
T 3dxb_A          102 GALSKGQLKEFLD  114 (222)
T ss_dssp             SCCCHHHHHHHHH
T ss_pred             cccChHHHHHHHH
Confidence            9999999998765

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.16  E-value=1.1e-10  Score=95.99  Aligned_cols=72  Identities=18%  Similarity=0.394  Sum_probs=57.1

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      +.-+++|+|+|||+|+++++.|.+.+.+  .+  ..|||+.+        .++|++++|+++||+++  ||+   ++.| 
T Consensus        38 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~--------~~l~~~~~v~~~Pt~~i~~~G~~~~~~~G-  108 (125)
T 1r26_A           38 ILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNN--------SEIVSKCRVLQLPTFIIARSGKMLGHVIG-  108 (125)
T ss_dssp             SCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEES-
T ss_pred             CEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCC--------HHHHHHcCCCcccEEEEEeCCeEEEEEeC-
Confidence            3447789999999999999999875422  33  46777643        58999999999999887  887   5889 


Q ss_pred             CCHHHHHHHh
Q 019491          322 QDLSDLAKAS  331 (340)
Q Consensus       322 r~l~~La~~s  331 (340)
                      .+.++|.++.
T Consensus       109 ~~~~~l~~~l  118 (125)
T 1r26_A          109 ANPGMLRQKL  118 (125)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            6889988765

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.15  E-value=1e-10  Score=103.70  Aligned_cols=77  Identities=18%  Similarity=0.313  Sum_probs=61.6

Q ss_pred             hhcccCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---E
Q 019491          248 HLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---V  317 (340)
Q Consensus       248 ~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~  317 (340)
                      .-.+.-+++|+|+|||||+++++.|.+.+.+     .+..|||+.+        .++|++++|+++||+++  +|+   +
T Consensus       112 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~  183 (210)
T 3apq_A          112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD--------RMLCRMKGVNSYPSLFIFRSGMAAVK  183 (210)
T ss_dssp             HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTC--------HHHHHHTTCCSSSEEEEECTTSCCEE
T ss_pred             ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCcc--------HHHHHHcCCCcCCeEEEEECCCceeE
Confidence            3345557899999999999999999875421     2447888754        48999999999999887  776   6


Q ss_pred             eeCCCCHHHHHHHhC
Q 019491          318 LSGEQDLSDLAKASG  332 (340)
Q Consensus       318 y~G~r~l~~La~~sg  332 (340)
                      +.|.++.++|.++..
T Consensus       184 ~~G~~~~~~l~~~i~  198 (210)
T 3apq_A          184 YNGDRSKESLVAFAM  198 (210)
T ss_dssp             CCSCCCHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHH
Confidence            999999999988763

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.15  E-value=1.1e-10  Score=96.33  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=57.6

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      -+++|+|+|||||+++++.|.+.+.+   +  +-.|||+.+        .+++++++|+++||+++  ||+   ++.|.+
T Consensus        53 vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~  124 (140)
T 1v98_A           53 TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEH--------PGLAARYGVRSVPTLVLFRRGAPVATWVGAS  124 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEESCC
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCC--------HHHHHHCCCCccCEEEEEeCCcEEEEEeCCC
Confidence            46789999999999999999774321   2  346777643        58999999999999887  887   489999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus       125 ~~~~l~~~i  133 (140)
T 1v98_A          125 PRRVLEERL  133 (140)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999998875

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.15  E-value=2.1e-10  Score=90.58  Aligned_cols=73  Identities=19%  Similarity=0.316  Sum_probs=56.6

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+++|||||+++++.|.+.+.+  .+.  .||++.+        .+++++++|+++||+++  ||+   ++.|
T Consensus        28 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g   99 (118)
T 2vm1_A           28 GKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDEL--------KDVAEAYNVEAMPTFLFIKDGEKVDSVVG   99 (118)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTS--------HHHHHHTTCCSBSEEEEEETTEEEEEEES
T ss_pred             CCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccC--------HHHHHHcCCCcCcEEEEEeCCeEEEEecC
Confidence            45568889999999999999999875432  343  5666543        58899999999999887  887   5788


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                       .+.++|.++.
T Consensus       100 -~~~~~l~~~l  109 (118)
T 2vm1_A          100 -GRKDDIHTKI  109 (118)
T ss_dssp             -CCHHHHHHHH
T ss_pred             -CCHHHHHHHH
Confidence             5788887764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.15  E-value=8.7e-11  Score=103.83  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh--hc-----c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA--VK-----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A--~~-----~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      +++|+|+|||||+++++.|.+.+  ..     .  +..|||+.+        .++|++++|+++||.++  ||+   +|.
T Consensus       138 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~  209 (226)
T 1a8l_A          138 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY--------PEWADQYNVMAVPKIVIQVNGEDRVEFE  209 (226)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC--------HHHHHHTTCCSSCEEEEEETTEEEEEEE
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccC--------HHHHHhCCCcccCeEEEEeCCceeEEEc
Confidence            77899999999999999987643  21     3  346788743        48899999999999877  775   699


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++.++|.++.
T Consensus       210 G~~~~~~l~~~l  221 (226)
T 1a8l_A          210 GAYPEKMFLEKL  221 (226)
T ss_dssp             SCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            999999998875

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.14  E-value=6.9e-11  Score=97.80  Aligned_cols=87  Identities=16%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCC-ChhhHhhhhhCCCcccceeEE--CCE--
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRK-GTKIAKACSDAKIEGFPTWVI--NGQ--  316 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~-~~k~~~lC~~~~I~GyPTw~i--nG~--  316 (340)
                      +.+.+++.-+++|+|+|||||+++++.|.+.+.+   .+-.|||+.+.... ..+..+++++++|+++||.++  ||+  
T Consensus        26 ~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~G~~v  105 (135)
T 3emx_A           26 FRQLLQGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIV  105 (135)
T ss_dssp             HHHHHTSSEEEEEEETTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEETTEEE
T ss_pred             HHHHhCCcEEEEEECCcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEcCCEEE
Confidence            3344444557789999999999999999876432   24478884321000 012468999999999999887  887  


Q ss_pred             -EeeCCCCHHHHHHHh
Q 019491          317 -VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 -~y~G~r~l~~La~~s  331 (340)
                       ++.|.++.+.+.++.
T Consensus       106 ~~~~G~~~~~~~~~~i  121 (135)
T 3emx_A          106 DKLVGATPWSLKVEKA  121 (135)
T ss_dssp             EEEESCCCHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHH
Confidence             689999999888765

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.14  E-value=1.4e-10  Score=93.81  Aligned_cols=72  Identities=25%  Similarity=0.417  Sum_probs=56.4

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---c-Cc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q-LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~-l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      +.-+++|+|+|||+|+++++.|.+.+.+   + +.  .|||+.+        .+++++++|+++||+++  ||+   ++.
T Consensus        34 k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~  105 (121)
T 2j23_A           34 KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQ--------SQIAQEVGIRAMPTFVFFKNGQKIDTVV  105 (121)
T ss_dssp             SCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTC--------HHHHHHHTCCSSSEEEEEETTEEEEEEE
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCC--------HHHHHHcCCCcccEEEEEECCeEEeeEc
Confidence            3347799999999999999999774321   1 44  5666543        58899999999999887  887   589


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |. +.++|.++.
T Consensus       106 G~-~~~~l~~~l  116 (121)
T 2j23_A          106 GA-DPSKLQAAI  116 (121)
T ss_dssp             SS-CHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            98 999998875

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.14  E-value=6.8e-11  Score=94.64  Aligned_cols=73  Identities=21%  Similarity=0.342  Sum_probs=55.9

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E--EeeC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q--VLSG  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~--~y~G  320 (340)
                      +.-+++|+|+|||||+++++.|.+.+.+   .+  ..|||+.+        .++|++++|+++||+.+  +| +  ++.|
T Consensus        22 ~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~~~~~~~~~g   93 (122)
T 3aps_A           22 THWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAY--------PQTCQKAGIKAYPSVKLYQYERAKKSIWE   93 (122)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEEEEGGGTEEEE
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCC--------HHHHHHcCCCccceEEEEeCCCccceeec
Confidence            3347799999999999999999774321   33  46777643        48999999999999887  33 2  5777


Q ss_pred             C----CCHHHHHHHh
Q 019491          321 E----QDLSDLAKAS  331 (340)
Q Consensus       321 ~----r~l~~La~~s  331 (340)
                      .    ++.++|.++.
T Consensus        94 ~~~~~~~~~~l~~~l  108 (122)
T 3aps_A           94 EQINSRDAKTIAALI  108 (122)
T ss_dssp             EEECCSCHHHHHHHH
T ss_pred             cccCcCCHHHHHHHH
Confidence            6    8999998775

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.14  E-value=3.9e-11  Score=97.42  Aligned_cols=74  Identities=27%  Similarity=0.469  Sum_probs=55.2

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc-----cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----  316 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-----  316 (340)
                      +.-+++|+|+|||||+++++.|.+.+.+     .+  ..|||+.+        ..+|++++|+++||+++  +|+     
T Consensus        26 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~   97 (133)
T 2dj3_A           26 KDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN--------DITNDQYKVEGFPTIYFAPSGDKKNPI   97 (133)
T ss_dssp             SEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTS--------CCCCSSCCCSSSSEEEEECTTCTTSCE
T ss_pred             CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcC--------HHHHhhcCCCcCCEEEEEeCCCcccce
Confidence            3447899999999999999999774321     23  35666643        36788899999999887  442     


Q ss_pred             Eee-CCCCHHHHHHHhC
Q 019491          317 VLS-GEQDLSDLAKASG  332 (340)
Q Consensus       317 ~y~-G~r~l~~La~~sg  332 (340)
                      +|. |.++.++|.++..
T Consensus        98 ~~~gg~~~~~~l~~~l~  114 (133)
T 2dj3_A           98 KFEGGNRDLEHLSKFID  114 (133)
T ss_dssp             ECCSSCCSTTHHHHHHH
T ss_pred             EecCCCcCHHHHHHHHH
Confidence            477 6699999887753

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.13  E-value=1.2e-10  Score=91.37  Aligned_cols=73  Identities=21%  Similarity=0.359  Sum_probs=56.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+++|||||+++++.|.+.+.+  .+  -.||++.+        .+++++++|+++||+.+  ||+   ++.|
T Consensus        26 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~g   97 (113)
T 1ti3_A           26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDEL--------KAVAEEWNVEAMPTFIFLKDGKLVDKTVG   97 (113)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTC--------HHHHHHHHCSSTTEEEEEETTEEEEEEEC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcccc--------HHHHHhCCCCcccEEEEEeCCEEEEEEec
Confidence            34457789999999999999999875432  23  35666543        58899999999999887  887   5788


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                       .+.++|.++.
T Consensus        98 -~~~~~l~~~l  107 (113)
T 1ti3_A           98 -ADKDGLPTLV  107 (113)
T ss_dssp             -CCTTHHHHHH
T ss_pred             -CCHHHHHHHH
Confidence             5778887764

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.12  E-value=2.3e-10  Score=96.53  Aligned_cols=73  Identities=21%  Similarity=0.342  Sum_probs=56.4

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+|+|||+|+++++.|.+.+.+  .+  ..|||+.+        .++|++++|+++||+++  ||+   ++.|
T Consensus        32 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G  103 (153)
T 2wz9_A           32 KSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGV--------PEVSEKYEISSVPTFLFFKNSQKIDRLDG  103 (153)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTS--------HHHHHHTTCCSSSEEEEEETTEEEEEEES
T ss_pred             CCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCC--------HHHHHHcCCCCCCEEEEEECCEEEEEEeC
Confidence            34557799999999999999999875432  34  46777643        48999999999999887  887   4778


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      . +.++|.++.
T Consensus       104 ~-~~~~l~~~i  113 (153)
T 2wz9_A          104 A-HAPELTKKV  113 (153)
T ss_dssp             S-CHHHHHHHH
T ss_pred             C-CHHHHHHHH
Confidence            4 677777665

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.12  E-value=5.4e-11  Score=94.85  Aligned_cols=71  Identities=24%  Similarity=0.425  Sum_probs=54.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--c------cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E-
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K------QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q-  316 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~-  316 (340)
                      +.-+++|+|+|||||+++++.|.+.+.  +      .+  ..|||+.+         ++++  +|++|||.++  +| + 
T Consensus        26 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------~~~~--~v~~~Pt~~~~~~~~~~   94 (121)
T 2djj_A           26 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN---------DVPD--EIQGFPTIKLYPAGAKG   94 (121)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS---------CCSS--CCSSSSEEEEECSSCTT
T ss_pred             CCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc---------cccc--ccCcCCeEEEEeCcCCC
Confidence            344789999999999999999976431  1      23  46788644         2454  9999999887  43 4 


Q ss_pred             ---EeeCCCCHHHHHHHhC
Q 019491          317 ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       317 ---~y~G~r~l~~La~~sg  332 (340)
                         +|.|.++.++|.++..
T Consensus        95 ~~~~~~G~~~~~~l~~~i~  113 (121)
T 2djj_A           95 QPVTYSGSRTVEDLIKFIA  113 (121)
T ss_dssp             SCCCCCCCSCHHHHHHHHH
T ss_pred             CceEecCCCCHHHHHHHHH
Confidence               6999999999998763

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.11  E-value=1.5e-10  Score=94.30  Aligned_cols=85  Identities=18%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHh--HHhh---ccC--ceeECCCCCCCCChhhHhhhhhCCC---ccccee
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFG--SEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKI---EGFPTW  311 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfg--k~A~---~~l--~yVeC~~~g~~~~~k~~~lC~~~~I---~GyPTw  311 (340)
                      .++.++.-.+.-+++|+|+|||||+++++.|.  +.+.   ..+  -.||++....     ..+++++++|   +++||+
T Consensus        21 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~-----~~~l~~~~~v~~~~~~Pt~   95 (133)
T 3fk8_A           21 ALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDR-----NLELSQAYGDPIQDGIPAV   95 (133)
T ss_dssp             HHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTS-----SHHHHHHTTCGGGGCSSEE
T ss_pred             HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccc-----hHHHHHHhCCccCCccceE
Confidence            33334444555688999999999999999998  4321   233  3677742111     3589999999   999998


Q ss_pred             EE---CCE---EeeC-------CCCHHHHHHHh
Q 019491          312 VI---NGQ---VLSG-------EQDLSDLAKAS  331 (340)
Q Consensus       312 ~i---nG~---~y~G-------~r~l~~La~~s  331 (340)
                      ++   +|+   ++.|       ..+.++|.++.
T Consensus        96 ~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l  128 (133)
T 3fk8_A           96 VVVNSDGKVRYTTKGGELANARKMSDQGIYDFF  128 (133)
T ss_dssp             EEECTTSCEEEECCSCTTTTGGGSCHHHHHHHH
T ss_pred             EEECCCCCEEEEecCCcccccccCCHHHHHHHH
Confidence            86   676   4667       67888888765

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.10  E-value=1.2e-10  Score=103.60  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=58.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE--EeeCCCCHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ--VLSGEQDLSDL  327 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~--~y~G~r~l~~L  327 (340)
                      +++|+|+|||||+++.+.|.+.+.+    .+..|||+.+        .++|++++|++|||..+||+  +|.|.++.++|
T Consensus       140 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~G~~~~~~G~~~~~~l  211 (229)
T 2ywm_A          140 IWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASEN--------QDLAEQFQVVGVPKIVINKGVAEFVGAQPENAF  211 (229)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGC--------HHHHHHTTCCSSSEEEEGGGTEEEESCCCHHHH
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCC--------HHHHHHcCCcccCEEEECCEEEEeeCCCCHHHH
Confidence            5679999999999999999875432    2446888754        58999999999999999887  59999999999


Q ss_pred             HHHh
Q 019491          328 AKAS  331 (340)
Q Consensus       328 a~~s  331 (340)
                      .++.
T Consensus       212 ~~~l  215 (229)
T 2ywm_A          212 LGYI  215 (229)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.10  E-value=2.5e-10  Score=108.28  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=62.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc-------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-----
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-----  315 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-----  315 (340)
                      ++.-+++|+||||+||+++.+.|.+.+.+       .+..|||+.+         . |++++|+||||+.+  +|     
T Consensus       267 ~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~---------~-~~~~~v~~~Pt~~~~~~~~~~~~  336 (361)
T 3uem_A          267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN---------E-VEAVKVHSFPTLKFFPASADRTV  336 (361)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTC---------B-CSSCCCCSSSEEEEECSSSSCCC
T ss_pred             CCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCcc---------c-hhhcCCcccCeEEEEECCCCcce
Confidence            44558899999999999999999875421       1457888754         1 77899999999887  34     


Q ss_pred             EEeeCCCCHHHHHHHhCCCCCCC
Q 019491          316 QVLSGEQDLSDLAKASGFPEMSQ  338 (340)
Q Consensus       316 ~~y~G~r~l~~La~~sg~~g~~~  338 (340)
                      .+|.|.++.++|.++..-.+.+.
T Consensus       337 ~~~~G~~~~~~l~~~l~~~~~~~  359 (361)
T 3uem_A          337 IDYNGERTLDGFKKFLESGGQDG  359 (361)
T ss_dssp             EECCSCSSHHHHHHHHTTTSCSC
T ss_pred             eEecCCCCHHHHHHHHHhcCCCC
Confidence            37999999999999998776553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.10  E-value=1.1e-10  Score=107.20  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=60.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---c--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      ++.-+++|+|+|||||+++.|.|.+.+.   .  .+..|||+.+        .++|++++|+++||.++  +|+   ++.
T Consensus        26 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~   97 (287)
T 3qou_A           26 TTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAE--------QMIAAQFGLRAIPTVYLFQNGQPVDGFQ   97 (287)
T ss_dssp             TSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTC--------HHHHHTTTCCSSSEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccC--------HHHHHHcCCCCCCeEEEEECCEEEEEee
Confidence            3445778999999999999999987542   1  2457888754        58999999999999887  886   589


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.+++.++..
T Consensus        98 g~~~~~~l~~~l~  110 (287)
T 3qou_A           98 GPQPEEAIRALLD  110 (287)
T ss_dssp             SCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence            9999999887764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.10  E-value=1.3e-10  Score=103.06  Aligned_cols=74  Identities=20%  Similarity=0.368  Sum_probs=60.1

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--Ee
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VL  318 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y  318 (340)
                      +.-+++|+|+||+||+++++.|.+.|.+        .+..|||+.+        .++|++++|++|||+.+  +|+  .|
T Consensus       148 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~~  219 (241)
T 3idv_A          148 DIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAE--------TDLAKRFDVSGYPTLKIFRKGRPYDY  219 (241)
T ss_dssp             SEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEC
T ss_pred             CeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCC--------HHHHHHcCCcccCEEEEEECCeEEEe
Confidence            4457789999999999999998775421        2346888744        58999999999999887  786  58


Q ss_pred             eCCCCHHHHHHHhC
Q 019491          319 SGEQDLSDLAKASG  332 (340)
Q Consensus       319 ~G~r~l~~La~~sg  332 (340)
                      .|.++.++|.++..
T Consensus       220 ~g~~~~~~l~~~l~  233 (241)
T 3idv_A          220 NGPREKYGIVDYMI  233 (241)
T ss_dssp             CSCCSHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHH
Confidence            99999999998864

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.09  E-value=1.8e-10  Score=95.04  Aligned_cols=89  Identities=15%  Similarity=0.149  Sum_probs=64.4

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHH---hHHh--hccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF---GSEA--VKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI  313 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lf---gk~A--~~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i  313 (340)
                      ....+++.-.+.-+++|+|+|||+|+++++.+   .+.+  .+.+  -.|||+.+.    .+..+++++++|+++||+.+
T Consensus        22 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~----~~~~~l~~~~~v~~~Pt~~~   97 (134)
T 2fwh_A           22 LNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND----AQDVALLKHLNVLGLPTILF   97 (134)
T ss_dssp             HHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC----HHHHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCc----chHHHHHHHcCCCCCCEEEE
Confidence            34455554456668899999999999998765   3322  2233  367776431    12468999999999999886


Q ss_pred             ---CCEE-----eeCCCCHHHHHHHhCC
Q 019491          314 ---NGQV-----LSGEQDLSDLAKASGF  333 (340)
Q Consensus       314 ---nG~~-----y~G~r~l~~La~~sg~  333 (340)
                         ||+.     +.|.++.++|.++...
T Consensus        98 ~d~~G~~v~~~~~~G~~~~~~l~~~l~~  125 (134)
T 2fwh_A           98 FDGQGQEHPQARVTGFMDAETFSAHLRD  125 (134)
T ss_dssp             ECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             ECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence               6763     7899999999988754

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.06  E-value=6.3e-10  Score=94.41  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=56.7

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE------
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ------  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~------  316 (340)
                      .+.-++.|+|+|||||+++++.|.+.+.+     .+-.||++.+        .+++++++|+++||.++  +|+      
T Consensus        23 ~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Pt~~~~~~G~~v~~~~   94 (149)
T 3gix_A           23 EKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQT--------AVYTQYFDISYIPSTVFFFNGQHMKVDY   94 (149)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTC--------CHHHHHTTCCSSSEEEEEETTEEEEEEC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcC--------HHHHHHcCCCccCeEEEEECCeEEEeec
Confidence            34457789999999999999999875422     1336777643        48999999999999877  775      


Q ss_pred             ------EeeC-CCCHHHHHHHh
Q 019491          317 ------VLSG-EQDLSDLAKAS  331 (340)
Q Consensus       317 ------~y~G-~r~l~~La~~s  331 (340)
                            ++.| .++.++|.++.
T Consensus        95 g~~~~~~~~G~~~~~~~l~~~l  116 (149)
T 3gix_A           95 GSPDHTKFVGSFKTKQDFIDLI  116 (149)
T ss_dssp             SSSCCSCEESCCSSHHHHHHHH
T ss_pred             CCCCCCeEeeecCCHHHHHHHH
Confidence                  3578 88888887664

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.63  E-value=1.7e-11  Score=94.24  Aligned_cols=75  Identities=21%  Similarity=0.286  Sum_probs=57.6

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--c-cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--K-QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~-~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+++|||||+++++.|.+.+.  . .+  ..|||+.+        .++|++++|+++||+.+  ||+   ++.
T Consensus        19 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~   90 (106)
T 2yj7_A           19 DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN--------PNTAAQYGIRSIPTLLLFKNGQVVDRLV   90 (106)
Confidence            3445778999999999999998876431  1 23  35666543        47899999999999887  786   589


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.++|.++..
T Consensus        91 g~~~~~~l~~~l~  103 (106)
T 2yj7_A           91 GAQPKEALKERID  103 (106)
Confidence            9999999887753

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.05  E-value=1.1e-09  Score=87.36  Aligned_cols=74  Identities=14%  Similarity=0.133  Sum_probs=54.4

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeC
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG  320 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G  320 (340)
                      +.+.++...+++|+|+|||+|+++++.|.+. ...+.+|+.+.+... ...+.++++++||+++||.++||+...|
T Consensus        13 ~~~~~~~~~vv~f~a~~C~~C~~~~~~l~~~-~~~~~~v~v~~~~~~-~~~~~~l~~~~~v~~~Pt~~~~g~~v~~   86 (116)
T 2e7p_A           13 AKELASSAPVVVFSKTYCGYCNRVKQLLTQV-GASYKVVELDELSDG-SQLQSALAHWTGRGTVPNVFIGGKQIGG   86 (116)
T ss_dssp             HHHHHTSSSEEEEECTTCHHHHHHHHHHHHH-TCCCEEEEGGGSTTH-HHHHHHHHHHHSCCSSCEEEETTEEEEC
T ss_pred             HHHHHcCCCEEEEECCCChhHHHHHHHHHHc-CCCeEEEEccCCCCh-HHHHHHHHHHhCCCCcCEEEECCEEECC
Confidence            3445555668889999999999999999885 344667888755311 0112468999999999999889986543

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.04  E-value=2e-10  Score=90.73  Aligned_cols=78  Identities=9%  Similarity=0.124  Sum_probs=58.7

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhcc---CceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEee
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS  319 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~---l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~  319 (340)
                      ..+.+.+++..+++|+++|||+|+++++.+.+.+ ..   +.+||.+.+.... ..+..+.+..|++++||+++||+...
T Consensus         3 ~~~~~~i~~~~v~~f~~~~C~~C~~~~~~L~~~~-~~~~~~~~vdi~~~~~~~-~~~~~l~~~~g~~~vP~i~~~g~~i~   80 (105)
T 1kte_A            3 AFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLP-FKEGLLEFVDITATSDTN-EIQDYLQQLTGARTVPRVFIGKECIG   80 (105)
T ss_dssp             HHHHHHCCTTCEEEEECSSCHHHHHHHHHHHHSC-BCTTSEEEEEGGGSTTHH-HHHHHHHHHHSCCCSCEEEETTEEEE
T ss_pred             hHHHhhcccCCEEEEEcCCCHhHHHHHHHHHHcC-CCCCccEEEEccCCCCHH-HHHHHHHHHhCCCCcCeEEECCEEEe
Confidence            3456777778899999999999999999998743 33   6678887652101 11246778899999999999999877


Q ss_pred             CCC
Q 019491          320 GEQ  322 (340)
Q Consensus       320 G~r  322 (340)
                      |-.
T Consensus        81 g~~   83 (105)
T 1kte_A           81 GCT   83 (105)
T ss_dssp             SHH
T ss_pred             ccH
Confidence            743

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.03  E-value=2e-10  Score=109.54  Aligned_cols=74  Identities=12%  Similarity=-0.015  Sum_probs=58.6

Q ss_pred             ccCeEEEccCCCHHHHHHHHH-------HhHHhh------ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQM-------FGSEAV------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG  315 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~l-------fgk~A~------~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG  315 (340)
                      +.-+++|+||||+ |++++|.       |.+.|.      ..+..|||+.+        .++|++++|+||||.++  +|
T Consensus        29 ~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g   99 (350)
T 1sji_A           29 DVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKE--------AKLAKKLGFDEEGSLYVLKGD   99 (350)
T ss_dssp             SEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTT--------HHHHHHHTCCSTTEEEEEETT
T ss_pred             CeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCC--------HHHHHhcCCCccceEEEEECC
Confidence            3447789999999 7777666       776442      12557999864        58999999999999887  88


Q ss_pred             E--EeeCCCCHHHHHHHhCC
Q 019491          316 Q--VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       316 ~--~y~G~r~l~~La~~sg~  333 (340)
                      +  +|.|.|+.++|.++..-
T Consensus       100 ~~~~~~G~~~~~~l~~~i~~  119 (350)
T 1sji_A          100 RTIEFDGEFAADVLVEFLLD  119 (350)
T ss_dssp             EEEEECSCCCHHHHHHHHHT
T ss_pred             cEEEecCCCCHHHHHHHHHH
Confidence            7  69999999999998643

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.02  E-value=5.1e-10  Score=101.16  Aligned_cols=74  Identities=27%  Similarity=0.465  Sum_probs=56.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--c------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-----
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-----  315 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-----  315 (340)
                      +.-+++|+|+|||||+++++.|.+.+.  +      .+..|||+.+.      ..++|++++|++|||..+  +|     
T Consensus        31 ~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~------~~~l~~~~~v~~~Pt~~~~~~g~~~~~  104 (244)
T 3q6o_A           31 SAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET------NSAVCRDFNIPGFPTVRFFXAFTXNGS  104 (244)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT------THHHHHHTTCCSSSEEEEECTTCCSSS
T ss_pred             CeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh------hHHHHHHcCCCccCEEEEEeCCCcCCC
Confidence            444778999999999999999977542  1      24579997542      358999999999999887  32     


Q ss_pred             -E--EeeCCCCHHHHHHHh
Q 019491          316 -Q--VLSGEQDLSDLAKAS  331 (340)
Q Consensus       316 -~--~y~G~r~l~~La~~s  331 (340)
                       +  ++.| ++.++|.++.
T Consensus       105 g~~~~~~g-~~~~~l~~~i  122 (244)
T 3q6o_A          105 GAVFPVAG-ADVQTLRERL  122 (244)
T ss_dssp             CEECCCTT-CCHHHHHHHH
T ss_pred             CeeEecCC-CCHHHHHHHH
Confidence             2  4555 7898887764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.02  E-value=6.3e-10  Score=98.29  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             eEEEccC-CCHHHHHHHHHHhHHhh--c--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC----EEeeCCC
Q 019491          254 AKMYGAF-WCSHCLEQKQMFGSEAV--K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QVLSGEQ  322 (340)
Q Consensus       254 ~~~YgA~-WCpHC~~qk~lfgk~A~--~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG----~~y~G~r  322 (340)
                      +++|+|+ |||||+++++.|.+.|.  .  .+..|||+...      ..++|+++||+++||..+  +|    .+|.|.+
T Consensus        26 lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~   99 (226)
T 1a8l_A           26 LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPE------GKELAKRYRIDRAPATTITQDGKDFGVRYFGLP   99 (226)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHH------HHHHHHHTTCCSSSEEEEEETTBCCSEEEESCC
T ss_pred             EEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcc------cHHHHHHcCCCcCceEEEEcCCceeeEEEeccC
Confidence            5789999 99999999999988552  1  24578887410      258999999999999888  66    4799999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.+++.++.
T Consensus       100 ~~~~l~~~l  108 (226)
T 1a8l_A          100 AGHEFAAFL  108 (226)
T ss_dssp             CTTHHHHHH
T ss_pred             cHHHHHHHH
Confidence            988877654

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.59  E-value=2.8e-11  Score=98.14  Aligned_cols=88  Identities=18%  Similarity=0.249  Sum_probs=63.8

Q ss_pred             hhHHHHHHhhcccCeEEEccCCCHHHHHHHHHH---hHHh--h-ccC--ceeECCCCCCCCChhhHhhhhhCCCccccee
Q 019491          240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF---GSEA--V-KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTW  311 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lf---gk~A--~-~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw  311 (340)
                      +..+++++.-.+.-+++|+|+|||+|+++++.+   .+.+  . ..+  -.||++.+.      ..+++++++|+++||+
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~------~~~~~~~~~v~~~Pt~   82 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPE------GQELARRYRVPGTPTF   82 (130)
Confidence            455666666666778899999999999999877   4322  1 123  356665331      2588999999999998


Q ss_pred             EE----CCEE-----eeCCCCHHHHHHHhCC
Q 019491          312 VI----NGQV-----LSGEQDLSDLAKASGF  333 (340)
Q Consensus       312 ~i----nG~~-----y~G~r~l~~La~~sg~  333 (340)
                      ++    ||+.     +.|.++.++|.++...
T Consensus        83 ~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~  113 (130)
T 2lst_A           83 VFLVPKAGAWEEVGRLFGSRPRAEFLKELRQ  113 (130)
Confidence            76    4764     8999998888877643

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.02  E-value=4.8e-10  Score=88.50  Aligned_cols=72  Identities=17%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeE-ECCEEeeCCCCHHHHHHHh
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-INGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~-inG~~y~G~r~l~~La~~s  331 (340)
                      .+++|+|+|||.|+.+|+.+.+.+.+....||.+.|        .++.+++|++ .||.+ +||+...|..+.++|.++.
T Consensus         2 ~vv~f~a~~C~~C~~~~~~L~~~~~~~~~~vdid~~--------~~l~~~~g~~-vPtl~~~~G~~v~g~~~~~~L~~~l   72 (87)
T 1ttz_A            2 ALTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDD--------AALESAYGLR-VPVLRDPMGRELDWPFDAPRLRAWL   72 (87)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTC--------HHHHHHHTTT-CSEEECTTCCEEESCCCHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHhheEEEECCCC--------HHHHHHhCCC-cCeEEEECCEEEeCCCCHHHHHHHH
Confidence            368999999999999999998754433556777644        4788889999 99999 7999877999999999887


Q ss_pred             CC
Q 019491          332 GF  333 (340)
Q Consensus       332 g~  333 (340)
                      +-
T Consensus        73 ~~   74 (87)
T 1ttz_A           73 DA   74 (87)
T ss_dssp             HT
T ss_pred             HH
Confidence            53

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.01  E-value=4.5e-10  Score=90.61  Aligned_cols=90  Identities=22%  Similarity=0.217  Sum_probs=64.5

Q ss_pred             CchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491          238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV  317 (340)
Q Consensus       238 S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~  317 (340)
                      +......+.+.+++..+++|+++|||+|++.|+++.+. .....+||.+.+..+....+..+.+..|++.+|++++||+.
T Consensus         5 ~~~~~~~~~~~i~~~~v~vy~~~~Cp~C~~~~~~L~~~-~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~   83 (113)
T 3rhb_A            5 GSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRL-GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKH   83 (113)
T ss_dssp             -CHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHHT-TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCChhHHHHHHHHHHc-CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEE
Confidence            34566677888888899999999999999999999874 33456788875311111112335555699999999999998


Q ss_pred             eeCCCCHHHHH
Q 019491          318 LSGEQDLSDLA  328 (340)
Q Consensus       318 y~G~r~l~~La  328 (340)
                      +-|-.++.++.
T Consensus        84 igG~~~~~~~~   94 (113)
T 3rhb_A           84 IGGCTDTVKLN   94 (113)
T ss_dssp             EESHHHHHHHH
T ss_pred             EcCcHHHHHHH
Confidence            88866655443

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.01  E-value=3.4e-10  Score=118.39  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .+.-+++|+|+||+||+++++.|.+.|.+     .+..|||+.+        .++|++++|++|||+++  +|+   +|.
T Consensus       133 ~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~  204 (780)
T 3apo_A          133 GELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDD--------RMLCRMKGVNSYPSLFIFRSGMAAVKYN  204 (780)
T ss_dssp             SSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTC--------SSCC--------CEEEEECTTSCCEECC
T ss_pred             CCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCc--------HHHHHHcCCceeeeEEEEeCCcEeeEec
Confidence            34447899999999999999999875422     2568999865        37899999999999887  775   799


Q ss_pred             CCCCHHHHHHHhCC
Q 019491          320 GEQDLSDLAKASGF  333 (340)
Q Consensus       320 G~r~l~~La~~sg~  333 (340)
                      |.++.++|.++.--
T Consensus       205 G~~~~~~l~~~l~~  218 (780)
T 3apo_A          205 GDRSKESLVAFAMQ  218 (780)
T ss_dssp             SCSCHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999999998744

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.1e-10  Score=96.28  Aligned_cols=83  Identities=14%  Similarity=0.205  Sum_probs=58.8

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc----cCc--eeECCCCCCCCChhhHhhhhhCCCc------cc
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLN--YVECFPDGYRKGTKIAKACSDAKIE------GF  308 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~--yVeC~~~g~~~~~k~~~lC~~~~I~------Gy  308 (340)
                      ....++++=...-+++|+|+|||||+++++.|.+.+.+    .+.  .|||+.+        .++|++++|+      ++
T Consensus        17 f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--------~~~~~~~~v~~~~~~~~~   88 (137)
T 2dj0_A           17 IDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRY--------TDVSTRYKVSTSPLTKQL   88 (137)
T ss_dssp             HHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTC--------HHHHHHTTCCCCSSSSCS
T ss_pred             HHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccC--------HHHHHHccCcccCCcCCC
Confidence            33344333223448899999999999999999875421    344  4555532        5899999999      99


Q ss_pred             ceeEE--CCE---EeeCCCCHHHHHHHh
Q 019491          309 PTWVI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       309 PTw~i--nG~---~y~G~r~l~~La~~s  331 (340)
                      ||.++  ||+   ++.|.++.++|.++.
T Consensus        89 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l  116 (137)
T 2dj0_A           89 PTLILFQGGKEAMRRPQIDKKGRAVSWT  116 (137)
T ss_dssp             SEEEEESSSSEEEEESCBCSSSCBCCCC
T ss_pred             CEEEEEECCEEEEEecCcCchHHHHHHH
Confidence            99887  776   588988877665443

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.00  E-value=8.4e-10  Score=89.19  Aligned_cols=73  Identities=16%  Similarity=0.230  Sum_probs=55.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C----CE---
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N----GQ---  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n----G~---  316 (340)
                      .+.-+++|+|+|||+|+++++.|.+.+.+  .+  -.|||+.+        .+++++++|+++||+++  +    |+   
T Consensus        23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~   94 (118)
T 2f51_A           23 PGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKN--------GNAADAYGVSSIPALFFVKKEGNEIKTLD   94 (118)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCSSSEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCC--------HHHHHhcCCCCCCEEEEEeCCCCcceEEE
Confidence            44557799999999999999999775432  33  36777643        48999999999999887  5    66   


Q ss_pred             EeeCCCCHHHHHHHh
Q 019491          317 VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 ~y~G~r~l~~La~~s  331 (340)
                      ++.|.++ ++|.++.
T Consensus        95 ~~~G~~~-~~l~~~~  108 (118)
T 2f51_A           95 QFVGADV-SRIKADI  108 (118)
T ss_dssp             EEESCCH-HHHHHHH
T ss_pred             eecCCCH-HHHHHHH
Confidence            5889876 4576654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.98  E-value=4.2e-10  Score=84.99  Aligned_cols=70  Identities=20%  Similarity=0.375  Sum_probs=51.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhh--ccCce--eECCCCCCCCChhhHhhhhhCC--CcccceeEECCEEeeCCCCHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAV--KQLNY--VECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVLSGEQDLSDL  327 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~--~~l~y--VeC~~~g~~~~~k~~~lC~~~~--I~GyPTw~inG~~y~G~r~l~~L  327 (340)
                      +++|+++|||+|+++++.+.+.+.  ..+.+  ||.+.+..+    ..++.+++|  ++++||..+||+...|.   ++|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~----~~~l~~~~~~~~~~vP~i~~~g~~i~~~---~~l   75 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT----KEDLQQKAGKPVETVPQIFVDQQHIGGY---TDF   75 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCC----SHHHHHHTCCCSCCSCEEEETTEEEESS---HHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHH----HHHHHHHhCCCCceeCeEEECCEEEECH---HHH
Confidence            679999999999999999987432  23554  555443211    247888888  99999999999988775   455


Q ss_pred             HHH
Q 019491          328 AKA  330 (340)
Q Consensus       328 a~~  330 (340)
                      .++
T Consensus        76 ~~~   78 (85)
T 1ego_A           76 AAW   78 (85)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.98  E-value=9.1e-10  Score=97.83  Aligned_cols=66  Identities=15%  Similarity=0.117  Sum_probs=53.7

Q ss_pred             ccCCCHHHHHHHHHHhHHh-----hc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC---EEeeCCCCHH
Q 019491          258 GAFWCSHCLEQKQMFGSEA-----VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG---QVLSGEQDLS  325 (340)
Q Consensus       258 gA~WCpHC~~qk~lfgk~A-----~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG---~~y~G~r~l~  325 (340)
                      .||||+||+++.+.|.+.|     ..  .+..|||+.+        .++|+++||++|||.++  +|   .+|.|.++.+
T Consensus        33 ~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~~~  104 (229)
T 2ywm_A           33 GCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTH--------KEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGL  104 (229)
T ss_dssp             TCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTC--------HHHHHHTTCCBSSEEEEESSSCCCEEEESCCCTT
T ss_pred             CCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCccc--------HHHHHHcCCCcCcEEEEECCCcccceecCCccHH
Confidence            3999999999999998763     22  3558899854        59999999999999988  33   4799999999


Q ss_pred             HHHHHh
Q 019491          326 DLAKAS  331 (340)
Q Consensus       326 ~La~~s  331 (340)
                      +|.++.
T Consensus       105 ~l~~~~  110 (229)
T 2ywm_A          105 EFTTLI  110 (229)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887764

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.98  E-value=4.7e-10  Score=85.00  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE-eeCC-CCHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV-LSGE-QDLSDLA  328 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~-y~G~-r~l~~La  328 (340)
                      +++|+++|||+|+++++.+.+.+.   ..+.+++.+.+..     ..++.+++||+++||.++||+. +.|. .+.++|.
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~gv~~vPt~~i~g~~~~~G~~~~~~~l~   78 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKA-----RIAEAEKAGVKSVPALVIDGAAFHINFGAGIDDLK   78 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSS-----THHHHHHHTCCEEEEEEETTEEEEEEEEEEHHHHC
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChh-----hHHHHHHcCCCcCCEEEECCEEEEeccCcCHHHhh
Confidence            679999999999999998766432   1244667664321     2467788999999999999983 5665 4667663

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.98  E-value=2.1e-09  Score=90.47  Aligned_cols=59  Identities=12%  Similarity=0.099  Sum_probs=45.5

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh---cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEE
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV  317 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~  317 (340)
                      +.-++.|+|+|||||++++|.|.+.+.   .+  +-.||++.+        .+++++++|+++||..+  ||+.
T Consensus        24 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--------~~~~~~~~i~~~Pt~~~~~~G~~   89 (142)
T 1qgv_A           24 RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV--------PDFNKMYELYDPCTVMFFFRNKH   89 (142)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTC--------CTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccC--------HHHHHHcCCCCCCEEEEEECCcE
Confidence            344778999999999999999977432   12  346777744        37899999999999876  7864

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.98  E-value=2.7e-10  Score=91.70  Aligned_cols=73  Identities=21%  Similarity=0.326  Sum_probs=54.7

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .+.-+++|+++|||||+++++.|.+.+.+  .+.  +|||+.+        .+++++++|+++||+++  ||+   ++.|
T Consensus        36 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g  107 (130)
T 1wmj_A           36 GKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDEL--------KEVAEKYNVEAMPTFLFIKDGAEADKVVG  107 (130)
T ss_dssp             TCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTS--------GGGHHHHTCCSSCCCCBCTTTTCCBCCCT
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccch--------HHHHHHcCCCccceEEEEeCCeEEEEEeC
Confidence            55668899999999999999999875432  344  4555432        48899999999999888  776   4778


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                       .+.++|.++.
T Consensus       108 -~~~~~l~~~l  117 (130)
T 1wmj_A          108 -ARKDDLQNTI  117 (130)
T ss_dssp             -TCTTTHHHHH
T ss_pred             -CCHHHHHHHH
Confidence             4666666554

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.97  E-value=2.9e-10  Score=93.04  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=58.1

Q ss_pred             cCeEEEccCCCH--------------HHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491          252 IGAKMYGAFWCS--------------HCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV  312 (340)
Q Consensus       252 ~g~~~YgA~WCp--------------HC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~  312 (340)
                      .-+++|+|+|||              ||+++++.|.+.+.+   +  +..|||+.+        .+++++++|+++||++
T Consensus        23 ~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Pt~~   94 (123)
T 1oaz_A           23 AILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLL   94 (123)
T ss_dssp             EEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSC--------TTTGGGGTCCBSSEEE
T ss_pred             eEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCccCEEE
Confidence            347789999999              999999999774321   2  346888754        3789999999999988


Q ss_pred             E--CCE---EeeCCCCHHHHHHHhC
Q 019491          313 I--NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       313 i--nG~---~y~G~r~l~~La~~sg  332 (340)
                      +  ||+   ++.|.++.++|.++..
T Consensus        95 ~~~~G~~~~~~~G~~~~~~l~~~l~  119 (123)
T 1oaz_A           95 LFKNGEVAATKVGALSKGQLKEFLD  119 (123)
T ss_dssp             EEESSSEEEEEESCCCHHHHHHHHT
T ss_pred             EEECCEEEEEEeCCCCHHHHHHHHH
Confidence            7  886   5999999999998864

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.94  E-value=1.8e-09  Score=89.74  Aligned_cols=69  Identities=19%  Similarity=0.074  Sum_probs=51.9

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC-
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ-  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r-  322 (340)
                      -+++|+|+||+||+++++.|.+.+.+  .+.  .||++.+           .++++|+++||.++  ||+   ++.|.+ 
T Consensus        33 vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~-----------~~~~~i~~~Pt~~~~~~G~~v~~~~G~~~  101 (135)
T 2dbc_A           33 VVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSC-----------IEHYHDNCLPTIFVYKNGQIEGKFIGIIE  101 (135)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSS-----------CSSCCSSCCSEEEEESSSSCSEEEESTTT
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcC-----------cccCCCCCCCEEEEEECCEEEEEEEeEEe
Confidence            47789999999999999999886543  233  4555432           15689999999887  775   688886 


Q ss_pred             ------CHHHHHHHhC
Q 019491          323 ------DLSDLAKASG  332 (340)
Q Consensus       323 ------~l~~La~~sg  332 (340)
                            +.++|.++..
T Consensus       102 ~~~~~~~~~~l~~~l~  117 (135)
T 2dbc_A          102 CGGINLKLEELEWKLS  117 (135)
T ss_dssp             TTCTTCCHHHHHHHHH
T ss_pred             eCCCcCCHHHHHHHHH
Confidence                  6788876654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.92  E-value=1.6e-09  Score=81.41  Aligned_cols=73  Identities=12%  Similarity=0.135  Sum_probs=55.0

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF  333 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg~  333 (340)
                      +++|+++|||+|+++++.+.+. ...+.+||.+.+.  .   ..+..++.|++++||.++||+...| .+.++|.++..-
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-~i~~~~vdi~~~~--~---~~~~~~~~g~~~vP~~~~~g~~~~g-~~~~~l~~~l~~   75 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-GFDFEMINVDRVP--E---AAEALRAQGFRQLPVVIAGDLSWSG-FRPDMINRLHPA   75 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-TCCCEEEETTTCH--H---HHHHHHHTTCCSSCEEEETTEEEES-CCHHHHGGGSCC
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-CCCeEEEECCCCH--H---HHHHHHHhCCCccCEEEECCEEEec-CCHHHHHHHHhc
Confidence            6799999999999999999874 3345567776442  1   2334456899999999999987766 567888887753

