Citrus Sinensis ID: 019494

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MFYIWPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ
Secondary Structure (PSIPRED)
cccEEcccccccccccccHHHHHHHHcccccEEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHccccccccccEEEEEEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccccHHHHHHHHcccccEEEEEEEccccccEEEEEEccHHHHHHHHHHHcccccEcccccccccccEEEEEEccccEcEccccccccHHcccccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHcccccEEEEEEEEcccccEEEEEEccHHHHHHHHHHHcccccccccEEEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfyiwplsRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVqfsdtetassaknaldgrsipryllpenmgpctlritySAHTDLsvkfqshrsrdytnpylpvapsaidasgqlsvgldgkklepeSNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDkngglqaliqypDVQTAVVAKEALeghciydggfcklhisysrhtdlsikvnndrsrdytlpstpmvnsqpsilgqqpvpmvgatanqyngaqfappppeqpmmhqptaagwgavppasqsmpmmgnhpymppgsmpmgpgmmqmhmpgqsgmqhhhgamppprpdhmq
Flexible Loop (DISEMBL)
mfyiwplsRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTetassaknaldgrsiprylLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ
Low Complexity Region (SEG)
MFYIWPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAppppeqpmmhqpTAAGWGAVPPASQSMPMMGNhpymppgsmpmgpgmmqmhmpgqsgmqhhhgAMPPPRPDHMQ
Disordered region (IsUnstruct)
*FYIWPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFS**************RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHR*RDYTNPYLPVA**********************SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKV**********************************************************************************************************************
Disordered Region (DISOPRED)
*FYIWPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS*************************************************VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN********************************************************************************************************************
Disordered Region (DISEMBL)
MFYIWPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPG********************
Disordered Region (DISPRO)
MFYIWPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKF*************************************ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQM************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFYIWPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q9FGL9	429	Polypyrimidine tract-bind	no	no	0.588	0.466	0.884	1e-108
Q9MAC5	399	Polypyrimidine tract-bind	no	no	0.755	0.644	0.615	1e-93
Q29099	557	Polypyrimidine tract-bind	yes	no	0.405	0.247	0.465	1e-23
P17225	527	Polypyrimidine tract-bind	no	no	0.341	0.220	0.495	4e-23
Q00438	555	Polypyrimidine tract-bind	yes	no	0.341	0.209	0.495	4e-23
Q8WN55	531	Polypyrimidine tract-bind	yes	no	0.341	0.218	0.495	5e-23
P26599	531	Polypyrimidine tract-bind	yes	no	0.341	0.218	0.495	5e-23
Q66H20	531	Polypyrimidine tract-bind	no	no	0.45	0.288	0.401	1e-22
Q91Z31	531	Polypyrimidine tract-bind	no	no	0.45	0.288	0.401	1e-22
Q6ICX4	432	Polypyrimidine tract-bind	no	no	0.511	0.402	0.358	2e-22

>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/207 (88%), Positives = 200/207 (96%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAG+QALVQF+D ETA++AK ALDGRSIPRYLL E +G C+L+I
Sbjct: 133 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKI 192

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           TYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+EPESNVLLASIEN
Sbjct: 193 TYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIEN 252

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGG 312

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYT 231
           FCKLHI+YSRHTDLSIKVNNDRSRDYT
Sbjct: 313 FCKLHITYSRHTDLSIKVNNDRSRDYT 339

Plays a role in pre-mRNA splicing. Binds to the polypyrimidine tract of introns. May promote the binding of U2 snRNP to pre-mRNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1

 Score =  343 bits (880), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/286 (61%), Positives = 207/286 (72%), Gaps = 29/286 (10%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL  ++G C+LR+
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRM 191

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           +YSAHTDL++KFQSHRSRDYTNPYLPV  +A+D S Q ++G DGKK+E +SNVLL  IEN
Sbjct: 192 SYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIEN 251

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVT+DVLH VFSA+G VQKIA+F+KNG  QALIQY D+ TA +AKEALEGHCIYDGG
Sbjct: 252 MQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGG 311

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           +CKL +SYSRHTDL++K  +D+SRDYTLP         S+L  Q  P V  +A       
Sbjct: 312 YCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL-------SLLVAQKGPAVSGSA------- 357

Query: 265 FAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMG 310
               PP          AGW   P A       G  PYM P S P G
Sbjct: 358 ----PP----------AGWQN-PQAQSQYSGYGGSPYMYPSSDPNG 388

Plays a role in pre-mRNA splicing. Binds to the polypyrimidine tract of introns. May promote the binding of U2 snRNP to pre-mRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)

Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187
           G  +  +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233

Query: 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 247
           A  AK +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P  ++QPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQ 291

Query: 248 QPVPMVGA----TANQYNGAQFAP 267
                 GA    +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Sus scrofa (taxid: 9823)

>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187
           G  +  +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232

Query: 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
           A  AK +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P  +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Mus musculus (taxid: 10090)

>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187
           G  +  +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232

Query: 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
           A  AK +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P  +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Rattus norvegicus (taxid: 10116)

>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187
           G  +  +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233

Query: 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
           A  AK +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P  +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Bos taurus (taxid: 9913)

>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187
           G  +  +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233

Query: 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
           A  AK +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P  +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Homo sapiens (taxid: 9606)

>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP------ESNV 137
           I YS H +L       ++ +  N    V   A+ A    +  L G  +        +S V
Sbjct: 128 IQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPV 180

Query: 138 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 197
           L   I+NM Y VTLDVLH +FS FG V KI  F KN   QAL+QY D   A  AK AL+G
Sbjct: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDG 240

Query: 198 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
             IY+   C L I +S+  +L++K NND+SRDYT P  P  + QP++
Sbjct: 241 QNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation.

Rattus norvegicus (taxid: 10116)

>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP------ESNV 137
           I YS H +L       ++ +  N    V   A+ A    +  L G  +        +S V
Sbjct: 128 IQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPV 180

Query: 138 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 197
           L   I+NM Y VTLDVLH +FS FG V KI  F KN   QAL+QY D   A  AK AL+G
Sbjct: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDG 240

Query: 198 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
             IY+   C L I +S+  +L++K NND+SRDYT P  P  + QP++
Sbjct: 241 QNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation.

Mus musculus (taxid: 10090)

>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 110/212 (51%), Gaps = 38/212 (17%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           +F  FG + K+      A  QAL+Q  D  +A SA                N+ P T+R 
Sbjct: 25  LFQPFGVITKLVMLR--AKNQALLQMQDVSSAVSALQFF-----------TNVQP-TIR- 69

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
                 ++ V+F SH+             + I+ +      + G++ EP + +LL +I +
Sbjct: 70  ----GRNVYVQFSSHQE-----------LTTIEQN------IHGREDEP-NRILLVTIHH 107

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           M Y +T+DVLH VFS +G V+K+  F K+ G QALIQY   Q A  A+ AL+G  IYDG 
Sbjct: 108 MLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGC 167

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 236
            C+L I +S   +L +  NNDRSRDYT P+ P
Sbjct: 168 -CQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198

Plays a role in pre-mRNA splicing. Binds to the polypyrimidine tract of introns. May promote the binding of U2 snRNP to pre-mRNA.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
255545042	447	polypyrimidine tract binding protein, pu	0.914	0.695	0.825	1e-142
118488039	442	unknown [Populus trichocarpa]	0.902	0.694	0.789	1e-134
224135279	447	predicted protein [Populus trichocarpa]	0.917	0.697	0.774	1e-132
359490453	446	PREDICTED: polypyrimidine tract-binding	0.891	0.679	0.757	1e-131
147804914	755	hypothetical protein VITISV_013673 [Viti	0.891	0.401	0.757	1e-131
356509289	433	PREDICTED: polypyrimidine tract-binding	0.802	0.630	0.806	1e-131
357463843	828	Polypyrimidine tract-binding protein-lik	0.897	0.368	0.768	1e-130
356516021	432	PREDICTED: polypyrimidine tract-binding	0.802	0.631	0.795	1e-130
449456492	776	PREDICTED: polypyrimidine tract-binding	0.908	0.398	0.756	1e-129
363807178	428	uncharacterized protein LOC100810102 [Gl	0.838	0.665	0.798	1e-128

>gi|255545042|ref|XP_002513582.1| polypyrimidine tract binding protein, putative [Ricinus communis] gi|223547490|gb|EEF48985.1| polypyrimidine tract binding protein, putative [Ricinus communis]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/320 (82%), Positives = 278/320 (86%), Gaps = 9/320 (2%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD ETASSAKNALDGR+IPRYLLPE++GPCTLRI
Sbjct: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPRYLLPEHIGPCTLRI 192

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           TYSAHTDLSVKFQSHRSRDYTNP LPVAPSAID SG  +VGLDGKKLEPESNVLLASIEN
Sbjct: 193 TYSAHTDLSVKFQSHRSRDYTNPNLPVAPSAIDGSGMFTVGLDGKKLEPESNVLLASIEN 252

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           FCKLHISYSRH+DLSIKVNNDRSRDYT+P+  MVN QPSILGQQPVP VG  A+ Y+GAQ
Sbjct: 313 FCKLHISYSRHSDLSIKVNNDRSRDYTIPNPAMVNPQPSILGQQPVPTVGPPAHPYSGAQ 372

Query: 265 FAPPPPEQPMMHQPTAAGWGAVPPASQSM-PMMGNHPYMPPGSMP--MGPGMMQMHMPGQ 321
           FA P  E P+M QP+A    AVP    SM P M NHPY P G+MP  MGPGMMQ  MPG 
Sbjct: 373 FA-PHTEHPVMPQPSAGWTAAVPAGPHSMPPQMNNHPYFPSGAMPPQMGPGMMQ--MPGH 429

Query: 322 SGMQHHHGA-MPPPRPDHMQ 340
           +G+Q   GA MPP RP  MQ
Sbjct: 430 TGIQ--QGAPMPPYRPGQMQ 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488039|gb|ABK95840.1| unknown [Populus trichocarpa]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/319 (78%), Positives = 268/319 (84%), Gaps = 12/319 (3%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD ETASSAKNALDGR+IP YLLPE++GPCTLRI
Sbjct: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYLLPEHLGPCTLRI 192

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           TYSAHTDLSVKFQSHRSRDYTN  LPVAPSAIDA+G  SVGLDGKKLEPESNVLLASIEN
Sbjct: 193 TYSAHTDLSVKFQSHRSRDYTNANLPVAPSAIDANGMFSVGLDGKKLEPESNVLLASIEN 252

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFS+FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           FCKLH+SYSRH+DLSIKVNNDRSRDYT+P+T M+N QPSILGQQPV   G  A+ Y GAQ
Sbjct: 313 FCKLHLSYSRHSDLSIKVNNDRSRDYTIPNTVMMNPQPSILGQQPVATHGPPAHTYPGAQ 372

Query: 265 FAPPPPEQPMMHQPTAAGWGAVPPASQSMP-MMGNHPYMPPGSMP--MGPGMMQMHMPGQ 321
                    MM QP+A      PP   SMP  M N+PY+PPG+MP  MG GMMQ  MP  
Sbjct: 373 ------HHQMMPQPSAGWATGGPPVPHSMPAQMNNNPYLPPGTMPPQMGHGMMQ--MPNH 424

Query: 322 SGMQHHHGAMPPPRPDHMQ 340
            G+  H  AMPP RP HMQ
Sbjct: 425 GGLP-HAPAMPPYRPGHMQ 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135279|ref|XP_002322027.1| predicted protein [Populus trichocarpa] gi|222869023|gb|EEF06154.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/319 (77%), Positives = 264/319 (82%), Gaps = 7/319 (2%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEK   FQALVQFSD ETASSAKNALDGR+IP YLLPE++GPCTLRI
Sbjct: 133 VFSAFGFVHKITTFEKMDRFQALVQFSDVETASSAKNALDGRNIPSYLLPEHLGPCTLRI 192

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
            YS HTDLSVKFQSHRSRDYTNP LPVA SAIDA+G  S+GLDGKKLEPESNVLLASIEN
Sbjct: 193 AYSGHTDLSVKFQSHRSRDYTNPNLPVAQSAIDANGMFSMGLDGKKLEPESNVLLASIEN 252

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFS+FGPVQKIAMFDKN GLQALIQYPDVQTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFSSFGPVQKIAMFDKNSGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           FCKLH+SYSRH DLSIKVNNDRSRDYT+P+  MVN QPSILGQQPV   G  ++ Y GAQ
Sbjct: 313 FCKLHLSYSRHNDLSIKVNNDRSRDYTIPNNVMVNPQPSILGQQPVATHGPPSHLYTGAQ 372

Query: 265 FAPPPPEQPMMHQPTAAGWGAVPPASQSMP-MMGNHPYMPPGSMP--MGPGMMQMHMPGQ 321
           FA P  E  M+ QP++      PP   SMP  M N+PY+PPG+MP  MG GMMQ  MP  
Sbjct: 373 FA-PTTEHSMIPQPSSGWATGFPPVPNSMPGQMNNNPYLPPGTMPPQMGHGMMQ--MPSH 429

Query: 322 SGMQHHHGAMPPPRPDHMQ 340
            G  H H AMPP RP HMQ
Sbjct: 430 GGPPHTH-AMPPYRPYHMQ 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490453|ref|XP_003634092.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like [Vitis vinifera]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/317 (75%), Positives = 270/317 (85%), Gaps = 14/317 (4%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD+ETAS+AKNALDGRSIPRYLLPE++GPCTLRI
Sbjct: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGPCTLRI 192

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           T+SAHTDLSVKFQSHRSRDYTNPYLPVA SAID SGQ S+G DG+K+EPESNVLLASIEN
Sbjct: 193 TFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVEPESNVLLASIEN 252

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFSAFGP+QKIAMFDKNGG+QALIQYPDVQTA+VAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAKEALEGHCIYDGG 312

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           FCKLHISYSRHTDLSIKVNNDRSRDYT   +P+++SQPS+LGQQPVP+ G + +Q+ GAQ
Sbjct: 313 FCKLHISYSRHTDLSIKVNNDRSRDYT---SPVLSSQPSVLGQQPVPIPGPSTHQFEGAQ 369

Query: 265 FAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMG--------NHPYMPPGSMPMGPGMMQM 316
           +A  P +QP++HQP+ AGW     A+ + P           NHPYMPPG+MP  P    M
Sbjct: 370 YA-SPSDQPVIHQPS-AGWATSAAAAGAPPPPPQSMPMQQHNHPYMPPGTMPPQPVPGMM 427

Query: 317 HMPGQSGMQHHHGAMPP 333
            M  Q+G+     AMPP
Sbjct: 428 PMQTQTGLP-QSAAMPP 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804914|emb|CAN66869.1| hypothetical protein VITISV_013673 [Vitis vinifera]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/317 (75%), Positives = 268/317 (84%), Gaps = 14/317 (4%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD+ETAS+AKNALDGRSIPRYLLPE++GPCTLRI
Sbjct: 442 VFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGPCTLRI 501

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           T+SAHTDLSVKFQSHRSRDYTNPYLPVA SAID SGQ S+G DG+K+EPESNVLLASIEN
Sbjct: 502 TFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVEPESNVLLASIEN 561

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFSAFGP+QKIAMFDKNGG+QALIQYPDVQTA+VAKEALEGHCIYDGG
Sbjct: 562 MQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAKEALEGHCIYDGG 621

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           FCKLHISYSRHTDLSIKVNNDRSRDYT   +P+++SQPS+LGQQPVP+ G + +Q+ GAQ
Sbjct: 622 FCKLHISYSRHTDLSIKVNNDRSRDYT---SPVLSSQPSVLGQQPVPIPGPSTHQFEGAQ 678

Query: 265 FAPPPPEQPMMHQPTAAGWGA--------VPPASQSMPMMGNHPYMPPGSMPMGPGMMQM 316
           +A  P +QP++HQP+ AGW           PP         NHPYMPPG+MP  P    M
Sbjct: 679 YA-SPSDQPVIHQPS-AGWATSAAAAGAPPPPPQSMPMQQHNHPYMPPGTMPPQPVPGMM 736

Query: 317 HMPGQSGMQHHHGAMPP 333
            M  Q+G+     AMPP
Sbjct: 737 PMQTQTGLP-QSAAMPP 752

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509289|ref|XP_003523383.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like [Glycine max]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/294 (80%), Positives = 252/294 (85%), Gaps = 21/294 (7%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYLLPE+MGPCTLRI
Sbjct: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCTLRI 192

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           TYS H+DLSVKFQSHRSRDYTNPYLPVAPSA++ SGQ  VGLDGK+LE ESNVLLASIEN
Sbjct: 193 TYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLEAESNVLLASIEN 252

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ+PD QTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQFPDTQTAVVAKEALEGHCIYDGG 312

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           FCKLHISYSRHTDLSIKVNNDRSRDYT+P+TP VN QPSILGQQ VPM+G     YNG+Q
Sbjct: 313 FCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPAVNVQPSILGQQSVPMMGPPQQPYNGSQ 372

Query: 265 FAPPPPEQPMMHQPTAAGWGAVPPAS--QSMPM-MGNHPYMPPGSMP--MGPGM 313
                           AGWG  PPA+  QSMPM M N+ YMP G+MP  M PGM
Sbjct: 373 ----------------AGWGTAPPATTVQSMPMQMHNNVYMPSGTMPQQMAPGM 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463843|ref|XP_003602203.1| Polypyrimidine tract-binding protein-like protein [Medicago truncatula] gi|355491251|gb|AES72454.1| Polypyrimidine tract-binding protein-like protein [Medicago truncatula]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/311 (76%), Positives = 263/311 (84%), Gaps = 6/311 (1%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYLL E++GPCTL+I
Sbjct: 457 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLSEHVGPCTLKI 516

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           TYS H+DL+VKFQSHRSRDYTNPYLPVA SAI+  GQ+ +GLDGK+LE ESNVLLASIEN
Sbjct: 517 TYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAIEGGGQVMIGLDGKRLEAESNVLLASIEN 576

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFSAFGP+QKIAMFDKNGGLQALIQYPD QTAVVAKEALEGHCIYDGG
Sbjct: 577 MQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHCIYDGG 636

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           FCKLH+SYSRHTDLSIKVNNDRSRDYT+P  P+VN+QPSILG QPVPM    A QYNG+Q
Sbjct: 637 FCKLHLSYSRHTDLSIKVNNDRSRDYTIPMIPVVNTQPSILG-QPVPMTVPPAQQYNGSQ 695

Query: 265 FAPPPPEQPMMHQPTAAGWG-AVPPASQSMPM-MGNHPYMPPGSMPMGPGMMQMHMPGQS 322
           +   P   P M   + AGWG  +P  +QSMP+ M N+ YMP G+MP G G MQM  PG  
Sbjct: 696 YT--PISDPAMIPQSQAGWGTTLPTVAQSMPLQMHNNIYMPAGNMPPGNGPMQMQ-PGNG 752

Query: 323 GMQHHHGAMPP 333
            MQ   G MPP
Sbjct: 753 PMQMPPGNMPP 763

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516021|ref|XP_003526695.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like [Glycine max]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/293 (79%), Positives = 253/293 (86%), Gaps = 20/293 (6%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYLLPE++GPCTLRI
Sbjct: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHVGPCTLRI 192

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           TYS H+DLSVKFQSHRSRDYTNPYLPVAPSA++ SGQ  VGLDGK+LE ESNVLLASIEN
Sbjct: 193 TYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLETESNVLLASIEN 252

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD QTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHCIYDGG 312

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 264
           FCKLH+SYSRHTDLSIKVNNDRSRDYT+P+TP+VN+QPSI GQQ V M+G +   + G+Q
Sbjct: 313 FCKLHLSYSRHTDLSIKVNNDRSRDYTIPNTPIVNAQPSIFGQQSVSMMGPSQQPFYGSQ 372

Query: 265 FAPPPPEQPMMHQPTAAGWGAVPPAS-QSMPM-MGNHPYMPPGSMP--MGPGM 313
                           AGWG  PPA+ QSMPM M N+ YMPPG+MP  M PGM
Sbjct: 373 ----------------AGWGTAPPAAVQSMPMQMHNNVYMPPGTMPQQMAPGM 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456492|ref|XP_004145983.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like [Cucumis sativus]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/328 (75%), Positives = 272/328 (82%), Gaps = 19/328 (5%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD ETASSAKNALDGRSIPRYLLP+++GPC+LRI
Sbjct: 456 VFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRSIPRYLLPDHVGPCSLRI 515

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           TYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID SGQ +VGLDGKKLEPESNVLLASIEN
Sbjct: 516 TYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDGSGQFTVGLDGKKLEPESNVLLASIEN 575

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTL+VLHMVFSAFGPVQKIAMFDKNGG+QALIQYPDVQTAVVAKEALEGHCIYDGG
Sbjct: 576 MQYAVTLEVLHMVFSAFGPVQKIAMFDKNGGVQALIQYPDVQTAVVAKEALEGHCIYDGG 635

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPST-PMVNSQPSILGQQPVP---------MVG 254
           FCKLHISYSRHTDLSIKVNNDRSRDYT+P+  PMVNSQP ++GQ P           M+G
Sbjct: 636 FCKLHISYSRHTDLSIKVNNDRSRDYTIPNNPPMVNSQPPVVGQGPGQGQGQQPPHQMMG 695

Query: 255 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPAS--QSMPMMGNHPYMPPGSMPMGPG 312
            + +QYNG Q+ P   +QP +  P ++GWG+  PA+   SMPM  N  YMP G+MP   G
Sbjct: 696 PSTHQYNGNQYGPSGEQQPGVQPPQSSGWGSGGPAATYSSMPMH-NPGYMPSGTMPPQHG 754

Query: 313 MMQMHMPGQSGMQHHHGAMPPPRPDHMQ 340
           M    MP  SG+  H    PP RPDH Q
Sbjct: 755 M----MPSPSGL--HQTPPPPYRPDHRQ 776

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807178|ref|NP_001242348.1| uncharacterized protein LOC100810102 [Glycine max] gi|255645249|gb|ACU23122.1| unknown [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/293 (79%), Positives = 254/293 (86%), Gaps = 8/293 (2%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYLLPE+MGPC+L+I
Sbjct: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCSLKI 192

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
           TYS H+DLSVKFQSHRSRDYTNPYLPVA SA++ SGQ  VGLDGK+LE ESNVLLASIEN
Sbjct: 193 TYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQPMVGLDGKRLEAESNVLLASIEN 252

Query: 145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
           MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD+QTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGG 312

Query: 205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPST--PMVNSQPSILGQQPVPMVGATANQYNG 262
           FCKLHISYSRH+DLSIKVNNDRSRDYT+P+   P+VN+QPSILGQ PVPM G    QYNG
Sbjct: 313 FCKLHISYSRHSDLSIKVNNDRSRDYTIPNVPPPVVNAQPSILGQHPVPMTGPPPQQYNG 372

Query: 263 AQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP--MGPGM 313
           AQ+A    EQ +M Q + AGWG  P  SQSM  M N+PY P   +P    PGM
Sbjct: 373 AQYA-SVTEQTLMPQ-SQAGWGTAP--SQSMLQMHNNPYTPSAMVPPQTAPGM 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2163746	429	PTB2 "AT5G53180" [Arabidopsis	0.682	0.540	0.809	7.1e-100
TAIR|locus:2102142	399	PTB1 "polypyrimidine tract-bin	0.661	0.563	0.700	2.7e-84
ZFIN|ZDB-GENE-050522-492	574	ptbp1a "polypyrimidine tract b	0.464	0.275	0.438	3.6e-26
TAIR|locus:2018630	432	PTB3 "polypyrimidine tract-bin	0.320	0.252	0.486	9.6e-26
UNIPROTKB|A8YXY5	446	PTBP1 "PTBP1 protein" [Bos tau	0.5	0.381	0.409	6.3e-25
ZFIN|ZDB-GENE-030131-9796	586	ptbp1b "polypyrimidine tract b	0.447	0.259	0.432	1e-24
UNIPROTKB|Q6P736	556	Ptbp1 "Polypyrimidine tract bi	0.5	0.305	0.409	1.8e-24
UNIPROTKB|J9P5T5	557	PTBP1 "Uncharacterized protein	0.5	0.305	0.409	1.8e-24
UNIPROTKB|F1PCJ7	558	PTBP1 "Uncharacterized protein	0.5	0.304	0.409	1.9e-24
UNIPROTKB|D4AB53	528	Ptbp1 "Polypyrimidine tract-bi	0.558	0.359	0.378	2.5e-24

TAIR|locus:2163746 PTB2 "AT5G53180" [Arabidopsis thaliana (taxid:3702)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 195/241 (80%), Positives = 217/241 (90%)

Query:    25 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
             VFSAFGFVHKITTFEKTAG+QALVQF+D ETA++AK ALDGRSIPRYLL E +G C+L+I
Sbjct:   133 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKI 192

Query:    85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
             TYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+EPESNVLLASIEN
Sbjct:   193 TYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIEN 252

Query:   145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
             MQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAKEALEGHCIYDGG
Sbjct:   253 MQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGG 312

Query:   205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV--PMVGATANQYNG 262
             FCKLHI+YSRHTDLSIKVNNDRSRDYT+P+ P+    P  + QQPV  P  G    QY+ 
Sbjct:   313 FCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV----P--MPQQPVQNPYAG-NPQQYHA 365

Query:   263 A 263
             A
Sbjct:   366 A 366

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009846 "pollen germination" evidence=IGI

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0006417 "regulation of translation" evidence=IEP

GO:0043484 "regulation of RNA splicing" evidence=IDA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

TAIR|locus:2102142 PTB1 "polypyrimidine tract-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 159/227 (70%), Positives = 193/227 (85%)

Query:    25 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
             VFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL  ++G C+LR+
Sbjct:   132 VFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRM 191

Query:    85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
             +YSAHTDL++KFQSHRSRDYTNPYLPV  +A+D S Q ++G DGKK+E +SNVLL  IEN
Sbjct:   192 SYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIEN 251

Query:   145 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
             MQYAVT+DVLH VFSA+G VQKIA+F+KNG  QALIQY D+ TA +AKEALEGHCIYDGG
Sbjct:   252 MQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGG 311

Query:   205 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ--PSILGQQP 249
             +CKL +SYSRHTDL++K  +D+SRDYTLP   ++ +Q  P++ G  P
Sbjct:   312 YCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAP 358

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009846 "pollen germination" evidence=IGI

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0006417 "regulation of translation" evidence=IEP

GO:0043484 "regulation of RNA splicing" evidence=IDA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

ZFIN|ZDB-GENE-050522-492 ptbp1a "polypyrimidine tract binding protein 1a" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 3.6e-26, P = 3.6e-26
 Identities = 71/162 (43%), Positives = 92/162 (56%)

Query:    86 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENM 145
             YS H +L      ++ R      L  A +A+   G     +DG  +  +S VL   +EN+
Sbjct:   145 YSNHKELKTDNSPNQVR--AQAALQ-AVNAVQTGGMSLAAIDGAGMGSQSPVLRVIVENL 201

Query:   146 QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 205
              Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  TA  AK +L+G  IY+   
Sbjct:   202 FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTAQHAKLSLDGQNIYNA-C 260

Query:   206 CKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 247
             C L IS+S+ T L++K NND+SRDYT P  P  +SQPS   Q
Sbjct:   261 CTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPSFDAQ 302

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0060472 "positive regulation of cortical granule exocytosis by elevation of cytosolic calcium ion concentration" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0060729 "intestinal epithelial structure maintenance" evidence=IMP

TAIR|locus:2018630 PTB3 "polypyrimidine tract-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
 Identities = 54/111 (48%), Positives = 74/111 (66%)

Query:   126 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 185
             + G++ EP + +LL +I +M Y +T+DVLH VFS +G V+K+  F K+ G QALIQY   
Sbjct:    90 IHGREDEP-NRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQ 148

Query:   186 QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 236
             Q A  A+ AL+G  IYDG  C+L I +S   +L +  NNDRSRDYT P+ P
Sbjct:   149 QCAASARTALQGRNIYDG-CCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006417 "regulation of translation" evidence=IEP

GO:0043484 "regulation of RNA splicing" evidence=IDA

UNIPROTKB|A8YXY5 PTBP1 "PTBP1 protein" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 6.3e-25, P = 6.3e-25
 Identities = 77/188 (40%), Positives = 107/188 (56%)

Query:    94 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 141
             ++F +H+  +  ++P    A +A+ A     SG L++      +D G  +  +S VL   
Sbjct:   128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 187

Query:   142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201
             +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  IY
Sbjct:   188 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 247

Query:   202 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 257
             +   C L I +S+ T L++K NND+SRDYT P  P  +SQPS L Q      GA    +A
Sbjct:   248 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 305

Query:   258 NQYNGAQF 265
             + Y GA F
Sbjct:   306 SPYAGAGF 313

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-9796 ptbp1b "polypyrimidine tract binding protein 1b" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 70/162 (43%), Positives = 96/162 (59%)

Query:    86 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA--SGQLSVG-LDGKKLEPESNVLLASI 142
             YS H +L      ++ R         A  A++A  +G L++G +D   +   S VL   +
Sbjct:   164 YSNHKELKTDNSPNQVR------AQAALQAVNAVQTGSLTLGGVDPSGMTGPSPVLRVIV 217

Query:   143 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 202
             EN+ Y VTLDVLH +FS FG V K+  F KN   QAL+Q+ D  TA  AK AL+G  IY+
Sbjct:   218 ENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKLALDGQNIYN 277

Query:   203 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
             G  C L IS+S+ T L++K NND+SRDYT P  P  +SQP++
Sbjct:   278 G-CCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPAL 318

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q6P736 Ptbp1 "Polypyrimidine tract binding protein 1, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 77/188 (40%), Positives = 107/188 (56%)

Query:    94 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 141
             ++F +H+  +  ++P    A +A+ A     SG L++      +D G  +  +S VL   
Sbjct:   127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 186

Query:   142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201
             +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  IY
Sbjct:   187 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 246

Query:   202 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 257
             +   C L I +S+ T L++K NND+SRDYT P  P  +SQPS L Q      GA    +A
Sbjct:   247 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 304

Query:   258 NQYNGAQF 265
             + Y GA F
Sbjct:   305 SPYAGAGF 312

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P5T5 PTBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 286 (105.7 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 77/188 (40%), Positives = 107/188 (56%)

Query:    94 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 141
             ++F +H+  +  ++P    A +A+ A     SG L++      +D G  +  +S VL   
Sbjct:   128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 187

Query:   142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201
             +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  IY
Sbjct:   188 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 247

Query:   202 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 257
             +   C L I +S+ T L++K NND+SRDYT P  P  +SQPS L Q      GA    +A
Sbjct:   248 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 305

Query:   258 NQYNGAQF 265
             + Y GA F
Sbjct:   306 SPYAGAGF 313

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PCJ7 PTBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 286 (105.7 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 77/188 (40%), Positives = 107/188 (56%)

Query:    94 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 141
             ++F +H+  +  ++P    A +A+ A     SG L++      +D G  +  +S VL   
Sbjct:   129 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 188

Query:   142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201
             +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  IY
Sbjct:   189 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 248

Query:   202 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 257
             +   C L I +S+ T L++K NND+SRDYT P  P  +SQPS L Q      GA    +A
Sbjct:   249 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 306

Query:   258 NQYNGAQF 265
             + Y GA F
Sbjct:   307 SPYAGAGF 314

GO:0051148 "negative regulation of muscle cell differentiation" evidence=IEA

GO:0048025 "negative regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0036002 "pre-mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|D4AB53 Ptbp1 "Polypyrimidine tract-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 284 (105.0 bits), Expect = 2.5e-24, P = 2.5e-24
 Identities = 78/206 (37%), Positives = 109/206 (52%)

Query:    94 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 141
             ++F +H+  +  ++P    A +A+ A     SG L++      +D G  +  +S VL   
Sbjct:   127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 186

Query:   142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201
             +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  IY
Sbjct:   187 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 246

Query:   202 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 261
             +   C L I +S+ T L++K NND+SRDYT P  P  +SQPS L Q      G +    +
Sbjct:   247 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGLSVPNVH 304

Query:   262 GAQFAXXXXXXXXXXXXTAAGWGAVP 287
             GA                AAG  A+P
Sbjct:   305 GA--LAPLAIPSAAAAAAAAGRIAIP 328

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
cd12690	97	cd12690, RRM3_PTBPH1_PTBPH2, RNA recognition motif	1e-70
cd12691	95	cd12691, RRM2_PTBPH1_PTBPH2, RNA recognition motif	5e-44
cd12693	96	cd12693, RRM2_PTBP1_like, RNA recognition motif 2	2e-37
TIGR01649	481	TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl	3e-34
cd12422	85	cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition m	1e-33
cd12691	95	cd12691, RRM2_PTBPH1_PTBPH2, RNA recognition motif	9e-28
cd12690	97	cd12690, RRM3_PTBPH1_PTBPH2, RNA recognition motif	6e-27
cd12783	101	cd12783, RRM2_PTBP2, RNA recognition motif 2 in ve	1e-26
cd12782	100	cd12782, RRM2_PTBP1, RNA recognition motif 2 in ve	4e-26
cd12784	103	cd12784, RRM2_ROD1, RNA recognition motif 2 in ver	8e-26
cd12693	96	cd12693, RRM2_PTBP1_like, RNA recognition motif 2	5e-24
cd12422	85	cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition m	3e-21
cd12694	86	cd12694, RRM2_hnRNPL_like, RNA recognition motif 2	5e-21
cd12692	88	cd12692, RRM2_PTBPH3, RNA recognition motif 2 in p	8e-21
cd12786	96	cd12786, RRM2_hnRPLL, RNA recognition motif 2 in v	9e-19
cd12783	101	cd12783, RRM2_PTBP2, RNA recognition motif 2 in ve	3e-18
TIGR01649	481	TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl	9e-18
cd12785	100	cd12785, RRM2_hnRNPL, RNA recognition motif 2 in v	2e-17
cd12784	103	cd12784, RRM2_ROD1, RNA recognition motif 2 in ver	1e-16
cd12782	100	cd12782, RRM2_PTBP1, RNA recognition motif 2 in ve	3e-16
cd12692	88	cd12692, RRM2_PTBPH3, RNA recognition motif 2 in p	1e-13
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	1e-09
cd12694	86	cd12694, RRM2_hnRNPL_like, RNA recognition motif 2	3e-09
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	7e-08
cd12785	100	cd12785, RRM2_hnRNPL, RNA recognition motif 2 in v	8e-08
cd12786	96	cd12786, RRM2_hnRPLL, RNA recognition motif 2 in v	1e-07
cd12246	78	cd12246, RRM1_U1A_like, RNA recognition motif 1 in	2e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
smart00360	73	smart00360, RRM, RNA recognition motif	6e-06
cd12245	79	cd12245, RRM_scw1_like, RNA recognition motif in y	2e-05
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	2e-05
cd12310	72	cd12310, RRM3_Spen, RNA recognition motif 3 in the	1e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	2e-04
cd12423	74	cd12423, RRM3_PTBP1_like, RNA recognition motif 3	2e-04
cd12364	81	cd12364, RRM_RDM1, RNA recognition motif of RAD52	5e-04
cd12429	74	cd12429, RRM_DNAJC17, RNA recognition motif in the	7e-04
cd12398	75	cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
cd12614	74	cd12614, RRM1_PUB1, RNA recognition motif 1 in yea	0.002
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003
cd12310	72	cd12310, RRM3_Spen, RNA recognition motif 3 in the	0.003

>gnl|CDD|241134 cd12690, RRM3_PTBPH1_PTBPH2, RNA recognition motif 3 in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)

 Score =  214 bits (547), Expect = 1e-70
 Identities = 85/97 (87%), Positives = 92/97 (94%)

Query: 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 194
           SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNGG QALIQYPDV TAV AKEA
Sbjct: 1   SNVLLASIENMQYAVTVDVLHTVFSAFGFVQKIAIFEKNGGFQALIQYPDVPTAVNAKEA 60

Query: 195 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 231
           LEGHCIYDGG+CKLH+SYSRHTDL++KVNNDRSRDYT
Sbjct: 61  LEGHCIYDGGYCKLHLSYSRHTDLNVKVNNDRSRDYT 97

This subfamily corresponds to the RRM3 of PTBPH1 and PTBPH2. Although their biological roles remain unclear, PTBPH1 and PTBPH2 show significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Both, PTBPH1 and PTBPH2, contain three RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 97

>gnl|CDD|241135 cd12691, RRM2_PTBPH1_PTBPH2, RNA recognition motif 2 in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)

 Score =  146 bits (370), Expect = 5e-44
 Identities = 61/72 (84%), Positives = 69/72 (95%)

Query: 25 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
          VFSAFGFVHKI TFEKTAGFQALVQFSD ETAS+A++ALDGRSIPRYLL E++GPC+LRI
Sbjct: 24 VFSAFGFVHKIATFEKTAGFQALVQFSDAETASAARSALDGRSIPRYLLAEHVGPCSLRI 83

Query: 85 TYSAHTDLSVKF 96
          +YSAHTDL+VKF
Sbjct: 84 SYSAHTDLNVKF 95

This subfamily corresponds to the RRM2 of PTBPH1 and PTBPH2. Although their biological roles remain unclear, PTBPH1 and PTBPH2 show significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Both, PTBPH1 and PTBPH2, contain three RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Length = 95

>gnl|CDD|241137 cd12693, RRM2_PTBP1_like, RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins

 Score =  129 bits (326), Expect = 2e-37
 Identities = 53/97 (54%), Positives = 65/97 (67%), Gaps = 1/97 (1%)

Query: 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 194
           + VL   +ENM Y VTLDVLH +FS FG V KI  F KN   QALIQ+ D  +A  AK +
Sbjct: 1   NTVLRVIVENMTYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQFADAVSAQAAKLS 60

Query: 195 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 231
           L+G  IY+ G C L I YS+ T L++K NND+SRDYT
Sbjct: 61  LDGQNIYN-GCCTLRIDYSKLTSLNVKYNNDKSRDYT 96

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), and similar proteins found in Metazoa. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 also contains four RRMs. ROD1 coding protein Rod1 is a mammalian PTB homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It may play a role controlling differentiation in mammals. All members in this family contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 96

>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family

 Score =  130 bits (329), Expect = 3e-34
 Identities = 73/277 (26%), Positives = 108/277 (38%), Gaps = 44/277 (15%)

Query: 45  QALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDY 104
           QALV+F D E   SAK  ++  +     +P  +        YS   ++         RD 
Sbjct: 40  QALVEFEDEE---SAKACVNFATS----VPIYIRGQPAFFNYSTSQEIK--------RD- 83

Query: 105 TNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 164
                    S  D++G              + VL   +EN  Y +TLDVL+ +F+ +G V
Sbjct: 84  -------GNSDFDSAGP-------------NKVLRVIVENPMYPITLDVLYQIFNPYGKV 123

Query: 165 QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN 224
            +I  F KN   QAL+++  V +A  AK AL G  IY+ G C L I Y++ T L++K N+
Sbjct: 124 LRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYN-GCCTLKIEYAKPTRLNVKYND 182

Query: 225 DRSRDYTLPSTP-------MVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQ 277
           D SRDYT P  P           +                + Y+       P        
Sbjct: 183 DDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMG 242

Query: 278 PTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMM 314
           P         PA ++ P+        P     G  +M
Sbjct: 243 PPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLM 279

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481

>gnl|CDD|240868 cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins

 Score =  119 bits (300), Expect = 1e-33
 Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 1/85 (1%)

Query: 137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 196
           VLL +I N+ Y VT+DVLH VFS +G V+KI +F+KN G+QAL+Q+  V++A  AK+AL 
Sbjct: 1   VLLVTISNLLYPVTVDVLHQVFSPYGAVEKILIFEKNTGVQALVQFDSVESAENAKKALN 60

Query: 197 GHCIYDGGFCKLHISYSRHTDLSIK 221
           G  IYDG  C L I +SR  +L++K
Sbjct: 61  GRNIYDGC-CTLDIQFSRLKELTVK 84

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins, and RRM3 of PTBPH1 and PTBPH2. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. This family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. . Length = 85

>gnl|CDD|241135 cd12691, RRM2_PTBPH1_PTBPH2, RNA recognition motif 2 in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)

 Score =  103 bits (259), Expect = 9e-28
 Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 7/94 (7%)

Query: 135 SNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 193
            NVLL +IE ++   V++DVLH+VFSAFG V KIA F+K  G QAL+Q+ D +TA  A+ 
Sbjct: 1   GNVLLVTIEGVEAGDVSIDVLHLVFSAFGFVHKIATFEKTAGFQALVQFSDAETASAARS 60

Query: 194 ALEGHCI------YDGGFCKLHISYSRHTDLSIK 221
           AL+G  I         G C L ISYS HTDL++K
Sbjct: 61  ALDGRSIPRYLLAEHVGPCSLRISYSAHTDLNVK 94

This subfamily corresponds to the RRM2 of PTBPH1 and PTBPH2. Although their biological roles remain unclear, PTBPH1 and PTBPH2 show significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Both, PTBPH1 and PTBPH2, contain three RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Length = 95

>gnl|CDD|241134 cd12690, RRM3_PTBPH1_PTBPH2, RNA recognition motif 3 in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)

 Score =  101 bits (254), Expect = 6e-27
 Identities = 45/81 (55%), Positives = 54/81 (66%), Gaps = 6/81 (7%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VFSAFGFV KI  FEK  GFQAL+Q+ D  TA +AK AL+G  I       + G C L +
Sbjct: 23  VFSAFGFVQKIAIFEKNGGFQALIQYPDVPTAVNAKEALEGHCI------YDGGYCKLHL 76

Query: 85  TYSAHTDLSVKFQSHRSRDYT 105
           +YS HTDL+VK  + RSRDYT
Sbjct: 77  SYSRHTDLNVKVNNDRSRDYT 97

This subfamily corresponds to the RRM3 of PTBPH1 and PTBPH2. Although their biological roles remain unclear, PTBPH1 and PTBPH2 show significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Both, PTBPH1 and PTBPH2, contain three RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 97

>gnl|CDD|241227 cd12783, RRM2_PTBP2, RNA recognition motif 2 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)

 Score =  101 bits (252), Expect = 1e-26
 Identities = 54/102 (52%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 194
           S VL   I+NM Y VTLDVLH +FS FG V KI  F KN   QAL+QY D   A  AK A
Sbjct: 1   SPVLRIIIDNMYYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 60

Query: 195 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 236
           L+G  IY+   C L I +S+  +L++K NND+SRDYT P  P
Sbjct: 61  LDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 101

This subgroup corresponds to the RRM2 of PTBP2, also known as neural polypyrimidine tract-binding protein or neurally-enriched homolog of PTB (nPTB), highly homologous to polypyrimidine tract binding protein (PTB) and perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 contains four RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 101

>gnl|CDD|241226 cd12782, RRM2_PTBP1, RNA recognition motif 2 in vertebrate polypyrimidine tract-binding protein 1 (PTB)

 Score = 99.8 bits (248), Expect = 4e-26
 Identities = 52/100 (52%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 193
           +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +A  AK 
Sbjct: 1   QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 60

Query: 194 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 233
           +L+G  IY+   C L I +S+ T L++K NND+SRDYT P
Sbjct: 61  SLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRP 99

This subgroup corresponds to the RRM2 of PTB, also known as 58 kDa RNA-binding protein PPTB-1 or heterogeneous nuclear ribonucleoprotein I (hnRNP I), an important negative regulator of alternative splicing in mammalian cells. PTB also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTB contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). RRM1 and RRM2 are independent from each other and separated by flexible linkers. By contrast, there is an unusual and conserved interdomain interaction between RRM3 and RRM4. It is widely held that only RRMs 3 and 4 are involved in RNA binding and RRM2 mediates PTB homodimer formation. However, new evidence shows that the RRMs 1 and 2 also contribute substantially to RNA binding. Moreover, PTB may not always dimerize to repress splicing. It is a monomer in solution. . Length = 100

>gnl|CDD|241228 cd12784, RRM2_ROD1, RNA recognition motif 2 in vertebrate regulator of differentiation 1 (Rod1)

 Score = 98.9 bits (246), Expect = 8e-26
 Identities = 51/103 (49%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 193
           +S VL   +EN+ Y VTL+VLH +FS FG V KI  F KN   QAL+QY D   A  AK 
Sbjct: 2   QSPVLRIIVENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHAKM 61

Query: 194 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 236
           AL+G  IY+   C L I +S+ T L++K NND+SRD+T    P
Sbjct: 62  ALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 103

This subgroup corresponds to the RRM2 of ROD1 coding protein Rod1, a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein and negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. Rod1 contains four repeats of RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and does have RNA binding activities. . Length = 103

>gnl|CDD|241137 cd12693, RRM2_PTBP1_like, RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins

 Score = 94.0 bits (234), Expect = 5e-24
 Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 7/82 (8%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +FS FG V KI TF K   FQAL+QF+D  +A +AK +LDG++I  Y      G CTLR
Sbjct: 22  QIFSKFGTVLKIITFTKNNQFQALIQFADAVSAQAAKLSLDGQNI--Y-----NGCCTLR 74

Query: 84  ITYSAHTDLSVKFQSHRSRDYT 105
           I YS  T L+VK+ + +SRDYT
Sbjct: 75  IDYSKLTSLNVKYNNDKSRDYT 96

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), and similar proteins found in Metazoa. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 also contains four RRMs. ROD1 coding protein Rod1 is a mammalian PTB homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It may play a role controlling differentiation in mammals. All members in this family contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 96

>gnl|CDD|240868 cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins

 Score = 86.1 bits (214), Expect = 3e-21
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 7/72 (9%)

Query: 25 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
          VFS +G V KI  FEK  G QALVQF   E+A +AK AL+GR+I         G CTL I
Sbjct: 21 VFSPYGAVEKILIFEKNTGVQALVQFDSVESAENAKKALNGRNI-------YDGCCTLDI 73

Query: 85 TYSAHTDLSVKF 96
           +S   +L+VK+
Sbjct: 74 QFSRLKELTVKY 85

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins, and RRM3 of PTBPH1 and PTBPH2. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. This family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. . Length = 85

>gnl|CDD|241138 cd12694, RRM2_hnRNPL_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins

 Score = 85.5 bits (212), Expect = 5e-21
 Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 195
           +VLL +I N  Y +T+DV++ + +  G V +I +F KN G+QA++++  V +A  AK AL
Sbjct: 2   HVLLFTILNAIYPITVDVIYTICNPHGKVLRIVIFRKN-GVQAMVEFDSVDSAQRAKAAL 60

Query: 196 EGHCIYDGGFCKLHISYSRHTDLSI 220
            G  IY  G C L I Y++   L++
Sbjct: 61  NGADIY-AGCCTLKIEYAKPDRLNV 84

This subfamily corresponds to the RRM2 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both nuclear and cytoplasmic roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 86

>gnl|CDD|241136 cd12692, RRM2_PTBPH3, RNA recognition motif 2 in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)

 Score = 85.0 bits (210), Expect = 8e-21
 Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 1/84 (1%)

Query: 137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 196
           +LL +I +  Y +T+DVLH VFS  G V+KI  F K+ GLQALIQY   Q+AV A+  L+
Sbjct: 4   ILLVTIHHPLYPITVDVLHQVFSPHGFVEKIVTFQKSAGLQALIQYTSQQSAVQARTNLQ 63

Query: 197 GHCIYDGGFCKLHISYSRHTDLSI 220
           G  IYD G C+L I +S   +L +
Sbjct: 64  GRNIYD-GCCQLDIQFSNLQELQV 86

This subfamily corresponds to the RRM2 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 88

>gnl|CDD|241230 cd12786, RRM2_hnRPLL, RNA recognition motif 2 in vertebrate heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL)

 Score = 79.7 bits (196), Expect = 9e-19
 Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)

Query: 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 194
           + VLL SI+N  Y +T+DVL+ V +  G VQ+I +F +N G+QA++++  V  A  AK A
Sbjct: 2   NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVHCAQKAKAA 60

Query: 195 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 231
           L G  IY  G C L I Y+R T L++  N++ S DYT
Sbjct: 61  LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT 96

The subgroup corresponds to the RRM2 of hnRNP-LL which plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to heterogeneous nuclear ribonucleoprotein L (hnRNP-L), which is an abundant nuclear, multifunctional RNA-binding protein with three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 96

>gnl|CDD|241227 cd12783, RRM2_PTBP2, RNA recognition motif 2 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)

 Score = 78.5 bits (193), Expect = 3e-18
 Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +FS FG V KI TF K   FQAL+Q+ D   A  AK ALDG++I           CTLR
Sbjct: 22  QIFSKFGTVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLR 74

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYLP 110
           I +S   +L+VK+ + +SRDYT P LP
Sbjct: 75  IDFSKLVNLNVKYNNDKSRDYTRPDLP 101

This subgroup corresponds to the RRM2 of PTBP2, also known as neural polypyrimidine tract-binding protein or neurally-enriched homolog of PTB (nPTB), highly homologous to polypyrimidine tract binding protein (PTB) and perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 contains four RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 101

>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family

 Score = 83.7 bits (207), Expect = 9e-18
 Identities = 39/86 (45%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           +F+ +G V +I TF K   FQALV+F    +A  AK AL+G  I         G CTL+I
Sbjct: 116 IFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYN-------GCCTLKI 168

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLP 110
            Y+  T L+VK+    SRDYTNP LP
Sbjct: 169 EYAKPTRLNVKYNDDDSRDYTNPDLP 194

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481

>gnl|CDD|241229 cd12785, RRM2_hnRNPL, RNA recognition motif 2 in vertebrate heterogeneous nuclear ribonucleoprotein L (hnRNP-L)

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 2/99 (2%)

Query: 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 194
           +NVLL +I N  Y++T DVL+ + +  GPVQ+I +F KN G+QA++++  VQ+A  AK +
Sbjct: 4   NNVLLLTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 62

Query: 195 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 233
           L G  IY  G C L I Y++ T L++  N+  + DYT P
Sbjct: 63  LNGADIYS-GCCTLKIEYAKPTRLNVFKNDQDTWDYTNP 100

This subgroup corresponds to the RRM2 of hnRNP-L, a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-L shows significant sequence homology to polypyrimidine tract-binding protein (PTB or hnRNP I). Both hnRNP-L and PTB are localized in the nucleus but excluded from the nucleolus. hnRNP-L is an RNA-binding protein with three RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 100

>gnl|CDD|241228 cd12784, RRM2_ROD1, RNA recognition motif 2 in vertebrate regulator of differentiation 1 (Rod1)

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +FS FG V KI TF K   FQAL+Q++D   A  AK ALDG++I           CTLR
Sbjct: 24  QIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHAKMALDGQNIYN-------ACCTLR 76

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYLP 110
           I +S  T L+VK+ + +SRD+T   LP
Sbjct: 77  IDFSKLTSLNVKYNNDKSRDFTRLDLP 103

This subgroup corresponds to the RRM2 of ROD1 coding protein Rod1, a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein and negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. Rod1 contains four repeats of RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and does have RNA binding activities. . Length = 103

>gnl|CDD|241226 cd12782, RRM2_PTBP1, RNA recognition motif 2 in vertebrate polypyrimidine tract-binding protein 1 (PTB)

 Score = 73.2 bits (179), Expect = 3e-16
 Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 7/84 (8%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +FS FG V KI TF K   FQAL+Q++D  +A  AK +LDG++I           CTLR
Sbjct: 23  QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 75

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNP 107
           I +S  T L+VK+ + +SRDYT P
Sbjct: 76  IDFSKLTSLNVKYNNDKSRDYTRP 99

This subgroup corresponds to the RRM2 of PTB, also known as 58 kDa RNA-binding protein PPTB-1 or heterogeneous nuclear ribonucleoprotein I (hnRNP I), an important negative regulator of alternative splicing in mammalian cells. PTB also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTB contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). RRM1 and RRM2 are independent from each other and separated by flexible linkers. By contrast, there is an unusual and conserved interdomain interaction between RRM3 and RRM4. It is widely held that only RRMs 3 and 4 are involved in RNA binding and RRM2 mediates PTB homodimer formation. However, new evidence shows that the RRMs 1 and 2 also contribute substantially to RNA binding. Moreover, PTB may not always dimerize to repress splicing. It is a monomer in solution. . Length = 100

>gnl|CDD|241136 cd12692, RRM2_PTBPH3, RNA recognition motif 2 in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)

 Score = 65.3 bits (159), Expect = 1e-13
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 24 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
           VFS  GFV KI TF+K+AG QAL+Q++  ++A  A+  L GR+I         G C L 
Sbjct: 23 QVFSPHGFVEKIVTFQKSAGLQALIQYTSQQSAVQARTNLQGRNIYD-------GCCQLD 75

Query: 84 ITYSAHTDLSVKF 96
          I +S   +L V +
Sbjct: 76 IQFSNLQELQVNY 88

This subfamily corresponds to the RRM2 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 88

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 154 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213
           L+ +FS FG V+KI +  K  G  A +++   + A  A + L G          L + YS
Sbjct: 1   LYKLFSPFGNVEKIKLLKKKPG-FAFVEFSTEEAAEKAVQYLNGVLFGGR---PLRVDYS 56

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|241138 cd12694, RRM2_hnRNPL_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 27 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 86
          +  G V +I  F K  G QA+V+F   ++A  AK AL+G  I         G CTL+I Y
Sbjct: 25 NPHGKVLRIVIFRKN-GVQAMVEFDSVDSAQRAKAALNGADIYA-------GCCTLKIEY 76

Query: 87 SAHTDLSV 94
          +    L+V
Sbjct: 77 AKPDRLNV 84

This subfamily corresponds to the RRM2 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both nuclear and cytoplasmic roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 86

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 48.3 bits (116), Expect = 7e-08
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 26 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85
          FS FG V KI   +K  GF A V+FS  E A  A   L+G            G   LR+ 
Sbjct: 5  FSPFGNVEKIKLLKKKPGF-AFVEFSTEEAAEKAVQYLNGVLF---------GGRPLRVD 54

Query: 86 YS 87
          YS
Sbjct: 55 YS 56

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|241229 cd12785, RRM2_hnRNPL, RNA recognition motif 2 in vertebrate heterogeneous nuclear ribonucleoprotein L (hnRNP-L)

 Score = 49.3 bits (117), Expect = 8e-08
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 30  GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 89
           G V +I  F K  G QA+V+F   ++A  AK +L+G  I         G CTL+I Y+  
Sbjct: 31  GPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKIEYAKP 82

Query: 90  TDLSVKFQSHRSRDYTNP 107
           T L+V      + DYTNP
Sbjct: 83  TRLNVFKNDQDTWDYTNP 100

This subgroup corresponds to the RRM2 of hnRNP-L, a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-L shows significant sequence homology to polypyrimidine tract-binding protein (PTB or hnRNP I). Both hnRNP-L and PTB are localized in the nucleus but excluded from the nucleolus. hnRNP-L is an RNA-binding protein with three RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 100

>gnl|CDD|241230 cd12786, RRM2_hnRPLL, RNA recognition motif 2 in vertebrate heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL)

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           V +  G V +I  F++  G QA+V+F     A  AK AL+G  I         G CTL+I
Sbjct: 24  VCNPVGKVQRIVIFKRN-GIQAMVEFESVHCAQKAKAALNGADI-------YAGCCTLKI 75

Query: 85  TYSAHTDLSVKFQSHRSRDYT 105
            Y+  T L+V    + S DYT
Sbjct: 76  EYARPTRLNVIRNDNDSWDYT 96

The subgroup corresponds to the RRM2 of hnRNP-LL which plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to heterogeneous nuclear ribonucleoprotein L (hnRNP-L), which is an abundant nuclear, multifunctional RNA-binding protein with three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 96

>gnl|CDD|240692 cd12246, RRM1_U1A_like, RNA recognition motif 1 in the U1A/U2B"/SNF protein family

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 154 LHMVFSAFGPVQKIAMF--DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211
           L+ +FS FGPV  I      K  G QA + + DV++A  A  AL+G   YD     + I 
Sbjct: 20  LYALFSQFGPVLDIVASKTLKMRG-QAFVVFKDVESATNALRALQGFPFYDK---PMRIQ 75

Query: 212 YSR 214
           Y++
Sbjct: 76  YAK 78

This subfamily corresponds to the RRM1 of U1A/U2B"/SNF protein family which contains Drosophila sex determination protein SNF and its two mammalian counterparts, U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A) and U2 small nuclear ribonucleoprotein B" (U2 snRNP B" or U2B"), all of which consist of two RNA recognition motifs (RRMs), connected by a variable, flexible linker. SNF is an RNA-binding protein found in the U1 and U2 snRNPs of Drosophila where it is essential in sex determination and possesses a novel dual RNA binding specificity. SNF binds with high affinity to both Drosophila U1 snRNA stem-loop II (SLII) and U2 snRNA stem-loop IV (SLIV). It can also bind to poly(U) RNA tracts flanking the alternatively spliced Sex-lethal (Sxl) exon, as does Drosophila Sex-lethal protein (SXL). U1A is an RNA-binding protein associated with the U1 snRNP, a small RNA-protein complex involved in pre-mRNA splicing. U1A binds with high affinity and specificity to stem-loop II (SLII) of U1 snRNA. It is predominantly a nuclear protein that shuttles between the nucleus and the cytoplasm independently of interactions with U1 snRNA. Moreover, U1A may be involved in RNA 3'-end processing, specifically cleavage, splicing and polyadenylation, through interacting with a large number of non-snRNP proteins. U2B", initially identified to bind to stem-loop IV (SLIV) at the 3' end of U2 snRNA, is a unique protein that comprises of the U2 snRNP. Additional research indicates U2B" binds to U1 snRNA stem-loop II (SLII) as well and shows no preference for SLIV or SLII on the basis of binding affinity. Moreover, U2B" does not require an auxiliary protein for binding to RNA, and its nuclear transport is independent of U2 snRNA binding. . Length = 78

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/103 (21%), Positives = 30/103 (29%), Gaps = 2/103 (1%)

Query: 240 SQPSILGQ-QPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMG- 297
           SQP      Q +  +     Q    Q AP  P+ P    P            Q  P    
Sbjct: 142 SQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPP 201

Query: 298 NHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 340
            +P  P G          +  P Q+  Q       P +P  +Q
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQ 244

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGGL---QALIQYPDVQTAVVAKEALEG 197
           + N+    T + L  +FS FG V+ + +  DK  G     A +++   + A  A EAL G
Sbjct: 4   VGNLPPDTTEEELRELFSKFGKVESVRLVRDKETGKSKGFAFVEFESEEDAEKALEALNG 63

Query: 198 HCIYD 202
             +  
Sbjct: 64  KELDG 68

Length = 73

>gnl|CDD|240691 cd12245, RRM_scw1_like, RNA recognition motif in yeast cell wall integrity protein scw1 and similar proteins

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201
           + N+    T + L  +FS     +++ M +K GG    +++ DV  A  A  +L+G  + 
Sbjct: 7   VANLGPNTTEEELRQLFSRQPGFRRLKMHNKGGGPVCFVEFEDVSFATQALNSLQGAVLS 66

Query: 202 D---GGFCKLHISYSR 214
               GG   + I Y++
Sbjct: 67  SSDRGG---IRIEYAK 79

This subfamily corresponds to the RRM of the family including yeast cell wall integrity protein scw1, yeast Whi3 protein, yeast Whi4 protein and similar proteins. The strong cell wall protein 1, scw1, is a nonessential cytoplasmic RNA-binding protein that regulates septation and cell-wall structure in fission yeast. It may function as an inhibitor of septum formation, such that its loss of function allows weak SIN signaling to promote septum formation. It's RRM domain shows high homology to two budding yeast proteins, Whi3 and Whi4. Whi3 is a dose-dependent modulator of cell size and has been implicated in cell cycle control in the yeast Saccharomyces cerevisiae. It functions as a negative regulator of ceroid-lipofuscinosis, neuronal 3 (Cln3), a G1 cyclin that promotes transcription of many genes to trigger the G1/S transition in budding yeast. It specifically binds the CLN3 mRNA and localizes it into discrete cytoplasmic loci that may locally restrict Cln3 synthesis to modulate cell cycle progression. Moreover, Whi3 plays a key role in cell fate determination in budding yeast. The RRM domain is essential for Whi3 function. Whi4 is a partially redundant homolog of Whi3, also containing one RRM. Some uncharacterized family members of this subfamily contain two RRMs; their RRM1 shows high sequence homology to the RRM of RNA-binding protein with multiple splicing (RBP-MS)-like proteins. Length = 79

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL---QALIQYPDVQTAVVAKEALEGH 198
           + N+    T + L  +FS FG ++ + +     G     A +++   + A  A EAL G 
Sbjct: 3   VGNLPPDTTEEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKALEALNGK 62

Query: 199 CIYDGGFCKLHIS 211
            +      KL +S
Sbjct: 63  ELDG---RKLKVS 72

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240756 cd12310, RRM3_Spen, RNA recognition motif 3 in the Spen (split end) protein family

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 148 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204
             +L  L   F  FG +++I  +D      A I+Y  ++ A  AKEAL G  +   G
Sbjct: 9   WTSLAELEREFDRFGAIRRID-YDPGRNY-AYIEYESIEAAQAAKEALRGFPLGGPG 63

This subfamily corresponds to the RRM3 domain in the Spen (split end) protein family which includes RNA binding motif protein 15 (RBM15), putative RNA binding motif protein 15B (RBM15B) and similar proteins found in Metazoa. RBM15, also termed one-twenty two protein 1 (OTT1), conserved in eukaryotes, is a novel mRNA export factor and is a novel component of the NXF1 pathway. It binds to NXF1 and serves as receptor for the RNA export element RTE. It also possess mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RNA-binding protein 15B (RBM15B), also termed one twenty-two 3 (OTT3), is a paralog of RBM15 and therefore has post-transcriptional regulatory activity. It is a nuclear protein sharing with RBM15 the association with the splicing factor compartment and the nuclear envelope as well as the binding to mRNA export factors NXF1 and Aly/REF. Members in this family belong to the Spen (split end) protein family, which shares a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. . Length = 72

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 15/105 (14%), Positives = 20/105 (19%), Gaps = 5/105 (4%)

Query: 233 PSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQS 292
              P           Q  P                    Q  +  P+ A      P    
Sbjct: 178 QVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLP 237

Query: 293 --MPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPR 335
              P +    +         P       P Q        A PPP+
Sbjct: 238 QQPPPLQQPQFPGLSQQMPPPPPQP---PQQQQQPPQPQAQPPPQ 279

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL---QALIQYPDVQTAVVAKEALEGH 198
           + N+    T + L  +FS FGP++ I +     G     A +++ D + A  A EAL G 
Sbjct: 3   VGNLPPDTTEEDLKDLFSKFGPIESIRIVRDETGRSKGFAFVEFEDEEDAEKALEALNGK 62

Query: 199 CIYD 202
            +  
Sbjct: 63  ELGG 66

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|240869 cd12423, RRM3_PTBP1_like, RNA recognition motif 3 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEAL 195
           VLL S  N +  VT D L  +F  +G V ++  +F+K     ALIQ  D Q A  A   L
Sbjct: 1   VLLVSNLNEE-MVTPDALFTLFGVYGDVVRVKILFNKKD--TALIQMADPQQAQTALTHL 57

Query: 196 EGHCIYDGGFCKLHISYSRH 215
            G  ++     KL ++ S+H
Sbjct: 58  NGIRLHGK---KLRVTLSKH 74

This subfamily corresponds to the RRM3 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), and similar proteins found in Metazoa. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 also contains four RRMs. ROD1 coding protein Rod1 is a mammalian PTB homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It may play a role controlling differentiation in mammals. All members in this family contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 74

>gnl|CDD|240810 cd12364, RRM_RDM1, RNA recognition motif of RAD52 motif-containing protein 1 (RDM1) and similar proteins

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 3  YIWPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASS 58
          Y+W +S K  + ++  S      FS FG ++ +  F      T GF A V+F     AS 
Sbjct: 4  YVWGISPKLTEEEIYES--LCSAFSQFGLLYSVKVFPNAAVATPGFYAFVKFYSARAASR 61

Query: 59 AKNALDGR 66
          A+ A +G+
Sbjct: 62 AQKACNGK 69

This subfamily corresponds to the RRM of RDM1, also termed RAD52 homolog B, a novel factor involved in the cellular response to the anti-cancer drug cisplatin in vertebrates. RDM1 contains a small RD motif that shares with the recombination and repair protein RAD52, and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The RD motif is responsible for the acidic pH-dependent DNA-binding properties of RDM1. It interacts with ss- and dsDNA, and may act as a DNA-damage recognition factor by recognizing the distortions of the double helix caused by cisplatin-DNA adducts in vitro. In addition, due to the presence of RRM, RDM1 can bind to RNA as well as DNA. . Length = 81

>gnl|CDD|240875 cd12429, RRM_DNAJC17, RNA recognition motif in the DnaJ homolog subfamily C member 17

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 152 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 198
           D L  +FS +G V  + +  K  G  A++++   + A  A E   G 
Sbjct: 19  DELRKIFSKYGDVSDVVVSSKKKG-SAIVEFASKKAAEAAVENECGL 64

The CD corresponds to the RRM of some eukaryotic DnaJ homolog subfamily C member 17 and similar proteins. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Members in this family contains an N-terminal DnaJ domain or J-domain, which mediates the interaction with Hsp70. They also contains a RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), at the C-terminus, which may play an essential role in RNA binding. . Length = 74

>gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 144 NMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGGLQ---ALIQYPDVQTAVVAKEALEGH 198
           N+ Y  T + L  +FS  GPV    +  D++ G        ++ D++TA  A   L G+
Sbjct: 5   NIPYDATEEQLIEIFSEVGPVVSFRLVTDRDTGKPKGYGFCEFEDIETAASAIRNLNGY 63

This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 17/101 (16%), Positives = 22/101 (21%), Gaps = 8/101 (7%)

Query: 242 PSILGQQPVPMVGATANQYNGAQFAPP--------PPEQPMMHQPTAAGWGAVPPASQSM 293
           PS+ G  P P         +  Q   P          E  +  +  A      P      
Sbjct: 123 PSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQ 182

Query: 294 PMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPP 334
            M       P    P  P        G          +P P
Sbjct: 183 GMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAP 223

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|241058 cd12614, RRM1_PUB1, RNA recognition motif 1 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 144 NMQYAVTLDVLHMVFSAFGPVQKIA-MFDKN--GGLQALIQYPDVQTAVVAKEALEGHCI 200
           N+   VT D+L  +F   GPVQ +  + DKN  G     ++Y     A +A + L G  I
Sbjct: 5   NLDPRVTEDILKQIFQVGGPVQNVKIIPDKNNKGVNYGFVEYHQSHDAEIALQTLNGRQI 64

Query: 201 YD 202
            +
Sbjct: 65  EN 66

This subgroup corresponds to the RRM1 of yeast protein PUB1, also termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein. PUB1 has been identified as both, a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP), which may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. It is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 74

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGGL-QALIQYPDVQTAVVAKEALEGHC 199
           + N+  +VT + L   FS +G V+ + +  +K+     A +++   + A  A + L G  
Sbjct: 3   VRNLPPSVTEEDLREFFSPYGKVEGVRLVRNKDRPRGFAFVEFASPEDAEAALKKLNGLV 62

Query: 200 I 200
           +
Sbjct: 63  L 63

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 21/111 (18%), Positives = 26/111 (23%), Gaps = 11/111 (9%)

Query: 233 PSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQS 292
              P     P  L QQP P+           QF     + P             P     
Sbjct: 224 SQAPAQPPLPPQLPQQPPPL--------QQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQ 275

Query: 293 MPMMGN---HPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 340
            P       HP +P G     P   Q  +             P  R   +Q
Sbjct: 276 PPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQ 326

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|240756 cd12310, RRM3_Spen, RNA recognition motif 3 in the Spen (split end) protein family

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 23 AHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 70
             F  FG + +I  ++    + A +++   E A +AK AL G  +  
Sbjct: 16 EREFDRFGAIRRID-YDPGRNY-AYIEYESIEAAQAAKEALRGFPLGG 61

This subfamily corresponds to the RRM3 domain in the Spen (split end) protein family which includes RNA binding motif protein 15 (RBM15), putative RNA binding motif protein 15B (RBM15B) and similar proteins found in Metazoa. RBM15, also termed one-twenty two protein 1 (OTT1), conserved in eukaryotes, is a novel mRNA export factor and is a novel component of the NXF1 pathway. It binds to NXF1 and serves as receptor for the RNA export element RTE. It also possess mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RNA-binding protein 15B (RBM15B), also termed one twenty-two 3 (OTT3), is a paralog of RBM15 and therefore has post-transcriptional regulatory activity. It is a nuclear protein sharing with RBM15 the association with the splicing factor compartment and the nuclear envelope as well as the binding to mRNA export factors NXF1 and Aly/REF. Members in this family belong to the Spen (split end) protein family, which shares a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. . Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	100.0
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	100.0
KOG1190	492	consensus Polypyrimidine tract-binding protein [RN	100.0
KOG1190	492	consensus Polypyrimidine tract-binding protein [RN	100.0
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.97
KOG1456	494	consensus Heterogeneous nuclear ribonucleoprotein	99.97
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.97
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	99.97
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.95
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.94
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.94
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.93
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	99.93
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.91
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.91
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.9
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	99.89
KOG1456	494	consensus Heterogeneous nuclear ribonucleoprotein	99.89
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	99.88
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.87
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.87
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	99.87
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.86
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.85
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	99.85
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	99.84
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	99.82
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	99.81
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	99.79
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	99.78
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	99.77
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	99.75
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.7
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	99.7
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	99.68
KOG1457	284	consensus RNA binding protein (contains RRM repeat	99.68
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	99.63
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	99.62
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	99.59
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	99.57
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.56
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	99.52
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	99.52
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.46
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.45
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	99.43
KOG0107	195	consensus Alternative splicing factor SRp20/9G8 (R	99.42
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.41
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	99.41
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.39
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.39
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	99.38
KOG0122	270	consensus Translation initiation factor 3, subunit	99.38
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	99.33
KOG0107	195	consensus Alternative splicing factor SRp20/9G8 (R	99.32
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.3
PLN03120	260	nucleic acid binding protein; Provisional	99.3
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.29
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	99.28
KOG1548	382	consensus Transcription elongation factor TAT-SF1	99.25
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	99.25
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	99.24
PLN03213	759	repressor of silencing 3; Provisional	99.23
KOG4207	256	consensus Predicted splicing factor, SR protein su	99.22
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	99.22
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	99.22
smart00362	72	RRM_2 RNA recognition motif.	99.21
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	99.19
PLN03121	243	nucleic acid binding protein; Provisional	99.17
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	99.16
smart00360	71	RRM RNA recognition motif.	99.15
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	99.14
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.13
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.13
PLN03120	260	nucleic acid binding protein; Provisional	99.13
PLN03213	759	repressor of silencing 3; Provisional	99.09
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	99.09
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.08
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	99.07
smart00362	72	RRM_2 RNA recognition motif.	99.05
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	99.04
smart00361	70	RRM_1 RNA recognition motif.	99.01
smart00360	71	RRM RNA recognition motif.	99.01
KOG4207	256	consensus Predicted splicing factor, SR protein su	99.0
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	99.0
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	99.0
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	98.98
KOG0122	270	consensus Translation initiation factor 3, subunit	98.98
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	98.97
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	98.96
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	98.95
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	98.94
PLN03121	243	nucleic acid binding protein; Provisional	98.94
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	98.93
COG0724	306	RNA-binding proteins (RRM domain) [General functio	98.92
smart00361	70	RRM_1 RNA recognition motif.	98.91
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	98.91
KOG0112	975	consensus Large RNA-binding protein (RRM superfami	98.86
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	98.85
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	98.84
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	98.8
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	98.8
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	98.77
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	98.76
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	98.75
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	98.73
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	98.71
KOG4660	549	consensus Protein Mei2, essential for commitment t	98.69
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	98.57
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	98.56
KOG4660	549	consensus Protein Mei2, essential for commitment t	98.51
KOG4454	267	consensus RNA binding protein (RRM superfamily) [G	98.51
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	98.49
KOG1457	284	consensus RNA binding protein (contains RRM repeat	98.49
KOG4454	267	consensus RNA binding protein (RRM superfamily) [G	98.46
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	98.42
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	98.41
KOG4208	214	consensus Nucleolar RNA-binding protein NIFK [Gene	98.37
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	98.36
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	98.35
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	98.33
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	98.28
KOG2193	584	consensus IGF-II mRNA-binding protein IMP, contain	98.28
KOG0533	243	consensus RRM motif-containing protein [RNA proces	98.23
KOG4208	214	consensus Nucleolar RNA-binding protein NIFK [Gene	98.21
KOG4210	285	consensus Nuclear localization sequence binding pr	98.18
KOG0151	877	consensus Predicted splicing regulator, contains R	98.18
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	98.17
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	98.14
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	98.11
KOG1365	508	consensus RNA-binding protein Fusilli, contains RR	98.1
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	98.1
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	98.09
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	98.0
KOG4209	231	consensus Splicing factor RNPS1, SR protein superf	97.91
KOG0226	290	consensus RNA-binding proteins [General function p	97.91
KOG1548	382	consensus Transcription elongation factor TAT-SF1	97.91
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	97.89
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	97.83
KOG0533	243	consensus RRM motif-containing protein [RNA proces	97.78
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	97.72
COG5175	480	MOT2 Transcriptional repressor [Transcription]	97.64
KOG0151	877	consensus Predicted splicing regulator, contains R	97.58
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.58
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	97.55
KOG0115	275	consensus RNA-binding protein p54nrb (RRM superfam	97.55
KOG0226	290	consensus RNA-binding proteins [General function p	97.51
KOG1855	484	consensus Predicted RNA-binding protein [General f	97.39
KOG1996	378	consensus mRNA splicing factor [RNA processing and	97.38
KOG1365	508	consensus RNA-binding protein Fusilli, contains RR	97.31
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.2
KOG1996	378	consensus mRNA splicing factor [RNA processing and	97.19
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	97.07
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	97.05
KOG2416	718	consensus Acinus (induces apoptotic chromatin cond	97.0
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	97.0
KOG3152	278	consensus TBP-binding protein, activator of basal	96.93
KOG2314	698	consensus Translation initiation factor 3, subunit	96.92
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.88
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	96.79
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	96.7
KOG4209	231	consensus Splicing factor RNPS1, SR protein superf	96.68
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.67
KOG3152	278	consensus TBP-binding protein, activator of basal	96.67
KOG1995	351	consensus Conserved Zn-finger protein [General fun	96.62
KOG4285	350	consensus Mitotic phosphoprotein [Cell cycle contr	96.61
KOG4307	944	consensus RNA binding protein RBM12/SWAN [General	96.57
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	96.53
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	96.43
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	96.4
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	96.4
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	96.37
KOG2314	698	consensus Translation initiation factor 3, subunit	96.37
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	96.36
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	96.15
KOG1855	484	consensus Predicted RNA-binding protein [General f	96.0
KOG4307	944	consensus RNA binding protein RBM12/SWAN [General	95.81
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	95.6
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	95.55
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	95.51
KOG4574	1007	consensus RNA-binding protein (contains RRM and Pu	95.46
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	95.21
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	95.2
KOG4574	1007	consensus RNA-binding protein (contains RRM and Pu	95.19
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	94.96
KOG2193	584	consensus IGF-II mRNA-binding protein IMP, contain	94.38
KOG4285	350	consensus Mitotic phosphoprotein [Cell cycle contr	94.15
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	94.12
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	93.88
KOG2068	327	consensus MOT2 transcription factor [Transcription	93.62
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	93.59
KOG0112	975	consensus Large RNA-binding protein (RRM superfami	93.47
KOG4210	285	consensus Nuclear localization sequence binding pr	93.46
KOG2068	327	consensus MOT2 transcription factor [Transcription	93.05
KOG2416	718	consensus Acinus (induces apoptotic chromatin cond	93.04
KOG2591	684	consensus c-Mpl binding protein, contains La domai	92.16
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	92.03
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	91.39
PF03880	74	DbpA: DbpA RNA binding domain ; InterPro: IPR00558	91.13
KOG1995	351	consensus Conserved Zn-finger protein [General fun	90.98
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	90.56
KOG2893	341	consensus Zn finger protein [General function pred	89.51
KOG2318	650	consensus Uncharacterized conserved protein [Funct	88.65
PF07292	88	NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909	88.52
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	87.68
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	86.17
KOG2135	526	consensus Proteins containing the RNA recognition	85.92
KOG2135	526	consensus Proteins containing the RNA recognition	85.46
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	84.92
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	82.51

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=100.00  E-value=3.6e-34  Score=267.92  Aligned_cols=199  Identities=17%  Similarity=0.220  Sum_probs=158.0

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +++||+.+++|  |+||..||++.|+|.++++|.    +.+++||||+|+++++|++||+.||+.+|        -.|+.
T Consensus        84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei--------r~GK~  155 (506)
T KOG0117|consen   84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI--------RPGKL  155 (506)
T ss_pred             ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc--------cCCCE
Confidence            68999999999  999999999999999999987    45788999999999999999999999998        47999


Q ss_pred             EEEeeccCC-cccccccCcCCc--------------------------------CCCCCCCCCCC-----------CccC
Q 019494           82 LRITYSAHT-DLSVKFQSHRSR--------------------------------DYTNPYLPVAP-----------SAID  117 (340)
Q Consensus        82 l~v~~s~~~-~l~~~~~~~~~~--------------------------------~~~~~~~~~~~-----------~~~~  117 (340)
                      |.|+.|..+ +|++. +..|++                                .|.-.+.-...           +.+.
T Consensus       156 igvc~Svan~RLFiG-~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k  234 (506)
T KOG0117|consen  156 LGVCVSVANCRLFIG-NIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK  234 (506)
T ss_pred             eEEEEeeecceeEec-cCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence            999988744 45543 222222                                11100000000           0011


Q ss_pred             cC-CCccccCCCCCCCC----CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHH
Q 019494          118 AS-GQLSVGLDGKKLEP----ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK  192 (340)
Q Consensus       118 ~~-~~~~~~~~~~~~~~----~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~  192 (340)
                      .. +.++++|+....++    -++|+.|||.||..++|+|.|+++|++||.|++|+.+++    +|||+|.++++|.+|+
T Consensus       235 lwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm  310 (506)
T KOG0117|consen  235 LWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAM  310 (506)
T ss_pred             ecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHH
Confidence            11 34678887654433    368888999999999999999999999999999998743    7999999999999999


Q ss_pred             HHhcCCeeCCCCccEEEEEeecCCCCcccc
Q 019494          193 EALEGHCIYDGGFCKLHISYSRHTDLSIKV  222 (340)
Q Consensus       193 ~~lng~~i~~~~~~~l~v~~ak~~~~~~~~  222 (340)
                      +.|||++|.|.   .|.|++||+.+.+.+.
T Consensus       311 ~~~ngkeldG~---~iEvtLAKP~~k~k~~  337 (506)
T KOG0117|consen  311 KETNGKELDGS---PIEVTLAKPVDKKKKE  337 (506)
T ss_pred             HHhcCceecCc---eEEEEecCChhhhccc
Confidence            99999999999   9999999998765443

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=100.00  E-value=2.1e-32  Score=273.01  Aligned_cols=189  Identities=32%  Similarity=0.464  Sum_probs=159.9

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHh--cCCCCCccCCCCCCCCceE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL--DGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~l--ng~~i~~~~~~~~~~~~~l   82 (340)
                      +.-|||++++.+  |+||+++|++||+|.+|++++  +++||||+|.+.|+|++|++.|  ++..         +.|++|
T Consensus         2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~---------l~g~~l   70 (481)
T TIGR01649         2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIY---------IRGQPA   70 (481)
T ss_pred             ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCce---------EcCeEE
Confidence            445788888854  899999999999999999886  4568999999999999999986  4444         579999


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG  162 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG  162 (340)
                      +|+||+++++....+.+    +                         ....+++++.|+|.||++++|+++|+++|++||
T Consensus        71 ~v~~s~~~~~~~~~~~~----~-------------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G  121 (481)
T TIGR01649        71 FFNYSTSQEIKRDGNSD----F-------------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYG  121 (481)
T ss_pred             EEEecCCcccccCCCCc----c-------------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccC
Confidence            99999876543221100    0                         001236788899999999999999999999999


Q ss_pred             CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCccccCCCCCCCCCCCCCC
Q 019494          163 PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP  236 (340)
Q Consensus       163 ~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~d~~~p~~p  236 (340)
                      +|++|+|++++...+|||+|++.++|.+|++.|||..|+++ ||+|+|.|++...+.++++++++||||++.++
T Consensus       122 ~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~  194 (481)
T TIGR01649       122 KVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP  194 (481)
T ss_pred             CEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence            99999998776423599999999999999999999999987 78999999999999999999999999999886

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]

Probab=100.00  E-value=2.3e-32  Score=253.20  Aligned_cols=215  Identities=42%  Similarity=0.621  Sum_probs=177.6

Q ss_pred             cccccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      +-|+.+.+.-  .+-|-|+++|++||.|.+|+.+.|..+++|+|+|.|.+.|..|...|+|+.|+       -++|+|||
T Consensus       150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIy-------ngcCtLrI  222 (492)
T KOG1190|consen  150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIY-------NGCCTLRI  222 (492)
T ss_pred             eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCccc-------CceeEEEe
Confidence            3455555443  44789999999999999999999999999999999999999999999999998       58999999


Q ss_pred             eeccCCcccccccCcCCcCCCCCCCCCCCC-----------------------ccCcCCCccccCCCCCCCCC--CcEEE
Q 019494           85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPS-----------------------AIDASGQLSVGLDGKKLEPE--SNVLL  139 (340)
Q Consensus        85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~--s~vl~  139 (340)
                      +||+...++++++++|+|||++|.++.++.                       +++.....+.+.++ ..+.+  +.+|+
T Consensus       223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~-~~~~~~~n~vll  301 (492)
T KOG1190|consen  223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADG-KIESPSANVVLL  301 (492)
T ss_pred             ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhccccc-ccccCCCceEEE
Confidence            999999999999999999999999987721                       11111111112222 22333  46666


Q ss_pred             EEeecC-CCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494          140 ASIENM-QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       140 v~v~nl-~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~  218 (340)
                        |.|| .+.||.|.|+.+|+.||+|.+|+|+.+++ ..|+|+|.|...|+-|+++|+|.+|+|+   .|+|.|||++.+
T Consensus       302 --vsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk---~lrvt~SKH~~v  375 (492)
T KOG1190|consen  302 --VSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGK---KLRVTLSKHTNV  375 (492)
T ss_pred             --EecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCc---eEEEeeccCccc
Confidence              4444 57999999999999999999999987664 4799999999999999999999999998   999999999999


Q ss_pred             ccccCCCCCCCCCCCCC
Q 019494          219 SIKVNNDRSRDYTLPST  235 (340)
Q Consensus       219 ~~~~~~~~~~d~~~p~~  235 (340)
                      ++++..++.+++|....
T Consensus       376 qlp~egq~d~glT~dy~  392 (492)
T KOG1190|consen  376 QLPREGQEDQGLTKDYG  392 (492)
T ss_pred             cCCCCCCccccccccCC
Confidence            99998888777776553

>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]

Probab=100.00  E-value=2.8e-33  Score=259.29  Aligned_cols=224  Identities=38%  Similarity=0.551  Sum_probs=177.5

Q ss_pred             cCCCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           11 YLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        11 ~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      .|+|+++ |+||.+|+.+||+|+++++++++  .+|||||.|+++|...+.+....       ++++++.+|+|+||.++
T Consensus        35 nlp~e~t-E~elI~Lg~pFG~vtn~~~lkGk--nQAflem~d~~sAvtmv~~y~~~-------~p~lr~~~~yiq~sn~~  104 (492)
T KOG1190|consen   35 NLPWEVT-EEELISLGLPFGKVTNLLMLKGK--NQAFLEMADEESAVTMVNYYTSV-------TPVLRGQPIYIQYSNHS  104 (492)
T ss_pred             cCCcccc-HHHHHHhcccccceeeeeeeccc--hhhhhhhcchhhhhheeeccccc-------CccccCcceeehhhhHH
Confidence            4566666 58999999999999999998843  58999999999999988777654       46689999999999988


Q ss_pred             cccccccCcCCcCCCCCCCCCCCCccCcC-CCccc--cCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEE
Q 019494           91 DLSVKFQSHRSRDYTNPYLPVAPSAIDAS-GQLSV--GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI  167 (340)
Q Consensus        91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v  167 (340)
                      .+..+......|..+ ...  ..+..... ...+.  ...| ....++.+|.+.|+|+-+.||.|.|+++|++||.|.||
T Consensus       105 ~lkt~s~p~q~r~~~-vy~--~~s~~q~~~~~~s~~~~~~G-~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI  180 (492)
T KOG1190|consen  105 ELKTDSQPNQIRGQA-VYQ--AVSSVQEIVLPLSASAVVVG-NEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI  180 (492)
T ss_pred             HHhccCchhhhhhhh-HHh--hhhccccccccccccccccc-ccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence            776653222111100 000  00000000 00000  0112 33457899999999999999999999999999999999


Q ss_pred             EEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 019494          168 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ  247 (340)
Q Consensus       168 ~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~d~~~p~~p~~~~~~~~~g~  247 (340)
                      ..|.|+.||+|+|+|.|.++|+.|+.+|+|..|+++ ||+|||+|||..++++|++++++||||+|.+|.++.++++...
T Consensus       181 iTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~  259 (492)
T KOG1190|consen  181 ITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQL  259 (492)
T ss_pred             EEEecccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCCCccccccchh
Confidence            999999999999999999999999999999999997 9999999999999999999999999999999999888877544


Q ss_pred             CC
Q 019494          248 QP  249 (340)
Q Consensus       248 ~p  249 (340)
                      -+
T Consensus       260 ~~  261 (492)
T KOG1190|consen  260 MA  261 (492)
T ss_pred             hh
Confidence            33

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.97  E-value=7.4e-30  Score=254.65  Aligned_cols=198  Identities=30%  Similarity=0.467  Sum_probs=159.4

Q ss_pred             cccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494            9 RKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus         9 ~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      +||+.++.  .++++|+++|+.||+|.+|+++++...++|||+|.+.++|.+|++.|||+.|+       .++++|+|+|
T Consensus        98 ~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~-------~~~~~l~v~~  170 (481)
T TIGR01649        98 RVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIY-------NGCCTLKIEY  170 (481)
T ss_pred             EEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCccc-------CCceEEEEEE
Confidence            57887764  55899999999999999999988655568999999999999999999999986       3467999999


Q ss_pred             ccCCcccccccCcCCcCCCCCCCCCC-CCc--------cC-------------cCCCc-----------ccc--------
Q 019494           87 SAHTDLSVKFQSHRSRDYTNPYLPVA-PSA--------ID-------------ASGQL-----------SVG--------  125 (340)
Q Consensus        87 s~~~~l~~~~~~~~~~~~~~~~~~~~-~~~--------~~-------------~~~~~-----------~~~--------  125 (340)
                      |+...+.++.+.+++|||+++.++.. ...        ..             +.+..           ..+        
T Consensus       171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (481)
T TIGR01649       171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR  250 (481)
T ss_pred             ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence            99999999999999999999877510 000        00             00000           000        


Q ss_pred             ---------------CCCCCCCCCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHH
Q 019494          126 ---------------LDGKKLEPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV  189 (340)
Q Consensus       126 ---------------~~~~~~~~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~  189 (340)
                                     ..+....+++.+|+  |.||++ .+|+|+|+++|+.||.|++|+|+..++|+ |||+|.+.++|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~-afV~f~~~~~A~  327 (481)
T TIGR01649       251 YRPAYEAAPLAPAISSYGPAGGGPGSVLM--VSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKET-ALIEMADPYQAQ  327 (481)
T ss_pred             CcccccccccCccccccCCCCCCCCCEEE--EeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCE-EEEEECCHHHHH
Confidence                           00011134577877  889997 69999999999999999999998777786 999999999999


Q ss_pred             HHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494          190 VAKEALEGHCIYDGGFCKLHISYSRHTDLS  219 (340)
Q Consensus       190 ~A~~~lng~~i~~~~~~~l~v~~ak~~~~~  219 (340)
                      +|++.|||..|+|+   .|+|++++.....
T Consensus       328 ~Ai~~lng~~l~g~---~l~v~~s~~~~~~  354 (481)
T TIGR01649       328 LALTHLNGVKLFGK---PLRVCPSKQQNVQ  354 (481)
T ss_pred             HHHHHhCCCEECCc---eEEEEEccccccc
Confidence            99999999999999   9999999876543