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.91  E-value=3.6e-09  Score=90.78  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeC
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG  320 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G  320 (340)
                      ....+.+.+++..+++|+++|||+|+++++++.+. ...+.+||.+.+..+. ..+.++.+..|++++||+++||+...|
T Consensus        38 ~~~~~~~~i~~~~Vvvf~~~~Cp~C~~~k~~L~~~-~i~~~~vdId~~~~~~-~~~~~L~~~~g~~tvP~ifi~G~~igG  115 (146)
T 2ht9_A           38 PVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDM-NVNYKVVELDLLEYGN-QFQDALYKMTGERTVPRIFVNGTFIGG  115 (146)
T ss_dssp             CHHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHH-TCCCEEEEGGGCTTHH-HHHHHHHHHHSCCCSCEEEETTEEEES
T ss_pred             HHHHHHHHhcCCCEEEEECCCChhHHHHHHHHHHc-CCCeEEEECccCcCCH-HHHHHHHHHhCCCCcCeEEECCEEEeC
Confidence            34556667777789999999999999999999875 3356678887552111 112457888999999999999998777


Q ss_pred             C---------CCHHHHHHHhCCC
Q 019491          321 E---------QDLSDLAKASGFP  334 (340)
Q Consensus       321 ~---------r~l~~La~~sg~~  334 (340)
                      -         ..|+++.+..|+.
T Consensus       116 ~d~l~~l~~~g~L~~~L~~~g~~  138 (146)
T 2ht9_A          116 ATDTHRLHKEGKLLPLVHQCYLK  138 (146)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTC-
T ss_pred             chHHHHHHHcChHHHHHHHcCcc
Confidence            3         3566666666653

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=3.4e-09  Score=88.49  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeC
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG  320 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G  320 (340)
                      ....+.+.+++..+++|+++|||+|+++++.+.+. ...+.+||.+.+..+. ..+.++.+..|++++||+++||+...|
T Consensus        16 ~~~~~~~~i~~~~vvvf~~~~Cp~C~~~~~~L~~~-~i~~~~vdid~~~~~~-~~~~~l~~~~g~~~vP~l~i~G~~igg   93 (130)
T 2cq9_A           16 PVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDM-NVNYKVVELDLLEYGN-QFQDALYKMTGERTVPRIFVNGTFIGG   93 (130)
T ss_dssp             HHHHHHHHHHHSSEEEEECSSCSHHHHHHHHHHHH-TCCCEEEETTTSTTHH-HHHHHHHHHHSSCCSSEEEETTEEEEE
T ss_pred             HHHHHHHHHcCCcEEEEEcCCChHHHHHHHHHHHc-CCCcEEEECcCCcCcH-HHHHHHHHHhCCCCcCEEEECCEEEcC
Confidence            34455666677779999999999999999999875 3345678887552111 112357788999999999999997766


Q ss_pred             C---------CCHHHHHHHhCC
Q 019491          321 E---------QDLSDLAKASGF  333 (340)
Q Consensus       321 ~---------r~l~~La~~sg~  333 (340)
                      -         ..|+++.+..|+
T Consensus        94 ~~~l~~~~~~~~L~~~L~~~g~  115 (130)
T 2cq9_A           94 ATDTHRLHKEGKLLPLVHQCYL  115 (130)
T ss_dssp             HHHHHHHHHHTSSHHHHHHHSS
T ss_pred             hHHHHHHHHcCcHHHHHHHcCc
Confidence            3         345666666665

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.90  E-value=2.4e-09  Score=89.45  Aligned_cols=74  Identities=11%  Similarity=0.005  Sum_probs=56.6

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh-----hc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA-----VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A-----~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      ++||+|+||++|+++++...+..     .+  .+-.||.+.+.      ..++..+++|++.||+++  ||+   |+.|.
T Consensus        22 LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~------~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~   95 (116)
T 3dml_A           22 LLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPL------PPGLELARPVTFTPTFVLMAGDVESGRLEGY   95 (116)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCC------CTTCBCSSCCCSSSEEEEEETTEEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCC------chhHHHHCCCCCCCEEEEEECCEEEeeecCC
Confidence            78999999999999977543321     11  24567887552      246788899999999887  897   79999


Q ss_pred             CCHHHHHHHhCC
Q 019491          322 QDLSDLAKASGF  333 (340)
Q Consensus       322 r~l~~La~~sg~  333 (340)
                      ++.+++.++...
T Consensus        96 ~~~~~f~~~L~~  107 (116)
T 3dml_A           96 PGEDFFWPMLAR  107 (116)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999887643

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=98.89  E-value=2.2e-09  Score=91.46  Aligned_cols=98  Identities=8%  Similarity=0.065  Sum_probs=62.3

Q ss_pred             ccCCCchhHHHHHHhhcccCeEEEccCCCHHHHHHH-HHH-----hHHhhccC--ceeECCCCCCCCCh-------h---
Q 019491          234 ITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQK-QMF-----GSEAVKQL--NYVECFPDGYRKGT-------K---  295 (340)
Q Consensus       234 itt~S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk-~lf-----gk~A~~~l--~yVeC~~~g~~~~~-------k---  295 (340)
                      .+..+=...+++|+.-.+.-++.|+|+|||+|++++ ++|     .+...+.+  -.||++.+..-...       .   
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~  110 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT  110 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhh
Confidence            344444566777777777778899999999999973 333     22212233  35677643200000       0   


Q ss_pred             -------hHh-hhhhCCCcccceeEE---CCE---EeeCCCC-HHHHHHHh
Q 019491          296 -------IAK-ACSDAKIEGFPTWVI---NGQ---VLSGEQD-LSDLAKAS  331 (340)
Q Consensus       296 -------~~~-lC~~~~I~GyPTw~i---nG~---~y~G~r~-l~~La~~s  331 (340)
                             ... ..++++|+++||..+   +|+   ++.|.++ .++|.++.
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l  161 (172)
T 3f9u_A          111 LRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFL  161 (172)
T ss_dssp             EEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHH
Confidence                   000 068899999999876   676   5789998 88887764

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.89  E-value=8.9e-09  Score=75.67  Aligned_cols=71  Identities=15%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      +++|+++|||+|++.++.+.+. ...+.+||.+.+..     ..+.-++++++++||+++||+.+.| .+.++|.++.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-~i~~~~~di~~~~~-----~~~~~~~~~~~~vP~l~~~g~~~~g-~~~~~l~~~l   73 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-GLAYNTVDISLDDE-----ARDYVMALGYVQAPVVEVDGEHWSG-FRPERIKQLQ   73 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-TCCCEEEETTTCHH-----HHHHHHHTTCBCCCEEEETTEEEES-CCHHHHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-CCCcEEEECCCCHH-----HHHHHHHcCCCccCEEEECCeEEcC-CCHHHHHHHH
Confidence            6799999999999999999874 33445677764421     1222357999999999999988766 4678888875

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.88  E-value=1.1e-09  Score=107.87  Aligned_cols=78  Identities=19%  Similarity=0.317  Sum_probs=59.8

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc-----c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E---
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~---  316 (340)
                      .+.-+++|+|+||+||+++.|.|.+.+.+     .  +..||++.+         +++++++|+||||+.+  +| +   
T Consensus       370 ~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~---------~~~~~~~v~~~Pt~~~~~~~~~~~~  440 (481)
T 3f8u_A          370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN---------DVPSPYEVRGFPTIYFSPANKKLNP  440 (481)
T ss_dssp             TCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS---------CCCTTCCCCSSSEEEEECTTCTTSC
T ss_pred             CCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch---------hhHhhCCCcccCEEEEEeCCCeEee
Confidence            34457799999999999999999875421     1  446777643         5678899999999887  33 2   


Q ss_pred             -EeeCCCCHHHHHHHhCCCCC
Q 019491          317 -VLSGEQDLSDLAKASGFPEM  336 (340)
Q Consensus       317 -~y~G~r~l~~La~~sg~~g~  336 (340)
                       +|.|.++.++|.++..-...
T Consensus       441 ~~~~G~~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          441 KKYEGGRELSDFISYLQREAT  461 (481)
T ss_dssp             EECCSCCSHHHHHHHHHHHCS
T ss_pred             eEeCCCCCHHHHHHHHHHhcC
Confidence             69999999999998765443

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.88  E-value=1.5e-09  Score=88.16  Aligned_cols=78  Identities=8%  Similarity=0.041  Sum_probs=58.9

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhcc---CceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL  318 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~---l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y  318 (340)
                      +..+.+.+++..+++|+++|||+|++.++.+.+.. ..   +.+||++.+.... ..+.++.+..|++++||.++||+..
T Consensus         9 ~~~~~~~i~~~~vv~f~~~~Cp~C~~~~~~L~~~~-~~~~~~~~vdi~~~~~~~-~~~~~l~~~~g~~~vP~v~i~g~~i   86 (114)
T 2hze_A            9 EEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFS-FKRGAYEIVDIKEFKPEN-ELRDYFEQITGGKTVPRIFFGKTSI   86 (114)
T ss_dssp             HHHHHTTCCTTCEEEEECTTCHHHHHHHHHHTTSC-BCTTSEEEEEGGGSSSHH-HHHHHHHHHHSCCSSCEEEETTEEE
T ss_pred             HHHHHHHhccCCEEEEEeCCChhHHHHHHHHHHcC-CCcCceEEEEccCCCChH-HHHHHHHHHhCCCCcCEEEECCEEE
Confidence            44566667777899999999999999999998743 33   6678887652111 1235778889999999999999977


Q ss_pred             eCC
Q 019491          319 SGE  321 (340)
Q Consensus       319 ~G~  321 (340)
                      .|-
T Consensus        87 gg~   89 (114)
T 2hze_A           87 GGY   89 (114)
T ss_dssp             ESH
T ss_pred             eCc
Confidence            664

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.83  E-value=1.1e-08  Score=86.61  Aligned_cols=92  Identities=18%  Similarity=0.259  Sum_probs=61.7

Q ss_pred             chhHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHH---hHH--h-hccCc--eeECCCCCCCC---ChhhHhhhhhCCCc
Q 019491          239 SPFALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMF---GSE--A-VKQLN--YVECFPDGYRK---GTKIAKACSDAKIE  306 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lf---gk~--A-~~~l~--yVeC~~~g~~~---~~k~~~lC~~~~I~  306 (340)
                      -...+++++.-.+.-+++|+ |+|||+|+++.+.+   .+-  . ...+.  .||++.+..-.   ..+..+++++++|+
T Consensus        36 ~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~  115 (154)
T 2ju5_A           36 YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVT  115 (154)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCC
Confidence            45666777766666677786 99999999999877   321  1 12344  45655331000   00135889999999


Q ss_pred             ccceeEE---CCE---EeeCCC--CHHHHHHHh
Q 019491          307 GFPTWVI---NGQ---VLSGEQ--DLSDLAKAS  331 (340)
Q Consensus       307 GyPTw~i---nG~---~y~G~r--~l~~La~~s  331 (340)
                      ++||.++   ||+   ++ |.+  +.++|.++.
T Consensus       116 ~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l  147 (154)
T 2ju5_A          116 GFPELVFIDAEGKQLARM-GFEPGGGAAYVSKV  147 (154)
T ss_dssp             SSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHH
T ss_pred             CCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHH
Confidence            9999887   676   46 988  888887664

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.83  E-value=6e-09  Score=83.10  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=56.6

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhh-hhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKAC-SDAKIEGFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC-~~~~I~GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      +..+++|+++|||+|++.++++.+. .....++|.+.+.........+.. +..|+.++|+.+++|.++-|..+.++|.+
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~-~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~~~l~~   99 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDL-GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKEKEIRE   99 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHH-TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCHHHHHH
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHc-CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCHHHHHH
Confidence            3448899999999999999999875 334556777653111100011112 23699999999998844556788899999


Q ss_pred             HhCC
Q 019491          330 ASGF  333 (340)
Q Consensus       330 ~sg~  333 (340)
                      +.++
T Consensus       100 ~L~~  103 (103)
T 3nzn_A          100 SLGF  103 (103)
T ss_dssp             HTTC
T ss_pred             HhCC
Confidence            8864

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.82  E-value=1.9e-09  Score=91.65  Aligned_cols=70  Identities=13%  Similarity=0.163  Sum_probs=51.1

Q ss_pred             eEEEccCC--CHHHHHHHHHHhHHhhc--cCc----eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          254 AKMYGAFW--CSHCLEQKQMFGSEAVK--QLN----YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       254 ~~~YgA~W--CpHC~~qk~lfgk~A~~--~l~----yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      +++|+|.|  ||+|++++|.|.+.+.+  ++.    .||++.        ..+++++++|+++||.++  ||+   ++.|
T Consensus        38 vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~--------~~~la~~~~V~~iPT~~~fk~G~~v~~~~G  109 (142)
T 2es7_A           38 VILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ--------SEAIGDRFNVRRFPATLVFTDGKLRGALSG  109 (142)
T ss_dssp             EEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH--------HHHHHHTTTCCSSSEEEEESCC----CEES
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCC--------CHHHHHhcCCCcCCeEEEEeCCEEEEEEeC
Confidence            66788877  99999999999885532  343    566653        358999999999999887  887   6899


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++.++|.++.
T Consensus       110 ~~~~~~l~~~i  120 (142)
T 2es7_A          110 IHPWAELLTLM  120 (142)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999888765

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.82  E-value=6.4e-09  Score=86.54  Aligned_cols=90  Identities=17%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc----cCc--eeECCCC----------------CCC----CChhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLN--YVECFPD----------------GYR----KGTKI  296 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~--yVeC~~~----------------g~~----~~~k~  296 (340)
                      +.++..-.+.-+++|+|+|||||+++.+.+.+.+.+    .+.  .|.++.+                +.+    .....
T Consensus        31 ~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  110 (164)
T 2h30_A           31 ASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNG  110 (164)
T ss_dssp             GGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTT
T ss_pred             eeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCc
Confidence            344444345557889999999999999888664321    111  2222100                000    00002


Q ss_pred             HhhhhhCCCcccceeEE---CCE---EeeCCCCHHHHHHHhC
Q 019491          297 AKACSDAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~sg  332 (340)
                      .+++++++|+++||.++   ||+   ++.|..+.++|.++..
T Consensus       111 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~  152 (164)
T 2h30_A          111 GTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIR  152 (164)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHH
T ss_pred             hHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHH
Confidence            47899999999999876   676   5789999999988764

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.82  E-value=4.2e-09  Score=86.59  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             CchhHHHHHHhhcccCeEEEccCCCHHHHHH-HHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQ-KQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       238 S~~~~~~la~~L~~~g~~~YgA~WCpHC~~q-k~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      |......+.+.+++..+++|+++|||+|++. |+++.+...  ..+.+||.+.+.... ..+.++.+..|++++|+.++|
T Consensus        11 ~~~~~~~~~~~i~~~~Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~-~~~~~l~~~~g~~tvP~vfi~   89 (118)
T 3c1r_A           11 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGA-DIQAALYEINGQRTVPNIYIN   89 (118)
T ss_dssp             CHHHHHHHHHHHHHSSEEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHH-HHHHHHHHHHSCCSSCEEEET
T ss_pred             CHHHHHHHHHHHccCcEEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChH-HHHHHHHHHhCCCCcCEEEEC
Confidence            4455666777777788999999999999999 999987431  234567776542101 113467788999999999999


Q ss_pred             CEEeeCCCCHHHH
Q 019491          315 GQVLSGEQDLSDL  327 (340)
Q Consensus       315 G~~y~G~r~l~~L  327 (340)
                      |+...|-.++.++
T Consensus        90 g~~igG~d~l~~l  102 (118)
T 3c1r_A           90 GKHIGGNDDLQEL  102 (118)
T ss_dssp             TEEEESHHHHHHH
T ss_pred             CEEEEcHHHHHHH
Confidence            9988776554443

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.81  E-value=1.1e-08  Score=83.24  Aligned_cols=76  Identities=13%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             cccCeEEEccC-------CCHHHHHHHHHHhHHhhc---cC--ceeECCC-----CCCCCChhhHhhhhhCCCcccceeE
Q 019491          250 HAIGAKMYGAF-------WCSHCLEQKQMFGSEAVK---QL--NYVECFP-----DGYRKGTKIAKACSDAKIEGFPTWV  312 (340)
Q Consensus       250 ~~~g~~~YgA~-------WCpHC~~qk~lfgk~A~~---~l--~yVeC~~-----~g~~~~~k~~~lC~~~~I~GyPTw~  312 (340)
                      .+.-+++|+|+       |||||+++++.|.+.+.+   .+  -+||++.     +.      ..+++++++|+++||.+
T Consensus        24 ~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~------~~~~~~~~~i~~~Pt~~   97 (123)
T 1wou_A           24 GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDP------NNDFRKNLKVTAVPTLL   97 (123)
T ss_dssp             TSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCT------TCHHHHHHCCCSSSEEE
T ss_pred             CCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhch------hHHHHHHCCCCeeCEEE
Confidence            44557789999       999999999999875422   23  3566631     11      24789999999999998


Q ss_pred             E--CCEEeeCC--CCHHHHHHHh
Q 019491          313 I--NGQVLSGE--QDLSDLAKAS  331 (340)
Q Consensus       313 i--nG~~y~G~--r~l~~La~~s  331 (340)
                      +  +++++.|.  .+.++|.++.
T Consensus        98 ~~~~~~~~~g~~~~~~~~l~~~i  120 (123)
T 1wou_A           98 KYGTPQKLVESECLQANLVEMLF  120 (123)
T ss_dssp             ETTSSCEEEGGGGGCHHHHHHHH
T ss_pred             EEcCCceEeccccCCHHHHHHHH
Confidence            8  66676665  3567777765

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.80  E-value=6.4e-09  Score=77.91  Aligned_cols=70  Identities=19%  Similarity=0.264  Sum_probs=52.7

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDL  327 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~L  327 (340)
                      .+++|+++|||+|++.++.+.+. ...+.+||.+.+.    ....++.+..++.++|++++||+.+.|-.++.++
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~-~i~~~~~~i~~~~----~~~~~~~~~~~~~~vP~l~~~g~~i~g~~~i~~~   71 (82)
T 1fov_A            2 NVEIYTKETCPYCHRAKALLSSK-GVSFQELPIDGNA----AKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYAL   71 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH-TCCCEEEECTTCS----HHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHH
T ss_pred             cEEEEECCCChhHHHHHHHHHHC-CCCcEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHH
Confidence            36899999999999999999874 3345677876542    1134567778999999999999988775544444

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.80  E-value=1.4e-08  Score=80.94  Aligned_cols=89  Identities=15%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCC-----------C----ChhhHhhhhhC
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYR-----------K----GTKIAKACSDA  303 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~-----------~----~~k~~~lC~~~  303 (340)
                      +.+++.-.+.-+++|+++|||||+++.+.+.+.+.  ..+.  .|+++.+...           +    -.+..++++++
T Consensus        18 ~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   97 (136)
T 1zzo_A           18 FHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANF   97 (136)
T ss_dssp             EEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHT
T ss_pred             eeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHc
Confidence            34444444555778899999999999998877432  1343  5666531000           0    00124789999


Q ss_pred             CCcccceeEE---CCEE--eeCCCCHHHHHHHh
Q 019491          304 KIEGFPTWVI---NGQV--LSGEQDLSDLAKAS  331 (340)
Q Consensus       304 ~I~GyPTw~i---nG~~--y~G~r~l~~La~~s  331 (340)
                      +|+++||+.+   ||+.  +.|..+.++|.++.
T Consensus        98 ~i~~~P~~~~id~~g~i~~~~g~~~~~~l~~~l  130 (136)
T 1zzo_A           98 GVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRV  130 (136)
T ss_dssp             TCCSSSEEEEECTTCCEEEEESCCCHHHHHHHH
T ss_pred             CCCCCceEEEECCCCCEEEEecCCCHHHHHHHH
Confidence            9999999887   7875  89999999988765

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.79  E-value=1.2e-08  Score=83.89  Aligned_cols=72  Identities=14%  Similarity=0.032  Sum_probs=56.2

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc-cCc--eeECCCCCCCCChhhHhhhhhCCCccccee--EECCEEe-eCCCCHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTW--VINGQVL-SGEQDLS  325 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw--~inG~~y-~G~r~l~  325 (340)
                      ..+++|+++|||.|+++++++.+.+.+ .+.  .||.+.|        .++.+++|++ .||.  ++||+.. .|..+.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d--------~~l~~~ygv~-VP~l~~~~dG~~v~~g~~~~~  100 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDGN--------EHLTRLYNDR-VPVLFAVNEDKELCHYFLDSD  100 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTTC--------HHHHHHSTTS-CSEEEETTTTEEEECSSCCCH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCCC--------HHHHHHhCCC-CceEEEEECCEEEEecCCCHH
Confidence            448899999999999999999874322 244  4555533        4778889998 9999  5599864 7999999


Q ss_pred             HHHHHhC
Q 019491          326 DLAKASG  332 (340)
Q Consensus       326 ~La~~sg  332 (340)
                      +|.++.+
T Consensus       101 ~L~~~L~  107 (107)
T 2fgx_A          101 VIGAYLS  107 (107)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998863

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.79  E-value=6.1e-09  Score=94.52  Aligned_cols=76  Identities=9%  Similarity=0.007  Sum_probs=59.1

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      .-++.|||+|||||+.+.+.|.+.|.+  .  +..||++ +        .+++++++|+++||+.+  ||+   ++.|.+
T Consensus       122 ~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~--------~~l~~~~~i~~~PTl~~~~~G~~v~~~~G~~  192 (217)
T 2trc_P          122 TIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-N--------TGAGDRFSSDVLPTLLVYKGGELISNFISVA  192 (217)
T ss_dssp             EEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-H--------HTCSTTSCGGGCSEEEEEETTEEEEEETTGG
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-c--------HHHHHHCCCCCCCEEEEEECCEEEEEEeCCc
Confidence            447789999999999999999886543  2  3467775 2        37899999999999876  886   588988


Q ss_pred             CH-------HHHHHHhCCCCC
Q 019491          323 DL-------SDLAKASGFPEM  336 (340)
Q Consensus       323 ~l-------~~La~~sg~~g~  336 (340)
                      +.       ++|.++..-.|.
T Consensus       193 ~~~g~~~~~~~Le~~L~~~g~  213 (217)
T 2trc_P          193 EQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             GGSCSSCCHHHHHHHHHTTTC
T ss_pred             ccCcccCCHHHHHHHHHHcCC
Confidence            75       888888765443

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.78  E-value=1.6e-08  Score=81.69  Aligned_cols=81  Identities=15%  Similarity=0.188  Sum_probs=57.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--c--cC--ceeECCCCCCCCC-----------------hhhHhhhhhCCCcc
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRKG-----------------TKIAKACSDAKIEG  307 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~l--~yVeC~~~g~~~~-----------------~k~~~lC~~~~I~G  307 (340)
                      +.-+++|+++|||||+++.+.+.+.+.  .  .+  -.|+++.+..+..                 .+..+++++++|++
T Consensus        35 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  114 (145)
T 3erw_A           35 QKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIIT  114 (145)
T ss_dssp             SEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCc
Confidence            344778889999999999998876432  1  23  3566654110000                 00237899999999


Q ss_pred             cceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          308 FPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       308 yPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      +||..+   +|+   ++.|..+.++|.++.
T Consensus       115 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          115 IPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             ESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             cCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            999776   675   689999999999875

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.78  E-value=9.5e-09  Score=104.75  Aligned_cols=75  Identities=21%  Similarity=0.355  Sum_probs=58.1

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--c------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-----
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-----  315 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-----  315 (340)
                      +.-+++|+|+||+||+++++.|.+.+.  +      .+..|||+.|.      ..++|++++|++|||.++  +|     
T Consensus        31 k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~------~~~l~~~~~V~~~PTl~~f~~g~~~G~  104 (519)
T 3t58_A           31 SAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET------NSAVCREFNIAGFPTVRFFQAFTKNGS  104 (519)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG------GHHHHHHTTCCSBSEEEEECTTCCSCC
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc------cHHHHHHcCCcccCEEEEEcCcccCCC
Confidence            344778999999999999999977542  1      25589997542      369999999999999887  32     


Q ss_pred             --EEeeCCCCHHHHHHHh
Q 019491          316 --QVLSGEQDLSDLAKAS  331 (340)
Q Consensus       316 --~~y~G~r~l~~La~~s  331 (340)
                        .++.|.++.++|.++.
T Consensus       105 ~~~~~~g~~~~~~L~~~l  122 (519)
T 3t58_A          105 GATLPGAGANVQTLRMRL  122 (519)
T ss_dssp             CEEECCSSCCHHHHHHHH
T ss_pred             ceeEecCCCCHHHHHHHH
Confidence              2578889999887765

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.77  E-value=8.5e-09  Score=107.86  Aligned_cols=73  Identities=12%  Similarity=0.151  Sum_probs=60.2

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-------EEee
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-------QVLS  319 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-------~~y~  319 (340)
                      +++|+||||+||+++.+.|.+.|.+     .+..|||+.+        ..+|++++|++|||..+  +|       .+|+
T Consensus       567 lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~  638 (780)
T 3apo_A          567 MVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQY--------HSFCTQENVQRYPEIRFYPQKSSKAYQYHSYN  638 (780)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTT--------HHHHHHTTCCSSSEEEEECCCSSSCCSCEECC
T ss_pred             EEEEECCCCHHHHHhhHHHHHHHHHhhCCeEEEEEECcch--------HHHHHHcCCCCCCeEEEEcCCCcCccchhhcC
Confidence            8899999999999999999886632     2568899854        47899999999999887  32       2589


Q ss_pred             C-CCCHHHHHHHhCCC
Q 019491          320 G-EQDLSDLAKASGFP  334 (340)
Q Consensus       320 G-~r~l~~La~~sg~~  334 (340)
                      | .|+.++|.+|..-.
T Consensus       639 g~~~~~~~l~~fi~~~  654 (780)
T 3apo_A          639 GWNRDAYSLRSWGLGF  654 (780)
T ss_dssp             CSCCSHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHhhh
Confidence            9 89999999997543

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.76  E-value=1.4e-08  Score=80.94  Aligned_cols=72  Identities=18%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCce--eECCCCCCCCChhhHhhhhhCCCcccceeEECCEE-eeCCCCHHHHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV-LSGEQDLSDLAK  329 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~y--VeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~-y~G~r~l~~La~  329 (340)
                      .+++|+++|||+|+++++.+.+.+ +.+.|  ||.+.+.      ..++.+++| ++.||.++||+. ..|..+.++|.+
T Consensus        18 ~v~~f~~~~C~~C~~~~~~L~~l~-~~i~~~~vdi~~~~------~~el~~~~g-~~vP~l~~~g~~~~~~g~~~~~l~~   89 (100)
T 1wjk_A           18 VLTLFTKAPCPLCDEAKEVLQPYK-DRFILQEVDITLPE------NSTWYERYK-FDIPVFHLNGQFLMMHRVNTSKLEK   89 (100)
T ss_dssp             EEEEEECSSCHHHHHHHHHTSTTS-SSSEEEEEETTSST------THHHHHHSS-SSCSEEEESSSEEEESSCCHHHHHH
T ss_pred             EEEEEeCCCCcchHHHHHHHHHhh-hCCeEEEEECCCcc------hHHHHHHHC-CCCCEEEECCEEEEecCCCHHHHHH
Confidence            478999999999999999998632 23554  5555211      257888999 999999999975 256688899988


Q ss_pred             HhC
Q 019491          330 ASG  332 (340)
Q Consensus       330 ~sg  332 (340)
                      +..
T Consensus        90 ~l~   92 (100)
T 1wjk_A           90 QLR   92 (100)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.76  E-value=1.6e-08  Score=86.84  Aligned_cols=91  Identities=13%  Similarity=0.118  Sum_probs=61.7

Q ss_pred             ccCCCchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh-----hccCceeECCCCCCCCChhhHhhhhhCCC--c
Q 019491          234 ITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA-----VKQLNYVECFPDGYRKGTKIAKACSDAKI--E  306 (340)
Q Consensus       234 itt~S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A-----~~~l~yVeC~~~g~~~~~k~~~lC~~~~I--~  306 (340)
                      +.-.+-...++.+..-.+.-+++|+|+|||+|+++++.|.+.+     ...+-.|+++.+.       ..+++++++  +
T Consensus        30 i~w~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~-------~~~~~~~~~~~~  102 (164)
T 1sen_A           30 IHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEE-------EPKDEDFSPDGG  102 (164)
T ss_dssp             SCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGG-------SCSCGGGCTTCS
T ss_pred             ccccCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCc-------hHHHHHhcccCC
Confidence            3334444566666655666688999999999999999987632     1235578887542       125677788  6


Q ss_pred             ccceeEE---CCE---EeeCC----------CCHHHHHHHh
Q 019491          307 GFPTWVI---NGQ---VLSGE----------QDLSDLAKAS  331 (340)
Q Consensus       307 GyPTw~i---nG~---~y~G~----------r~l~~La~~s  331 (340)
                      ++||.++   ||+   ++.|.          .+.++|.+..
T Consensus       103 ~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l  143 (164)
T 1sen_A          103 YIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGM  143 (164)
T ss_dssp             CSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHH
T ss_pred             cCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHH
Confidence            6999876   676   46774          6677776543

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.75  E-value=2.5e-08  Score=79.82  Aligned_cols=88  Identities=11%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCC---------------CChhhHhhhhhC
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYR---------------KGTKIAKACSDA  303 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~---------------~~~k~~~lC~~~  303 (340)
                      +.+++.-.+.-+++|+|+|||||+++.+.+.+.+.+  .+.  .|+++.+...               .+ +..++++++
T Consensus        17 ~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~   95 (136)
T 1lu4_A           17 FDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLND-ADGVIWARY   95 (136)
T ss_dssp             EEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEEC-TTSHHHHHT
T ss_pred             ecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEEC-CchhHHHhc
Confidence            344444445567788899999999999988764321  333  5666541000               00 024789999


Q ss_pred             CCcccceeEE---CCEE--ee---CCCCHHHHHHHh
Q 019491          304 KIEGFPTWVI---NGQV--LS---GEQDLSDLAKAS  331 (340)
Q Consensus       304 ~I~GyPTw~i---nG~~--y~---G~r~l~~La~~s  331 (340)
                      +|+++||..+   ||+.  +.   |..+.++|.++.
T Consensus        96 ~i~~~P~~~lid~~G~i~~~~~~~g~~~~~~l~~~l  131 (136)
T 1lu4_A           96 NVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRV  131 (136)
T ss_dssp             TCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcEEEEEcCCCccCHHHHHHHH
Confidence            9999999876   6774  88   999999998765

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=81.75  Aligned_cols=84  Identities=10%  Similarity=0.146  Sum_probs=62.2

Q ss_pred             hhHHHHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          240 PFALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      +....+.+.+++..+++|+.     +|||+|++.++++.+. ...+.+||.+.+.   . -+.++.+..|++++|+.++|
T Consensus         5 ~~~~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~-~i~~~~vdi~~~~---~-~~~~l~~~~g~~~vP~v~i~   79 (105)
T 2yan_A            5 KLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNST-GVEYETFDILEDE---E-VRQGLKAYSNWPTYPQLYVK   79 (105)
T ss_dssp             HHHHHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHH-TCCCEEEEGGGCH---H-HHHHHHHHHTCCSSCEEEET
T ss_pred             HHHHHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHC-CCCeEEEECCCCH---H-HHHHHHHHHCCCCCCeEEEC
Confidence            44556666777778999998     9999999999999875 3345567776542   1 13456677899999999999


Q ss_pred             CEEeeCCCCHHHHH
Q 019491          315 GQVLSGEQDLSDLA  328 (340)
Q Consensus       315 G~~y~G~r~l~~La  328 (340)
                      |+.+.|-.++.+|.
T Consensus        80 g~~igg~d~~~~l~   93 (105)
T 2yan_A           80 GELVGGLDIVKELK   93 (105)
T ss_dssp             TEEEECHHHHHHHH
T ss_pred             CEEEeChHHHHHHH
Confidence            99888766655553

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.75  E-value=2.1e-08  Score=82.90  Aligned_cols=75  Identities=19%  Similarity=0.121  Sum_probs=54.4

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC---
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ---  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r---  322 (340)
                      -++.|+|+||++|+.+.+.|.+.|.+  .+.++..+.|.         ..++++|++.||+.+  ||+   ++.|.+   
T Consensus        26 vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~---------~~~~~~v~~~PT~~~fk~G~~v~~~~G~~~~g   96 (118)
T 3evi_A           26 VIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNS---------CIQHYHDNCLPTIFVYKNGQIEAKFIGIIECG   96 (118)
T ss_dssp             EEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGG---------TSTTCCGGGCSEEEEEETTEEEEEEESTTTTT
T ss_pred             EEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHH---------hHHHCCCCCCCEEEEEECCEEEEEEeChhhhC
Confidence            46788999999999999999987643  24444433331         146789999999887  897   577765   


Q ss_pred             ----CHHHHHHHhCCCCC
Q 019491          323 ----DLSDLAKASGFPEM  336 (340)
Q Consensus       323 ----~l~~La~~sg~~g~  336 (340)
                          +.++|.++..-.|-
T Consensus        97 g~~~~~~~le~~L~~~g~  114 (118)
T 3evi_A           97 GINLKLEELEWKLAEVGA  114 (118)
T ss_dssp             CSSCCHHHHHHHHHTTTS
T ss_pred             CCCCCHHHHHHHHHHcCC
Confidence                67888887755443

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.75  E-value=9.8e-09  Score=91.59  Aligned_cols=72  Identities=11%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             eEEEcc-------CCCHHHHHHHHHHhHHhh--------cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C
Q 019491          254 AKMYGA-------FWCSHCLEQKQMFGSEAV--------KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N  314 (340)
Q Consensus       254 ~~~YgA-------~WCpHC~~qk~lfgk~A~--------~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n  314 (340)
                      +++|+|       +||++|+.++|.|.+.|.        .+  +..||++.+        +++++++||+++||+++  +
T Consensus        41 vV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~--------~~la~~~~I~siPtl~~F~~  112 (178)
T 3ga4_A           41 ILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV--------PQLVKDLKLQNVPHLVVYPP  112 (178)
T ss_dssp             EEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC--------HHHHHHTTCCSSCEEEEECC
T ss_pred             EEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC--------HHHHHHcCCCCCCEEEEEcC
Confidence            789999       599999999999988652        22  456777643        58999999999999887  4


Q ss_pred             CE---------------Ee---eC-CCCHHHHHHHhCC
Q 019491          315 GQ---------------VL---SG-EQDLSDLAKASGF  333 (340)
Q Consensus       315 G~---------------~y---~G-~r~l~~La~~sg~  333 (340)
                      |+               +|   +| .++.|+|++|.+-
T Consensus       113 g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~  150 (178)
T 3ga4_A          113 AESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAK  150 (178)
T ss_dssp             CCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHH
T ss_pred             CCCCCccccccccCCcceeecccCCCcCHHHHHHHHHH
Confidence            42               34   36 8999999999854

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.75  E-value=3.2e-08  Score=80.11  Aligned_cols=90  Identities=16%  Similarity=0.055  Sum_probs=61.8

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCC-------------------ChhhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRK-------------------GTKIA  297 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~-------------------~~k~~  297 (340)
                      .+.++..-.+.-+++|+++|||||+++.+.+.+.+.   .++.  .|+++.++...                   -....
T Consensus        21 ~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  100 (148)
T 2b5x_A           21 VTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDH  100 (148)
T ss_dssp             CCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSC
T ss_pred             ccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCch
Confidence            445555545666889999999999999998876431   1144  56665421100                   00124


Q ss_pred             hhhhhCCCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          298 KACSDAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      +++++++|+++||+.+   ||+   ++.|..+.++|.++.
T Consensus       101 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  140 (148)
T 2b5x_A          101 ALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRV  140 (148)
T ss_dssp             HHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHH
T ss_pred             hHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHH
Confidence            7899999999999887   776   578999988887764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.74  E-value=7.4e-09  Score=102.97  Aligned_cols=74  Identities=24%  Similarity=0.396  Sum_probs=55.4

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh--c----cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV--K----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---  316 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~----~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---  316 (340)
                      .+.-+++|+|+||+||++++|.|.+.+.  .    .+  ..|||+.+.         ..+ ++|+||||+.+  +|+   
T Consensus       376 ~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~---------~~~-~~v~~~Pt~~~~~~G~~~~  445 (504)
T 2b5e_A          376 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND---------VRG-VVIEGYPTIVLYPGGKKSE  445 (504)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC---------CSS-CCCSSSSEEEEECCTTSCC
T ss_pred             CCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccc---------ccc-CCceecCeEEEEeCCceec
Confidence            3445788999999999999999877542  2    23  467776441         123 89999999887  663   


Q ss_pred             --EeeCCCCHHHHHHHhCC
Q 019491          317 --VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       317 --~y~G~r~l~~La~~sg~  333 (340)
                        +|.|.++.++|.++..-
T Consensus       446 ~~~~~G~~~~~~l~~~i~~  464 (504)
T 2b5e_A          446 SVVYQGSRSLDSLFDFIKE  464 (504)
T ss_dssp             CCBCCSCCCHHHHHHHHHH
T ss_pred             ceEecCCCCHHHHHHHHHh
Confidence              68999999999988643

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.72  E-value=8.4e-09  Score=92.53  Aligned_cols=78  Identities=14%  Similarity=0.224  Sum_probs=54.5

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhcc--CceeEC------------------CCCC------------------CCCChh
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVEC------------------FPDG------------------YRKGTK  295 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~--l~yVeC------------------~~~g------------------~~~~~k  295 (340)
                      ++.|++||||||+++.+.+.+.+.+.  +-|++-                  ..|.                  ...-.+
T Consensus        90 vv~F~d~~Cp~C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~~~~v~~  169 (216)
T 1eej_A           90 ITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDIAD  169 (216)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSCCHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHHHHHHHH
Confidence            56899999999999998876643211  222221                  1100                  000012


Q ss_pred             hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHHh
Q 019491          296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~s  331 (340)
                      ..++.+++||+|.||.++ ||+++.|.++.++|.++.
T Consensus       170 ~~~l~~~~gV~gtPt~v~~dG~~~~G~~~~~~l~~~l  206 (216)
T 1eej_A          170 HYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFL  206 (216)
T ss_dssp             HHHHHHHHTCCSSSEEECTTSCEEESCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCccCEEEEcCCeEecCCCCHHHHHHHH
Confidence            457889999999999988 899999999999998765

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.71  E-value=1.3e-08  Score=77.23  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=55.1

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC-----cccceeEECCEEeeCCCCHHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI-----EGFPTWVINGQVLSGEQDLSD  326 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I-----~GyPTw~inG~~y~G~r~l~~  326 (340)
                      ..+++|+++|||+|++.++++.+. .....+++.+.+.  .+....++.+..|.     .++|++++||+...|-.++.+
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~-~i~~~~~~vd~~~--~~~~~~el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~i~~   80 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEEN-NIAFDETIIDDYA--QRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTELKA   80 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHT-TCCCEEEECCSHH--HHHHHHHHHHTTTCCSSCCCSSCEEEETTEEEESHHHHHH
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHc-CCCceEEEeecCC--ChhHHHHHHHHhCCCCCCCCccCEEEECCEEEeChHHHHH
Confidence            348899999999999999999774 3345667665432  11113467777888     999999999998887766666


Q ss_pred             HHH
Q 019491          327 LAK  329 (340)
Q Consensus       327 La~  329 (340)
                      +.+
T Consensus        81 ~~~   83 (89)
T 3msz_A           81 NAD   83 (89)
T ss_dssp             THH
T ss_pred             HHH
Confidence            554

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.71  E-value=2.4e-08  Score=81.32  Aligned_cols=86  Identities=13%  Similarity=0.105  Sum_probs=63.4

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeC
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG  320 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G  320 (340)
                      ....+.+.+++..+++|+.+|||+|++.|+++.+. .....++|.+.+.... ..+..+-+..|...+|+..|||+..-|
T Consensus         6 ~~~~~~~~i~~~~v~vy~~~~Cp~C~~ak~~L~~~-~i~~~~~dvd~~~~~~-~~~~~l~~~~g~~tvP~vfi~g~~igG   83 (114)
T 3h8q_A            6 LRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSL-GVECNVLELDQVDDGA-RVQEVLSEITNQKTVPNIFVNKVHVGG   83 (114)
T ss_dssp             HHHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHT-TCCCEEEETTTSTTHH-HHHHHHHHHHSCCSSCEEEETTEEEES
T ss_pred             HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHc-CCCcEEEEecCCCChH-HHHHHHHHHhCCCccCEEEECCEEEeC
Confidence            34566777788889999999999999999999874 3345678887532111 112345566799999999999998888


Q ss_pred             CCCHHHHH
Q 019491          321 EQDLSDLA  328 (340)
Q Consensus       321 ~r~l~~La  328 (340)
                      -.++.+|.
T Consensus        84 ~d~l~~l~   91 (114)
T 3h8q_A           84 CDQTFQAY   91 (114)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766654

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.70  E-value=2.1e-08  Score=86.11  Aligned_cols=72  Identities=11%  Similarity=0.019  Sum_probs=57.9

Q ss_pred             cCeEEEccCCC--HHHHHHHHHHhHHhhc---cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491          252 IGAKMYGAFWC--SHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS  319 (340)
Q Consensus       252 ~g~~~YgA~WC--pHC~~qk~lfgk~A~~---~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~  319 (340)
                      .-++.|+|+||  ++|+.+.|.+.+.+.+   ++.  +||.+.        .+++.+++||++.||+++  ||+   +..
T Consensus        35 ~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe--------~~~la~~ygV~siPTlilFkdG~~v~~~v  106 (137)
T 2qsi_A           35 IVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEA--------ERGLMARFGVAVCPSLAVVQPERTLGVIA  106 (137)
T ss_dssp             EEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGG--------HHHHHHHHTCCSSSEEEEEECCEEEEEEE
T ss_pred             cEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCC--------CHHHHHHcCCccCCEEEEEECCEEEEEEe
Confidence            45779999999  9999999999886532   333  455442        369999999999999887  998   689


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |.++-++|.++.
T Consensus       107 G~~~k~~l~~~l  118 (137)
T 2qsi_A          107 KIQDWSSYLAQI  118 (137)
T ss_dssp             SCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            999998887764

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.70  E-value=3.7e-09  Score=107.01  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=53.3

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc-------------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C-C
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-------------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N-G  315 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-------------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n-G  315 (340)
                      .-+++|+|+|||||++++|.|.+.+.+             .+..|||+.+        .++|++++|++|||.++  + |
T Consensus        44 ~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~--------~~la~~y~V~~~PTlilf~~gg  115 (470)
T 3qcp_A           44 PWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE--------VDLCRKYDINFVPRLFFFYPRD  115 (470)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC--------HHHHHHTTCCSSCEEEEEEESS
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC--------HHHHHHcCCCccCeEEEEECCC
Confidence            347889999999999999999875421             2346888754        58999999999999876  2 3


Q ss_pred             E----EeeCCCCHHHH
Q 019491          316 Q----VLSGEQDLSDL  327 (340)
Q Consensus       316 ~----~y~G~r~l~~L  327 (340)
                      .    +|.|.++.++|
T Consensus       116 ~~~~~~y~G~r~~e~L  131 (470)
T 3qcp_A          116 SCRSNEECGTSSLEHV  131 (470)
T ss_dssp             CCCTTSCCCCCCEEEE
T ss_pred             ceEEEEeeCCCCHHHH
Confidence            2    68999887765

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.69  E-value=3e-08  Score=76.40  Aligned_cols=77  Identities=18%  Similarity=0.151  Sum_probs=56.9

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCC-hhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-TKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~-~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .+++|+++|||+|++.++++.+. .....++|.+....... .-..++-+..++.++|+.++||+...|- +.++|.++.
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~-gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~-~~~~l~~~l   90 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKRE-GVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGY-NEEKLKELI   90 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHH-TCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESC-CHHHHHHHH
T ss_pred             eEEEEECCCChHHHHHHHHHHHc-CCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCC-CHHHHHHHh
Confidence            37899999999999999999875 33456777764211000 0024666778999999999999877765 889998875

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.66  E-value=3.6e-08  Score=86.90  Aligned_cols=72  Identities=6%  Similarity=0.024  Sum_probs=54.0

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc---cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEEe------
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQVL------  318 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~y------  318 (340)
                      .-++-|+|+|||.|+.+.|.|.+.|.+   ++.  .||.+.+        +++.++++|++.||+.+  ||+..      
T Consensus        43 ~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~--------~e~a~~y~V~siPT~~fFk~G~~v~vd~Gt  114 (160)
T 2av4_A           43 LVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEV--------PDFNTMYELYDPVSVMFFYRNKHMMIDLGT  114 (160)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTC--------CTTTTTTTCCSSEEEEEEETTEEEEEECSS
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCC--------HHHHHHcCCCCCCEEEEEECCEEEEEecCC
Confidence            346789999999999999999886533   233  5555432        48899999999999865  88753      


Q ss_pred             ------eCCCC-HHHHHHHh
Q 019491          319 ------SGEQD-LSDLAKAS  331 (340)
Q Consensus       319 ------~G~r~-l~~La~~s  331 (340)
                            .|..+ .++|.++.
T Consensus       115 gd~~k~vGa~~~k~~l~~~i  134 (160)
T 2av4_A          115 GNNNKINWPMNNKQEFIDIV  134 (160)
T ss_dssp             SCCSCBCSCCCCHHHHHHHH
T ss_pred             CCcCeEEeecCCHHHHHHHH
Confidence                  48776 77777664

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.66  E-value=2.9e-08  Score=84.70  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .++.++.||+|.||++|||+.+.|.++.++|.++.
T Consensus       134 ~~~a~~~gv~gtPt~~i~g~~~~G~~~~~~l~~~i  168 (175)
T 3gyk_A          134 MALAQKLGFNGTPSFVVEDALVPGFVEQSQLQDAV  168 (175)
T ss_dssp             HHHHHHHTCCSSSEEEETTEEECSCCCHHHHHHHH
T ss_pred             HHHHHHcCCccCCEEEECCEEeeCCCCHHHHHHHH
Confidence            45678899999999999999999999999998764

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.65  E-value=2e-08  Score=77.23  Aligned_cols=69  Identities=16%  Similarity=0.242  Sum_probs=51.3

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhC-CCcccceeEECCEEeeCCCCHHHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVLSGEQDLSDLA  328 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~-~I~GyPTw~inG~~y~G~r~l~~La  328 (340)
                      .+++|+++|||+|++.++.+.+. ...+.+||.+ +  .   ...++.+.. ++.++||+++||+...|-.++.++.
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~-~i~~~~vdv~-~--~---~~~~l~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~   76 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK-GVKYTDIDAS-T--S---LRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALE   76 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH-TCCEEEECSC-H--H---HHHHHHHHHHSSCCSCEEEETTEECCSHHHHHHHH
T ss_pred             eEEEEECCCChhHHHHHHHHHHc-CCCcEEEECC-H--H---HHHHHHHHhCCCCCcCEEEECCEEEeChHHHHHHH
Confidence            47899999999999999999874 2233455555 1  1   145777778 9999999999999877766555543

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.62  E-value=3.9e-08  Score=84.70  Aligned_cols=74  Identities=14%  Similarity=0.094  Sum_probs=58.6

Q ss_pred             cCeEEEccCC--CHHHHHHHHHHhHHhhc---c-CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491          252 IGAKMYGAFW--CSHCLEQKQMFGSEAVK---Q-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG  320 (340)
Q Consensus       252 ~g~~~YgA~W--CpHC~~qk~lfgk~A~~---~-l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G  320 (340)
                      .-+++|+|.|  ||.|+.+.|.+.+.|.+   + +.++-++.|.      ..++.+++||++.||+++  ||+   +..|
T Consensus        36 ~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe------~~~lA~~ygV~sIPTlilFk~G~~v~~~~G  109 (140)
T 2qgv_A           36 DGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ------SEAIGDRFGAFRFPATLVFTGGNYRGVLNG  109 (140)
T ss_dssp             SEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH------HHHHHHHHTCCSSSEEEEEETTEEEEEEES
T ss_pred             CEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC------CHHHHHHcCCccCCEEEEEECCEEEEEEec
Confidence            3467999999  99999999999886532   3 5555555442      369999999999999887  998   6899


Q ss_pred             CCCHHHHHHHh
Q 019491          321 EQDLSDLAKAS  331 (340)
Q Consensus       321 ~r~l~~La~~s  331 (340)
                      .++-++|.++.
T Consensus       110 ~~~k~~l~~~i  120 (140)
T 2qgv_A          110 IHPWAELINLM  120 (140)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99988887665

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.62  E-value=2.6e-08  Score=76.76  Aligned_cols=66  Identities=17%  Similarity=0.257  Sum_probs=49.6

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQD  323 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~  323 (340)
                      .+++|+++|||+|++.++.+.+. ...+.++|.+.+.    ....++.+..++.++|+.++||+...|-.+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~-~i~~~~~di~~~~----~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~   72 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK-GAEFNEIDASATP----ELRAEMQERSGRNTFPQIFIGSVHVGGCDD   72 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-TCCCEEEESTTSH----HHHHHHHHHHTSSCCCEEEETTEEEESHHH
T ss_pred             cEEEEECCCChhHHHHHHHHHHc-CCCcEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEEcCHHH
Confidence            47899999999999999999874 3345567776431    113456677899999999999987766543

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.62  E-value=4.9e-08  Score=84.28  Aligned_cols=77  Identities=9%  Similarity=0.051  Sum_probs=53.9

Q ss_pred             CchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh----h--ccCceeECCCCCCCCChhhHhhhhhCCCccccee
Q 019491          238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA----V--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW  311 (340)
Q Consensus       238 S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A----~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw  311 (340)
                      +-+.+++.|+.-.+.-++.|+|+|||+|+.+++.+.+..    .  ..+-.|+.+.+  +     .++..+.+|+|+||+
T Consensus        32 ~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e--~-----~~~~~~~~v~~~PT~  104 (151)
T 3ph9_A           32 TYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE--T-----TDKNLSPDGQYVPRI  104 (151)
T ss_dssp             SHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC--C-----SCGGGCTTCCCSSEE
T ss_pred             CHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC--c-----hhhHhhcCCCCCCEE
Confidence            345566667766777788999999999999999775421    1  13445666532  1     244677899999998


Q ss_pred             EE---CCE---EeeCC
Q 019491          312 VI---NGQ---VLSGE  321 (340)
Q Consensus       312 ~i---nG~---~y~G~  321 (340)
                      .+   +|+   +..|.
T Consensus       105 ~f~~~~G~~v~~~~G~  120 (151)
T 3ph9_A          105 MFVDPSLTVRADIAGR  120 (151)
T ss_dssp             EEECTTSCBCTTCCCS
T ss_pred             EEECCCCCEEEEEeCC
Confidence            87   676   45676

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.62  E-value=9.7e-08  Score=78.65  Aligned_cols=90  Identities=12%  Similarity=0.142  Sum_probs=59.0

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh----ccC--ceeECCCCCCCCC--------------hhhHhhhhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQL--NYVECFPDGYRKG--------------TKIAKACSD  302 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~----~~l--~yVeC~~~g~~~~--------------~k~~~lC~~  302 (340)
                      +.+++.-.+.-+++|+|+|||+|+++.+.+.+.+.    +.+  -.|+++.+...-.              ....+++++
T Consensus        19 ~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   98 (151)
T 2f9s_A           19 IELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDA   98 (151)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHH
T ss_pred             EEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHh
Confidence            34444444555778999999999999988766321    123  3566653210000              001378999


Q ss_pred             CCCcccceeEE---CCE---EeeCCCCHHHHHHHhC
Q 019491          303 AKIEGFPTWVI---NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       303 ~~I~GyPTw~i---nG~---~y~G~r~l~~La~~sg  332 (340)
                      ++|+++||..+   +|+   ++.|..+.++|.++..
T Consensus        99 ~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~  134 (151)
T 2f9s_A           99 YDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMN  134 (151)
T ss_dssp             TTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred             cCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence            99999999665   676   5789999998887653

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.62  E-value=2.7e-08  Score=82.34  Aligned_cols=90  Identities=14%  Similarity=0.145  Sum_probs=59.8

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc----c--CceeECCCCCCC----------------CChhhHhhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----Q--LNYVECFPDGYR----------------KGTKIAKAC  300 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~--l~yVeC~~~g~~----------------~~~k~~~lC  300 (340)
                      +.+++.-.+.-+++|+|+|||+|+++.+.+.+.+.+    .  +-.|+++.+...                .+....+++
T Consensus        17 ~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (151)
T 3raz_A           17 QSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFM   96 (151)
T ss_dssp             ECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHH
T ss_pred             ecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHH
Confidence            344443334457789999999999999988774321    2  235666421000                000135688


Q ss_pred             hhCC--CcccceeEE---CCE---EeeCCCCHHHHHHHhC
Q 019491          301 SDAK--IEGFPTWVI---NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       301 ~~~~--I~GyPTw~i---nG~---~y~G~r~l~~La~~sg  332 (340)
                      +++|  |+++||..+   +|+   ++.|..+.++|.++..
T Consensus        97 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  136 (151)
T 3raz_A           97 KTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVK  136 (151)
T ss_dssp             HTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHH
T ss_pred             HHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence            8899  999998766   675   6899999999987653

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.61  E-value=8.2e-08  Score=80.64  Aligned_cols=80  Identities=16%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhccCc--eeECCCCCCC---------------CChhhHhhhhhCCCcccce-eEE
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYR---------------KGTKIAKACSDAKIEGFPT-WVI  313 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~--yVeC~~~g~~---------------~~~k~~~lC~~~~I~GyPT-w~i  313 (340)
                      .-+++|+|+|||||+++.+.+.+.+.+.+.  .|+++.+...               -.....+++++++|+++|| ++|
T Consensus        53 ~vll~F~a~~C~~C~~~~~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~li  132 (168)
T 2b1k_A           53 PVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLI  132 (168)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSSEEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccCEEEEE
Confidence            346788899999999999988775433333  4554321000               0001247889999999995 556


Q ss_pred             --CCE---EeeCCCCHHHHHHHh
Q 019491          314 --NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       314 --nG~---~y~G~r~l~~La~~s  331 (340)
                        +|+   ++.|..+.++|.++.
T Consensus       133 d~~G~i~~~~~g~~~~~~l~~~l  155 (168)
T 2b1k_A          133 DGNGIIRYRHAGDLNPRVWEEEI  155 (168)
T ss_dssp             CTTSBEEEEEESCCCHHHHHHTT
T ss_pred             CCCCeEEEEEeCCCCHHHHHHHH
Confidence              675   588999988887653

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.60  E-value=1.2e-07  Score=74.93  Aligned_cols=87  Identities=16%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc---cCc--eeECCCCCCCCC--------------------hhhHhh
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKG--------------------TKIAKA  299 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~--yVeC~~~g~~~~--------------------~k~~~l  299 (340)
                      +++.-.+.-+++|+++|||+|+++.+.+.+.+.+   .+.  .|++........                    ....++
T Consensus        17 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   96 (138)
T 4evm_A           17 LSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKL   96 (138)
T ss_dssp             GGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHH
T ss_pred             HHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHH
Confidence            4443345557789999999999999988764322   222  444422100000                    002368


Q ss_pred             hhhCCCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          300 CSDAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       300 C~~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      +++++|+++||..+   +|+   ++.|..+.++|.++.
T Consensus        97 ~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  134 (138)
T 4evm_A           97 LETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTL  134 (138)
T ss_dssp             HHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             HHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHH
Confidence            89999999999876   675   689999999998764

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.59  E-value=5.7e-08  Score=77.76  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhC-CCcccceeEECCEEeeCCCCHHHHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVLSGEQDLSDLA  328 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~-~I~GyPTw~inG~~y~G~r~l~~La  328 (340)
                      ..+++|+++|||+|++.|+++.+. .....+||.+.+.  .  .+.++-+.. |..++|+.++||+..-|-.++.++.
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~-~i~y~~idI~~~~--~--~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~~   88 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRK-GVEFQEYCIDGDN--E--AREAMAARANGKRSLPQIFIDDQHIGGCDDIYALD   88 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHH-TCCCEEEECTTCH--H--HHHHHHHHTTTCCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHC-CCCCEEEEcCCCH--H--HHHHHHHHhCCCCCCCEEEECCEEEeChHHHHHHH
Confidence            348899999999999999999875 3345567776542  1  123344444 9999999999999887766555544

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.59  E-value=2.2e-08  Score=89.71  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhh--ccCceeE------------------CCCCC------------------CCCChh
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVE------------------CFPDG------------------YRKGTK  295 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~--~~l~yVe------------------C~~~g------------------~~~~~k  295 (340)
                      ++.|++||||||+++.+.+.+-+.  ..+.|++                  |..|.                  .+.-.+
T Consensus        90 vv~F~d~~Cp~C~~~~~~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~~~~v~~  169 (211)
T 1t3b_A           90 VTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNIVKK  169 (211)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSSHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHHHHHHHH
Confidence            568999999999999988766321  1222222                  21110                  000012


Q ss_pred             hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHHhC
Q 019491          296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKASG  332 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~sg  332 (340)
                      ..+++++.||+|.||.++ ||+++.|.++.++|.++..
T Consensus       170 ~~~l~~~~gV~gTPt~vi~nG~~~~G~~~~~~l~~~l~  207 (211)
T 1t3b_A          170 HYELGIQFGVRGTPSIVTSTGELIGGYLKPADLLRALE  207 (211)
T ss_dssp             HHHHHHHHTCCSSCEEECTTSCCCCSCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCcCCEEEEeCCEEecCCCCHHHHHHHHH
Confidence            457789999999999999 9999999999999998764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.56  E-value=6.3e-08  Score=90.01  Aligned_cols=76  Identities=9%  Similarity=-0.063  Sum_probs=55.1

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC-
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE-  321 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~-  321 (340)
                      .-++.|||+|||||+.+.+.|.+.|.+  .+  ..|+++.         .+++++++|+++||.++  ||+   ++.|. 
T Consensus       135 ~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~---------~~l~~~~~I~~~PTll~~~~G~~v~~~vG~~  205 (245)
T 1a0r_P          135 TIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN---------TGAGDRFSSDVLPTLLVYKGGELLSNFISVT  205 (245)
T ss_dssp             EEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH---------HCCTTSSCTTTCSEEEEEETTEEEEEETTGG
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc---------HHHHHHCCCCCCCEEEEEECCEEEEEEeCCc
Confidence            347789999999999999999886533  23  3556542         35788999999999877  886   35554 


Q ss_pred             ------CCHHHHHHHhCCCCC
Q 019491          322 ------QDLSDLAKASGFPEM  336 (340)
Q Consensus       322 ------r~l~~La~~sg~~g~  336 (340)
                            ++.++|.++..-.|.
T Consensus       206 ~~~g~~~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          206 EQLAEEFFTGDVESFLNEYGL  226 (245)
T ss_dssp             GGSCTTCCHHHHHHHHHTTTC
T ss_pred             ccccccccHHHHHHHHHHcCC
Confidence                  456778777655443

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.55  E-value=1.5e-07  Score=77.36  Aligned_cols=89  Identities=16%  Similarity=0.241  Sum_probs=59.1

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc-cCc--eeECCCCCC----------------CCChhhHhhhhh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGY----------------RKGTKIAKACSD  302 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~l~--yVeC~~~g~----------------~~~~k~~~lC~~  302 (340)
                      .+.++..-.+.-+++|+|+|||||+++.+.+.+.+.+ ++.  .|+++.+..                ..+ +..+++++
T Consensus        34 ~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~  112 (156)
T 1kng_A           34 GLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVD-ANGRASIE  112 (156)
T ss_dssp             CBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEE-TTSHHHHH
T ss_pred             eechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeC-chhHHHHh
Confidence            3445554456668899999999999999988775322 243  344432100                000 12478899


Q ss_pred             CCCcccce-eEE--CCE---EeeCCCCHHHHHHHh
Q 019491          303 AKIEGFPT-WVI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       303 ~~I~GyPT-w~i--nG~---~y~G~r~l~~La~~s  331 (340)
                      ++|+++|| +++  ||+   ++.|..+.++|.++.
T Consensus       113 ~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l  147 (156)
T 1kng_A          113 WGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVL  147 (156)
T ss_dssp             TTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTH
T ss_pred             cCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHH
Confidence            99999996 555  676   589999998887653

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.55  E-value=8e-08  Score=80.52  Aligned_cols=88  Identities=15%  Similarity=0.151  Sum_probs=62.8

Q ss_pred             chhHHHHHHhhcccCeEEEccCCCHHHHHH-HHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECC
Q 019491          239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQ-KQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING  315 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~q-k~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG  315 (340)
                      ......+.+-+++..+++|+.+|||+|++. |+++.+...  ....+||.+.+..+. ..+.++.+..|++.+|+.+|||
T Consensus        24 ~~~~~~v~~~i~~~~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~-~~~~~L~~~~g~~tVP~vfi~g  102 (129)
T 3ctg_A           24 QETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGS-EIQDALEEISGQKTVPNVYING  102 (129)
T ss_dssp             HHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHH-HHHHHHHHHHSCCSSCEEEETT
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHH-HHHHHHHHHhCCCCCCEEEECC
Confidence            345556666667778999999999999999 999987431  234567776553111 1135677778999999999999


Q ss_pred             EEeeCCCCHHHH
Q 019491          316 QVLSGEQDLSDL  327 (340)
Q Consensus       316 ~~y~G~r~l~~L  327 (340)
                      +..-|-.++.+|
T Consensus       103 ~~igG~d~l~~l  114 (129)
T 3ctg_A          103 KHIGGNSDLETL  114 (129)
T ss_dssp             EEEESHHHHHHH
T ss_pred             EEEcCHHHHHHH
Confidence            988776555443

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.54  E-value=1.7e-07  Score=77.70  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=55.5

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c--cCc--eeECCCCCCCCChhhHhhhhhC-------------
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QLN--YVECFPDGYRKGTKIAKACSDA-------------  303 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~l~--yVeC~~~g~~~~~k~~~lC~~~-------------  303 (340)
                      +.+++.-.+.-+++|+|+|||+|+++.+.+.+.+.  .  .+.  .|+++.+        .+.++++             
T Consensus        27 ~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~--------~~~~~~~~~~~~~~~~~~~~   98 (165)
T 3or5_A           27 FSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQ--------LPNVKNYMKTQGIIYPVMMA   98 (165)
T ss_dssp             EEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCC--------HHHHHHHHHHHTCCSCEEEC
T ss_pred             echhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCC--------HHHHHHHHHHcCCCCceEec
Confidence            44555444555778889999999999998866431  1  133  5666543        1233333             


Q ss_pred             --------------CCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          304 --------------KIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       304 --------------~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                                    +|+++||.++   ||+   ++.|..+.++|.++.
T Consensus        99 ~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  146 (165)
T 3or5_A           99 TPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIV  146 (165)
T ss_dssp             CHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHH
T ss_pred             CHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHH
Confidence                          8999999766   675   588999998887764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.53  E-value=1.9e-07  Score=94.06  Aligned_cols=87  Identities=15%  Similarity=0.276  Sum_probs=64.7

Q ss_pred             hhHHHHHHhh-cccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          240 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       240 ~~~~~la~~L-~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      +..++..+.+ ....+++|+|+|||+|+.+++.+.+-+..  ++.  .||.+.        .+++.++++|++.||.++|
T Consensus       106 ~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~--------~~~~~~~~~i~svPt~~i~  177 (521)
T 1hyu_A          106 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGT--------FQNEITERNVMGVPAVFVN  177 (521)
T ss_dssp             HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTT--------CHHHHHHTTCCSSSEEEET
T ss_pred             HHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechh--------hHHHHHHhCCCccCEEEEC
Confidence            3344444444 34558899999999999999999875532  233  344432        3689999999999999999


Q ss_pred             CE-EeeCCCCHHHHHHHhCCC
Q 019491          315 GQ-VLSGEQDLSDLAKASGFP  334 (340)
Q Consensus       315 G~-~y~G~r~l~~La~~sg~~  334 (340)
                      |+ ...|.++.++|.++..-.
T Consensus       178 g~~~~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          178 GKEFGQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             TEEEEESCCCHHHHHHHHCCS
T ss_pred             CEEEecCCCCHHHHHHHHhhc
Confidence            97 467999999999987543

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.53  E-value=2e-07  Score=76.50  Aligned_cols=89  Identities=18%  Similarity=0.138  Sum_probs=58.5

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCCC---------------CChhhHhhhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGYR---------------KGTKIAKACS  301 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~~---------------~~~k~~~lC~  301 (340)
                      +.+++.-.+.-+++|+++|||+|+++.+.+.+.+  ..  .+.  .|+.+.+...               .-....++++
T Consensus        21 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  100 (153)
T 2l5o_A           21 VSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQ  100 (153)
T ss_dssp             EEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHH
T ss_pred             ccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHH
Confidence            4455554556678899999999999988876532  11  133  3333211100               0000247899


Q ss_pred             hCCCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          302 DAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       302 ~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      +++|+++||+.+   +|+   +|.|..+.++|.++.
T Consensus       101 ~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  136 (153)
T 2l5o_A          101 AFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEI  136 (153)
T ss_dssp             HHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHH
T ss_pred             HcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHH
Confidence            999999999876   676   599999998888754

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.51  E-value=3.2e-07  Score=83.89  Aligned_cols=82  Identities=16%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             hHHHHHHhhccc---CeEEEccCC--CHHHHHHHHHHhHHhhc--c------Cc--eeECCCCCCCCChhhHhhhhhCCC
Q 019491          241 FALSLAKHLHAI---GAKMYGAFW--CSHCLEQKQMFGSEAVK--Q------LN--YVECFPDGYRKGTKIAKACSDAKI  305 (340)
Q Consensus       241 ~~~~la~~L~~~---g~~~YgA~W--CpHC~~qk~lfgk~A~~--~------l~--yVeC~~~g~~~~~k~~~lC~~~~I  305 (340)
                      ...+|.+.|.+.   -.+.|+|+|  |+||+++++++.+-|..  +      +.  +||++.+        .++|+++||
T Consensus        13 ~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~--------~~~~~~~gv   84 (243)
T 2hls_A           13 FRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESD--------SDKFSEFKV   84 (243)
T ss_dssp             HHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTT--------HHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcC--------HHHHHhcCC
Confidence            444566666553   356778999  99999999998875421  2      43  6777643        489999999


Q ss_pred             cccceeEE-C-CEEeeCCCCHHHHHHH
Q 019491          306 EGFPTWVI-N-GQVLSGEQDLSDLAKA  330 (340)
Q Consensus       306 ~GyPTw~i-n-G~~y~G~r~l~~La~~  330 (340)
                      +++||+.+ + +.+|.|.++.+++.++
T Consensus        85 ~~~Pt~~i~~g~~~~~G~~~~~~l~~f  111 (243)
T 2hls_A           85 ERVPTVAFLGGEVRWTGIPAGEEIRAL  111 (243)
T ss_dssp             CSSSEEEETTTTEEEESCCCTTHHHHH
T ss_pred             CcCCEEEEECCceeEcCCCcHHHHHHH
Confidence            99999998 4 4789999888877765

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.51  E-value=1.4e-07  Score=87.30  Aligned_cols=74  Identities=11%  Similarity=0.174  Sum_probs=56.3

Q ss_pred             cCeEEEcc--CCCHHHHHHHHHHhHHhhc-------cCceeECCCCCCCCChhhHhhhhhCCCc--ccceeEE--CCE--
Q 019491          252 IGAKMYGA--FWCSHCLEQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ--  316 (340)
Q Consensus       252 ~g~~~YgA--~WCpHC~~qk~lfgk~A~~-------~l~yVeC~~~g~~~~~k~~~lC~~~~I~--GyPTw~i--nG~--  316 (340)
                      .-+++|+|  ||||    +.|.|.+.|..       .+..|||+..|-..   ..++|++++|+  +|||+++  +|+  
T Consensus        24 ~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~---~~~l~~~~~V~~~~~PTl~~f~~G~~~   96 (240)
T 2qc7_A           24 FVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKL---NMELSEKYKLDKESYPVFYLFRDGDFE   96 (240)
T ss_dssp             EEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCC---SHHHHHHTTCCGGGCSEEEEEETTCSS
T ss_pred             CEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchh---hHHHHHHcCCCCCCCCEEEEEeCCCcC
Confidence            34678999  9999    88888875421       25678876421011   25899999999  9999887  665  


Q ss_pred             ---EeeCCCCHHHHHHHhC
Q 019491          317 ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       317 ---~y~G~r~l~~La~~sg  332 (340)
                         +|.|.++.++|.+|..
T Consensus        97 ~~~~y~G~~~~~~L~~fi~  115 (240)
T 2qc7_A           97 NPVPYTGAVKVGAIQRWLK  115 (240)
T ss_dssp             CCEECCSCSCHHHHHHHHH
T ss_pred             cceeecCCCCHHHHHHHHH
Confidence               7999999999999875

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.50  E-value=1.4e-07  Score=87.91  Aligned_cols=74  Identities=14%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             cCeEEEc--cCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCc--ccceeEE-CCE--
Q 019491          252 IGAKMYG--AFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI-NGQ--  316 (340)
Q Consensus       252 ~g~~~Yg--A~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~--GyPTw~i-nG~--  316 (340)
                      .-+++|+  ||||+    ++|.|.+.|.+        .+..|||+..+.+.   ..++|++++|+  +|||+++ .|+  
T Consensus        35 ~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~---n~~la~~~~V~~~~~PTl~~F~G~~~  107 (248)
T 2c0g_A           35 YSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELE---NKALGDRYKVDDKNFPSIFLFKGNAD  107 (248)
T ss_dssp             EEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCT---THHHHHHTTCCTTSCCEEEEESSSSS
T ss_pred             CEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccc---cHHHHHHhCCCcCCCCeEEEEeCCcC
Confidence            3477899  99999    99998875421        35689998622111   25899999999  9999876 343  


Q ss_pred             ---Ee--eCCCCHHHHHHHhC
Q 019491          317 ---VL--SGEQDLSDLAKASG  332 (340)
Q Consensus       317 ---~y--~G~r~l~~La~~sg  332 (340)
                         +|  .|.|+.++|.+|..
T Consensus       108 ~~~~y~~~G~~~~~~L~~fi~  128 (248)
T 2c0g_A          108 EYVQLPSHVDVTLDNLKAFVS  128 (248)
T ss_dssp             SEEECCTTSCCCHHHHHHHHH
T ss_pred             cceeecccCCCCHHHHHHHHH
Confidence               68  99999999998864

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.48  E-value=3.6e-07  Score=75.24  Aligned_cols=83  Identities=17%  Similarity=0.260  Sum_probs=58.6

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc-cCc--eeECCCCCCCC-------------------ChhhHhhhhhCCCccc
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYRK-------------------GTKIAKACSDAKIEGF  308 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~l~--yVeC~~~g~~~-------------------~~k~~~lC~~~~I~Gy  308 (340)
                      +.-+++|+|+|||+|+++.+.+.+.+.+ .+.  .|+++++....                   .....+++++++|+++
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~  110 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQ  110 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcc
Confidence            5557788899999999999988764322 333  56773221000                   0014688999999999


Q ss_pred             ceeEE---CCE---EeeCCCCHHHHHHHhCC
Q 019491          309 PTWVI---NGQ---VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       309 PTw~i---nG~---~y~G~r~l~~La~~sg~  333 (340)
                      ||..+   +|+   ++.|..+.++|.++..-
T Consensus       111 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  141 (154)
T 3ia1_A          111 PWTFVVDREGKVVALFAGRAGREALLDALLL  141 (154)
T ss_dssp             CEEEEECTTSEEEEEEESBCCHHHHHHHHHH
T ss_pred             cEEEEECCCCCEEEEEcCCCCHHHHHHHHHh
Confidence            99655   776   68999999999887644

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.45  E-value=2.2e-07  Score=74.14  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=52.0

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhh-CCCcccceeEE-CCEEeeCCCCHH----
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI-NGQVLSGEQDLS----  325 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~-~~I~GyPTw~i-nG~~y~G~r~l~----  325 (340)
                      ..+++|+.+|||+|++.|.++.+. .....++|.+.|..   . ...+-+. .|.+..|+.+| ||+...|. +.+    
T Consensus         4 a~I~vYs~~~Cp~C~~aK~~L~~~-gi~y~~idi~~d~~---~-~~~~~~~~~G~~tVP~I~i~Dg~~l~~~-~~~el~~   77 (92)
T 2lqo_A            4 AALTIYTTSWCGYCLRLKTALTAN-RIAYDEVDIEHNRA---A-AEFVGSVNGGNRTVPTVKFADGSTLTNP-SADEVKA   77 (92)
T ss_dssp             SCEEEEECTTCSSHHHHHHHHHHT-TCCCEEEETTTCHH---H-HHHHHHHSSSSSCSCEEEETTSCEEESC-CHHHHHH
T ss_pred             CcEEEEcCCCCHhHHHHHHHHHhc-CCceEEEEcCCCHH---H-HHHHHHHcCCCCEeCEEEEeCCEEEeCC-CHHHHHH
Confidence            458899999999999999999874 32334555554421   1 2233332 38999999999 67766654 433    


Q ss_pred             HHHHHhCCCC
Q 019491          326 DLAKASGFPE  335 (340)
Q Consensus       326 ~La~~sg~~g  335 (340)
                      .|+++.|++-
T Consensus        78 ~L~el~gL~~   87 (92)
T 2lqo_A           78 KLVKIAGLEH   87 (92)
T ss_dssp             HHHHHHCCSC
T ss_pred             HHHHhcCCcc
Confidence            4577777763

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.43  E-value=1.8e-07  Score=75.80  Aligned_cols=82  Identities=13%  Similarity=0.102  Sum_probs=52.2

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc---c--Cc--eeECCCCCCC-----------------CChhhHhhhhhCCC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LN--YVECFPDGYR-----------------KGTKIAKACSDAKI  305 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~--yVeC~~~g~~-----------------~~~k~~~lC~~~~I  305 (340)
                      .+.-+++|+|+|||||+++.+.+.+.+.+   .  +.  .|+++.+...                 ......+++++++|
T Consensus        33 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  112 (148)
T 3fkf_A           33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAI  112 (148)
T ss_dssp             TSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTC
T ss_pred             CcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCC
Confidence            34557788899999999999988764321   1  33  5666543100                 00002478999999


Q ss_pred             cccceeEE---CCEEeeCCCCHHHHHHHh
Q 019491          306 EGFPTWVI---NGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       306 ~GyPTw~i---nG~~y~G~r~l~~La~~s  331 (340)
                      +++||+.+   ||+......+.++|.+..
T Consensus       113 ~~~P~~~lid~~G~i~~~~~~~~~l~~~l  141 (148)
T 3fkf_A          113 LTLPTNILLSPTGKILARDIQGEALTGKL  141 (148)
T ss_dssp             CSSSEEEEECTTSBEEEESCCHHHHHHHH
T ss_pred             CCcCEEEEECCCCeEEEecCCHHHHHHHH
Confidence            99999776   777433333777776553

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.41  E-value=7.1e-07  Score=73.75  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=58.9

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHH-HHHHhHHhh----ccCc--eeECCCC-------------------------
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQ-KQMFGSEAV----KQLN--YVECFPD-------------------------  288 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~q-k~lfgk~A~----~~l~--yVeC~~~-------------------------  288 (340)
                      ..+.+++.-.+.-++.|+|+|||+|+++ .+.+.+.+.    +.+.  .|+++.+                         
T Consensus        21 ~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (160)
T 3lor_A           21 EGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAV  100 (160)
T ss_dssp             CCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEE
T ss_pred             CccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEE
Confidence            3455666556666888999999999995 887766421    1133  4554311                         


Q ss_pred             -CCCCChhhHhhhhhCCCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          289 -GYRKGTKIAKACSDAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       289 -g~~~~~k~~~lC~~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                       ..........+.+++||+++||..+   +|+   ++.|..+.++|.+..
T Consensus       101 d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i  150 (160)
T 3lor_A          101 DMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLL  150 (160)
T ss_dssp             ECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHH
T ss_pred             CCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHH
Confidence             0000000112889999999999776   676   678999998887764

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.41  E-value=1.5e-07  Score=77.30  Aligned_cols=89  Identities=15%  Similarity=0.123  Sum_probs=58.3

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c--cC--ceeECCCCCCCC---------------ChhhHhhhhh
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRK---------------GTKIAKACSD  302 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~l--~yVeC~~~g~~~---------------~~k~~~lC~~  302 (340)
                      .+++.-.+.-+++|+++|||+|+++.+.+.+.+.  .  .+  -.|+++.+...-               ..+..++.++
T Consensus        24 ~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  103 (152)
T 2lja_A           24 SLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDA  103 (152)
T ss_dssp             ESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHH
T ss_pred             eHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHH
Confidence            3444334555788999999999999988766421  1  23  356666431000               0001378899


Q ss_pred             CCCcccceeEE---CCE---EeeCCCCHHHHHHHhC
Q 019491          303 AKIEGFPTWVI---NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       303 ~~I~GyPTw~i---nG~---~y~G~r~l~~La~~sg  332 (340)
                      ++|+++||+.+   +|+   ++.|..+.++|.++..
T Consensus       104 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  139 (152)
T 2lja_A          104 YLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFN  139 (152)
T ss_dssp             TTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHH
T ss_pred             cCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHH
Confidence            99999999887   676   4678888888877653

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.40  E-value=6.9e-07  Score=73.85  Aligned_cols=89  Identities=12%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHH-HHHHhHHhh----ccCc--eeECCCCCC------------------------C
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQ-KQMFGSEAV----KQLN--YVECFPDGY------------------------R  291 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~q-k~lfgk~A~----~~l~--yVeC~~~g~------------------------~  291 (340)
                      +.+++.-.+.-++.|+|.|||+|+++ .+.+.+.+.    +.+.  .|+++++..                        .
T Consensus        21 ~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  100 (158)
T 3eyt_A           21 LTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQ  100 (158)
T ss_dssp             CCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEEC
T ss_pred             cCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcC
Confidence            34444445556778999999999996 887766431    1233  455542100                        0


Q ss_pred             CC-hhhHhhhhhCCCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          292 KG-TKIAKACSDAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       292 ~~-~k~~~lC~~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      ++ ....++.++++|+++||..+   +|+   ++.|..+.++|.+..
T Consensus       101 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i  147 (158)
T 3eyt_A          101 PGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEI  147 (158)
T ss_dssp             CCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHH
T ss_pred             ccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHH
Confidence            00 00115789999999998766   676   688999988877654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.35  E-value=1.1e-06  Score=72.11  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=56.6

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc----cCceeECCCCCCCCC--------------hhhHhhhh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK----QLNYVECFPDGYRKG--------------TKIAKACS  301 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~----~l~yVeC~~~g~~~~--------------~k~~~lC~  301 (340)
                      .+.+++.-.+.-+++|+++|||+|+++.+.+.+.+  .+    .+-.|+++.+...-.              ....++++
T Consensus        20 ~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   99 (152)
T 3gl3_A           20 VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPR   99 (152)
T ss_dssp             EEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHH
T ss_pred             eEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHH
Confidence            44555554555577889999999999998876642  11    233566664310000              00126789


Q ss_pred             hCCCcccceeEE---CCE---EeeCCC--CHHHHHHHh
Q 019491          302 DAKIEGFPTWVI---NGQ---VLSGEQ--DLSDLAKAS  331 (340)
Q Consensus       302 ~~~I~GyPTw~i---nG~---~y~G~r--~l~~La~~s  331 (340)
                      +++|+++||..+   +|+   ++.|..  +.++|.++.
T Consensus       100 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i  137 (152)
T 3gl3_A          100 LYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQI  137 (152)
T ss_dssp             HTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHH
T ss_pred             HcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHH
Confidence            999999999665   675   577854  446666553

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.34  E-value=5.5e-07  Score=79.60  Aligned_cols=72  Identities=17%  Similarity=0.091  Sum_probs=50.8

Q ss_pred             CchhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhh-----ccCc--eeECCCCCCCCChhhHhhhhhC------
Q 019491          238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-----KQLN--YVECFPDGYRKGTKIAKACSDA------  303 (340)
Q Consensus       238 S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~-----~~l~--yVeC~~~g~~~~~k~~~lC~~~------  303 (340)
                      -++.+++.|+.-.+.-++.|+|+||++|+.+++ .|..+..     +.+-  .||.+.+        .++.+.+      
T Consensus        27 ~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~--------~~l~~~y~~~~q~   98 (173)
T 3ira_A           27 WGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREER--------PDIDNIYMTVCQI   98 (173)
T ss_dssp             SSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTC--------HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCccc--------CcHHHHHHHHHHH
Confidence            346778888877777888999999999999988 5653321     1232  4555432        3566666      


Q ss_pred             --CCcccceeEE---CCEE
Q 019491          304 --KIEGFPTWVI---NGQV  317 (340)
Q Consensus       304 --~I~GyPTw~i---nG~~  317 (340)
                        ||.|+||.++   +|+.
T Consensus        99 ~~gv~g~Pt~v~l~~dG~~  117 (173)
T 3ira_A           99 ILGRGGWPLNIIMTPGKKP  117 (173)
T ss_dssp             HHSCCCSSEEEEECTTSCE
T ss_pred             HcCCCCCcceeeECCCCCc
Confidence              9999999876   6764

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.34  E-value=2.4e-07  Score=75.13  Aligned_cols=88  Identities=13%  Similarity=0.024  Sum_probs=55.6

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h-c---cCceeECCCCCCCC-----------------ChhhHhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V-K---QLNYVECFPDGYRK-----------------GTKIAKA  299 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~-~---~l~yVeC~~~g~~~-----------------~~k~~~l  299 (340)
                      +.+++.-.+.-+++|+|+|||+|+++.+.+.+..  . .   .+-.|+++.+...-                 .....++
T Consensus        24 ~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  103 (148)
T 3hcz_A           24 RYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDF  103 (148)
T ss_dssp             CCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCH
T ss_pred             EEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhH
Confidence            4444443445577899999999999998876632  1 1   13356666432100                 0000118


Q ss_pred             hhhCCCcccceeEE---CCE---EeeCCCCHHHHHHH
Q 019491          300 CSDAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKA  330 (340)
Q Consensus       300 C~~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~  330 (340)
                      +++++|+++||+.+   +|+   ++.|..+++++.+.
T Consensus       104 ~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~  140 (148)
T 3hcz_A          104 KITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQ  140 (148)
T ss_dssp             HHHHCCCSSCEEEEECTTCBEEEESCCGGGHHHHHHH
T ss_pred             HHhcCcCCCCEEEEECCCCcEEEecCCHHHHHHHHHH
Confidence            89999999999886   676   57777777776543

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.31  E-value=2.8e-07  Score=74.24  Aligned_cols=78  Identities=10%  Similarity=0.154  Sum_probs=56.0

Q ss_pred             HHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEee
Q 019491          245 LAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS  319 (340)
Q Consensus       245 la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~  319 (340)
                      +.+.+++..+++|..     +|||+|++.|+++.+. .....+||.+.+.   . -+.++-+..|..++|+.++||+.+-
T Consensus         8 ~~~~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~-~i~~~~vdi~~~~---~-~~~~l~~~~g~~~vP~ifi~g~~ig   82 (109)
T 1wik_A            8 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNST-GVEYETFDILEDE---E-VRQGLKTFSNWPTYPQLYVRGDLVG   82 (109)
T ss_dssp             HHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHT-CSCEEEEESSSCH---H-HHHHHHHHHSCCSSCEEECSSSEEE
T ss_pred             HHHHhccCCEEEEEecCCCCCCCchHHHHHHHHHHc-CCCeEEEECCCCH---H-HHHHHHHHhCCCCCCEEEECCEEEc
Confidence            445566777999999     9999999999999874 2234467776441   1 1345566679999999999999877


Q ss_pred             CCCCHHHH
Q 019491          320 GEQDLSDL  327 (340)
Q Consensus       320 G~r~l~~L  327 (340)
                      |-.++.+|
T Consensus        83 G~d~l~~l   90 (109)
T 1wik_A           83 GLDIVKEL   90 (109)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            75544443

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.31  E-value=1.3e-06  Score=70.91  Aligned_cols=90  Identities=13%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhH---Hh--h--ccCc--eeECCCCCCCCC--------------hhhHhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS---EA--V--KQLN--YVECFPDGYRKG--------------TKIAKA  299 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk---~A--~--~~l~--yVeC~~~g~~~~--------------~k~~~l  299 (340)
                      +.+++.-.+.-+++|+|+|||+|+++.+.+.+   ..  .  +.+.  .|+.+.+...-.              .....+
T Consensus        20 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~   99 (142)
T 3ewl_A           20 SRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDI   99 (142)
T ss_dssp             EEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHH
T ss_pred             EEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccch
Confidence            34444434555778999999999998766544   11  1  1233  455543210000              000011


Q ss_pred             --hhhCCCcccceeEE---CCEEeeCCCCHHHHHHHhC
Q 019491          300 --CSDAKIEGFPTWVI---NGQVLSGEQDLSDLAKASG  332 (340)
Q Consensus       300 --C~~~~I~GyPTw~i---nG~~y~G~r~l~~La~~sg  332 (340)
                        .++++|+++||..+   +|+...+..+.++|.++..
T Consensus       100 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~l~~~l~  137 (142)
T 3ewl_A          100 RTRQLYDIRATPTIYLLDGRKRVILKDTSMEQLIDYLA  137 (142)
T ss_dssp             HHTTCSCCCSSSEEEEECTTCBEEECSCCHHHHHHHHH
T ss_pred             hhHHHcCCCCCCeEEEECCCCCEEecCCCHHHHHHHHH
Confidence              34799999999776   7887778889999988753

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.31  E-value=8.3e-07  Score=73.39  Aligned_cols=95  Identities=16%  Similarity=0.112  Sum_probs=55.6

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc----cCceeECCCCCCCC---------------Ch--hhHhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK----QLNYVECFPDGYRK---------------GT--KIAKA  299 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~----~l~yVeC~~~g~~~---------------~~--k~~~l  299 (340)
                      +.+++.-.+.-+++|+|.|||+|+++.+.+.+.+  ..    .+-.|+++.+...-               +.  ...++
T Consensus        22 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  101 (152)
T 2lrn_A           22 VSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDV  101 (152)
T ss_dssp             EESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHH
T ss_pred             EeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHH
Confidence            3344443445577889999999999988876632  11    23356666421000               00  02578


Q ss_pred             hhhCCCcccceeEE---CCEE---eeCCCCH-HHHHHHhCCCCCC
Q 019491          300 CSDAKIEGFPTWVI---NGQV---LSGEQDL-SDLAKASGFPEMS  337 (340)
Q Consensus       300 C~~~~I~GyPTw~i---nG~~---y~G~r~l-~~La~~sg~~g~~  337 (340)
                      +++++|+++||..+   ||+.   +.+..++ +.|.++.+-..+.
T Consensus       102 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~l~~~l~~l~~~~~~~  146 (152)
T 2lrn_A          102 LESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAKEG  146 (152)
T ss_dssp             HHHTTCCSSCEEEEECTTSEEEEECCCTTHHHHHHHHHHTSSSSC
T ss_pred             HHHhCCCcCCeEEEECCCCeEEEeeCCHHHHHHHHHHHHhhcccc
Confidence            99999999999775   7873   2233333 3344555544433

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=98.30  E-value=8.4e-07  Score=74.64  Aligned_cols=84  Identities=14%  Similarity=0.146  Sum_probs=58.7

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeC
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG  320 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G  320 (340)
                      .++.+-++...+++|..+|||+|++.|+++.+..  .....+||.+.+.... .-+..+-+..|.+.+|+.+|||+.+-|
T Consensus         5 ~~~~~ii~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~-~~~~~l~~~~G~~tVP~IfI~G~~IGG   83 (127)
T 3l4n_A            5 KEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGE-ELQEYIKLVTGRGTVPNLLVNGVSRGG   83 (127)
T ss_dssp             HHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHH-HHHHHHHHHHSCCSSCEEEETTEECCC
T ss_pred             HHHHHHHccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHH-HHHHHHHHHcCCCCcceEEECCEEEcC
Confidence            3577777888899999999999999999998741  2235567887542111 112233344689999999999987766


Q ss_pred             CCCHHHH
Q 019491          321 EQDLSDL  327 (340)
Q Consensus       321 ~r~l~~L  327 (340)
                      -.++.+|
T Consensus        84 ~ddl~~l   90 (127)
T 3l4n_A           84 NEEIKKL   90 (127)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544443

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.28  E-value=1.7e-06  Score=73.82  Aligned_cols=87  Identities=11%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h--ccC------c--eeECCCCCCCCChhhHhhhhhC------
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQL------N--YVECFPDGYRKGTKIAKACSDA------  303 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~--~~l------~--yVeC~~~g~~~~~k~~~lC~~~------  303 (340)
                      .+.|++.-.+.-+++|+|+|||||+++.+.+.+.+  .  +.+      .  .|+++.+.  . ...++..+++      
T Consensus        51 ~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~--~-~~~~~~~~~~~~~~~~  127 (183)
T 3lwa_A           51 QINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYS--R-DIAQDFVTDNGLDYPS  127 (183)
T ss_dssp             EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCC--H-HHHHHHHHHTTCCSCE
T ss_pred             EecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCC--H-HHHHHHHHHcCCCccE
Confidence            44555554455577899999999999988876632  1  113      3  46665421  1 1122333322      


Q ss_pred             ---------------CCcccceeE-E--CCE---EeeCCCCHHHHHHHh
Q 019491          304 ---------------KIEGFPTWV-I--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       304 ---------------~I~GyPTw~-i--nG~---~y~G~r~l~~La~~s  331 (340)
                                     +|+++||.+ |  +|+   ++.|..+.++|.++.
T Consensus       128 ~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  176 (183)
T 3lwa_A          128 IYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVA  176 (183)
T ss_dssp             EECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHH
T ss_pred             EECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHH
Confidence                           589999755 4  676   588999999998764