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]

Probab=99.97  E-value=2.3e-29  Score=230.97  Aligned_cols=208  Identities=31%  Similarity=0.457  Sum_probs=175.3

Q ss_pred             cCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeecc
Q 019494           11 YLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA   88 (340)
Q Consensus        11 ~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~   88 (340)
                      .++++.  ..|.||.+..+.||.|.-|.++..+  .+|+|||+|++.|+.+++.-....|+       +.|..-.+.||.
T Consensus        35 hvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~--r~alvefedi~~akn~Vnfaa~n~i~-------i~gq~Al~NySt  105 (494)
T KOG1456|consen   35 HVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK--RQALVEFEDIEGAKNCVNFAADNQIY-------IAGQQALFNYST  105 (494)
T ss_pred             EEeccccccchhHHHHHHhcCCceEEEEecccc--ceeeeeeccccchhhheehhccCccc-------ccCchhhcccch
Confidence            444444  3489999999999999999998854  46999999999999999977777776       788888889988


Q ss_pred             CCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE
Q 019494           89 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA  168 (340)
Q Consensus        89 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~  168 (340)
                      .+++....                                .....+++||+++|.|.-+.+|.|.|+.++...|+|.+|+
T Consensus       106 sq~i~R~g--------------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIv  153 (494)
T KOG1456|consen  106 SQCIERPG--------------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIV  153 (494)
T ss_pred             hhhhccCC--------------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEE
Confidence            77654321                                0112358999999999999999999999999999999999


Q ss_pred             EEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCccccCCCCCCCCCCCCCCCC----------
Q 019494          169 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMV----------  238 (340)
Q Consensus       169 i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~d~~~p~~p~~----------  238 (340)
                      ||+|+ |.+|.|||++.+.|++|+++|||..|+.+ ||+|+|+|||++++++.+|+.++||||.|.++..          
T Consensus       154 Ifkkn-gVQAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r  231 (494)
T KOG1456|consen  154 IFKKN-GVQAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDR  231 (494)
T ss_pred             EEecc-ceeeEEeechhHHHHHHHhhccccccccc-ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCcc
Confidence            99985 77899999999999999999999999998 9999999999999999999999999999987331          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcCC
Q 019494          239 NSQPSILGQQPVPMVGATANQYN  261 (340)
Q Consensus       239 ~~~~~~~g~~p~~~~g~~~~~~~  261 (340)
                      ..++.++|..|..++|+.++++.
T Consensus       232 ~~~p~~~~~~pss~~G~h~~y~s  254 (494)
T KOG1456|consen  232 QRQPAPLGYHPSSRGGGHSGYYS  254 (494)
T ss_pred             ccCCCccCCChhhcCCCCCCCcc
Confidence            23567778888888776655443

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.97  E-value=1.2e-28  Score=234.95  Aligned_cols=159  Identities=17%  Similarity=0.262  Sum_probs=132.8

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...|||.+++.+  |++|+++|+.||+|.+|+|++    +.+++||||+|.|+++|++|++.|||..|         .++
T Consensus       107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---------~gr  177 (346)
T TIGR01659       107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---------RNK  177 (346)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---------CCc
Confidence            456899888854  899999999999999998876    23567899999999999999999999884         699


Q ss_pred             eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494           81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA  160 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~  160 (340)
                      +|+|++++......                                       .+..|+  |.||+..+|+|+|+++|++
T Consensus       178 ~i~V~~a~p~~~~~---------------------------------------~~~~lf--V~nLp~~vtee~L~~~F~~  216 (346)
T TIGR01659       178 RLKVSYARPGGESI---------------------------------------KDTNLY--VTNLPRTITDDQLDTIFGK  216 (346)
T ss_pred             eeeeeccccccccc---------------------------------------ccceeE--EeCCCCcccHHHHHHHHHh
Confidence            99999976431100                                       123455  8999999999999999999


Q ss_pred             cCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          161 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       161 fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      ||+|++|+|+.++     +|+ |||+|+++++|++|++.||+..+.+. ...|+|.+++...
T Consensus       217 fG~V~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~~~g~-~~~l~V~~a~~~~  276 (346)
T TIGR01659       217 YGQIVQKNILRDKLTGTPRGV-AFVRFNKREEAQEAISALNNVIPEGG-SQPLTVRLAEEHG  276 (346)
T ss_pred             cCCEEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCccc
Confidence            9999999987643     365 99999999999999999999998774 3489999988653

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=5.6e-29  Score=220.14  Aligned_cols=171  Identities=19%  Similarity=0.349  Sum_probs=138.6

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +|++.++.+  -|+||+.|.+||+|+++++++    .++|+|+||.|-.+++|++||..|||+-         +++|.||
T Consensus        65 vfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW---------lG~R~IR  135 (321)
T KOG0148|consen   65 VFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW---------LGRRTIR  135 (321)
T ss_pred             EEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee---------eccceee
Confidence            566666644  589999999999999999988    4688899999999999999999999998         5799999


Q ss_pred             EeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019494           84 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP  163 (340)
Q Consensus        84 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~  163 (340)
                      -.|+.++...   ...+...|....                    ....+.++.  ||++|+..-+|||+|++.|+.||.
T Consensus       136 TNWATRKp~e---~n~~~ltfdeV~--------------------NQssp~Nts--VY~G~I~~~lte~~mr~~Fs~fG~  190 (321)
T KOG0148|consen  136 TNWATRKPSE---MNGKPLTFDEVY--------------------NQSSPDNTS--VYVGNIASGLTEDLMRQTFSPFGP  190 (321)
T ss_pred             ccccccCccc---cCCCCccHHHHh--------------------ccCCCCCce--EEeCCcCccccHHHHHHhcccCCc
Confidence            9999877411   111111110000                    001123444  669999988999999999999999


Q ss_pred             eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494          164 VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS  219 (340)
Q Consensus       164 v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~  219 (340)
                      |.+|++|+.++  +|||.|++.|+|.+||..+||++|.|.   .+||.|.|....-
T Consensus       191 I~EVRvFk~qG--YaFVrF~tkEaAahAIv~mNntei~G~---~VkCsWGKe~~~~  241 (321)
T KOG0148|consen  191 IQEVRVFKDQG--YAFVRFETKEAAAHAIVQMNNTEIGGQ---LVRCSWGKEGDDG  241 (321)
T ss_pred             ceEEEEecccc--eEEEEecchhhHHHHHHHhcCceeCce---EEEEeccccCCCC
Confidence            99999999885  699999999999999999999999999   9999999987654

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.95  E-value=2.9e-26  Score=233.29  Aligned_cols=180  Identities=16%  Similarity=0.240  Sum_probs=134.2

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ..+||.+++.+  |++|+++|+.||+|.++.+++.   ..+++|||+|.+.++|.+|++.|||+.|.     ....++.|
T Consensus       179 ~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~-----~~~~g~~l  253 (562)
T TIGR01628       179 TNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG-----LAKEGKKL  253 (562)
T ss_pred             CeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEec-----ccccceee
Confidence            34788888744  8999999999999999988862   35668999999999999999999999852     00128889


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG  162 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG  162 (340)
                      +|..++.+.......   .+.+.....                  .......+..|+  |+||+..+|+++|+++|++||
T Consensus       254 ~v~~a~~k~er~~~~---~~~~~~~~~------------------~~~~~~~~~~l~--V~nl~~~~~~~~L~~~F~~~G  310 (562)
T TIGR01628       254 YVGRAQKRAEREAEL---RRKFEELQQ------------------ERKMKAQGVNLY--VKNLDDTVTDEKLRELFSECG  310 (562)
T ss_pred             EeecccChhhhHHHH---HhhHHhhhh------------------hhhcccCCCEEE--EeCCCCccCHHHHHHHHHhcC
Confidence            998876442110000   000000000                  000001233444  999999999999999999999


Q ss_pred             CeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494          163 PVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS  219 (340)
Q Consensus       163 ~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~  219 (340)
                      +|++|+++.+.    +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|++.++.+
T Consensus       311 ~i~~~~i~~d~~g~~~g~-gfV~f~~~~~A~~A~~~~~g~~~~gk---~l~V~~a~~k~~~  367 (562)
T TIGR01628       311 EITSAKVMLDEKGVSRGF-GFVCFSNPEEANRAVTEMHGRMLGGK---PLYVALAQRKEQR  367 (562)
T ss_pred             CeEEEEEEECCCCCcCCe-EEEEeCCHHHHHHHHHHhcCCeeCCc---eeEEEeccCcHHH
Confidence            99999987543    565 99999999999999999999999999   9999999876543

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.94  E-value=2.5e-25  Score=223.06  Aligned_cols=169  Identities=16%  Similarity=0.191  Sum_probs=134.5

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ..++||||++++.+  |++|+++|++||+|.+|.+++    +++++||||+|.+.++|++|++.|||+.|         .
T Consensus       105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---------~  175 (612)
T TIGR01645       105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---------G  175 (612)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---------e
Confidence            45689999999854  899999999999999998875    34678999999999999999999999884         6


Q ss_pred             CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494           79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF  158 (340)
Q Consensus        79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F  158 (340)
                      |+.|+|.++.......     ...+...                       ......+.  |||+||+.++++++|+++|
T Consensus       176 GR~IkV~rp~~~p~a~-----~~~~~~~-----------------------~~~~~~~r--LfVgnLp~~vteedLk~lF  225 (612)
T TIGR01645       176 GRNIKVGRPSNMPQAQ-----PIIDMVQ-----------------------EEAKKFNR--IYVASVHPDLSETDIKSVF  225 (612)
T ss_pred             cceeeecccccccccc-----ccccccc-----------------------ccccccce--EEeecCCCCCCHHHHHHHH
Confidence            9999998644221000     0000000                       00011334  4499999999999999999


Q ss_pred             cccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          159 SAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       159 ~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      +.||.|++++|.+.     ++|| |||+|++.++|.+|++.|||..|.|+   .|+|.++...
T Consensus       226 s~FG~I~svrl~~D~~tgksKGf-GFVeFe~~e~A~kAI~amNg~elgGr---~LrV~kAi~p  284 (612)
T TIGR01645       226 EAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKCVTP  284 (612)
T ss_pred             hhcCCeeEEEEEecCCCCCcCCe-EEEEECCHHHHHHHHHHhCCCeeCCe---EEEEEecCCC
Confidence            99999999998753     4576 99999999999999999999999999   9999987654

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.94  E-value=4.6e-25  Score=211.63  Aligned_cols=198  Identities=15%  Similarity=0.232  Sum_probs=136.3

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||.+++.+  |++|+++|++||+|.+++++..    ..+++|||+|.+.++|++|++.|||..+.       ....
T Consensus        89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-------g~~~  161 (352)
T TIGR01661        89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS-------GCTE  161 (352)
T ss_pred             cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-------CCce
Confidence            457899999854  8999999999999999988752    35678999999999999999999998753       2346


Q ss_pred             eEEEeeccCCcccccc-cCcCCcCCCCCCC----------CCCCCccC--------------------------------
Q 019494           81 TLRITYSAHTDLSVKF-QSHRSRDYTNPYL----------PVAPSAID--------------------------------  117 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~-~~~~~~~~~~~~~----------~~~~~~~~--------------------------------  117 (340)
                      +|+|.+++........ .......+.++..          ........                                
T Consensus       162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (352)
T TIGR01661       162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA  241 (352)
T ss_pred             eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence            8899988643211100 0000000000000          00000000                                


Q ss_pred             -cCCC-----cc----ccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEc
Q 019494          118 -ASGQ-----LS----VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQY  182 (340)
Q Consensus       118 -~~~~-----~~----~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F  182 (340)
                       ....     ..    .+.........+.+|+  |+||++.+++++|+++|++||.|++|+|..+.     +|+ |||+|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~-aFV~F  318 (352)
T TIGR01661       242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIF--VYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY-GFVSM  318 (352)
T ss_pred             ccCCCccccccccccccCCCCCCCCCCCcEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce-EEEEE
Confidence             0000     00    0000000112234566  89999999999999999999999999987543     676 99999


Q ss_pred             CChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          183 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       183 ~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      ++.++|.+|++.|||..|.|+   .|+|+|...+.
T Consensus       319 ~~~~~A~~Ai~~lnG~~~~gr---~i~V~~~~~~~  350 (352)
T TIGR01661       319 TNYDEAAMAILSLNGYTLGNR---VLQVSFKTNKA  350 (352)
T ss_pred             CCHHHHHHHHHHhCCCEECCe---EEEEEEccCCC
Confidence            999999999999999999999   99999986553

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.93  E-value=4e-25  Score=212.04  Aligned_cols=160  Identities=16%  Similarity=0.282  Sum_probs=133.7

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +-.+|||++++.+  |+||+++|+.||+|.+|++++    +.+++||||+|.+.++|++||+.|||..|         .|
T Consensus         2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---------~g   72 (352)
T TIGR01661         2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---------QN   72 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE---------CC
Confidence            3468999999854  999999999999999999876    23567999999999999999999999884         69


Q ss_pred             ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494           80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS  159 (340)
Q Consensus        80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~  159 (340)
                      ++|+|+|++.+.-..                                       ....|+  |.||+..+++++|+++|+
T Consensus        73 ~~i~v~~a~~~~~~~---------------------------------------~~~~l~--v~~l~~~~~~~~l~~~f~  111 (352)
T TIGR01661        73 KTIKVSYARPSSDSI---------------------------------------KGANLY--VSGLPKTMTQHELESIFS  111 (352)
T ss_pred             eeEEEEeeccccccc---------------------------------------ccceEE--ECCccccCCHHHHHHHHh
Confidence            999999987542110                                       123344  899999999999999999


Q ss_pred             ccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          160 AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       160 ~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      .||.|..+++..+     .+|+ |||+|++.++|.+|++.|||..+.+. ...|+|.|+....
T Consensus       112 ~~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~A~~ai~~l~g~~~~g~-~~~i~v~~a~~~~  172 (352)
T TIGR01661       112 PFGQIITSRILSDNVTGLSKGV-GFIRFDKRDEADRAIKTLNGTTPSGC-TEPITVKFANNPS  172 (352)
T ss_pred             ccCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCCCC
Confidence            9999999998653     2465 99999999999999999999988774 3478999987654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=99.93  E-value=1.4e-25  Score=209.49  Aligned_cols=165  Identities=18%  Similarity=0.273  Sum_probs=136.7

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..+|++-++.+  |+||+++|++||.|.+|.++|    +.++++|||.|.+.++|.+|+..|+++...    |  ..-.+
T Consensus        35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl----p--G~~~p  108 (510)
T KOG0144|consen   35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL----P--GMHHP  108 (510)
T ss_pred             hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccccc----C--CCCcc
Confidence            35699999976  999999999999999999988    347788999999999999999999998753    2  23457


Q ss_pred             EEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019494           82 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF  161 (340)
Q Consensus        82 l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f  161 (340)
                      |.|.|+...+..+                                      ...+.||  |+-|+..+||.+++++|++|
T Consensus       109 vqvk~Ad~E~er~--------------------------------------~~e~KLF--vg~lsK~~te~evr~iFs~f  148 (510)
T KOG0144|consen  109 VQVKYADGERERI--------------------------------------VEERKLF--VGMLSKQCTENEVREIFSRF  148 (510)
T ss_pred             eeecccchhhhcc--------------------------------------ccchhhh--hhhccccccHHHHHHHHHhh
Confidence            8888877432211                                      0134466  88999999999999999999


Q ss_pred             CCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494          162 GPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS  219 (340)
Q Consensus       162 G~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~  219 (340)
                      |.|++|.|+++    +|| ||||.|.++|.|..|++.|||..-..++..+|.|.|+++++.+
T Consensus       149 G~Ied~~ilrd~~~~sRG-caFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk  209 (510)
T KOG0144|consen  149 GHIEDCYILRDPDGLSRG-CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK  209 (510)
T ss_pred             Cccchhhheecccccccc-eeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence            99999999873    466 6999999999999999999999766665679999999887654

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.91  E-value=7.1e-24  Score=215.80  Aligned_cols=154  Identities=16%  Similarity=0.232  Sum_probs=128.5

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .|||++++.+  |++|+++|++||+|.+|++++    +.+++||||+|.+.++|++|++.||+..|         .|++|
T Consensus         2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i---------~gk~i   72 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL---------GGKPI   72 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCeeE
Confidence            5899999854  999999999999999999876    34567999999999999999999999885         69999


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG  162 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG  162 (340)
                      +|.|++.+....+                                     .....  |+|.||+.++|+++|+++|++||
T Consensus        73 ~i~~s~~~~~~~~-------------------------------------~~~~~--vfV~nLp~~~~~~~L~~~F~~~G  113 (562)
T TIGR01628        73 RIMWSQRDPSLRR-------------------------------------SGVGN--IFVKNLDKSVDNKALFDTFSKFG  113 (562)
T ss_pred             Eeecccccccccc-------------------------------------cCCCc--eEEcCCCccCCHHHHHHHHHhcC
Confidence            9999864311000                                     00223  44999999999999999999999


Q ss_pred             CeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          163 PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       163 ~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      .|+.|++...    ++|+ |||+|++.++|.+|++.|||..+.++   .|.|...+
T Consensus       114 ~i~~~~i~~~~~g~skg~-afV~F~~~e~A~~Ai~~lng~~~~~~---~i~v~~~~  165 (562)
T TIGR01628       114 NILSCKVATDENGKSRGY-GFVHFEKEESAKAAIQKVNGMLLNDK---EVYVGRFI  165 (562)
T ss_pred             CcceeEeeecCCCCcccE-EEEEECCHHHHHHHHHHhcccEecCc---eEEEeccc
Confidence            9999998653    3565 99999999999999999999999998   88886543

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.91  E-value=3.3e-23  Score=205.70  Aligned_cols=168  Identities=18%  Similarity=0.273  Sum_probs=132.8

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +...|||.+++.+  |++|+++|+.||+|.+|.+++    +.+++||||+|.+.++|.+||. |+|..+         .|
T Consensus        88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~---------~g  157 (457)
T TIGR01622        88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML---------LG  157 (457)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE---------CC
Confidence            3456899999854  899999999999999998876    3457899999999999999995 899884         69


Q ss_pred             ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494           80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS  159 (340)
Q Consensus        80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~  159 (340)
                      ++|.|.+++...........      .                     .....+.+.+|+  |+||+..+|+++|+++|+
T Consensus       158 ~~i~v~~~~~~~~~~~~~~~------~---------------------~~~~~p~~~~l~--v~nl~~~~te~~l~~~f~  208 (457)
T TIGR01622       158 RPIIVQSSQAEKNRAAKAAT------H---------------------QPGDIPNFLKLY--VGNLHFNITEQELRQIFE  208 (457)
T ss_pred             eeeEEeecchhhhhhhhccc------c---------------------cCCCCCCCCEEE--EcCCCCCCCHHHHHHHHH
Confidence            99999987643111000000      0                     000012245666  899999999999999999


Q ss_pred             ccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          160 AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       160 ~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      .||.|.+|.|...     .+|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|++..
T Consensus       209 ~~G~i~~v~~~~d~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~i~g~---~i~v~~a~~~  266 (457)
T TIGR01622       209 PFGDIEDVQLHRDPETGRSKGF-GFIQFHDAEEAKEALEVMNGFELAGR---PIKVGYAQDS  266 (457)
T ss_pred             hcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhcCCcEECCE---EEEEEEccCC
Confidence            9999999998743     2465 99999999999999999999999998   9999998733

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.90  E-value=3.9e-23  Score=206.97  Aligned_cols=163  Identities=17%  Similarity=0.270  Sum_probs=130.2

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCc-eeEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~-V~~v~~~~-----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ..++|||.+++.+  +++|++.|+++++ |.+++++.     .++++||||+|.+.++|.+|++.|+...+.       +
T Consensus       137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~-------l  209 (578)
T TIGR01648       137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ-------L  209 (578)
T ss_pred             cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE-------e
Confidence            4678999999854  7899999999975 55555543     235678999999999999999988764432       5


Q ss_pred             CCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHH
Q 019494           78 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV  157 (340)
Q Consensus        78 ~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~  157 (340)
                      .++.|+|+|+..+.....    .                              .....++|+  |.||++++|+|+|+++
T Consensus       210 ~Gr~I~VdwA~p~~~~d~----~------------------------------~~~~~k~Lf--VgNL~~~~tee~L~~~  253 (578)
T TIGR01648       210 WGHVIAVDWAEPEEEVDE----D------------------------------VMAKVKILY--VRNLMTTTTEEIIEKS  253 (578)
T ss_pred             cCceEEEEeecccccccc----c------------------------------ccccccEEE--EeCCCCCCCHHHHHHH
Confidence            699999999875421100    0                              001234555  8999999999999999


Q ss_pred             Hccc--CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494          158 FSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       158 F~~f--G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~  218 (340)
                      |+.|  |+|++|++.+   + +|||+|+++++|.+|++.|||..|.++   .|+|+|+++.+.
T Consensus       254 F~~f~~G~I~rV~~~r---g-fAFVeF~s~e~A~kAi~~lnG~~i~Gr---~I~V~~Akp~~~  309 (578)
T TIGR01648       254 FSEFKPGKVERVKKIR---D-YAFVHFEDREDAVKAMDELNGKELEGS---EIEVTLAKPVDK  309 (578)
T ss_pred             HHhcCCCceEEEEeec---C-eEEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEccCCCc
Confidence            9999  9999998764   4 499999999999999999999999998   999999988654

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=99.89  E-value=6.7e-23  Score=180.70  Aligned_cols=156  Identities=17%  Similarity=0.284  Sum_probs=130.7

Q ss_pred             cccCCCCCCCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            9 RKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         9 ~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      -.||+--.+ +|||+.||...|+|.+|++++    +.+-+|+||.|.++++|++||+.|||..+         -.++|+|
T Consensus        46 vNYLPQ~MT-qdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---------Q~KTIKV  115 (360)
T KOG0145|consen   46 VNYLPQNMT-QDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---------QNKTIKV  115 (360)
T ss_pred             eeecccccC-HHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---------ccceEEE
Confidence            347777666 599999999999999999987    34567899999999999999999999884         6999999


Q ss_pred             eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019494           85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV  164 (340)
Q Consensus        85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v  164 (340)
                      +|++.+.-.++                                       ...  +||.+||..+|..||+++|++||.|
T Consensus       116 SyARPSs~~Ik---------------------------------------~aN--LYvSGlPktMtqkelE~iFs~fGrI  154 (360)
T KOG0145|consen  116 SYARPSSDSIK---------------------------------------DAN--LYVSGLPKTMTQKELEQIFSPFGRI  154 (360)
T ss_pred             EeccCChhhhc---------------------------------------ccc--eEEecCCccchHHHHHHHHHHhhhh
Confidence            99997644332                                       111  6699999999999999999999998


Q ss_pred             eEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          165 QKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       165 ~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      ..-+|+.+     ++|. +||.|+.+++|.+|++.|||..-.|- ..+|.|.|+....
T Consensus       155 ItSRiL~dqvtg~srGV-gFiRFDKr~EAe~AIk~lNG~~P~g~-tepItVKFannPs  210 (360)
T KOG0145|consen  155 ITSRILVDQVTGLSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGC-TEPITVKFANNPS  210 (360)
T ss_pred             hhhhhhhhcccceecce-eEEEecchhHHHHHHHhccCCCCCCC-CCCeEEEecCCcc
Confidence            87776543     3575 99999999999999999999987664 6699999987653

>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]

Probab=99.89  E-value=9.5e-22  Score=181.00  Aligned_cols=190  Identities=28%  Similarity=0.406  Sum_probs=155.0

Q ss_pred             CCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCccccc
Q 019494           16 LSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVK   95 (340)
Q Consensus        16 ~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~   95 (340)
                      +.|-+.|+.+|-..|+|.+|+|++| ++-||+|||.+.+.|++|...|||..||       -++|+|+|+|++..++++.
T Consensus       133 pItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIY-------sGCCTLKIeyAkP~rlnV~  204 (494)
T KOG1456|consen  133 PITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIY-------SGCCTLKIEYAKPTRLNVQ  204 (494)
T ss_pred             ccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhccccccc-------ccceeEEEEecCcceeeee
Confidence            3455789999999999999999987 6779999999999999999999999998       6899999999999999999


Q ss_pred             ccCcCCcCCCCCCCCC--CCCcc--C----------------c--CCCcc---------------------ccCCCCCCC
Q 019494           96 FQSHRSRDYTNPYLPV--APSAI--D----------------A--SGQLS---------------------VGLDGKKLE  132 (340)
Q Consensus        96 ~~~~~~~~~~~~~~~~--~~~~~--~----------------~--~~~~~---------------------~~~~~~~~~  132 (340)
                      .+...+|||+.|++..  .+++.  +                +  .+-.+                     .+.+.....
T Consensus       205 knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~  284 (494)
T KOG1456|consen  205 KNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGG  284 (494)
T ss_pred             ecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCC
Confidence            8888899999886531  11111  0                0  00000                     001111223


Q ss_pred             CCCcEEEEEeecCC-CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          133 PESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       133 ~~s~vl~v~v~nl~-~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      .++.|+.||  +|+ ..++.|.|++||+.||.|++|++++.+.|. |.||+.|..+.++|+..||+..++|+   +|.|.
T Consensus       285 ~~g~VmMVy--GLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gt-amVemgd~~aver~v~hLnn~~lfG~---kl~v~  358 (494)
T KOG1456|consen  285 APGCVMMVY--GLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGT-AMVEMGDAYAVERAVTHLNNIPLFGG---KLNVC  358 (494)
T ss_pred             CCCcEEEEE--eccccccchhhhhhhhhhcCceeeEEEeecccce-eEEEcCcHHHHHHHHHHhccCccccc---eEEEe
Confidence            568898855  554 478999999999999999999999988886 99999999999999999999999999   99999


Q ss_pred             eecCCCCc
Q 019494          212 YSRHTDLS  219 (340)
Q Consensus       212 ~ak~~~~~  219 (340)
                      +||...+.
T Consensus       359 ~SkQ~~v~  366 (494)
T KOG1456|consen  359 VSKQNFVS  366 (494)
T ss_pred             eccccccc
Confidence            99987654

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=99.88  E-value=2.1e-22  Score=180.20  Aligned_cols=145  Identities=19%  Similarity=0.285  Sum_probs=130.6

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      ..|||+|++.+  |.+|+.||++||+|.++.|+|    +||||..+|+..|..||+.|+|..|         .|..|.|+
T Consensus         3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtL---------hg~nInVe   69 (346)
T KOG0109|consen    3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTL---------HGVNINVE   69 (346)
T ss_pred             cchhccCCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhccccee---------cceEEEEE
Confidence            56899999954  899999999999999999986    5899999999999999999999984         69999999


Q ss_pred             eccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCee
Q 019494           86 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ  165 (340)
Q Consensus        86 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~  165 (340)
                      -|+.+..                                         .++.|+  |+|+...++.+||+..|++||.|.
T Consensus        70 aSksKsk-----------------------------------------~stkl~--vgNis~tctn~ElRa~fe~ygpvi  106 (346)
T KOG0109|consen   70 ASKSKSK-----------------------------------------ASTKLH--VGNISPTCTNQELRAKFEKYGPVI  106 (346)
T ss_pred             eccccCC-----------------------------------------Cccccc--cCCCCccccCHHHhhhhcccCCce
Confidence            8886621                                         255677  999999999999999999999999


Q ss_pred             EEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494          166 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH  215 (340)
Q Consensus       166 ~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~  215 (340)
                      ++.|.++    ++||+|+-.++|..|+..|||+++.|+   .|+|.++..
T Consensus       107 ecdivkd----y~fvh~d~~eda~~air~l~~~~~~gk---~m~vq~sts  149 (346)
T KOG0109|consen  107 ECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQGK---RMHVQLSTS  149 (346)
T ss_pred             eeeeecc----eeEEEEeeccchHHHHhcccccccccc---eeeeeeecc
Confidence            9999863    699999999999999999999999999   999998753

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.87  E-value=1.5e-21  Score=195.71  Aligned_cols=150  Identities=17%  Similarity=0.224  Sum_probs=122.6

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +.|||++++.+  |++|+++|++||+|.+|++++   +.+++||||+|.+.|+|++||+.||+..|        ..++.|
T Consensus        59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i--------~~Gr~l  130 (578)
T TIGR01648        59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI--------RPGRLL  130 (578)
T ss_pred             CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCee--------cCCccc
Confidence            67999999965  999999999999999998876   34677899999999999999999999886        346666


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG  162 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG  162 (340)
                      .|..+..                                             ++.|+  |.||+.++|+++|+++|++++
T Consensus       131 ~V~~S~~---------------------------------------------~~rLF--VgNLP~~~TeeeL~eeFskv~  163 (578)
T TIGR01648       131 GVCISVD---------------------------------------------NCRLF--VGGIPKNKKREEILEEFSKVT  163 (578)
T ss_pred             ccccccc---------------------------------------------CceeE--eecCCcchhhHHHHHHhhccc
Confidence            6654321                                             33455  899999999999999999997


Q ss_pred             C-eeEEEEEc------CCCCeEEEEEcCChHHHHHHHHHhcCC--eeCCCCccEEEEEeecCC
Q 019494          163 P-VQKIAMFD------KNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       163 ~-v~~v~i~~------~~~g~~afV~F~~~~~A~~A~~~lng~--~i~~~~~~~l~v~~ak~~  216 (340)
                      . |+++.++.      +++|| |||+|++.++|.+|++.|+..  .|.++   .|+|+|+.+.
T Consensus       164 egvv~vIv~~~~~~kgKnRGF-AFVeF~s~edAa~AirkL~~gki~l~Gr---~I~VdwA~p~  222 (578)
T TIGR01648       164 EGVVDVIVYHSAADKKKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH---VIAVDWAEPE  222 (578)
T ss_pred             CCceEEEEeccccccCccCce-EEEEcCCHHHHHHHHHHhhccceEecCc---eEEEEeeccc
Confidence            4 55555432      34676 999999999999999988743  57787   9999998754

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.87  E-value=3.3e-21  Score=193.80  Aligned_cols=184  Identities=18%  Similarity=0.276  Sum_probs=131.1

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.  +|++|+++|+.||.|..+.+++    +.+++||||+|.+.++|..|++.|||..|         .|+
T Consensus       295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---------~~~  365 (509)
T TIGR01642       295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---------GDN  365 (509)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---------CCe
Confidence            35799999985  4899999999999999998876    34678999999999999999999999985         599


Q ss_pred             eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCC----------CC
Q 019494           81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA----------VT  150 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~----------vt  150 (340)
                      .|+|.++..........  ..... .+ .........   ....    .....++++|+  +.|+...          ..
T Consensus       366 ~l~v~~a~~~~~~~~~~--~~~~~-~~-~~~~~~~~~---~~~~----~~~~~~s~v~~--l~N~~~~~~l~~d~~~~~~  432 (509)
T TIGR01642       366 KLHVQRACVGANQATID--TSNGM-AP-VTLLAKALS---QSIL----QIGGKPTKVVQ--LTNLVTGDDLMDDEEYEEI  432 (509)
T ss_pred             EEEEEECccCCCCCCcc--ccccc-cc-cccccccch---hhhc----cccCCCceEEE--eccCCchhHhcCcchHHHH
Confidence            99999986432111100  00000 00 000000000   0000    00123467777  6787421          12


Q ss_pred             HHHHHHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          151 LDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       151 ~~~L~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      .++|+++|++||.|++|+|++..        .|+ |||+|++.++|.+|++.|||..|.|+   .|.|+|....
T Consensus       433 ~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~-~fV~F~~~e~A~~A~~~lnGr~~~gr---~v~~~~~~~~  502 (509)
T TIGR01642       433 YEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGK-VFLEYADVRSAEKAMEGMNGRKFNDR---VVVAAFYGED  502 (509)
T ss_pred             HHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcce-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEeCHH
Confidence            36799999999999999997531        355 99999999999999999999999999   9999997654

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=99.87  E-value=8.3e-22  Score=165.67  Aligned_cols=158  Identities=17%  Similarity=0.227  Sum_probs=130.5

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      -+|+++++..  |+-|++||-+.|.|.++.+-+    ....+||||||.++|+|+-|++-||...++         |++|
T Consensus        11 tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY---------grpI   81 (203)
T KOG0131|consen   11 TLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY---------GRPI   81 (203)
T ss_pred             eEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc---------Ccee
Confidence            4799999853  789999999999999999876    235678999999999999999999987754         9999


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG  162 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG  162 (340)
                      +|..+.....++.                                      -+..||  |+||+..|++..|+++|+.||
T Consensus        82 rv~kas~~~~nl~--------------------------------------vganlf--vgNLd~~vDe~~L~dtFsafG  121 (203)
T KOG0131|consen   82 RVNKASAHQKNLD--------------------------------------VGANLF--VGNLDPEVDEKLLYDTFSAFG  121 (203)
T ss_pred             EEEeccccccccc--------------------------------------cccccc--ccccCcchhHHHHHHHHHhcc
Confidence            9997762211110                                      123456  999999999999999999999


Q ss_pred             CeeEE-EEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494          163 PVQKI-AMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS  219 (340)
Q Consensus       163 ~v~~v-~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~  219 (340)
                      .+.+. +|++     +.+|+ |||.|++.|.+.+|++.+||..+.++   .+.|+|++.++.+
T Consensus       122 ~l~~~P~i~rd~~tg~~~~~-g~i~~~sfeasd~ai~s~ngq~l~nr---~itv~ya~k~~~k  180 (203)
T KOG0131|consen  122 VLISPPKIMRDPDTGNPKGF-GFINYASFEASDAAIGSMNGQYLCNR---PITVSYAFKKDTK  180 (203)
T ss_pred             ccccCCcccccccCCCCCCC-eEEechhHHHHHHHHHHhccchhcCC---ceEEEEEEecCCC
Confidence            88774 4543     23455 99999999999999999999999999   9999999877655

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.86  E-value=8.2e-21  Score=190.98  Aligned_cols=184  Identities=19%  Similarity=0.205  Sum_probs=126.7

Q ss_pred             cccccccCCCCCCC--HHHHHHhhccc------------CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAF------------GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR   70 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~f------------G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~   70 (340)
                      +...+|||+|++.+  |++|+++|+.|            +.|.++.+.+  .++||||+|.+.|+|.+|| .|||..+  
T Consensus       173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al-~l~g~~~--  247 (509)
T TIGR01642       173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAM-ALDSIIY--  247 (509)
T ss_pred             ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhh-cCCCeEe--
Confidence            45678999999954  89999999975            3444554433  5678999999999999999 5999874  


Q ss_pred             cCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCC
Q 019494           71 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVT  150 (340)
Q Consensus        71 ~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt  150 (340)
                             .|+.|+|...+...-...  .........+...     ...... ..  ...........|+  |+||+..+|
T Consensus       248 -------~g~~l~v~r~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~-~~--~~~~~~~~~~~l~--v~nlp~~~~  308 (509)
T TIGR01642       248 -------SNVFLKIRRPHDYIPVPQ--ITPEVSQKNPDDN-----AKNVEK-LV--NSTTVLDSKDRIY--IGNLPLYLG  308 (509)
T ss_pred             -------eCceeEecCccccCCccc--cCCCCCCCCCccc-----cccccc-cc--ccccCCCCCCEEE--EeCCCCCCC
Confidence                   689999875432110000  0000000000000     000000 00  0000011245566  999999999


Q ss_pred             HHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          151 LDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       151 ~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      +++|+++|+.||.|+.+.|+..     ++|+ |||+|.+.++|..|++.|||..|.++   .|+|.++...
T Consensus       309 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~A~~~l~g~~~~~~---~l~v~~a~~~  375 (509)
T TIGR01642       309 EDQIKELLESFGDLKAFNLIKDIATGLSKGY-AFCEYKDPSVTDVAIAALNGKDTGDN---KLHVQRACVG  375 (509)
T ss_pred             HHHHHHHHHhcCCeeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEECccC
Confidence            9999999999999999988653     3565 99999999999999999999999998   9999998654

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.85  E-value=2.5e-20  Score=185.06  Aligned_cols=196  Identities=17%  Similarity=0.250  Sum_probs=132.6

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...|||++++.+  |++|+++|+.||.|.+|.+.+.    ..++||||+|.+.++|.+|++.|||..|         .|+
T Consensus       186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i---------~g~  256 (457)
T TIGR01622       186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL---------AGR  256 (457)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE---------CCE
Confidence            357899999844  8999999999999999988762    3567899999999999999999999874         699


Q ss_pred             eEEEeeccCCcccccc-cC---c-----CCcCCCCCC-------CCCC----CCccCcC-------------C--C---c
Q 019494           81 TLRITYSAHTDLSVKF-QS---H-----RSRDYTNPY-------LPVA----PSAIDAS-------------G--Q---L  122 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~-~~---~-----~~~~~~~~~-------~~~~----~~~~~~~-------------~--~---~  122 (340)
                      +|+|.|++........ ..   .     .......+.       +...    ...+.+.             +  .   .
T Consensus       257 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (457)
T TIGR01622       257 PIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIP  336 (457)
T ss_pred             EEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccc
Confidence            9999997632111000 00   0     000000000       0000    0000000             0  0   0


Q ss_pred             ---cc----cCC------CCCCCCCCcEEEEEeecCCCCCC----------HHHHHHHHcccCCeeEEEEE-cCCCCeEE
Q 019494          123 ---SV----GLD------GKKLEPESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMF-DKNGGLQA  178 (340)
Q Consensus       123 ---~~----~~~------~~~~~~~s~vl~v~v~nl~~~vt----------~~~L~~~F~~fG~v~~v~i~-~~~~g~~a  178 (340)
                         ..    .+.      ......++++|+  |.||....+          .++|++.|++||.|++|.|. ....|+ +
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~-~  413 (457)
T TIGR01622       337 SRYATGALAIMARNSFVPSTNNNLATTCLV--LSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGK-I  413 (457)
T ss_pred             ccccccccccccCCCCCCcccCCCCCcEEE--EecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCcee-E
Confidence               00    000      000123466766  778854443          36799999999999999987 444675 9


Q ss_pred             EEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          179 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       179 fV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      ||+|.+.++|.+|++.|||..+.|+   .|.+.|.....
T Consensus       414 fV~F~~~e~A~~A~~~lnGr~f~gr---~i~~~~~~~~~  449 (457)
T TIGR01622       414 YLKFSSVDAALAAFQALNGRYFGGK---MITAAFVVNDV  449 (457)
T ss_pred             EEEECCHHHHHHHHHHhcCcccCCe---EEEEEEEcHHH
Confidence            9999999999999999999999999   99999976554

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=99.85  E-value=6.5e-20  Score=159.79  Aligned_cols=197  Identities=22%  Similarity=0.336  Sum_probs=139.8

Q ss_pred             ccccccccCCCCCCC--HHHHHH----hhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494            4 IWPLSRKYLQWQLSA--SGERAH----VFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN   76 (340)
Q Consensus         4 ~~~~~~~~l~~~~~~--ee~L~~----lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~   76 (340)
                      +.|+.-|||.|+..-  .+||+.    ||++||+|.+|+..+ .+..++|||.|.+.+.|..|+..|+|..++       
T Consensus         6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy-------   78 (221)
T KOG4206|consen    6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY-------   78 (221)
T ss_pred             cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc-------
Confidence            567778899888743  566666    999999999999887 345568999999999999999999999976       


Q ss_pred             CCCceEEEeeccCC-ccccccc---CcCCcCCCCCCCC---CCCCccCcCCC-c--cccCCC-CCCCCCCcEEEEEeecC
Q 019494           77 MGPCTLRITYSAHT-DLSVKFQ---SHRSRDYTNPYLP---VAPSAIDASGQ-L--SVGLDG-KKLEPESNVLLASIENM  145 (340)
Q Consensus        77 ~~~~~l~v~~s~~~-~l~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~-~--~~~~~~-~~~~~~s~vl~v~v~nl  145 (340)
                        |++++|+|++.+ ++..+..   ..+......-.+.   ........+.. .  .+.... ....+++.+|+  +.|+
T Consensus        79 --gK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf--~~ni  154 (221)
T KOG4206|consen   79 --GKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILF--LTNI  154 (221)
T ss_pred             --CchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEE--EecC
Confidence              999999999865 2222200   0000000000000   00000000000 0  000000 22346788888  7899


Q ss_pred             CCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          146 QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       146 ~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |.+++.+.|..+|+.|....+|++.....+. |||+|.+...|..|.+.|+|..|.-+  ..|+|+|++
T Consensus       155 P~es~~e~l~~lf~qf~g~keir~i~~~~~i-Afve~~~d~~a~~a~~~lq~~~it~~--~~m~i~~a~  220 (221)
T KOG4206|consen  155 PSESESEMLSDLFEQFPGFKEIRLIPPRSGI-AFVEFLSDRQASAAQQALQGFKITKK--NTMQITFAK  220 (221)
T ss_pred             CcchhHHHHHHHHhhCcccceeEeccCCCce-eEEecchhhhhHHHhhhhccceeccC--ceEEecccC
Confidence            9999999999999999999999988766565 99999999999999999999999833  399999876

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=99.84  E-value=8.4e-20  Score=161.19  Aligned_cols=192  Identities=18%  Similarity=0.290  Sum_probs=134.8

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .||++.++.+  ..||+++|++||.|...+++-    +.+++.+||.|...++|+.||..|||..-.       ....+|
T Consensus       129 NLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~-------g~tepI  201 (360)
T KOG0145|consen  129 NLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS-------GCTEPI  201 (360)
T ss_pred             ceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC-------CCCCCe
Confidence            4699999965  789999999999987665543    346678999999999999999999998732       445689


Q ss_pred             EEeeccCCccccc------ccCcCCcCCCCCCCCCCC-------------------CccCcC-CCccccCCCCCCCCCCc
Q 019494           83 RITYSAHTDLSVK------FQSHRSRDYTNPYLPVAP-------------------SAIDAS-GQLSVGLDGKKLEPESN  136 (340)
Q Consensus        83 ~v~~s~~~~l~~~------~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~~~~~~~~~~~~~~~s~  136 (340)
                      .|.|++.......      -.....|.+..|.-....                   -++|+- +-..+.+.+  .....-
T Consensus       202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~--~~~~g~  279 (360)
T KOG0145|consen  202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPG--GPGGGW  279 (360)
T ss_pred             EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCC--CCCCee
Confidence            9999874321110      001112333322110000                   001110 000011111  112356


Q ss_pred             EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      +||  |.||..+.+|..|+++|+.||-|+.|++.++-     +|| +||.+.+-++|..|+..|||+.+.++   .|.|+
T Consensus       280 ciF--vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGf-gFVtMtNYdEAamAi~sLNGy~lg~r---vLQVs  353 (360)
T KOG0145|consen  280 CIF--VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGF-GFVTMTNYDEAAMAIASLNGYRLGDR---VLQVS  353 (360)
T ss_pred             EEE--EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccce-eEEEecchHHHHHHHHHhcCccccce---EEEEE
Confidence            777  66999999999999999999999999987532     476 99999999999999999999999999   99999


Q ss_pred             eecC
Q 019494          212 YSRH  215 (340)
Q Consensus       212 ~ak~  215 (340)
                      |...
T Consensus       354 FKtn  357 (360)
T KOG0145|consen  354 FKTN  357 (360)
T ss_pred             EecC
Confidence            9543

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=2.5e-19  Score=171.98  Aligned_cols=153  Identities=20%  Similarity=0.218  Sum_probs=130.6

Q ss_pred             ccccCCCCCCCHHHHHHhhcccCceeEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494            8 SRKYLQWQLSASGERAHVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus         8 ~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      .-+|++ -.++|++|+++|+++|.|++|++.+. .+-+||||.|.+.++|.+|+++||...         +.|++|+|-|
T Consensus         2 ~sl~vg-~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~---------~~~~~~rim~   71 (369)
T KOG0123|consen    2 ASLYVG-PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDV---------LKGKPIRIMW   71 (369)
T ss_pred             CceecC-CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcc---------cCCcEEEeeh
Confidence            458999 44457999999999999999988762 256789999999999999999999887         5799999999


Q ss_pred             ccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE
Q 019494           87 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK  166 (340)
Q Consensus        87 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~  166 (340)
                      |....                                           + .  |+|.||++.++..+|+++|+.||+|+.
T Consensus        72 s~rd~-------------------------------------------~-~--~~i~nl~~~~~~~~~~d~f~~~g~ilS  105 (369)
T KOG0123|consen   72 SQRDP-------------------------------------------S-L--VFIKNLDESIDNKSLYDTFSEFGNILS  105 (369)
T ss_pred             hccCC-------------------------------------------c-e--eeecCCCcccCcHHHHHHHHhhcCeeE
Confidence            88651                                           1 1  569999999999999999999999999


Q ss_pred             EEEEcCCCC--eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCcc
Q 019494          167 IAMFDKNGG--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI  220 (340)
Q Consensus       167 v~i~~~~~g--~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~  220 (340)
                      |++..+..|  .+ ||+|++.++|.+|++.|||..+.++   .|.|.....+..+.
T Consensus       106 ~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---ki~vg~~~~~~er~  157 (369)
T KOG0123|consen  106 CKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---KIYVGLFERKEERE  157 (369)
T ss_pred             EEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC---eeEEeeccchhhhc
Confidence            998766543  24 9999999999999999999999998   99998776655443

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=99.81  E-value=3.2e-20  Score=170.58  Aligned_cols=162  Identities=15%  Similarity=0.216  Sum_probs=129.3

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      =++|+|++.+.-+  |+.||..|.+||.|.+|.+-.    .+.|+||||||+-.|.|+-|++.|||..         ++|
T Consensus       112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m---------lGG  182 (544)
T KOG0124|consen  112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM---------LGG  182 (544)
T ss_pred             HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc---------ccC
Confidence            3789999988866  899999999999999997743    4567789999999999999999999987         589


Q ss_pred             ceEEEeeccCC---cccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHH
Q 019494           80 CTLRITYSAHT---DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM  156 (340)
Q Consensus        80 ~~l~v~~s~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~  156 (340)
                      +.|+|.....-   .-.++......                                 .+--.|||..+..+.+++||+.
T Consensus       183 RNiKVgrPsNmpQAQpiID~vqeeA---------------------------------k~fnRiYVaSvHpDLSe~DiKS  229 (544)
T KOG0124|consen  183 RNIKVGRPSNMPQAQPIIDMVQEEA---------------------------------KKFNRIYVASVHPDLSETDIKS  229 (544)
T ss_pred             ccccccCCCCCcccchHHHHHHHHH---------------------------------HhhheEEeeecCCCccHHHHHH
Confidence            99999843311   00011000000                                 1112367888889999999999


Q ss_pred             HHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          157 VFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       157 ~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +|+.||+|++|.+-+     +.+|+ +||+|.+..+...|+..||-..+.|+   -|||.-+
T Consensus       230 VFEAFG~I~~C~LAr~pt~~~HkGy-GfiEy~n~qs~~eAiasMNlFDLGGQ---yLRVGk~  287 (544)
T KOG0124|consen  230 VFEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKC  287 (544)
T ss_pred             HHHhhcceeeEEeeccCCCCCccce-eeEEeccccchHHHhhhcchhhcccc---eEecccc
Confidence            999999999999853     44676 99999999999999999999999998   8888743

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=99.79  E-value=1.8e-18  Score=166.26  Aligned_cols=174  Identities=18%  Similarity=0.216  Sum_probs=131.8

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      -||++.++-  +.++|.++|+.+|.|..+.+..    +...+|+||+|.=.|++++|+...++..         +.|+.|
T Consensus         7 TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k---------f~Gr~l   77 (678)
T KOG0127|consen    7 TLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK---------FEGRIL   77 (678)
T ss_pred             eEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc---------ccceec
Confidence            356666652  2589999999999999987765    2356789999999999999999999987         479999


Q ss_pred             EEeeccCCcccc--cccC----cCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHH
Q 019494           83 RITYSAHTDLSV--KFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM  156 (340)
Q Consensus        83 ~v~~s~~~~l~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~  156 (340)
                      +|..++++...-  ....    .+.....++.-                   ....-+...|.  |.|||+.+..++|..
T Consensus        78 ~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k-------------------~~v~~~k~rLI--IRNLPf~~k~~dLk~  136 (678)
T KOG0127|consen   78 NVDPAKKRARSEEVEKGENKAVEKPIEQKRPTK-------------------AKVDLPKWRLI--IRNLPFKCKKPDLKN  136 (678)
T ss_pred             ccccccccccchhcccccchhhhcccccCCcch-------------------hhccCccceEE--eecCCcccCcHHHHH
Confidence            999998653211  1000    00000000000                   00001133444  999999999999999


Q ss_pred             HHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          157 VFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       157 ~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      +|++||.|..|.|+++.    .|| |||+|.+..+|..|++.+||.+|.|+   +|-|+||-.+
T Consensus       137 vFs~~G~V~Ei~IP~k~dgklcGF-aFV~fk~~~dA~~Al~~~N~~~i~gR---~VAVDWAV~K  196 (678)
T KOG0127|consen  137 VFSNFGKVVEIVIPRKKDGKLCGF-AFVQFKEKKDAEKALEFFNGNKIDGR---PVAVDWAVDK  196 (678)
T ss_pred             HHhhcceEEEEEcccCCCCCccce-EEEEEeeHHHHHHHHHhccCceecCc---eeEEeeeccc
Confidence            99999999999999765    367 99999999999999999999999999   9999999544

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=99.78  E-value=5e-18  Score=163.15  Aligned_cols=195  Identities=21%  Similarity=0.303  Sum_probs=132.5

Q ss_pred             cccccccCCCCCCCHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            5 WPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         5 ~~~~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      |-|..=+|+|.|.. +||+.+|+.||.|.+|.|.++    .. +||||+|.+..+|..|++.+||..|         .|+
T Consensus       118 ~rLIIRNLPf~~k~-~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i---------~gR  186 (678)
T KOG0127|consen  118 WRLIIRNLPFKCKK-PDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKI---------DGR  186 (678)
T ss_pred             ceEEeecCCcccCc-HHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCcee---------cCc
Confidence            34555578999987 699999999999999999773    34 5799999999999999999999996         699


Q ss_pred             eEEEeeccCCcccccc--------------------cCcCCcCCCCCCC---CCCCCccCcC--------------CCcc
Q 019494           81 TLRITYSAHTDLSVKF--------------------QSHRSRDYTNPYL---PVAPSAIDAS--------------GQLS  123 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~--------------------~~~~~~~~~~~~~---~~~~~~~~~~--------------~~~~  123 (340)
                      +|.|.|+-.++..-..                    .++...++.+-+.   .......|+.              .+..
T Consensus       187 ~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vD  266 (678)
T KOG0127|consen  187 PVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVD  266 (678)
T ss_pred             eeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccc
Confidence            9999998765432110                    1111111110000   0000000100              0000


Q ss_pred             ccC-CCC--------C-----CCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCC
Q 019494          124 VGL-DGK--------K-----LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPD  184 (340)
Q Consensus       124 ~~~-~~~--------~-----~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~  184 (340)
                      -.. ++.        .     ......++|  |.||++++|+++|.++|++||+|..+.|+..     +.|. |||+|.+
T Consensus       267 d~e~S~~~~~~k~~q~k~~~en~~~~~tVF--vRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGt-AFv~Fkt  343 (678)
T KOG0127|consen  267 DEESSGKKESDKKAQNKTTRENITEGKTVF--VRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGT-AFVKFKT  343 (678)
T ss_pred             cccccccCcccchhccccccccccccceEE--EecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccc-eEEEecc
Confidence            000 000        0     001125555  9999999999999999999999999887542     2464 9999999


Q ss_pred             hHHHHHHHHHh-----cC-CeeCCCCccEEEEEeecCC
Q 019494          185 VQTAVVAKEAL-----EG-HCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       185 ~~~A~~A~~~l-----ng-~~i~~~~~~~l~v~~ak~~  216 (340)
                      ..+|..||++.     .| ..|.|+   .|+|..+-..
T Consensus       344 ~~~~~~ci~~Aspa~e~g~~ll~GR---~Lkv~~Av~R  378 (678)
T KOG0127|consen  344 QIAAQNCIEAASPASEDGSVLLDGR---LLKVTLAVTR  378 (678)
T ss_pred             HHHHHHHHHhcCccCCCceEEEecc---EEeeeeccch
Confidence            99999999987     34 567888   9999988543

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.77  E-value=2.2e-18  Score=170.28  Aligned_cols=165  Identities=19%  Similarity=0.330  Sum_probs=132.5

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEeeec-------CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKT-------AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~-------~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      +++|+.|+..+  .++|..+|+..|.|.+|.|.++.       +.+||||+|.+.++|++|++.|+|..|         .
T Consensus       516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---------d  586 (725)
T KOG0110|consen  516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---------D  586 (725)
T ss_pred             hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---------c
Confidence            34777666633  68999999999999999876633       237899999999999999999999985         6


Q ss_pred             CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494           79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF  158 (340)
Q Consensus        79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F  158 (340)
                      |..|.|++|..+.....   .+...                           .....+.|+  |.|++...+..++++||
T Consensus       587 GH~l~lk~S~~k~~~~~---gK~~~---------------------------~kk~~tKIl--VRNipFeAt~rEVr~LF  634 (725)
T KOG0110|consen  587 GHKLELKISENKPASTV---GKKKS---------------------------KKKKGTKIL--VRNIPFEATKREVRKLF  634 (725)
T ss_pred             CceEEEEeccCcccccc---ccccc---------------------------cccccceee--eeccchHHHHHHHHHHH
Confidence            99999999882211100   00000                           001134566  89999999999999999


Q ss_pred             cccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          159 SAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       159 ~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      +.||.|..|+|+.+     .+|| |||+|-+..+|..|+++|..+.++|+   .|.+.|++...
T Consensus       635 ~aFGqlksvRlPKK~~k~a~rGF-~Fv~f~t~~ea~nA~~al~STHlyGR---rLVLEwA~~d~  694 (725)
T KOG0110|consen  635 TAFGQLKSVRLPKKIGKGAHRGF-GFVDFLTPREAKNAFDALGSTHLYGR---RLVLEWAKSDN  694 (725)
T ss_pred             hcccceeeeccchhhcchhhccc-eeeeccCcHHHHHHHHhhcccceech---hhheehhccch
Confidence            99999999999876     2677 99999999999999999999999999   99999998764

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=99.75  E-value=1.9e-17  Score=146.84  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=69.7

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ++++.||  |..||.+..+.||.++|-.||.|++.|+|-++     +-| +||.|++..+|+.||.+|||..|.-+   +
T Consensus       283 PeGCNlF--IYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF-GFVSfDNp~SaQaAIqAMNGFQIGMK---R  356 (371)
T KOG0146|consen  283 PEGCNLF--IYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF-GFVSFDNPASAQAAIQAMNGFQIGMK---R  356 (371)
T ss_pred             CCcceEE--EEeCchhhccHHHHHHhccccceeeeeeeehhccccccce-eeEecCCchhHHHHHHHhcchhhhhh---h
Confidence            5678888  66999999999999999999999999987533     334 99999999999999999999999988   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|.+.++++.
T Consensus       357 LKVQLKRPkda  367 (371)
T KOG0146|consen  357 LKVQLKRPKDA  367 (371)
T ss_pred             hhhhhcCcccc
Confidence            99998666654

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.70  E-value=9.7e-16  Score=154.31  Aligned_cols=74  Identities=18%  Similarity=0.241  Sum_probs=65.4

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.+  |++|+++|+.||+|.++++.+    +.+++||||+|.+.++|.+|++.|||..         ++|+
T Consensus       204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e---------lgGr  274 (612)
T TIGR01645       204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD---------LGGQ  274 (612)
T ss_pred             cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe---------eCCe
Confidence            368999999854  899999999999999999886    2367799999999999999999999998         4799


Q ss_pred             eEEEeeccC
Q 019494           81 TLRITYSAH   89 (340)
Q Consensus        81 ~l~v~~s~~   89 (340)
                      .|+|.++..
T Consensus       275 ~LrV~kAi~  283 (612)
T TIGR01645       275 YLRVGKCVT  283 (612)
T ss_pred             EEEEEecCC
Confidence            999998763

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.7e-16  Score=152.45  Aligned_cols=160  Identities=18%  Similarity=0.252  Sum_probs=126.4

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      .+||.|+..  |.++|+++|+.||+|.+|++..  ..+++| ||+|.++++|++|++.|||..         +.+++|+|
T Consensus        78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~l---------l~~kki~v  147 (369)
T KOG0123|consen   78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGML---------LNGKKIYV  147 (369)
T ss_pred             eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcc---------cCCCeeEE
Confidence            378888774  3689999999999999998887  337788 999999999999999999987         57999999


Q ss_pred             eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019494           85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV  164 (340)
Q Consensus        85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v  164 (340)
                      .....+.............+                                 -.|+|.|....++++.|.+.|+.+|.|
T Consensus       148 g~~~~~~er~~~~~~~~~~~---------------------------------t~v~vk~~~~~~~~~~l~~~f~~~g~i  194 (369)
T KOG0123|consen  148 GLFERKEEREAPLGEYKKRF---------------------------------TNVYVKNLEEDSTDEELKDLFSAYGSI  194 (369)
T ss_pred             eeccchhhhcccccchhhhh---------------------------------hhhheeccccccchHHHHHhhcccCcc
Confidence            87665432211111011111                                 115578888899999999999999999


Q ss_pred             eEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494          165 QKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH  215 (340)
Q Consensus       165 ~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~  215 (340)
                      +.+.+..+    .+++ +||+|++.++|..|++.||+....+.   .+.|.-+..
T Consensus       195 ~s~~v~~~~~g~~~~~-gfv~f~~~e~a~~av~~l~~~~~~~~---~~~V~~aqk  245 (369)
T KOG0123|consen  195 TSVAVMRDSIGKSKGF-GFVNFENPEDAKKAVETLNGKIFGDK---ELYVGRAQK  245 (369)
T ss_pred             eEEEEeecCCCCCCCc-cceeecChhHHHHHHHhccCCcCCcc---ceeeccccc
Confidence            99998753    3565 99999999999999999999998877   777776544

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=99.68  E-value=1.2e-15  Score=128.94  Aligned_cols=169  Identities=19%  Similarity=0.235  Sum_probs=125.8

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +...+||++|++.|  |.||++||.+||.|.+|.+... ..-.||||||+|..+|+.||..-+|..         +.++.
T Consensus         4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYd---------ydg~r   74 (241)
T KOG0105|consen    4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYD---------YDGCR   74 (241)
T ss_pred             cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccc---------cCcce
Confidence            45679999999998  8999999999999999988653 234579999999999999999999988         46999


Q ss_pred             EEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCC-CCCCC--CcEEEEEeecCCCCCCHHHHHHHH
Q 019494           82 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGK-KLEPE--SNVLLASIENMQYAVTLDVLHMVF  158 (340)
Q Consensus        82 l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--s~vl~v~v~nl~~~vt~~~L~~~F  158 (340)
                      |+|+|...-.-.    +.+.-.+..            .+  .-++.+. .--++  .....|.|..||.+-++++|++..
T Consensus        75 LRVEfprggr~s----~~~~G~y~g------------gg--rgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHm  136 (241)
T KOG0105|consen   75 LRVEFPRGGRSS----SDRRGSYSG------------GG--RGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHM  136 (241)
T ss_pred             EEEEeccCCCcc----cccccccCC------------CC--CCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHH
Confidence            999998744211    000000000            00  0001000 00112  233556689999999999999999


Q ss_pred             cccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          159 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       159 ~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      .+-|.|....+.++  | .+.|+|...|+...|+..|..+.+...
T Consensus       137 ReaGdvCfadv~rD--g-~GvV~~~r~eDMkYAvr~ld~~~~~se  178 (241)
T KOG0105|consen  137 REAGDVCFADVQRD--G-VGVVEYLRKEDMKYAVRKLDDQKFRSE  178 (241)
T ss_pred             HhhCCeeeeeeecc--c-ceeeeeeehhhHHHHHHhhccccccCc
Confidence            99999998877765  4 499999999999999999998877554

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=99.68  E-value=6.4e-16  Score=134.07  Aligned_cols=188  Identities=19%  Similarity=0.217  Sum_probs=123.2

Q ss_pred             ccccCCCCCCC--HHHHHHhhccc-CceeEEEEeeec----CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAF-GFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~f-G~V~~v~~~~~~----~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      .-||++.++.|  -.||+.||.+| |.-....-+..+    .+..|||+|.+..+|..|++.|||..+++      -.+.
T Consensus        35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp------E~~s  108 (284)
T KOG1457|consen   35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP------ETGS  108 (284)
T ss_pred             ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc------ccCc
Confidence            34799999987  78999999999 554433222211    23579999999999999999999999862      4688


Q ss_pred             eEEEeeccCCcccccccCcC----C------------c----CCC-----CCCC------CCCCCccCcC--C-------
Q 019494           81 TLRITYSAHTDLSVKFQSHR----S------------R----DYT-----NPYL------PVAPSAIDAS--G-------  120 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~----~------------~----~~~-----~~~~------~~~~~~~~~~--~-------  120 (340)
                      +|+|++++......+.....    +            +    +.+     +|+.      ..+....+..  .       
T Consensus       109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~  188 (284)
T KOG1457|consen  109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS  188 (284)
T ss_pred             eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence            99999988432111100000    0            0    000     0000      0000000000  0       


Q ss_pred             ----CccccC---CCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHH
Q 019494          121 ----QLSVGL---DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE  193 (340)
Q Consensus       121 ----~~~~~~---~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~  193 (340)
                          .....|   .+......+.+||  |.||..+||||+|+.+|++|-.+..++|-.+.+-..||++|++.+.|..|+.
T Consensus       189 ~~P~a~a~l~ks~q~~~~~~acstlf--ianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~  266 (284)
T KOG1457|consen  189 KAPSANAHLEKSSQGGSGARACSTLF--IANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMN  266 (284)
T ss_pred             cCCcccchhhhhhcccccchhhhhHh--hhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHH
Confidence                000000   0111223456777  8999999999999999999999999888776644579999999999999999


Q ss_pred             HhcCCeeCCC
Q 019494          194 ALEGHCIYDG  203 (340)
Q Consensus       194 ~lng~~i~~~  203 (340)
                      .|+|..|...
T Consensus       267 ~lqg~~~s~~  276 (284)
T KOG1457|consen  267 HLQGNLLSSS  276 (284)
T ss_pred             Hhhcceeccc
Confidence            9999887543

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=99.63  E-value=5.4e-15  Score=142.94  Aligned_cols=201  Identities=18%  Similarity=0.213  Sum_probs=134.9

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ..|+.|+|++|+-.  +|++|+.+|++||.|..|.+.+    +.+++|+||+|.+.++|.+|++.|||.+         +
T Consensus       275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe---------l  345 (549)
T KOG0147|consen  275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE---------L  345 (549)
T ss_pred             ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce---------e
Confidence            35777899999874  4899999999999999998876    3477889999999999999999999966         5


Q ss_pred             CCceEEEeeccCC-cccccccCcCCcCCC---CC------------C--------CCCCC-Ccc----------CcCCCc
Q 019494           78 GPCTLRITYSAHT-DLSVKFQSHRSRDYT---NP------------Y--------LPVAP-SAI----------DASGQL  122 (340)
Q Consensus        78 ~~~~l~v~~s~~~-~l~~~~~~~~~~~~~---~~------------~--------~~~~~-~~~----------~~~~~~  122 (340)
                      .|+.|+|..-..+ +...........|..   .-            +        ++... .+.          ...+..
T Consensus       346 AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~  425 (549)
T KOG0147|consen  346 AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVV  425 (549)
T ss_pred             cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCc
Confidence            7999998764422 110000000000000   00            0        00000 000          000000


Q ss_pred             cc-----cCCCCCCCCCCcEEEEEeecCCCCCC----------HHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHH
Q 019494          123 SV-----GLDGKKLEPESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT  187 (340)
Q Consensus       123 ~~-----~~~~~~~~~~s~vl~v~v~nl~~~vt----------~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~  187 (340)
                      .+     ....+....++++++  +.|+-..-|          .|++.+-+++||+|..|.+.+.+-|+ .||.|.+.+.
T Consensus       426 ~~~~~~p~~~~p~~~i~t~C~l--L~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~-VYvrc~s~~~  502 (549)
T KOG0147|consen  426 RVRSVDPADASPAFDIPTQCLL--LSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGC-VYVRCPSAEA  502 (549)
T ss_pred             CccccCccccccccCCccHHHH--HhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCce-EEEecCcHHH
Confidence            00     000111225677877  667643222          34677778999999999887766675 9999999999


Q ss_pred             HHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494          188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLS  219 (340)
Q Consensus       188 A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~  219 (340)
                      |.+|+.+|||..+.++   .|..+|-......
T Consensus       503 A~~a~~alhgrWF~gr---~Ita~~~~~~~Y~  531 (549)
T KOG0147|consen  503 AGTAVKALHGRWFAGR---MITAKYLPLERYH  531 (549)
T ss_pred             HHHHHHHHhhhhhccc---eeEEEEeehhhhh
Confidence            9999999999999999   9999997665543

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=99.62  E-value=6.1e-15  Score=138.67  Aligned_cols=77  Identities=25%  Similarity=0.339  Sum_probs=66.0

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CC---eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g---~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      +.+..||  |.+||.+.-+.+|-..|..||.|+..++|-++ .+   +++||.|++..+|..||..|||..|..+   +|
T Consensus       422 peGanlf--iyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~K---rl  496 (510)
T KOG0144|consen  422 PEGANLF--IYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSK---RL  496 (510)
T ss_pred             CCcccee--eeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccc---cc
Confidence            3455677  77999999999999999999999999987544 22   2599999999999999999999999999   89


Q ss_pred             EEEeec
Q 019494          209 HISYSR  214 (340)
Q Consensus       209 ~v~~ak  214 (340)
                      +|.+.+
T Consensus       497 kVQlk~  502 (510)
T KOG0144|consen  497 KVQLKR  502 (510)
T ss_pred             eEEeee
Confidence            998643

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=99.59  E-value=3.2e-15  Score=144.53  Aligned_cols=155  Identities=20%  Similarity=0.331  Sum_probs=119.0

Q ss_pred             CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCccc
Q 019494           18 ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS   93 (340)
Q Consensus        18 ~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~   93 (340)
                      .+.||+++|+.+|+|.+|+++.    +.+++.|||||.|.++...|| .|.|+.         +-|-+|.|+.+......
T Consensus       192 ~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqr---------llg~pv~vq~sEaeknr  261 (549)
T KOG0147|consen  192 PPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQR---------LLGVPVIVQLSEAEKNR  261 (549)
T ss_pred             CchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCc---------ccCceeEecccHHHHHH
Confidence            3689999999999999998875    347778999999999999999 899988         46999999876532111


Q ss_pred             ccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-
Q 019494           94 VKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-  172 (340)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-  172 (340)
                      .. +..              .+.          .+.....+-..  ++|+||..++|+++|+.+|+.||.|+.|.+... 
T Consensus       262 ~a-~~s--------------~a~----------~~k~~~~p~~r--l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~  314 (549)
T KOG0147|consen  262 AA-NAS--------------PAL----------QGKGFTGPMRR--LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS  314 (549)
T ss_pred             HH-hcc--------------ccc----------cccccccchhh--hhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence            00 000              000          00000111111  559999999999999999999999999987544 


Q ss_pred             ----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          173 ----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       173 ----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                          .+|| +||+|.+.++|.+|++.|||.+|-|+   .|+|+..
T Consensus       315 ~tG~skgf-Gfi~f~~~~~ar~a~e~lngfelAGr---~ikV~~v  355 (549)
T KOG0147|consen  315 ETGRSKGF-GFITFVNKEDARKALEQLNGFELAGR---LIKVSVV  355 (549)
T ss_pred             ccccccCc-ceEEEecHHHHHHHHHHhccceecCc---eEEEEEe
Confidence                2576 99999999999999999999999999   8888865

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=99.57  E-value=4.7e-15  Score=130.58  Aligned_cols=162  Identities=18%  Similarity=0.252  Sum_probs=119.4

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      +.|+||+.++-.  |+||+.+|..||.|.+|.+..    +|+||+|.|..+|..||..||++.+         .+..+.|
T Consensus         1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l---------~~e~~vv   67 (216)
T KOG0106|consen    1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKEL---------CGERLVV   67 (216)
T ss_pred             CCceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCcee---------cceeeee
Confidence            357899888754  799999999999999998753    3699999999999999999999985         4555888


Q ss_pred             eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCC--CCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494           85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKL--EPESNVLLASIENMQYAVTLDVLHMVFSAFG  162 (340)
Q Consensus        85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG  162 (340)
                      ++++...-...    +...            .+     ..+|.....  .-...+++  |.|+...+++.+|.+.|+++|
T Consensus        68 e~~r~~~~~~g----~~~~------------g~-----r~~~~~~~~~p~~s~~r~~--~~~~~~r~~~qdl~d~~~~~g  124 (216)
T KOG0106|consen   68 EHARGKRRGRG----RPRG------------GD-----RRSDSRRYRPPSRTHFRLI--VRNLSLRVSWQDLKDHFRPAG  124 (216)
T ss_pred             ecccccccccC----CCCC------------CC-----ccchhhccCCcccccceee--eccchhhhhHHHHhhhhcccC
Confidence            88774311100    0000            00     000000000  01234555  789999999999999999999


Q ss_pred             CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          163 PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       163 ~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      .+..+.+   ..++ +||+|++.++|.+|++.|++..+.+.   .|.+.
T Consensus       125 ~~~~~~~---~~~~-~~v~Fs~~~da~ra~~~l~~~~~~~~---~l~~~  166 (216)
T KOG0106|consen  125 EVTYVDA---RRNF-AFVEFSEQEDAKRALEKLDGKKLNGR---RISVE  166 (216)
T ss_pred             CCchhhh---hccc-cceeehhhhhhhhcchhccchhhcCc---eeeec
Confidence            9965545   3344 99999999999999999999999987   88883

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.56  E-value=4.7e-14  Score=118.62  Aligned_cols=76  Identities=17%  Similarity=0.340  Sum_probs=67.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++.|+  |.||+.++|+++|+++|++||.|++|+|..+     ++|| |||+|++.++|++|++.||+..|.++   .|+
T Consensus        34 ~~~lf--VgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGf-aFV~F~~~e~A~~Al~~lng~~i~Gr---~l~  107 (144)
T PLN03134         34 STKLF--IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF-GFVNFNDEGAATAAISEMDGKELNGR---HIR  107 (144)
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence            45566  8899999999999999999999999998643     3576 99999999999999999999999998   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |++++.+
T Consensus       108 V~~a~~~  114 (144)
T PLN03134        108 VNPANDR  114 (144)
T ss_pred             EEeCCcC
Confidence            9998754

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=4.1e-14  Score=126.11  Aligned_cols=78  Identities=14%  Similarity=0.342  Sum_probs=70.9

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++.++|+|+.|...|+-|+|++.|.+||+|.+.+|++     |++|+ +||.|-.+++|+.||+.|||..|.++   .||
T Consensus        60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGY-gFVSf~~k~dAEnAI~~MnGqWlG~R---~IR  135 (321)
T KOG0148|consen   60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGY-GFVSFPNKEDAENAIQQMNGQWLGRR---TIR  135 (321)
T ss_pred             ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccce-eEEeccchHHHHHHHHHhCCeeeccc---eee
Confidence            4578899999999999999999999999999999875     45675 99999999999999999999999999   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      ..||..+
T Consensus       136 TNWATRK  142 (321)
T KOG0148|consen  136 TNWATRK  142 (321)
T ss_pred             ccccccC
Confidence            9999544

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=99.52  E-value=1.2e-13  Score=128.89  Aligned_cols=164  Identities=12%  Similarity=0.121  Sum_probs=119.8

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...+||+.+..  +||.|++.|++||+|.++++++    +.+.+|+||+|.+.+...+++..-.-          ++.++
T Consensus         6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h----------~~dgr   75 (311)
T KOG4205|consen    6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH----------KLDGR   75 (311)
T ss_pred             CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc----------ccCCc
Confidence            34567765553  3799999999999999999998    34667899999999999988863221          14577


Q ss_pred             eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494           81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA  160 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~  160 (340)
                      .|.+.-+..++...+..                                   ....++.++|+.|+..+++++|++.|++
T Consensus        76 ~ve~k~av~r~~~~~~~-----------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~  120 (311)
T KOG4205|consen   76 SVEPKRAVSREDQTKVG-----------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQ  120 (311)
T ss_pred             cccceeccCcccccccc-----------------------------------cccceeEEEecCcCCCCchHHHhhhhhc
Confidence            66666554332211100                                   0112344558899999999999999999


Q ss_pred             cCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCcc
Q 019494          161 FGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI  220 (340)
Q Consensus       161 fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~  220 (340)
                      ||.|..+.++.     +.+|| +||.|.++++..+++. ..-+.|.++   .+.|.-|-+++...
T Consensus       121 ~g~v~~~~~~~d~~~~~~rgF-gfv~~~~e~sVdkv~~-~~f~~~~gk---~vevkrA~pk~~~~  180 (311)
T KOG4205|consen  121 FGKVADVVIMYDKTTSRPRGF-GFVTFDSEDSVDKVTL-QKFHDFNGK---KVEVKRAIPKEVMQ  180 (311)
T ss_pred             cceeEeeEEeecccccccccc-eeeEeccccccceecc-cceeeecCc---eeeEeeccchhhcc
Confidence            99998887653     33677 9999999999988875 477788888   78888777766543

>PF00076 RRM_1: RNA recognition motif

Probab=99.46  E-value=1.8e-13  Score=99.69  Aligned_cols=66  Identities=27%  Similarity=0.411  Sum_probs=59.2

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      |+|+|||.++|+++|+++|+.||.|..+++..+    .++ +|||+|++.++|.+|++.|||..+.++   .||
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~a~V~F~~~~~a~~a~~~l~g~~~~~~---~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKG-YAFVEFESEEDAEKALEELNGKKINGR---KIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEE-EEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccc-eEEEEEcCHHHHHHHHHHcCCCEECcc---CcC
Confidence            569999999999999999999999999998774    234 599999999999999999999999987   664

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.45  E-value=3.1e-13  Score=113.64  Aligned_cols=75  Identities=16%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||.+++.+  |++|+++|++||+|.+|.+.+    ..+++||||+|.+.|+|++|++.||+..|         .++
T Consensus        34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---------~Gr  104 (144)
T PLN03134         34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---------NGR  104 (144)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence            457899999854  999999999999999998875    23577899999999999999999999984         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++++.+
T Consensus       105 ~l~V~~a~~~  114 (144)
T PLN03134        105 HIRVNPANDR  114 (144)
T ss_pred             EEEEEeCCcC
Confidence            9999998754

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.43  E-value=1.9e-12  Score=128.69  Aligned_cols=184  Identities=21%  Similarity=0.270  Sum_probs=124.1

Q ss_pred             cCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeecc
Q 019494           11 YLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA   88 (340)
Q Consensus        11 ~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~   88 (340)
                      .+.|++..  +++|...|.+||+|.+|.+.+  .|..|.|+|.+..+|.+|...|....+         ...++++.++.
T Consensus       389 l~kNlpa~t~~~elt~~F~~fG~i~rvllp~--~G~~aiv~fl~p~eAr~Afrklaysr~---------k~~plyle~aP  457 (725)
T KOG0110|consen  389 LVKNLPAGTLSEELTEAFLRFGEIGRVLLPP--GGTGAIVEFLNPLEARKAFRKLAYSRF---------KSAPLYLEWAP  457 (725)
T ss_pred             eeccCccccccHHHHHHhhcccccceeecCc--ccceeeeeecCccchHHHHHHhchhhh---------ccCccccccCh
Confidence            44566643  689999999999999996553  444599999999999999999998774         57788888776


Q ss_pred             CCcccccccCcCCcCCCCCCCCC-CC------CccCcC---C-CccccC--C-CCCCCCCCcEEEEEeecCCCCCCHHHH
Q 019494           89 HTDLSVKFQSHRSRDYTNPYLPV-AP------SAIDAS---G-QLSVGL--D-GKKLEPESNVLLASIENMQYAVTLDVL  154 (340)
Q Consensus        89 ~~~l~~~~~~~~~~~~~~~~~~~-~~------~~~~~~---~-~~~~~~--~-~~~~~~~s~vl~v~v~nl~~~vt~~~L  154 (340)
                      ...+.-.   .++.++.+-.... ..      ++.++.   . .++-+.  . ........++|+  |.||....|.++|
T Consensus       458 ~dvf~~~---pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lf--vkNlnf~Tt~e~l  532 (725)
T KOG0110|consen  458 EDVFTED---PKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLF--VKNLNFDTTLEDL  532 (725)
T ss_pred             hhhccCC---ccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhh--hhcCCcccchhHH
Confidence            4432210   0000000000000 00      000000   0 000000  0 000001112255  8899999999999


Q ss_pred             HHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          155 HMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       155 ~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      ..+|+..|.|..+.|-.++        .|| |||+|.+.++|+.|++.|+|+.|.|.   .|.|.++.
T Consensus       533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGf-gFVEF~~~e~A~~a~k~lqgtvldGH---~l~lk~S~  596 (725)
T KOG0110|consen  533 EDLFSKQGTVLSIEISKKKDPANKYLSMGF-GFVEFAKPESAQAALKALQGTVLDGH---KLELKISE  596 (725)
T ss_pred             HHHHHhcCeEEEEEEeccccccccccccce-eEEEecCHHHHHHHHHHhcCceecCc---eEEEEecc
Confidence            9999999999999886433        276 99999999999999999999999999   99999998

>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]

Probab=99.42  E-value=4.6e-13  Score=112.48  Aligned_cols=74  Identities=22%  Similarity=0.362  Sum_probs=68.9

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      |||+||+..+++.||+.+|+.||.|..|.|-....|| |||||+|..+|..|+..|+|..|.|.   .|+|++++-..
T Consensus        13 VYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGf-AFVEFed~RDA~DAvr~LDG~~~cG~---r~rVE~S~G~~   86 (195)
T KOG0107|consen   13 VYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGF-AFVEFEDPRDAEDAVRYLDGKDICGS---RIRVELSTGRP   86 (195)
T ss_pred             EEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCc-eEEeccCcccHHHHHhhcCCccccCc---eEEEEeecCCc
Confidence            7899999999999999999999999999988777787 99999999999999999999999998   99999986543

>PF13893 RRM_5: RNA recognition motif

Probab=99.41  E-value=9.4e-13  Score=92.46  Aligned_cols=56  Identities=38%  Similarity=0.611  Sum_probs=51.3

Q ss_pred             HHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          154 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       154 L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+++|++||+|++|++.+++++ +|||+|.+.++|.+|++.|||..+.|+   +|+|+||
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~-~a~V~f~~~~~A~~a~~~l~~~~~~g~---~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRG-FAFVEFASVEDAQKAIEQLNGRQFNGR---PLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTT-EEEEEESSHHHHHHHHHHHTTSEETTE---EEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence            7899999999999999987745 599999999999999999999999998   9999996

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=99.41  E-value=5.9e-12  Score=116.45  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=63.8

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...|+|+.....|  |+||+.+|+.||+|.+|.+.+    +..++|+||||.+..+-..||..||=..         ++|
T Consensus       209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFD---------LGG  279 (544)
T KOG0124|consen  209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD---------LGG  279 (544)
T ss_pred             hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhh---------ccc
Confidence            3468999887766  899999999999999999987    4567899999999999999999999655         689


Q ss_pred             ceEEEeecc
Q 019494           80 CTLRITYSA   88 (340)
Q Consensus        80 ~~l~v~~s~   88 (340)
                      .-|||..+-
T Consensus       280 QyLRVGk~v  288 (544)
T KOG0124|consen  280 QYLRVGKCV  288 (544)
T ss_pred             ceEeccccc
Confidence            999988654

>PF13893 RRM_5: RNA recognition motif

Probab=99.39  E-value=1e-12  Score=92.25  Aligned_cols=56  Identities=36%  Similarity=0.542  Sum_probs=50.0

Q ss_pred             HHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494           22 RAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS   87 (340)
Q Consensus        22 L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s   87 (340)
                      |+++|++||+|.+|.+.++. +++|||+|.+.++|++|++.|||..+         .|++|+|+||
T Consensus         1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~---------~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQF---------NGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEE---------TTEEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEC
Confidence            78999999999999998754 46899999999999999999999985         6999999986

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.39  E-value=1.4e-12  Score=124.71  Aligned_cols=78  Identities=19%  Similarity=0.362  Sum_probs=69.1

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ...++|+  |.||++++|+++|+++|+.||+|++|+|..+     ++|+ |||+|.+.++|.+|++.|||..|.++   .
T Consensus       105 ~~~~~Lf--VgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGy-aFVeF~~~e~A~~Ai~~LnG~~l~gr---~  178 (346)
T TIGR01659       105 NSGTNLI--VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGY-AFVDFGSEADSQRAIKNLNGITVRNK---R  178 (346)
T ss_pred             CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcE-EEEEEccHHHHHHHHHHcCCCccCCc---e
Confidence            3456666  8999999999999999999999999998653     2465 99999999999999999999999999   9


Q ss_pred             EEEEeecCC
Q 019494          208 LHISYSRHT  216 (340)
Q Consensus       208 l~v~~ak~~  216 (340)
                      |+|+|+++.
T Consensus       179 i~V~~a~p~  187 (346)
T TIGR01659       179 LKVSYARPG  187 (346)
T ss_pred             eeeeccccc
Confidence            999998753

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.38  E-value=7.7e-13  Score=101.89  Aligned_cols=79  Identities=23%  Similarity=0.404  Sum_probs=70.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +++|+  |.|||..+|.|+..+||.+||.|..|+|-..+  +|. |||.|+|..+|.+|+++|+|+.+.++   .|.|-|
T Consensus        18 nriLy--irNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGT-AFVVYedi~dAk~A~dhlsg~n~~~r---yl~vly   91 (124)
T KOG0114|consen   18 NRILY--IRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGT-AFVVYEDIFDAKKACDHLSGYNVDNR---YLVVLY   91 (124)
T ss_pred             heeEE--EecCCccccHHHHHHHhhcccceEEEEecCccCcCce-EEEEehHhhhHHHHHHHhcccccCCc---eEEEEe
Confidence            56666  99999999999999999999999999986433  575 99999999999999999999999999   999999


Q ss_pred             ecCCCCc
Q 019494          213 SRHTDLS  219 (340)
Q Consensus       213 ak~~~~~  219 (340)
                      -.+.+..
T Consensus        92 yq~~~~~   98 (124)
T KOG0114|consen   92 YQPEDAF   98 (124)
T ss_pred             cCHHHHH
Confidence            8766543

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.3e-12  Score=115.13  Aligned_cols=77  Identities=19%  Similarity=0.375  Sum_probs=69.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      .+.++.  |.||++++++++|++||.+||.|.+|.+.+.+     +|| |||.|.++++|++|++.|||+-.++=   .|
T Consensus       188 D~~tvR--vtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGF-AFVtF~sRddA~rAI~~LnG~gyd~L---IL  261 (270)
T KOG0122|consen  188 DEATVR--VTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGF-AFVTFESRDDAARAIADLNGYGYDNL---IL  261 (270)
T ss_pred             ccceeE--EecCccccChhHHHHHhhccCccceeEEEEccccCcccce-EEEEEecHHHHHHHHHHccCcccceE---EE
Confidence            456677  78999999999999999999999999986543     677 99999999999999999999988887   99


Q ss_pred             EEEeecCC
Q 019494          209 HISYSRHT  216 (340)
Q Consensus       209 ~v~~ak~~  216 (340)
                      +|+|||++
T Consensus       262 rvEwskP~  269 (270)
T KOG0122|consen  262 RVEWSKPS  269 (270)
T ss_pred             EEEecCCC
Confidence            99999985

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=99.33  E-value=1.2e-10  Score=116.75  Aligned_cols=77  Identities=25%  Similarity=0.305  Sum_probs=69.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |++||  |+.++.++++.+|.++|+.||+|++|.+....+  ||||.+..+.+|.+|+.+|+++.+.++   .|+|.|+.
T Consensus       421 SrTLw--vG~i~k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa~  493 (894)
T KOG0132|consen  421 SRTLW--VGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWAV  493 (894)
T ss_pred             eeeee--eccccchhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccce---eeEEeeec
Confidence            67888  899999999999999999999999998776554  799999999999999999999999999   99999996


Q ss_pred             CCCC
Q 019494          215 HTDL  218 (340)
Q Consensus       215 ~~~~  218 (340)
                      ..-.
T Consensus       494 g~G~  497 (894)
T KOG0132|consen  494 GKGP  497 (894)
T ss_pred             cCCc
Confidence            5543

>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]

Probab=99.32  E-value=3.3e-12  Score=107.40  Aligned_cols=74  Identities=26%  Similarity=0.351  Sum_probs=66.0

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      .+++|++|+...  +.||+.+|..||.|.+|.+.+...+ ||||||+|..+|+.|+.+|||+.|         .|..|+|
T Consensus        10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPG-fAFVEFed~RDA~DAvr~LDG~~~---------cG~r~rV   79 (195)
T KOG0107|consen   10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPG-FAFVEFEDPRDAEDAVRYLDGKDI---------CGSRIRV   79 (195)
T ss_pred             CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCC-ceEEeccCcccHHHHHhhcCCccc---------cCceEEE
Confidence            468899999965  8999999999999999998875444 699999999999999999999995         6999999


Q ss_pred             eeccCC
Q 019494           85 TYSAHT   90 (340)
Q Consensus        85 ~~s~~~   90 (340)
                      ++|+-.
T Consensus        80 E~S~G~   85 (195)
T KOG0107|consen   80 ELSTGR   85 (195)
T ss_pred             EeecCC
Confidence            998844

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.30  E-value=8.5e-12  Score=91.36  Aligned_cols=66  Identities=32%  Similarity=0.465  Sum_probs=57.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      |+|.|||.++|+++|+++|+.||.|.+|++...+    ++ +|||+|.+.++|.+|++.++|..+.|+   .|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~-~a~v~f~~~~~a~~al~~~~~~~~~g~---~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRG-FAFVEFSSEEDAKRALELLNGKEIDGR---KLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEE-EEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCC-EEEEEeCCHHHHHHHHHHCCCcEECCE---EcC
Confidence            4589999999999999999999999999988764    35 499999999999999999999999987   654

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.30  E-value=1.1e-11  Score=112.03  Aligned_cols=72  Identities=24%  Similarity=0.301  Sum_probs=64.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      |+|+||++.+|+++|+++|+.||+|++|.|...+  +|| |||+|++.++|..|+. |||..|.++   .|+|+.+..-
T Consensus         7 VfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~Gf-AFVtF~d~eaAe~All-LnG~~l~gr---~V~Vt~a~~~   80 (260)
T PLN03120          7 VKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQI-AYVTFKDPQGAETALL-LSGATIVDQ---SVTITPAEDY   80 (260)
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-EEEEeCcHHHHHHHHH-hcCCeeCCc---eEEEEeccCC
Confidence            4499999999999999999999999999987643  566 9999999999999995 999999999   9999986543

>PF00076 RRM_1: RNA recognition motif

Probab=99.29  E-value=5e-12  Score=92.01  Aligned_cols=65  Identities=26%  Similarity=0.366  Sum_probs=55.4

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      |||++++.+  +++|+++|++||.|..+.+..+   ..+++|||+|.+.++|++|++.|||..+         .+++|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---------~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI---------NGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE---------CccCcC
Confidence            577777754  8999999999999999988773   4566899999999999999999999884         687775

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=99.28  E-value=7.5e-12  Score=100.04  Aligned_cols=72  Identities=21%  Similarity=0.335  Sum_probs=64.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      |++++  |+||...+|||+|++||+++|+|.+|.|--++     -|| |||+|.++++|..|+..++|+.++.+   .|+
T Consensus        36 S~tvy--VgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGF-CFVeyy~~~dA~~AlryisgtrLddr---~ir  109 (153)
T KOG0121|consen   36 SCTVY--VGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGF-CFVEYYSRDDAEDALRYISGTRLDDR---PIR  109 (153)
T ss_pred             cceEE--EeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccce-EEEEEecchhHHHHHHHhccCccccc---cee
Confidence            66655  99999999999999999999999999874321     366 99999999999999999999999999   999