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=98.27  E-value=1.1e-06  Score=71.24  Aligned_cols=85  Identities=13%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             hhHHHHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491          240 PFALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN  314 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in  314 (340)
                      +....+.+.+++..+++|.-     ||||+|++.|.+|.+. .....++|.+.+.    ..+..+-+..|.+.+|..+||
T Consensus         6 ~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~-gi~~~~~dI~~~~----~~~~~l~~~~g~~tvP~ifi~   80 (109)
T 3ipz_A            6 QLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNL-NVPFEDVNILENE----MLRQGLKEYSNWPTFPQLYIG   80 (109)
T ss_dssp             HHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCEEEEGGGCH----HHHHHHHHHHTCSSSCEEEET
T ss_pred             HHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHc-CCCcEEEECCCCH----HHHHHHHHHHCCCCCCeEEEC
Confidence            44556677888888999987     5999999999999874 3345567776442    113455555689999999999


Q ss_pred             CEEeeCCCCHHHHHH
Q 019491          315 GQVLSGEQDLSDLAK  329 (340)
Q Consensus       315 G~~y~G~r~l~~La~  329 (340)
                      |+.+-|-.++.+|.+
T Consensus        81 g~~iGG~d~l~~l~~   95 (109)
T 3ipz_A           81 GEFFGGCDITLEAFK   95 (109)
T ss_dssp             TEEEECHHHHHHHHH
T ss_pred             CEEEeCHHHHHHHHH
Confidence            998888766666543

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.26  E-value=2.3e-06  Score=70.25  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=55.2

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c--c--CceeECCCCCCCCC---------------hhhHhhhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--Q--LNYVECFPDGYRKG---------------TKIAKACS  301 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~--l~yVeC~~~g~~~~---------------~k~~~lC~  301 (340)
                      +.+++.-.+.-+++|+++|||+|+++.+.+.+.+.  .  .  +-.|+++++....-               ....++++
T Consensus        21 ~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  100 (154)
T 3kcm_A           21 VKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGK  100 (154)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHH
T ss_pred             EehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHH
Confidence            34444434455778889999999999988866431  1  2  33566654310000               00135888


Q ss_pred             hCCCcccceeE-E--CCE---EeeCCC--CHHHHHHHh
Q 019491          302 DAKIEGFPTWV-I--NGQ---VLSGEQ--DLSDLAKAS  331 (340)
Q Consensus       302 ~~~I~GyPTw~-i--nG~---~y~G~r--~l~~La~~s  331 (340)
                      +++|+++||.. |  +|+   ++.|..  +.++|.++.
T Consensus       101 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l  138 (154)
T 3kcm_A          101 LYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFL  138 (154)
T ss_dssp             HHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHH
T ss_pred             HhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHH
Confidence            99999999644 5  676   577876  555666554

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.26  E-value=1e-06  Score=73.62  Aligned_cols=87  Identities=13%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCC---------------CCCCCh-----------
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPD---------------GYRKGT-----------  294 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~---------------g~~~~~-----------  294 (340)
                      +++.-.+.-+++|+++|||||+++.+.+.+.+.+  .+  -.|+++..               ..+...           
T Consensus        32 l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (165)
T 3ha9_A           32 LNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDP  111 (165)
T ss_dssp             GGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCT
T ss_pred             HHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCC
Confidence            3333334457788899999999999988774322  33  35666620               000000           


Q ss_pred             h------hHhhhhhCCCcccceeEE---CCE-EeeCCC-CHHHHHHHh
Q 019491          295 K------IAKACSDAKIEGFPTWVI---NGQ-VLSGEQ-DLSDLAKAS  331 (340)
Q Consensus       295 k------~~~lC~~~~I~GyPTw~i---nG~-~y~G~r-~l~~La~~s  331 (340)
                      .      ..+++++++|+++||.++   +|+ ++.|.. +.++|.++.
T Consensus       112 ~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~l~~~l  159 (165)
T 3ha9_A          112 SWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLYAGTTPSLGELESVI  159 (165)
T ss_dssp             TSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEEEEESCCHHHHHHHH
T ss_pred             CeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEEeCCCCCHHHHHHHH
Confidence            0      027889999999999887   676 457888 888888764

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.23  E-value=2.5e-06  Score=73.26  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=58.0

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCc--eeECCCCCCC---------------CChhhHhhhhhCC
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYR---------------KGTKIAKACSDAK  304 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~--yVeC~~~g~~---------------~~~k~~~lC~~~~  304 (340)
                      .+.++..-.+.-+++|+|.|||+|+++.+.+.+.+.+.+.  .|+++.+...               -..+..+++++++
T Consensus        50 ~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  129 (176)
T 3kh7_A           50 RLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLG  129 (176)
T ss_dssp             EEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHT
T ss_pred             eecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcC
Confidence            4455555555667788899999999999988775433333  3443211000               0001247788999


Q ss_pred             CcccceeE-E--CCE---EeeCCCCHHHHHHH
Q 019491          305 IEGFPTWV-I--NGQ---VLSGEQDLSDLAKA  330 (340)
Q Consensus       305 I~GyPTw~-i--nG~---~y~G~r~l~~La~~  330 (340)
                      |.++||.+ |  +|+   ++.|..+.++|.+.
T Consensus       130 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~  161 (176)
T 3kh7_A          130 VYGAPETYLIDKQGIIRHKIVGVVDQKVWREQ  161 (176)
T ss_dssp             CCSSCEEEEECTTCBEEEEEESCCCHHHHHHH
T ss_pred             CCCCCeEEEECCCCeEEEEEcCCCCHHHHHHH
Confidence            99999655 4  676   68899998887754

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.23  E-value=1.7e-06  Score=81.88  Aligned_cols=73  Identities=7%  Similarity=-0.012  Sum_probs=58.0

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcc--cceeEE--CC---EEee--
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI--NG---QVLS--  319 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~G--yPTw~i--nG---~~y~--  319 (340)
                      +++|+++||+||+++++.|.+.|.+   +  +.+|||+...      ..++|+++||++  +||..+  +|   ++|.  
T Consensus       139 ~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~------~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~  212 (361)
T 3uem_A          139 ILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTD------NQRILEFFGLKKEECPAVRLITLEEEMTKYKPE  212 (361)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGG------GHHHHHHTTCCTTTCSEEEEEECC--CCEECCS
T ss_pred             EEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHH------HHHHHHHcCCCccCCccEEEEEcCCcccccCCC
Confidence            6789999999999999999886632   2  4578887321      358999999998  999887  32   3787  


Q ss_pred             -CCCCHHHHHHHhC
Q 019491          320 -GEQDLSDLAKASG  332 (340)
Q Consensus       320 -G~r~l~~La~~sg  332 (340)
                       |.++.++|.+|..
T Consensus       213 ~~~~~~~~l~~fi~  226 (361)
T 3uem_A          213 SEELTAERITEFCH  226 (361)
T ss_dssp             SCCCCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHH
Confidence             8999999999863

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.22  E-value=2.2e-06  Score=70.04  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=52.1

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhH---Hh--h--ccCc--eeECCCCCCC----------------CChhhHh
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS---EA--V--KQLN--YVECFPDGYR----------------KGTKIAK  298 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk---~A--~--~~l~--yVeC~~~g~~----------------~~~k~~~  298 (340)
                      .|++.-.+.-+.+|+|+|||||+++.+.+.+   ..  .  +.+.  .|+.+.+...                ......+
T Consensus        25 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~  104 (142)
T 3eur_A           25 TLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIK  104 (142)
T ss_dssp             ETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHH
T ss_pred             eHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhh
Confidence            3444334455778999999999999887766   21  2  2233  3444332000                0000112


Q ss_pred             hhhhCCCcccceeEE---CCEEeeCCCCHHHHHHHh
Q 019491          299 ACSDAKIEGFPTWVI---NGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       299 lC~~~~I~GyPTw~i---nG~~y~G~r~l~~La~~s  331 (340)
                      +.+.++|+++||..+   +|+......+.++|.++.
T Consensus       105 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~l~~~l  140 (142)
T 3eur_A          105 NKNLYDLRAIPTLYLLDKNKTVLLKDATLQKVEQYL  140 (142)
T ss_dssp             HTTCSCCTTCSEEEEECTTCBEEEEEECHHHHHHHH
T ss_pred             hhhhcCCCcCCeEEEECCCCcEEecCCCHHHHHHHH
Confidence            578899999999776   677433334677777664

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.21  E-value=1.8e-06  Score=71.94  Aligned_cols=95  Identities=16%  Similarity=0.114  Sum_probs=55.9

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c--cC--ceeECCCCCCCCC-----------hhhHhhhhhCCC
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRKG-----------TKIAKACSDAKI  305 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~l--~yVeC~~~g~~~~-----------~k~~~lC~~~~I  305 (340)
                      +.+++.-.+.-+++|+++|||+|+++.+.+.+.+.  .  .+  -.|+++++-..--           ....+++++++|
T Consensus        34 ~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  113 (158)
T 3hdc_A           34 KSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGA  113 (158)
T ss_dssp             EESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTC
T ss_pred             EehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCC
Confidence            44555444555778889999999999888866431  1  22  2566664100000           002478999999


Q ss_pred             cccceeEE---CCE---EeeCCCC---HHHHHHHhCCCCCC
Q 019491          306 EGFPTWVI---NGQ---VLSGEQD---LSDLAKASGFPEMS  337 (340)
Q Consensus       306 ~GyPTw~i---nG~---~y~G~r~---l~~La~~sg~~g~~  337 (340)
                      +++||..+   +|+   ++.|..+   .+-+.++--.++++
T Consensus       114 ~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~~  154 (158)
T 3hdc_A          114 NRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGHH  154 (158)
T ss_dssp             CSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC---
T ss_pred             CCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhcccc
Confidence            99999555   675   5788754   33334444444443

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=98.18  E-value=1.9e-06  Score=70.31  Aligned_cols=83  Identities=16%  Similarity=0.266  Sum_probs=61.4

Q ss_pred             hHHHHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECC
Q 019491          241 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING  315 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG  315 (340)
                      ....+.+.+++..+++|.-     +|||+|++.|.++.+. .....++|.+.|.  .  -+..+-+..|-+.+|..+|||
T Consensus         5 ~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-gi~y~~~di~~d~--~--~~~~l~~~~g~~tvP~ifi~g   79 (111)
T 3zyw_A            5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKH-NIQFSSFDIFSDE--E--VRQGLKAYSSWPTYPQLYVSG   79 (111)
T ss_dssp             HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCEEEEGGGCH--H--HHHHHHHHHTCCSSCEEEETT
T ss_pred             HHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHc-CCCeEEEECcCCH--H--HHHHHHHHHCCCCCCEEEECC
Confidence            4556788888999999998     9999999999999874 3345567776542  1  123444445889999999999


Q ss_pred             EEeeCCCCHHHHH
Q 019491          316 QVLSGEQDLSDLA  328 (340)
Q Consensus       316 ~~y~G~r~l~~La  328 (340)
                      +.+-|-.++.+|.
T Consensus        80 ~~iGG~d~l~~l~   92 (111)
T 3zyw_A           80 ELIGGLDIIKELE   92 (111)
T ss_dssp             EEEECHHHHHHHH
T ss_pred             EEEecHHHHHHHH
Confidence            9888776666554

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.16  E-value=3.2e-06  Score=70.60  Aligned_cols=87  Identities=10%  Similarity=0.023  Sum_probs=56.6

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh----c--cCceeECCCCCCC---------------CChhhHhhhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----K--QLNYVECFPDGYR---------------KGTKIAKACS  301 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~----~--~l~yVeC~~~g~~---------------~~~k~~~lC~  301 (340)
                      +.+++.-.+.-++.|+|.|||+|+++.+.+.+.+.    +  .+-.|+++++...               .+....++.+
T Consensus        28 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  107 (152)
T 2lrt_A           28 RSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYIS  107 (152)
T ss_dssp             ECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHH
T ss_pred             EeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHH
Confidence            34444434555778899999999999887765321    1  1335666543200               0000013788


Q ss_pred             hCCCcccceeEE---CCE---EeeCCCCHHHHHH
Q 019491          302 DAKIEGFPTWVI---NGQ---VLSGEQDLSDLAK  329 (340)
Q Consensus       302 ~~~I~GyPTw~i---nG~---~y~G~r~l~~La~  329 (340)
                      +++|+++||..+   +|+   ++.|..++++..+
T Consensus       108 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~e~~~~  141 (152)
T 2lrt_A          108 LYNVTNLPSVFLVNRNNELSARGENIKDLDEAIK  141 (152)
T ss_dssp             HHTCCSCSEEEEEETTTEEEEETTTCSCHHHHHH
T ss_pred             HcCcccCceEEEECCCCeEEEecCCHHHHHHHHH
Confidence            999999999776   787   5789999988764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.12  E-value=1e-06  Score=71.75  Aligned_cols=72  Identities=13%  Similarity=0.211  Sum_probs=47.9

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc---c--CceeECCCCCC--------CC--------ChhhHh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGY--------RK--------GTKIAK  298 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~---~--l~yVeC~~~g~--------~~--------~~k~~~  298 (340)
                      .+.+++.-.+.-+++|+|.|||+|+++.+.+.+.+  .+   .  +-.|+++.+..        .+        .....+
T Consensus        20 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (144)
T 1o73_A           20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSE   99 (144)
T ss_dssp             CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHH
T ss_pred             cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHH
Confidence            45556555566678899999999999999886642  11   2  33666664310        00        001357


Q ss_pred             hhhhCCCcccceeEE
Q 019491          299 ACSDAKIEGFPTWVI  313 (340)
Q Consensus       299 lC~~~~I~GyPTw~i  313 (340)
                      ++++++|+++||..+
T Consensus       100 ~~~~~~v~~~Pt~~l  114 (144)
T 1o73_A          100 LGKTFGVESIPTLIT  114 (144)
T ss_dssp             HHHHHTCCSSSEEEE
T ss_pred             HHHHcCCCCCCEEEE
Confidence            899999999999776

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.10  E-value=3.4e-06  Score=73.61  Aligned_cols=66  Identities=9%  Similarity=0.111  Sum_probs=43.7

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCCChhhHhhhhhCC---CcccceeEE--C-CEE--e
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAK---IEGFPTWVI--N-GQV--L  318 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~~~k~~~lC~~~~---I~GyPTw~i--n-G~~--y  318 (340)
                      +.-++.|+|+|||+|+...|.+.+.+.  ..+.  .|+.+.        ..++.++++   |+++||.++  + |+.  .
T Consensus        55 k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~--------~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~  126 (167)
T 1z6n_A           55 RYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGR--------AEDDLRQRLALERIAIPLVLVLDEEFNLLGR  126 (167)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHH--------HHHHTTTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCC--------CHHHHHHHHHcCCCCcCeEEEECCCCCEEEE
Confidence            345778999999999999999987542  2233  444432        235566665   999999877  3 452  2


Q ss_pred             eCCCCH
Q 019491          319 SGEQDL  324 (340)
Q Consensus       319 ~G~r~l  324 (340)
                      -|.+.-
T Consensus       127 ~g~~p~  132 (167)
T 1z6n_A          127 FVERPQ  132 (167)
T ss_dssp             EESSCH
T ss_pred             EcCCCH
Confidence            366553

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=98.10  E-value=1.5e-06  Score=66.80  Aligned_cols=72  Identities=19%  Similarity=0.440  Sum_probs=50.9

Q ss_pred             eEEEccC----CCHHHHHHHHHHhHHhhccCceeECCCCC--CCCChhhHhhhhhCCCc-----ccceeEE-CCEEeeCC
Q 019491          254 AKMYGAF----WCSHCLEQKQMFGSEAVKQLNYVECFPDG--YRKGTKIAKACSDAKIE-----GFPTWVI-NGQVLSGE  321 (340)
Q Consensus       254 ~~~YgA~----WCpHC~~qk~lfgk~A~~~l~yVeC~~~g--~~~~~k~~~lC~~~~I~-----GyPTw~i-nG~~y~G~  321 (340)
                      +++|+.+    |||+|++.|.++.+. .....++|.+...  .++ ..+.++-+..|.+     .+|+.+| ||+.+-|-
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~-gi~y~~idI~~~~~~~~~-~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~   79 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK-KQPFEFINIMPEKGVFDD-EKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF   79 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT-TCCEEEEESCSBTTBCCH-HHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc-CCCEEEEEeeccccccCH-HHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCH
Confidence            6789999    999999999999874 3344567776211  111 1134566677888     9999999 99988776


Q ss_pred             CCHHHH
Q 019491          322 QDLSDL  327 (340)
Q Consensus       322 r~l~~L  327 (340)
                      .++.+|
T Consensus        80 d~l~~~   85 (87)
T 1aba_A           80 DQLREY   85 (87)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555444

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=98.09  E-value=3.9e-06  Score=69.58  Aligned_cols=85  Identities=9%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             hhHHHHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491          240 PFALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV  312 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~  312 (340)
                      +....+.+.+++..+++|.-     ||||+|++.|++|.+....  .+.++|.+.+.    .-+..+-+..|-+.+|..+
T Consensus         4 ~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~----~~~~~l~~~sg~~tvP~vf   79 (121)
T 3gx8_A            4 EIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP----ELREGIKEFSEWPTIPQLY   79 (121)
T ss_dssp             HHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCH----HHHHHHHHHHTCCSSCEEE
T ss_pred             HHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCH----HHHHHHHHHhCCCCCCeEE
Confidence            34455677777888999977     5999999999999875221  14456765432    1134555557899999999


Q ss_pred             ECCEEeeCCCCHHHHH
Q 019491          313 INGQVLSGEQDLSDLA  328 (340)
Q Consensus       313 inG~~y~G~r~l~~La  328 (340)
                      |||+.+-|-.++.+|.
T Consensus        80 I~g~~iGG~d~l~~l~   95 (121)
T 3gx8_A           80 VNKEFIGGCDVITSMA   95 (121)
T ss_dssp             ETTEEEESHHHHHHHH
T ss_pred             ECCEEEecHHHHHHHH
Confidence            9999887766555443

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.37  E-value=4.2e-07  Score=73.61  Aligned_cols=83  Identities=17%  Similarity=0.366  Sum_probs=50.0

Q ss_pred             HHHHHHhhc-c-cCeEEEccCCCHHHHHHHHHHhHHh--h----cc--CceeECCCCCCCC-----------------Ch
Q 019491          242 ALSLAKHLH-A-IGAKMYGAFWCSHCLEQKQMFGSEA--V----KQ--LNYVECFPDGYRK-----------------GT  294 (340)
Q Consensus       242 ~~~la~~L~-~-~g~~~YgA~WCpHC~~qk~lfgk~A--~----~~--l~yVeC~~~g~~~-----------------~~  294 (340)
                      .+.+++.++ + .-+++|+|+|||+|+++.+.+.+.+  .    ..  +-.|+++.+...-                 ..
T Consensus        16 ~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~   95 (143)
T 2lus_A           16 EVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSG   95 (143)
Confidence            455555233 3 4577899999999999988876532  1    12  3356655331000                 00


Q ss_pred             hhHhhhhhCCCcccceeEE---CCEE--eeCCCCH
Q 019491          295 KIAKACSDAKIEGFPTWVI---NGQV--LSGEQDL  324 (340)
Q Consensus       295 k~~~lC~~~~I~GyPTw~i---nG~~--y~G~r~l  324 (340)
                      ...+++++++|+++||..+   +|+.  ..|.++.
T Consensus        96 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~  130 (143)
T 2lus_A           96 PASNVTAKYGITGIPALVIVKKDGTLISMNGRGEV  130 (143)
Confidence            0137899999999999776   5762  3444444

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.09  E-value=6.6e-06  Score=70.60  Aligned_cols=90  Identities=10%  Similarity=0.034  Sum_probs=56.7

Q ss_pred             HHHHHHhhccc-CeEEEccCCCHHHHHHHHHHhHHh--h--ccCc--eeECCCCCC----CCC-----------------
Q 019491          242 ALSLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPDGY----RKG-----------------  293 (340)
Q Consensus       242 ~~~la~~L~~~-g~~~YgA~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~g~----~~~-----------------  293 (340)
                      .+.+++.-.+. -+++|+|.|||+|+++.+.+.+..  .  +.+.  .|++++...    ...                 
T Consensus        37 ~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~  116 (196)
T 2ywi_A           37 VVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLY  116 (196)
T ss_dssp             EEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEE
T ss_pred             EEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEE
Confidence            44566554443 577999999999999988776532  1  1233  566654210    000                 


Q ss_pred             hhhHhhhhhCCCcccceeEE---CCE-Ee-----------eCCCCHHHHHHHh
Q 019491          294 TKIAKACSDAKIEGFPTWVI---NGQ-VL-----------SGEQDLSDLAKAS  331 (340)
Q Consensus       294 ~k~~~lC~~~~I~GyPTw~i---nG~-~y-----------~G~r~l~~La~~s  331 (340)
                      ....++.++++|.++||..+   +|+ ++           .|..+.++|.+..
T Consensus       117 d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i  169 (196)
T 2ywi_A          117 DETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAAL  169 (196)
T ss_dssp             CSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHH
T ss_pred             CCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHH
Confidence            01236788999999999776   676 23           4666777776543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.08  E-value=8.2e-06  Score=69.56  Aligned_cols=86  Identities=17%  Similarity=0.234  Sum_probs=55.6

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc--c--CceeECCCCCCCCChhhHhhhhhCCCc---------
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--Q--LNYVECFPDGYRKGTKIAKACSDAKIE---------  306 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~---------  306 (340)
                      .+.+++.-.+.-++.|+|.|||+|+++.+.+.+..  .+  .  +-.|+++.+..   ....+.+++++++         
T Consensus        52 ~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~---~~~~~~~~~~~~~~~~~~~d~~  128 (186)
T 1jfu_A           52 PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDP---EKPKTFLKEANLTRLGYFNDQK  128 (186)
T ss_dssp             EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCT---THHHHHHHHTTCCTTCCEECTT
T ss_pred             EeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCH---HHHHHHHHHcCCCCCceEECCc
Confidence            34455544455577889999999999988876642  11  2  33566664311   1245677888875         


Q ss_pred             --------------ccceeEE---CCE---EeeCCCC--HHHHHHH
Q 019491          307 --------------GFPTWVI---NGQ---VLSGEQD--LSDLAKA  330 (340)
Q Consensus       307 --------------GyPTw~i---nG~---~y~G~r~--l~~La~~  330 (340)
                                    ++||..+   +|+   ++.|..+  .++|.++
T Consensus       129 ~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~  174 (186)
T 1jfu_A          129 AKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKL  174 (186)
T ss_dssp             CHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHH
T ss_pred             chHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHH
Confidence                          8999765   676   5788765  5555543

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=98.08  E-value=4e-06  Score=71.26  Aligned_cols=83  Identities=14%  Similarity=0.207  Sum_probs=60.9

Q ss_pred             chhHHHHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE
Q 019491          239 SPFALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI  313 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i  313 (340)
                      ......+.+.+++..+++|.-     ||||+|++.|+++.+. .....+||.+.+.   . -+.++-+..|.+.+|..+|
T Consensus        22 ~~~~~~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-gv~y~~vdI~~d~---~-~~~~L~~~~G~~tvP~VfI   96 (135)
T 2wci_A           22 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAAC-GERFAYVDILQNP---D-IRAELPKYANWPTFPQLWV   96 (135)
T ss_dssp             CHHHHHHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTT-CSCCEEEEGGGCH---H-HHHHHHHHHTCCSSCEEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHc-CCceEEEECCCCH---H-HHHHHHHHHCCCCcCEEEE
Confidence            345666777777788999988     9999999999999874 3345567776542   1 1345555569999999999


Q ss_pred             CCEEeeCCCCHHH
Q 019491          314 NGQVLSGEQDLSD  326 (340)
Q Consensus       314 nG~~y~G~r~l~~  326 (340)
                      ||+.+-|-.++.+
T Consensus        97 ~G~~iGG~d~l~~  109 (135)
T 2wci_A           97 DGELVGGCDIVIE  109 (135)
T ss_dssp             TTEEEESHHHHHH
T ss_pred             CCEEEEChHHHHH
Confidence            9998877655543

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.06  E-value=1.1e-05  Score=69.70  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             chhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491          239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV  312 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~  312 (340)
                      =+.+++.|+.-++.=++.|+|+||+.|++++. .|.....+     .+-.|.++.+..    ...++.++++|.||||..
T Consensus        31 ~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~----~~~~l~~~y~v~~~P~~~  106 (153)
T 2dlx_A           31 FETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSE----EGQRYIQFYKLGDFPYVS  106 (153)
T ss_dssp             HHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSH----HHHHHHHHHTCCSSSEEE
T ss_pred             HHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCH----hHHHHHHHcCCCCCCEEE
Confidence            34555667777777788999999999999965 67654322     222333333321    135788999999999987


Q ss_pred             E---C-CE---EeeCCCCHHHHHHHh
Q 019491          313 I---N-GQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       313 i---n-G~---~y~G~r~l~~La~~s  331 (340)
                      +   + |+   ++.| .+.+++.+..
T Consensus       107 fld~~~G~~l~~~~g-~~~~~fl~~L  131 (153)
T 2dlx_A          107 ILDPRTGQKLVEWHQ-LDVSSFLDQV  131 (153)
T ss_dssp             EECTTTCCCCEEESS-CCHHHHHHHH
T ss_pred             EEeCCCCcEeeecCC-CCHHHHHHHH
Confidence            6   4 64   4666 7988876543

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.06  E-value=2.3e-06  Score=72.89  Aligned_cols=76  Identities=11%  Similarity=0.130  Sum_probs=49.3

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc---c--CceeECCCCCC--------C--------CChhhHh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGY--------R--------KGTKIAK  298 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~---~--l~yVeC~~~g~--------~--------~~~k~~~  298 (340)
                      .+.|++.-.+.-+++|+|.|||+|+++.+.+.+.+  .+   .  +-.|+++.+..        +        ......+
T Consensus        40 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (165)
T 3s9f_A           40 TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEA  119 (165)
T ss_dssp             EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHH
T ss_pred             cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHH
Confidence            44555554555577899999999999998876642  11   2  33566654310        0        0000158


Q ss_pred             hhhhCCCcccceeEE---C-CEE
Q 019491          299 ACSDAKIEGFPTWVI---N-GQV  317 (340)
Q Consensus       299 lC~~~~I~GyPTw~i---n-G~~  317 (340)
                      ++++++|+++||.++   + |+.
T Consensus       120 l~~~~~v~~~Pt~~lid~~~G~i  142 (165)
T 3s9f_A          120 LTKKYSVESIPTLIGLNADTGDT  142 (165)
T ss_dssp             HHHHTTCCSSSEEEEEETTTCCE
T ss_pred             HHHHcCCCCCCEEEEEeCCCCEE
Confidence            899999999999776   4 764

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.06  E-value=1.2e-06  Score=72.01  Aligned_cols=72  Identities=10%  Similarity=0.116  Sum_probs=47.7

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc---c--CceeECCCCCC--------CC--------ChhhHh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGY--------RK--------GTKIAK  298 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~---~--l~yVeC~~~g~--------~~--------~~k~~~  298 (340)
                      .+.+++.-.+.-+++|+|.|||+|+++.+.+.+.+  .+   .  +-.|+++.+..        .+        .....+
T Consensus        20 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~   99 (146)
T 1o8x_A           20 EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQK   99 (146)
T ss_dssp             EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHH
T ss_pred             CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHH
Confidence            45566554556678899999999999998886632  11   2  34677764210        00        001357


Q ss_pred             hhhhCCCcccceeEE
Q 019491          299 ACSDAKIEGFPTWVI  313 (340)
Q Consensus       299 lC~~~~I~GyPTw~i  313 (340)
                      ++++++|+++||..+
T Consensus       100 ~~~~~~v~~~Pt~~l  114 (146)
T 1o8x_A          100 LSKHFNVESIPTLIG  114 (146)
T ss_dssp             HHHHTTCCSSSEEEE
T ss_pred             HHHHhCCCCCCEEEE
Confidence            899999999999775

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.02  E-value=1.5e-05  Score=67.79  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=31.0

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .++.++.||+|.||++|||+.+.|.++.++|.++.
T Consensus       139 ~~~a~~~gv~gtPt~vvng~~~~G~~~~~~l~~~i  173 (175)
T 1z6m_A          139 IAEANAAHIQFVPTIIIGEYIFDESVTEEELRGYI  173 (175)
T ss_dssp             HHHHHHHTCCSSCEEEETTEEECTTCCHHHHHHHH
T ss_pred             HHHHHHcCCCCcCeEEECCEEccCCCCHHHHHHHh
Confidence            34577889999999999999999999999999875

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=97.98  E-value=5.8e-06  Score=67.49  Aligned_cols=71  Identities=10%  Similarity=0.051  Sum_probs=46.1

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc---c--CceeECCCCCC--------CC--------ChhhHhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGY--------RK--------GTKIAKA  299 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~---~--l~yVeC~~~g~--------~~--------~~k~~~l  299 (340)
                      +.+++.-.+.-+++|+|+|||+|+++.+.+.+.+  .+   .  +-.|+++.+..        ++        .....++
T Consensus        21 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  100 (144)
T 1i5g_A           21 IALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL  100 (144)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             ecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHH
Confidence            3444443455578899999999999998886642  11   2  33566664210        00        0012578


Q ss_pred             hhhCCCcccceeEE
Q 019491          300 CSDAKIEGFPTWVI  313 (340)
Q Consensus       300 C~~~~I~GyPTw~i  313 (340)
                      +++++|+++||.++
T Consensus       101 ~~~~~v~~~P~~~l  114 (144)
T 1i5g_A          101 TTGFDVKSIPTLVG  114 (144)
T ss_dssp             HHHTTCCSSSEEEE
T ss_pred             HHHcCCCCCCEEEE
Confidence            99999999999775

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.97  E-value=6.1e-06  Score=71.48  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=28.5

Q ss_pred             hhhhhCCCcccceeEECCEEee---CCCCHHHHHHHh
Q 019491          298 KACSDAKIEGFPTWVINGQVLS---GEQDLSDLAKAS  331 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~inG~~y~---G~r~l~~La~~s  331 (340)
                      ++.++.||+|.||.+|||+.+.   |.++.|+|.+..
T Consensus       143 ~~a~~~gv~gtPt~~vng~~~~~~~G~~~~e~l~~~i  179 (192)
T 3h93_A          143 KLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLA  179 (192)
T ss_dssp             HHHHHHTCCSSSEEEETTTEEEEHHHHTSHHHHHHHH
T ss_pred             HHHHHhCCCCCCeEEECCEEEecccccCCHHHHHHHH
Confidence            4567789999999999998654   999999988764

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=97.96  E-value=1.4e-05  Score=77.81  Aligned_cols=90  Identities=14%  Similarity=0.093  Sum_probs=59.4

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc--cC--ceeECCCCCCCCC-------------------hhh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK--QL--NYVECFPDGYRKG-------------------TKI  296 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~--~l--~yVeC~~~g~~~~-------------------~k~  296 (340)
                      .+.+.+.-.+.-+++|+|+|||+|+++.+.+.+.+  .+  .+  -.|+|++...+..                   .+.
T Consensus        74 ~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~  153 (352)
T 2hyx_A           74 PIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNN  153 (352)
T ss_dssp             CCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTT
T ss_pred             EEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCc
Confidence            44555554556677899999999999998876642  11  23  3566653110000                   001


Q ss_pred             HhhhhhCCCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      .+++++++|+++||.++   ||+   ++.|..+.++|.++.
T Consensus       154 ~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I  194 (352)
T 2hyx_A          154 YATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLV  194 (352)
T ss_dssp             SHHHHHTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHH
T ss_pred             HHHHHHcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHH
Confidence            47899999999999665   676   588999988876653

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.94  E-value=1.4e-05  Score=69.31  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.0

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~  275 (340)
                      -+++|++||||||+++.+.+.+.
T Consensus        28 ~vv~f~d~~Cp~C~~~~~~l~~l   50 (195)
T 3hd5_A           28 EVLEFFAYTCPHCAAIEPMVEDW   50 (195)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCccHHHhhHHHHHH
Confidence            37899999999999999988664

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.94  E-value=4.4e-06  Score=76.26  Aligned_cols=37  Identities=19%  Similarity=0.069  Sum_probs=31.1

Q ss_pred             HhhhhhCCCcccceeEEC---CE--EeeCCCCHHHHHHHhCC
Q 019491          297 AKACSDAKIEGFPTWVIN---GQ--VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~in---G~--~y~G~r~l~~La~~sg~  333 (340)
                      .++.++.||+|.||.+++   |+  ++.|.++.++|.++..-
T Consensus       189 ~~l~~~~gv~gtPt~vi~~~~G~~~~~~G~~~~~~L~~~l~~  230 (241)
T 1v58_A          189 EKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMGN  230 (241)
T ss_dssp             HHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHHHH
Confidence            456788999999999983   64  58999999999998754

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.90  E-value=2e-05  Score=67.40  Aligned_cols=79  Identities=19%  Similarity=0.297  Sum_probs=54.8

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccC------------------ceeECCCCC-----------C---------CCChh
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQL------------------NYVECFPDG-----------Y---------RKGTK  295 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l------------------~yVeC~~~g-----------~---------~~~~k  295 (340)
                      +++|.-|+||+|+++.+.+.+....++                  ..+.|..|.           .         +.-.+
T Consensus        18 vv~f~D~~Cp~C~~~~~~l~~l~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~~~~~~~v~~   97 (147)
T 3gv1_A           18 VAVFSDPDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSICDNPVAE   97 (147)
T ss_dssp             EEEEECTTCHHHHHHHHHHTTCCSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTCCCCSCSHHH
T ss_pred             EEEEECCCChhHHHHHHHHhhcCceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            789999999999999877543100000                  123343210           0         00012


Q ss_pred             hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHHhC
Q 019491          296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKASG  332 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~sg  332 (340)
                      ..++.++.||+|.||+++ ||+++.|.++.++|.++..
T Consensus        98 ~~~la~~~gI~gtPt~vi~nG~~i~G~~~~~~l~~~i~  135 (147)
T 3gv1_A           98 TTSLGEQFGFNGTPTLVFPNGRTQSGYSPMPQLEEIIR  135 (147)
T ss_dssp             HHHHHHHTTCCSSCEEECTTSCEEESCCCTTHHHHHHH
T ss_pred             HHHHHHHhCCCccCEEEEECCEEeeCCCCHHHHHHHHH
Confidence            467889999999999999 8999999999999988754

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=97.90  E-value=1.4e-05  Score=68.36  Aligned_cols=80  Identities=8%  Similarity=0.007  Sum_probs=48.7

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--cc-Cc--eeECCCCCC----CCC-----------------hh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ-LN--YVECFPDGY----RKG-----------------TK  295 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~-l~--yVeC~~~g~----~~~-----------------~k  295 (340)
                      .+.+++.-.+.-+++|+|+|||+|+++.+.+.+...  .. +.  .|++++...    ...                 ..
T Consensus        25 ~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~  104 (188)
T 2cvb_A           25 RYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDE  104 (188)
T ss_dssp             EEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECS
T ss_pred             EEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECC
Confidence            344555444555778999999999998887765321  11 33  566643110    000                 00


Q ss_pred             hHhhhhhCCCcccceeEE---CCE-EeeCC
Q 019491          296 IAKACSDAKIEGFPTWVI---NGQ-VLSGE  321 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i---nG~-~y~G~  321 (340)
                      ..++.++++|.++||.++   +|+ ++.|.
T Consensus       105 ~~~~~~~~~v~~~P~~~lid~~G~i~~~g~  134 (188)
T 2cvb_A          105 TQEVAKAYRALRTPEVFLFDERRLLRYHGR  134 (188)
T ss_dssp             SSHHHHHTTCCEESEEEEECTTCBEEEEEC
T ss_pred             cchHHHHcCCCCCCeEEEECCCCcEEEEEe
Confidence            236788999999999766   676 45444

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=97.86  E-value=4e-05  Score=62.52  Aligned_cols=90  Identities=9%  Similarity=0.021  Sum_probs=54.6

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc----cCc--eeECCCCCC--------------C----CChhhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLN--YVECFPDGY--------------R----KGTKIA  297 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~--yVeC~~~g~--------------~----~~~k~~  297 (340)
                      .+.|++.-.+.-++.|+|.|||+|+++.+.+.+...+    .+.  .|..+++..              .    ......
T Consensus        24 ~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  103 (143)
T 4fo5_A           24 KASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKES  103 (143)
T ss_dssp             CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGS
T ss_pred             EEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccch
Confidence            4444444344557789999999999999888764321    233  344443210              0    000013


Q ss_pred             hhhhhCCCcccceeEE---CCEEeeCCCCHHHHHHHh
Q 019491          298 KACSDAKIEGFPTWVI---NGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~i---nG~~y~G~r~l~~La~~s  331 (340)
                      ++.++++|+++||..+   ||+...-..+.++|.+..
T Consensus       104 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~l~~~l  140 (143)
T 4fo5_A          104 ELYKKYDLRKGFKNFLINDEGVIIAANVTPEKLTEIL  140 (143)
T ss_dssp             HHHHHTTGGGCCCEEEECTTSBEEEESCCHHHHHHHH
T ss_pred             HHHHHcCCCCCCcEEEECCCCEEEEccCCHHHHHHHH
Confidence            6788899999998665   687543344567777654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.08  E-value=2e-06  Score=71.44  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=25.7

Q ss_pred             hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      ..+.+++.-.+.-+++|+|.|||+|+++.+.+.+
T Consensus        24 ~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~   57 (159)
T 2ls5_A           24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEK   57 (159)
Confidence            3455665545556778899999999999887776

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.85  E-value=6.1e-05  Score=62.54  Aligned_cols=77  Identities=14%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh-ccCc--eeECCCCCCCCChhhHhhhhhCCCcc-cceeEE--CCEE----ee
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV-KQLN--YVECFPDGYRKGTKIAKACSDAKIEG-FPTWVI--NGQV----LS  319 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~-~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~G-yPTw~i--nG~~----y~  319 (340)
                      .+.-+++|.|.|||-|+...+.|.+.+. .++.  +||.+.+   +.. -.++++++||++ -||+++  ||+.    --
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~~~v~~~~vdVde~---r~~-Sn~IA~~~~V~h~sPq~il~k~G~~v~~~SH   99 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQQE---RDL-SDYIAKKTNVKHESPQAFYFVNGEMVWNRDH   99 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGG---HHH-HHHHHHHHTCCCCSSEEEEEETTEEEEEEEG
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhccCCceEEEEEeecC---chh-hHHHHHHhCCccCCCeEEEEECCEEEEEeec
Confidence            5556889999999999999999987542 2344  5666533   100 034899999995 999887  9973    45


Q ss_pred             CCCCHHHHHHH
Q 019491          320 GEQDLSDLAKA  330 (340)
Q Consensus       320 G~r~l~~La~~  330 (340)
                      +.-+.++|++.
T Consensus       100 ~~I~~~~l~~~  110 (112)
T 3iv4_A          100 GDINVSSLAQA  110 (112)
T ss_dssp             GGCSHHHHHHH
T ss_pred             cccCHHHHHHh
Confidence            66777777765

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.76  E-value=6.6e-05  Score=65.88  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             hhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          298 KACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      +..++.||+|.||++|||+.+.|..+.++|.+..
T Consensus       145 ~~a~~~gv~gtPt~vvng~~~~~~~~~e~l~~~i  178 (193)
T 3hz8_A          145 ELTETFQIDGVPTVIVGGKYKVEFADWESGMNTI  178 (193)
T ss_dssp             HHHHHTTCCSSSEEEETTTEEECCSSHHHHHHHH
T ss_pred             HHHHHhCCCcCCEEEECCEEEecCCCHHHHHHHH
Confidence            4456789999999999999887766888887654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.76  E-value=2.6e-05  Score=70.09  Aligned_cols=72  Identities=18%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      ++..+++|..+|||+|++.|+++.+. ......+|.+.+.  .   ..++-+..|.+++|+.++||+..-|   .++|.+
T Consensus       168 ~~~~i~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~~i~~~~--~---~~~l~~~~g~~~vP~~~~~g~~i~g---~~~i~~  238 (241)
T 1nm3_A          168 VQESISIFTKPGCPFCAKAKQLLHDK-GLSFEEIILGHDA--T---IVSVRAVSGRTTVPQVFIGGKHIGG---SDDLEK  238 (241)
T ss_dssp             CCCCEEEEECSSCHHHHHHHHHHHHH-TCCCEEEETTTTC--C---HHHHHHHTCCSSSCEEEETTEEEES---HHHHHH
T ss_pred             ccceEEEEECCCChHHHHHHHHHHHc-CCceEEEECCCch--H---HHHHHHHhCCCCcCEEEECCEEEEC---HHHHHH
Confidence            35568899999999999999999874 3345567776542  1   3567777899999999999987765   445554


Q ss_pred             H
Q 019491          330 A  330 (340)
Q Consensus       330 ~  330 (340)
                      +
T Consensus       239 ~  239 (241)
T 1nm3_A          239 Y  239 (241)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=97.75  E-value=5.3e-05  Score=62.33  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=53.6

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcc--cceeEE--C--CEEee----C
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI--N--GQVLS----G  320 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~G--yPTw~i--n--G~~y~----G  320 (340)
                      ++.|+|+ |++|+.+.+.|.+.|.+   ++.++-.+.|.      ..++.+++||++  .||..+  +  |+.|.    |
T Consensus        27 ~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~------~~~~a~~~gi~~~~iPtl~i~~~~~g~~~~~~~~g   99 (133)
T 2djk_A           27 AYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKA------FGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEK   99 (133)
T ss_dssp             EEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTT------TGGGTTTTTCCSSSSSEEEEECTTTCCBCCCCSSS
T ss_pred             EEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHH------hHHHHHHcCCCcccCCEEEEEecCcCcccCCCCcc
Confidence            5678899 78999999999887643   34444444332      247889999999  999887  4  76543    9


Q ss_pred             CCCHHHHHHHhC
Q 019491          321 EQDLSDLAKASG  332 (340)
Q Consensus       321 ~r~l~~La~~sg  332 (340)
                      ..+.++|.+|..
T Consensus       100 ~~~~~~l~~fi~  111 (133)
T 2djk_A          100 EITFEAIKAFVD  111 (133)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             ccCHHHHHHHHH
Confidence            999999988853

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=97.74  E-value=2.2e-05  Score=61.22  Aligned_cols=71  Identities=13%  Similarity=0.070  Sum_probs=51.1

Q ss_pred             CeEEEccCCCHHH------HHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC--CcccceeEECCEEeeCCCCH
Q 019491          253 GAKMYGAFWCSHC------LEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVLSGEQDL  324 (340)
Q Consensus       253 g~~~YgA~WCpHC------~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~--I~GyPTw~inG~~y~G~r~l  324 (340)
                      .+++|+.+|||+|      ++.|.++.+. .....++|.+.+.   . .+.++-+..|  .+.+|..+|||+..-|-.++
T Consensus         3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~-~i~~~~~di~~~~---~-~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l   77 (93)
T 1t1v_A            3 GLRVYSTSVTGSREIKSQQSEVTRILDGK-RIQYQLVDISQDN---A-LRDEMRTLAGNPKATPPQIVNGNHYCGDYELF   77 (93)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHHT-TCCCEEEETTSCH---H-HHHHHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred             CEEEEEcCCCCCchhhHHHHHHHHHHHHC-CCceEEEECCCCH---H-HHHHHHHHhCCCCCCCCEEEECCEEEeCHHHH
Confidence            4789999999999      8999998764 3344567776442   1 1345555667  78999999999987776666


Q ss_pred             HHHH
Q 019491          325 SDLA  328 (340)
Q Consensus       325 ~~La  328 (340)
                      .+|.
T Consensus        78 ~~l~   81 (93)
T 1t1v_A           78 VEAV   81 (93)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=97.69  E-value=5.5e-05  Score=62.17  Aligned_cols=80  Identities=13%  Similarity=0.086  Sum_probs=49.9

Q ss_pred             cccCeEEEccCCCHH--HHHHHHHHhHHh--h---ccCc--eeECCCCCCC-----------------CChhhHhhhhhC
Q 019491          250 HAIGAKMYGAFWCSH--CLEQKQMFGSEA--V---KQLN--YVECFPDGYR-----------------KGTKIAKACSDA  303 (340)
Q Consensus       250 ~~~g~~~YgA~WCpH--C~~qk~lfgk~A--~---~~l~--yVeC~~~g~~-----------------~~~k~~~lC~~~  303 (340)
                      .+.-++.|+|.|||+  |+++.+.+.+..  .   +.+.  .|..+.+...                 ......++.+++
T Consensus        33 gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  112 (150)
T 3fw2_A           33 QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQY  112 (150)
T ss_dssp             TSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHc
Confidence            344577889999999  999988876642  2   1233  4555533100                 000013789999