Q ss_pred             EEe
Q 019494          210 ISY  212 (340)
Q Consensus       210 v~~  212 (340)
                      |+|
T Consensus       110 ~D~  112 (153)
T KOG0121|consen  110 IDW  112 (153)
T ss_pred             eec
Confidence            997

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=99.25  E-value=2e-10  Score=105.86  Aligned_cols=185  Identities=17%  Similarity=0.244  Sum_probs=121.1

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCcee--------EEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCC
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVH--------KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLL   73 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~--------~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~   73 (340)
                      +..+||+++|.|  -+++.++|+.+|.|.        +|.+.+   +.-++-|++.|-..|+..-|++.|++..      
T Consensus       134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~------  207 (382)
T KOG1548|consen  134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE------  207 (382)
T ss_pred             CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc------
Confidence            456899999976  788999999999984        356655   3345569999999999999999999988      


Q ss_pred             CCCCCCceEEEeeccCC---cccccccCc-CCcCCCCCCCCCCCCccCcCCCccccCCCCC-----CCCCCcEEEEEeec
Q 019494           74 PENMGPCTLRITYSAHT---DLSVKFQSH-RSRDYTNPYLPVAPSAIDASGQLSVGLDGKK-----LEPESNVLLASIEN  144 (340)
Q Consensus        74 ~~~~~~~~l~v~~s~~~---~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~vl~v~v~n  144 (340)
                         ++|++|+|+.++-.   +........ +..+...  +.+..       +...+|....     ......|+   +.|
T Consensus       208 ---~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk--~~k~q-------~k~~dw~pd~~~~sk~r~~~tVi---~kn  272 (382)
T KOG1548|consen  208 ---LRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKK--LKKQQ-------QKLLDWRPDRDDPSKARADRTVI---LKN  272 (382)
T ss_pred             ---ccCcEEEEehhhhhhccCcCcccccccccccHHH--HHHHH-------HhhcccCCCccccccccCCcEEE---eee
Confidence               47999999987632   111100000 0000000  00000       0000111100     01112333   455


Q ss_pred             CCC----CCC-------HHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          145 MQY----AVT-------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       145 l~~----~vt-------~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +-.    .-+       .++|++-+++||.|.+|+++.+. .|. +-|.|.+.++|..|++.|+|..+.|+   .|..+.
T Consensus       273 ~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGv-vtV~f~n~eeA~~ciq~m~GR~fdgR---ql~A~i  348 (382)
T KOG1548|consen  273 MFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGV-VTVSFRNNEEADQCIQTMDGRWFDGR---QLTASI  348 (382)
T ss_pred             cCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCce-eEEEeCChHHHHHHHHHhcCeeecce---EEEEEE
Confidence            421    223       45567779999999999998544 465 99999999999999999999999999   888776


Q ss_pred             ecCC
Q 019494          213 SRHT  216 (340)
Q Consensus       213 ak~~  216 (340)
                      ..-+
T Consensus       349 ~DG~  352 (382)
T KOG1548|consen  349 WDGK  352 (382)
T ss_pred             eCCc
Confidence            5433

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=99.25  E-value=3.4e-11  Score=117.99  Aligned_cols=178  Identities=15%  Similarity=0.229  Sum_probs=121.7

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ++|+++++..  ++.++++.+.||.+....+++    +.+++|||.||.|......|+..|||+.         +++++|
T Consensus       291 ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~---------lgd~~l  361 (500)
T KOG0120|consen  291 KIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ---------LGDKKL  361 (500)
T ss_pred             hhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh---------hcCcee
Confidence            4577766643  789999999999998887776    3678899999999999999999999998         468999


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCC--CCC-C-------HH
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQ--YAV-T-------LD  152 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~--~~v-t-------~~  152 (340)
                      -|+.+-........+..           .+++.+.+--......    ...++.||.  ..|+-  .+. +       .|
T Consensus       362 vvq~A~~g~~~~~~~~~-----------~~~~~~~~i~~~~~q~----~g~~t~Vl~--L~n~Vt~deLkdd~EyeeIlE  424 (500)
T KOG0120|consen  362 VVQRAIVGASNANVNFN-----------ISQSQVPGIPLLMTQM----AGIPTEVLC--LTNVVTPDELKDDEEYEEILE  424 (500)
T ss_pred             EeehhhccchhccccCC-----------ccccccccchhhhccc----CCCcchhhh--hhhcCCHHHhcchHHHHHHHH
Confidence            99987644322211100           0000000000000000    113466666  34541  111 1       12


Q ss_pred             HHHHHHcccCCeeEEEEEcC-C-------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          153 VLHMVFSAFGPVQKIAMFDK-N-------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       153 ~L~~~F~~fG~v~~v~i~~~-~-------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      +++.-|++||.|..|+|.+. .       -| ..||+|.|.+++++|.++|+|.++.++   +|.++|-...
T Consensus       425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~G-kVFVefas~ed~qrA~~~L~GrKF~nR---tVvtsYydeD  492 (500)
T KOG0120|consen  425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTG-KVFVEFADTEDSQRAMEELTGRKFANR---TVVASYYDED  492 (500)
T ss_pred             HHHHHhcccCceeEEecCCCCCCCCcCCCcc-cEEEEecChHHHHHHHHHccCceeCCc---EEEEEecCHH
Confidence            35556899999999998754 1       13 589999999999999999999999999   9999986543

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=99.24  E-value=1.4e-10  Score=111.32  Aligned_cols=156  Identities=17%  Similarity=0.248  Sum_probs=104.9

Q ss_pred             CCCCCCCHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccC
Q 019494           12 LQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH   89 (340)
Q Consensus        12 l~~~~~~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~   89 (340)
                      |+|.+|+ +||+++|+.++ |.++++.+.  +..+-|||||.++|++++|++. +-..         ++.+=|.|--+..
T Consensus        18 LPwsat~-~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~---------mg~RYIEVf~~~~   85 (510)
T KOG4211|consen   18 LPWSATE-KEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRES---------MGHRYIEVFTAGG   85 (510)
T ss_pred             CCccccH-HHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHH---------hCCceEEEEccCC
Confidence            7999995 99999999995 577766652  2333499999999999999973 3333         4566677766554


Q ss_pred             CcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-
Q 019494           90 TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-  168 (340)
Q Consensus        90 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-  168 (340)
                      .+...-  ..+                          .+........|+.  +..||+.||++||.++|+--=.|.... 
T Consensus        86 ~e~d~~--~~~--------------------------~g~~s~~~d~vVR--LRGLPfscte~dI~~FFaGL~Iv~~gi~  135 (510)
T KOG4211|consen   86 AEADWV--MRP--------------------------GGPNSSANDGVVR--LRGLPFSCTEEDIVEFFAGLEIVPDGIL  135 (510)
T ss_pred             cccccc--ccC--------------------------CCCCCCCCCceEE--ecCCCccCcHHHHHHHhcCCccccccee
Confidence            432110  000                          0000001234555  789999999999999999876665522 


Q ss_pred             EEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          169 MFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       169 i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      ++..    ..| .|||+|++.+.|++|+.. |...|..+   -|.|--|.
T Consensus       136 l~~d~rgR~tG-EAfVqF~sqe~ae~Al~r-hre~iGhR---YIEvF~Ss  180 (510)
T KOG4211|consen  136 LPMDQRGRPTG-EAFVQFESQESAEIALGR-HRENIGHR---YIEVFRSS  180 (510)
T ss_pred             eeccCCCCccc-ceEEEecCHHHHHHHHHH-HHHhhccc---eEEeehhH
Confidence            2221    234 599999999999999976 66667776   67666543

>PLN03213 repressor of silencing 3; Provisional

Probab=99.23  E-value=3.7e-11  Score=115.04  Aligned_cols=76  Identities=16%  Similarity=0.264  Sum_probs=68.8

Q ss_pred             EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCCh--HHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDV--QTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~--~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ...|||+||.+.||+++|+.+|+.||.|.+|.|++.+ +|| |||+|.+.  .++.+|+..|||..+.|+   .|+|.-|
T Consensus        10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGF-AFVEMssdddaEeeKAISaLNGAEWKGR---~LKVNKA   85 (759)
T PLN03213         10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSF-AYIDFSPSSTNSLTKLFSTYNGCVWKGG---RLRLEKA   85 (759)
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCce-EEEEecCCcHHHHHHHHHHhcCCeecCc---eeEEeec
Confidence            3557799999999999999999999999999988643 677 99999976  789999999999999999   9999999


Q ss_pred             cCC
Q 019494          214 RHT  216 (340)
Q Consensus       214 k~~  216 (340)
                      |+.
T Consensus        86 KP~   88 (759)
T PLN03213         86 KEH   88 (759)
T ss_pred             cHH
Confidence            866

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=99.22  E-value=1.3e-11  Score=106.30  Aligned_cols=74  Identities=23%  Similarity=0.436  Sum_probs=67.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |.|.||.+.+|.|+|+.+|++||.|-.|.|..+     .+|| |||.|.+..+|+.|+++|+|..|+|+   .|+|.+++
T Consensus        16 LkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgF-aFVrf~~k~daedA~damDG~~ldgR---elrVq~ar   91 (256)
T KOG4207|consen   16 LKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGF-AFVRFHDKRDAEDALDAMDGAVLDGR---ELRVQMAR   91 (256)
T ss_pred             EEecceeccCCHHHHHHHHHHhCcccceecccccccccccce-eEEEeeecchHHHHHHhhcceeeccc---eeeehhhh
Confidence            448999999999999999999999999999754     3687 99999999999999999999999999   99999987


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      -..
T Consensus        92 ygr   94 (256)
T KOG4207|consen   92 YGR   94 (256)
T ss_pred             cCC
Confidence            543

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=7.7e-12  Score=108.61  Aligned_cols=79  Identities=18%  Similarity=0.420  Sum_probs=71.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .++|.  |++|.++||+..|+..|-.||.|..|.|+-     +.||| |||+|+..|+|.+|+..||+.+|+|+   +|+
T Consensus        10 KrtlY--VGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgF-gFVefe~aEDAaaAiDNMnesEL~Gr---tir   83 (298)
T KOG0111|consen   10 KRTLY--VGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGF-GFVEFEEAEDAAAAIDNMNESELFGR---TIR   83 (298)
T ss_pred             ceeEE--eccchHHHHHHHHHhccccccchhhcccccchhcccccce-eEEEeeccchhHHHhhcCchhhhcce---eEE
Confidence            44544  999999999999999999999999999863     55787 99999999999999999999999999   999


Q ss_pred             EEeecCCCCc
Q 019494          210 ISYSRHTDLS  219 (340)
Q Consensus       210 v~~ak~~~~~  219 (340)
                      |.|+++...+
T Consensus        84 VN~AkP~kik   93 (298)
T KOG0111|consen   84 VNLAKPEKIK   93 (298)
T ss_pred             EeecCCcccc
Confidence            9999987644

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=99.22  E-value=1.5e-11  Score=112.60  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      .|||++||+-.  |-||+..|++||+|.+|.|+-  +.+|+|+||+|.+.+||++|.++|||..|         .||+|.
T Consensus        97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V---------EGRkIE  167 (376)
T KOG0125|consen   97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVV---------EGRKIE  167 (376)
T ss_pred             ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhccee---------eceEEE
Confidence            48999999954  699999999999999886543  66788999999999999999999999985         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |.-+..+
T Consensus       168 Vn~ATar  174 (376)
T KOG0125|consen  168 VNNATAR  174 (376)
T ss_pred             Eeccchh
Confidence            9988755

>smart00362 RRM_2 RNA recognition motif

Probab=99.21  E-value=8.2e-11  Score=84.84  Aligned_cols=67  Identities=27%  Similarity=0.409  Sum_probs=60.0

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      |+|.|++..+++++|+++|+.||.|.++.+....   .| +|||+|.+.++|.+|++.++|..+.++   .|+|
T Consensus         2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~~~~~~~~~~---~i~v   71 (72)
T smart00362        2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKG-FAFVEFESEEDAEKAIEALNGTKLGGR---PLRV   71 (72)
T ss_pred             EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCc-eEEEEeCCHHHHHHHHHHhCCcEECCE---EEee
Confidence            4589999999999999999999999999987654   45 499999999999999999999999887   7765

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=99.19  E-value=6.2e-11  Score=108.53  Aligned_cols=75  Identities=16%  Similarity=0.306  Sum_probs=66.8

Q ss_pred             EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE---cCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          138 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF---DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       138 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~---~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      ..|+|.|+|...-|.||+.+|++||+|..|.|+   +.++|| |||.|++.++|.+|.++|||+.|.|+   +|+|.-+.
T Consensus        97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGF-GFVTmen~~dadRARa~LHgt~VEGR---kIEVn~AT  172 (376)
T KOG0125|consen   97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGF-GFVTMENPADADRARAELHGTVVEGR---KIEVNNAT  172 (376)
T ss_pred             ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCcc-ceEEecChhhHHHHHHHhhcceeece---EEEEeccc
Confidence            334489999999999999999999999999964   344687 99999999999999999999999999   99999886


Q ss_pred             CC
Q 019494          215 HT  216 (340)
Q Consensus       215 ~~  216 (340)
                      .+
T Consensus       173 ar  174 (376)
T KOG0125|consen  173 AR  174 (376)
T ss_pred             hh
Confidence            55

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.17  E-value=1.4e-10  Score=103.54  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=63.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +.+++  |.||++.+|+++|+++|+.||+|.+|+|.++.  +++ |||+|++.++|..|+ .|||..|.++   .|.|.-
T Consensus         5 g~TV~--V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gf-AfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~   77 (243)
T PLN03121          5 GYTAE--VTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACT-AYVTFKDAYALETAV-LLSGATIVDQ---RVCITR   77 (243)
T ss_pred             ceEEE--EecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceE-EEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEe
Confidence            44555  89999999999999999999999999998654  344 999999999999999 6999999999   888885


Q ss_pred             ec
Q 019494          213 SR  214 (340)
Q Consensus       213 ak  214 (340)
                      ..
T Consensus        78 ~~   79 (243)
T PLN03121         78 WG   79 (243)
T ss_pred             Cc
Confidence            44

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=99.16  E-value=4e-11  Score=95.92  Aligned_cols=76  Identities=18%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             ccccccccCCCCC--CCHHHHHHhhcccCceeEEEEe----eecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            4 IWPLSRKYLQWQL--SASGERAHVFSAFGFVHKITTF----EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         4 ~~~~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~----~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ++.++-+|++|+.  ++||.|++||+++|+|.+|++=    ++..=+||||+|.+.++|..|+++++|..         +
T Consensus        33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr---------L  103 (153)
T KOG0121|consen   33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR---------L  103 (153)
T ss_pred             HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc---------c
Confidence            4567789999998  5699999999999999999762    23444579999999999999999999998         4


Q ss_pred             CCceEEEeecc
Q 019494           78 GPCTLRITYSA   88 (340)
Q Consensus        78 ~~~~l~v~~s~   88 (340)
                      ..++|+|.|-.
T Consensus       104 ddr~ir~D~D~  114 (153)
T KOG0121|consen  104 DDRPIRIDWDA  114 (153)
T ss_pred             cccceeeeccc
Confidence            69999998743

>smart00360 RRM RNA recognition motif

Probab=99.15  E-value=1.6e-10  Score=82.87  Aligned_cols=65  Identities=26%  Similarity=0.456  Sum_probs=57.8

Q ss_pred             eecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       142 v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      |.||+..+++++|+++|+.||.|.++.+...+     +|+ |||+|.+.++|.+|++.|++..+.++   .|+|
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~-a~v~f~~~~~a~~a~~~~~~~~~~~~---~~~v   70 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGF-AFVEFESEEDAEKALEALNGKELDGR---PLKV   70 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCce-EEEEeCCHHHHHHHHHHcCCCeeCCc---EEEe
Confidence            46899999999999999999999999987643     354 99999999999999999999999888   7776

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=99.14  E-value=1.3e-10  Score=101.75  Aligned_cols=82  Identities=29%  Similarity=0.494  Sum_probs=72.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHH----HHcccCCeeEEEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHM----VFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~----~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ++.+|.  |.||.+.+..++|+.    ||++||+|..|+.++  +-+| +|||.|.+.+.|..|+.+|+|..++|+   .
T Consensus         8 pn~TlY--InnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRG-QA~VvFk~~~~As~A~r~l~gfpFygK---~   81 (221)
T KOG4206|consen    8 PNGTLY--INNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRG-QAFVVFKETEAASAALRALQGFPFYGK---P   81 (221)
T ss_pred             CCceEe--ehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccC-ceEEEecChhHHHHHHHHhcCCcccCc---h
Confidence            455655  999999999999888    999999999999874  4467 599999999999999999999999999   9


Q ss_pred             EEEEeecCCCCccc
Q 019494          208 LHISYSRHTDLSIK  221 (340)
Q Consensus       208 l~v~~ak~~~~~~~  221 (340)
                      |+|.||+.+...+.
T Consensus        82 mriqyA~s~sdii~   95 (221)
T KOG4206|consen   82 MRIQYAKSDSDIIA   95 (221)
T ss_pred             hheecccCccchhh
Confidence            99999998876554

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.13  E-value=4e-10  Score=81.60  Aligned_cols=69  Identities=28%  Similarity=0.445  Sum_probs=61.8

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      |+|.||+..+++++|+++|+.||.|.++.+....    .|+ |||+|.+.++|..|++.+++..+.++   .|+|.|
T Consensus         2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~-~~v~f~s~~~a~~a~~~~~~~~~~~~---~~~v~~   74 (74)
T cd00590           2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGF-AFVEFEDEEDAEKALEALNGKELGGR---PLRVEF   74 (74)
T ss_pred             EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEeC
Confidence            4589999999999999999999999999987643    454 99999999999999999999999888   888764

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.13  E-value=1.4e-10  Score=84.92  Aligned_cols=65  Identities=29%  Similarity=0.390  Sum_probs=54.4

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEEEEeeec---CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~---~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      |||++++.+  ++||+++|+.||.|.+|.+.+.+   .+++|||+|.+.++|.+|++.+++..+         .|+.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~---------~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI---------DGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE---------CCEEcC
Confidence            467777744  89999999999999999988742   356799999999999999999998874         687764

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.13  E-value=1.5e-10  Score=104.88  Aligned_cols=73  Identities=19%  Similarity=0.147  Sum_probs=62.6

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ...+|++|++.  +|+||+++|+.||+|.+|.+.+. ..+++|||+|.+.++|+.|+. |||..|         .|+.|+
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l---------~gr~V~   73 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATI---------VDQSVT   73 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCee---------CCceEE
Confidence            35689988884  48999999999999999998763 345689999999999999995 999984         699999


Q ss_pred             EeeccC
Q 019494           84 ITYSAH   89 (340)
Q Consensus        84 v~~s~~   89 (340)
                      |..+..
T Consensus        74 Vt~a~~   79 (260)
T PLN03120         74 ITPAED   79 (260)
T ss_pred             EEeccC
Confidence            998764

>PLN03213 repressor of silencing 3; Provisional

Probab=99.09  E-value=2e-10  Score=110.05  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCH--HHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDT--ETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~--e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ..||||+++.-  +++||+.+|+.||.|.+|.|++.+.++||||+|.+.  +++.+||..|||..         +.|+.|
T Consensus        10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE---------WKGR~L   80 (759)
T PLN03213         10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV---------WKGGRL   80 (759)
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe---------ecCcee
Confidence            46899999884  489999999999999999998866678999999987  78999999999998         579999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|+.++..
T Consensus        81 KVNKAKP~   88 (759)
T PLN03213         81 RLEKAKEH   88 (759)
T ss_pred             EEeeccHH
Confidence            99998855

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=99.09  E-value=3e-09  Score=100.82  Aligned_cols=189  Identities=18%  Similarity=0.230  Sum_probs=121.3

Q ss_pred             ccCCCCCCC--HHHHHHhhccc-CceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494           10 KYLQWQLSA--SGERAHVFSAF-GFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~f-G~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +||.|++-|  =.||++||.+- |+|.-|.++-   .+.+++|.|||+++|.+++|++.||-.+         +.|++|.
T Consensus        47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~---------~~GR~l~  117 (608)
T KOG4212|consen   47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE---------VNGRELV  117 (608)
T ss_pred             EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc---------ccCceEE
Confidence            788888865  47899999765 9999986654   4566789999999999999999999887         5799999


Q ss_pred             EeeccCCc------cccc----c--c--CcCCcCCCC-----------CCCCCCCCccC-cCCCccc-------------
Q 019494           84 ITYSAHTD------LSVK----F--Q--SHRSRDYTN-----------PYLPVAPSAID-ASGQLSV-------------  124 (340)
Q Consensus        84 v~~s~~~~------l~~~----~--~--~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~-------------  124 (340)
                      |..-...+      +...    +  .  ..-.++..+           ........... ..+..+.             
T Consensus       118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf  197 (608)
T KOG4212|consen  118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF  197 (608)
T ss_pred             EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence            87543210      0000    0  0  000000000           00000000000 0000000             


Q ss_pred             c----CC--CCCCCCC-CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc----CCCCeEEEEEcCChHHHHHHHH
Q 019494          125 G----LD--GKKLEPE-SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKE  193 (340)
Q Consensus       125 ~----~~--~~~~~~~-s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~----~~~g~~afV~F~~~~~A~~A~~  193 (340)
                      +    +.  -....+| ...+|  |.||.+.|..+.|++.|.-.|+|+.|-+--    +++|+ +.|+|++.-+|.+|+.
T Consensus       198 gl~~~Flr~~h~f~pPl~~k~f--vanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~-~vi~y~hpveavqaIs  274 (608)
T KOG4212|consen  198 GLSASFLRSLHIFSPPLHNKVF--VANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGF-AVIEYDHPVEAVQAIS  274 (608)
T ss_pred             cchhhhhhhccCCCCCccceee--eeccccccchHHHHHHhccceeeeeeceeeccccccCCe-eEEEecchHHHHHHHH
Confidence            0    00  0011222 44445  899999999999999999999999887522    34676 9999999999999999


Q ss_pred             HhcCCeeCCCCccEEEEEee
Q 019494          194 ALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       194 ~lng~~i~~~~~~~l~v~~a  213 (340)
                      .|++.-+++.   ++.+.+.
T Consensus       275 ml~~~g~~~~---~~~~Rl~  291 (608)
T KOG4212|consen  275 MLDRQGLFDR---RMTVRLD  291 (608)
T ss_pred             hhccCCCccc---cceeecc
Confidence            9998777776   6666653

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.08  E-value=1.1e-09  Score=99.15  Aligned_cols=140  Identities=16%  Similarity=0.229  Sum_probs=95.6

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..++||++++.+  |++|+++|..||.|..|.+..    +..+++|||+|.+.++|..|++.++|..+         .|+
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---------~~~  185 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---------EGR  185 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---------CCc
Confidence            378999999865  899999999999998887755    35677899999999999999999999884         699


Q ss_pred             eEEEeeccC-CcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494           81 TLRITYSAH-TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS  159 (340)
Q Consensus        81 ~l~v~~s~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~  159 (340)
                      +|+|.++.. ..............+. ...               ..........+..+.  +.+++..++.+++..+|.
T Consensus       186 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  247 (306)
T COG0724         186 PLRVQKAQPASQPRSELSNNLDASFA-KKL---------------SRGKALLLEKSDNLY--VGNLPLKTAEEELADLFK  247 (306)
T ss_pred             eeEeeccccccccccccccccchhhh-ccc---------------cccccccccccceee--ccccccccchhHHHHhcc
Confidence            999999653 1000000000000000 000               000000011233444  889999999999999999


Q ss_pred             ccCCeeEEEEEcCC
Q 019494          160 AFGPVQKIAMFDKN  173 (340)
Q Consensus       160 ~fG~v~~v~i~~~~  173 (340)
                      .+|.+..+.+....
T Consensus       248 ~~~~~~~~~~~~~~  261 (306)
T COG0724         248 SRGDIVRASLPPSK  261 (306)
T ss_pred             ccccceeeeccCCC
Confidence            99999777765433

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=99.07  E-value=1.7e-10  Score=104.12  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=65.5

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      ++|+|||.++++.+|+.||++||+|+++.|++.    +|||+.+|...|..|+.+|||+.|.|.   .|+|+-||.+
T Consensus         5 LFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~---nInVeaSksK   74 (346)
T KOG0109|consen    5 LFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGV---NINVEASKSK   74 (346)
T ss_pred             hhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecce---EEEEEecccc
Confidence            349999999999999999999999999999853    799999999999999999999999999   9999999876

>smart00362 RRM_2 RNA recognition motif

Probab=99.05  E-value=6.6e-10  Score=80.00  Aligned_cols=68  Identities=25%  Similarity=0.361  Sum_probs=55.9

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEeeec--CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~--~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      ++||.+++.  ++++|+++|++||.|.++.+....  ..++|||+|.+.++|++|++.++|..+         .+++|+|
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---------~~~~i~v   71 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL---------GGRPLRV   71 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE---------CCEEEee
Confidence            467777764  379999999999999999887632  346899999999999999999999874         5888776


Q ss_pred             e
Q 019494           85 T   85 (340)
Q Consensus        85 ~   85 (340)
                      +
T Consensus        72 ~   72 (72)
T smart00362       72 E   72 (72)
T ss_pred             C
Confidence            3

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=99.04  E-value=2.6e-10  Score=100.32  Aligned_cols=71  Identities=15%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             ccccC---CCCCCCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            8 SRKYL---QWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         8 ~~~~l---~~~~~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..||+   .|++.+ |+|++.|++||+|.+.+++.    +++|+|+||+|+|.|+|.+|++.-|  .|        +.||
T Consensus        13 TKifVggL~w~T~~-~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--pi--------IdGR   81 (247)
T KOG0149|consen   13 TKIFVGGLAWETHK-ETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PI--------IDGR   81 (247)
T ss_pred             EEEEEcCcccccch-HHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Cc--------cccc
Confidence            34666   555565 89999999999999987765    4588899999999999999998544  33        6788


Q ss_pred             eEEEeeccC
Q 019494           81 TLRITYSAH   89 (340)
Q Consensus        81 ~l~v~~s~~   89 (340)
                      +..|..+.-
T Consensus        82 ~aNcnlA~l   90 (247)
T KOG0149|consen   82 KANCNLASL   90 (247)
T ss_pred             ccccchhhh
Confidence            888877653

>smart00361 RRM_1 RNA recognition motif

Probab=99.01  E-value=8.3e-10  Score=81.17  Aligned_cols=58  Identities=26%  Similarity=0.323  Sum_probs=48.3

Q ss_pred             HHHHHHhhc----ccCceeEEE--Eee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494           19 SGERAHVFS----AFGFVHKIT--TFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus        19 ee~L~~lF~----~fG~V~~v~--~~~-----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      ++||+++|+    .||.|.+|.  ++.     +.++++|||+|.+.++|.+|++.|||+.+         .|+.|+++
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---------~gr~l~~~   70 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---------DGRTVKAE   70 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEeC
Confidence            578888888    999999984  333     23577899999999999999999999985         68888763

>smart00360 RRM RNA recognition motif

Probab=99.01  E-value=1.5e-09  Score=77.70  Aligned_cols=63  Identities=24%  Similarity=0.376  Sum_probs=52.0

Q ss_pred             CCCCCCHHHHHHhhcccCceeEEEEeeec----CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494           13 QWQLSASGERAHVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus        13 ~~~~~~ee~L~~lF~~fG~V~~v~~~~~~----~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      ++..+ +++|+++|+.||.|.++.+.+..    .+++|||+|.+.++|.+|++.|++..+         .++.|+|+
T Consensus         5 ~~~~~-~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---------~~~~~~v~   71 (71)
T smart00360        5 PPDVT-EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---------DGRPLKVK   71 (71)
T ss_pred             CcccC-HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---------CCcEEEeC
Confidence            44444 69999999999999999887632    356899999999999999999998774         58887763

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=99.00  E-value=3.2e-10  Score=97.82  Aligned_cols=70  Identities=24%  Similarity=0.349  Sum_probs=60.4

Q ss_pred             cCCCCCCCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494           11 YLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus        11 ~l~~~~~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      +|.+.++ -++|+.+|++||.|.+|-|.+    +...+||||.|.+..+|+.|++.|+|..+         .|+.|+|++
T Consensus        20 NLTyRTs-pd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---------dgRelrVq~   89 (256)
T KOG4207|consen   20 NLTYRTS-PDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---------DGRELRVQM   89 (256)
T ss_pred             ceeccCC-HHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee---------ccceeeehh
Confidence            5555555 599999999999999998865    45677899999999999999999999984         699999999


Q ss_pred             ccCC
Q 019494           87 SAHT   90 (340)
Q Consensus        87 s~~~   90 (340)
                      ++-.
T Consensus        90 aryg   93 (256)
T KOG4207|consen   90 ARYG   93 (256)
T ss_pred             hhcC
Confidence            8843

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=99.00  E-value=5.9e-10  Score=94.63  Aligned_cols=74  Identities=16%  Similarity=0.301  Sum_probs=64.4

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC--CeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~--g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      +||+|||..|-+.+|++||.+||.|..|.+-...+  .| |||+|+|..+|..||..-+|+.+++-   .|+|+|+..-.
T Consensus         9 iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppf-afVeFEd~RDAeDAiygRdGYdydg~---rLRVEfprggr   84 (241)
T KOG0105|consen    9 IYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPF-AFVEFEDPRDAEDAIYGRDGYDYDGC---RLRVEFPRGGR   84 (241)
T ss_pred             EEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCe-eEEEecCccchhhhhhcccccccCcc---eEEEEeccCCC
Confidence            55999999999999999999999999998754332  34 99999999999999999999998874   99999976543

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=99.00  E-value=5.4e-10  Score=94.69  Aligned_cols=71  Identities=17%  Similarity=0.275  Sum_probs=65.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |||+||++.+|++.|+++|-+.|.|+++.|.+.     .+|+ |||+|.++|+|.-|++.||..+|+|+   +|+|.-+.
T Consensus        12 iyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGy-gF~Ef~~eedadYAikiln~VkLYgr---pIrv~kas   87 (203)
T KOG0131|consen   12 LYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGY-GFAEFRTEEDADYAIKILNMVKLYGR---PIRVNKAS   87 (203)
T ss_pred             EEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccce-eEEEEechhhhHHHHHHHHHHHhcCc---eeEEEecc
Confidence            559999999999999999999999999999753     3676 99999999999999999999999999   99998776

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.98  E-value=8.2e-10  Score=85.28  Aligned_cols=78  Identities=22%  Similarity=0.206  Sum_probs=64.3

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      +.|||.|++-+  .||..+||.+||.|..|++-. +..++-|||.|+|..+|.+|++.|+|..         +.++-|.|
T Consensus        19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n---------~~~ryl~v   89 (124)
T KOG0114|consen   19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN---------VDNRYLVV   89 (124)
T ss_pred             eeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc---------cCCceEEE
Confidence            45688777743  689999999999999998854 4455679999999999999999999988         46999999


Q ss_pred             eeccCCcccc
Q 019494           85 TYSAHTDLSV   94 (340)
Q Consensus        85 ~~s~~~~l~~   94 (340)
                      -|.+..+...
T Consensus        90 lyyq~~~~~~   99 (124)
T KOG0114|consen   90 LYYQPEDAFK   99 (124)
T ss_pred             EecCHHHHHH
Confidence            9988654433

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=1.2e-09  Score=96.48  Aligned_cols=64  Identities=20%  Similarity=0.311  Sum_probs=56.1

Q ss_pred             CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           18 ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        18 ~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      +|+||++||.+||.|.+|-+.+    +.+++||||.|.+.++|.+||+.|||.-+         ..--|+|+||+.+
T Consensus       202 ~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---------d~LILrvEwskP~  269 (270)
T KOG0122|consen  202 REDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---------DNLILRVEWSKPS  269 (270)
T ss_pred             ChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---------ceEEEEEEecCCC
Confidence            3799999999999999997776    34778899999999999999999999874         4667999999864

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.97  E-value=7.8e-11  Score=99.68  Aligned_cols=70  Identities=23%  Similarity=0.445  Sum_probs=64.7

Q ss_pred             EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          139 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       139 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +|||+||++.+||.+|..+||+||+|+.|.+.++     +.|| ||+.|+|..+..-|+..|||..|.|+   +|+|+-
T Consensus        37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF-aFLcYEDQRSTILAVDN~NGiki~gR---tirVDH  111 (219)
T KOG0126|consen   37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF-AFLCYEDQRSTILAVDNLNGIKILGR---TIRVDH  111 (219)
T ss_pred             EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce-EEEEecCccceEEEEeccCCceecce---eEEeee
Confidence            4679999999999999999999999999998864     3577 99999999999999999999999999   999984

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=98.96  E-value=1.6e-09  Score=87.59  Aligned_cols=74  Identities=19%  Similarity=0.382  Sum_probs=64.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +-+||  |.++.+..|+|++++.|..||+|+.|.+--+.     +| ||+|+|++.++|++|++.|||..|.++   .|.
T Consensus        72 GwIi~--VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KG-YaLvEYet~keAq~A~~~~Ng~~ll~q---~v~  145 (170)
T KOG0130|consen   72 GWIIF--VTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKG-YALVEYETLKEAQAAIDALNGAELLGQ---NVS  145 (170)
T ss_pred             eEEEE--EeccCcchhHHHHHHHHhhcccccceeeccccccccccc-eeeeehHhHHHHHHHHHhccchhhhCC---cee
Confidence            44566  77999999999999999999999999874332     24 599999999999999999999999999   888


Q ss_pred             EEeec
Q 019494          210 ISYSR  214 (340)
Q Consensus       210 v~~ak  214 (340)
                      |.|.-
T Consensus       146 VDw~F  150 (170)
T KOG0130|consen  146 VDWCF  150 (170)
T ss_pred             EEEEE
Confidence            88864

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=98.95  E-value=1.1e-08  Score=97.34  Aligned_cols=74  Identities=20%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .+.+|  |+.||.++.||+|.-||++-|+|-+++|+.+     ++|+ |||.|.+.++|++|++.||+++|..+  ..|.
T Consensus        83 G~EVf--vGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGY-AFVtf~~Ke~Aq~Aik~lnn~Eir~G--K~ig  157 (506)
T KOG0117|consen   83 GCEVF--VGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGY-AFVTFCTKEEAQEAIKELNNYEIRPG--KLLG  157 (506)
T ss_pred             CceEE--ecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcce-EEEEeecHHHHHHHHHHhhCccccCC--CEeE
Confidence            55555  9999999999999999999999999997643     4675 99999999999999999999999754  3777


Q ss_pred             EEee
Q 019494          210 ISYS  213 (340)
Q Consensus       210 v~~a  213 (340)
                      |+.|
T Consensus       158 vc~S  161 (506)
T KOG0117|consen  158 VCVS  161 (506)
T ss_pred             EEEe
Confidence            7766

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=98.94  E-value=1.7e-09  Score=95.28  Aligned_cols=76  Identities=13%  Similarity=0.242  Sum_probs=62.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++.-.|+|++|+++.+.|.|++.|++||+|++.+++.+     ++|+ |||.|.|.++|.+|.+.-| -.|+|+   +..
T Consensus        10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGy-GfVTf~d~~aa~rAc~dp~-piIdGR---~aN   84 (247)
T KOG0149|consen   10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGY-GFVTFRDAEAATRACKDPN-PIIDGR---KAN   84 (247)
T ss_pred             ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccce-eeEEeecHHHHHHHhcCCC-Cccccc---ccc
Confidence            34445669999999999999999999999999887643     3575 9999999999999998755 368888   777


Q ss_pred             EEeecC
Q 019494          210 ISYSRH  215 (340)
Q Consensus       210 v~~ak~  215 (340)
                      |.+|..
T Consensus        85 cnlA~l   90 (247)
T KOG0149|consen   85 CNLASL   90 (247)
T ss_pred             cchhhh
Confidence            777654

>PLN03121 nucleic acid binding protein; Provisional

Probab=98.94  E-value=2.2e-09  Score=95.87  Aligned_cols=70  Identities=19%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      -+|++|+..  +|+||+++|+.||+|.+|.+.+ +..+++|||+|.+.++|+.|+ .|+|..|         .+++|.|.
T Consensus         7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l---------~d~~I~It   76 (243)
T PLN03121          7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATI---------VDQRVCIT   76 (243)
T ss_pred             EEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCee---------CCceEEEE
Confidence            367777773  3899999999999999999887 345568999999999999999 7999985         58889988


Q ss_pred             ecc
Q 019494           86 YSA   88 (340)
Q Consensus        86 ~s~   88 (340)
                      -..
T Consensus        77 ~~~   79 (243)
T PLN03121         77 RWG   79 (243)
T ss_pred             eCc
Confidence            655

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=98.93  E-value=4.3e-09  Score=95.52  Aligned_cols=79  Identities=19%  Similarity=0.400  Sum_probs=69.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      +-++||  |.-|++.++|..|+..|+.||.|++|.|+..     ++|+ |||+|++..+..+|.+..+|..|+++   .|
T Consensus       100 Py~TLF--v~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGY-AFIeye~erdm~~AYK~adG~~Idgr---ri  173 (335)
T KOG0113|consen  100 PYKTLF--VARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGY-AFIEYEHERDMKAAYKDADGIKIDGR---RI  173 (335)
T ss_pred             ccceee--eeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccce-EEEEeccHHHHHHHHHhccCceecCc---EE
Confidence            467888  8889999999999999999999999998753     4675 99999999999999999999999999   88


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      -|++-....+
T Consensus       174 ~VDvERgRTv  183 (335)
T KOG0113|consen  174 LVDVERGRTV  183 (335)
T ss_pred             EEEecccccc
Confidence            8887655443

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=98.92  E-value=4.4e-09  Score=95.30  Aligned_cols=75  Identities=27%  Similarity=0.521  Sum_probs=66.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ..+|+  |+||+..+|+++|+++|..||.|.+|.+..+     .+|+ |||+|.+.++|..|++.++|..|.++   .|+
T Consensus       115 ~~~l~--v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~-~~v~f~~~~~~~~a~~~~~~~~~~~~---~~~  188 (306)
T COG0724         115 NNTLF--VGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGF-AFVEFESEESAEKAIEELNGKELEGR---PLR  188 (306)
T ss_pred             CceEE--EeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCce-EEEEecCHHHHHHHHHHcCCCeECCc---eeE
Confidence            35555  9999999999999999999999999887543     3576 99999999999999999999999999   999


Q ss_pred             EEeecC
Q 019494          210 ISYSRH  215 (340)
Q Consensus       210 v~~ak~  215 (340)
                      |.++..
T Consensus       189 v~~~~~  194 (306)
T COG0724         189 VQKAQP  194 (306)
T ss_pred             eecccc
Confidence            999653

>smart00361 RRM_1 RNA recognition motif

Probab=98.91  E-value=3.8e-09  Score=77.63  Aligned_cols=56  Identities=25%  Similarity=0.326  Sum_probs=47.7

Q ss_pred             HHHHHHHHc----ccCCeeEEE-E-Ec------CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          151 LDVLHMVFS----AFGPVQKIA-M-FD------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       151 ~~~L~~~F~----~fG~v~~v~-i-~~------~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +++|+++|+    .||.|.+|. + ..      .++|+ |||+|.+.++|.+|++.|||..+.|+   .|++
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~-~fV~f~~~~dA~~A~~~l~g~~~~gr---~l~~   69 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGN-VYITFERSEDAARAIVDLNGRYFDGR---TVKA   69 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEe
Confidence            578888888    999999985 3 32      23676 99999999999999999999999998   7775

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=98.91  E-value=6.9e-09  Score=75.01  Aligned_cols=68  Identities=26%  Similarity=0.427  Sum_probs=56.5

Q ss_pred             ccCCCCCC--CHHHHHHhhcccCceeEEEEeeec---CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494           10 KYLQWQLS--ASGERAHVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus        10 ~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~---~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      +||.+++.  ++++|+++|+.||.|.++.+.+..   ..++|||+|.+.++|..|++.+++..+         .++.+.|
T Consensus         2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~---------~~~~~~v   72 (74)
T cd00590           2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL---------GGRPLRV   72 (74)
T ss_pred             EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEE
Confidence            56666664  479999999999999999887632   356899999999999999999999874         5888887


Q ss_pred             ee
Q 019494           85 TY   86 (340)
Q Consensus        85 ~~   86 (340)
                      ++
T Consensus        73 ~~   74 (74)
T cd00590          73 EF   74 (74)
T ss_pred             eC
Confidence            64

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.86  E-value=2.1e-09  Score=109.63  Aligned_cols=157  Identities=22%  Similarity=0.213  Sum_probs=126.6

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      .+.-||++++..+  +.+|+..|+.+|+|.+|.|..   +..-.||||.|.+...+-+|+-++.+..|         ...
T Consensus       371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I---------~~g  441 (975)
T KOG0112|consen  371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLI---------GNG  441 (975)
T ss_pred             hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcc---------ccC
Confidence            3456799998865  899999999999999998765   23334699999999999999999999886         233


Q ss_pred             eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494           81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA  160 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~  160 (340)
                      .+++.+...+                                         ..+++-++  ++.|..++....|...|..
T Consensus       442 ~~r~glG~~k-----------------------------------------st~ttr~~--sgglg~w~p~~~l~r~fd~  478 (975)
T KOG0112|consen  442 THRIGLGQPK-----------------------------------------STPTTRLQ--SGGLGPWSPVSRLNREFDR  478 (975)
T ss_pred             cccccccccc-----------------------------------------cccceeec--cCCCCCCChHHHHHHHhhc
Confidence            4555544321                                         01245566  8899999999999999999


Q ss_pred             cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          161 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       161 fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      ||.|..|.+-....  +|+|+|++...|+.|++.|-|..|.+. ...|+|.|++...
T Consensus       479 fGpir~Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P-~~r~rvdla~~~~  532 (975)
T KOG0112|consen  479 FGPIRIIDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGP-PRRLRVDLASPPG  532 (975)
T ss_pred             cCcceeeecccCCc--ceeeecccCccchhhHHHHhcCcCCCC-CcccccccccCCC
Confidence            99999887765443  799999999999999999999999876 5689999997654

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=98.85  E-value=6.1e-09  Score=101.58  Aligned_cols=74  Identities=24%  Similarity=0.407  Sum_probs=66.7

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|+|+++++++|+|.++|+..|.|..+++..+     .+|| ||++|.+.++|..|++.|||+++.++   +|+|.|+.
T Consensus        21 v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~-~f~~~~~~~~~~~a~~~lNg~~~~gr---~l~v~~~~   96 (435)
T KOG0108|consen   21 VFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGF-GFCEFTDEETAERAIRNLNGAEFNGR---KLRVNYAS   96 (435)
T ss_pred             eEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCce-eeEecCchhhHHHHHHhcCCcccCCc---eEEeeccc
Confidence            449999999999999999999999999997643     2566 99999999999999999999999999   99999996


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ...
T Consensus        97 ~~~   99 (435)
T KOG0108|consen   97 NRK   99 (435)
T ss_pred             ccc
Confidence            553

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=98.84  E-value=5.4e-07  Score=91.06  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=63.6

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      +.-|||+.+++.  |.||+++|+.||+|.+|.++.  ..++|||.+....+|.+|+..|++..         +.++.|+|
T Consensus       421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~k---------v~~k~Iki  489 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVK---------VADKTIKI  489 (894)
T ss_pred             eeeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhccc---------ccceeeEE
Confidence            344788888854  899999999999999998876  44579999999999999999999877         47999999


Q ss_pred             eeccCCc
Q 019494           85 TYSAHTD   91 (340)
Q Consensus        85 ~~s~~~~   91 (340)
                      .|+..+.
T Consensus       490 ~Wa~g~G  496 (894)
T KOG0132|consen  490 AWAVGKG  496 (894)
T ss_pred             eeeccCC
Confidence            9987653

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.80  E-value=5.1e-10  Score=94.80  Aligned_cols=71  Identities=21%  Similarity=0.233  Sum_probs=63.0

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +.=|||++++-+  |.||.-+|++||+|++|.+++    +++++|||+.|.|..+-.-|++.|||..|         .|+
T Consensus        35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki---------~gR  105 (219)
T KOG0126|consen   35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI---------LGR  105 (219)
T ss_pred             ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee---------cce
Confidence            345799999855  899999999999999999987    45788999999999999999999999885         699


Q ss_pred             eEEEee
Q 019494           81 TLRITY   86 (340)
Q Consensus        81 ~l~v~~   86 (340)
                      +|+|..
T Consensus       106 tirVDH  111 (219)
T KOG0126|consen  106 TIRVDH  111 (219)
T ss_pred             eEEeee
Confidence            999975

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=98.80  E-value=5.8e-09  Score=84.33  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             ccCCCCC--CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494           10 KYLQWQL--SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus        10 ~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ||+.++.  ++||||.+.|..||+|.+|.+.-    +-.|+||+|||.+.++|++|++.|||..+         -+.+|.
T Consensus        75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l---------l~q~v~  145 (170)
T KOG0130|consen   75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL---------LGQNVS  145 (170)
T ss_pred             EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh---------hCCcee
Confidence            4555544  34899999999999999997642    23577899999999999999999999985         588899


Q ss_pred             Eeecc
Q 019494           84 ITYSA   88 (340)
Q Consensus        84 v~~s~   88 (340)
                      |.|+-
T Consensus       146 VDw~F  150 (170)
T KOG0130|consen  146 VDWCF  150 (170)
T ss_pred             EEEEE
Confidence            98864

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.5e-08  Score=93.93  Aligned_cols=83  Identities=22%  Similarity=0.420  Sum_probs=71.3

Q ss_pred             CCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC-C---eEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          130 KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-G---LQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       130 ~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~-g---~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      ...||.+|||  |-.|.+-+|+|+|+-|||+||+|..+.+.+..+ |   .+|||+|++.++..+|.=.|++.-|+.+  
T Consensus       234 d~~PPeNVLF--VCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr--  309 (479)
T KOG0415|consen  234 DVKPPENVLF--VCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR--  309 (479)
T ss_pred             ccCCCcceEE--EEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc--
Confidence            3468899999  556666788999999999999999999876442 3   3799999999999999999999999999  


Q ss_pred             cEEEEEeecCCC
Q 019494          206 CKLHISYSRHTD  217 (340)
Q Consensus       206 ~~l~v~~ak~~~  217 (340)
                       .|+|.||..-+
T Consensus       310 -RIHVDFSQSVs  320 (479)
T KOG0415|consen  310 -RIHVDFSQSVS  320 (479)
T ss_pred             -eEEeehhhhhh
Confidence             99999986544

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=98.76  E-value=1.9e-08  Score=91.38  Aligned_cols=75  Identities=12%  Similarity=0.213  Sum_probs=63.3

Q ss_pred             ccccccCCCCC--CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQL--SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      |..-|||.-+.  |+|.+|+..|+.||+|.+|++++    +++++||||+|.++.+...|.+..+|..|         .|
T Consensus       100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I---------dg  170 (335)
T KOG0113|consen  100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI---------DG  170 (335)
T ss_pred             ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee---------cC
Confidence            34456776555  44899999999999999999887    46788999999999999999999999986         59


Q ss_pred             ceEEEeeccC
Q 019494           80 CTLRITYSAH   89 (340)
Q Consensus        80 ~~l~v~~s~~   89 (340)
                      +.|-|.+-..
T Consensus       171 rri~VDvERg  180 (335)
T KOG0113|consen  171 RRILVDVERG  180 (335)
T ss_pred             cEEEEEeccc
Confidence            9999988653

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=6.2e-09  Score=90.68  Aligned_cols=76  Identities=16%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      -||++.+..+  |.-|...|-+||.|.+|.+.-    .+.++||||||...|+|..||+.||+.+++         |++|
T Consensus        12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---------Grti   82 (298)
T KOG0111|consen   12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---------GRTI   82 (298)
T ss_pred             eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---------ceeE
Confidence            4699888755  788999999999999997743    234567999999999999999999999964         9999


Q ss_pred             EEeeccCCccc
Q 019494           83 RITYSAHTDLS   93 (340)
Q Consensus        83 ~v~~s~~~~l~   93 (340)
                      +|.|++..++.
T Consensus        83 rVN~AkP~kik   93 (298)
T KOG0111|consen   83 RVNLAKPEKIK   93 (298)
T ss_pred             EEeecCCcccc
Confidence            99999866543

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=98.73  E-value=2.4e-08  Score=97.42  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=66.2

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +.+|+++++-+  ||+|.++|+..|.|.++++..    ++.++|||++|.+.|+|.+|++.|||.++         .|++
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---------~gr~   89 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---------NGRK   89 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---------CCce
Confidence            77899999965  899999999999999998765    45677899999999999999999999994         7999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|.|+...
T Consensus        90 l~v~~~~~~   98 (435)
T KOG0108|consen   90 LRVNYASNR   98 (435)
T ss_pred             EEeeccccc
Confidence            999998744

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.71  E-value=3.8e-08  Score=91.15  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=65.1

Q ss_pred             cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc-CCeeCCCCccEEEEEeec
Q 019494          136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln-g~~i~~~~~~~l~v~~ak  214 (340)
                      ....+||++|-..++|.+|++.|.+||+|..|+++..++  ||||+|.++++|+.|.+.+- ...|.|.   +|+|.|++
T Consensus       227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~---Rl~i~Wg~  301 (377)
T KOG0153|consen  227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGF---RLKIKWGR  301 (377)
T ss_pred             ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecce---EEEEEeCC
Confidence            344466999988999999999999999999999988776  89999999999999986654 4466777   99999998


Q ss_pred             C
Q 019494          215 H  215 (340)
Q Consensus       215 ~  215 (340)
                      +
T Consensus       302 ~  302 (377)
T KOG0153|consen  302 P  302 (377)
T ss_pred             C
Confidence            8

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=6.6e-09  Score=101.39  Aligned_cols=173  Identities=17%  Similarity=0.171  Sum_probs=110.3

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      .-|.|-+++.+  +++|+++|+.||+|.+|+.-.. ..+.+||+|.|..+|++|+++|++.+|         .++.|+..
T Consensus        76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~---------~~~~~k~~  145 (549)
T KOG4660|consen   76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREI---------AGKRIKRP  145 (549)
T ss_pred             ceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHh---------hhhhhcCC
Confidence            34555566644  7999999999999999866543 445799999999999999999999996         47776633


Q ss_pred             eccCCcccccccCcCC--cCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019494           86 YSAHTDLSVKFQSHRS--RDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP  163 (340)
Q Consensus        86 ~s~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~  163 (340)
                      .+.......  +....  .++..+.+    .      .+..+|.      .+++    +..|.+.++..-++.+|+.+|.
T Consensus       146 ~~~~~~~~~--~~~~~~~~~~~~p~a----~------s~pgg~~------~~~~----~g~l~P~~s~~~~~~~~~~~~~  203 (549)
T KOG4660|consen  146 GGARRAMGL--QSGTSFLNHFGSPLA----N------SPPGGWP------RGQL----FGMLSPTRSSILLEHISSVDGS  203 (549)
T ss_pred             Ccccccchh--cccchhhhhccchhh----c------CCCCCCc------CCcc----eeeeccchhhhhhhcchhccCc
Confidence            322221110  00000  00000000    0      0000111      1222    2238888888888999999998


Q ss_pred             eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494          164 VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       164 v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~  218 (340)
                      +..=.....+.  +-|++|.+..+++.+...+ |..+.+.   ..-++|+.+..+
T Consensus       204 ~~~~~~~~~~h--q~~~~~~~~~s~a~~~~~~-G~~~s~~---~~v~t~S~~~g~  252 (549)
T KOG4660|consen  204 SPGRETPLLNH--QRFVEFADNRSYAFSEPRG-GFLISNS---SGVITFSGPGGV  252 (549)
T ss_pred             cccccccchhh--hhhhhhccccchhhcccCC-ceecCCC---CceEEecCCCcc
Confidence            87722333444  6899999999997777644 6677776   677888877443

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=98.57  E-value=1.1e-07  Score=85.10  Aligned_cols=82  Identities=17%  Similarity=0.306  Sum_probs=68.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      .+.||  |+-|...-+|||++.+|..||.|+++.+.+..    +| ||||+|.+..+|..||..|+|....-+-...|.|
T Consensus        19 drklf--vgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKG-CAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV   95 (371)
T KOG0146|consen   19 DRKLF--VGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKG-CAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV   95 (371)
T ss_pred             chhhh--hhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCC-ceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence            45677  77777889999999999999999999987632    45 6999999999999999999999765443568999


Q ss_pred             EeecCCCCc
Q 019494          211 SYSRHTDLS  219 (340)
Q Consensus       211 ~~ak~~~~~  219 (340)
                      +|++....+
T Consensus        96 K~ADTdkER  104 (371)
T KOG0146|consen   96 KFADTDKER  104 (371)
T ss_pred             EeccchHHH
Confidence            999766543

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=98.56  E-value=1.6e-07  Score=89.19  Aligned_cols=69  Identities=20%  Similarity=0.265  Sum_probs=61.3

Q ss_pred             EEeecCCCCCCHHHHHHHHc-ccCCeeEEEEEc----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          140 ASIENMQYAVTLDVLHMVFS-AFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~-~fG~v~~v~i~~----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      |||.|+|+++.+++|++||. +-|+|+.|.++-    |.+| ||.|||+++|.+++|++.||.+++.++   +|+|+-
T Consensus        47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rG-cavVEFk~~E~~qKa~E~lnk~~~~GR---~l~vKE  120 (608)
T KOG4212|consen   47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARG-CAVVEFKDPENVQKALEKLNKYEVNGR---ELVVKE  120 (608)
T ss_pred             EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCC-ceEEEeeCHHHHHHHHHHhhhccccCc---eEEEec
Confidence            66999999999999999995 588999999763    3456 699999999999999999999999999   888873

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=6.4e-08  Score=94.64  Aligned_cols=70  Identities=24%  Similarity=0.415  Sum_probs=62.8

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +...|+  |.||+..||+++|+.+|+.||+|..|..-..++|. .||+|-|..+|++|+++||+.+|.++   .|+
T Consensus        74 ~~~~L~--v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~-~~v~FyDvR~A~~Alk~l~~~~~~~~---~~k  143 (549)
T KOG4660|consen   74 NQGTLV--VFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGI-VFVEFYDVRDAERALKALNRREIAGK---RIK  143 (549)
T ss_pred             ccceEE--EEecCCcCCHHHHHHHHHhhcchhhhhcccccCce-EEEEEeehHhHHHHHHHHHHHHhhhh---hhc
Confidence            356677  77999999999999999999999998876666674 99999999999999999999999998   666

>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]

Probab=98.51  E-value=4.8e-08  Score=85.19  Aligned_cols=74  Identities=20%  Similarity=0.341  Sum_probs=65.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCC---eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g---~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      ..+|+  |.|+...||||-|.++|-.-|.|.||.|...+.+   | |||.|+++-+..-|++.+||..++++   .++|+
T Consensus         9 drtl~--v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kF-a~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~~   82 (267)
T KOG4454|consen    9 DRTLL--VQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKF-AYVFFPNENSVQLAGQLENGDDLEED---EEQRT   82 (267)
T ss_pred             hhHHH--HHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCce-eeeecccccchhhhhhhcccchhccc---hhhcc
Confidence            55666  8999999999999999999999999999764422   5 99999999999999999999999999   88888


Q ss_pred             eec
Q 019494          212 YSR  214 (340)
Q Consensus       212 ~ak  214 (340)
                      +-.
T Consensus        83 ~r~   85 (267)
T KOG4454|consen   83 LRC   85 (267)
T ss_pred             ccc
Confidence            754

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.49  E-value=2e-07  Score=86.38  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=60.4

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      -|||+++-.+  |.||++.|.+||+|..|+++.+  +++|||+|.+.++|+.|.+..-+..+        +.|++|+|.|
T Consensus       230 tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~--~~CAFv~ftTR~aAE~Aae~~~n~lv--------I~G~Rl~i~W  299 (377)
T KOG0153|consen  230 TLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR--KGCAFVTFTTREAAEKAAEKSFNKLV--------INGFRLKIKW  299 (377)
T ss_pred             EEEecccccchhHHHHHHHHhhcCCeeeEEeecc--cccceeeehhhHHHHHHHHhhcceee--------ecceEEEEEe
Confidence            4688776544  8999999999999999998874  34799999999999999987777654        7899999999


Q ss_pred             ccC
Q 019494           87 SAH   89 (340)
Q Consensus        87 s~~   89 (340)
                      +..
T Consensus       300 g~~  302 (377)
T KOG0153|consen  300 GRP  302 (377)
T ss_pred             CCC
Confidence            876

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=98.49  E-value=1.2e-06  Score=76.81  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCC-----eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG-----LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g-----~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ++||  |.+||.+|..-+|+.||..|-..+-..+-..+++     -.|||.|.+..+|..|+.+|||..++-....+|+|
T Consensus        35 RTLF--VSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi  112 (284)
T KOG1457|consen   35 RTLF--VSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI  112 (284)
T ss_pred             ceee--eccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence            5666  8899999999999999999876666544322222     35999999999999999999999998765559999


Q ss_pred             EeecCCCCc
Q 019494          211 SYSRHTDLS  219 (340)
Q Consensus       211 ~~ak~~~~~  219 (340)
                      +++|.....
T Consensus       113 ElAKSNtK~  121 (284)
T KOG1457|consen  113 ELAKSNTKR  121 (284)
T ss_pred             eehhcCccc
Confidence            999987654

>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]

Probab=98.46  E-value=6.8e-08  Score=84.27  Aligned_cols=133  Identities=19%  Similarity=0.223  Sum_probs=98.2

Q ss_pred             ccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494           10 KYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus        10 ~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      ||+.+..+  +||.|.+||-+-|.|.+|.|.+   .+.| ||||+|.++-+..-|++.|||..++         +..++|
T Consensus        12 l~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~---------~~e~q~   81 (267)
T KOG4454|consen   12 LLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE---------EDEEQR   81 (267)
T ss_pred             HHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc---------cchhhc
Confidence            56766664  4889999999999999999876   2345 6999999999999999999998854         665555


Q ss_pred             eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019494           85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV  164 (340)
Q Consensus        85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v  164 (340)
                      .+-.-+                                            +      -.-|+..+|++.++.+|+.-|.+
T Consensus        82 ~~r~G~--------------------------------------------s------hapld~r~~~ei~~~v~s~a~p~  111 (267)
T KOG4454|consen   82 TLRCGN--------------------------------------------S------HAPLDERVTEEILYEVFSQAGPI  111 (267)
T ss_pred             ccccCC--------------------------------------------C------cchhhhhcchhhheeeecccCCC
Confidence            532111                                            0      01245678999999999999999


Q ss_pred             eEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          165 QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       165 ~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      .-+++.+..    +.+ +|+.+.-.-+.-.|+...++..+.-+
T Consensus       112 ~~~R~~~~~d~rnrn~-~~~~~qr~~~~P~~~~~y~~l~~~~~  153 (267)
T KOG4454|consen  112 EGVRIPTDNDGRNRNF-GFVTYQRLCAVPFALDLYQGLELFQK  153 (267)
T ss_pred             CCccccccccCCccCc-cchhhhhhhcCcHHhhhhcccCcCCC
Confidence            999886543    334 78877766666677776666655544

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=98.42  E-value=1.2e-06  Score=86.37  Aligned_cols=182  Identities=16%  Similarity=0.159  Sum_probs=117.3

Q ss_pred             cccccccCCCCCCC--HHHHHHhhccc-----------Cc-eeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAF-----------GF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR   70 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~f-----------G~-V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~   70 (340)
                      +..-|+|+++++.+  |+..-.+|..-           |+ |..+.+..  .+.+|||+|.+.++|..|+ .+++..   
T Consensus       173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~--~~nfa~ie~~s~~~at~~~-~~~~~~---  246 (500)
T KOG0120|consen  173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL--EKNFAFIEFRSISEATEAM-ALDGII---  246 (500)
T ss_pred             hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc--cccceeEEecCCCchhhhh-cccchh---
Confidence            44567888888865  67777777665           43 55555433  4457999999999999998 466654   


Q ss_pred             cCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCC
Q 019494           71 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVT  150 (340)
Q Consensus        71 ~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt  150 (340)
                            +.|.++++.--...........          ......+.      ...+...  ........++|++|+..++
T Consensus       247 ------f~g~~~~~~r~~d~~~~p~~~~----------~~~~~~~~------~~~~~~t--~~~~~~~ki~v~~lp~~l~  302 (500)
T KOG0120|consen  247 ------FEGRPLKIRRPHDYQPVPGITL----------SPSQLGKV------GLLPAST--DVPDSPNKIFVGGLPLYLT  302 (500)
T ss_pred             ------hCCCCceecccccccCCccchh----------hhcccccc------CCccccc--CcccccchhhhccCcCccC
Confidence                  3566666542211100000000          00000000      0000000  0012223345899999999


Q ss_pred             HHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCcc
Q 019494          151 LDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI  220 (340)
Q Consensus       151 ~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~  220 (340)
                      ++++.++.+.||.+....++..     +.|+ ||.+|.|..-...|+..|||..+.++   .|.|..+-....+.
T Consensus       303 ~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~-af~ey~dpsvtd~A~agLnGm~lgd~---~lvvq~A~~g~~~~  373 (500)
T KOG0120|consen  303 EDQVKELLDSFGPLKAFRLVKDSATGNSKGF-AFCEYCDPSVTDQAIAGLNGMQLGDK---KLVVQRAIVGASNA  373 (500)
T ss_pred             HHHHHHHHHhcccchhheeecccccccccce-eeeeeeCCcchhhhhcccchhhhcCc---eeEeehhhccchhc
Confidence            9999999999999888776543     2454 99999999999999999999999998   99998876655444

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.4e-07  Score=86.00  Aligned_cols=64  Identities=17%  Similarity=0.285  Sum_probs=55.8

Q ss_pred             CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccC
Q 019494           17 SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH   89 (340)
Q Consensus        17 ~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~   89 (340)
                      |+.|||+-||++||+|.++.+++    +.+-.||||||.+.++.++|.-.|++..|         .++.|.|.||+.
T Consensus       251 TtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI---------DDrRIHVDFSQS  318 (479)
T KOG0415|consen  251 TTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI---------DDRRIHVDFSQS  318 (479)
T ss_pred             ccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee---------ccceEEeehhhh
Confidence            44589999999999999998887    23455799999999999999999999875         599999999984

>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]

Probab=98.37  E-value=8.8e-07  Score=76.85  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=55.3

Q ss_pred             cCCCCCC--CHHHHHHhhccc-CceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494           11 YLQWQLS--ASGERAHVFSAF-GFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus        11 ~l~~~~~--~ee~L~~lF~~f-G~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      |+..++.  .|.+|..+|.+| |.|.++++-+    +++++||||||.++|.|.-|-+.|||..+         .++-|.
T Consensus        53 ~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl---------~e~lL~  123 (214)
T KOG4208|consen   53 YVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL---------MEHLLE  123 (214)
T ss_pred             eecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh---------hhheee
Confidence            4444442  378999999999 7788887744    46889999999999999999999999875         477788


Q ss_pred             Eeecc
Q 019494           84 ITYSA   88 (340)
Q Consensus        84 v~~s~   88 (340)
                      |.+-.
T Consensus       124 c~vmp  128 (214)
T KOG4208|consen  124 CHVMP  128 (214)
T ss_pred             eEEeC
Confidence            87744

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=98.36  E-value=2.3e-06  Score=83.22  Aligned_cols=72  Identities=21%  Similarity=0.259  Sum_probs=59.9

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH  215 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~  215 (340)
                      |+|.|||.+++.++|+++|..||.|++..|..++    .+.+|||+|.+.+++..|+++ +-..|.++   +|.|+--+.
T Consensus       291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~---kl~Veek~~  366 (419)
T KOG0116|consen  291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGR---KLNVEEKRP  366 (419)
T ss_pred             eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCe---eEEEEeccc
Confidence            6699999999999999999999999999987644    114699999999999999987 45667776   888885443

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=98.35  E-value=2.4e-06  Score=63.91  Aligned_cols=69  Identities=22%  Similarity=0.429  Sum_probs=46.7

Q ss_pred             EEeecCCCCCCHH----HHHHHHcccC-CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLD----VLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~----~L~~~F~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|.|||.+.+..    .|++|+..+| +|..|     ..+ .|+|.|.+.+.|.+|.+.|+|..++|.   .|.|+|..
T Consensus         5 L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~-tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v~~~~   75 (90)
T PF11608_consen    5 LYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGG-TAILRFPNQEFAERAQKRMEGEDVFGN---KISVSFSP   75 (90)
T ss_dssp             EEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT--EEEEESSHHHHHHHHHHHTT--SSSS-----EEESS-
T ss_pred             EEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCC-EEEEEeCCHHHHHHHHHhhcccccccc---eEEEEEcC
Confidence            4488999888755    4778898988 55554     224 499999999999999999999999999   99999985


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ..+
T Consensus        76 ~~r   78 (90)
T PF11608_consen   76 KNR   78 (90)
T ss_dssp             -S-
T ss_pred             Ccc
Confidence            443

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=98.33  E-value=2.4e-05  Score=72.84  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=64.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC  206 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~  206 (340)
                      .++.+.+||+||-+++|+++|.+....-|  .|.++++|..     ++|| |+|...+..+..+.++.|-...|.|++  
T Consensus        77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~-AL~~~~SdAa~Kq~MeiLP~k~iHGQ~--  153 (498)
T KOG4849|consen   77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGY-ALLVLNSDAAVKQTMEILPTKTIHGQS--  153 (498)
T ss_pred             cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccce-EEEEecchHHHHHHHHhcccceecCCC--
Confidence            46788899999999999999998887777  5667777753     2566 999999999999999999999999983  


Q ss_pred             EEEEEeecC
Q 019494          207 KLHISYSRH  215 (340)
Q Consensus       207 ~l~v~~ak~  215 (340)
                      ...+.|-|.
T Consensus       154 P~V~~~NK~  162 (498)
T KOG4849|consen  154 PTVLSYNKT  162 (498)
T ss_pred             Ceeeccchh
Confidence            556666553

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=98.28  E-value=2.2e-06  Score=84.03  Aligned_cols=77  Identities=13%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC--C--eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--G--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~--g--~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ++.|+  |.+|...+-..+|++||++||+|+-.+++...+  |  +|+||.+.+.++|.++|++|+.++|.|+   .|.|
T Consensus       405 gRNlW--VSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr---mISV  479 (940)
T KOG4661|consen  405 GRNLW--VSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR---MISV  479 (940)
T ss_pred             cccee--eeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce---eeee
Confidence            56688  779987888899999999999999888775432  2  4799999999999999999999999999   9999


Q ss_pred             EeecCC
Q 019494          211 SYSRHT  216 (340)
Q Consensus       211 ~~ak~~  216 (340)
                      .-+|..
T Consensus       480 EkaKNE  485 (940)
T KOG4661|consen  480 EKAKNE  485 (940)
T ss_pred             eecccC
Confidence            988755

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]

Probab=98.28  E-value=9.7e-08  Score=90.37  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=116.4

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCc-eeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~-V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ++.+|++|+...  -+||+.+|..--. ...-.+++  + +||||.+.|..-|.+|++.++|+.-        +-|+++.
T Consensus         1 mnklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--~-gyafvd~pdq~wa~kaie~~sgk~e--------lqGkr~e   69 (584)
T KOG2193|consen    1 MNKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--S-GYAFVDCPDQQWANKAIETLSGKVE--------LQGKRQE   69 (584)
T ss_pred             CCcccccccCCCCChHHHHHHhccccCCCCcceeee--c-ceeeccCCchhhhhhhHHhhchhhh--------hcCceee
Confidence            467888888743  6899999977621 12222332  3 4899999999999999999999874        6799999


Q ss_pred             EeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019494           84 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP  163 (340)
Q Consensus        84 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~  163 (340)
                      +.++-.+...                                         ++.+-  +.|++...-++.|..|...||.
T Consensus        70 ~~~sv~kkqr-----------------------------------------srk~Q--irnippql~wevld~Ll~qyg~  106 (584)
T KOG2193|consen   70 VEHSVPKKQR-----------------------------------------SRKIQ--IRNIPPQLQWEVLDSLLAQYGT  106 (584)
T ss_pred             ccchhhHHHH-----------------------------------------hhhhh--HhcCCHHHHHHHHHHHHhccCC
Confidence            9887655321                                         22233  7899999999999999999999


Q ss_pred             eeEEEEEc-CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          164 VQKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       164 v~~v~i~~-~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      |+.+.... .......=|.|...+.+..|+.+|||..+.+.   .+++.|--..
T Consensus       107 ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~k~~YiPde  157 (584)
T KOG2193|consen  107 VENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HLKVGYIPDE  157 (584)
T ss_pred             HhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hhhcccCchh
Confidence            99987533 22211234679999999999999999999998   9999986543

>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]

Probab=98.23  E-value=3.9e-06  Score=75.89  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=64.9

Q ss_pred             EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          138 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       138 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ..|+|.||++.|++++|++||..||.++++.+..+.    .| +|-|.|...++|.+|++.+||..++|+   .|++...
T Consensus        84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~G-ta~v~~~r~~DA~~avk~~~gv~ldG~---~mk~~~i  159 (243)
T KOG0533|consen   84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLG-TADVSFNRRDDAERAVKKYNGVALDGR---PMKIEII  159 (243)
T ss_pred             ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCc-cceeeecchHhHHHHHHHhcCcccCCc---eeeeEEe
Confidence            445689999999999999999999999988875433    24 599999999999999999999999999   8888876


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      ....
T Consensus       160 ~~~~  163 (243)
T KOG0533|consen  160 SSPS  163 (243)
T ss_pred             cCcc
Confidence            5544

>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]

Probab=98.21  E-value=4.1e-06  Score=72.75  Aligned_cols=73  Identities=14%  Similarity=0.253  Sum_probs=62.6

Q ss_pred             EEeecCCCCCCHHHHHHHHccc-CCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAF-GPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~f-G~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +++..++.-+-+.++...|.+| |.|.++++-+.     ++|+ |||+|++.+.|.-|-+.||++-++++   .|.|.|-
T Consensus        52 ~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgY-AFVEFEs~eVA~IaAETMNNYLl~e~---lL~c~vm  127 (214)
T KOG4208|consen   52 VYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGY-AFVEFESEEVAKIAAETMNNYLLMEH---LLECHVM  127 (214)
T ss_pred             eeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCce-EEEEeccHHHHHHHHHHhhhhhhhhh---eeeeEEe
Confidence            4488999999999999999999 66676666432     2454 99999999999999999999999999   9999998


Q ss_pred             cCC
Q 019494          214 RHT  216 (340)
Q Consensus       214 k~~  216 (340)
                      .+.
T Consensus       128 ppe  130 (214)
T KOG4208|consen  128 PPE  130 (214)
T ss_pred             Cch
Confidence            776

>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]

Probab=98.18  E-value=2.5e-06  Score=79.54  Aligned_cols=168  Identities=13%  Similarity=0.139  Sum_probs=115.0

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      .++..|++...-.  +.++..++...|.+....+..    -..++++.|.|...+.+..|+.......+         .+
T Consensus        87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~---------~~  157 (285)
T KOG4210|consen   87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVL---------DG  157 (285)
T ss_pred             ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccc---------cc
Confidence            3455666665533  445778999999877665443    23566799999999999999975443342         34


Q ss_pred             ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494           80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS  159 (340)
Q Consensus        80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~  159 (340)
                      +.+...+.+...+.......+                            .........++  |.|++..+++|+|+..|.
T Consensus       158 ~~~~~dl~~~~~~~~~n~~~~----------------------------~~~~~s~~~~~--~~~~~f~~~~d~~~~~~~  207 (285)
T KOG4210|consen  158 NKGEKDLNTRRGLRPKNKLSR----------------------------LSSGPSDTIFF--VGELDFSLTRDDLKEHFV  207 (285)
T ss_pred             ccccCcccccccccccchhcc----------------------------cccCcccccee--ecccccccchHHHhhhcc
Confidence            444444443322111100000                            00011234444  789999999999999999


Q ss_pred             ccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          160 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       160 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      .+|.|..+++....     .|+ |+|+|.+..++..|+.. +...+++.   ++++.+.+...
T Consensus       208 ~~~~i~~~r~~~~~~s~~~kg~-a~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~  265 (285)
T KOG4210|consen  208 SSGEITSVRLPTDEESGDSKGF-AYVDFSAGNSKKLALND-QTRSIGGR---PLRLEEDEPRP  265 (285)
T ss_pred             CcCcceeeccCCCCCccchhhh-hhhhhhhchhHHHHhhc-ccCcccCc---ccccccCCCCc
Confidence            99999999986533     355 99999999999999988 88889988   89999876654

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=98.18  E-value=3.1e-06  Score=84.97  Aligned_cols=81  Identities=15%  Similarity=0.345  Sum_probs=68.3

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE-cC-----C-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DK-----N-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~-~~-----~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      |.++.  +||.||...|+++.|...|.+||.|..|+|+ ..     . ..-|+||-|.++.+|.+|++.|+|..+++.  
T Consensus       172 P~TTN--lyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~--  247 (877)
T KOG0151|consen  172 PQTTN--LYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY--  247 (877)
T ss_pred             Ccccc--eeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee--
Confidence            44444  5589999999999999999999999999975 21     1 123799999999999999999999999998  


Q ss_pred             cEEEEEeecCCCC
Q 019494          206 CKLHISYSRHTDL  218 (340)
Q Consensus       206 ~~l~v~~ak~~~~  218 (340)
                       .|++.|+|.-.+
T Consensus       248 -e~K~gWgk~V~i  259 (877)
T KOG0151|consen  248 -EMKLGWGKAVPI  259 (877)
T ss_pred             -eeeecccccccc
Confidence             999999986543

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=98.17  E-value=6.2e-06  Score=61.67  Aligned_cols=68  Identities=18%  Similarity=0.300  Sum_probs=47.3

Q ss_pred             ccccCCCCCCC------HHHHHHhhccc-CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            8 SRKYLQWQLSA------SGERAHVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         8 ~~~~l~~~~~~------ee~L~~lF~~f-G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +-||+.|+|++      ..-|++|+..+ |+|.+|.      ++-|.|.|.+.+.|.+|.+.|+|..++         |+
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVf---------G~   67 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVF---------GN   67 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS---------SS
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccc---------cc
Confidence            45788999986      45688999999 5788873      345999999999999999999999965         99


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|.|+|+...
T Consensus        68 kI~v~~~~~~   77 (90)
T PF11608_consen   68 KISVSFSPKN   77 (90)
T ss_dssp             --EEESS--S
T ss_pred             eEEEEEcCCc
Confidence            9999998643

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=98.14  E-value=1.9e-06  Score=76.28  Aligned_cols=70  Identities=19%  Similarity=0.360  Sum_probs=62.9

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      |+|++|++.+.+.+|..+|..||.|..|.+..   || +||+|+|..+|.-|+..||+..|.+.   .+.|.|++..
T Consensus         4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~---gf-~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~~   73 (216)
T KOG0106|consen    4 VYIGRLPYRARERDVERFFKGYGKIPDADMKN---GF-GFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARGK   73 (216)
T ss_pred             eeecccCCccchhHHHHHHhhccccccceeec---cc-ceeccCchhhhhcccchhcCceecce---eeeeeccccc
Confidence            67999999999999999999999999887653   65 99999999999999999999999998   6888887643

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=98.11  E-value=5.2e-07  Score=92.11  Aligned_cols=141  Identities=18%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             ccccccccCCCCCCC--HHHHHHhhcccCceeEEEEe----eecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            4 IWPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTF----EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         4 ~~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~----~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      |+.+..+|++++...  ++||+..|+.+|.+..+.+.    ++.-++.|+|+|.+.++|.+||...++..+         
T Consensus       664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~---------  734 (881)
T KOG0128|consen  664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF---------  734 (881)
T ss_pred             HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh---------
Confidence            455667788887754  78999999999987666433    233456799999999999999965444321         


Q ss_pred             CCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHH
Q 019494           78 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV  157 (340)
Q Consensus        78 ~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~  157 (340)
                       |        +                                                 ..|.|.|.+...|.++|+.+
T Consensus       735 -g--------K-------------------------------------------------~~v~i~g~pf~gt~e~~k~l  756 (881)
T KOG0128|consen  735 -G--------K-------------------------------------------------ISVAISGPPFQGTKEELKSL  756 (881)
T ss_pred             -h--------h-------------------------------------------------hhhheeCCCCCCchHHHHhh
Confidence             1        1                                                 11448899999999999999


Q ss_pred             HcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494          158 FSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH  215 (340)
Q Consensus       158 F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~  215 (340)
                      |+.+|.++.+.+...+    .|. |+|.|.+..+|.+++...++..+...   .+.|..+.+
T Consensus       757 ~~~~gn~~~~~~vt~r~gkpkg~-a~v~y~~ea~~s~~~~s~d~~~~rE~---~~~v~vsnp  814 (881)
T KOG0128|consen  757 ASKTGNVTSLRLVTVRAGKPKGK-ARVDYNTEADASRKVASVDVAGKREN---NGEVQVSNP  814 (881)
T ss_pred             ccccCCccccchhhhhccccccc-eeccCCCcchhhhhcccchhhhhhhc---CccccccCC
Confidence            9999999998765322    454 99999999999999998888777666   677776665

>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]

Probab=98.10  E-value=7.8e-06  Score=76.88  Aligned_cols=180  Identities=15%  Similarity=0.203  Sum_probs=104.1

Q ss_pred             CCCCCCCHHHHHHhhc---cc-CceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494           12 LQWQLSASGERAHVFS---AF-GFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus        12 l~~~~~~ee~L~~lF~---~f-G~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      |++.+++ .|+.++|-   .. |-+..|.++++   +..+-|||.|..+|+|+.|+..-.+.          ++.+-|.+
T Consensus       169 LPfdat~-~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~----------iGqRYIEl  237 (508)
T KOG1365|consen  169 LPFDATA-LDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQN----------IGQRYIEL  237 (508)
T ss_pred             CCCCcch-HHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHH----------HhHHHHHH
Confidence            4666664 88999994   44 35667777663   23345999999999999999754432          23333333


Q ss_pred             eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCC---CCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019494           85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKL---EPESNVLLASIENMQYAVTLDVLHMVFSAF  161 (340)
Q Consensus        85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f  161 (340)
                      -.|+..+...--    +|....+..+.-.       .+.........   .....++.  +.+||++.+.|++.++|..|
T Consensus       238 FRSTaaEvqqvl----nr~~s~pLi~~~~-------sp~~p~~p~~~~p~~~~kdcvR--LRGLPy~AtvEdIL~FlgdF  304 (508)
T KOG1365|consen  238 FRSTAAEVQQVL----NREVSEPLIPGLT-------SPLLPGGPARLVPPTRSKDCVR--LRGLPYEATVEDILDFLGDF  304 (508)
T ss_pred             HHHhHHHHHHHH----HhhccccccCCCC-------CCCCCCCccccCCCCCCCCeeE--ecCCChhhhHHHHHHHHHHH
Confidence            333321110000    0000001110000       00000000000   11234555  78999999999999999988


Q ss_pred             CCeeE---EEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494          162 GPVQK---IAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS  219 (340)
Q Consensus       162 G~v~~---v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~  219 (340)
                      -.-++   |.|.-..    .|. |||+|.+.|+|..|....+++....+   -|.|--+...+++
T Consensus       305 a~~i~f~gVHmv~N~qGrPSGe-AFIqm~nae~a~aaaqk~hk~~mk~R---YiEvfp~S~eeln  365 (508)
T KOG1365|consen  305 ATDIRFQGVHMVLNGQGRPSGE-AFIQMRNAERARAAAQKCHKKLMKSR---YIEVFPCSVEELN  365 (508)
T ss_pred             hhhcccceeEEEEcCCCCcChh-hhhhhhhhHHHHHHHHHHHHhhcccc---eEEEeeccHHHHH
Confidence            74433   3443322    354 99999999999999999998876666   7777655444443

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=98.10  E-value=0.00019  Score=69.81  Aligned_cols=63  Identities=17%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          138 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       138 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      .+|....|++..++.++.+.|+..=.+ .|.|--.    ..| .|+|+|.+.++|..|+.. ++..+..+
T Consensus       282 ~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TG-EAdveF~t~edav~Amsk-d~anm~hr  348 (510)
T KOG4211|consen  282 HFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATG-EADVEFATGEDAVGAMGK-DGANMGHR  348 (510)
T ss_pred             ceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCC-cceeecccchhhHhhhcc-CCcccCcc
Confidence            666688999999999999999875443 5555322    234 499999999999999965 66666665

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=6.1e-05  Score=73.56  Aligned_cols=152  Identities=15%  Similarity=0.176  Sum_probs=96.4

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---------ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN   76 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---------~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~   76 (340)
                      ..+|++.++-+  |+.|...|..||.|.-=---|         +.+.+|+|+.|+++.+...-+.+..-           
T Consensus       260 ~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-----------  328 (520)
T KOG0129|consen  260 RKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-----------  328 (520)
T ss_pred             cceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-----------
Confidence            44688888865  889999999999864211101         12234999999999999888776542           


Q ss_pred             CCCceEEEeeccC--Cc--ccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHH
Q 019494           77 MGPCTLRITYSAH--TD--LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLD  152 (340)
Q Consensus        77 ~~~~~l~v~~s~~--~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~  152 (340)
                       ....+++..+..  ++  ..+.     -|...+.+...               ++.....+.+++|  |+.|+-.++.+
T Consensus       329 -~~~~~yf~vss~~~k~k~VQIr-----PW~laDs~fv~---------------d~sq~lDprrTVF--VGgvprpl~A~  385 (520)
T KOG0129|consen  329 -GEGNYYFKVSSPTIKDKEVQIR-----PWVLADSDFVL---------------DHNQPIDPRRTVF--VGGLPRPLTAE  385 (520)
T ss_pred             -cccceEEEEecCcccccceeEE-----eeEeccchhhh---------------ccCcccCccceEE--ecCCCCcchHH
Confidence             233344433322  11  1111     01000000000               0011112466766  99999999999


Q ss_pred             HHHHHHc-ccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHH
Q 019494          153 VLHMVFS-AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA  194 (340)
Q Consensus       153 ~L~~~F~-~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~  194 (340)
                      +|..+|+ .||.|+.+-|-.+     -+|- |=|.|.+..+=.+||.+
T Consensus       386 eLA~imd~lyGgV~yaGIDtD~k~KYPkGa-GRVtFsnqqsYi~AIsa  432 (520)
T KOG0129|consen  386 ELAMIMEDLFGGVLYVGIDTDPKLKYPKGA-GRVTFSNQQAYIKAISA  432 (520)
T ss_pred             HHHHHHHHhcCceEEEEeccCcccCCCCCc-ceeeecccHHHHHHHhh
Confidence            9999999 7999999988654     1465 88999999888888865

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=98.00  E-value=9.6e-06  Score=79.62  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=58.1

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEEEEee--e--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFE--K--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~--~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ++++.+.++  -.||++||++||+|+-.+++.  +  ....|+||+|.+.++|.++|+.|+-.+         +.|+-|.
T Consensus       408 lWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE---------LHGrmIS  478 (940)
T KOG4661|consen  408 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE---------LHGRMIS  478 (940)
T ss_pred             eeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh---------hcceeee
Confidence            356666644  689999999999998776655  2  246789999999999999999999888         4689999


Q ss_pred             EeeccC
Q 019494           84 ITYSAH   89 (340)
Q Consensus        84 v~~s~~   89 (340)
                      |+.++.
T Consensus       479 VEkaKN  484 (940)
T KOG4661|consen  479 VEKAKN  484 (940)
T ss_pred             eeeccc
Confidence            987764

>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]

Probab=97.91  E-value=2.1e-05  Score=71.10  Aligned_cols=75  Identities=17%  Similarity=0.388  Sum_probs=64.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .+.++  |+|++..+|.+++...|+.||.|.+|.|..++     +|+ +||+|.+.+.+..|++ |||..|.+.   .+.
T Consensus       101 ~~sv~--v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~-~yvef~~~~~~~~ay~-l~gs~i~~~---~i~  173 (231)
T KOG4209|consen  101 APSVW--VGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGF-AYVEFSSYELVEEAYK-LDGSEIPGP---AIE  173 (231)
T ss_pred             CceEE--EeccccccccchhhheeeccCCccceeeeccccCCCccee-EEEecccHhhhHHHhh-cCCcccccc---cce
Confidence            44444  89999999999999999999999988775432     456 9999999999999999 999999999   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |++-+..
T Consensus       174 vt~~r~~  180 (231)
T KOG4209|consen  174 VTLKRTN  180 (231)
T ss_pred             eeeeeee
Confidence            9986654

>KOG0226 consensus RNA-binding proteins [General function prediction only]

Probab=97.91  E-value=1.2e-05  Score=71.88  Aligned_cols=143  Identities=18%  Similarity=0.282  Sum_probs=95.0

Q ss_pred             HHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCc
Q 019494           23 AHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH   99 (340)
Q Consensus        23 ~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~   99 (340)
                      ...|+.+=...+..+.+   ......+|+.|.+...-.++-.+-+++.|         +..++++.-.+.          
T Consensus       117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---------~~~~VR~a~gts----------  177 (290)
T KOG0226|consen  117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKI---------GKPPVRLAAGTS----------  177 (290)
T ss_pred             hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccc---------cCcceeeccccc----------
Confidence            56677776555554443   22334599999888777777766666664         233343332111          


Q ss_pred             CCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----C
Q 019494          100 RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----G  174 (340)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~  174 (340)
                          |..|.+..              |       +.....|+.+.|..+|++|.|...|.+|-...+.++.+++     .
T Consensus       178 ----wedPsl~e--------------w-------~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSk  232 (290)
T KOG0226|consen  178 ----WEDPSLAE--------------W-------DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSK  232 (290)
T ss_pred             ----cCCccccc--------------C-------ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccc
Confidence                11111100              0       0111224478888899999999999999998888876543     4


Q ss_pred             CeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          175 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       175 g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+ +||.|.|.+++..|+..|||..+..+   .|++.-+
T Consensus       233 gy-gfVSf~~pad~~rAmrem~gkyVgsr---piklRkS  267 (290)
T KOG0226|consen  233 GY-GFVSFRDPADYVRAMREMNGKYVGSR---PIKLRKS  267 (290)
T ss_pred             cc-eeeeecCHHHHHHHHHhhcccccccc---hhHhhhh
Confidence            65 99999999999999999999999988   6666543

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=97.91  E-value=3.1e-05  Score=72.11  Aligned_cols=73  Identities=19%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             EEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          138 LLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       138 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      -.|||.|||..||.+++.++|++||.|.+        |++.+.+    +|. |+|.|--+++..-|++.|++..+.|.  
T Consensus       135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGD-aLc~y~K~ESVeLA~~ilDe~~~rg~--  211 (382)
T KOG1548|consen  135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGD-ALCCYIKRESVELAIKILDEDELRGK--  211 (382)
T ss_pred             ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCc-eEEEeecccHHHHHHHHhCcccccCc--
Confidence            34789999999999999999999998864        5566544    356 99999999999999999999999988  


Q ss_pred             cEEEEEeec
Q 019494          206 CKLHISYSR  214 (340)
Q Consensus       206 ~~l~v~~ak  214 (340)
                       .|+|+-|+
T Consensus       212 -~~rVerAk  219 (382)
T KOG1548|consen  212 -KLRVERAK  219 (382)
T ss_pred             -EEEEehhh
Confidence             99999775

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=97.89  E-value=3.3e-05  Score=61.27  Aligned_cols=57  Identities=16%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH  198 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~  198 (340)
                      |.|.++...++.++|+++|+.||.|..|.+.....  .|+|.|.+.++|++|++.+.-.
T Consensus         4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~   60 (105)
T PF08777_consen    4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA   60 (105)
T ss_dssp             EEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred             EEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence            33778999999999999999999999988877554  7999999999999999988765

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=97.83  E-value=2.7e-05  Score=75.91  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...||+.+++.+  +++|+++|..||.|.+..|..+    +...||||+|.+.++++.|+++-   .+.       ++++
T Consensus       288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~-------ig~~  357 (419)
T KOG0116|consen  288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLE-------IGGR  357 (419)
T ss_pred             ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccc-------cCCe
Confidence            344899898865  7889999999999999877653    23378999999999999999764   443       7899