Q ss_pred             CCcccceeEE---CCEE-eeCCCCHHHHHHH
Q 019491          304 KIEGFPTWVI---NGQV-LSGEQDLSDLAKA  330 (340)
Q Consensus       304 ~I~GyPTw~i---nG~~-y~G~r~l~~La~~  330 (340)
                      +|+++||..+   +|+. +.. .+.++|.+.
T Consensus       113 ~v~~~P~~~lid~~G~i~~~~-~~~~~l~~~  142 (150)
T 3fw2_A          113 SIYKIPANILLSSDGKILAKN-LRGEELKKK  142 (150)
T ss_dssp             TCCSSSEEEEECTTSBEEEES-CCHHHHHHH
T ss_pred             CCCccCeEEEECCCCEEEEcc-CCHHHHHHH
Confidence            9999999776   6773 333 366666654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.64  E-value=1.9e-05  Score=68.21  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=28.3

Q ss_pred             HhhhhhCCCcccceeEECCEE-eeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQV-LSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~-y~G~r~l~~La~~s  331 (340)
                      .++.++.||+|.||++|||+. ..|.++.++|.+..
T Consensus       140 ~~~a~~~gv~gtPt~ving~~~~~g~~~~~~l~~~i  175 (195)
T 2znm_A          140 QKLTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTI  175 (195)
T ss_dssp             HHHHHHTTCCSSSEEEETTTEEECCCSHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCeEEECCEEEEcCCCCHHHHHHHH
Confidence            355778999999999999984 88888888876553

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.58  E-value=3.4e-05  Score=62.61  Aligned_cols=66  Identities=5%  Similarity=-0.072  Sum_probs=45.3

Q ss_pred             CeEEEccCCCHHHH------HHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhC--------CCcccceeEECCEEe
Q 019491          253 GAKMYGAFWCSHCL------EQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA--------KIEGFPTWVINGQVL  318 (340)
Q Consensus       253 g~~~YgA~WCpHC~------~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~--------~I~GyPTw~inG~~y  318 (340)
                      .+++|+.+|||+|+      +.|.++.+. .....+||.+.+.   . .+.++-+..        |...+|..+|||+.+
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~-gi~y~~vdI~~~~---~-~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~i   83 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEAN-KIEFEEVDITMSE---E-QRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYC   83 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHHT-TCCEEEEETTTCH---H-HHHHHHHSCCTTTCCSSSSCCSCEEEETTEEE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHHc-CCCEEEEECCCCH---H-HHHHHHHHhcccccccCCCCCCCEEEECCEEE
Confidence            47899999999999      788888763 2234456666442   1 123344443        888899999999866


Q ss_pred             eCCCC
Q 019491          319 SGEQD  323 (340)
Q Consensus       319 ~G~r~  323 (340)
                      -|-.+
T Consensus        84 GG~d~   88 (111)
T 2ct6_A           84 GDYDS   88 (111)
T ss_dssp             EEHHH
T ss_pred             eCHHH
Confidence            55444

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=97.57  E-value=0.0001  Score=65.56  Aligned_cols=79  Identities=10%  Similarity=0.085  Sum_probs=50.4

Q ss_pred             HHHHHHhhccc-CeEEEccCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCC----CC------------------
Q 019491          242 ALSLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY----RK------------------  292 (340)
Q Consensus       242 ~~~la~~L~~~-g~~~YgA~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~----~~------------------  292 (340)
                      .+.|++...+. -+++|+|.|||+|+++.+.+.+.+  ++  .+.  .|.+++.+.    ..                  
T Consensus        50 ~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~  129 (218)
T 3u5r_E           50 LFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLK  129 (218)
T ss_dssp             EECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEE
T ss_pred             EEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEE
Confidence            34566555553 577899999999999988876643  11  133  566642110    00                  


Q ss_pred             ChhhHhhhhhCCCcccceeEE---CCE-EeeCC
Q 019491          293 GTKIAKACSDAKIEGFPTWVI---NGQ-VLSGE  321 (340)
Q Consensus       293 ~~k~~~lC~~~~I~GyPTw~i---nG~-~y~G~  321 (340)
                      + ...++.++++|+++||..+   +|+ +|.|.
T Consensus       130 D-~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~  161 (218)
T 3u5r_E          130 D-ASQSVAKAYGAACTPDFFLYDRERRLVYHGQ  161 (218)
T ss_dssp             C-TTCHHHHHHTCCEESEEEEECTTCBEEEEEC
T ss_pred             C-CccHHHHHcCCCCCCeEEEECCCCcEEEecc
Confidence            0 0247889999999999776   676 56653

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.55  E-value=0.00013  Score=62.68  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             hhhhhCCCcccceeEECCEEe-eCCCCHHHHHHHh
Q 019491          298 KACSDAKIEGFPTWVINGQVL-SGEQDLSDLAKAS  331 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~inG~~y-~G~r~l~~La~~s  331 (340)
                      ++.++.||+|.||++|||+.+ .|. +.++|.+..
T Consensus       146 ~~a~~~gv~gtPt~ving~~~~~g~-~~~~l~~~i  179 (193)
T 2rem_A          146 AYALKVRPVGTPTIVVNGRYMVTGH-DFEDTLRIT  179 (193)
T ss_dssp             HHHHHHCCSSSSEEEETTTEEECCS-SHHHHHHHH
T ss_pred             HHHHHhCCCCCCeEEECCEEEecCC-CHHHHHHHH
Confidence            456778999999999999865 777 888887654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=97.53  E-value=0.00019  Score=59.80  Aligned_cols=82  Identities=9%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             cccCeEEEccCCCHH-HHHHHHHHhHHh--h------ccCc--eeECCCCCCCCC--------------------hhhHh
Q 019491          250 HAIGAKMYGAFWCSH-CLEQKQMFGSEA--V------KQLN--YVECFPDGYRKG--------------------TKIAK  298 (340)
Q Consensus       250 ~~~g~~~YgA~WCpH-C~~qk~lfgk~A--~------~~l~--yVeC~~~g~~~~--------------------~k~~~  298 (340)
                      .+.-++.|+|.|||+ |+.+.+.+.+..  .      ..+.  .|.++++.....                    ....+
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ  105 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            345577899999998 999988775532  1      1333  567765321100                    01136


Q ss_pred             hhhhCCCcccc---------------e-eEE--CCE---EeeCCCCHHHHHHHh
Q 019491          299 ACSDAKIEGFP---------------T-WVI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       299 lC~~~~I~GyP---------------T-w~i--nG~---~y~G~r~l~~La~~s  331 (340)
                      +.+++||.+.|               | ++|  +|+   +|.|..+.++|.+..
T Consensus       106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l  159 (171)
T 2rli_A          106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSV  159 (171)
T ss_dssp             HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHH
T ss_pred             HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHH
Confidence            78899999999               5 555  675   689999998887653

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=97.49  E-value=0.00023  Score=58.69  Aligned_cols=87  Identities=14%  Similarity=0.246  Sum_probs=56.1

Q ss_pred             HHHhhcccCeEEEccCCCHH-HHHHHHHHhHHh--h------ccC--ceeECCCCCCCC--------------------C
Q 019491          245 LAKHLHAIGAKMYGAFWCSH-CLEQKQMFGSEA--V------KQL--NYVECFPDGYRK--------------------G  293 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpH-C~~qk~lfgk~A--~------~~l--~yVeC~~~g~~~--------------------~  293 (340)
                      +++.-.+.-++.|+|.|||+ |+.+.+.+.+..  .      +.+  -.|.++++....                    .
T Consensus        18 l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~   97 (164)
T 2ggt_A           18 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTR   97 (164)
T ss_dssp             GGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCH
T ss_pred             HHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCH
Confidence            33333445577899999997 999988776532  1      133  356776532110                    0


Q ss_pred             hhhHhhhhhCCCcccc---------------e-eEE--CCE---EeeCCCCHHHHHHHh
Q 019491          294 TKIAKACSDAKIEGFP---------------T-WVI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       294 ~k~~~lC~~~~I~GyP---------------T-w~i--nG~---~y~G~r~l~~La~~s  331 (340)
                      ....++.+++||.+.|               + .+|  +|+   ++.|..+.++|.+..
T Consensus        98 d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l  156 (164)
T 2ggt_A           98 EEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASI  156 (164)
T ss_dssp             HHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHH
T ss_pred             HHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHH
Confidence            1123578899999999               4 445  676   588999988887653

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=97.47  E-value=0.00013  Score=71.60  Aligned_cols=88  Identities=13%  Similarity=0.095  Sum_probs=58.1

Q ss_pred             chhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHh--hccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECC
Q 019491          239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING  315 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A--~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG  315 (340)
                      .+....+.+-+++..+++|..+|||+|++.|+ ++.+..  +..++.+|.+....+. .-+.++-+..|.+.+|...|||
T Consensus       248 ~~~~~~V~~lI~~~~VvVYsk~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~-e~~~~L~~~tG~~TVPqVFI~G  326 (362)
T 2jad_A          248 QETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGA-DIQAALYEINGQRTVPNIYING  326 (362)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECTTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHH-HHHHHHHHHHCCCSSCEEEETT
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCH-HHHHHHHHHHCCCCcCEEEECC
Confidence            34455667777888899999999999999997 676532  1223344544221111 1134455557999999999999


Q ss_pred             EEeeCCCCHHHH
Q 019491          316 QVLSGEQDLSDL  327 (340)
Q Consensus       316 ~~y~G~r~l~~L  327 (340)
                      +..-|-.++.+|
T Consensus       327 k~IGG~DdL~~L  338 (362)
T 2jad_A          327 KHIGGNDDLQEL  338 (362)
T ss_dssp             EEEESHHHHHHH
T ss_pred             EEEEChHHHHHh
Confidence            988776544444

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.47  E-value=0.0002  Score=61.81  Aligned_cols=89  Identities=15%  Similarity=0.070  Sum_probs=52.3

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h--ccCc--eeECCCC---CCCCChhhHhhh-h-----------
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPD---GYRKGTKIAKAC-S-----------  301 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~---g~~~~~k~~~lC-~-----------  301 (340)
                      +.+++.-.+.-++.|+|.|||+|+++.+.+.+..  .  +.+.  .|.++..   ......+..+.+ +           
T Consensus        41 ~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~  120 (190)
T 2vup_A           41 YNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAK  120 (190)
T ss_dssp             CCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCC
T ss_pred             EEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEee
Confidence            3444443445577899999999999888776532  1  1233  5666520   000001112222 1           


Q ss_pred             ------------------hCCCcccc------e-eEE--CCE---EeeCCCCHHHHHHHh
Q 019491          302 ------------------DAKIEGFP------T-WVI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       302 ------------------~~~I~GyP------T-w~i--nG~---~y~G~r~l~~La~~s  331 (340)
                                        .++|.++|      | ++|  +|+   ++.|..+.++|.+..
T Consensus       121 ~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  180 (190)
T 2vup_A          121 INVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKL  180 (190)
T ss_dssp             CBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHH
T ss_pred             cccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHH
Confidence                              14899999      4 555  676   578988888877643

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=97.47  E-value=4.6e-05  Score=63.47  Aligned_cols=89  Identities=11%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             HHHHHHhhcccCeEEEccCCCHH-HHHHHHHHhHHhh--c-----cC--ceeECCCCCCCCChhh---------------
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSH-CLEQKQMFGSEAV--K-----QL--NYVECFPDGYRKGTKI---------------  296 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpH-C~~qk~lfgk~A~--~-----~l--~yVeC~~~g~~~~~k~---------------  296 (340)
                      .+.+++.-.+.-++.|+|.|||+ |+++.+.+.+...  +     .+  -.|+++++..... ..               
T Consensus        27 ~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~-~~~~~~~~~~~~~~~l~  105 (172)
T 2k6v_A           27 PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPE-VADRYAKAFHPSFLGLS  105 (172)
T ss_dssp             EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHH-HHHHHHHHHCTTEEEEC
T ss_pred             CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHH-HHHHHHHHhCCCcEEEe
Confidence            45566554555678899999996 9999888766321  1     23  3577765321110 00               


Q ss_pred             ------HhhhhhCC---------------CcccceeEE--CCE---EeeCCC--CHHHHHHHh
Q 019491          297 ------AKACSDAK---------------IEGFPTWVI--NGQ---VLSGEQ--DLSDLAKAS  331 (340)
Q Consensus       297 ------~~lC~~~~---------------I~GyPTw~i--nG~---~y~G~r--~l~~La~~s  331 (340)
                            .++++++|               |++.||..+  +|+   ++.|..  +.++|.+..
T Consensus       106 d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l  168 (172)
T 2k6v_A          106 GSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADL  168 (172)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHH
Confidence                  35555555               568899776  786   578887  888887654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=97.46  E-value=0.00029  Score=58.26  Aligned_cols=88  Identities=11%  Similarity=0.058  Sum_probs=51.5

Q ss_pred             HHHHHhhcc-cCeEEEc-cCCCHHHHHHHHHHhHHhhc----cCc--eeECCCCCCC--------------CCh-hhHhh
Q 019491          243 LSLAKHLHA-IGAKMYG-AFWCSHCLEQKQMFGSEAVK----QLN--YVECFPDGYR--------------KGT-KIAKA  299 (340)
Q Consensus       243 ~~la~~L~~-~g~~~Yg-A~WCpHC~~qk~lfgk~A~~----~l~--yVeC~~~g~~--------------~~~-k~~~l  299 (340)
                      +.+++.-.+ .-+..|+ |.|||+|+++.+.+.+.+.+    .+.  .|.++.....              .+. +..++
T Consensus        28 ~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  107 (160)
T 1xvw_A           28 VTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAV  107 (160)
T ss_dssp             EEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHH
T ss_pred             EeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHH
Confidence            445554443 4466776 99999999999888764211    222  4555421000              000 02467


Q ss_pred             hhhCCCc----ccc---eeEE--CCE---EeeCCC----CHHHHHHH
Q 019491          300 CSDAKIE----GFP---TWVI--NGQ---VLSGEQ----DLSDLAKA  330 (340)
Q Consensus       300 C~~~~I~----GyP---Tw~i--nG~---~y~G~r----~l~~La~~  330 (340)
                      .+++||.    ++|   |++|  +|+   ++.|..    +++++.+.
T Consensus       108 ~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~  154 (160)
T 1xvw_A          108 SQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDA  154 (160)
T ss_dssp             HHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHH
T ss_pred             HHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            8899999    999   5556  676   466654    45555543

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.44  E-value=0.00011  Score=61.06  Aligned_cols=33  Identities=9%  Similarity=-0.070  Sum_probs=24.4

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~  275 (340)
                      +.+++.-.+.-++.|+|.|||+|+++.+.+.+.
T Consensus        25 ~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l   57 (170)
T 2p5q_A           25 VDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQL   57 (170)
T ss_dssp             EEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHH
T ss_pred             ecHHHhCCCEEEEEEEeccCCccHHHHHHHHHH
Confidence            345554445557789999999999998877653

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.34  E-value=0.00052  Score=57.37  Aligned_cols=77  Identities=10%  Similarity=-0.039  Sum_probs=46.6

Q ss_pred             HHHHHhhccc-CeEEEc-cCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCCC--------------CChhhHhhh
Q 019491          243 LSLAKHLHAI-GAKMYG-AFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGYR--------------KGTKIAKAC  300 (340)
Q Consensus       243 ~~la~~L~~~-g~~~Yg-A~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~~--------------~~~k~~~lC  300 (340)
                      +.+++.-.+. -+..|+ |.|||+|+.+.+.+.+.+  .+  .+.  .|..+.....              .+ ...++.
T Consensus        21 ~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d-~~~~~~   99 (161)
T 3drn_A           21 ISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSD-PDKKIR   99 (161)
T ss_dssp             EEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEEC-TTSHHH
T ss_pred             EEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEEC-CcHHHH
Confidence            3444443444 466788 999999999988876532  11  133  3444310000              00 024788


Q ss_pred             hhCCCcc----cceeEE---CCE---EeeC
Q 019491          301 SDAKIEG----FPTWVI---NGQ---VLSG  320 (340)
Q Consensus       301 ~~~~I~G----yPTw~i---nG~---~y~G  320 (340)
                      +++||.|    +|+..+   +|+   ++.|
T Consensus       100 ~~~~v~~~~~~~P~~~lid~~G~i~~~~~g  129 (161)
T 3drn_A          100 ELYGAKGFILPARITFVIDKKGIIRHIYNS  129 (161)
T ss_dssp             HHTTCCCSSSCCCEEEEECTTSBEEEEEEC
T ss_pred             HHcCCCCcCcccceEEEECCCCEEEEEEec
Confidence            9999999    998665   676   4777

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=97.31  E-value=0.00027  Score=60.53  Aligned_cols=89  Identities=10%  Similarity=0.089  Sum_probs=53.0

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh----c--cCceeECCCCC--CC-CChhhHhhhhh-----------
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----K--QLNYVECFPDG--YR-KGTKIAKACSD-----------  302 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~----~--~l~yVeC~~~g--~~-~~~k~~~lC~~-----------  302 (340)
                      +.+++.-.+.-++.|+|.|||+|+++.+.+.+.+.    +  .+-.|.|+..+  .. ...+.++.+++           
T Consensus        42 ~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~  121 (181)
T 2p31_A           42 VSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSK  121 (181)
T ss_dssp             EEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCC
T ss_pred             ecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEee
Confidence            34555444555778999999999999887765321    1  23356665310  00 11112233333           


Q ss_pred             -------------CCCcccc--------eeEE--CCE---EeeCCCCHHHHHHHh
Q 019491          303 -------------AKIEGFP--------TWVI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       303 -------------~~I~GyP--------Tw~i--nG~---~y~G~r~l~~La~~s  331 (340)
                                   ++++++|        |++|  +|+   ++.|..+.++|.+..
T Consensus       122 ~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  176 (181)
T 2p31_A          122 IAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQI  176 (181)
T ss_dssp             CCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHH
T ss_pred             cccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHH
Confidence                         2366788        5556  676   588998999988754

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.00026  Score=59.72  Aligned_cols=30  Identities=10%  Similarity=-0.012  Sum_probs=21.6

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      .|++.-.+.-++.|+|.|||.|+ +.+.+.+
T Consensus        26 ~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~   55 (171)
T 3cmi_A           26 PFDQLKGKVVLIVNVASKCGFTP-QYKELEA   55 (171)
T ss_dssp             CGGGGTTCEEEEEEEESSSCCHH-HHHHHHH
T ss_pred             cHHHcCCCEEEEEEEecCCCcch-hHHHHHH
Confidence            34444445557788899999999 8777655

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=97.24  E-value=0.00038  Score=58.07  Aligned_cols=83  Identities=13%  Similarity=0.107  Sum_probs=59.7

Q ss_pred             HHHHHHhhcccCeEEEc-----cCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE
Q 019491          242 ALSLAKHLHAIGAKMYG-----AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ  316 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-----A~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~  316 (340)
                      ...+-+-+++..++.|.     +|.||+|++.|+++.+.-.....++|...|.    ..+..+.+..|-+.+|-.+|||+
T Consensus        10 ~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~----~~r~~l~~~sg~~TvPqIFI~g~   85 (118)
T 2wul_A           10 AEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDP----ELRQGIKDYSNWPTIPQVYLNGE   85 (118)
T ss_dssp             HHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCH----HHHHHHHHHHTCCSSCEEEETTE
T ss_pred             HHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCH----HHHHHHHHhccCCCCCeEeECCE
Confidence            34566777788888883     4789999999999976422235567766442    12567777778888999999999


Q ss_pred             EeeCCCCHHHHH
Q 019491          317 VLSGEQDLSDLA  328 (340)
Q Consensus       317 ~y~G~r~l~~La  328 (340)
                      -+-|-.++.+|.
T Consensus        86 ~IGG~Ddl~~l~   97 (118)
T 2wul_A           86 FVGGCDILLQMH   97 (118)
T ss_dssp             EEECHHHHHHHH
T ss_pred             EECCHHHHHHHH
Confidence            887766655543

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=97.18  E-value=0.00053  Score=56.77  Aligned_cols=32  Identities=16%  Similarity=0.060  Sum_probs=23.5

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      +.+++.-.+.-++.|+|.|||+|+++.+.+.+
T Consensus        24 ~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~   55 (169)
T 2v1m_A           24 VSLEKYRGHVCLIVNVACKCGATDKNYRQLQE   55 (169)
T ss_dssp             EEGGGGTTSEEEEEEECSSSTTHHHHHHHHHH
T ss_pred             ccHHHcCCCEEEEEEeeccCCchHHHHHHHHH
Confidence            34455444555778999999999998887765

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.11  E-value=0.00072  Score=56.98  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=28.5

Q ss_pred             HhhhhhCCCcccceeEECCEEe---eCCCCHHHHHHHhC
Q 019491          297 AKACSDAKIEGFPTWVINGQVL---SGEQDLSDLAKASG  332 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y---~G~r~l~~La~~sg  332 (340)
                      .++.++.||+|.||++||||..   .|.++.|++.+...
T Consensus       140 ~~~a~~~gv~gTPtfiINGky~v~~~~~~s~e~~~~~i~  178 (184)
T 4dvc_A          140 DKQFQDSGLTGVPAVVVNNRYLVQGQSAKSLDEYFDLVN  178 (184)
T ss_dssp             HHHHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHHHH
T ss_pred             HHHHHHcCCCcCCEEEECCEEeeCCcCCCCHHHHHHHHH
Confidence            3566788999999999999732   55788999887654

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.07  E-value=0.0008  Score=57.43  Aligned_cols=33  Identities=12%  Similarity=-0.068  Sum_probs=24.3

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~  275 (340)
                      +.+++.-.+.-++.|+|.|||+|+++.+.+.+.
T Consensus        40 ~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l   72 (183)
T 2obi_A           40 VNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDL   72 (183)
T ss_dssp             EEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHH
T ss_pred             eeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHH
Confidence            445554445557789999999999998877653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.02  E-value=0.00072  Score=68.63  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCC
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQ  322 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r  322 (340)
                      ..+.+.+++..+++|+.+|||+|++.|+++.+. .....++|.+.+..... -+..+-+..|.+.+|..++||+..-|-.
T Consensus         9 ~~v~~~i~~~~v~vy~~~~Cp~C~~~k~~L~~~-~i~~~~~dv~~~~~~~~-~~~~l~~~~g~~tvP~v~i~g~~igG~~   86 (598)
T 2x8g_A            9 QWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEA-KIKHATIELDQLSNGSA-IQKCLASFSKIETVPQMFVRGKFIGDSQ   86 (598)
T ss_dssp             HHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHT-TCCCEEEEGGGSTTHHH-HHHHTHHHHSCCCSCEEEETTEEEECHH
T ss_pred             HHHHHHhccCCEEEEECCCChhHHHHHHHHHHC-CCCcEEEEcccCcchHH-HHHHHHHHhCCceeCEEEECCEEEEeee
Confidence            455566677789999999999999999999874 33455677765421111 1233344578999999999998776644


Q ss_pred             C
Q 019491          323 D  323 (340)
Q Consensus       323 ~  323 (340)
                      +
T Consensus        87 ~   87 (598)
T 2x8g_A           87 T   87 (598)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=97.01  E-value=0.0005  Score=58.92  Aligned_cols=86  Identities=12%  Similarity=0.018  Sum_probs=52.7

Q ss_pred             HHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh--h--ccCc--eeECCCC--------------CCC----CChhhHh
Q 019491          244 SLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPD--------------GYR----KGTKIAK  298 (340)
Q Consensus       244 ~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~--------------g~~----~~~k~~~  298 (340)
                      .+++.-.+.-+..|+ |.|||+|+.+.+.+.+.+  .  +.+.  .|..++.              +.+    .+ ...+
T Consensus        25 ~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~  103 (187)
T 1we0_A           25 TEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGD-PSQT  103 (187)
T ss_dssp             ETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEEC-TTCH
T ss_pred             cHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEEC-CchH
Confidence            344433445577888 999999999988776532  1  1233  4555431              000    00 0246


Q ss_pred             hhhhCCCc------ccceeEE---CCE---EeeCCC----CHHHHHHH
Q 019491          299 ACSDAKIE------GFPTWVI---NGQ---VLSGEQ----DLSDLAKA  330 (340)
Q Consensus       299 lC~~~~I~------GyPTw~i---nG~---~y~G~r----~l~~La~~  330 (340)
                      +.+++||.      ++||..+   +|+   ++.|..    +.++|.+.
T Consensus       104 ~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~  151 (187)
T 1we0_A          104 ISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINK  151 (187)
T ss_dssp             HHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHH
T ss_pred             HHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            78899999      9999776   676   466653    66776654

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=96.93  E-value=0.00068  Score=58.68  Aligned_cols=87  Identities=9%  Similarity=0.061  Sum_probs=53.0

Q ss_pred             HHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCC--------------CCC----CChhhH
Q 019491          243 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPD--------------GYR----KGTKIA  297 (340)
Q Consensus       243 ~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~--------------g~~----~~~k~~  297 (340)
                      +.+++.-.+.-++.|+ |.|||+|+.+.+.+.+..  .+  .+.  .|..++.              +.+    .+ ...
T Consensus        38 v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d-~~~  116 (195)
T 2bmx_A           38 ITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSD-IKR  116 (195)
T ss_dssp             EETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEEC-TTS
T ss_pred             eeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeC-Cch
Confidence            3444443455577888 999999999988776532  11  233  4554431              000    00 024


Q ss_pred             hhhhhCCCc-----ccceeEE---CCE---EeeCCC----CHHHHHHH
Q 019491          298 KACSDAKIE-----GFPTWVI---NGQ---VLSGEQ----DLSDLAKA  330 (340)
Q Consensus       298 ~lC~~~~I~-----GyPTw~i---nG~---~y~G~r----~l~~La~~  330 (340)
                      ++.++++|.     ++||..+   +|+   ++.|..    +.++|.+.
T Consensus       117 ~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~  164 (195)
T 2bmx_A          117 ELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRV  164 (195)
T ss_dssp             HHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             HHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            678889999     9999766   676   455654    67776654

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=96.93  E-value=0.00083  Score=57.88  Aligned_cols=34  Identities=12%  Similarity=-0.086  Sum_probs=24.5

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~  275 (340)
                      .+.|++.-.+.-++.|+|.|||+|+++.+.+.+.
T Consensus        38 ~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l   71 (187)
T 3dwv_A           38 PYNLVQHKGSPLLIYNVASKCGYTKGGYETATTL   71 (187)
T ss_dssp             BCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHH
T ss_pred             EeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHH
Confidence            3445554445557789999999999988877653

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=96.84  E-value=0.00082  Score=58.18  Aligned_cols=88  Identities=10%  Similarity=0.073  Sum_probs=52.0

Q ss_pred             HHHHHh-hcccCeEEEc-cCCCHHHHHHHHHHhHHh--h--ccCc--eeECCCCCCC-------------CCh-------
Q 019491          243 LSLAKH-LHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPDGYR-------------KGT-------  294 (340)
Q Consensus       243 ~~la~~-L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~g~~-------------~~~-------  294 (340)
                      +.|.+. -.+.-+..|+ |.|||+|+.+.+.+.+..  .  +.+.  .|..++....             .+.       
T Consensus        25 v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d  104 (198)
T 1zof_A           25 FELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVAD  104 (198)
T ss_dssp             EETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEEC
T ss_pred             EEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEEC
Confidence            344444 2344477888 999999999888775532  1  1222  4555430000             000       


Q ss_pred             hhHhhhhhCCCc-----ccceeEE---CCE---EeeCCC----CHHHHHHH
Q 019491          295 KIAKACSDAKIE-----GFPTWVI---NGQ---VLSGEQ----DLSDLAKA  330 (340)
Q Consensus       295 k~~~lC~~~~I~-----GyPTw~i---nG~---~y~G~r----~l~~La~~  330 (340)
                      ...++.+++||.     ++||..+   +|+   ++.|..    +.++|.+.
T Consensus       105 ~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~  155 (198)
T 1zof_A          105 ITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRM  155 (198)
T ss_dssp             TTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHH
T ss_pred             CchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            024788999999     9998766   787   455653    56666654

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=96.84  E-value=0.0023  Score=52.45  Aligned_cols=77  Identities=9%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC----------------------------
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK----------------------------  304 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~----------------------------  304 (340)
                      .+++|+.||||+|++.+.++.+. .....++|...+.... ....++.++.|                            
T Consensus         6 ~i~iY~~~~C~~C~ka~~~L~~~-gi~y~~~di~~~~~~~-~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~~~   83 (120)
T 2kok_A            6 SVTIYGIKNCDTMKKARIWLEDH-GIDYTFHDYKKEGLDA-ETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVDAASA   83 (120)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH-TCCEEEEEHHHHCCCH-HHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCCHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHc-CCcEEEEeeeCCCCCH-HHHHHHHHHcChHhhccCCchhhHhcCchhhccCCHHHH
Confidence            37899999999999999999874 3334456665432111 11334455666                            


Q ss_pred             ---------CcccceeEECCEEeeCCCCHHHHHHHhC
Q 019491          305 ---------IEGFPTWVINGQVLSGEQDLSDLAKASG  332 (340)
Q Consensus       305 ---------I~GyPTw~inG~~y~G~r~l~~La~~sg  332 (340)
                               .-.-|..+.+++..-| ++.+++.++.|
T Consensus        84 ~~~l~~~p~likrPiv~~~~~~~vG-f~~~~~~~~l~  119 (120)
T 2kok_A           84 RELMLAQPSMVKRPVLERDGKLMVG-FKPAQYEAYFK  119 (120)
T ss_dssp             HHHHHHCGGGBCSSEEEETTEEEEC-CCHHHHHHHHC
T ss_pred             HHHHHhCcccEECCEEEECCEEEEe-CCHHHHHHHhc
Confidence                     3457877778877776 67788888876

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=96.74  E-value=0.0016  Score=55.80  Aligned_cols=33  Identities=9%  Similarity=-0.183  Sum_probs=24.0

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      .+.+++.-.+.-++.|+|.|||.|+++.+.+.+
T Consensus        41 ~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~   73 (185)
T 2gs3_A           41 MVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVD   73 (185)
T ss_dssp             EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHH
T ss_pred             EeeHHHcCCCEEEEEEecCCCCchHHHHHHHHH
Confidence            344555444555778999999999998877755

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=96.66  E-value=0.0016  Score=55.44  Aligned_cols=33  Identities=15%  Similarity=-0.053  Sum_probs=25.1

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~  275 (340)
                      +.+++.-.+.-++.|+|.|||+|+++.+.+.+.
T Consensus        31 v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l   63 (180)
T 3kij_A           31 VSLEKYKGKVSLVVNVASDCQLTDRNYLGLKEL   63 (180)
T ss_dssp             EEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHH
T ss_pred             ecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHH
Confidence            445555455667789999999999998887664

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=96.66  E-value=0.0012  Score=58.71  Aligned_cols=38  Identities=13%  Similarity=0.280  Sum_probs=26.4

Q ss_pred             ccCeEEEccCCCHHHHHHHHHH---hHHhh---c--cCceeECCCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMF---GSEAV---K--QLNYVECFPD  288 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lf---gk~A~---~--~l~yVeC~~~  288 (340)
                      +.-++.|++||||||+++.|.+   .+-+.   .  .+.+++.+.+
T Consensus       114 ~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          114 APQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            3457889999999999999987   54321   1  2446666544

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=96.60  E-value=0.0024  Score=51.95  Aligned_cols=75  Identities=15%  Similarity=0.271  Sum_probs=48.0

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC-----------------------------
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK-----------------------------  304 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~-----------------------------  304 (340)
                      +++|+-|+||+|++.+.++.+. .....++|...+.... ....++.++.|                             
T Consensus         2 i~iY~~~~C~~C~kak~~L~~~-gi~~~~~di~~~~~~~-~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~~~~   79 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDEH-KVAYDFHDYKAVGIDR-EHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAI   79 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-TCCEEEEEHHHHCCCH-HHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCceEEEeecCCCCCH-HHHHHHHHhCChHHhccCCcHhHHhcCccccccCCHHHHH
Confidence            6799999999999999999873 3334456665443111 11223344444                             


Q ss_pred             --------CcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          305 --------IEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       305 --------I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                              .-.-|..+.+|+..-| ++.+++.++.
T Consensus        80 ~~l~~~p~likrPiv~~~~~~~vG-f~~~~~~~~l  113 (114)
T 1rw1_A           80 ELMLAQPSMIKRPVLELGGRTLVG-FKPDAYAAAL  113 (114)
T ss_dssp             HHHHHCGGGBCSCEEECSSCEEES-CCHHHHHHHH
T ss_pred             HHHHhChhheeCcEEEECCEEEEe-CCHHHHHHHh
Confidence                    3457777667766666 6778887765

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=96.56  E-value=0.003  Score=52.64  Aligned_cols=77  Identities=9%  Similarity=0.119  Sum_probs=50.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC----------------------------
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----------------------------  305 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I----------------------------  305 (340)
                      +++|+.+|||+|++.+.++.+. .....++|...+.... ....++.++.|.                            
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~-gi~y~~~di~~~~~~~-~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~ls~~~~   80 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH-EIPFVERNIFSEPLSI-DEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDL   80 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-TCCEEEEETTTSCCCH-HHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCGGGSBHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-CCceEEEEccCCCccH-HHHHHHHHHcCCCHHHhhcCCchHHHhcCcccccCCHHHH
Confidence            6799999999999999999873 3334457776553221 112333332222                            


Q ss_pred             ----------cccceeEECCEEeeCCCCHHHHHHHhCC
Q 019491          306 ----------EGFPTWVINGQVLSGEQDLSDLAKASGF  333 (340)
Q Consensus       306 ----------~GyPTw~inG~~y~G~r~l~~La~~sg~  333 (340)
                                -..|..+.+|+..-| ++.+++.++.+.
T Consensus        81 ~~~l~~~p~likrPiv~~~~~~~vG-f~~~~~~~~l~~  117 (132)
T 1z3e_A           81 YRLINEHPGLLRRPIIIDEKRLQVG-YNEDEIRRFLPR  117 (132)
T ss_dssp             HHHHHHCGGGBCSCEEECSSCEEES-CCTTGGGGGSCC
T ss_pred             HHHHHhCccceeCCEEEECCEEEEc-CCHHHHHHHhCc
Confidence                      267887777777777 677888877754

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=96.52  E-value=0.0038  Score=54.32  Aligned_cols=88  Identities=7%  Similarity=0.028  Sum_probs=52.8

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh--h--ccCc--eeECCCC-----------------CCC----CC
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPD-----------------GYR----KG  293 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~-----------------g~~----~~  293 (340)
                      .+.|.+.-.+.-+.+|+ |.|||+|+.+.+.+.+.+  +  +.+.  .|.+++.                 +.+    .+
T Consensus        28 ~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D  107 (202)
T 1uul_A           28 KVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILAD  107 (202)
T ss_dssp             EEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEEC
T ss_pred             EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEEC
Confidence            44555554455577888 999999999988776532  1  1233  4454421                 000    00


Q ss_pred             hhhHhhhhhCCCc------ccceeEE---CCE---EeeC----CCCHHHHHHH
Q 019491          294 TKIAKACSDAKIE------GFPTWVI---NGQ---VLSG----EQDLSDLAKA  330 (340)
Q Consensus       294 ~k~~~lC~~~~I~------GyPTw~i---nG~---~y~G----~r~l~~La~~  330 (340)
                       ...++.+++||.      ++|+..+   +|+   ++.|    .++.++|.+.
T Consensus       108 -~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~  159 (202)
T 1uul_A          108 -KTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRL  159 (202)
T ss_dssp             -TTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             -CchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHH
Confidence             024678889999      9998665   675   3444    3456776554

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=96.41  E-value=0.0093  Score=53.07  Aligned_cols=72  Identities=13%  Similarity=0.050  Sum_probs=52.8

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc---cC--ceeECCCCCCCCChhhHhhhhhCCCc--ccceeEE----CCEEe---e
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI----NGQVL---S  319 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~---~l--~yVeC~~~g~~~~~k~~~lC~~~~I~--GyPTw~i----nG~~y---~  319 (340)
                      +.+|..+||+||++.++.|.+-|.+   ++  .+||++...      ...+.+.+|++  ++|++.|    ++++|   .
T Consensus       135 ~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~------~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~  208 (227)
T 4f9z_D          135 LLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKE------NGKVISFFKLKESQLPALAIYQTLDDEWDTLPT  208 (227)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGG------GHHHHHHTTCCGGGCSEEEEEESSSCCEEEETT
T ss_pred             EEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHh------HHHHHHHcCCCcccCCEEEEEECCCCccccCCc
Confidence            4567689999999999999875532   24  467775321      24678999998  8999988    33445   4


Q ss_pred             CCCCHHHHHHHh
Q 019491          320 GEQDLSDLAKAS  331 (340)
Q Consensus       320 G~r~l~~La~~s  331 (340)
                      |+.+.+.|.+|.
T Consensus       209 ~~~t~~~i~~Fv  220 (227)
T 4f9z_D          209 AEVSVEHVQNFC  220 (227)
T ss_dssp             CCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            788999999886

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=96.35  E-value=0.0049  Score=58.22  Aligned_cols=79  Identities=13%  Similarity=0.221  Sum_probs=51.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc-cC---ce----eE--CCCCCCCC---ChhhHhhhhhCCCccc--ceeEECCEE
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK-QL---NY----VE--CFPDGYRK---GTKIAKACSDAKIEGF--PTWVINGQV  317 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~-~l---~y----Ve--C~~~g~~~---~~k~~~lC~~~~I~Gy--PTw~inG~~  317 (340)
                      .+.+|..++||+|.+.|+++.+.+.+ .+   +|    +|  ...|...+   ...+.++.+++|.++.  |..+|||+.
T Consensus        45 ~VelyTs~gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~Ing~~  124 (270)
T 2axo_A           45 VVELFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAILNGRD  124 (270)
T ss_dssp             EEEEEECTTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEETTTE
T ss_pred             EEEEEeCCCCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEEECCEE
Confidence            37799999999999999999775321 12   22    22  11121111   0113346777899999  999999996


Q ss_pred             eeCCCCHHHHHHHh
Q 019491          318 LSGEQDLSDLAKAS  331 (340)
Q Consensus       318 y~G~r~l~~La~~s  331 (340)
                      .-|..+.++|.+..
T Consensus       125 ~v~G~d~~~l~~~l  138 (270)
T 2axo_A          125 HVKGADVRGIYDRL  138 (270)
T ss_dssp             EEETTCHHHHHHHH
T ss_pred             eecCCCHHHHHHHH
Confidence            55556778887655

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=96.31  E-value=0.0058  Score=54.13  Aligned_cols=32  Identities=9%  Similarity=-0.100  Sum_probs=23.1

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      +.|++.-.+.-++.|+|.|||.|++..+.+.+
T Consensus        40 v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~   71 (208)
T 2f8a_A           40 VSLGSLRGKVLLIENVASLGGTTVRDYTQMNE   71 (208)
T ss_dssp             EEGGGGTTSEEEEEEECSSSTTHHHHHHHHHH
T ss_pred             ccHHHcCCCEEEEEEECCCCccHHHHHHHHHH
Confidence            44555444555778999999999997776655

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=96.30  E-value=0.0056  Score=54.55  Aligned_cols=89  Identities=11%  Similarity=0.070  Sum_probs=53.8

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh--h--ccCc--eeECCCCC--------C-------CCC-----h
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPDG--------Y-------RKG-----T  294 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~g--------~-------~~~-----~  294 (340)
                      .+.|.+.-.+.-+.+|+ |.|||+|+.+.+.|.+.+  +  +.+.  .|.+++..        .       +-.     .
T Consensus        48 ~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D  127 (220)
T 1zye_A           48 EISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSD  127 (220)
T ss_dssp             EEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEEC
T ss_pred             EEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEEC
Confidence            34455554555677888 999999999988776532  1  1222  45544210        0       000     0


Q ss_pred             hhHhhhhhCCCc------ccceeEE---CCE---EeeCC----CCHHHHHHH
Q 019491          295 KIAKACSDAKIE------GFPTWVI---NGQ---VLSGE----QDLSDLAKA  330 (340)
Q Consensus       295 k~~~lC~~~~I~------GyPTw~i---nG~---~y~G~----r~l~~La~~  330 (340)
                      ...++.+++||.      ++|+.++   +|+   ++.|.    ++.++|.+.
T Consensus       128 ~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~  179 (220)
T 1zye_A          128 LTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRL  179 (220)
T ss_dssp             TTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             CcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            024788999999      9999776   676   33443    566776654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=95.95  E-value=0.0062  Score=52.30  Aligned_cols=89  Identities=7%  Similarity=0.056  Sum_probs=51.6

Q ss_pred             HHHHHHh-hcccCeEEEc-cCCCHHHHHHHHHHhHHh--h--ccCc--eeECCCCC--------CC-----CCh------
Q 019491          242 ALSLAKH-LHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPDG--------YR-----KGT------  294 (340)
Q Consensus       242 ~~~la~~-L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~g--------~~-----~~~------  294 (340)
                      .+.|++. -.+.-+.+|+ |.|||+|..+.+.+.+.+  +  +.+.  .|..+...        .+     .+.      
T Consensus        22 ~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~  101 (192)
T 2h01_A           22 EVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLIS  101 (192)
T ss_dssp             EEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEE
T ss_pred             EEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEE
Confidence            3445554 2344567888 999999999888775532  1  1222  34443200        00     000      


Q ss_pred             -hhHhhhhhCCCc-----ccceeEE---CCE---EeeCC----CCHHHHHHH
Q 019491          295 -KIAKACSDAKIE-----GFPTWVI---NGQ---VLSGE----QDLSDLAKA  330 (340)
Q Consensus       295 -k~~~lC~~~~I~-----GyPTw~i---nG~---~y~G~----r~l~~La~~  330 (340)
                       ...++.+++||.     ++|+..+   +|+   ++.|.    ++.++|.+.
T Consensus       102 D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~  153 (192)
T 2h01_A          102 DISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRL  153 (192)
T ss_dssp             CTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHH
T ss_pred             CCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHH
Confidence             024688899999     8999776   676   34453    456666543

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=95.88  E-value=0.019  Score=51.06  Aligned_cols=90  Identities=8%  Similarity=0.057  Sum_probs=53.6

Q ss_pred             hHHHHHHhhcccCeEEEcc-CCCHHHHHHHHHHhHHh--h--ccCc--eeECCCCCCCC-------------Ch------
Q 019491          241 FALSLAKHLHAIGAKMYGA-FWCSHCLEQKQMFGSEA--V--KQLN--YVECFPDGYRK-------------GT------  294 (340)
Q Consensus       241 ~~~~la~~L~~~g~~~YgA-~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~g~~~-------------~~------  294 (340)
                      ..+.|++.-.+.-++.|+| .|||+|..+.+.+.+..  +  +.+.  .|.+++.....             +.      
T Consensus        60 ~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (222)
T 3ztl_A           60 KEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLA  139 (222)
T ss_dssp             EEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEE
T ss_pred             cEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEe
Confidence            3455666555566778887 99999999988776532  1  1122  45554311000             00      


Q ss_pred             -hhHhhhhhCCCc------ccceeEE---CCE---EeeCC----CCHHHHHHH
Q 019491          295 -KIAKACSDAKIE------GFPTWVI---NGQ---VLSGE----QDLSDLAKA  330 (340)
Q Consensus       295 -k~~~lC~~~~I~------GyPTw~i---nG~---~y~G~----r~l~~La~~  330 (340)
                       ...++.++++|.      ++|+.++   +|+   ++.|.    +.++++.+.
T Consensus       140 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~  192 (222)
T 3ztl_A          140 DRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRL  192 (222)
T ss_dssp             CSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHH
T ss_pred             CCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence             023678889999      8999766   676   34454    445665543

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=95.83  E-value=0.011  Score=49.03  Aligned_cols=32  Identities=13%  Similarity=0.070  Sum_probs=21.7

Q ss_pred             HHHHHhhcccCeEEEccCCCH-HHHHHHHHHhH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCS-HCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCp-HC~~qk~lfgk  274 (340)
                      +.|++.-.+.-++.|+|.||| +|+.+.+.+.+
T Consensus        26 ~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~   58 (174)
T 1xzo_A           26 VSLESLKGEVWLADFIFTNCETICPPMTAHMTD   58 (174)
T ss_dssp             EETGGGTTCCEEEEEECSCCSSCCCSHHHHHHH
T ss_pred             EehhhcCCCEEEEEEEcCCCcchhHHHHHHHHH
Confidence            445554344457788999999 99877665544

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=95.72  E-value=0.0067  Score=50.81  Aligned_cols=69  Identities=7%  Similarity=-0.033  Sum_probs=45.1

Q ss_pred             eEEEccCCCHHH------HHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhC--------CCcccceeEECCEEee
Q 019491          254 AKMYGAFWCSHC------LEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA--------KIEGFPTWVINGQVLS  319 (340)
Q Consensus       254 ~~~YgA~WCpHC------~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~--------~I~GyPTw~inG~~y~  319 (340)
                      +++|..+.||.|      ++.|.++...   .|+|-|.+-+....  .+.+.-++.        |.+..|..+|||+-.-
T Consensus         2 V~vYtt~~c~~c~~kk~c~~aK~lL~~k---gV~feEidI~~d~~--~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iG   76 (121)
T 1u6t_A            2 IRVYIASSSGSTAIKKKQQDVLGFLEAN---KIGFEEKDIAANEE--NRKWMRENVPENSRPATGYPLPPQIFNESQYRG   76 (121)
T ss_dssp             EEEEECTTCSCHHHHHHHHHHHHHHHHT---TCCEEEEECTTCHH--HHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEE
T ss_pred             EEEEecCCCCCccchHHHHHHHHHHHHC---CCceEEEECCCCHH--HHHHHHHhccccccccCCCcCCCEEEECCEEEe
Confidence            689999999999      6778888663   45554444332111  134555555        8889999999997655


Q ss_pred             CCCCHHHH
Q 019491          320 GEQDLSDL  327 (340)
Q Consensus       320 G~r~l~~L  327 (340)
                      |-.++.+|
T Consensus        77 G~Dd~~~l   84 (121)
T 1u6t_A           77 DYDAFFEA   84 (121)
T ss_dssp             EHHHHHHH
T ss_pred             chHHHHHh
Confidence            54444443

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=95.71  E-value=0.024  Score=46.77  Aligned_cols=33  Identities=9%  Similarity=-0.069  Sum_probs=23.1

Q ss_pred             HHHHHHhhcccCeEEEcc-CCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGA-FWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA-~WCpHC~~qk~lfgk  274 (340)
                      .+.+++...+.-+.+|++ .|||+|..+.+.+.+
T Consensus        27 ~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~   60 (163)
T 3gkn_A           27 QTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNA   60 (163)
T ss_dssp             EECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHH
T ss_pred             EEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHH
Confidence            344555444545667887 999999999877655

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=95.69  E-value=0.0078  Score=50.53  Aligned_cols=32  Identities=13%  Similarity=0.164  Sum_probs=16.9

Q ss_pred             HHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          243 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      +.|+++-.+.-+..|+ |.|||.|.++.+.|.+
T Consensus        23 ~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~   55 (157)
T 4g2e_A           23 VKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRD   55 (157)
T ss_dssp             EEGGGGTTSCEEEEECSCTTCCC------CCSC
T ss_pred             EeHHHHCCCeEEEEecCCCCCCccccchhhccc
Confidence            4555554454455665 9999999999876654

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=95.67  E-value=0.038  Score=45.67  Aligned_cols=81  Identities=10%  Similarity=-0.013  Sum_probs=45.1

Q ss_pred             HHHHHHhhcc--cCeEEE-ccCCCHHHHHHHHHHhHHh--hc---cCceeECCCCCCC--------------CChhhHhh
Q 019491          242 ALSLAKHLHA--IGAKMY-GAFWCSHCLEQKQMFGSEA--VK---QLNYVECFPDGYR--------------KGTKIAKA  299 (340)
Q Consensus       242 ~~~la~~L~~--~g~~~Y-gA~WCpHC~~qk~lfgk~A--~~---~l~yVeC~~~g~~--------------~~~k~~~l  299 (340)
                      .+.|.+...+  .-+.+| .|.|||+|..+.+.+.+..  .+   .+-.|.++.....              .+ ...++
T Consensus        25 ~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D-~~~~~  103 (159)
T 2a4v_A           25 SISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSD-PKREF  103 (159)
T ss_dssp             EEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEEC-TTCHH
T ss_pred             EEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEEC-CccHH
Confidence            3455555444  234454 4999999999887765521  11   2223443311000              00 02367


Q ss_pred             hhhCCCcccc-------eeEE-CCE---EeeCCCC
Q 019491          300 CSDAKIEGFP-------TWVI-NGQ---VLSGEQD  323 (340)
Q Consensus       300 C~~~~I~GyP-------Tw~i-nG~---~y~G~r~  323 (340)
                      .+++|+.+.|       |++| ||+   ++.|...
T Consensus       104 ~~~~gv~~~p~~g~~~~~~li~~G~i~~~~~g~~~  138 (159)
T 2a4v_A          104 IGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISP  138 (159)
T ss_dssp             HHHHTCBSSSSSCBCCEEEEEETTEEEEEEESCCH
T ss_pred             HHHhCCcccccCCccceEEEEcCCEEEEEEccCCc
Confidence            8889999998       5656 776   4666644

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=95.64  E-value=0.022  Score=49.49  Aligned_cols=32  Identities=16%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             HHHHHhhcccCeEEEccCCCHH-HHHHHHHHhH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSH-CLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpH-C~~qk~lfgk  274 (340)
                      +.+++.-.+.-++.|+|.|||+ |..+.+.+.+
T Consensus        34 v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~   66 (200)
T 2b7k_A           34 FTEKNLLGKFSIIYFGFSNCPDICPDELDKLGL   66 (200)
T ss_dssp             EEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHH
T ss_pred             EeHHHcCCCEEEEEEECCCCcchhHHHHHHHHH
Confidence            3444443445577899999997 9998877655

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=95.59  E-value=0.012  Score=48.97  Aligned_cols=75  Identities=16%  Similarity=0.038  Sum_probs=44.9

Q ss_pred             HHHHHHhhcccCeEEEccCC-CHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCC------Ch---------hhHhhhh
Q 019491          242 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRK------GT---------KIAKACS  301 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~W-CpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~------~~---------k~~~lC~  301 (340)
                      .+.+++.-.+.-+..|+|.| ||+|+++.+.+.+.+.  +.+.  .|..+.....+      +.         +..++.+
T Consensus        36 ~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  115 (167)
T 2jsy_A           36 EKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGE  115 (167)
T ss_dssp             EEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHH
T ss_pred             EeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHH
Confidence            34555554555677889999 9999999888766432  2333  34443211000      00         1246778


Q ss_pred             hCCCcc------cceeEE---CCE
Q 019491          302 DAKIEG------FPTWVI---NGQ  316 (340)
Q Consensus       302 ~~~I~G------yPTw~i---nG~  316 (340)
                      +++|.+      +|+..+   +|+
T Consensus       116 ~~~v~~~~~g~~~p~~~lid~~G~  139 (167)
T 2jsy_A          116 AFGVYIKELRLLARSVFVLDENGK  139 (167)
T ss_dssp             HTTCBBTTTCSBCCEEEEECTTSC
T ss_pred             HhCCccccCCceeeEEEEEcCCCc
Confidence            889887      487655   675

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=95.55  E-value=0.022  Score=50.42  Aligned_cols=89  Identities=8%  Similarity=0.097  Sum_probs=51.5

Q ss_pred             HHHHHHh-hcccCeEEEc-cCCCHHHHHHHHHHhHHh--h--ccCc--eeECCCCCC-------CC------C-------
Q 019491          242 ALSLAKH-LHAIGAKMYG-AFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPDGY-------RK------G-------  293 (340)
Q Consensus       242 ~~~la~~-L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~--~~l~--yVeC~~~g~-------~~------~-------  293 (340)
                      .+.|.+. -.+.-+++|+ |.|||+|+.+.+.|.+.+  +  +.+.  .|..+....       .+      +       
T Consensus        43 ~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~  122 (213)
T 2i81_A           43 EVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLS  122 (213)
T ss_dssp             EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEE
T ss_pred             EEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEE
Confidence            4556655 3344577888 999999999988776532  1  1222  333332000       00      0       


Q ss_pred             hhhHhhhhhCCCc-----ccceeEE---CCE---EeeCC----CCHHHHHHH
Q 019491          294 TKIAKACSDAKIE-----GFPTWVI---NGQ---VLSGE----QDLSDLAKA  330 (340)
Q Consensus       294 ~k~~~lC~~~~I~-----GyPTw~i---nG~---~y~G~----r~l~~La~~  330 (340)
                      ....++.+++||.     ..|+.++   +|+   ++.|.    ++.++|.+.
T Consensus       123 D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~  174 (213)
T 2i81_A          123 DITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRI  174 (213)
T ss_dssp             CTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             CCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            0024788999999     8998665   675   33342    457776654

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=95.31  E-value=0.0073  Score=52.52  Aligned_cols=21  Identities=19%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             cCeEEEccCCCHHHHHHHHHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMF  272 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lf  272 (340)
                      .-+++|+++|||||+++.+.+
T Consensus        16 ~~vvef~d~~Cp~C~~~~~~~   36 (189)
T 3l9v_A           16 PAVVEFFSFYCPPCYAFSQTM   36 (189)
T ss_dssp             CSEEEEECTTCHHHHHHHHTS
T ss_pred             CEEEEEECCCChhHHHHhHhc
Confidence            348899999999999998875

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=95.23  E-value=0.016  Score=49.53  Aligned_cols=37  Identities=27%  Similarity=0.273  Sum_probs=33.0

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhCC
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF  333 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg~  333 (340)
                      .++.++.||+|.||.+|||+.+.|.+++++|.++...
T Consensus       139 ~~~a~~~gv~GtPt~vvnG~~~~G~~~~~~l~~~i~~  175 (186)
T 3bci_A          139 KKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKD  175 (186)
T ss_dssp             HHHHHHTTCCSSSEEEETTEECSCTTCHHHHHHHHHC
T ss_pred             HHHHHHcCCCCCCeEEECCEEcCCCCCHHHHHHHHHH
Confidence            4678889999999999999999999999999987654

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=94.92  E-value=0.011  Score=51.40  Aligned_cols=33  Identities=27%  Similarity=0.539  Sum_probs=27.2

Q ss_pred             hhhhCCCcccceeEECCEE-e--eCCCCHHHHHHHh
Q 019491          299 ACSDAKIEGFPTWVINGQV-L--SGEQDLSDLAKAS  331 (340)
Q Consensus       299 lC~~~~I~GyPTw~inG~~-y--~G~r~l~~La~~s  331 (340)
                      ..++.||+|.||++|||+. .  +|.++.+++.+..
T Consensus       144 ~a~~~gv~GtPtfvvng~~~v~~~Ga~~~e~~~~~i  179 (185)
T 3feu_A          144 LSEKSGISSVPTFVVNGKYNVLIGGHDDPKQIADTI  179 (185)
T ss_dssp             HHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHHH
T ss_pred             HHHHcCCCccCEEEECCEEEEecCCCCCHHHHHHHH
Confidence            3456788999999999983 3  8999999998765

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=94.79  E-value=0.024  Score=50.01  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .++.++.||+|.||++|||+.+.|.++.++|.+..
T Consensus       153 ~~~a~~~gV~gtPtfvvnG~~~~G~~~~e~l~~~i  187 (202)
T 3gha_A          153 SDLNQKMNIQATPTIYVNDKVIKNFADYDEIKETI  187 (202)
T ss_dssp             HHHHHHTTCCSSCEEEETTEECSCTTCHHHHHHHH
T ss_pred             HHHHHHcCCCcCCEEEECCEEecCCCCHHHHHHHH
Confidence            35678899999999999999999999999998764

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=94.50  E-value=0.026  Score=50.36  Aligned_cols=35  Identities=23%  Similarity=0.533  Sum_probs=30.9

Q ss_pred             Hhhh-hhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          297 AKAC-SDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC-~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .+.. ++.||+|.||++|||+.++|.++.++|.+..
T Consensus       157 ~~~a~~~~GV~GtPtfvvng~~~~G~~~~e~l~~~i  192 (205)
T 3gmf_A          157 TDEAINQYNVSGTPSFMIDGILLAGTHDWASLRPQI  192 (205)
T ss_dssp             HHHHHHHHCCCSSSEEEETTEECTTCCSHHHHHHHH
T ss_pred             HHHHHHHcCCccCCEEEECCEEEeCCCCHHHHHHHH
Confidence            3456 7889999999999999999999999998764

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=94.16  E-value=0.03  Score=47.83  Aligned_cols=66  Identities=3%  Similarity=0.005  Sum_probs=36.9

Q ss_pred             hHHHHHHhhcc--cCeEEEccCCCHHHHHH-HHHHhHHh--h--ccCc-eeECCCCCCCCChhhHhhhhhCCCc-ccc
Q 019491          241 FALSLAKHLHA--IGAKMYGAFWCSHCLEQ-KQMFGSEA--V--KQLN-YVECFPDGYRKGTKIAKACSDAKIE-GFP  309 (340)
Q Consensus       241 ~~~~la~~L~~--~g~~~YgA~WCpHC~~q-k~lfgk~A--~--~~l~-yVeC~~~g~~~~~k~~~lC~~~~I~-GyP  309 (340)
                      ..+.|++.++.  .-+.+|.|.|||.|.++ .+.|.+..  +  +.+. .|-...|..   ...++.+++++++ .||
T Consensus        33 ~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~---~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           33 STTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDP---YTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             CCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCH---HHHHHHHHHTTCTTTSE
T ss_pred             ceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCH---HHHHHHHHHhCCCCceE
Confidence            44566665443  33457899999999998 77775422  1  2244 333333311   1245556666663 555

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=94.15  E-value=0.036  Score=48.54  Aligned_cols=38  Identities=13%  Similarity=0.149  Sum_probs=33.2

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhCCC
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGFP  334 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg~~  334 (340)
                      .+..++.||.|.||+++||+.+.|.+.++.|.++.+-.
T Consensus       163 ~~~a~~~Gv~GvPtfvv~g~~~~G~~~~~~l~~~l~~~  200 (202)
T 3fz5_A          163 GEDAVARGIFGSPFFLVDDEPFWGWDRMEMMAEWIRTG  200 (202)
T ss_dssp             HHHHHHTTCCSSSEEEETTEEEESGGGHHHHHHHHHTC
T ss_pred             HHHHHHCCCCcCCEEEECCEEEecCCCHHHHHHHHhcc
Confidence            45567899999999999999999999999999887543

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=94.07  E-value=0.035  Score=46.36  Aligned_cols=34  Identities=18%  Similarity=0.117  Sum_probs=23.1

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHH
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~  275 (340)
                      .+.|++.-.+.-+..|+ +.|||+|..+.+.+.+.
T Consensus        38 ~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~   72 (166)
T 3p7x_A           38 QVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSD   72 (166)
T ss_dssp             EEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHH
T ss_pred             EEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHH
Confidence            34555554444455565 88999999998877653

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=94.06  E-value=0.078  Score=48.92  Aligned_cols=89  Identities=9%  Similarity=-0.029  Sum_probs=52.0

Q ss_pred             HHH-HHhh-ccc-C-eEEEccCCCHHHHHHHHHHhHHh--hc----cCceeECCCCCCC------------CC-------
Q 019491          243 LSL-AKHL-HAI-G-AKMYGAFWCSHCLEQKQMFGSEA--VK----QLNYVECFPDGYR------------KG-------  293 (340)
Q Consensus       243 ~~l-a~~L-~~~-g-~~~YgA~WCpHC~~qk~lfgk~A--~~----~l~yVeC~~~g~~------------~~-------  293 (340)
                      +.| .+.+ +.. . +.+|.|.|||.|..+.+.|.+.+  ++    ++-.|.++.....            .+       
T Consensus        23 v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~  102 (249)
T 3a2v_A           23 IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIA  102 (249)
T ss_dssp             EEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEE
T ss_pred             EecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEE
Confidence            566 6664 333 2 33678999999999988776532  11    1224555431100            00       


Q ss_pred             hhhHhhhhhCCCc-------ccceeEE---CCE---EeeCC----CCHHHHHHHh
Q 019491          294 TKIAKACSDAKIE-------GFPTWVI---NGQ---VLSGE----QDLSDLAKAS  331 (340)
Q Consensus       294 ~k~~~lC~~~~I~-------GyPTw~i---nG~---~y~G~----r~l~~La~~s  331 (340)
                      ....++.+++||.       ++|+.+|   +|+   .+.|.    |+.++|.+..
T Consensus       103 D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I  157 (249)
T 3a2v_A          103 DPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIV  157 (249)
T ss_dssp             CTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred             CCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHH
Confidence            0024678888987       8997555   675   23333    6888887654

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=94.02  E-value=0.04  Score=47.95  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .+..++.||.|.||++|||+.+.|.++++.|.+..
T Consensus       157 ~~~a~~~Gv~G~Ptfvi~g~~~~G~~~~~~l~~~l  191 (203)
T 2imf_A          157 THAAIERKVFGVPTMFLGDEMWWGNDRLFMLESAM  191 (203)
T ss_dssp             HHHHHHTTCCSSSEEEETTEEEESGGGHHHHHHHH
T ss_pred             HHHHHHCCCCcCCEEEECCEEEECCCCHHHHHHHH
Confidence            35577899999999999999999999999998765

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=93.94  E-value=0.044  Score=47.82  Aligned_cols=35  Identities=31%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             hhhhhCCCcccceeEECCEEe---eCCCCHHHHHHHhC
Q 019491          298 KACSDAKIEGFPTWVINGQVL---SGEQDLSDLAKASG  332 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~inG~~y---~G~r~l~~La~~sg  332 (340)
                      +..++.||+|.||.+|||+.+   +|.++.|+++++.|
T Consensus       145 ~~a~~~GV~gtPtf~ing~~~~~~s~~~~~e~w~~~l~  182 (182)
T 3gn3_A          145 KYARQNGIHVSPTFMINGLVQPGMSSGDPVSKWVSDIG  182 (182)
T ss_dssp             HHHHHHTCCSSSEEEETTEECTTCCTTSCHHHHHHHHC
T ss_pred             HHHHHCCCCccCEEEECCEEccCCCCCCCHHHHHHHhC
Confidence            557779999999999999985   67899999999876

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=93.39  E-value=0.071  Score=45.06  Aligned_cols=33  Identities=9%  Similarity=-0.062  Sum_probs=23.3

Q ss_pred             HHHHHhhcccCeEEEccCC-CHHHHHHHHHHhHH
Q 019491          243 LSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE  275 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~W-CpHC~~qk~lfgk~  275 (340)
                      +.+.+.-.+.-++.|+|.| ||+|+++.+.+.+.
T Consensus        37 v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l   70 (175)
T 1xvq_A           37 ISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER   70 (175)
T ss_dssp             EEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH
T ss_pred             EeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHH
Confidence            3444443444577888888 99999998887664

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=93.33  E-value=0.16  Score=44.83  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=24.1

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      .+.|++.-.+.-+.+|+ |.|||+|..+.+.|.+
T Consensus        40 ~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~   73 (211)
T 2pn8_A           40 ELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGD   73 (211)
T ss_dssp             EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHH
T ss_pred             EEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH
Confidence            44556554555577888 9999999998776654

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=93.22  E-value=0.074  Score=44.50  Aligned_cols=24  Identities=8%  Similarity=0.160  Sum_probs=17.7

Q ss_pred             ccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          251 AIGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       251 ~~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      +.-+..|+ +.|||+|.++.+.+.+
T Consensus        48 k~vvl~f~~~~~C~~C~~~~~~l~~   72 (171)
T 2yzh_A           48 VVQVIITVPSLDTPVCETETKKFNE   72 (171)
T ss_dssp             SEEEEEECSCTTSHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCchHHHHHHHHH
Confidence            33355565 8999999999877765

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=93.13  E-value=0.059  Score=44.83  Aligned_cols=34  Identities=21%  Similarity=0.075  Sum_probs=22.8

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHH
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~  275 (340)
                      .+.+++.-.+.-+..|+ +.|||+|.++.+.+.+.
T Consensus        34 ~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~   68 (163)
T 1psq_A           34 KKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEE   68 (163)
T ss_dssp             EEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHH
T ss_pred             EeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHH
Confidence            34555544444466676 49999999988777653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=93.04  E-value=0.091  Score=46.72  Aligned_cols=33  Identities=3%  Similarity=0.072  Sum_probs=21.8

Q ss_pred             HHHHHHhhc-ccCeEEEc-cCCCHHHH-HHHHHHhH
Q 019491          242 ALSLAKHLH-AIGAKMYG-AFWCSHCL-EQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~-~~g~~~Yg-A~WCpHC~-~qk~lfgk  274 (340)
                      .+.|++.++ +.-+..|+ |.|||+|. ++.+.|.+
T Consensus        24 ~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~   59 (241)
T 1nm3_A           24 DVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNE   59 (241)
T ss_dssp             EEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHH
T ss_pred             eecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHH
Confidence            456666343 33355565 99999999 77776654

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=93.00  E-value=0.19  Score=44.98  Aligned_cols=32  Identities=13%  Similarity=0.033  Sum_probs=23.2

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      .+.|++.-.+.-++.|+|.|||.|. +.+.+.+
T Consensus        48 ~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~   79 (215)
T 2i3y_A           48 YVSFKQYVGKHILFVNVATYCGLTA-QYPELNA   79 (215)
T ss_dssp             EEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHH
T ss_pred             EEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHH
Confidence            4566666556667899999999998 5555543

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=92.92  E-value=0.11  Score=42.40  Aligned_cols=35  Identities=6%  Similarity=0.166  Sum_probs=27.5

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG  289 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g  289 (340)
                      +++|+-|+||+|++.+.++.+. .....++|...++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-gi~~~~~di~~~~   36 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH-DVVFQEHNIMTSP   36 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-TCCEEEEETTTSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-CCCeEEEecccCC
Confidence            5799999999999999999873 3345567776654

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=92.79  E-value=0.087  Score=44.03  Aligned_cols=34  Identities=9%  Similarity=-0.020  Sum_probs=21.4

Q ss_pred             hHHHHHHhhc-ccCeEEEc-cCCCHHHH-HHHHHHhH
Q 019491          241 FALSLAKHLH-AIGAKMYG-AFWCSHCL-EQKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~-~~g~~~Yg-A~WCpHC~-~qk~lfgk  274 (340)
                      ..+.|++.++ +.-+..|+ |.|||+|. ++.+.|.+
T Consensus        25 ~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~   61 (162)
T 1tp9_A           25 QEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIE   61 (162)
T ss_dssp             EEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHH
T ss_pred             eeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHH
Confidence            3445555333 33455566 89999999 67666654

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=92.74  E-value=0.14  Score=42.12  Aligned_cols=51  Identities=12%  Similarity=0.111  Sum_probs=34.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI  305 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I  305 (340)
                      -+++|+-|+||.|++.+.++.+. .....++|-..++... ....++.++.|+
T Consensus         4 Mi~iY~~~~C~~c~ka~~~L~~~-gi~~~~~di~~~~~~~-~eL~~~l~~~g~   54 (120)
T 3fz4_A            4 MLTFYEYPKCSTCRRAKAELDDL-AWDYDAIDIKKNPPAA-SLIRNWLENSGL   54 (120)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHHH-TCCEEEEETTTSCCCH-HHHHHHHHHSCC
T ss_pred             eEEEEeCCCChHHHHHHHHHHHc-CCceEEEEeccCchhH-HHHHHHHHHcCC
Confidence            37899999999999999999874 4445567776654322 123445555543

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=92.39  E-value=0.12  Score=43.95  Aligned_cols=34  Identities=6%  Similarity=0.025  Sum_probs=21.6

Q ss_pred             hHHHHHHhhcc-cCeEE-EccCCCHHHHH-HHHHHhH
Q 019491          241 FALSLAKHLHA-IGAKM-YGAFWCSHCLE-QKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~~-~g~~~-YgA~WCpHC~~-qk~lfgk  274 (340)
                      ..+.|++.++. .-+.+ |.|.|||.|.+ +.+.|.+
T Consensus        21 ~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~   57 (167)
T 2wfc_A           21 DKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVE   57 (167)
T ss_dssp             CEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHH
T ss_pred             cEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHH
Confidence            34556665333 23344 45999999999 7776654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=92.20  E-value=0.3  Score=43.19  Aligned_cols=69  Identities=13%  Similarity=0.083  Sum_probs=48.1

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C--C--EEeeC--
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N--G--QVLSG--  320 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n--G--~~y~G--  320 (340)
                      +.-++.|+++||   .+..+.|.+.|..  .+.+.- +.+        .++|++++|++ ||..+  +  .  ..|.|  
T Consensus        28 ~v~vVgff~~~~---~~~~~~f~~~A~~l~~~~F~~-t~~--------~~v~~~~~v~~-p~i~lfk~~~~~~~~~~~~~   94 (227)
T 4f9z_D           28 EVAVIGFFQDLE---IPAVPILHSMVQKFPGVSFGI-STD--------SEVLTHYNITG-NTICLFRLVDNEQLNLEDED   94 (227)
T ss_dssp             SEEEEEECSCSC---STHHHHHHHHTTTCTTSEEEE-ECC--------HHHHHHTTCCS-SEEEEEETTTTEEEEECHHH
T ss_pred             CeEEEEEecCCC---chhHHHHHHHHHhCCCceEEE-ECC--------HHHHHHcCCCC-CeEEEEEecCcccccccccc
Confidence            444667889984   6888899886532  222222 212        58999999999 99876  2  2  25884  


Q ss_pred             --CCCHHHHHHHhC
Q 019491          321 --EQDLSDLAKASG  332 (340)
Q Consensus       321 --~r~l~~La~~sg  332 (340)
                        .++.++|.+|..
T Consensus        95 ~g~~~~~~l~~fi~  108 (227)
T 4f9z_D           95 IESIDATKLSRFIE  108 (227)
T ss_dssp             HHTCCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHH
Confidence              799999999874

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.19  E-value=0.26  Score=43.21  Aligned_cols=97  Identities=16%  Similarity=0.058  Sum_probs=59.7

Q ss_pred             cCCCchhHHHHH----HhhcccCeEEEccCCCHHHHHHH-HHHhHHhhcc-C--c--eeECCCCCC-CCChh--------
Q 019491          235 TTSSSPFALSLA----KHLHAIGAKMYGAFWCSHCLEQK-QMFGSEAVKQ-L--N--YVECFPDGY-RKGTK--------  295 (340)
Q Consensus       235 tt~S~~~~~~la----~~L~~~g~~~YgA~WCpHC~~qk-~lfgk~A~~~-l--~--yVeC~~~g~-~~~~k--------  295 (340)
                      -..+=..+++.|    +.-.+.-+++...+||+.|+.+. +.|..+...+ |  +  ..-|+-+.. ++..-        
T Consensus        36 ~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~  115 (178)
T 2ec4_A           36 FIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHF  115 (178)
T ss_dssp             CCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHT
T ss_pred             eeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhh
Confidence            333445667777    66666778899999999999996 5676554321 1  1  223332211 10000        


Q ss_pred             hHhhh---hhCCCcccceeEE---CC------EEeeCCCCHHHHHHHh
Q 019491          296 IAKAC---SDAKIEGFPTWVI---NG------QVLSGEQDLSDLAKAS  331 (340)
Q Consensus       296 ~~~lC---~~~~I~GyPTw~i---nG------~~y~G~r~l~~La~~s  331 (340)
                      ..+++   +..++++||+..+   ++      .+.+|..++++|.+..
T Consensus       116 g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L  163 (178)
T 2ec4_A          116 GSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRL  163 (178)
T ss_dssp             CHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHH
Confidence            01334   3489999999776   22      2689999999987653

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=91.80  E-value=0.042  Score=45.99  Aligned_cols=33  Identities=9%  Similarity=0.028  Sum_probs=22.2

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      .+.|++.-.+.-+..|+ +.|||+|.++.+.+.+
T Consensus        35 ~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~   68 (165)
T 1q98_A           35 DVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQ   68 (165)
T ss_dssp             EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHH
T ss_pred             EEehHHhCCCeEEEEEECCCCCCccHHHHHHHHH
Confidence            34555544444455666 8999999988777655

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=91.62  E-value=0.2  Score=41.12  Aligned_cols=51  Identities=10%  Similarity=0.020  Sum_probs=35.2

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI  305 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I  305 (340)
                      -+++|+-|+||.|++.+.++.+. .....++|-..++... ....++.++.|.
T Consensus         5 ~i~iY~~p~C~~c~ka~~~L~~~-gi~~~~~di~~~~~~~-~eL~~~l~~~g~   55 (120)
T 3gkx_A            5 KTLFLQYPACSTCQKAKKWLIEN-NIEYTNRLIVDDNPTV-EELKAWIPLSGL   55 (120)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHT-TCCCEEEETTTTCCCH-HHHHHHHHHHTS
T ss_pred             EEEEEECCCChHHHHHHHHHHHc-CCceEEEecccCcCCH-HHHHHHHHHcCC
Confidence            47899999999999999999873 4456678887664322 123445555554

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=91.31  E-value=0.28  Score=43.72  Aligned_cols=33  Identities=9%  Similarity=0.102  Sum_probs=23.4

Q ss_pred             HHHHHHh-hcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKH-LHAIGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~-L~~~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      .+.|++. -.+.-+..|+ |.|||.|..+.+.+.+
T Consensus        47 ~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~   81 (221)
T 2c0d_A           47 NVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNK   81 (221)
T ss_dssp             EEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHH
T ss_pred             EEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHH
Confidence            4555555 3444577888 9999999998776654

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=91.31  E-value=0.09  Score=45.89  Aligned_cols=22  Identities=18%  Similarity=0.599  Sum_probs=18.4

Q ss_pred             ccCeEEEccCCCHHHHHHHHHH
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMF  272 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lf  272 (340)
                      ++-+++|+.+|||||++..+.+
T Consensus        22 ~~~vvef~d~~Cp~C~~~~~~l   43 (191)
T 3l9s_A           22 EPQVLEFFSFYCPHCYQFEEVL   43 (191)
T ss_dssp             SSCEEEEECTTCHHHHHHHHTS
T ss_pred             CCeEEEEECCCChhHHHhChhc
Confidence            3458899999999999998753

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=91.29  E-value=0.16  Score=45.97  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             HhhhhhCCCcccceeEECCE-EeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~La~~s  331 (340)
                      .+..++.||+|.||++|||+ .++|.++.+.|.+..
T Consensus       173 ~~~a~~~Gv~GvPtfvv~g~~~v~Ga~~~e~~~~~i  208 (239)
T 3gl5_A          173 EREAAQLGATGVPFFVLDRAYGVSGAQPAEVFTQAL  208 (239)
T ss_dssp             HHHHHHTTCCSSSEEEETTTEEEESSCCHHHHHHHH
T ss_pred             HHHHHHCCCCeeCeEEECCcEeecCCCCHHHHHHHH
Confidence            34567899999999999997 789999999987764

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=91.22  E-value=0.2  Score=41.15  Aligned_cols=51  Identities=12%  Similarity=0.079  Sum_probs=35.2

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI  305 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I  305 (340)
                      .+++|+-|+||.|++.+.++.+. .....++|...++... ....++.++.|+
T Consensus         6 ~i~iY~~p~C~~c~ka~~~L~~~-gi~~~~~di~~~~~~~-~eL~~~l~~~g~   56 (121)
T 3rdw_A            6 DVTIYHNPRCSKSRETLALVEQQ-GITPQVVLYLETPPSV-DKLKELLQQLGF   56 (121)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHTT-TCCCEEECTTTSCCCH-HHHHHHHHHTTC
T ss_pred             cEEEEECCCCHHHHHHHHHHHHc-CCCcEEEeeccCCCcH-HHHHHHHHhcCC
Confidence            37899999999999999999863 4445577776654322 124455666655

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=91.08  E-value=0.17  Score=45.71  Aligned_cols=33  Identities=12%  Similarity=0.063  Sum_probs=24.4

Q ss_pred             HHHHHHhhcccCeEEEcc-CCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGA-FWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA-~WCpHC~~qk~lfgk  274 (340)
                      .+.|++.-.+.-+..|++ .|||.|..+.+.|.+
T Consensus        69 ~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~  102 (240)
T 3qpm_A           69 ELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSD  102 (240)
T ss_dssp             EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHH
T ss_pred             EEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHH
Confidence            456666555556777888 999999998877655

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=91.04  E-value=0.23  Score=43.97  Aligned_cols=36  Identities=28%  Similarity=0.261  Sum_probs=32.1

Q ss_pred             HhhhhhCCCcccceeEEC----CEEeeCCCCHHHHHHHhC
Q 019491          297 AKACSDAKIEGFPTWVIN----GQVLSGEQDLSDLAKASG  332 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~in----G~~y~G~r~l~~La~~sg  332 (340)
                      .+..++.||+|.||++||    |+.+.|.+.++.|.+...
T Consensus       172 ~~~a~~~gv~G~Ptfvv~~~g~~~~~~G~~~~~~l~~~l~  211 (226)
T 1r4w_A          172 TGAACKYGAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLG  211 (226)
T ss_dssp             HHHHHHTTCCSSCEEEEEETTEEEEEESTTCHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCEEEEeCCCCcCceeCCCcHHHHHHHhc
Confidence            345778999999999998    889999999999999886

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=90.83  E-value=0.14  Score=44.26  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=19.6

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhH
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      ++-+++|+.+|||||++..+.+.+
T Consensus        23 ~~~vvef~d~~Cp~C~~~~~~~~~   46 (185)
T 3feu_A           23 MAPVTEVFALSCGHCRNMENFLPV   46 (185)
T ss_dssp             CCSEEEEECTTCHHHHHHGGGHHH
T ss_pred             CCEEEEEECCCChhHHHhhHHHHH
Confidence            345889999999999999776544

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=90.70  E-value=0.25  Score=42.69  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=30.3

Q ss_pred             HhhhhhCCCcccceeEE--CCEE---eeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVI--NGQV---LSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~i--nG~~---y~G~r~l~~La~~s  331 (340)
                      .+..++.||+|.||+++  ||+.   +.|.++.++|.++.
T Consensus       166 ~~~a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l  205 (216)
T 2in3_A          166 FQRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLL  205 (216)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHH
T ss_pred             HHHHHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHH
Confidence            45678899999999988  9984   89999999998765

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=90.38  E-value=0.2  Score=43.66  Aligned_cols=37  Identities=5%  Similarity=0.029  Sum_probs=24.8

Q ss_pred             CchhHHHHHHhhcccC--eEEEccCCCHHHHH-HHHHHhH
Q 019491          238 SSPFALSLAKHLHAIG--AKMYGAFWCSHCLE-QKQMFGS  274 (340)
Q Consensus       238 S~~~~~~la~~L~~~g--~~~YgA~WCpHC~~-qk~lfgk  274 (340)
                      .++..+.|++.++...  +.+|.|.|||.|.+ ..+.|.+
T Consensus        43 ~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~   82 (184)
T 3uma_A           43 DGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLE   82 (184)
T ss_dssp             TEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHH
T ss_pred             CCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHH
Confidence            3445677777554432  34667999999999 4666654

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=90.36  E-value=0.2  Score=42.62  Aligned_cols=33  Identities=6%  Similarity=-0.139  Sum_probs=22.4

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      .+.|++.-.+.-+.+|+ |.|||.|..+.+.+.+
T Consensus        43 ~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~   76 (179)
T 3ixr_A           43 CKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNL   76 (179)
T ss_dssp             EECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHH
T ss_pred             EEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHH
Confidence            34566554443455555 9999999998776654

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=90.16  E-value=0.17  Score=42.81  Aligned_cols=36  Identities=6%  Similarity=0.028  Sum_probs=28.0

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG  289 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g  289 (340)
                      .+++|+-|+||.|++.+.++.+. .....++|-..++
T Consensus         3 ~itiY~~p~C~~crkak~~L~~~-gi~~~~idi~~~~   38 (141)
T 1s3c_A            3 NITIYHNPASGTSRNTLEMIRNS-GTEPTIILYLENP   38 (141)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHHT-TCCCEEECTTTSC
T ss_pred             cEEEEECCCChHHHHHHHHHHHc-CCCEEEEECCCCC
Confidence            36799999999999999999873 4445567776554

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=90.03  E-value=0.56  Score=41.40  Aligned_cols=32  Identities=6%  Similarity=-0.139  Sum_probs=22.0

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      .+.|++.-.+.-++.|+|.|||.| ++.+.+.+
T Consensus        30 ~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~   61 (207)
T 2r37_A           30 YIPFKQYAGKYVLFVNVASYGGLT-GQYIELNA   61 (207)
T ss_dssp             EEEGGGGTTSEEEEEEECSSSTTT-THHHHHHH
T ss_pred             EEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHH
Confidence            345666555666789999999999 45554443

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=89.58  E-value=0.23  Score=42.73  Aligned_cols=34  Identities=12%  Similarity=0.045  Sum_probs=22.8

Q ss_pred             hHHHHHHhhcccC-e-EEEccCCCHHHH-HHHHHHhH
Q 019491          241 FALSLAKHLHAIG-A-KMYGAFWCSHCL-EQKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~~~g-~-~~YgA~WCpHC~-~qk~lfgk  274 (340)
                      ..+.|++.++... + .+|.|.|||.|. ++.+.|.+
T Consensus        33 ~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~   69 (173)
T 3mng_A           33 NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVE   69 (173)
T ss_dssp             CEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHH
T ss_pred             CEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHH
Confidence            4567777655432 3 355599999999 47676655

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=89.52  E-value=0.14  Score=46.26  Aligned_cols=34  Identities=12%  Similarity=0.213  Sum_probs=28.7

Q ss_pred             hhhhh-CCCcccceeEE---CCEEeeCCCC--------HHHHHHHh
Q 019491          298 KACSD-AKIEGFPTWVI---NGQVLSGEQD--------LSDLAKAS  331 (340)
Q Consensus       298 ~lC~~-~~I~GyPTw~i---nG~~y~G~r~--------l~~La~~s  331 (340)
                      +..++ .||+|.||++|   ||+.+.|.++        .++|.+..
T Consensus       161 ~~a~~~~GV~GtPtfvv~~~nG~~~~Ga~~~~~~G~~~~e~l~~~I  206 (226)
T 3f4s_A          161 SLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVI  206 (226)
T ss_dssp             HHHHHHHCCCSSCEEEEEECCTTCCCCGGGGEEESCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcCCEEEEEcCCCEEeeCCCCcccccccCHHHHHHHH
Confidence            45667 89999999999   9998888888        88887764

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=88.87  E-value=0.15  Score=43.15  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=29.0

Q ss_pred             HhhhhhCCCcccceeEECCEE-ee--CCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQV-LS--GEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~-y~--G~r~l~~La~~s  331 (340)
                      .+..++.||+|.||.+|||+. ..  |.++.++|.+..
T Consensus       152 ~~~a~~~gv~gtPt~~ing~~~~~~~g~~~~~~l~~~i  189 (195)
T 3c7m_A          152 KASYDVAKIQGVPAYVVNGKYLIYTKSIKSIDAMADLI  189 (195)
T ss_dssp             GGHHHHHHHHCSSEEEETTTEEECGGGCCCHHHHHHHH
T ss_pred             HHHHHHcCCCccCEEEECCEEEeccCCCCCHHHHHHHH
Confidence            356788999999999999985 34  889999998765

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=88.79  E-value=0.38  Score=44.09  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=23.9

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      .+.|++...+.-+.+|+ |.|||+|..+.+.|.+
T Consensus        83 ~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~  116 (254)
T 3tjj_A           83 ELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGD  116 (254)
T ss_dssp             EEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHH
T ss_pred             EEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHH
Confidence            45666665555566776 9999999988776654

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=88.78  E-value=0.21  Score=40.92  Aligned_cols=52  Identities=8%  Similarity=0.128  Sum_probs=34.4

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCc
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE  306 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~  306 (340)
                      -+++|+-|+|+.|++.+.++.+. .....++|-..++... ....++.++.|..
T Consensus         5 ~i~iY~~p~C~~c~ka~~~L~~~-gi~~~~~di~~~~~t~-~eL~~~l~~~g~~   56 (119)
T 3f0i_A            5 SVVIYHNPKCSKSRETLALLENQ-GIAPQVIKYLETSPSV-EELKRLYQQLGLN   56 (119)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHHT-TCCCEEECHHHHCCCH-HHHHHHHHHHTCS
T ss_pred             EEEEEECCCChHHHHHHHHHHHc-CCceEEEEeccCcCcH-HHHHHHHHHcCCc
Confidence            47899999999999999999863 4445566665543222 1234555555543

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=88.53  E-value=1.3  Score=41.34  Aligned_cols=69  Identities=9%  Similarity=-0.016  Sum_probs=46.8

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C-C---EEeeCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N-G---QVLSGE  321 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n-G---~~y~G~  321 (340)
                      +.-++.|+++||..   ..+.|.+.|..   .+.+.-. .+        .++|++++|+ +||+.+  + +   ..|+|.
T Consensus       143 ~~~vv~ff~~~~~~---~~~~~~~~A~~~~~~~~f~~~-~~--------~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~  209 (350)
T 1sji_A          143 QIKLIGFFKSEESE---YYKAFEEAAEHFQPYIKFFAT-FD--------KGVAKKLSLK-MNEVDFYEPFMDEPIAIPDK  209 (350)
T ss_dssp             SCEEEEECSCTTSH---HHHHHHHHHHHTTTTSEEEEE-CC--------HHHHHHHTCC-TTCEEEECTTCSSCEECSSS
T ss_pred             CcEEEEEECCCCcH---HHHHHHHHHHhhccCcEEEEE-CC--------HHHHHHcCCC-CCcEEEEeCCCCCceecCCC
Confidence            34467888998654   45667665432   2333222 12        4799999999 999876  2 2   279997


Q ss_pred             -CCHHHHHHHhC
Q 019491          322 -QDLSDLAKASG  332 (340)
Q Consensus       322 -r~l~~La~~sg  332 (340)
                       ++.++|.+|..
T Consensus       210 ~~~~~~l~~fi~  221 (350)
T 1sji_A          210 PYTEEELVEFVK  221 (350)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence             99999999874

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=87.12  E-value=0.16  Score=44.31  Aligned_cols=34  Identities=9%  Similarity=-0.001  Sum_probs=23.3

Q ss_pred             HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHH
Q 019491          242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~  275 (340)
                      .+.|++.-.+.-+..|+ +.|||+|..+.+.+.+.
T Consensus        70 ~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l  104 (200)
T 3zrd_A           70 DVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQL  104 (200)
T ss_dssp             EEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHH
T ss_pred             EEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHH
Confidence            45566654444455666 78999999998877664

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=85.47  E-value=0.91  Score=40.73  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=32.0

Q ss_pred             HhhhhhCCCcccceeEE--CC--EEeeCCCCHHHHHHHhCC
Q 019491          297 AKACSDAKIEGFPTWVI--NG--QVLSGEQDLSDLAKASGF  333 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~i--nG--~~y~G~r~l~~La~~sg~  333 (340)
                      .+..++.||.|+||+++  ||  +.+.|.+.++.|.++.+-
T Consensus       172 ~~~a~~~Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L~~  212 (234)
T 3rpp_A          172 TEAACRYGAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGE  212 (234)
T ss_dssp             HHHHHHTTCSSSCEEEEEETTEEEEEESSSCHHHHHHHHTC
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCcCceeCccCHHHHHHHhcc
Confidence            35567789999999999  47  579999999999999985

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=83.94  E-value=1.1  Score=37.65  Aligned_cols=32  Identities=9%  Similarity=-0.107  Sum_probs=22.7

Q ss_pred             HHHHHhhcccCeEEEccCCCH-HHHHHHHHHhH
Q 019491          243 LSLAKHLHAIGAKMYGAFWCS-HCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCp-HC~~qk~lfgk  274 (340)
                      +.+++...+.-++.|++.||| -|..+.+.+.+
T Consensus        21 v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~   53 (170)
T 3me7_A           21 FQLKNLKGKPIILSPIYTHCRAACPLITKSLLK   53 (170)
T ss_dssp             EEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHT
T ss_pred             EchHHhCCCEEEEEEECCCCCchhHHHHHHHHH
Confidence            344444455557789999998 59998776654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=83.63  E-value=0.077  Score=44.91  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=19.1

Q ss_pred             HHHHHHhhcc--cCeEEEc-cCCCHHHHHHHHHH
Q 019491          242 ALSLAKHLHA--IGAKMYG-AFWCSHCLEQKQMF  272 (340)
Q Consensus       242 ~~~la~~L~~--~g~~~Yg-A~WCpHC~~qk~lf  272 (340)
                      .+.|++.+.+  .-+..|+ |.|||+|..+.+.|
T Consensus        23 ~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l   56 (164)
T 4gqc_A           23 PVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTF   56 (164)
T ss_dssp             EEEHHHHHHTSSCEEEEECSCTTCCEECSSCEES
T ss_pred             EEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhh
Confidence            3456665533  2244444 99999998875544

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=80.21  E-value=5.6  Score=37.67  Aligned_cols=69  Identities=13%  Similarity=0.102  Sum_probs=46.9

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C--C--EEeeCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N--G--QVLSGE  321 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n--G--~~y~G~  321 (340)
                      +.-++.|+++||.   ...+.|.+.|..   .+.+.-.. +        .+++++++|++ ||..+  +  +  ..|+|.
T Consensus       145 ~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~~~F~~~~-~--------~~~~~~~~v~~-p~i~lf~~~~~~~~~y~g~  211 (367)
T 3us3_A          145 EIKLIGYFKNKDS---EHYKAFKEAAEEFHPYIPFFATF-D--------SKVAKKLTLKL-NEIDFYEAFMEEPVTIPDK  211 (367)
T ss_dssp             SCEEEEECSCTTC---HHHHHHHHHHHHHTTTSCEEEEC-C--------HHHHHHHTCCT-TCEEEECTTCSSCEECSSS
T ss_pred             CcEEEEEECCCCc---hHHHHHHHHHHhhcCCcEEEEEC-C--------HHHHHHcCCCC-CeEEEEcCCCCCCeecCCC
Confidence            3446788899876   445566665432   34444332 1        37899999996 99886  2  2  379995


Q ss_pred             -CCHHHHHHHhC
Q 019491          322 -QDLSDLAKASG  332 (340)
Q Consensus       322 -r~l~~La~~sg  332 (340)
                       ++.++|.+|..
T Consensus       212 ~~~~~~l~~fi~  223 (367)
T 3us3_A          212 PNSEEEIVNFVE  223 (367)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence             99999999874