Q ss_pred             eEEEeeccC
Q 019494           81 TLRITYSAH   89 (340)
Q Consensus        81 ~l~v~~s~~   89 (340)
                      +|.|+..+.
T Consensus       358 kl~Veek~~  366 (419)
T KOG0116|consen  358 KLNVEEKRP  366 (419)
T ss_pred             eEEEEeccc
Confidence            999986553

>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]

Probab=97.78  E-value=6.5e-05  Score=68.06  Aligned_cols=73  Identities=14%  Similarity=0.194  Sum_probs=60.5

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+++|.|++.+  ++||++||+.||++..+.+--   +.+.+.|-|.|...++|.+|++.+||..         +.|+.+
T Consensus        84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~---------ldG~~m  154 (243)
T KOG0533|consen   84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA---------LDGRPM  154 (243)
T ss_pred             ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc---------cCCcee
Confidence            45888888865  799999999999888886644   3345679999999999999999999955         679999


Q ss_pred             EEeeccC
Q 019494           83 RITYSAH   89 (340)
Q Consensus        83 ~v~~s~~   89 (340)
                      ++.....
T Consensus       155 k~~~i~~  161 (243)
T KOG0533|consen  155 KIEIISS  161 (243)
T ss_pred             eeEEecC
Confidence            9887553

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=97.72  E-value=3.9e-05  Score=72.12  Aligned_cols=65  Identities=20%  Similarity=0.347  Sum_probs=53.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      +..|+  |++|.+.+|+|.|++.|++||+|.+++++++     ++|| +||+|++.++..+++.. ..+.|+++
T Consensus         6 ~~Klf--iGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgF-gfv~f~~~~~v~~vl~~-~~h~~dgr   75 (311)
T KOG4205|consen    6 SGKLF--IGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGF-GFVTFATPEGVDAVLNA-RTHKLDGR   75 (311)
T ss_pred             Cccee--ecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccc-cceecCCCcchheeecc-cccccCCc
Confidence            45566  9999999999999999999999999998763     4677 99999999888888754 33445555

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=97.64  E-value=0.00011  Score=68.21  Aligned_cols=73  Identities=21%  Similarity=0.332  Sum_probs=60.5

Q ss_pred             EEEeecCCCCCCHHH----H--HHHHcccCCeeEEEEEcCC------CC-eEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          139 LASIENMQYAVTLDV----L--HMVFSAFGPVQKIAMFDKN------GG-LQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       139 ~v~v~nl~~~vt~~~----L--~~~F~~fG~v~~v~i~~~~------~g-~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      +|||-.++..|-.|+    |  .+.|.+||+|.+|++-++.      .+ .-.||.|.+.|+|++|+...+|..++|+  
T Consensus       116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr--  193 (480)
T COG5175         116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR--  193 (480)
T ss_pred             eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc--
Confidence            477888888887666    2  4789999999999986543      11 1249999999999999999999999999  


Q ss_pred             cEEEEEeec
Q 019494          206 CKLHISYSR  214 (340)
Q Consensus       206 ~~l~v~~ak  214 (340)
                       .|+.+|..
T Consensus       194 -~lkatYGT  201 (480)
T COG5175         194 -VLKATYGT  201 (480)
T ss_pred             -eEeeecCc
Confidence             99999985

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=97.58  E-value=8.4e-05  Score=74.92  Aligned_cols=73  Identities=14%  Similarity=0.195  Sum_probs=62.5

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee-------ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE-------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~-------~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ..+|++|+...  |+.|...|.+||.|..|+++-       .....++||.|.+..+|++|+.+|+|+.+         -
T Consensus       175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---------~  245 (877)
T KOG0151|consen  175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---------M  245 (877)
T ss_pred             cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---------e
Confidence            46899999854  899999999999999998874       23456799999999999999999999985         4


Q ss_pred             CceEEEeeccC
Q 019494           79 PCTLRITYSAH   89 (340)
Q Consensus        79 ~~~l~v~~s~~   89 (340)
                      ...+++.|++.
T Consensus       246 ~~e~K~gWgk~  256 (877)
T KOG0151|consen  246 EYEMKLGWGKA  256 (877)
T ss_pred             eeeeeeccccc
Confidence            88889998864

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.58  E-value=0.00014  Score=50.19  Aligned_cols=50  Identities=16%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHH
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK  192 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~  192 (340)
                      |.|.+.+.... +.+...|..||+|+++.+..+..  ..+|+|.++.+|++|+
T Consensus         4 I~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    4 ISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL   53 (53)
T ss_pred             EEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence            44777764544 45666899999999988875443  6999999999999995

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=97.55  E-value=0.00022  Score=55.96  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=49.8

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEE-------------EEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-------------MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC  206 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-------------i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~  206 (340)
                      |+|.+.|.. ....+.+.|++||+|++..             ++... . --.|.|+++.+|.+||.. ||..|.|.  +
T Consensus         9 VtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~-N-Wi~I~Y~~~~~A~rAL~~-NG~i~~g~--~   82 (100)
T PF05172_consen    9 VTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG-N-WIHITYDNPLSAQRALQK-NGTIFSGS--L   82 (100)
T ss_dssp             EEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT-T-EEEEEESSHHHHHHHHTT-TTEEETTC--E
T ss_pred             EEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC-C-EEEEECCCHHHHHHHHHh-CCeEEcCc--E
Confidence            557788766 4567888899999999875             33333 2 589999999999999975 99998876  4


Q ss_pred             EEEEEeecCC
Q 019494          207 KLHISYSRHT  216 (340)
Q Consensus       207 ~l~v~~ak~~  216 (340)
                      .+-|.+.+..
T Consensus        83 mvGV~~~~~~   92 (100)
T PF05172_consen   83 MVGVKPCDPA   92 (100)
T ss_dssp             EEEEEE-HHH
T ss_pred             EEEEEEcHHh
Confidence            5667777543

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]

Probab=97.55  E-value=0.00022  Score=64.08  Aligned_cols=93  Identities=20%  Similarity=0.311  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCC
Q 019494           53 TETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE  132 (340)
Q Consensus        53 ~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (340)
                      ..-|..|..+|++..         .+++.|+|.|+.+..                                         
T Consensus         4 rt~ae~ak~eLd~~~---------~~~~~lr~rfa~~a~-----------------------------------------   33 (275)
T KOG0115|consen    4 RTLAEIAKRELDGRF---------PKGRSLRVRFAMHAE-----------------------------------------   33 (275)
T ss_pred             ccHHHHHHHhcCCCC---------CCCCceEEEeeccce-----------------------------------------
Confidence            345788888999986         579999999987631                                         


Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC---CeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYD  202 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~---g~~afV~F~~~~~A~~A~~~lng~~i~~  202 (340)
                             |+|.||...++.|.|++.|+.||.|.+-++.-+.+   +-.++|+|...-.|.+|+..++---+.+
T Consensus        34 -------l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~   99 (275)
T KOG0115|consen   34 -------LYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG   99 (275)
T ss_pred             -------EEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence                   55889999999999999999999999866543221   1258999999999999999886443433

>KOG0226 consensus RNA-binding proteins [General function prediction only]

Probab=97.51  E-value=4.7e-05  Score=68.20  Aligned_cols=72  Identities=18%  Similarity=0.261  Sum_probs=56.3

Q ss_pred             cccc---CCCCCCCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            8 SRKY---LQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         8 ~~~~---l~~~~~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      .|||   |+|+.+| +.|-..|.+|=.-...++++    .++++|+||.|.|.+++.+|+.+|||+.         ++.+
T Consensus       191 fRIfcgdlgNevnd-~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky---------Vgsr  260 (290)
T KOG0226|consen  191 FRIFCGDLGNEVND-DVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY---------VGSR  260 (290)
T ss_pred             ceeecccccccccH-HHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc---------cccc
Confidence            3555   4666665 78999999997665555554    3578899999999999999999999998         4788


Q ss_pred             eEEEeeccC
Q 019494           81 TLRITYSAH   89 (340)
Q Consensus        81 ~l~v~~s~~   89 (340)
                      +|++..|.-
T Consensus       261 piklRkS~w  269 (290)
T KOG0226|consen  261 PIKLRKSEW  269 (290)
T ss_pred             hhHhhhhhH
Confidence            888776553

>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]

Probab=97.39  E-value=0.00014  Score=69.45  Aligned_cols=69  Identities=23%  Similarity=0.357  Sum_probs=56.1

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCC-----------eEEEEEcCChHHHHHHHHHh
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGG-----------LQALIQYPDVQTAVVAKEAL  195 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g-----------~~afV~F~~~~~A~~A~~~l  195 (340)
                      -++++|+  +.||+.+-.-|-|.+||+.+|.|..|+|..-      .++           .||||+|+..+.|.+|.+.|
T Consensus       229 l~srtiv--aenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~  306 (484)
T KOG1855|consen  229 LPSRTIV--AENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL  306 (484)
T ss_pred             cccceEE--EecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence            3688888  7899999999999999999999999998531      111           27999999999999999999


Q ss_pred             cCCeeCCC
Q 019494          196 EGHCIYDG  203 (340)
Q Consensus       196 ng~~i~~~  203 (340)
                      |...-+-.
T Consensus       307 ~~e~~wr~  314 (484)
T KOG1855|consen  307 NPEQNWRM  314 (484)
T ss_pred             chhhhhhh
Confidence            76554443

>KOG1996 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.38  E-value=0.00026  Score=64.63  Aligned_cols=63  Identities=22%  Similarity=0.334  Sum_probs=52.4

Q ss_pred             HHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           19 SGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      |+++++-|++||+|.+|+|+.-     ...---||+|...++|.+|+-.|||+.         ++|+.++..|.+..
T Consensus       300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy---------FGGr~v~A~Fyn~e  367 (378)
T KOG1996|consen  300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY---------FGGRVVSACFYNLE  367 (378)
T ss_pred             HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce---------ecceeeeheeccHH
Confidence            7788999999999999998861     111128999999999999999999998         47999988886643

>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]

Probab=97.31  E-value=0.0046  Score=58.63  Aligned_cols=147  Identities=17%  Similarity=0.252  Sum_probs=86.3

Q ss_pred             cCCCCCCCHHHHHHhhcccCcee--EEEEe--eecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494           11 YLQWQLSASGERAHVFSAFGFVH--KITTF--EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus        11 ~l~~~~~~ee~L~~lF~~fG~V~--~v~~~--~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      =|+|.++| .++..+|.---.+.  .+.+.  .+.+.+.|.|.|.|.|.-+.|++.-...          +.++.|.|-.
T Consensus        67 glpwq~Sd-~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh----------~g~ryievYk  135 (508)
T KOG1365|consen   67 GLPWQSSD-QDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHH----------MGTRYIEVYK  135 (508)
T ss_pred             CCCCCccc-CCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhh----------ccCCceeeec
Confidence            36888887 78888876442211  11222  2333346999999999999998743322          3566666554


Q ss_pred             ccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc----C
Q 019494           87 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF----G  162 (340)
Q Consensus        87 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f----G  162 (340)
                      +...+. ++.+...+..                        -....+...-+.|-..+||+++++.++.++|...    |
T Consensus       136 a~ge~f-~~iagg~s~e------------------------~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~  190 (508)
T KOG1365|consen  136 ATGEEF-LKIAGGTSNE------------------------AAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTG  190 (508)
T ss_pred             cCchhh-eEecCCcccc------------------------CCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccC
Confidence            443321 1111100000                        0000011122344578999999999999999632    2


Q ss_pred             CeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHH
Q 019494          163 PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEA  194 (340)
Q Consensus       163 ~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~  194 (340)
                      .++.|.++++    -.|. |||.|..+++|+.|+.+
T Consensus       191 g~egvLFV~rpdgrpTGd-AFvlfa~ee~aq~aL~k  225 (508)
T KOG1365|consen  191 GTEGVLFVTRPDGRPTGD-AFVLFACEEDAQFALRK  225 (508)
T ss_pred             CccceEEEECCCCCcccc-eEEEecCHHHHHHHHHH
Confidence            4455554443    1366 99999999999999865

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.20  E-value=0.00054  Score=47.34  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=35.3

Q ss_pred             CCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHH
Q 019494           16 LSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK   60 (340)
Q Consensus        16 ~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai   60 (340)
                      +...++++..|..||+|.++.+-.  .....+|+|.+..+|++|+
T Consensus        11 ~~~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen   11 PDLAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             chHHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence            334567888999999999998763  3457999999999999985

>KOG1996 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.19  E-value=0.00075  Score=61.71  Aligned_cols=64  Identities=14%  Similarity=0.269  Sum_probs=52.6

Q ss_pred             HHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          151 LDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       151 ~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      ++++.+.+++||+|.+|.||...     .-...||+|+..++|.+|+-.|||..+.|+   .++.+|-....
T Consensus       300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr---~v~A~Fyn~ek  368 (378)
T KOG1996|consen  300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR---VVSACFYNLEK  368 (378)
T ss_pred             HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce---eeeheeccHHh
Confidence            45677889999999999987532     122489999999999999999999999998   88888865443

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=97.07  E-value=0.0012  Score=52.41  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=31.9

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCC
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR   66 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~   66 (340)
                      -++|+++|+.||.|.-|.+.++..  -|+|.|.+.++|++|+..+.-.
T Consensus        15 re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~   60 (105)
T PF08777_consen   15 REDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA   60 (105)
T ss_dssp             HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence            689999999999999998876432  4999999999999999977654

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=97.05  E-value=0.0056  Score=47.74  Aligned_cols=74  Identities=22%  Similarity=0.184  Sum_probs=55.0

Q ss_pred             eecCCCCCCHHHHHHHHcc--cCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC-CccEEEEEee
Q 019494          142 IENMQYAVTLDVLHMVFSA--FGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG-GFCKLHISYS  213 (340)
Q Consensus       142 v~nl~~~vt~~~L~~~F~~--fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~-~~~~l~v~~a  213 (340)
                      +.|+|...|.++|.+++..  .|...-+.++-     .+.| +|||.|.+.+.|.+-.+.++|..+... +.....|+||
T Consensus         6 irNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~G-YAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yA   84 (97)
T PF04059_consen    6 IRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLG-YAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYA   84 (97)
T ss_pred             EecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceE-EEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehh
Confidence            8899999999999998865  34444344321     2346 499999999999999999999988532 1236678888


Q ss_pred             cCC
Q 019494          214 RHT  216 (340)
Q Consensus       214 k~~  216 (340)
                      +-.
T Consensus        85 riQ   87 (97)
T PF04059_consen   85 RIQ   87 (97)
T ss_pred             Hhh
Confidence            654

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]

Probab=97.00  E-value=0.0009  Score=66.51  Aligned_cols=88  Identities=25%  Similarity=0.280  Sum_probs=71.1

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      ..++||+  |.||--..|.-+|+.|..+ .|.|+...|-+-+.  .|||.|.+.++|.+...+|||...-..+...|.+.
T Consensus       442 ~~Snvlh--I~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad  517 (718)
T KOG2416|consen  442 EPSNVLH--IDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD  517 (718)
T ss_pred             CccceEe--eecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence            4578888  8899999999999999994 66666654543333  59999999999999999999998876667799999


Q ss_pred             eecCCCCccccCC
Q 019494          212 YSRHTDLSIKVNN  224 (340)
Q Consensus       212 ~ak~~~~~~~~~~  224 (340)
                      |.....+...++.
T Consensus       518 f~~~deld~hr~~  530 (718)
T KOG2416|consen  518 FVRADELDKHRNG  530 (718)
T ss_pred             ecchhHHHHHhcc
Confidence            9988877655443

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=97.00  E-value=0.00037  Score=62.67  Aligned_cols=62  Identities=19%  Similarity=0.286  Sum_probs=50.1

Q ss_pred             HHHHHhhc-ccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCc
Q 019494           20 GERAHVFS-AFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD   91 (340)
Q Consensus        20 e~L~~lF~-~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~   91 (340)
                      |||...|+ +||+|.++.+.+    ...|+ ++|.|...|+|++|+++|||.-         +.|++|...++..++
T Consensus        83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GN-VYV~f~~Ee~ae~a~~~lnnRw---------~~G~pi~ae~~pvT~  149 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNVCDNLGDHLVGN-VYVKFRSEEDAEAALEDLNNRW---------YNGRPIHAELSPVTD  149 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcccchhhhhh-hhhhcccHHHHHHHHHHHcCcc---------ccCCcceeeecCcCc
Confidence            45555566 999999996655    23444 9999999999999999999998         479999999987654

>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]

Probab=96.93  E-value=0.00051  Score=61.75  Aligned_cols=65  Identities=17%  Similarity=0.253  Sum_probs=55.9

Q ss_pred             EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----------CC------eEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494          139 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----------GG------LQALIQYPDVQTAVVAKEALEGHCIYD  202 (340)
Q Consensus       139 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----------~g------~~afV~F~~~~~A~~A~~~lng~~i~~  202 (340)
                      .||++|+|+.+....|++||+.||.|-+|.+-+.+          +|      ..|+|+|.+...|....+.|||..|.|
T Consensus        76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg  155 (278)
T KOG3152|consen   76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG  155 (278)
T ss_pred             EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence            35589999999999999999999999999874311          11      158999999999999999999999999


Q ss_pred             C
Q 019494          203 G  203 (340)
Q Consensus       203 ~  203 (340)
                      +
T Consensus       156 k  156 (278)
T KOG3152|consen  156 K  156 (278)
T ss_pred             C
Confidence            7

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.92  E-value=0.0012  Score=65.24  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=49.3

Q ss_pred             HHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494           20 GERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus        20 e~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      .-|..+|+++|+|+++.+.-   +..+|+.|+||.+..+|+.|++.|||+.+.        +..++.|..
T Consensus        79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--------knHtf~v~~  140 (698)
T KOG2314|consen   79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD--------KNHTFFVRL  140 (698)
T ss_pred             HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec--------ccceEEeeh
Confidence            34678999999999987753   457789999999999999999999999974        677777753

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.88  E-value=0.0017  Score=60.55  Aligned_cols=58  Identities=24%  Similarity=0.407  Sum_probs=47.8

Q ss_pred             HHhhcccCceeEEEEeeec-----CCce--EEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccC
Q 019494           23 AHVFSAFGFVHKITTFEKT-----AGFQ--ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH   89 (340)
Q Consensus        23 ~~lF~~fG~V~~v~~~~~~-----~~~~--AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~   89 (340)
                      .++|.+||+|.+|++.++.     ....  .||+|.+.|+|.+||.+.+|..         +.|+-|+..|...
T Consensus       138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~---------~DGr~lkatYGTT  202 (480)
T COG5175         138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL---------LDGRVLKATYGTT  202 (480)
T ss_pred             hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc---------ccCceEeeecCch
Confidence            4799999999999998742     1111  5999999999999999999987         4699999988653

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=96.79  E-value=0.0069  Score=50.50  Aligned_cols=76  Identities=20%  Similarity=0.304  Sum_probs=53.5

Q ss_pred             CCCcEEEEEeec--CCC-CCCHH----HHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          133 PESNVLLASIEN--MQY-AVTLD----VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       133 ~~s~vl~v~v~n--l~~-~vt~~----~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      |+..++.|++.+  .+. +.-.|    +|.+.|..||+|+=|++...    .-+|.|.+-++|.+|+. ++|.+|.|+  
T Consensus        25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~--   97 (146)
T PF08952_consen   25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGR--   97 (146)
T ss_dssp             -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTE--
T ss_pred             CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCE--
Confidence            456677777766  111 22233    67788999999998887753    48999999999999985 799999998  


Q ss_pred             cEEEEEeecCC
Q 019494          206 CKLHISYSRHT  216 (340)
Q Consensus       206 ~~l~v~~ak~~  216 (340)
                       .|+|++..+.
T Consensus        98 -~l~i~LKtpd  107 (146)
T PF08952_consen   98 -TLKIRLKTPD  107 (146)
T ss_dssp             -EEEEEE----
T ss_pred             -EEEEEeCCcc
Confidence             9999975544

; PDB: 1UFW_A 2DNR_A.

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=96.70  E-value=0.0051  Score=50.78  Aligned_cols=70  Identities=21%  Similarity=0.369  Sum_probs=53.6

Q ss_pred             ccccccCCCCCCC---HHHHHH---hhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA---SGERAH---VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~---ee~L~~---lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      |||-|-+.|+...   .|||++   -.+.||+|.+|...-   +-.|.|.|+|..+|-+|+.++....          .|
T Consensus        85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s~~----------pg  151 (166)
T PF15023_consen   85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQSRA----------PG  151 (166)
T ss_pred             CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcCCC----------CC
Confidence            6777777785532   356554   578899999998763   2349999999999999999999754          58


Q ss_pred             ceEEEeecc
Q 019494           80 CTLRITYSA   88 (340)
Q Consensus        80 ~~l~v~~s~   88 (340)
                      .-++++|-.
T Consensus       152 tm~qCsWqq  160 (166)
T PF15023_consen  152 TMFQCSWQQ  160 (166)
T ss_pred             ceEEeeccc
Confidence            888888743

>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]

Probab=96.68  E-value=0.0025  Score=57.69  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=54.6

Q ss_pred             ccCCCCC---CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494           10 KYLQWQL---SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus        10 ~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +|+++..   +. +++...|+.||.|..|.+..    +..+++|||+|.+.+.+.+|+. |||..|         .++.+
T Consensus       104 v~v~nvd~~~t~-~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---------~~~~i  172 (231)
T KOG4209|consen  104 VWVGNVDFLVTL-TKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---------PGPAI  172 (231)
T ss_pred             EEEecccccccc-chhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---------ccccc
Confidence            4554443   44 45999999999998776554    3467789999999999999998 999985         58888


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      .|.+.+-.
T Consensus       173 ~vt~~r~~  180 (231)
T KOG4209|consen  173 EVTLKRTN  180 (231)
T ss_pred             eeeeeeee
Confidence            88876543

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=96.67  E-value=0.013  Score=60.30  Aligned_cols=6  Identities=17%  Similarity=-0.053  Sum_probs=2.5

Q ss_pred             CCCCCC
Q 019494          274 MMHQPT  279 (340)
Q Consensus       274 ~~~~p~  279 (340)
                      .++.|.
T Consensus       547 pPPlpg  552 (1102)
T KOG1924|consen  547 PPPLPG  552 (1102)
T ss_pred             CCCCCC
Confidence            334444

>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]

Probab=96.67  E-value=0.00098  Score=59.94  Aligned_cols=62  Identities=18%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----------ecCCce------EEEEeCCHHHHHHHHHHhcCCCC
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----------KTAGFQ------ALVQFSDTETASSAKNALDGRSI   68 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----------~~~~~~------AFVeF~~~e~A~~Ai~~lng~~i   68 (340)
                      ++-+||++||..  -.-|++||+.||+|-+|-+-+          +.++++      ++|||.+...|.+..+.|||..|
T Consensus        74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I  153 (278)
T KOG3152|consen   74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI  153 (278)
T ss_pred             ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence            467899999965  678999999999999998865          112222      99999999999999999999997

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=96.62  E-value=0.0019  Score=60.83  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE--------EEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA--------MFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIY  201 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~--------i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~  201 (340)
                      +....|+|.+|+..+++++|.+.|.++|.|.+=+        |.+.     .+|. |.|.|+|..+|+.|++.+++..+.
T Consensus        64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGe-atvS~~D~~~akaai~~~agkdf~  142 (351)
T KOG1995|consen   64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGE-ATVSYEDPPAAKAAIEWFAGKDFC  142 (351)
T ss_pred             cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCc-eeeeecChhhhhhhhhhhcccccc
Confidence            4445566889999999999999999999886432        2221     1354 999999999999999999999999


Q ss_pred             CCCccEEEEEeecCCC
Q 019494          202 DGGFCKLHISYSRHTD  217 (340)
Q Consensus       202 ~~~~~~l~v~~ak~~~  217 (340)
                      +.   +|+|.+++...
T Consensus       143 gn---~ikvs~a~~r~  155 (351)
T KOG1995|consen  143 GN---TIKVSLAERRT  155 (351)
T ss_pred             CC---Cchhhhhhhcc
Confidence            98   99999887655

>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.61  E-value=0.0054  Score=56.46  Aligned_cols=63  Identities=21%  Similarity=0.195  Sum_probs=50.9

Q ss_pred             EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      .-+|+|.+.+ .-....|.++|++||+|++++.. .+.. .-+|.|.++.+|.+||.. ||..|.+.
T Consensus       197 D~WVTVfGFp-pg~~s~vL~~F~~cG~Vvkhv~~-~ngN-wMhirYssr~~A~KALsk-ng~ii~g~  259 (350)
T KOG4285|consen  197 DTWVTVFGFP-PGQVSIVLNLFSRCGEVVKHVTP-SNGN-WMHIRYSSRTHAQKALSK-NGTIIDGD  259 (350)
T ss_pred             cceEEEeccC-ccchhHHHHHHHhhCeeeeeecC-CCCc-eEEEEecchhHHHHhhhh-cCeeeccc
Confidence            4578888886 44556788999999999998776 4434 489999999999999975 89888775

>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]

Probab=96.57  E-value=0.0053  Score=62.22  Aligned_cols=69  Identities=20%  Similarity=0.352  Sum_probs=56.0

Q ss_pred             EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-C----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-N----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      ||.  +.|++.+|+.||+-++|+-|-.+-.-.+.+. .    .|. |.|-|++.++|..|...|++..|.++   +|+|.
T Consensus       869 V~~--~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe-~mvAfes~~eAr~A~~dl~~~~i~nr---~V~l~  942 (944)
T KOG4307|consen  869 VLS--CNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGE-CMVAFESQEEARRASMDLDGQKIRNR---VVSLR  942 (944)
T ss_pred             EEE--ecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccc-eeEeecCHHHHHhhhhccccCcccce---eEEEE
Confidence            666  8899999999999999999975533222221 1    354 99999999999999999999999998   77665

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=96.53  E-value=0.0015  Score=58.81  Aligned_cols=62  Identities=18%  Similarity=0.309  Sum_probs=49.1

Q ss_pred             HHHHHHHc-ccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          152 DVLHMVFS-AFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       152 ~~L~~~F~-~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      |+|+..|+ +||+|+++++=...    .| .++|+|...++|++|++.|||..+.|+   +|.+.|+--++
T Consensus        83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~G-NVYV~f~~Ee~ae~a~~~lnnRw~~G~---pi~ae~~pvT~  149 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNVCDNLGDHLVG-NVYVKFRSEEDAEAALEDLNNRWYNGR---PIHAELSPVTD  149 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcccchhhhh-hhhhhcccHHHHHHHHHHHcCccccCC---cceeeecCcCc
Confidence            44555556 99999998653211    24 399999999999999999999999999   99999886543

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=96.43  E-value=0.002  Score=61.21  Aligned_cols=179  Identities=16%  Similarity=0.186  Sum_probs=101.9

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee--------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK--------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN   76 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~--------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~   76 (340)
                      +.-|.+-|+...  .+.++.||.-.|+|.++.++..        ... .|||.|.|...+..|- .|.+..+        
T Consensus         7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sR-tcyVkf~d~~sv~vaQ-hLtntvf--------   76 (479)
T KOG4676|consen    7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISR-TCYVKFLDSQSVTVAQ-HLTNTVF--------   76 (479)
T ss_pred             CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceee-eEEEeccCCcceeHHh-hhcccee--------
Confidence            334555566543  6789999999999999988861        123 4999999999999887 4666653        


Q ss_pred             CCCceEEEe-eccCCcccc--cccCcCCcCC----CCC--CCCCC-CC-ccCcC-CC----ccc--cCCCCCCCCCCcEE
Q 019494           77 MGPCTLRIT-YSAHTDLSV--KFQSHRSRDY----TNP--YLPVA-PS-AIDAS-GQ----LSV--GLDGKKLEPESNVL  138 (340)
Q Consensus        77 ~~~~~l~v~-~s~~~~l~~--~~~~~~~~~~----~~~--~~~~~-~~-~~~~~-~~----~~~--~~~~~~~~~~s~vl  138 (340)
                       -++.|.|- |.... +..  .++....-..    -.+  .|+.. .. ...+. .+    +.+  ..+....+.-..++
T Consensus        77 -vdraliv~p~~~~~-~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~  154 (479)
T KOG4676|consen   77 -VDRALIVRPYGDEV-IPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTR  154 (479)
T ss_pred             -eeeeEEEEecCCCC-CccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhh
Confidence             25555443 32211 000  0000000000    000  00000 00 00000 00    000  00111111113444


Q ss_pred             EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494          139 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI  200 (340)
Q Consensus       139 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i  200 (340)
                      .  |.+|...+..+++-++|..+|+|....+-.+....+|-|+|....+...|+.. +|..+
T Consensus       155 ~--v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~  213 (479)
T KOG4676|consen  155 E--VQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRER  213 (479)
T ss_pred             h--hhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhh
Confidence            4  88999999999999999999999887765554444678999999999999875 55443

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=96.40  E-value=0.02  Score=44.68  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=49.8

Q ss_pred             cCCCCCCCHHHHHHhhccc--CceeEEEE----eeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494           11 YLQWQLSASGERAHVFSAF--GFVHKITT----FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus        11 ~l~~~~~~ee~L~~lF~~f--G~V~~v~~----~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      .||+.-+. ++|.+++...  |...=+-+    ..+.+.|||||.|.+.++|.+-.+.++|+...     .....|...|
T Consensus         8 NIPn~~t~-~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~-----~~~s~Kvc~i   81 (97)
T PF04059_consen    8 NIPNKYTQ-EMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP-----NFNSKKVCEI   81 (97)
T ss_pred             cCCCCCCH-HHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc-----cCCCCcEEEE
Confidence            45555554 6777666554  44322211    12457789999999999999999999998842     2234667788


Q ss_pred             eeccCC
Q 019494           85 TYSAHT   90 (340)
Q Consensus        85 ~~s~~~   90 (340)
                      .||+-.
T Consensus        82 ~yAriQ   87 (97)
T PF04059_consen   82 SYARIQ   87 (97)
T ss_pred             ehhHhh
Confidence            888743

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=96.40  E-value=0.016  Score=47.96  Aligned_cols=75  Identities=23%  Similarity=0.398  Sum_probs=52.2

Q ss_pred             CCCCcEEEEEe--ecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          132 EPESNVLLASI--ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       132 ~~~s~vl~v~v--~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++-.++.|.=  .|+...-+...+..-.+.||.|.+|.+..+.   .|.|.|.|..+|.+|+.+.+. ..-|.   .++
T Consensus        83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgt---m~q  155 (166)
T PF15023_consen   83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGT---MFQ  155 (166)
T ss_pred             CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCc---eEE
Confidence            44545555221  3454333333455567889999999877554   599999999999999999887 44555   788


Q ss_pred             EEee
Q 019494          210 ISYS  213 (340)
Q Consensus       210 v~~a  213 (340)
                      ++|.
T Consensus       156 CsWq  159 (166)
T PF15023_consen  156 CSWQ  159 (166)
T ss_pred             eecc
Confidence            8874

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=96.37  E-value=0.0097  Score=51.97  Aligned_cols=65  Identities=17%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc--CCeeCCCCccEEEEEeecCCCC
Q 019494          149 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       149 vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln--g~~i~~~~~~~l~v~~ak~~~~  218 (340)
                      -..+.|+++|..|+.+.....+++=+  ...|.|.+.++|.+|+..|+  ++.+.+.   .|+|-|+.....
T Consensus         7 ~~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~~~~~   73 (184)
T PF04847_consen    7 DNLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQPTPI   73 (184)
T ss_dssp             --HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE----SS-
T ss_pred             hhHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEcccccc
Confidence            35688999999999999998887665  59999999999999999999  9999998   999999965544

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.37  E-value=0.0059  Score=60.58  Aligned_cols=72  Identities=19%  Similarity=0.326  Sum_probs=54.6

Q ss_pred             CcEEEEEeecCCCCCCHH-------HHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          135 SNVLLASIENMQYAVTLD-------VLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~-------~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      .++++  |.|.| -|..+       .|..+|+++|+|+++.++..    ..|+ .|++|++..+|..|++.|||+.|+-+
T Consensus        58 D~vVv--v~g~P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~-lf~E~~~~~~A~~aVK~l~G~~ldkn  133 (698)
T KOG2314|consen   58 DSVVV--VDGAP-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGY-LFVEYASMRDAKKAVKSLNGKRLDKN  133 (698)
T ss_pred             ceEEE--ECCCc-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeE-EEEEecChhhHHHHHHhcccceeccc
Confidence            34555  77886 34333       35678999999999988632    2354 99999999999999999999999876


Q ss_pred             CccEEEEEe
Q 019494          204 GFCKLHISY  212 (340)
Q Consensus       204 ~~~~l~v~~  212 (340)
                        +++.|..
T Consensus       134 --Htf~v~~  140 (698)
T KOG2314|consen  134 --HTFFVRL  140 (698)
T ss_pred             --ceEEeeh
Confidence              4666653

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=96.36  E-value=0.0091  Score=49.76  Aligned_cols=57  Identities=26%  Similarity=0.318  Sum_probs=44.8

Q ss_pred             HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      ++|.+.|+.||+|.=|++..    ..-+|+|.+-++|.+|+ .|+|..|         .|+.|+|+.....
T Consensus        51 ~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaal-s~dg~~v---------~g~~l~i~LKtpd  107 (146)
T PF08952_consen   51 DELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAAL-SLDGIQV---------NGRTLKIRLKTPD  107 (146)
T ss_dssp             HHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHH-HGCCSEE---------TTEEEEEEE----
T ss_pred             HHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHH-ccCCcEE---------CCEEEEEEeCCcc
Confidence            47888999999988887764    24999999999999999 6999985         7999999976544

; PDB: 1UFW_A 2DNR_A.

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=96.15  E-value=0.11  Score=49.03  Aligned_cols=58  Identities=16%  Similarity=0.203  Sum_probs=43.6

Q ss_pred             ccCCCCC---CCHHHHHHhhcccC--ceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494           10 KYLQWQL---SASGERAHVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSI   68 (340)
Q Consensus        10 ~~l~~~~---~~ee~L~~lF~~fG--~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i   68 (340)
                      +||+|+.   +| +||.+....-|  .|.++++++    +.+|+||+|...+..+.++-++.|--++|
T Consensus        83 ~YvGNL~W~TTD-~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i  149 (498)
T KOG4849|consen   83 CYVGNLLWYTTD-ADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI  149 (498)
T ss_pred             EEecceeEEecc-HHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence            3666554   55 67777666666  467777776    35788999999999999999988877775

>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]

Probab=96.00  E-value=0.0052  Score=59.08  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             HHHHHhhcccCceeEEEEeee----------c-------CCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494           20 GERAHVFSAFGFVHKITTFEK----------T-------AGFQALVQFSDTETASSAKNALDGRSIP   69 (340)
Q Consensus        20 e~L~~lF~~fG~V~~v~~~~~----------~-------~~~~AFVeF~~~e~A~~Ai~~lng~~i~   69 (340)
                      |.|.+||+.+|.|..|+|.+-          .       .+-+|||||...+.|.+|.+.|+...-|
T Consensus       246 enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~w  312 (484)
T KOG1855|consen  246 ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNW  312 (484)
T ss_pred             HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhh
Confidence            789999999999999999761          1       1334999999999999999999876666

>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]

Probab=95.81  E-value=0.28  Score=50.25  Aligned_cols=70  Identities=14%  Similarity=0.232  Sum_probs=53.5

Q ss_pred             eecCCCCCCHHHHHHHHcccCCee-EEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          142 IENMQYAVTLDVLHMVFSAFGPVQ-KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       142 v~nl~~~vt~~~L~~~F~~fG~v~-~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      +.||+.....-|++.+|+---.-. -|.|+-..-|. |||-|.+-|+|.-|+.+ ++..|.+.   .+++-+|...
T Consensus         7 LqnLP~tAga~DIR~FFSGL~IPdGgVHIIGGe~Ge-aFI~FsTDeDARlaM~k-dr~~i~g~---~VrLlLSSks   77 (944)
T KOG4307|consen    7 LQNLPMTAGASDIRTFFSGLKIPDGGVHIIGGEEGE-AFIGFSTDEDARLAMTK-DRLMIHGA---EVRLLLSSKS   77 (944)
T ss_pred             ecCCcccccchHHHHhhcccccCCCceEEecccccc-eEEEecccchhhhhhhh-cccceecc---eEEEEeccHH
Confidence            679999999999999998642111 13455555565 99999999999999976 66678887   8888887544

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=95.60  E-value=0.019  Score=50.17  Aligned_cols=63  Identities=22%  Similarity=0.334  Sum_probs=46.1

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc--CCCCCccCCCCCCCCceEEEeeccCCcc
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPENMGPCTLRITYSAHTDL   92 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln--g~~i~~~~~~~~~~~~~l~v~~s~~~~l   92 (340)
                      .+.|+++|+.|+.+..+..+++-+  -..|.|.+.++|.+|+..|+  +..+         .|..++|.|++....
T Consensus         9 ~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~---------~g~~l~~yf~~~~~~   73 (184)
T PF04847_consen    9 LAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSF---------NGKRLRVYFGQPTPI   73 (184)
T ss_dssp             HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEE---------TTEE-EEE----SS-
T ss_pred             HHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhccccccc---------CCCceEEEEcccccc
Confidence            578999999999999998887432  39999999999999999999  7764         688899999865433

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=95.55  E-value=0.00074  Score=69.69  Aligned_cols=136  Identities=16%  Similarity=0.161  Sum_probs=91.6

Q ss_pred             HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcc--
Q 019494           19 SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDL--   92 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l--   92 (340)
                      .+.++..|..+|.|.+|.+-++    ....++++++....+|+.|... .+..         +.++.+.+..+.....  
T Consensus       586 ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~---------~a~~~~av~~ad~~~~~~  655 (881)
T KOG0128|consen  586 KEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGA---------LANRSAAVGLADAEEKEE  655 (881)
T ss_pred             HHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccc---------cCCccccCCCCCchhhhh
Confidence            3466889999999999988762    2333688999999999988853 3333         3566666665553321  


Q ss_pred             cccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE--
Q 019494           93 SVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF--  170 (340)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~--  170 (340)
                      ..+...+..|                               ....  ++|.||+..+.+++|+..|+.+|.+..|.+.  
T Consensus       656 ~~kvs~n~~R-------------------------------~~~~--~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h  702 (881)
T KOG0128|consen  656 NFKVSPNEIR-------------------------------DLIK--IFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIH  702 (881)
T ss_pred             ccCcCchHHH-------------------------------HHHH--HHHhhcchhhcCchhhhhcCccchhhhHHHHHH
Confidence            1000000000                               0122  3488999999999999999999987766543  


Q ss_pred             --cC-CCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494          171 --DK-NGGLQALIQYPDVQTAVVAKEALEGH  198 (340)
Q Consensus       171 --~~-~~g~~afV~F~~~~~A~~A~~~lng~  198 (340)
                        ++ -+|. |+|+|.+.++|.+|+....+.
T Consensus       703 ~n~~~~rG~-~Y~~F~~~~~~~aaV~f~d~~  732 (881)
T KOG0128|consen  703 KNEKRFRGK-AYVEFLKPEHAGAAVAFRDSC  732 (881)
T ss_pred             hhccccccc-eeeEeecCCchhhhhhhhhhh
Confidence              11 2564 999999999999999876554

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=95.51  E-value=0.016  Score=55.15  Aligned_cols=72  Identities=17%  Similarity=0.359  Sum_probs=53.8

Q ss_pred             EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC-------CeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-------GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~-------g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ||.  |.|+....|.|+++.||..-|+|..+.++..-+       ...|||.|.|..++..|-...| +.+-+.  ..|.
T Consensus         9 vIq--vanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn-tvfvdr--aliv   83 (479)
T KOG4676|consen    9 VIQ--VANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN-TVFVDR--ALIV   83 (479)
T ss_pred             eee--ecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc-ceeeee--eEEE
Confidence            666  889999999999999999999999999875211       1269999999999999865544 444443  1444


Q ss_pred             EEee
Q 019494          210 ISYS  213 (340)
Q Consensus       210 v~~a  213 (340)
                      +-|.
T Consensus        84 ~p~~   87 (479)
T KOG4676|consen   84 RPYG   87 (479)
T ss_pred             EecC
Confidence            4444

>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]

Probab=95.46  E-value=0.0096  Score=61.67  Aligned_cols=62  Identities=29%  Similarity=0.367  Sum_probs=55.2

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccC
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH   89 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~   89 (340)
                      ..-|..||+.||+|.+++.++.  -..|.|+|.+.|.|..|+++|+|+++.       ..|-+.+|.|++.
T Consensus       312 SssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs-------~~g~Ps~V~~ak~  373 (1007)
T KOG4574|consen  312 SSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVS-------VTGAPSRVSFAKT  373 (1007)
T ss_pred             HHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCccc-------ccCCceeEEeccc
Confidence            5789999999999999998874  346999999999999999999999986       6788899999873

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=95.21  E-value=0.044  Score=41.23  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=36.3

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG   65 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng   65 (340)
                      ..||.+||+.||.|.---+..    ..|||...+.+.|..|++.++-
T Consensus        22 ~~DI~qlFspfG~I~VsWi~d----TSAfV~l~~r~~~~~v~~~~~~   64 (87)
T PF08675_consen   22 TSDIYQLFSPFGQIYVSWIND----TSAFVALHNRDQAKVVMNTLKK   64 (87)
T ss_dssp             HHHHHHHCCCCCCEEEEEECT----TEEEEEECCCHHHHHHHHHHTT
T ss_pred             hhhHHHHhccCCcEEEEEEcC----CcEEEEeecHHHHHHHHHHhcc
Confidence            589999999999987666533    2499999999999999998874

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=95.20  E-value=0.084  Score=37.54  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=40.8

Q ss_pred             EeecCCCCCCHHHHHHHHccc---CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHh
Q 019494          141 SIENMQYAVTLDVLHMVFSAF---GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL  195 (340)
Q Consensus       141 ~v~nl~~~vt~~~L~~~F~~f---G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~l  195 (340)
                      .|.++ .+++.++++..|..|   ....+|.-..+.   .|=|.|.|.+.|.+|+.+|
T Consensus         9 hirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L   62 (62)
T PF10309_consen    9 HIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL   62 (62)
T ss_pred             EEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence            37787 478999999999999   235677756555   4999999999999999875

>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]

Probab=95.19  E-value=0.013  Score=60.61  Aligned_cols=73  Identities=22%  Similarity=0.320  Sum_probs=60.7

Q ss_pred             eecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       142 v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      +.|..-+.+-..|..+|+.||.|.....++.-.  .|.|+|.+.++|..|+++|+|.++.-- .-+.+|.|||.-.
T Consensus       303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~~  375 (1007)
T KOG4574|consen  303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTLP  375 (1007)
T ss_pred             hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEeccccc
Confidence            455556777888999999999999999887655  699999999999999999999987532 1289999998654

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=94.96  E-value=0.06  Score=42.22  Aligned_cols=54  Identities=20%  Similarity=0.272  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHhhcccCceeEEEEe-e----------ecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494           14 WQLSASGERAHVFSAFGFVHKITTF-E----------KTAGFQALVQFSDTETASSAKNALDGRSI   68 (340)
Q Consensus        14 ~~~~~ee~L~~lF~~fG~V~~v~~~-~----------~~~~~~AFVeF~~~e~A~~Ai~~lng~~i   68 (340)
                      +-+.....+.+.|++||+|.+..-. +          -..++.--|+|.+..+|.+||. -||+.|
T Consensus        14 fp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~   78 (100)
T PF05172_consen   14 FPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF   78 (100)
T ss_dssp             --GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE
T ss_pred             cCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE
Confidence            3334457788999999999888500 0          1255679999999999999995 588875

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]

Probab=94.38  E-value=0.04  Score=53.09  Aligned_cols=73  Identities=26%  Similarity=0.213  Sum_probs=56.8

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC-eeCCCCccEEEEEeecCCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH-CIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~-~i~~~~~~~l~v~~ak~~~  217 (340)
                      +|++||.+.++.++|+.+|...-.-..-.++-+. | ++||.+.|..-|.+|++.++|. ++.|+   ++.+.++-++.
T Consensus         4 lyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-g-yafvd~pdq~wa~kaie~~sgk~elqGk---r~e~~~sv~kk   77 (584)
T KOG2193|consen    4 LYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-G-YAFVDCPDQQWANKAIETLSGKVELQGK---RQEVEHSVPKK   77 (584)
T ss_pred             ccccccCCCCChHHHHHHhccccCCCCcceeeec-c-eeeccCCchhhhhhhHHhhchhhhhcCc---eeeccchhhHH
Confidence            5589999999999999999875211111233344 4 6999999999999999999998 57787   99999886554