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=80.05  E-value=0.64  Score=42.31  Aligned_cols=34  Identities=9%  Similarity=-0.090  Sum_probs=23.0

Q ss_pred             HHHHHHhhcccCeEEEccCC-CHHHH-----HHHHHHhHH
Q 019491          242 ALSLAKHLHAIGAKMYGAFW-CSHCL-----EQKQMFGSE  275 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~W-CpHC~-----~qk~lfgk~  275 (340)
                      .+.|++.-.+.-+.+|++-| ||.|.     .+.+.|.+.
T Consensus        40 ~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~   79 (224)
T 3keb_A           40 DAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS   79 (224)
T ss_dssp             EEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT
T ss_pred             EEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH
Confidence            45666654455566777777 99999     777766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	7e-06
d1z6ma1	172	c.47.1.13 (A:1-172) Hypothetical protein EF0770 {E	5e-05
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	4e-04
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	0.002

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.6 bits (97), Expect = 7e-06
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 314
           +++ +  C +C    ++      +  + ++          +      +  +   P   IN
Sbjct: 6   EVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK---AIEYGLMAVPAIAIN 62

Query: 315 GQV-LSGEQDLSDLAKA 330
           G V   G     +L +A
Sbjct: 63  GVVRFVGAPSREELFEA 79

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 9/98 (9%), Positives = 23/98 (23%), Gaps = 5/98 (5%)

Query: 238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS---EAVKQLNYVECFPDGYRKG- 293
           S      +  ++     +   +        Q +       E            +      
Sbjct: 72  SLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLTLEEVATYAEKNLGLKEQKDATL 131

Query: 294 -TKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 330
            + +    + A I+  PT +I   +        +L   
Sbjct: 132 VSAVIAEANAAHIQFVPTIIIGEYIFDESVTEEELRGY 169

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 314
           +++ +  C HC                  +     Y    +  +   +  I   PT VIN
Sbjct: 7   ELFTSPMCPHC---PAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVIN 63

Query: 315 GQV-LSGEQDLSDLAKA 330
           G V   G      L +A
Sbjct: 64  GDVEFIGAPTKEALVEA 80

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 2/76 (2%)

Query: 256 MYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 313
           ++G   C +C+  K +    +       Y            +  +  +   +E  P   +
Sbjct: 5   IFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV 64

Query: 314 NGQVLSGEQDLSDLAK 329
           + Q + G  D +   K
Sbjct: 65  DQQHIGGYTDFAAWVK 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.58
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.54
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.53
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.49
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.49
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.48
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.48
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.46
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.46
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.44
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.39
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.38
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.38
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.37
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.35
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.34
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.34
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.34
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.32
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.32
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.32
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.32
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.31
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.3
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.25
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.19
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.14
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.13
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.05
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.02
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.79
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.75
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.61
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.54
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.5
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.41
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.34
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.29
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.29
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	98.28
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.28
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.26
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.23
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	98.18
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.15
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	98.02
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.79
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	97.77
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.72
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.7
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	97.65
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	97.6
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.21
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	97.17
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.1
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	96.93
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	96.91
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	96.77
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	96.73
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	96.63
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	96.6
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	96.58
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.27
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	94.79
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	94.7
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	93.42
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	91.42
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	87.72
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	87.32
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	85.32
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	84.82
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	82.54
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	82.34
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	82.05
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	81.92
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	81.07
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	80.35

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.58  E-value=2.8e-15  Score=118.20  Aligned_cols=73  Identities=16%  Similarity=0.290  Sum_probs=61.2

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCCCCHHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSD  326 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~  326 (340)
                      ..+++|+++|||||+++++.|.+-|..    .+.+||++.+        +++|+++||+++||+++||+ .|.|.+++++
T Consensus        17 ~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~--------~~l~~~~~I~~vPt~~~ng~~~~~G~~~~~~   88 (96)
T d1hyua4          17 FEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTF--------QNEITERNVMGVPAVFVNGKEFGQGRMTLTE   88 (96)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTC--------HHHHHHTTCCSSSEEEETTEEEEESCCCHHH
T ss_pred             eEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccc--------hHHHhhcccccccEEEECCEEEEecCCCHHH
Confidence            457789999999999999999875532    2457788754        59999999999999999998 6899999999


Q ss_pred             HHHHhC
Q 019491          327 LAKASG  332 (340)
Q Consensus       327 La~~sg  332 (340)
                      |.++..
T Consensus        89 l~~~le   94 (96)
T d1hyua4          89 IVAKVD   94 (96)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998754

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.54  E-value=1.6e-15  Score=116.49  Aligned_cols=72  Identities=14%  Similarity=0.292  Sum_probs=58.7

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCCCCHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLS  325 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~r~l~  325 (340)
                      +.+.+|+|+|||||+++++.|.+-+.   .++.  .||++.+        +++++++||+++||+.+||+ +|.|.++.+
T Consensus         3 v~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~--------~~l~~~~~V~~~Pt~~~~~~~~~~G~~~~~   74 (85)
T d1nhoa_           3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD--------REKAIEYGLMAVPAIAINGVVRFVGAPSRE   74 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTC--------GGGGGGTCSSCSSEEEETTTEEEECSSCCH
T ss_pred             EEEEEEECCCCcchHHHHHHHhhhcccccccccccccccccc--------hhhHHhcCceEeCEEEECCcEEEEcCCCHH
Confidence            34678999999999999999987542   2344  5666543        48999999999999999876 799999999


Q ss_pred             HHHHHh
Q 019491          326 DLAKAS  331 (340)
Q Consensus       326 ~La~~s  331 (340)
                      +|.++.
T Consensus        75 ~l~~~i   80 (85)
T d1nhoa_          75 ELFEAI   80 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.53  E-value=1.8e-15  Score=115.27  Aligned_cols=75  Identities=21%  Similarity=0.425  Sum_probs=59.8

Q ss_pred             hcccCeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCCC
Q 019491          249 LHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQ  322 (340)
Q Consensus       249 L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~r  322 (340)
                      ++++.+++|+|+|||||++++|.|.+.+.+   .  +..+||+.+        .++|++++|+|+||.+++++ ++.|.+
T Consensus         1 m~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~--------~~la~~~~V~~~Pt~~i~~~g~~~G~~   72 (85)
T d1fo5a_           1 MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMEN--------PQKAMEYGIMAVPTIVINGDVEFIGAP   72 (85)
T ss_dssp             CCCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSS--------CCTTTSTTTCCSSEEEETTEEECCSSS
T ss_pred             CCceEEEEEECCCCcChHhhhhhcccccccccccccccccccccc--------ccccccCCceEeeEEEEECCcEEECCC
Confidence            356678899999999999999999875432   1  335676643        37899999999999998554 789999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        73 ~~~~l~~~i   81 (85)
T d1fo5a_          73 TKEALVEAI   81 (85)
T ss_dssp             SSHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999998874

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.49  E-value=2.1e-14  Score=113.67  Aligned_cols=70  Identities=16%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD  323 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~  323 (340)
                      +++|+|+|||||+++++.|.+.+.+     .+.+|||+.+        .++|++++|++|||.++  ||+   +|.|.++
T Consensus        23 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~   94 (107)
T d1dbya_          23 LVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES--------PNVASEYGIRSIPTIMVFKGGKKCETIIGAVP   94 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHHTCCSSCEEEEESSSSEEEEEESCCC
T ss_pred             EEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccc--------hhHHHHhcccceEEEEEEECCeEEEEEeCCCC
Confidence            6789999999999999999775422     2457888754        58999999999999887  786   6999999


Q ss_pred             HHHHHHHh
Q 019491          324 LSDLAKAS  331 (340)
Q Consensus       324 l~~La~~s  331 (340)
                      .++|.++.
T Consensus        95 ~~~l~~~i  102 (107)
T d1dbya_          95 KATIVQTV  102 (107)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.49  E-value=3e-14  Score=112.98  Aligned_cols=70  Identities=20%  Similarity=0.310  Sum_probs=58.8

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD  323 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~  323 (340)
                      +++|+|+|||||+++++.|.+.+.+   .  +..|||+.+        .++|++++|+++||..+  ||+   +|.|.++
T Consensus        24 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~I~~~Pt~~~~~~g~~v~~~~G~~~   95 (108)
T d1thxa_          24 LVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPN--------PTTVKKYKVEGVPALRLVKGEQILDSTEGVIS   95 (108)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEESCCC
T ss_pred             EEEEECCCCCCccccchHHHHHHHhcCCcceeceeccccc--------HHHHHHhcccCCCEEEEEECCEEEEEEeCCCC
Confidence            6789999999999999999875421   2  447888754        58999999999999887  887   7999999


Q ss_pred             HHHHHHHh
Q 019491          324 LSDLAKAS  331 (340)
Q Consensus       324 l~~La~~s  331 (340)
                      .++|.++.
T Consensus        96 ~~~l~~~i  103 (108)
T d1thxa_          96 KDKLLSFL  103 (108)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=3.8e-14  Score=112.13  Aligned_cols=70  Identities=19%  Similarity=0.308  Sum_probs=58.1

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD  323 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~  323 (340)
                      +++|+|+||+||+++++.|.+.+.+   +  +..|||+.+        +++|++++|++|||+++  ||+   +|.|.++
T Consensus        24 ~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~PT~~~~~~G~~v~~~~G~~~   95 (108)
T d2trxa_          24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS   95 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC--------TTHHHHTTCCSSSEEEEEETTEEEEEEESCCC
T ss_pred             EEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccch--------hhHHHHhCCCcEEEEEEEECCEEEEEEeCCCC
Confidence            6689999999999999999775532   2  346777644        48899999999999887  887   6999999


Q ss_pred             HHHHHHHh
Q 019491          324 LSDLAKAS  331 (340)
Q Consensus       324 l~~La~~s  331 (340)
                      .++|.++.
T Consensus        96 ~~~l~~~i  103 (108)
T d2trxa_          96 KGQLKEFL  103 (108)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.48  E-value=4.4e-14  Score=111.06  Aligned_cols=71  Identities=18%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      -+++|||+|||||+++++.|.+.+.+   +  +..|||+.+        .++|++++|++|||+++  ||+   ++.|.+
T Consensus        20 vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~--------~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~   91 (104)
T d1fb6a_          20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA--------PGIATQYNIRSIPTVLFFKNGERKESIIGAV   91 (104)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTEEEEEEEECC
T ss_pred             EEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccc--------hhhhhhcceeeeeEEEEEEcCeEEEEEeCCC
Confidence            36789999999999999999875422   2  335677643        58999999999999887  887   799999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        92 ~~~~l~~~i  100 (104)
T d1fb6a_          92 PKSTLTDSI  100 (104)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999999875

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.46  E-value=6.9e-14  Score=110.28  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=61.6

Q ss_pred             hHHHHHHhhccc-CeEEEccCCCHHHHHHHHHHhHHhhc-------cCc--eeECCCCCCCCChhhHhhhhhCCCcccce
Q 019491          241 FALSLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEAVK-------QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPT  310 (340)
Q Consensus       241 ~~~~la~~L~~~-g~~~YgA~WCpHC~~qk~lfgk~A~~-------~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPT  310 (340)
                      ...+.++.+++. .+.+|+|+|||||++++|.|.+.|..       ++.  .||++.+        +++|++++|+|+||
T Consensus         5 ~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~--------~~l~~~~~V~~vPT   76 (107)
T d1a8la2           5 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY--------PEWADQYNVMAVPK   76 (107)
T ss_dssp             HHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC--------HHHHHHTTCCSSCE
T ss_pred             HHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc--------cccccccccccceE
Confidence            344444444443 35579999999999999999875421       233  4566532        58999999999999


Q ss_pred             eEE--CCE---EeeCCCCHHHHHHHh
Q 019491          311 WVI--NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       311 w~i--nG~---~y~G~r~l~~La~~s  331 (340)
                      .++  ||+   ++.|.++.+++.++.
T Consensus        77 i~i~~~G~~~~~~~G~~~~~~~~~~i  102 (107)
T d1a8la2          77 IVIQVNGEDRVEFEGAYPEKMFLEKL  102 (107)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHH
T ss_pred             EEEEeCCeEEEEEECCCCHHHHHHHH
Confidence            877  786   789999999998764

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=9.2e-14  Score=112.40  Aligned_cols=72  Identities=24%  Similarity=0.461  Sum_probs=59.6

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhh----c--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----Eee
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAV----K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----VLS  319 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~----~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-----~y~  319 (340)
                      -+++||||||+||+++++.|.+.+.    .  .+..|||+.+        .++|++++|++|||.++  ||+     +|.
T Consensus        30 ~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pti~~f~~g~~~~~~~y~  101 (119)
T d2b5ea4          30 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN--------QDLCMEHNIPGFPSLKIFKNSDVNNSIDYE  101 (119)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTCTTCEEECC
T ss_pred             EEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccch--------HHHHHHhccccCCeEEEEECCEEeeeEEec
Confidence            4778999999999999999987552    1  2457999854        48999999999999887  774     589


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.++|.+|..
T Consensus       102 g~~~~~~l~~fi~  114 (119)
T d2b5ea4         102 GPRTAEAIVQFMI  114 (119)
T ss_dssp             SCCSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence            9999999999864

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.44  E-value=1.2e-13  Score=108.86  Aligned_cols=72  Identities=19%  Similarity=0.267  Sum_probs=59.9

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      -+++|||+||+||+++++.|.+.+.+     .+..|||+.+        .++|++++|+++||.++  ||+   ++.|.+
T Consensus        20 vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~V~~~Pt~~~~~~G~~~~~~~G~~   91 (105)
T d1nw2a_          20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN--------PETTSQFGIMSIPTLILFKGGEPVKQLIGYQ   91 (105)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTC--------HHHHHHTTCCBSSEEEEEETTEEEEEEESCC
T ss_pred             EEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCC--------cccHHHCCcceeeEEEEEECCEEEEEEECCC
Confidence            37789999999999999999875421     2457888754        58899999999999887  887   799999


Q ss_pred             CHHHHHHHhC
Q 019491          323 DLSDLAKASG  332 (340)
Q Consensus       323 ~l~~La~~sg  332 (340)
                      +.++|.++..
T Consensus        92 ~~~~l~~~i~  101 (105)
T d1nw2a_          92 PKEQLEAQLA  101 (105)
T ss_dssp             CHHHHHHHTT
T ss_pred             CHHHHHHHHH
Confidence            9999998753

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-13  Score=111.38  Aligned_cols=74  Identities=20%  Similarity=0.355  Sum_probs=58.7

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----  316 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-----  316 (340)
                      .=+++|||+||+||+++++.|.+.+.+        .+..|||+.+        .++|++++|+||||+++  +|+     
T Consensus        26 ~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~G~~~~~~   97 (120)
T d1meka_          26 YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE--------SDLAQQYGVRGYPTIKFFRNGDTASPK   97 (120)
T ss_dssp             EEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC--------CSSHHHHTCCSSSEEEEEESSCSSSCE
T ss_pred             cEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccc--------hhHHHHhCCccCCeEEEEECCeEeeeE
Confidence            336678899999999999999775421        2346888754        37899999999999876  663     


Q ss_pred             EeeCCCCHHHHHHHhCC
Q 019491          317 VLSGEQDLSDLAKASGF  333 (340)
Q Consensus       317 ~y~G~r~l~~La~~sg~  333 (340)
                      +|.|.|+.++|.+|..-
T Consensus        98 ~~~g~~~~~~l~~fi~~  114 (120)
T d1meka_          98 EYTAGREADDIVNWLKK  114 (120)
T ss_dssp             ECCCCSSHHHHHHHHHT
T ss_pred             EecCCCCHHHHHHHHHH
Confidence            68999999999998754

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.38  E-value=7.5e-13  Score=106.32  Aligned_cols=81  Identities=12%  Similarity=0.200  Sum_probs=63.5

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      ++..+++|||+|||||++++|.|.+.+.   .++.+|+.+.+.  +.....++.++++|+++||+++  ||+   ++.|.
T Consensus        26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~--~~~~~~~~~~~~~V~~~PTli~~~~gk~~~~~~G~  103 (115)
T d1zmaa1          26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS--QLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSS  103 (115)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGG--GHHHHHHHHHHHTCCSSCEEEEEETTEEEEECCTT
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccc--ccccccccccccccccccEEEEEECCEEEEEEcCC
Confidence            5567889999999999999999976432   246688886432  1112357899999999999887  887   79999


Q ss_pred             CCHHHHHHHhC
Q 019491          322 QDLSDLAKASG  332 (340)
Q Consensus       322 r~l~~La~~sg  332 (340)
                      ++.++|.+|..
T Consensus       104 ~~~~el~~fla  114 (115)
T d1zmaa1         104 MSAQEIKDFAG  114 (115)
T ss_dssp             CCHHHHHHHHT
T ss_pred             CCHHHHHHHHc
Confidence            99999999864

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.38  E-value=2.6e-13  Score=110.39  Aligned_cols=71  Identities=14%  Similarity=0.060  Sum_probs=54.1

Q ss_pred             CeEEEccCCCHHHHHHH------HHHhHHhh------ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--
Q 019491          253 GAKMYGAFWCSHCLEQK------QMFGSEAV------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--  316 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk------~lfgk~A~------~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--  316 (340)
                      =+++||||||+||+-++      +.+.+.|.      ..+..|||+.+        .++|++++|++|||.++  +|+  
T Consensus        31 ~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~--------~~l~~~~~I~~yPTi~~f~~g~~~  102 (124)
T d1a8ya1          31 LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD--------AAVAKKLGLTEEDSIYVFKEDEVI  102 (124)
T ss_dssp             EEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTS--------HHHHHTTTCCSTTCEEEEESSSEE
T ss_pred             EEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecc--------cchhhccccccCCcEEEeccCccE
Confidence            47899999999975332      22332221      12678999865        58999999999999876  776  


Q ss_pred             EeeCCCCHHHHHHHh
Q 019491          317 VLSGEQDLSDLAKAS  331 (340)
Q Consensus       317 ~y~G~r~l~~La~~s  331 (340)
                      +|+|.|+.++|.+|.
T Consensus       103 ~y~G~r~~~~l~~fi  117 (124)
T d1a8ya1         103 EYDGEFSADTLVEFL  117 (124)
T ss_dssp             ECCSCCSHHHHHHHH
T ss_pred             EeeCCCCHHHHHHHH
Confidence            799999999999885

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=2.3e-13  Score=110.76  Aligned_cols=77  Identities=10%  Similarity=0.019  Sum_probs=57.7

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCC--cccceeEE--CCE--
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVI--NGQ--  316 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I--~GyPTw~i--nG~--  316 (340)
                      +.-+++||||||+||+  ++.|.+.|.+        .+..|||+..+.+.   ..++|++++|  +||||..+  +|+  
T Consensus        20 ~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~---n~~l~~~~~i~~~~~PTi~~f~~g~~~   94 (122)
T d2c0ga2          20 PYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELE---NKALGDRYKVDDKNFPSIFLFKGNADE   94 (122)
T ss_dssp             SEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCT---THHHHHHTTCCTTSCCEEEEESSSSSS
T ss_pred             CcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEecccccccccc---CHHHHHHhhcccCCCCcEEEEeCCccc
Confidence            4457899999999999  3788765421        25689997543222   4699999988  58999887  553  


Q ss_pred             ----EeeCCCCHHHHHHHhC
Q 019491          317 ----VLSGEQDLSDLAKASG  332 (340)
Q Consensus       317 ----~y~G~r~l~~La~~sg  332 (340)
                          .|+|.|+.++|.+|..
T Consensus        95 ~~~~~~~g~rt~~~l~~fv~  114 (122)
T d2c0ga2          95 YVQLPSHVDVTLDNLKAFVS  114 (122)
T ss_dssp             EEECCTTSCCCHHHHHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHH
Confidence                4789999999999874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.35  E-value=7.4e-13  Score=106.20  Aligned_cols=69  Identities=22%  Similarity=0.385  Sum_probs=55.4

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCCH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDL  324 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~l  324 (340)
                      ++.|||+|||||+.++|.|.+.+.+  .  +-.|||+.+        .++|++++|+++||+.+  ||+   ++.| .+.
T Consensus        30 vv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~I~~~Pt~~~~k~G~~v~~~~G-~~~  100 (113)
T d1ti3a_          30 VVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDEL--------KAVAEEWNVEAMPTFIFLKDGKLVDKTVG-ADK  100 (113)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTC--------HHHHHHHHCSSTTEEEEEETTEEEEEEEC-CCT
T ss_pred             EEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeecc--------ccccccCeecccceEEEEECCEEEEEEcC-CCH
Confidence            6679999999999999999875422  2  446777643        58999999999999887  997   5778 678


Q ss_pred             HHHHHHh
Q 019491          325 SDLAKAS  331 (340)
Q Consensus       325 ~~La~~s  331 (340)
                      ++|.++.
T Consensus       101 ~~l~~~i  107 (113)
T d1ti3a_         101 DGLPTLV  107 (113)
T ss_dssp             THHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.34  E-value=1.9e-12  Score=104.05  Aligned_cols=72  Identities=21%  Similarity=0.345  Sum_probs=55.3

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      +.-++.|+|+||+||++++|.|.+.+.  ..+.  .||++.+        .++|++++|+++||+++  ||+   ++.|.
T Consensus        29 ~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~--------~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~  100 (114)
T d1xfla_          29 TLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDEL--------KSVASDWAIQAMPTFMFLKEGKILDKVVGA  100 (114)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTS--------HHHHHHTTCCSSSEEEEEETTEEEEEEESC
T ss_pred             CeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeec--------eeeccccceeeeEEEEEEECCEEEEEEeCc
Confidence            334667999999999999999987542  2333  4555432        58999999999999887  897   57885


Q ss_pred             CCHHHHHHHh
Q 019491          322 QDLSDLAKAS  331 (340)
Q Consensus       322 r~l~~La~~s  331 (340)
                       +.++|.++.
T Consensus       101 -~~~~l~~~i  109 (114)
T d1xfla_         101 -KKDELQSTI  109 (114)
T ss_dssp             -CHHHHHHHH
T ss_pred             -CHHHHHHHH
Confidence             679998864

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.34  E-value=3.3e-13  Score=107.33  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=56.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc--c-----CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----Eee
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK--Q-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----VLS  319 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~--~-----l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-----~y~  319 (340)
                      +++|+|+||+||++++|.|.+.|..  .     ...++|...        .+.|.+++|+||||..+  +|+     +|.
T Consensus        24 lV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~Pti~~f~~g~~~~~~~~~   95 (116)
T d2djja1          24 LIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDA--------TANDVPDEIQGFPTIKLYPAGAKGQPVTYS   95 (116)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEET--------TTSCCSSCCSSSSEEEEECSSCTTSCCCCC
T ss_pred             EEEEEecccccccccchHHHHHHHHHhcccccceeEEEeccc--------chhhhcccccCCCEEEEEECCccCceEEec
Confidence            7899999999999999999886421  1     224555533        24577889999999876  654     589


Q ss_pred             CCCCHHHHHHHhCCCCC
Q 019491          320 GEQDLSDLAKASGFPEM  336 (340)
Q Consensus       320 G~r~l~~La~~sg~~g~  336 (340)
                      |.|+.++|.+|..-.+.
T Consensus        96 g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          96 GSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             CCSCHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHccC
Confidence            99999999999764443

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.34  E-value=1.8e-12  Score=104.02  Aligned_cols=71  Identities=21%  Similarity=0.313  Sum_probs=56.5

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc---cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE  321 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~  321 (340)
                      .=+++|+|+||+||+.+++.|.+.+.+   ++.  .|||+.+        +++|++++|+++||+++  ||+   ++.|.
T Consensus        26 ~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~--------~~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~   97 (112)
T d1ep7a_          26 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAV--------AAVAEAAGITAMPTFHVYKDGVKADDLVGA   97 (112)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTT--------HHHHHHHTCCBSSEEEEEETTEEEEEEESC
T ss_pred             eEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecccc--------ccccccccccCCCEEEEEECCEEEEEEeCc
Confidence            347889999999999999999875432   344  5666533        58999999999999887  887   68885


Q ss_pred             CCHHHHHHHh
Q 019491          322 QDLSDLAKAS  331 (340)
Q Consensus       322 r~l~~La~~s  331 (340)
                       +.++|.++.
T Consensus        98 -~~~~l~~~i  106 (112)
T d1ep7a_          98 -SQDKLKALV  106 (112)
T ss_dssp             -CHHHHHHHH
T ss_pred             -CHHHHHHHH
Confidence             889998875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.4e-12  Score=101.72  Aligned_cols=70  Identities=24%  Similarity=0.391  Sum_probs=55.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCC
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD  323 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~  323 (340)
                      -++.|+|+||+||+++++.|.+.+.+  .  +.+||++.+        .+++++++|+++||+.+  ||+   ++.|. +
T Consensus        23 vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~--------~~~~~~~~V~~~Pt~~~~~~G~~v~~~~G~-~   93 (105)
T d2ifqa1          23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDC--------QDVASECEVKCMPTFQFFKKGQKVGEFSGA-N   93 (105)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCBSSEEEEEETTEEEEEEESC-C
T ss_pred             EEEEEEcCCccchhhhhhhhhhhccccccceeeecccccC--------HhHHHHcCceEEEEEEEEECCEEEEEEeCC-C
Confidence            36689999999999999999775422  2  346777643        58899999999999887  997   68996 7


Q ss_pred             HHHHHHHh
Q 019491          324 LSDLAKAS  331 (340)
Q Consensus       324 l~~La~~s  331 (340)
                      .++|.++.
T Consensus        94 ~~~l~~~i  101 (105)
T d2ifqa1          94 KEKLEATI  101 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            78888764

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=5.4e-13  Score=110.34  Aligned_cols=72  Identities=25%  Similarity=0.408  Sum_probs=56.4

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----Eee
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----VLS  319 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-----~y~  319 (340)
                      -+++|+||||+||+++++.|.+.|..      .+..++|+.+        .++|++++|++|||.++  +|+     .|.
T Consensus        33 vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--------~~~~~~~~v~~~Ptl~~f~~g~~~~~~~y~  104 (140)
T d2b5ea1          33 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--------ENDVRGVVIEGYPTIVLYPGGKKSESVVYQ  104 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--------GCCCSSCCCSSSSEEEEECCTTSCCCCBCC
T ss_pred             EEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--------chhccccccccCCeEEEEECCEEcceeEeC
Confidence            36789999999999999999875421      2445555433        25699999999999887  653     489


Q ss_pred             CCCCHHHHHHHhC
Q 019491          320 GEQDLSDLAKASG  332 (340)
Q Consensus       320 G~r~l~~La~~sg  332 (340)
                      |.++.++|.+|..
T Consensus       105 G~~t~~~l~~fi~  117 (140)
T d2b5ea1         105 GSRSLDSLFDFIK  117 (140)
T ss_dssp             SCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
Confidence            9999999998864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=2.8e-12  Score=102.12  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=58.6

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG  315 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG  315 (340)
                      ..|.+.=.+.=++.|+|+||+||+++++.|.+.+.+   .  +-.|+|+.+        .++|++++|+++||+.+  ||
T Consensus        18 ~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~--------~~l~~~~~V~~~Pt~~~~~~G   89 (111)
T d1xwaa_          18 GQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC--------EDIAMEYNISSMPTFVFLKNG   89 (111)
T ss_dssp             HHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecC--------cchhhcCCCccccEEEEEECC
Confidence            344444333446679999999999999999876432   2  235777643        58999999999999887  88


Q ss_pred             E---EeeCCCCHHHHHHHh
Q 019491          316 Q---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       316 ~---~y~G~r~l~~La~~s  331 (340)
                      +   ++.|. +.++|.++.
T Consensus        90 ~~v~~~~G~-~~~~l~~~I  107 (111)
T d1xwaa_          90 VKVEEFAGA-NAKRLEDVI  107 (111)
T ss_dssp             EEEEEEESC-CHHHHHHHH
T ss_pred             EEEEEEeCC-CHHHHHHHH
Confidence            7   68886 457787764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.32  E-value=2.4e-12  Score=103.55  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=56.0

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      .-+++|+|+|||||+.+++.|.+.+.+  .  +-.|||+.+       .+++|++++|+++||+.+  ||+   ++.|. 
T Consensus        27 ~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~-------~~~l~~~~~V~~~Pt~~~~k~G~~v~~~~G~-   98 (112)
T d1f9ma_          27 PVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE-------NKTLAKELGIRVVPTFKILKENSVVGEVTGA-   98 (112)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSST-------THHHHHHHCCSSSSEEEEEETTEEEEEEESS-
T ss_pred             EEEEEEEcCCCcchHHHHHHHhhhccccccceeeccccccc-------chhhHhheeeccCCEEEEEECCEEEEEEeCC-
Confidence            347789999999999999999886532  2  336777643       258999999999999887  897   59996 


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        99 ~~~~l~e~i  107 (112)
T d1f9ma_          99 KYDKLLEAI  107 (112)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            557777654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.31  E-value=3.7e-12  Score=100.16  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=56.1

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      .-++.|+|+||+||+.+++.|.+.+.+  .  +..|||+.+        .++|++++|+++||+.+  ||+   ++.|. 
T Consensus        20 ~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~--------~~~~~~~~V~~~Pt~i~~k~G~~v~~~~G~-   90 (103)
T d1syra_          20 LVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEV--------SEVTEKENITSMPTFKVYKNGSSVDTLLGA-   90 (103)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTT--------HHHHHHTTCCSSSEEEEEETTEEEEEEESC-
T ss_pred             cEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccC--------cceeeeeeeecceEEEEEECCEEEEEEeCc-
Confidence            336678999999999999999875432  2  346777643        58999999999999887  897   68995 


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        91 ~~~~l~~~i   99 (103)
T d1syra_          91 NDSALKQLI   99 (103)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            678888875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.30  E-value=4.2e-12  Score=102.41  Aligned_cols=77  Identities=17%  Similarity=0.347  Sum_probs=56.7

Q ss_pred             HHHhhcccC--eEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491          245 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ  316 (340)
Q Consensus       245 la~~L~~~g--~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~  316 (340)
                      +.+.+++..  +++|+|+|||||+.++|.|.+.+.  ..+.  .|||+.+        .++++++||+++||+.+  ||+
T Consensus        19 ~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~--------~~l~~~~~V~~~Pt~~~~~~G~   90 (113)
T d1r26a_          19 FRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNN--------SEIVSKCRVLQLPTFIIARSGK   90 (113)
T ss_dssp             HHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTC--------HHHHHHTTCCSSSEEEEEETTE
T ss_pred             HHHHHcCCCeEEEEEECCCCccchhhceeccccccccccccccccccccc--------hhhHHHccccCCCEEEEEECCE
Confidence            334444433  667999999999999999988653  2343  5666533        58999999999999988  897


Q ss_pred             ---EeeCCCCHHHHHHH
Q 019491          317 ---VLSGEQDLSDLAKA  330 (340)
Q Consensus       317 ---~y~G~r~l~~La~~  330 (340)
                         ++.|. +.++|.+.
T Consensus        91 ~v~~~~G~-~~~~l~~~  106 (113)
T d1r26a_          91 MLGHVIGA-NPGMLRQK  106 (113)
T ss_dssp             EEEEEESS-CHHHHHHH
T ss_pred             EEEEEeCC-CHHHHHHH
Confidence               68885 45666554

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=98.78  Aligned_cols=71  Identities=21%  Similarity=0.274  Sum_probs=55.7

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      .=++.|+|+|||||++++|.|.+.+.+  .+.  .||++.+        .+++++++|+++||+.+  ||+   ++.|. 
T Consensus        23 lvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~--------~~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~-   93 (107)
T d1gh2a_          23 LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQC--------QGTAATNNISATPTFQFFRNKVRIDQYQGA-   93 (107)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTS--------HHHHHHTTCCSSSEEEEEETTEEEEEEESS-
T ss_pred             EEEEEEECCCCCCccccchhhhccccccccccccccccccc--------hhhhhhcCceeceEEEEEECCEEEEEEeCC-
Confidence            336679999999999999999886532  333  4666533        58999999999999887  897   68895 


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus        94 ~~~~l~~~i  102 (107)
T d1gh2a_          94 DAVGLEEKI  102 (107)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            889988764

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.9e-11  Score=97.25  Aligned_cols=88  Identities=17%  Similarity=0.180  Sum_probs=61.7

Q ss_pred             hhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHH-----hhccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491          240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE-----AVKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWV  312 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~-----A~~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~  312 (340)
                      ....++++.=.+.=+++|+|+|||||+++++.+-+.     .....  -.++.+.+..    ...+++++++|+||||..
T Consensus        12 ~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~v~~~Pt~~   87 (117)
T d2fwha1          12 ELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDA----QDVALLKHLNVLGLPTIL   87 (117)
T ss_dssp             HHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCH----HHHHHHHHTTCCSSSEEE
T ss_pred             HHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchh----HHHHHHhhhehhhceEEE
Confidence            345566665455567889999999999998865221     11122  2456554421    246899999999999988


Q ss_pred             E---CCE-----EeeCCCCHHHHHHHh
Q 019491          313 I---NGQ-----VLSGEQDLSDLAKAS  331 (340)
Q Consensus       313 i---nG~-----~y~G~r~l~~La~~s  331 (340)
                      +   ||+     ++.|.++.++|.++.
T Consensus        88 ~~~~~G~~~~~~~~~G~~~~~~~~~~l  114 (117)
T d2fwha1          88 FFDGQGQEHPQARVTGFMDAETFSAHL  114 (117)
T ss_dssp             EECTTSCBCGGGCBCSCCCHHHHHHHH
T ss_pred             EEeCCCcEEecccccccCCHHHHHHHH
Confidence            7   575     467999999998875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.3e-12  Score=106.45  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      +..|+|+|||||+++.+.+.+.+.+      .+.+|||+.+        .++|++++|+++||+.+  ||+   +++|.+
T Consensus        40 ll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~--------~~la~~~~V~~~PT~~~~~~G~~v~~~~G~~  111 (132)
T d2hfda1          40 LLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS--------EAIGDRFGVFRFPATLVFTGGNYRGVLNGIH  111 (132)
T ss_dssp             EECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHH--------HHHHHHHTCCSCCEEEEEETTEEEEEECCCS
T ss_pred             EEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCC--------HHHHHhhccCcceeEEEEEcCcEeeeecCCC
Confidence            4458899999999999999886432      1346888743        69999999999999887  897   699999


Q ss_pred             CHHHHHHHhC
Q 019491          323 DLSDLAKASG  332 (340)
Q Consensus       323 ~l~~La~~sg  332 (340)
                      +.++|.++..
T Consensus       112 ~~~~l~~~i~  121 (132)
T d2hfda1         112 PWAELINLMR  121 (132)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999998875

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.13  E-value=8e-12  Score=102.05  Aligned_cols=70  Identities=11%  Similarity=0.122  Sum_probs=52.7

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc----cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ  322 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~----~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r  322 (340)
                      +..|+|.|||||+++.+.|.+.+.+    ++  .+|||+.+        .++|+++||+++||..+  ||+   +++|.+
T Consensus        34 ll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~--------~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~  105 (119)
T d2es7a1          34 LLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQS--------EAIGDRFNVRRFPATLVFTDGKLRGALSGIH  105 (119)
T ss_dssp             EECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHH--------HHHHHTTTCCSSSEEEEESCC----CEESCC
T ss_pred             EEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCC--------HHHHHhcCcCcceEEEEEEcCeEEEEeeCCC
Confidence            4457899999999999999886432    23  46888743        58999999999999887  887   699999


Q ss_pred             CHHHHHHHh
Q 019491          323 DLSDLAKAS  331 (340)
Q Consensus       323 ~l~~La~~s  331 (340)
                      +.++|.++.
T Consensus       106 ~~~~l~~~i  114 (119)
T d2es7a1         106 PWAELLTLM  114 (119)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999998764

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.1e-10  Score=94.86  Aligned_cols=58  Identities=14%  Similarity=0.124  Sum_probs=46.2

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEE
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV  317 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~  317 (340)
                      .-++.|+|+||+||++++|.|.+.|.+     .+..|||+.+        ++++++++|+++||.++  ||+.
T Consensus        24 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~--------~~la~~~~I~~~PT~~~f~~g~~   88 (137)
T d1qgva_          24 VVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV--------PDFNKMYELYDPCTVMFFFRNKH   88 (137)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTC--------CTTTTSSCSCSSCEEEEEETTEE
T ss_pred             EEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeecccc--------chhhhhcCeeeEEEEEEEeCCcE
Confidence            346679999999999999999876532     2456888754        48999999999999887  8873

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=3.1e-10  Score=91.82  Aligned_cols=82  Identities=10%  Similarity=0.045  Sum_probs=54.8

Q ss_pred             ccCeEEEccCCC-----HHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhC--CCcccceeEE--CCE-----
Q 019491          251 AIGAKMYGAFWC-----SHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA--KIEGFPTWVI--NGQ-----  316 (340)
Q Consensus       251 ~~g~~~YgA~WC-----pHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~--~I~GyPTw~i--nG~-----  316 (340)
                      +.=+++|+||||     |||+++.+.|.+.+...++.|++..-.   .++..++|+++  +|+||||..+  +|+     
T Consensus        22 ~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd---~~~n~~l~~~~~~~I~~yPTi~~f~~G~~~~~~   98 (122)
T d1g7ea_          22 KFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYG---DKLNMELSEKYKLDKESYPVFYLFRDGDFENPV   98 (122)
T ss_dssp             SEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTT---SCHHHHHHHHHTCSSSSCEEEEEEESSCCCCCE
T ss_pred             CeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeecc---ccccHHHHHhhcccccCCCeEEEEecCcccCce
Confidence            344789988887     566677777766432223345443211   11236889875  5889999876  663     


Q ss_pred             EeeCCCCHHHHHHHhCCCC
Q 019491          317 VLSGEQDLSDLAKASGFPE  335 (340)
Q Consensus       317 ~y~G~r~l~~La~~sg~~g  335 (340)
                      +|+|.|+.++|.+|..-++
T Consensus        99 ~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          99 PYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             EEESCCCHHHHHHHHHTTS
T ss_pred             ecCCCCCHHHHHHHHHhcc
Confidence            6999999999999986554

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.3e-09  Score=85.93  Aligned_cols=67  Identities=16%  Similarity=0.304  Sum_probs=44.9

Q ss_pred             eEEEcc-------CCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEEee
Q 019491          254 AKMYGA-------FWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQVLS  319 (340)
Q Consensus       254 ~~~YgA-------~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~y~  319 (340)
                      +++|+|       +|||||++++|.|.+.+.+   +  +..||++...... .+..+++++++|+|+||..+  ||++..
T Consensus        25 ~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~-d~~~~l~~~~~V~~iPT~i~~~~g~~l~  103 (119)
T d1woua_          25 FAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWK-DPNNDFRKNLKVTAVPTLLKYGTPQKLV  103 (119)
T ss_dssp             EEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHH-CTTCHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred             EEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccc-hhhhhHHHhCCeEEEEEEEEEECCeEEe
Confidence            567767       6999999999999875422   2  3457764210000 01247899999999999887  777654


Q ss_pred             CC
Q 019491          320 GE  321 (340)
Q Consensus       320 G~  321 (340)
                      +.
T Consensus       104 ~~  105 (119)
T d1woua_         104 ES  105 (119)
T ss_dssp             GG
T ss_pred             ee
Confidence            33

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.75  E-value=1.2e-08  Score=75.63  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .+++|+.+|||+|++.|++|.+. .....++|.+.|.     ...+..++.|.+++|+.++||+...|- +.++|.++.
T Consensus         2 ~v~iYt~~~C~~C~~ak~~L~~~-~i~~~~~~i~~~~-----~~~~~~~~~g~~tvP~i~i~g~~igGf-~~d~l~~L~   73 (74)
T d1r7ha_           2 SITLYTKPACVQCTATKKALDRA-GLAYNTVDISLDD-----EARDYVMALGYVQAPVVEVDGEHWSGF-RPERIKQLQ   73 (74)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-TCCCEEEETTTCH-----HHHHHHHHTTCBCCCEEEETTEEEESC-CHHHHHHHH
T ss_pred             EEEEEeCCCChhHHHHHHHHHHc-CCceEEEEccCCH-----HHHHHHHHhCCCCcCEEEECCEEEeCC-CHhHHHHhh
Confidence            37899999999999999999874 3233445555432     245777889999999999999877765 467777653

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=3.8e-08  Score=77.38  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=56.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhc-cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCCCCHHHHHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKA  330 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~-~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~La~~  330 (340)
                      .+++|+++|||+|++.++.+.+.+.+ ....|+.+.+.      ..++-++++++ .|+..|||+ ...|..+.++|.++
T Consensus        18 ~i~lft~~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~------~~~l~~~y~~~-VPvl~idg~~~~~g~~d~~~L~~~   90 (100)
T d1wjka_          18 VLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPE------NSTWYERYKFD-IPVFHLNGQFLMMHRVNTSKLEKQ   90 (100)
T ss_dssp             EEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSST------THHHHHHSSSS-CSEEEESSSEEEESSCCHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHhhhhcceEEEeccccc------CHHHHHHhccc-CCceeecCceEEeCCCCHHHHHHH
Confidence            37899999999999999999875322 12345555442      35889999998 999999886 57888999999987


Q ss_pred             hC
Q 019491          331 SG  332 (340)
Q Consensus       331 sg  332 (340)
                      ..
T Consensus        91 L~   92 (100)
T d1wjka_          91 LR   92 (100)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=6.6e-08  Score=72.07  Aligned_cols=70  Identities=14%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA  330 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~  330 (340)
                      +++|+.+|||+|++.|++|.+.   .++|.+.+-+. +.  ...+.-++.|.+.+|+.++||+.+.|- +.|+|.++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~---~i~y~~~~i~~-~~--~~~~~~~~~g~~tvP~i~i~~~~i~Gf-~~d~i~~L   72 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR---GFDFEMINVDR-VP--EAAEALRAQGFRQLPVVIAGDLSWSGF-RPDMINRL   72 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT---TCCCEEEETTT-CH--HHHHHHHHTTCCSSCEEEETTEEEESC-CHHHHGGG
T ss_pred             EEEEeCCCCccHHHHHHHHHhc---CceeEEEeecC-CH--HHHHHHHhcCCCCCCEEEECCEEEECC-CHHHHHHH
Confidence            7899999999999999999874   35554444332 11  134556778999999999999887764 45766543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.50  E-value=5.6e-08  Score=78.90  Aligned_cols=89  Identities=17%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh----hccCc--eeECCCCCCCC---------------Ch-----hhH
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA----VKQLN--YVECFPDGYRK---------------GT-----KIA  297 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A----~~~l~--yVeC~~~g~~~---------------~~-----k~~  297 (340)
                      .|..+-.+.-+..|+|.|||||+++.+.+.+..    ...+.  .|..+......               ..     ...
T Consensus        17 ~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   96 (143)
T d2fy6a1          17 SVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGG   96 (143)
T ss_dssp             GGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTC
T ss_pred             eHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccch
Confidence            344444455577888999999998877665421    11122  23322110000               00     123


Q ss_pred             hhhhhCCCcccceeEE---CCE---EeeCCCCHHHHHHHhC
Q 019491          298 KACSDAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKASG  332 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~sg  332 (340)
                      ++.+++|++++||+.+   +|+   ++.|..+.+++.++..
T Consensus        97 ~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  137 (143)
T d2fy6a1          97 TIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIR  137 (143)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            6788999999999887   776   6889999999988764

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=98.41  E-value=1.7e-07  Score=70.48  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=52.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA  328 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La  328 (340)
                      ++++|+.+|||+|++.|+++.+. .....++|.+.+..    .+.++-+..|.+.+|..++||+.+-|-.++.+|.
T Consensus         2 ~I~iys~~~Cp~C~~ak~~L~~~-~i~y~~~di~~~~~----~~~~~~~~~g~~tvP~i~i~~~~IGG~~el~~l~   72 (82)
T d1fova_           2 NVEIYTKETCPYCHRAKALLSSK-GVSFQELPIDGNAA----KREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALD   72 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH-TCCCEEEECTTCSH----HHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeCCCCHhHHHHHHHHHHc-CCCeEEEeccchHH----HHHHHHHHhCCCCCCeEEECCEEEecHHHHHHHH
Confidence            57899999999999999999875 33455677765531    1345556679999999999999877755544443

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.34  E-value=3.4e-07  Score=74.58  Aligned_cols=87  Identities=14%  Similarity=0.194  Sum_probs=51.8

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc-cCc--eeECCCCCCCC---------------ChhhHhhhhhCCC
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYRK---------------GTKIAKACSDAKI  305 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~l~--yVeC~~~g~~~---------------~~k~~~lC~~~~I  305 (340)
                      .+++.=.+.-++.|+|.|||||+++.+...+...+ .+.  .|.-+.+..+.               ..+..++-++++|
T Consensus        25 ~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  104 (144)
T d1knga_          25 DPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGV  104 (144)
T ss_dssp             CGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTC
T ss_pred             CHHHhCCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCc
Confidence            44444445567778899999999998765442110 000  01100000000               0002367888999


Q ss_pred             cccceeEE---CCE---EeeCCCCHHHHHHH
Q 019491          306 EGFPTWVI---NGQ---VLSGEQDLSDLAKA  330 (340)
Q Consensus       306 ~GyPTw~i---nG~---~y~G~r~l~~La~~  330 (340)
                      +++||..+   +|+   ++.|..+.++|.+.
T Consensus       105 ~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~  135 (144)
T d1knga_         105 YGVPETFVVGREGTIVYKLVGPITPDNLRSV  135 (144)
T ss_dssp             CSSCEEEEECTTSBEEEEEESCCCHHHHHHT
T ss_pred             cccceEEEEcCCCeEEEEEeCCCCHHHHHHH
Confidence            99999766   675   58899999988764

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=4.9e-07  Score=72.95  Aligned_cols=71  Identities=15%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhccCc-------------------------eeECCCCCCCCChhhHhhhhhCCCc
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLN-------------------------YVECFPDGYRKGTKIAKACSDAKIE  306 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~-------------------------yVeC~~~g~~~~~k~~~lC~~~~I~  306 (340)
                      .-++.|+|.|||+|+++.|.+.+.+.+.+.                         .+--+++        ..+.++++|+
T Consensus        22 ~vvl~FwatWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~--------~~~~~~~~v~   93 (136)
T d1z5ye1          22 PVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGD--------GMLGLDLGVY   93 (136)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESS--------CHHHHHHTCC
T ss_pred             EEEEEEEcCcCCCcCccccchhhhhhhhhhhcccccccchhhhHHHHHHcCCccceeecccc--------hhHHHhcccC
Confidence            335668899999999998877653322211                         1222222        2678889999


Q ss_pred             ccceeEE---CCE---EeeCCCCHHHHHHH
Q 019491          307 GFPTWVI---NGQ---VLSGEQDLSDLAKA  330 (340)
Q Consensus       307 GyPTw~i---nG~---~y~G~r~l~~La~~  330 (340)
                      ++||..+   ||+   ++.|..+.++|.+.
T Consensus        94 ~~P~~~liD~~G~i~~~~~G~~~~~~l~~~  123 (136)
T d1z5ye1          94 GAPETFLIDGNGIIRYRHAGDLNPRVWEEE  123 (136)
T ss_dssp             SBSEEEEECTTSCEEEEEESCCCHHHHHHH
T ss_pred             CcceEEEEcCCCEEEEEEEcCCCHHHHHHH
Confidence            9998665   676   58999888877654

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1e-06  Score=73.61  Aligned_cols=89  Identities=19%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             CCCchhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhhcc-----CceeECCCCCCCCChhhHhhhhhCCCcccc
Q 019491          236 TSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFP  309 (340)
Q Consensus       236 t~S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~~~-----l~yVeC~~~g~~~~~k~~~lC~~~~I~GyP  309 (340)
                      ..+=+.+++.|++-++.=+++|+++||+.|+++++ .|..+..++     +-.+..+.+..    ...++.++++|.|||
T Consensus        28 ~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~----e~~~~~~~y~v~~~P  103 (147)
T d2dlxa1          28 KGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSE----EGQRYIQFYKLGDFP  103 (147)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSH----HHHHHHHHHTCCSSS
T ss_pred             cCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccch----hhhhhhhheecCcee
Confidence            33456777788888888899999999999999976 676554322     22344443321    236889999999999


Q ss_pred             eeEE----CCE--EeeCCCCHHHHH
Q 019491          310 TWVI----NGQ--VLSGEQDLSDLA  328 (340)
Q Consensus       310 Tw~i----nG~--~y~G~r~l~~La  328 (340)
                      |..+    +||  +.-|..+.+++.
T Consensus       104 ti~~idp~~ge~v~~~~~~~~~~fl  128 (147)
T d2dlxa1         104 YVSILDPRTGQKLVEWHQLDVSSFL  128 (147)
T ss_dssp             EEEEECTTTCCCCEEESSCCHHHHH
T ss_pred             EEEEEeCCCCeEecccCCCCHHHHH
Confidence            9776    365  345667877754

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.28  E-value=3.9e-07  Score=72.02  Aligned_cols=83  Identities=11%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCC
Q 019491          245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQ  322 (340)
Q Consensus       245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r  322 (340)
                      +-+.+++..+++|+.+|||||++.|++|.+...  ..+.++|-+.+.+.. ..+..+=+..|.+.+|..+|||+.+-|-.
T Consensus         5 v~~~i~~~~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~-~~~~~l~~~~g~~tvPqIfi~g~~IGG~~   83 (105)
T d1ktea_           5 VNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTN-EIQDYLQQLTGARTVPRVFIGKECIGGCT   83 (105)
T ss_dssp             HHHHCCTTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHH-HHHHHHHHHHSCCCSCEEEETTEEEESHH
T ss_pred             HHHHhccCCEEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccH-HHHHHHhhccCCCcCcEEEECCEEEecHH
Confidence            345677778999999999999999999987422  235577776553222 11223334468899999999999877766


Q ss_pred             CHHHHH
Q 019491          323 DLSDLA  328 (340)
Q Consensus       323 ~l~~La  328 (340)
                      ++.+|.
T Consensus        84 el~~l~   89 (105)
T d1ktea_          84 DLESMH   89 (105)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=8.1e-07  Score=71.68  Aligned_cols=88  Identities=11%  Similarity=0.156  Sum_probs=54.6

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--ccCceeECCCCCCCCC----------------hhhHhhhhhCCC
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKG----------------TKIAKACSDAKI  305 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~yVeC~~~g~~~~----------------~k~~~lC~~~~I  305 (340)
                      .++.+-.+.-++.|+|+|||+|+++.+.+.+.+.  +.+..|-...+.....                .....+++++||
T Consensus        18 ~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v   97 (134)
T d1lu4a_          18 DGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNV   97 (134)
T ss_dssp             EGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTC
T ss_pred             cHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCC
Confidence            3444434444667889999999999988866432  2232222211110000                012468899999


Q ss_pred             cccceeEE---CCE-E----eeCCCCHHHHHHHh
Q 019491          306 EGFPTWVI---NGQ-V----LSGEQDLSDLAKAS  331 (340)
Q Consensus       306 ~GyPTw~i---nG~-~----y~G~r~l~~La~~s  331 (340)
                      +++||..+   ||+ +    ..|..+.++|.+..
T Consensus        98 ~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l  131 (134)
T d1lu4a_          98 PWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRV  131 (134)
T ss_dssp             CSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHH
T ss_pred             CcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHH
Confidence            99999887   675 2    35788999888753

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.3e-07  Score=72.77  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=47.6

Q ss_pred             chhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh-h----cc--CceeECCCCCCCCChhhHhhhh-hCCCcccce
Q 019491          239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA-V----KQ--LNYVECFPDGYRKGTKIAKACS-DAKIEGFPT  310 (340)
Q Consensus       239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A-~----~~--l~yVeC~~~g~~~~~k~~~lC~-~~~I~GyPT  310 (340)
                      =+.+++.|++=.+.=+++|+|+||++|+++++.+-+.. .    ..  +-+||++.+.        +.+. .....++||
T Consensus        14 ~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~--------~~~~~~~~~~~~Pt   85 (135)
T d1sena_          14 LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP--------KDEDFSPDGGYIPR   85 (135)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC--------SCGGGCTTCSCSSE
T ss_pred             HHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCH--------HHHHHHhhccccee
Confidence            34567778887788889999999999999999663321 1    12  2367776542        2232 245567899


Q ss_pred             eEE---CCEE
Q 019491          311 WVI---NGQV  317 (340)
Q Consensus       311 w~i---nG~~  317 (340)
                      ..+   +|+.
T Consensus        86 ~~~~d~~G~~   95 (135)
T d1sena_          86 ILFLDPSGKV   95 (135)
T ss_dssp             EEEECTTSCB
T ss_pred             EEEECCCCeE
Confidence            876   6764

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=1e-06  Score=70.49  Aligned_cols=88  Identities=15%  Similarity=0.273  Sum_probs=54.2

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCC-----------------hhhHhhhhhCC
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKG-----------------TKIAKACSDAK  304 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~-----------------~k~~~lC~~~~  304 (340)
                      .+.++-.+.-++.|+|+|||+|+++.+.+.+.+.+  .+..|-...+.....                 ....++.+++|
T Consensus        19 ~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~   98 (134)
T d1zzoa1          19 HGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFG   98 (134)
T ss_dssp             EGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTT
T ss_pred             eHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcC
Confidence            34444344557788899999999998887664321  111111110000000                 00137788899


Q ss_pred             CcccceeEE---CCE--EeeCCCCHHHHHHHh
Q 019491          305 IEGFPTWVI---NGQ--VLSGEQDLSDLAKAS  331 (340)
Q Consensus       305 I~GyPTw~i---nG~--~y~G~r~l~~La~~s  331 (340)
                      ++++||..+   +|+  .+.|..+.++|.+..
T Consensus        99 v~~~P~~~iiD~~G~i~~~~g~~~~~~l~~~i  130 (134)
T d1zzoa1          99 VTQQPAYAFVDPHGNVDVVRGRMSQDELTRRV  130 (134)
T ss_dssp             CCSSSEEEEECTTCCEEEEESCCCHHHHHHHH
T ss_pred             CCccCeEEEECCCCeEEEEECCCCHHHHHHHH
Confidence            999999887   675  468999999988753

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.18  E-value=1.6e-06  Score=63.89  Aligned_cols=69  Identities=19%  Similarity=0.277  Sum_probs=50.7

Q ss_pred             cCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      ..+++|.-+|||+|++.|+++.+. .....++|.+.+.  .   ...+-+..|.+.+|..++||+.+-|-   +||.+
T Consensus         5 ~~I~iYs~~~C~~C~~ak~lL~~~-~i~~~~~~v~~~~--~---~~~~~~~~~~~tvP~i~i~g~~IGG~---~el~~   73 (74)
T d1nm3a1           5 ESISIFTKPGCPFCAKAKQLLHDK-GLSFEEIILGHDA--T---IVSVRAVSGRTTVPQVFIGGKHIGGS---DDLEK   73 (74)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHH-TCCCEEEETTTTC--C---HHHHHHHTCCSSSCEEEETTEEEESH---HHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHHc-CCCeEEEEccCcH--H---HHHHHHHhCCccCCEEEECCEEEECh---HHHhh
Confidence            358899999999999999999874 3334455555442  2   34555678999999999999887664   56655

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.15  E-value=3e-06  Score=68.83  Aligned_cols=78  Identities=18%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHh---hccCc--eeECCCCCCCCCh-------------------hhHhhhhhCCCcccc
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEA---VKQLN--YVECFPDGYRKGT-------------------KIAKACSDAKIEGFP  309 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A---~~~l~--yVeC~~~g~~~~~-------------------k~~~lC~~~~I~GyP  309 (340)
                      +.+|+|+|||||++..+.+.+..   ..++.  .|..+..+.+...                   ...++.+.++|+++|
T Consensus        33 vl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P  112 (143)
T d2b5xa1          33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVP  112 (143)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSS
T ss_pred             EEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHcCCCcCC
Confidence            55788999999999877665421   22233  3333221111100                   123578889999999


Q ss_pred             eeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          310 TWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       310 Tw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      |+.+   +|+   ++.|..+.++|.+..
T Consensus       113 ~~~~id~~G~i~~~~~G~~~~~~l~~~l  140 (143)
T d2b5xa1         113 AYYVFDKTGQLRHFQAGGSGMKMLEKRV  140 (143)
T ss_dssp             EEEEECTTCBEEEEEESCSTTHHHHHHH
T ss_pred             EEEEECCCCEEEEEEECCCCHHHHHHHH
Confidence            9776   786   678999998888753

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=3.1e-06  Score=64.00  Aligned_cols=72  Identities=15%  Similarity=0.309  Sum_probs=48.5

Q ss_pred             CeEEEccCCCHHHHHHHHHHhHHh--hccCceeEC--CCCCCCCChhhHhhhhh--CCCcccceeEECCEEeeCCCCHHH
Q 019491          253 GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVEC--FPDGYRKGTKIAKACSD--AKIEGFPTWVINGQVLSGEQDLSD  326 (340)
Q Consensus       253 g~~~YgA~WCpHC~~qk~lfgk~A--~~~l~yVeC--~~~g~~~~~k~~~lC~~--~~I~GyPTw~inG~~y~G~r~l~~  326 (340)
                      .+++|+-+|||||++.|++|.+..  .+.++|++-  +.+...    +..+-+.  .+++.+|...|||+.+-|-.++.+
T Consensus         2 kvviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el~~   77 (85)
T d1egoa_           2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT----KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAA   77 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCC----SHHHHHHTCCCSCCSCEEEETTEEEESSHHHHH
T ss_pred             EEEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHH----HHHHHHHhcCCCCCCCEEEECCEEEECHHHHHH
Confidence            368999999999999999997742  344655543  333211    2233332  356789999999998877655555


Q ss_pred             HH
Q 019491          327 LA  328 (340)
Q Consensus       327 La  328 (340)
                      +.
T Consensus        78 ~~   79 (85)
T d1egoa_          78 WV   79 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=1e-05  Score=71.38  Aligned_cols=75  Identities=9%  Similarity=-0.004  Sum_probs=51.7

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhcc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEE---eeCC-----
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---LSGE-----  321 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~---y~G~-----  321 (340)
                      ++.||++||++|+.+.+.|.+.|.+.  +.++..+.+       ...+..+++|++.||+.+  ||+.   +-|.     
T Consensus       124 vvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~-------~~~~~~~~~i~~lPtl~~yk~G~~v~~~vg~~~~~g  196 (217)
T d2trcp_         124 VVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-------NTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFA  196 (217)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-------HHTCSTTSCGGGCSEEEEEETTEEEEEETTGGGGSC
T ss_pred             EEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccc-------cchhHHhCCCCCCCeEEEEECCEEEEEEECcccccc
Confidence            56788999999999999999987543  344443322       123456789999999887  8973   3332     


Q ss_pred             --CCHHHHHHHhCCCC
Q 019491          322 --QDLSDLAKASGFPE  335 (340)
Q Consensus       322 --r~l~~La~~sg~~g  335 (340)
                        .+.++|..+..-.|
T Consensus       197 ~~~~~~~lE~~L~~~g  212 (217)
T d2trcp_         197 EDFFAADVESFLNEYG  212 (217)
T ss_dssp             SSCCHHHHHHHHHTTT
T ss_pred             ccCCHHHHHHHHHHcC
Confidence              35677777655444

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.77  E-value=2.5e-05  Score=62.46  Aligned_cols=88  Identities=13%  Similarity=0.151  Sum_probs=53.9

Q ss_pred             HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh----ccCc--eeECCCCCC---------CCC-----hhhHhhhhhC
Q 019491          244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQLN--YVECFPDGY---------RKG-----TKIAKACSDA  303 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~----~~l~--yVeC~~~g~---------~~~-----~k~~~lC~~~  303 (340)
                      .+.+...+.-+++|+|+|||||+++.+.+.+...    +.+.  .|.++.+..         +-.     ....++++.+
T Consensus        19 ~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (137)
T d1st9a_          19 ELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAY   98 (137)
T ss_dssp             EGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHT
T ss_pred             eHHHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhh
Confidence            3444344455778889999999999776654311    1122  233322110         000     0124788999


Q ss_pred             CCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491          304 KIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS  331 (340)
Q Consensus       304 ~I~GyPTw~i---nG~---~y~G~r~l~~La~~s  331 (340)
                      |+.++||..+   ||+   ++.|..+-+++.++.
T Consensus        99 ~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l  132 (137)
T d1st9a_          99 DVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM  132 (137)
T ss_dssp             TCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHH
T ss_pred             hccccceEEEECCCCEEEEEEECCCCHHHHHHHH
Confidence            9999998665   776   577998888877654

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.72  E-value=4.7e-05  Score=62.21  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491          297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s  331 (340)
                      .+..+++||+|-||.+|||+.+.|..+.++|.++.
T Consensus       136 ~~~a~~~gI~gTPt~~Ing~~~~g~~~~~~~~~~i  170 (172)
T d1z6ma1         136 IAEANAAHIQFVPTIIIGEYIFDESVTEEELRGYI  170 (172)
T ss_dssp             HHHHHHHTCCSSCEEEETTEEECTTCCHHHHHHHH
T ss_pred             HHHHHHcCCCcCCEEEECCEEecCCCCHHHHHHHH
Confidence            45567799999999999999999999999999875

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=1.8e-05  Score=65.57  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHHh
Q 019491          296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~s  331 (340)
                      ..++.++.||+|-||+++ ||+.++|.++.|+|.++.
T Consensus       110 ~~~la~~lgv~GTPt~~~~nG~~v~G~~~~e~l~~~i  146 (156)
T d1eeja1         110 HYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFL  146 (156)
T ss_dssp             HHHHHHHHTCCSSSEEECTTSCEEESCCCHHHHHHHH
T ss_pred             HHHHHHHcCCcCCCEEEEeCCeEecCCCCHHHHHHHH
Confidence            567899999999999998 999999999999998875

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.65  E-value=1.7e-05  Score=65.04  Aligned_cols=77  Identities=13%  Similarity=0.166  Sum_probs=44.8

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHH--hh---cc--CceeECCCCCCC----------------CChhhHhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE--AV---KQ--LNYVECFPDGYR----------------KGTKIAKA  299 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~--A~---~~--l~yVeC~~~g~~----------------~~~k~~~l  299 (340)
                      +.|+..=.+.=+..|+|.|||||++..+.+.+.  ..   +.  +-+|..+.+...                .......+
T Consensus        21 v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l  100 (144)
T d1i5ga_          21 IALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL  100 (144)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             eeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHH
Confidence            455555445556789999999999887765442  11   11  224444322100                00002347


Q ss_pred             hhhCCCcccceeEE---C-CEEee
Q 019491          300 CSDAKIEGFPTWVI---N-GQVLS  319 (340)
Q Consensus       300 C~~~~I~GyPTw~i---n-G~~y~  319 (340)
                      .++++|+|+||.++   + |+.+.
T Consensus       101 ~~~y~v~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         101 TTGFDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             HHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             HHHCCCCCcCEEEEEeCCCCEEEe
Confidence            88899999999665   3 66554

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=97.60  E-value=2.3e-05  Score=63.65  Aligned_cols=71  Identities=14%  Similarity=0.258  Sum_probs=41.7

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h---ccCc--eeECCCCCCC----------------CChhhHhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V---KQLN--YVECFPDGYR----------------KGTKIAKA  299 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~---~~l~--yVeC~~~g~~----------------~~~k~~~l  299 (340)
                      +.|++.-.+.-+..|+|.|||||+++.+.+.+..  .   +.+.  .|..+.+...                ......++
T Consensus        21 v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  100 (144)
T d1o73a_          21 VSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL  100 (144)
T ss_dssp             BCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             EeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHH
Confidence            4566554466677899999999999887664421  1   1121  2222211100                00012357


Q ss_pred             hhhCCCcccceeEE
Q 019491          300 CSDAKIEGFPTWVI  313 (340)
Q Consensus       300 C~~~~I~GyPTw~i  313 (340)
                      .++++|+|+||..+
T Consensus       101 ~~~y~v~~~Pt~~l  114 (144)
T d1o73a_         101 GKTFGVESIPTLIT  114 (144)
T ss_dssp             HHHHTCCSSSEEEE
T ss_pred             HHHcCCCcCCEEEE
Confidence            88899999999775

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.21  E-value=0.00023  Score=58.40  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHHh
Q 019491          296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKAS  331 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~s  331 (340)
                      ..++.++.||+|-||+++ ||+.++|-++.++|.++.
T Consensus       110 ~~~la~~lGv~GTPt~~~~nG~~i~G~~~~~~l~~~l  146 (150)
T d1t3ba1         110 HYELGIQFGVRGTPSIVTSTGELIGGYLKPADLLRAL  146 (150)
T ss_dssp             HHHHHHHHTCCSSCEEECTTSCCCCSCCCHHHHHHHH
T ss_pred             HHHHHHhcCcCCCCEEEEcCCcEecCCCCHHHHHHHH
Confidence            457789999999999999 999999999999999875

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.17  E-value=0.00022  Score=57.01  Aligned_cols=71  Identities=10%  Similarity=0.101  Sum_probs=41.0

Q ss_pred             HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh---c--cCc--eeECCCCCC--------CCC--------hhhHhh
Q 019491          243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---K--QLN--YVECFPDGY--------RKG--------TKIAKA  299 (340)
Q Consensus       243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~--~l~--yVeC~~~g~--------~~~--------~k~~~l  299 (340)
                      +.+...-.+.-+..|+|.|||+|+++.+.+.+.+.   .  .+.  .|.-+.+..        .+.        ....++
T Consensus        19 v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l   98 (144)
T d1o8xa_          19 VEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL   98 (144)
T ss_dssp             EEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred             EeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhH
Confidence            33443334455778999999999999876544221   1  122  333332100        000        012467


Q ss_pred             hhhCCCcccceeEE
Q 019491          300 CSDAKIEGFPTWVI  313 (340)
Q Consensus       300 C~~~~I~GyPTw~i  313 (340)
                      .+.++|+++||.++
T Consensus        99 ~~~y~v~~~Pt~~l  112 (144)
T d1o8xa_          99 SKHFNVESIPTLIG  112 (144)
T ss_dssp             HHHTTCCSSSEEEE
T ss_pred             HHHcCCCcCCEEEE
Confidence            88899999999776

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.10  E-value=0.00054  Score=50.90  Aligned_cols=70  Identities=16%  Similarity=0.031  Sum_probs=53.4

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECC-EEeeCCCCHHHHHHHhC
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-QVLSGEQDLSDLAKASG  332 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG-~~y~G~r~l~~La~~sg  332 (340)
                      +.+|+-++|+.|.+.|+.+.+.....+..||.+.|        .++-.+++.+ .|...++| +...-..+.++|.++.+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~~~~~~~~~vdI~~d--------~~l~~~y~~~-IPVl~~~~~~~l~w~fd~~~l~~~L~   72 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDD--------AALESAYGLR-VPVLRDPMGRELDWPFDAPRLRAWLD   72 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTC--------HHHHHHHTTT-CSEEECTTCCEEESCCCHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHhccCCcEEEEEccCC--------HHHHHHhCCe-eeEEEECCeeEEcCccCHHHHHHHHh
Confidence            57899999999999999876533334667887754        3667788877 79999965 45566679999999875

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.93  E-value=0.00017  Score=59.85  Aligned_cols=56  Identities=11%  Similarity=0.197  Sum_probs=37.4

Q ss_pred             cccCeEEEccCCCHHHHHHHHHHhHHhhc----cCceeECCCCCCCCChhhHhhhhhC---CCcccceeEE
Q 019491          250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECFPDGYRKGTKIAKACSDA---KIEGFPTWVI  313 (340)
Q Consensus       250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~yVeC~~~g~~~~~k~~~lC~~~---~I~GyPTw~i  313 (340)
                      ++..++.|+|+|||+|++..|.+.+-+.+    .+.+|+-+.+        .+..+++   +...+|+..+
T Consensus        54 ~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~--------~~~~~~~~~~~~~~~p~~~~  116 (166)
T d1z6na1          54 RRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRA--------EDDLRQRLALERIAIPLVLV  116 (166)
T ss_dssp             SCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHH--------HHHTTTTTTCSSCCSSEEEE
T ss_pred             CCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccC--------HHHHHHHHHhccccccceee
Confidence            34457789999999999999998775422    2445655432        2334444   6667888776

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00013  Score=57.87  Aligned_cols=81  Identities=10%  Similarity=0.143  Sum_probs=58.8

Q ss_pred             HHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491          244 SLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL  318 (340)
Q Consensus       244 ~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y  318 (340)
                      .+-+-+++..+++|.-     |.||.|++.|++|.+. .....++|.+.+..    -+..+.+..+-+.+|-.+|||+.+
T Consensus         7 ~i~~~i~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~-~i~~~~~~v~~~~~----~~~~l~~~t~~~TvPqIFi~g~~I   81 (109)
T d1wika_           7 GLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNST-GVEYETFDILEDEE----VRQGLKTFSNWPTYPQLYVRGDLV   81 (109)
T ss_dssp             CHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHT-CSCEEEEESSSCHH----HHHHHHHHHSCCSSCEEECSSSEE
T ss_pred             HHHHHHhcCCEEEEeCCCCCCCCChHHHHHHHHHHhc-CCCceEEEecccHH----HHHHHHHhcCCCCCCeEEECCEEE
Confidence            3455667788999943     8999999999999763 33344567665421    245667778889999999999988


Q ss_pred             eCCCCHHHHHH
Q 019491          319 SGEQDLSDLAK  329 (340)
Q Consensus       319 ~G~r~l~~La~  329 (340)
                      -|-.++.+|.+
T Consensus        82 GG~ddl~~l~~   92 (109)
T d1wika_          82 GGLDIVKELKD   92 (109)
T ss_dssp             ECHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            77766665543

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=96.77  E-value=0.0017  Score=53.66  Aligned_cols=33  Identities=15%  Similarity=0.221  Sum_probs=24.7

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk  274 (340)
                      .+.|+..-.+.-+.+|+|+|||+|+.+.+.+.+
T Consensus        48 ~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~   80 (176)
T d1jfua_          48 PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDE   80 (176)
T ss_dssp             EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEeHHHhCCCEEEEEeccCcccchHHHHHhhhh
Confidence            345666655666778889999999998776654

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.73  E-value=0.0012  Score=49.79  Aligned_cols=71  Identities=18%  Similarity=0.320  Sum_probs=42.8

Q ss_pred             eEEEccCC----CHHHHHHHHHHhHHhhccCceeECCCCCCCCChh-hHhhhh-----hCCCcccceeEE-CCEEeeCCC
Q 019491          254 AKMYGAFW----CSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTK-IAKACS-----DAKIEGFPTWVI-NGQVLSGEQ  322 (340)
Q Consensus       254 ~~~YgA~W----CpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k-~~~lC~-----~~~I~GyPTw~i-nG~~y~G~r  322 (340)
                      ++.||...    ||+|++.|+++.+. .....+++++.+....+.. ..++-+     ..+.+.+|...| ||+.+-|-.
T Consensus         2 ~~Iy~~~~~~~~C~~C~~AK~lL~~~-~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~d   80 (87)
T d1abaa_           2 FKVYGYDSNIHKCGPCDNAKRLLTVK-KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD   80 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT-TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHH
T ss_pred             EEEEEeCCCCCCChhHHHHHHHHHHc-CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECHH
Confidence            46788776    99999999999874 2233456665442211110 111111     246788999999 687665544


Q ss_pred             CHH
Q 019491          323 DLS  325 (340)
Q Consensus       323 ~l~  325 (340)
                      +|.
T Consensus        81 el~   83 (87)
T d1abaa_          81 QLR   83 (87)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.0009  Score=56.88  Aligned_cols=80  Identities=10%  Similarity=0.103  Sum_probs=46.8

Q ss_pred             HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCC---CCCCCC--------------------hh
Q 019491          242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFP---DGYRKG--------------------TK  295 (340)
Q Consensus       242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~---~g~~~~--------------------~k  295 (340)
                      .+.|++.-.+.-+++|.|.|||.|++..+.+.+.+.   .++.+|=...   +.....                    .+
T Consensus        24 ~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~  103 (187)
T d2cvba1          24 RYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDE  103 (187)
T ss_dssp             EEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECS
T ss_pred             EEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeech
Confidence            346666544555678999999999988766554321   1122211110   000000                    01


Q ss_pred             hHhhhhhCCCcccceeEE---CCE-EeeCC
Q 019491          296 IAKACSDAKIEGFPTWVI---NGQ-VLSGE  321 (340)
Q Consensus       296 ~~~lC~~~~I~GyPTw~i---nG~-~y~G~  321 (340)
                      ..++.++++++++||-++   +|+ +|.|.
T Consensus       104 ~~~~~~~~~v~~~P~~~liD~~G~i~y~G~  133 (187)
T d2cvba1         104 TQEVAKAYRALRTPEVFLFDERRLLRYHGR  133 (187)
T ss_dssp             SSHHHHHTTCCEESEEEEECTTCBEEEEEC
T ss_pred             hhhhcccccccceeeEEEEcCCCeEEEEee
Confidence            247889999999998665   566 68775

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0043  Score=51.41  Aligned_cols=36  Identities=22%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             HhhhhhCCCcccceeEE-C--C--EEeeCCCCHHHHHHHhC
Q 019491          297 AKACSDAKIEGFPTWVI-N--G--QVLSGEQDLSDLAKASG  332 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~i-n--G--~~y~G~r~l~~La~~sg  332 (340)
                      .++.++.||+|-||.++ |  |  +++.|..+.++|.++.|
T Consensus       128 ~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il~  168 (169)
T d1v58a1         128 EKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMG  168 (169)
T ss_dssp             HHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTT
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhc
Confidence            35667789999999998 3  3  47999999999999876

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=96.58  E-value=0.0026  Score=51.44  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             HhhhhhCCCcccceeEECCEE---eeCCCCHHHHHHHhC
Q 019491          297 AKACSDAKIEGFPTWVINGQV---LSGEQDLSDLAKASG  332 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~~---y~G~r~l~~La~~sg  332 (340)
                      .+..++.||+|.||.+|||+.   ..|..+.++|.+...
T Consensus       137 ~~~~~~~gi~gTPt~~InGk~~v~~~~~~~~~~l~~~i~  175 (181)
T d1beda_         137 DKQFQDSGLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVN  175 (181)
T ss_dssp             HHHHHHHTCCSSSEEEETTTEEECGGGCCSHHHHHHHHH
T ss_pred             HHHHHHhCCccccEEEECCEEeeCCCCCCCHHHHHHHHH
Confidence            455678999999999999984   477788888887653

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.27  E-value=0.0026  Score=47.68  Aligned_cols=69  Identities=14%  Similarity=0.352  Sum_probs=48.9

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhc-cCc-eeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCCC-CHHHHHH
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVK-QLN-YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQ-DLSDLAK  329 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~-~l~-yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~r-~l~~La~  329 (340)
                      ++.|| +.|++|+++.+.-.+.+.+ .++ .|+=-.|       ..++ .++||-+.|.+.|||+ .+.|.. +.+++.+
T Consensus         4 IkVlg-~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~d-------~~ei-~~ygVmstPalvIdg~vv~~G~vPs~~ei~~   74 (77)
T d1iloa_           4 IQIYG-TGCANCQMLEKNAREAVKELGIDAEFEKIKE-------MDQI-LEAGLTALPGLAVDGELKIMGRVASKEEIKK   74 (77)
T ss_dssp             EEEEC-SSSSTTHHHHHHHHHHHHHTTCCEEEEEECS-------HHHH-HHHTCSSSSCEEETTEEEECSSCCCHHHHHH
T ss_pred             EEEeC-CCCccHHHHHHHHHHHHHHcCCceEEEEeCC-------HHHH-HHcCCcCCCEEEECCEEEEEecCCCHHHHHH
Confidence            56785 7999999999988764322 121 1211112       3454 4699999999999999 688854 9999998


Q ss_pred             Hh
Q 019491          330 AS  331 (340)
Q Consensus       330 ~s  331 (340)
                      +.
T Consensus        75 ~L   76 (77)
T d1iloa_          75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            75

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.79  E-value=0.017  Score=43.42  Aligned_cols=73  Identities=12%  Similarity=0.057  Sum_probs=50.0

Q ss_pred             cCeEEEccCCC------HHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhh--CCCcccceeEECCEEeeCCCC
Q 019491          252 IGAKMYGAFWC------SHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD--AKIEGFPTWVINGQVLSGEQD  323 (340)
Q Consensus       252 ~g~~~YgA~WC------pHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~--~~I~GyPTw~inG~~y~G~r~  323 (340)
                      .+++.|.+.||      ++|.+.|.++... .....+||.+.|...    +..+=+.  .+.+-+|-.++||+-.-|-.+
T Consensus         2 ~~i~vy~ts~~~~~~~~~~~~r~~~lL~~~-~I~y~~iDi~~d~~~----~~~~~~~~g~~~~t~Pqifv~~~~iGg~de   76 (93)
T d1t1va_           2 SGLRVYSTSVTGSREIKSQQSEVTRILDGK-RIQYQLVDISQDNAL----RDEMRTLAGNPKATPPQIVNGNHYCGDYEL   76 (93)
T ss_dssp             CCEEEEECSSCSCHHHHHHHHHHHHHHHHT-TCCCEEEETTSCHHH----HHHHHHHTTCTTCCSCEEEETTEEEEEHHH
T ss_pred             CCEEEEEccCcCChhhHHHHHHHHHHHHHC-CCceEEEEecCchhH----HHHHHHhccCCCceeEEEEECCEEEecHHH
Confidence            46899999999      5999999999874 333456777665321    1222222  245578999999987777666


Q ss_pred             HHHHHH
Q 019491          324 LSDLAK  329 (340)
Q Consensus       324 l~~La~  329 (340)
                      ++++.+
T Consensus        77 l~~~~e   82 (93)
T d1t1va_          77 FVEAVE   82 (93)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.70  E-value=0.057  Score=42.95  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=22.6

Q ss_pred             hHHHHHHhhcc--cCeEEEc-cCCCHHHHHHHHHHhH
Q 019491          241 FALSLAKHLHA--IGAKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       241 ~~~~la~~L~~--~g~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      ..+.|++.+.+  .-+.+|+ +.|||+|.++.+.+.+
T Consensus        19 ~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~   55 (160)
T d2cx4a1          19 EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRD   55 (160)
T ss_dssp             CCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHH
T ss_pred             CEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhc
Confidence            34567766543  2344555 8999999998776654

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.42  E-value=0.039  Score=44.69  Aligned_cols=33  Identities=15%  Similarity=0.041  Sum_probs=22.8

Q ss_pred             HHHHHHhhcccC-eEEE-c-cCCCHHHHHHHHHHhH
Q 019491          242 ALSLAKHLHAIG-AKMY-G-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       242 ~~~la~~L~~~g-~~~Y-g-A~WCpHC~~qk~lfgk  274 (340)
                      .+.|++.+.+.. +++| + +.|||+|.+|.+.|.+
T Consensus        23 ~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~   58 (156)
T d2a4va1          23 SISLKKITENNRVVVFFVYPRASTPGSTRQASGFRD   58 (156)
T ss_dssp             EEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEeeHHHcCCccEEEEEecccccCcchhhhhHHHHH
Confidence            466777665544 3334 3 7899999999877754

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.3  Score=34.80  Aligned_cols=58  Identities=16%  Similarity=0.259  Sum_probs=41.3

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE-CCEEe
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVL  318 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-nG~~y  318 (340)
                      +|.|+-+.||.|++.+-.+.+. ......+++..+.      ..+.-+..+-.-.|+++. ||+..
T Consensus         1 mkLY~~~~cP~~~rvr~~l~~k-gi~~e~~~~~~~~------~~~~~~~~p~~~VP~L~~~dg~~i   59 (75)
T d1g7oa2           1 MKLYIYDHCPYCLKARMIFGLK-NIPVELHVLLNDD------AETPTRMVGQKQVPILQKDDSRYM   59 (75)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHH-TCCCEEEECCTTT------THHHHHHHSSSCCCEEEETTTEEE
T ss_pred             CEEEccCCCCchHHHHHHHHHh-CCCcccccccccc------hHHHHHhCCCCceEEEEEcCCCEE
Confidence            4689999999999999888763 2234456665442      245556678888999998 67743

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.72  E-value=0.43  Score=37.54  Aligned_cols=74  Identities=16%  Similarity=0.144  Sum_probs=47.3

Q ss_pred             HHhhccc-CeEEEcc-CCCHHHHHHHHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC----
Q 019491          246 AKHLHAI-GAKMYGA-FWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----  315 (340)
Q Consensus       246 a~~L~~~-g~~~YgA-~WCpHC~~qk~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG----  315 (340)
                      .++|++. -++.|-. .-|+.|++++++..+-|.  .+|.+.+-+.+.    .+..+++++++|+..||..|  +|    
T Consensus        17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~----~e~~~~~~~~~ver~Ps~~i~~~g~~~g   92 (119)
T d1a8la1          17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDT----PEGKELAKRYRIDRAPATTITQDGKDFG   92 (119)
T ss_dssp             GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTS----HHHHHHHHHTTCCSSSEEEEEETTBCCS
T ss_pred             HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCc----chhhhHHHhhccccCceEEEecCCcccc
Confidence            4444443 3556633 469999999998887542  334333222221    12468899999999999988  54    


Q ss_pred             EEeeCCCC
Q 019491          316 QVLSGEQD  323 (340)
Q Consensus       316 ~~y~G~r~  323 (340)
                      -+|.|.=.
T Consensus        93 IrF~GiP~  100 (119)
T d1a8la1          93 VRYFGLPA  100 (119)
T ss_dssp             EEEESCCC
T ss_pred             eEEEeccC
Confidence            37777644

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=87.32  E-value=1.1  Score=32.54  Aligned_cols=80  Identities=9%  Similarity=-0.008  Sum_probs=49.0

Q ss_pred             ccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCc-ccceeEECCEEeeCCCCHHHHHH
Q 019491          251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQVLSGEQDLSDLAK  329 (340)
Q Consensus       251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~-GyPTw~inG~~y~G~r~l~~La~  329 (340)
                      +..++.|+.+.||.|++.+-.+... .....+++-+..  ++   ....-+..-.. -.|+++.||+.+..   -..+.+
T Consensus         3 ~~~l~Ly~~~~Sp~~~rvr~~L~~k-gi~~e~~~v~~~--~~---~~~~~~~nP~~g~vP~L~~~g~~l~e---S~~I~~   73 (84)
T d1oyja2           3 EKELVLLDFWVSPFGQRCRIAMAEK-GLEFEYREEDLG--NK---SDLLLRSNPVHRKIPVLLHAGRPVSE---SLVILQ   73 (84)
T ss_dssp             SCCEEEEECTTCHHHHHHHHHHHHH-TCCCEEEECCTT--SC---CHHHHHHSTTTCCSCEEEETTEEEES---HHHHHH
T ss_pred             CCceEEEcCCCChHHHHHHHHHHHc-CCCcEEEEEccC--cC---CHHHHhhCCCcCcccEEEECCceEEc---HHHHHH
Confidence            4568899999999999988766552 223345555443  22   23444444443 48999989986543   345555


Q ss_pred             HhCCCCCCCC
Q 019491          330 ASGFPEMSQP  339 (340)
Q Consensus       330 ~sg~~g~~~~  339 (340)
                      +..-+.|+.|
T Consensus        74 YL~e~~P~~P   83 (84)
T d1oyja2          74 YLDDAFPGTP   83 (84)
T ss_dssp             HHHHHCTTSC
T ss_pred             HHHHHCCCCC
Confidence            5554455444

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.32  E-value=0.21  Score=39.44  Aligned_cols=32  Identities=9%  Similarity=0.122  Sum_probs=21.9

Q ss_pred             HHHHHhhcccCeE--EEccCCCHHHHHHHHHHhH
Q 019491          243 LSLAKHLHAIGAK--MYGAFWCSHCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g~~--~YgA~WCpHC~~qk~lfgk  274 (340)
                      +.|++...+..++  +|.+.|||+|.++.+.|.+
T Consensus        21 ~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~   54 (153)
T d1xvwa1          21 VTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRD   54 (153)
T ss_dssp             EEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHH
T ss_pred             EeHHHHcCCCcEEEEecccccccchhhhhhhhhh
Confidence            4566666554444  4558999999998776654

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=84.82  E-value=0.24  Score=39.69  Aligned_cols=20  Identities=35%  Similarity=0.762  Sum_probs=17.3

Q ss_pred             HhhhhhCCCcccceeEECCE
Q 019491          297 AKACSDAKIEGFPTWVINGQ  316 (340)
Q Consensus       297 ~~lC~~~~I~GyPTw~inG~  316 (340)
                      .+..++.||+|.||++||||
T Consensus       139 ~~~a~~~gI~gTPt~vInGk  158 (188)
T d1fvka_         139 EKAAADVQLRGVPAMFVNGK  158 (188)
T ss_dssp             HHHHHHTTCCSSSEEEETTT
T ss_pred             HHHHHHcCCccccEEEECCE
Confidence            45567899999999999997

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.54  E-value=0.76  Score=37.18  Aligned_cols=42  Identities=26%  Similarity=0.192  Sum_probs=34.3

Q ss_pred             hhhhhCCCcccceeEECC----EEeeCCCCHHHHHHHhCCC--CCCCC
Q 019491          298 KACSDAKIEGFPTWVING----QVLSGEQDLSDLAKASGFP--EMSQP  339 (340)
Q Consensus       298 ~lC~~~~I~GyPTw~inG----~~y~G~r~l~~La~~sg~~--g~~~~  339 (340)
                      +...+.||.|.||+++|+    +.+-|..-++-|+++.|-+  ||+-|
T Consensus       172 ~~A~~~GvfGvPtfvi~~~~~~e~f~G~Drl~~l~~~L~~~~~~p~~~  219 (221)
T d1r4wa_         172 GAACKYGAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGEKWMGPVPP  219 (221)
T ss_dssp             HHHHHTTCCSSCEEEEEETTEEEEEESTTCHHHHHHHHTCCCCCSSCC
T ss_pred             HHHHHCCCeECCEEEEccCCCcceeecccCHHHHHHHHhcccCCCCCC
Confidence            557789999999999963    5799999999999999875  45444

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=82.34  E-value=0.16  Score=41.18  Aligned_cols=36  Identities=8%  Similarity=-0.001  Sum_probs=25.3

Q ss_pred             hhHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHH
Q 019491          240 PFALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSE  275 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~  275 (340)
                      -..+.|+++..+.-+..|+ +.|||+|..|.+.|.+.
T Consensus        32 g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~   68 (164)
T d1q98a_          32 LADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQ   68 (164)
T ss_dssp             SCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHH
T ss_pred             CCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHH
Confidence            3456777776555555455 77999999998877663

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=82.05  E-value=0.31  Score=40.95  Aligned_cols=22  Identities=18%  Similarity=0.570  Sum_probs=18.2

Q ss_pred             cCeEEEccCCCHHHHHHHHHHh
Q 019491          252 IGAKMYGAFWCSHCLEQKQMFG  273 (340)
Q Consensus       252 ~g~~~YgA~WCpHC~~qk~lfg  273 (340)
                      ..++.|+-++||||.+..+.+.
T Consensus       115 ~~VvEffsy~Cp~C~~~e~~l~  136 (195)
T d1un2a_         115 PQVLEFFSFFCPHCYQFEEVLH  136 (195)
T ss_dssp             CSEEEEECTTCHHHHHHHHTSC
T ss_pred             ceEEEEEecCCccccccchhhh
Confidence            3477888999999999998765

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.92  E-value=1.1  Score=38.81  Aligned_cols=32  Identities=19%  Similarity=0.273  Sum_probs=20.5

Q ss_pred             HHHHHhhcccC---eEEEc-cCCCHHHHHHHHHHhH
Q 019491          243 LSLAKHLHAIG---AKMYG-AFWCSHCLEQKQMFGS  274 (340)
Q Consensus       243 ~~la~~L~~~g---~~~Yg-A~WCpHC~~qk~lfgk  274 (340)
                      +.+..++...|   +.+|+ +.|||+|..+...|.+
T Consensus        19 i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~   54 (237)
T d2zcta1          19 IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFAR   54 (237)
T ss_dssp             EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHH
T ss_pred             EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHh
Confidence            34445543333   44555 9999999998776654

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=81.07  E-value=0.15  Score=41.45  Aligned_cols=37  Identities=11%  Similarity=-0.015  Sum_probs=25.8

Q ss_pred             hhHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh
Q 019491          240 PFALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA  276 (340)
Q Consensus       240 ~~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A  276 (340)
                      -..+.|++...+.-+..|+ +.|||+|.+|.+.|.+.+
T Consensus        34 g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~   71 (164)
T d1qxha_          34 LSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLA   71 (164)
T ss_dssp             SCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHH
T ss_pred             CCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHH
Confidence            3455777765555455444 779999999988886654

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=80.35  E-value=2.5  Score=29.92  Aligned_cols=61  Identities=16%  Similarity=0.175  Sum_probs=38.0

Q ss_pred             eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCC-CCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491          254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL  318 (340)
Q Consensus       254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~-g~~~~~k~~~lC~~~~I~GyPTw~inG~~y  318 (340)
                      ++.|+.+.||+|++..-.+.+. ......++.+.. +.++   ..+.-+..--.-.|+++.||...
T Consensus         3 m~Ly~~~~sp~~~~v~~~l~e~-gi~~e~~~v~~~~~~~~---~~~~~~~nP~g~vP~L~~~~~~l   64 (81)
T d1aw9a2           3 LKLYGMPLSPNVVRVATVLNEK-GLDFEIVPVDLTTGAHK---QPDFLALNPFGQIPALVDGDEVL   64 (81)
T ss_dssp             EEEESCTTCHHHHHHHHHHHHT-TCCEEEECCCSSTTSSC---CCSGGGTCTTCCSCEEEETTEEE
T ss_pred             EEEEeCCCChhHHHHHHHHHhc-CCCCEEEEecCCCcchh---hHHHHHHhhcCeeEEEEECCcEE
Confidence            6899999999999988777653 222333444322 2122   22334444455699999888754