>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.15  E-value=0.12  Score=47.88  Aligned_cols=52  Identities=23%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494           14 WQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI   68 (340)
Q Consensus        14 ~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i   68 (340)
                      +-+.+-.-|.++|++||+|++++.-  .++++-.|.|.+..+|++||. .||+.|
T Consensus       205 Fppg~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii  256 (350)
T KOG4285|consen  205 FPPGQVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTII  256 (350)
T ss_pred             cCccchhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeee
Confidence            3344445677899999999999865  467889999999999999996 588765

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=94.12  E-value=0.21  Score=39.86  Aligned_cols=59  Identities=15%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             cCCCCCCCHHHHHHhhcccC-ceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494           11 YLQWQLSASGERAHVFSAFG-FVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIP   69 (340)
Q Consensus        11 ~l~~~~~~ee~L~~lF~~fG-~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~   69 (340)
                      .++.-.+.-++|..+.+.+= .|..+++++.  .+...+++.|++.++|+.-.+.+||+.+-
T Consensus        19 ~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn   80 (110)
T PF07576_consen   19 AVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN   80 (110)
T ss_pred             EeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence            33333344578888888884 4667777773  35556999999999999999999999863

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=93.88  E-value=0.23  Score=37.40  Aligned_cols=56  Identities=16%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG  197 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng  197 (340)
                      ..|++|+   .|.+.-..||.++|+.||.|. |.-..+.   .|||-..+++.|..|+..+..
T Consensus         9 dHVFhlt---FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~   64 (87)
T PF08675_consen    9 DHVFHLT---FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK   64 (87)
T ss_dssp             CCEEEEE-----TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred             ceEEEEe---CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence            3556633   677888999999999999976 3333332   599999999999999999874

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>KOG2068 consensus MOT2 transcription factor [Transcription]

Probab=93.62  E-value=0.037  Score=51.95  Aligned_cols=66  Identities=17%  Similarity=0.294  Sum_probs=50.7

Q ss_pred             CCCHHHHH--HhhcccCceeEEEEeeec-----CCc--eEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494           16 LSASGERA--HVFSAFGFVHKITTFEKT-----AGF--QALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus        16 ~~~ee~L~--~lF~~fG~V~~v~~~~~~-----~~~--~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      ..+|+.|+  +.|.+||.|.+|++.++.     .++  -++|+|...|+|..||...+|..         ..++.|+..|
T Consensus        89 ~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~---------~dg~~lka~~  159 (327)
T KOG2068|consen   89 LADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV---------DDGRALKASL  159 (327)
T ss_pred             ccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH---------hhhhhhHHhh
Confidence            35677776  589999999999887732     111  29999999999999999999987         3577777777


Q ss_pred             ccCC
Q 019494           87 SAHT   90 (340)
Q Consensus        87 s~~~   90 (340)
                      ...+
T Consensus       160 gttk  163 (327)
T KOG2068|consen  160 GTTK  163 (327)
T ss_pred             CCCc
Confidence            5543

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=93.59  E-value=0.32  Score=35.11  Aligned_cols=57  Identities=18%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             ccccCCCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494            8 SRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIP   69 (340)
Q Consensus         8 ~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~   69 (340)
                      +..|++...++-+|++..+..|+- .+|+.-  ..|  =||.|.|.++|+++.+..+|+.++
T Consensus         3 ~~~~vp~~~~~v~d~K~~Lr~y~~-~~I~~d--~tG--fYIvF~~~~Ea~rC~~~~~~~~~f   59 (66)
T PF11767_consen    3 SHKFVPVHGVTVEDFKKRLRKYRW-DRIRDD--RTG--FYIVFNDSKEAERCFRAEDGTLFF   59 (66)
T ss_pred             CcccCCCCCccHHHHHHHHhcCCc-ceEEec--CCE--EEEEECChHHHHHHHHhcCCCEEE
Confidence            456888888888999999999976 555543  245  699999999999999999998764

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=93.47  E-value=0.11  Score=54.55  Aligned_cols=74  Identities=19%  Similarity=0.207  Sum_probs=59.7

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ++.|++++.+...  .+-|...|..||.|.+|.+-+  ...||+|.|.+...|+.|++.|-|..|.       ...+.++
T Consensus       454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G-------~P~~r~r  524 (975)
T KOG0112|consen  454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLG-------GPPRRLR  524 (975)
T ss_pred             cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCC-------CCCcccc
Confidence            4567777655543  567889999999999998765  3457999999999999999999999875       3557789


Q ss_pred             Eeecc
Q 019494           84 ITYSA   88 (340)
Q Consensus        84 v~~s~   88 (340)
                      |.|+.
T Consensus       525 vdla~  529 (975)
T KOG0112|consen  525 VDLAS  529 (975)
T ss_pred             ccccc
Confidence            98876

>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]

Probab=93.46  E-value=0.049  Score=50.95  Aligned_cols=69  Identities=19%  Similarity=0.122  Sum_probs=54.7

Q ss_pred             CCCCC--CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494           12 LQWQL--SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus        12 l~~~~--~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      +++..  .++++|+..|..+|.|++|++..    ...+++|+|+|.+...+..|+.. +...         +.++++.+.
T Consensus       190 ~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~  259 (285)
T KOG4210|consen  190 VGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRS---------IGGRPLRLE  259 (285)
T ss_pred             ecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCc---------ccCcccccc
Confidence            44444  34789999999999999998876    23566799999999999999986 6665         468889998


Q ss_pred             eccCC
Q 019494           86 YSAHT   90 (340)
Q Consensus        86 ~s~~~   90 (340)
                      +....
T Consensus       260 ~~~~~  264 (285)
T KOG4210|consen  260 EDEPR  264 (285)
T ss_pred             cCCCC
Confidence            87643

>KOG2068 consensus MOT2 transcription factor [Transcription]

Probab=93.05  E-value=0.037  Score=51.92  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=55.5

Q ss_pred             EEEeecCCCCCC-HHHHH--HHHcccCCeeEEEEEcCC------C-CeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          139 LASIENMQYAVT-LDVLH--MVFSAFGPVQKIAMFDKN------G-GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       139 ~v~v~nl~~~vt-~~~L~--~~F~~fG~v~~v~i~~~~------~-g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      +|+|-.|+..+- ++.|+  +.|.+||.|.+|.+.++.      . +..++|.|+..|+|..||...+|....++   .|
T Consensus        79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~---~l  155 (327)
T KOG2068|consen   79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR---AL  155 (327)
T ss_pred             hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh---hh
Confidence            355556655554 33444  579999999999987643      1 12489999999999999999999999998   77


Q ss_pred             EEEeecC
Q 019494          209 HISYSRH  215 (340)
Q Consensus       209 ~v~~ak~  215 (340)
                      +.+|...
T Consensus       156 ka~~gtt  162 (327)
T KOG2068|consen  156 KASLGTT  162 (327)
T ss_pred             HHhhCCC
Confidence            7777643

>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]

Probab=93.04  E-value=0.051  Score=54.48  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             cccccCCCCCC--CHHHHHHhhc-ccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFS-AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~-~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +.-|||.++..  ++..|+.|.. ..|.|.+..|.+-+  ..|||.|.+.++|...+.+|||..-.      ..+.+-|.
T Consensus       444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP------~sNPK~L~  515 (718)
T KOG2416|consen  444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWP------PSNPKHLI  515 (718)
T ss_pred             cceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccC------CCCCceeE
Confidence            34457777763  5899999998 45677777554422  24999999999999999999997632      35678899


Q ss_pred             EeeccCCccc
Q 019494           84 ITYSAHTDLS   93 (340)
Q Consensus        84 v~~s~~~~l~   93 (340)
                      +.|....++.
T Consensus       516 adf~~~deld  525 (718)
T KOG2416|consen  516 ADFVRADELD  525 (718)
T ss_pred             eeecchhHHH
Confidence            9998766554

>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]

Probab=92.16  E-value=0.64  Score=46.54  Aligned_cols=62  Identities=13%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcc--cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSA--FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG  197 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~--fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng  197 (340)
                      +..+...|.+.-++++..+|+++.||+.  +-+++.|.+-..+   .-||.|++.++|++|.+.|.-
T Consensus       171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylre  234 (684)
T KOG2591|consen  171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLRE  234 (684)
T ss_pred             cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHH
Confidence            3344444557899999999999999965  7788888776544   389999999999999887763

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=92.03  E-value=0.41  Score=41.54  Aligned_cols=79  Identities=14%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             EEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEc----CC---CC--eEEEEEcCChHHHHHHHHHhcCCeeCCC-C-cc
Q 019494          139 LASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFD----KN---GG--LQALIQYPDVQTAVVAKEALEGHCIYDG-G-FC  206 (340)
Q Consensus       139 ~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~----~~---~g--~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~  206 (340)
                      .|.|.+||+++|++++.+.++. ++.......+.    ..   ..  ..|+|.|.+.++...-.+.++|+.+.+. | ..
T Consensus         9 KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~   88 (176)
T PF03467_consen    9 KVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEY   88 (176)
T ss_dssp             EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EE
T ss_pred             eEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCc
Confidence            3458999999999999998887 77662222211    11   00  1499999999999999999999876543 2 34


Q ss_pred             EEEEEeecCCC
Q 019494          207 KLHISYSRHTD  217 (340)
Q Consensus       207 ~l~v~~ak~~~  217 (340)
                      ...|.||--..
T Consensus        89 ~~~VE~Apyqk   99 (176)
T PF03467_consen   89 PAVVEFAPYQK   99 (176)
T ss_dssp             EEEEEE-SS--
T ss_pred             ceeEEEcchhc
Confidence            66788875543

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=91.39  E-value=0.69  Score=33.34  Aligned_cols=51  Identities=20%  Similarity=0.249  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          148 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       148 ~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      .++.++++..+.+|+- .+|  ...+.|  =||.|.|.++|.++....+|..++.-
T Consensus        11 ~~~v~d~K~~Lr~y~~-~~I--~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~y   61 (66)
T PF11767_consen   11 GVTVEDFKKRLRKYRW-DRI--RDDRTG--FYIVFNDSKEAERCFRAEDGTLFFTY   61 (66)
T ss_pred             CccHHHHHHHHhcCCc-ceE--EecCCE--EEEEECChHHHHHHHHhcCCCEEEEE
Confidence            6789999999999974 333  334445  38999999999999999999988775

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins []

Probab=91.13  E-value=1.3  Score=32.56  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=39.9

Q ss_pred             EEEEEeecCCCCCCHHHHHHHHcccCC-----eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          137 VLLASIENMQYAVTLDVLHMVFSAFGP-----VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       137 vl~v~v~nl~~~vt~~~L~~~F~~fG~-----v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      .|+|.++.. ..++..+|..++..-+.     |-+|.|..+    ++||+-... .|..+++.|++..+.|+   .|+|+
T Consensus         2 rl~in~Gr~-dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk---~v~ve   72 (74)
T PF03880_consen    2 RLFINVGRK-DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGK---KVRVE   72 (74)
T ss_dssp             EEEES-SGG-GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS-------EE
T ss_pred             EEEEEcccc-cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCe---eEEEE
Confidence            356555554 58888888888887754     445556543    599987654 89999999999999999   88887


Q ss_pred             ee
Q 019494          212 YS  213 (340)
Q Consensus       212 ~a  213 (340)
                      .|
T Consensus        73 ~A   74 (74)
T PF03880_consen   73 RA   74 (74)
T ss_dssp             E-
T ss_pred             EC
Confidence            53

; PDB: 2G0C_A 3MOJ_B.

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=90.98  E-value=0.26  Score=46.73  Aligned_cols=73  Identities=15%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             cccCCCCC--CCHHHHHHhhcccCceeE--------EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCC
Q 019494            9 RKYLQWQL--SASGERAHVFSAFGFVHK--------ITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP   74 (340)
Q Consensus         9 ~~~l~~~~--~~ee~L~~lF~~fG~V~~--------v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~   74 (340)
                      -+|+-.++  +++.+|.++|.++|.|..        |.+.+    ...|+-|.|.|.|.-.|+.||+-++++.+      
T Consensus        68 ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf------  141 (351)
T KOG1995|consen   68 TIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF------  141 (351)
T ss_pred             cceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc------
Confidence            44554444  347889999999998842        22222    23455699999999999999999999995      


Q ss_pred             CCCCCceEEEeeccCC
Q 019494           75 ENMGPCTLRITYSAHT   90 (340)
Q Consensus        75 ~~~~~~~l~v~~s~~~   90 (340)
                         .+.+|+|.++..+
T Consensus       142 ---~gn~ikvs~a~~r  154 (351)
T KOG1995|consen  142 ---CGNTIKVSLAERR  154 (351)
T ss_pred             ---cCCCchhhhhhhc
Confidence               5689999887644

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=90.56  E-value=2.3  Score=33.98  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=47.4

Q ss_pred             eecCCCCCCHHHHHHHHcccC-CeeEEEEEcCCC--CeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494          142 IENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYD  202 (340)
Q Consensus       142 v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~~~--g~~afV~F~~~~~A~~A~~~lng~~i~~  202 (340)
                      +...++-++.++|..+.+.+- .|..++|.++..  .+.++++|.|.++|.+=.+..||..+..
T Consensus        18 l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns   81 (110)
T PF07576_consen   18 LAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS   81 (110)
T ss_pred             EEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence            567777888888887777765 455667776542  3569999999999999999999997643

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=89.51  E-value=5.6  Score=35.88  Aligned_cols=7  Identities=43%  Similarity=0.766  Sum_probs=2.7

Q ss_pred             CCCCCCC
Q 019494          297 GNHPYMP  303 (340)
Q Consensus       297 ~~~~~~p  303 (340)
                      .++-|||
T Consensus       170 ~pgv~mp  176 (341)
T KOG2893|consen  170 APGVYMP  176 (341)
T ss_pred             CCccccC
Confidence            3333443

>KOG2318 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.65  E-value=2.2  Score=43.10  Aligned_cols=77  Identities=21%  Similarity=0.362  Sum_probs=59.7

Q ss_pred             CCcEEEEEeecCCC-CCCHHHHHHHHccc----CCeeEEEEEcC--------------C---------------------
Q 019494          134 ESNVLLASIENMQY-AVTLDVLHMVFSAF----GPVQKIAMFDK--------------N---------------------  173 (340)
Q Consensus       134 ~s~vl~v~v~nl~~-~vt~~~L~~~F~~f----G~v~~v~i~~~--------------~---------------------  173 (340)
                      .++.|.  |-||++ .|..++|..+|+.|    |.|.+|.|.+.              .                     
T Consensus       173 ~T~RLA--VvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~  250 (650)
T KOG2318|consen  173 ETKRLA--VVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE  250 (650)
T ss_pred             ccceee--EeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence            466677  668875 78999999998775    59999998421              0                     


Q ss_pred             ----------------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          174 ----------------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       174 ----------------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                                      +=++|.|+|.+.+.|.+..+.++|..+... +..|.+.|-
T Consensus       251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRFI  305 (650)
T KOG2318|consen  251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRFI  305 (650)
T ss_pred             hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeeec
Confidence                            014799999999999999999999999877 456666663

>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi)

Probab=88.52  E-value=1.8  Score=33.09  Aligned_cols=21  Identities=10%  Similarity=0.148  Sum_probs=17.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHH
Q 019494          135 SNVLLASIENMQYAVTLDVLHMV  157 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~  157 (340)
                      .++++  |.|++...++|+|++.
T Consensus        52 ~rtVl--vsgip~~l~ee~l~D~   72 (88)
T PF07292_consen   52 KRTVL--VSGIPDVLDEEELRDK   72 (88)
T ss_pred             CCEEE--EeCCCCCCChhhheee
Confidence            45566  7899999999999984

This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=87.68  E-value=1.1  Score=44.64  Aligned_cols=60  Identities=17%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--------CC--eEEEEEcCChHHHHHHHHHhcC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GG--LQALIQYPDVQTAVVAKEALEG  197 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--------~g--~~afV~F~~~~~A~~A~~~lng  197 (340)
                      ++.+|  |+.|+..+||++|...|..||.+.- .=..+.        .|  -|+|+-|+++.+...-+.++.-
T Consensus       259 S~KVF--vGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~  328 (520)
T KOG0129|consen  259 SRKVF--VGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE  328 (520)
T ss_pred             cccee--ecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence            34444  9999999999999999999998642 211110        23  1599999999888877776553

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=86.17  E-value=1.1  Score=43.83  Aligned_cols=60  Identities=12%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             cccCCCCCCCHHHHHHhhccc-CceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494            9 RKYLQWQLSASGERAHVFSAF-GFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIP   69 (340)
Q Consensus         9 ~~~l~~~~~~ee~L~~lF~~f-G~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~   69 (340)
                      .+.+|.-.+- .||..++..| -.|.+|++++.  .+.+.++|.|++.++|....+++||+.|-
T Consensus        79 ilaVP~~mt~-~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn  141 (493)
T KOG0804|consen   79 ILAVPAYMTS-HDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN  141 (493)
T ss_pred             EEeccccccH-HHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence            3566766664 6777777777 56899999883  24556999999999999999999999874

>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]

Probab=85.92  E-value=0.54  Score=46.20  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=52.0

Q ss_pred             CHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          150 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       150 t~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      |.++|...|.+||+|..|.+-....  .|.|.|.+..+|-+|-. ..+..|.++   .|+|.|-++..
T Consensus       386 t~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~~-s~~avlnnr---~iKl~whnps~  447 (526)
T KOG2135|consen  386 TIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAYA-SHGAVLNNR---FIKLFWHNPSP  447 (526)
T ss_pred             hHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchhc-cccceecCc---eeEEEEecCCc
Confidence            6788999999999999998755433  59999999999977753 588999999   99999987754

>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]

Probab=85.46  E-value=0.59  Score=45.93  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           17 SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        17 ~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      .+.++|..-|.+||+|.+|.+--. .- -|.|+|.+..+|-+|.. ..+..         ++++.|+|-|-+..
T Consensus       385 nt~a~ln~hfA~fG~i~n~qv~~~-~~-~a~vTF~t~aeag~a~~-s~~av---------lnnr~iKl~whnps  446 (526)
T KOG2135|consen  385 NTIADLNPHFAQFGEIENIQVDYS-SL-HAVVTFKTRAEAGEAYA-SHGAV---------LNNRFIKLFWHNPS  446 (526)
T ss_pred             chHhhhhhhhhhcCccccccccCc-hh-hheeeeeccccccchhc-cccce---------ecCceeEEEEecCC
Confidence            346899999999999999976432 12 39999999999977763 46665         57999999987754

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=84.92  E-value=2  Score=30.58  Aligned_cols=50  Identities=26%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             ccCCCCC-CCHHHHHHhhccc----CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHh
Q 019494           10 KYLQWQL-SASGERAHVFSAF----GFVHKITTFEKTAGFQALVQFSDTETASSAKNAL   63 (340)
Q Consensus        10 ~~l~~~~-~~ee~L~~lF~~f----G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~l   63 (340)
                      ++|.... .+.+||+.+|..|    + ..+|.-+..  . -|=|.|.|.+.|.+|+..|
T Consensus         8 vhirGvd~lsT~dI~~y~~~y~~~~~-~~~IEWIdD--t-ScNvvf~d~~~A~~AL~~L   62 (62)
T PF10309_consen    8 VHIRGVDELSTDDIKAYFSEYFDEEG-PFRIEWIDD--T-SCNVVFKDEETAARALVAL   62 (62)
T ss_pred             EEEEcCCCCCHHHHHHHHHHhcccCC-CceEEEecC--C-cEEEEECCHHHHHHHHHcC
Confidence            4554433 1248999999999    4 345644432  2 2999999999999999764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=82.51  E-value=4.7  Score=39.65  Aligned_cols=66  Identities=20%  Similarity=0.187  Sum_probs=54.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccC-CeeEEEEEcCCC--CeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYD  202 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~~~--g~~afV~F~~~~~A~~A~~~lng~~i~~  202 (340)
                      +..|+  |.-+|..+|..||..+...|= .|..++|+++..  .+..+|.|.+.++|..-.+.+||..+..
T Consensus        74 ~~mLc--ilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~  142 (493)
T KOG0804|consen   74 STMLC--ILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS  142 (493)
T ss_pred             CcEEE--EEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence            66777  778999999999988876654 677888887542  3679999999999999999999997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
1sjr_A	164	Nmr Structure Of Rrm2 From Human Polypyrimidine Tra		2e-24
2adb_A	148	Solution Structure Of Polypyrimidine Tract Binding		3e-24
3zzy_A	130	Crystal Structure Of A Raver1 Pri3 Peptide In Compl		4e-22
2e5i_A	124	Solution Structure Of Rna Binding Domain 2 In Heter		3e-15

>pdb|1SJR|A Chain A, Nmr Structure Of Rrm2 From Human Polypyrimidine Tract Binding Protein Isoform 1 (Ptb1) Length = 164

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187
           G  +  +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +
Sbjct: 37  GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 96
Query: 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
           A  AK +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P  +SQPS+
Sbjct: 97  AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 152

>pdb|2ADB|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein Rbd2 Complexed With Cucucu Rna Length = 148

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187
           G  +  +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +
Sbjct: 24  GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 83
Query: 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244
           A  AK +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P  +SQPS+
Sbjct: 84  AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 139

>pdb|3ZZY|A Chain A, Crystal Structure Of A Raver1 Pri3 Peptide In Complex With Polypyrimidine Tract Binding Protein Rrm2 Length = 130

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187
           G  +  +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +
Sbjct: 19  GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 78
Query: 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 236
           A  AK +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P
Sbjct: 79  AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 126

>pdb|2E5I|A Chain A, Solution Structure Of Rna Binding Domain 2 In Heterogeneous Nuclear Ribonucleoprotein L-Like Length = 124

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 194
           + VLL SI+N  Y +T+DVL+ V +  G VQ+I +F +N G+QA++++  V  A  AK A
Sbjct: 23  NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 81
Query: 195 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 233
           L G  IY  G C L I Y+R T L++  N++ S DYT P
Sbjct: 82  LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	7e-48
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	2e-22
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	4e-42
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	1e-24
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	6e-35
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	3e-20
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	6e-28
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	5e-07
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	4e-18
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	7e-07
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	5e-05
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	2e-13
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	8e-09
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-11
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-05
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	7e-09
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	7e-09
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	2e-08
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	5e-04
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	8e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	9e-07
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	3e-06
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	4e-06
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	8e-06
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	9e-06
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	3e-05
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	6e-05
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	1e-04
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	1e-04
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	2e-04
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	2e-04
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	2e-04
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	3e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	3e-04
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	3e-04
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	5e-04
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	6e-04
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	6e-04
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	7e-04
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	7e-04
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	8e-04

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164

 Score =  157 bits (399), Expect = 7e-48
 Identities = 65/164 (39%), Positives = 87/164 (53%), Gaps = 10/164 (6%)

Query: 86  YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENM 145
           +  H       Q+  S    N  L  + +A+D          G  +  +S VL   +EN+
Sbjct: 4   HHHHGSAQAALQAVNSVQSGNLALAASAAAVD---------AGMAMAGQSPVLRIIVENL 54

Query: 146 QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 205
            Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  IY+   
Sbjct: 55  FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC- 113

Query: 206 CKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQP 249
           C L I +S+ T L++K NND+SRDYT P  P  +SQPS+     
Sbjct: 114 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 157

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164

 Score = 91.3 bits (226), Expect = 2e-22
 Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 9/105 (8%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +FS FG V KI TF K   FQAL+Q++D  +A  AK +LDG++I           CTLR
Sbjct: 65  QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLR 117

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 126
           I +S  T L+VK+ + +SRDYT P LP   S  ++D +   + GL
Sbjct: 118 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 162

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130

 Score =  142 bits (358), Expect = 4e-42
 Identities = 59/137 (43%), Positives = 78/137 (56%), Gaps = 10/137 (7%)

Query: 104 YTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 163
             N  L  + +A+D          G  +  +S VL   +EN+ Y VTLDVLH +FS FG 
Sbjct: 4   SGNLALAASAAAVD---------AGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54

Query: 164 VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVN 223
           V KI  F KN   QAL+QY D  +A  AK +L+G  IY+   C L I +S+ T L++K N
Sbjct: 55  VLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYN 113

Query: 224 NDRSRDYTLPSTPMVNS 240
           ND+SRDYT P  P  +S
Sbjct: 114 NDKSRDYTRPDLPSGDS 130

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130

 Score = 96.3 bits (239), Expect = 1e-24
 Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 7/91 (7%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +FS FG V KI TF K   FQAL+Q++D  +A  AK +LDG++I           CTLR
Sbjct: 47  QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLR 99

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 114
           I +S  T L+VK+ + +SRDYT P LP   S
Sbjct: 100 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 130

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124

 Score =  123 bits (309), Expect = 6e-35
 Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 114 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 173
           S+  +  +++   +       + VLL SI+N  Y +T+DVL+ V +  G VQ+I +F +N
Sbjct: 2   SSGSSGKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN 61

Query: 174 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 233
           G  QA++++  V  A  AK AL G  IY G  C L I Y+R T L++  N++ S DYT P
Sbjct: 62  GI-QAMVEFESVLCAQKAKAALNGADIYAGC-CTLKIEYARPTRLNVIRNDNDSWDYTKP 119

Query: 234 S 234
            
Sbjct: 120 Y 120

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124

 Score = 84.4 bits (208), Expect = 3e-20
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            V +  G V +I  F++  G QA+V+F     A  AK AL+G  I         G CTL+
Sbjct: 44  TVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLK 95

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYL 109
           I Y+  T L+V    + S DYT PYL
Sbjct: 96  IEYARPTRLNVIRNDNDSWDYTKPYL 121

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score =  107 bits (269), Expect = 6e-28
 Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 18/193 (9%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +F  +G V ++          ALVQ +D   A  A + L+G  +             +R
Sbjct: 54  ILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHG---------KPIR 103

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 143
           IT S H ++ +  +    +  T  Y           G  +     + + P S  L   + 
Sbjct: 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKN----FQNIFPPSATL--HLS 157

Query: 144 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203
           N+  +V+ + L ++FS+ G V K   F +     ALIQ   V+ AV A   L  H + + 
Sbjct: 158 NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGEN 217

Query: 204 GFCKLHISYSRHT 216
               L +S+S+ T
Sbjct: 218 --HHLRVSFSKST 228

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 149 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208
           VT   L ++F  +G VQ++ +        AL+Q  D   A +A   L GH ++      +
Sbjct: 47  VTPQSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHG---KPI 102

Query: 209 HISYSRHTDLSIKVNNDRSRDYT 231
            I+ S+H ++ +       +  T
Sbjct: 103 RITLSKHQNVQLPREGQEDQGLT 125

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 80.3 bits (198), Expect = 4e-18
 Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 26/196 (13%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           +F  +G V ++          ALVQ +D   A  A + L+G  +             +RI
Sbjct: 24  LFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---------PIRI 73

Query: 85  TYSAHTDLSVKFQSHR----SRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLA 140
           T S H ++ +  +       ++DY N  L         + Q         + P S  L  
Sbjct: 74  TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQ--------NIFPPSATLH- 124

Query: 141 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 200
            + N+  +V+ + L ++FS+ G V K   F +     ALIQ   V+ AV A   L  H +
Sbjct: 125 -LSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 183

Query: 201 YDGGFCKLHISYSRHT 216
            +     L +S+S+ T
Sbjct: 184 GEN--HHLRVSFSKST 197

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 149 VTLDVLHMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207
           VT   L ++F  +G VQ++  +F+K     AL+Q  D   A +A   L GH ++      
Sbjct: 16  VTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLAMSHLNGHKLHGK---P 70

Query: 208 LHISYSRHTDLSI----KVNNDRSRDYTLPSTPMVNSQPSILGQQPVP 251
           + I+ S+H ++ +    + +   ++DY            S   Q   P
Sbjct: 71  IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 118

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +FS+ G V K   F +     AL+Q    E A  A   L    +             LR
Sbjct: 139 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG--------ENHHLR 190

Query: 84  ITYS 87
           +++S
Sbjct: 191 VSFS 194

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 67.4 bits (164), Expect = 2e-13
 Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 18/180 (10%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84
           VF  +G V K+   +   G  A+V+ +D      A   L+   +             + +
Sbjct: 25  VFCLYGNVEKVKFMKSKPGA-AMVEMADGYAVDRAITHLNNNFMFGQ---------KMNV 74

Query: 85  TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 144
             S    +             +        + +            +++  SNVL     N
Sbjct: 75  CVSKQPAIMPGQSYGLEDG--SCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLH--FFN 130

Query: 145 MQYAVTLDVLHMVFSAFGPVQ--KIAMFDKNGG--LQALIQYPDVQTAVVAKEALEGHCI 200
               VT +    +    G  +   + +F          L+++     A+     L  + +
Sbjct: 131 APLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM 190

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 53.9 bits (129), Expect = 8e-09
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTAVVA 191
            +S VL+    +    +  D +  VF  +G V+K+  M  K G   A+++  D      A
Sbjct: 2   ADSPVLMVYGLDQSK-MNCDRVFNVFCLYGNVEKVKFMKSKPG--AAMVEMADGYAVDRA 58

Query: 192 KEALEGHCIYDGGFCKLHISYSRHTDL 218
              L  + ++     K+++  S+   +
Sbjct: 59  ITHLNNNFMFG---QKMNVCVSKQPAI 82

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 61.8 bits (149), Expect = 4e-11
 Identities = 43/188 (22%), Positives = 62/188 (32%), Gaps = 5/188 (2%)

Query: 154 LHMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212
           L+ +FS FG +  I          QA + + +V +A  A  +++G   YD     + I Y
Sbjct: 30  LYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPMRIQY 86

Query: 213 SRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQ 272
           ++ TD  I      +             +          + G  A    GA   P P   
Sbjct: 87  AK-TDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMP 145

Query: 273 PMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMP 332
           PM   P         P     P M   P + PG +P G    Q  MPGQ          P
Sbjct: 146 PMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENP 205

Query: 333 PPRPDHMQ 340
           P     + 
Sbjct: 206 PNHILFLT 213

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201
           + N+       +L M+F+ F   +++ +        A +++ +   A  A++AL+G  I 
Sbjct: 212 LTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD-IAFVEFDNEVQAGAARDALQGFKIT 270

Query: 202 DGGFCKLHISYSR 214
                 + IS+++
Sbjct: 271 QNN--AMKISFAK 281

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 52.1 bits (125), Expect = 7e-09
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 192
             S V+   +  +  +V    L      FG +  + M       QAL+++ ++ +A    
Sbjct: 13  SVSPVVH--VRGLCESVVEADLVEALEKFGTICYVMMMPFKR--QALVEFENIDSAKECV 68

Query: 193 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 228
                  +Y  G  +   +YS    ++   N+  S 
Sbjct: 69  TFAADVPVYIAG-QQAFFNYSTSKRITRPGNSGPSS 103

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100

 Score = 51.7 bits (124), Expect = 7e-09
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 127 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 186
           D  K    S V+   I  +   V    L      FGP+  + +  K    QAL+++ DV 
Sbjct: 14  DPHKTPA-SPVVH--IRGLIDGVVEADLVEALQEFGPISYVVVMPKKR--QALVEFEDVL 68

Query: 187 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 219
            A  A      + IY  G     ++YS    +S
Sbjct: 69  GACNAVNYAADNQIYIAG-HPAFVNYSTSQKIS 100

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 144 NMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 202
            +    +L  L   F  FG ++ I      +    A IQY  +  A  A   + G  +  
Sbjct: 24  GLGPNTSLAALAREFDRFGSIRTIDHVKGDS---FAYIQYESLDAAQAACAKMRGFPL-G 79

Query: 203 GGFCKLHISYSR 214
           G   +L + +++
Sbjct: 80  GPDRRLRVDFAK 91

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 23 AHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 68
          A  F  FG +  I    K   F A +Q+   + A +A   + G  +
Sbjct: 35 AREFDRFGSIRTID-HVKGDSF-AYIQYESLDAAQAACAKMRGFPL 78

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 49.5 bits (118), Expect = 8e-08
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 110 PVAPSAIDASGQLSVGL---DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 166
                   +SG +  G    D +     S V+   I  +   VT   +  +   FG V  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMGDSRSAGVPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTN 60

Query: 167 IAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDR 226
           + M       QA I+    + A               G   ++I +S H +L    + ++
Sbjct: 61  LLMLKGKN--QAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQFSNHKELKTDSSPNQ 117

Query: 227 SR 228
           +R
Sbjct: 118 AR 119

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 3/111 (2%)

Query: 230 YTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPA 289
           Y   +TP+      +  Q P     +        Q A P   Q     P           
Sbjct: 16  YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ-LHQQID 74

Query: 290 SQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 340
             +  M   H +  P   P     MQ  +P Q G        P   P + Q
Sbjct: 75  QATTSMNDMHLHNVPLVDP--NAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 1/109 (0%)

Query: 233 PSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQS 292
              P  +   + +    + M    A    G Q    P ++ +  Q   A          +
Sbjct: 28  QFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN 87

Query: 293 MPMMGNHPYMPPGSMP-MGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 340
           +P++  + YM P     MG  + Q   P  +       A        M 
Sbjct: 88  VPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 7e-06
 Identities = 19/97 (19%), Positives = 25/97 (25%), Gaps = 4/97 (4%)

Query: 247 QQPVPMVGATANQYNGAQFAPP---PPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMP 303
           Q  +            AQF PP           Q      GAVP   Q   +      + 
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 304 PGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 340
                    M  MH+     +   +  M P  P  M 
Sbjct: 71  QQIDQATTSMNDMHLHNV-PLVDPNAYMQPQVPVQMG 106

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 17/105 (16%), Positives = 23/105 (21%)

Query: 233 PSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQS 292
           PS            Q    +  AT +  +      P  +     QP        P   Q 
Sbjct: 54  PSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

Query: 293 MPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPD 337
            PM       P  +M      M    P     +          P 
Sbjct: 114 QPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPP 158

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 16/111 (14%), Positives = 25/111 (22%), Gaps = 7/111 (6%)

Query: 233 PSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQ---PMMHQPTAAGWGAVPPA 289
            +  M   Q  +  Q  VP +G         +      +Q    M           VP  
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHL----HNVPLV 91

Query: 290 SQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 340
             +  M    P      +      M     GQ          P  +   + 
Sbjct: 92  DPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPID 142

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 7/91 (7%)

Query: 257 ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQ-------SMPMMGNHPYMPPGSMPM 309
                       P +QP    P      A     Q       ++P MG   ++ P    +
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 310 GPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 340
              + Q          H+   + P      Q
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 46.0 bits (109), Expect = 9e-07
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 129 KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 188
                 S V+   I  +   VT   +  +   FG V  + M       QA I+    + A
Sbjct: 10  HGSGVPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN--QAFIEMNTEEAA 65

Query: 189 VVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 228
                          G   ++I +S H +L    + +++R
Sbjct: 66  NTMVNYYTSVTPVLRG-QPIYIQFSNHKELKTDSSPNQAR 104

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Length = 97

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 142 IENMQYAVTLDVL----HMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTAVVAKEALE 196
           I N+   +  D L    H +FS FG +  I          QA + + +V +A  A  +++
Sbjct: 13  INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ 72

Query: 197 GHCIYDGGFCKLHISYSR 214
           G   YD     + I Y++
Sbjct: 73  GFPFYDK---PMRIQYAK 87

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 142 IENMQYAVTLD----VLHMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTAVVAKEALE 196
           I N+   V  +    +L+ + S+ G +  I      +   +A I +   ++A    EA +
Sbjct: 34  ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQ 93

Query: 197 GHCIYDGGFCKLHISYSR 214
           G+         L I++S 
Sbjct: 94  GYPFQG---NPLVITFSE 108

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Length = 100

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 18/86 (20%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGGL---QALIQYPDVQTAVVAKEALEG 197
           I + +  V    L  +FS  G V  +    D+  G       ++   +  A    ++  G
Sbjct: 17  IPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76

Query: 198 HCIYDGGFCKLHISYSRHTDLSIKVN 223
             + D           +H    + + 
Sbjct: 77  KRL-DL----------KHR---LFLY 88

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 130 KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTA 188
           +L PE N +L  I N+ Y +T + ++ +F  +GP+++I           A + Y D+  A
Sbjct: 2   RLPPEVNRIL-YIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDA 60

Query: 189 VVAKEALEGHCIYDGGFCKLHISYSR 214
             A + L G  + +     L + Y  
Sbjct: 61  KNAVDHLSGFNVSN---RYLVVLYYN 83

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 66/226 (29%)

Query: 25  VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI----------PRYL-- 72
           + S +   +      K   F   V   + E A +A NA     +          P     
Sbjct: 42  LLSDYELKYCFVDKYKGTAF---VTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALL 98

Query: 73  ----LPENM------------GPCT-LRITYSAHTDLS-----VKFQSHRSRDYTNPYLP 110
               LP ++            G      + YS  T  S      ++    S         
Sbjct: 99  CVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS--------- 149

Query: 111 VAPSAIDA-SGQLSVGLDGKKL-------EPESNVLLAS----IENMQYAVT-LDVLHMV 157
            A  A     G+    L  + L          +  LL S    ++ +      +D L   
Sbjct: 150 -AARAKSDLLGKP---LGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRA 205

Query: 158 FSAFGPVQKIA-MFDKNGGLQ--ALIQYPDVQTAVVAKEALEGHCI 200
            SA            ++G L+  A+++Y   + A  A++  +G  +
Sbjct: 206 LSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGL---QALIQYPDVQTAVVAKEALEG 197
           ++N+   VT   L  +F+ F   +     F    G    QA I +P+ + A  A   + G
Sbjct: 30  LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG 89

Query: 198 HCIYD 202
           + +Y 
Sbjct: 90  YKLYG 94

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Length = 105

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 18/81 (22%)

Query: 146 QYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYD 202
           +     +V+H +FS FG +      +++G   G    ++Y     AV A +  +G+ + D
Sbjct: 30  RLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKL-D 87

Query: 203 GGFCKLHISYSRHTDLSIKVN 223
                      +HT    +VN
Sbjct: 88  K----------QHT---FRVN 95

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 200
           I N+   +  +VL  +   +G V+    +   +      + Y     A  A + L G   
Sbjct: 20  IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF-Q 78

Query: 201 YDGGFCKLHISY 212
            +     L ++Y
Sbjct: 79  LEN--FTLKVAY 88

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Length = 81

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 18/81 (22%)

Query: 146 QYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYD 202
           +     +V+H +FS FG +      +++G   G    ++Y     AV A +  +G+ + D
Sbjct: 16  RLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKL-D 73

Query: 203 GGFCKLHISYSRHTDLSIKVN 223
                      +HT    +VN
Sbjct: 74  K----------QHT---FRVN 81

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 149 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD--GGFC 206
           V+ + L  V    G V  + M   N    +  +Y   + +  A   L G  + D  G   
Sbjct: 39  VSRNQLLPVLEKCGLVDALLMP-PNKPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96

Query: 207 KLHISY 212
            L++++
Sbjct: 97  TLYLNF 102

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPV---QKIAMFD----KNGGL--QALIQYPDVQTAVVAK 192
           ++N+   V    L  +F  +       +  MFD    K G +  QA I  P+ + A  A 
Sbjct: 50  VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKAL 109

Query: 193 EALEGHCIYDGGFCK-LHISYSR 214
           +   G+ ++     K + + ++R
Sbjct: 110 KEANGYVLFG----KPMVVQFAR 128

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 129 KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 188
                   V+L   +N+        +   FS FG + ++ +    GG+ A++++ +   A
Sbjct: 4   GSSGRSKTVIL--AKNLPAGTLAAEIQETFSRFGSLGRVLL--PEGGITAIVEFLEPLEA 59

Query: 189 VVAKEALEG 197
             A   L  
Sbjct: 60  RKAFRHLAY 68

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 27/191 (14%), Positives = 47/191 (24%), Gaps = 43/191 (22%)

Query: 144 NMQYAVTLDVLHMVFSAFGPVQKIA---MFDKNGGL---QALIQYPDVQTAVVAKEALEG 197
           N+ +  T + L     + G    +      ++  G     AL+      ++    + L  
Sbjct: 75  NLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 134

Query: 198 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATA 257
             +  G          +    +  V          P      SQ  +  ++       + 
Sbjct: 135 REL-HG----------Q----NPVVT---------PVNKQFLSQFEMQSRKTTQSGQMSG 170

Query: 258 NQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMH 317
               G          P   +      GAVP   +                P GPG     
Sbjct: 171 EGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG-------------PAGPGGPPPP 217

Query: 318 MPGQSGMQHHH 328
            P      HHH
Sbjct: 218 FPAGQTHHHHH 228

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 24 HVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSI 68
           VF    F+ K+   +  K+ G+ A ++F+  E A  A N+ + R I
Sbjct: 34 EVFEKATFI-KVPQNQNGKSKGY-AFIEFASFEDAKEALNSCNKREI 78

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 144 NMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQ---ALIQYPDVQTAVVAKEALEG 197
           ++      D +   F  +G ++ I    D+  G     AL++Y   + A+ AKEAL G
Sbjct: 79  SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQ---ALIQYP 183
           G      S  L   + N+ Y  + + L  +FSA+GP+ ++    D         A + + 
Sbjct: 1   GSSGSSGSGRLF--VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFM 58

Query: 184 DVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214
             + AV A   ++G  ++ G    LH+  S 
Sbjct: 59  FPEHAVKAYAEVDGQ-VFQGR--MLHVLPST 86

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 144 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203
            +   +T   L   F  FG ++ I +  +     A IQ+   Q A VA E      I +G
Sbjct: 19  GLGDTITETDLRNHFYQFGEIRTITVVQRQQ--CAFIQFATRQAAEVAAEKSFNKLIVNG 76

Query: 204 GFCKLHISYSR 214
              +L++ + R
Sbjct: 77  --RRLNVKWGR 85

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNG---GLQALIQYPDVQTAVVAKEALEG 197
           I  + ++ T + L  +  A G V+ +  + ++ G   GL A ++Y +   A  A   ++G
Sbjct: 22  ISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGL-AYVEYENESQASQAVMKMDG 80

Query: 198 H 198
            
Sbjct: 81  M 81

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 25 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 68
           F+       +   +K   + A V FS+ E A  A  AL+G+ +
Sbjct: 35 EFNNIKPG-AVERVKKIRDY-AFVHFSNREDAVEAMKALNGKVL 76

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 144 NMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGGLQ-ALIQYPDVQTAVVAKEALEGHCIY 201
           N+   VT  ++  +FS  GP +   M  +         +++ + + A  A  A+ G  I 
Sbjct: 22  NLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81

Query: 202 D 202
            
Sbjct: 82  G 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.97
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.96
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.96
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.96
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.96
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.96
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.96
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.96
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.96
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.96
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.95
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.95
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.95
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.95
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.94
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.94
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.94
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.93
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.93
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.93
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.92
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.92
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.91
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.85
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.84
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.82
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.8
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.79
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.74
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.74
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.71
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.71
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.71
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.7
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.69
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.68
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.68
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.67
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.67
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.67
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.66
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.65
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.65
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.64
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.64
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.64
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.64
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.64
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.64
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.63
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.63
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.63
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.63
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.63
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.63
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.63
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.63
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.63
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.63
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.63
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.63
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.62
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.62
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.62
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.62
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.62
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.62
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.62
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.62
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.62
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.61
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.61
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.61
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.61
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.61
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.61
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.61
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.61
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.61
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.61
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.61
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.61
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.61
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.61
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.6
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.6
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.6
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.6
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.6
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.6
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.6
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.6
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.6
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.6
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.6
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.59
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.59
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.59
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.59
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.59
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.59
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.59
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.59
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.59
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.58
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.58
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.58
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.58
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.58
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.58
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.58
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.58
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.58
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.58
2div_A	99	TRNA selenocysteine associated protein; structural	99.58
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.58
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.57
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.57
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.57
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.57
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.57
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.57
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.57
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.57
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.56
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.56
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.56
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.56
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.56
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.55
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.55
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.55
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.55
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.55
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.55
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.55
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.55
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.55
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.55
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.55
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.54
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.54
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.54
1x5p_A	97	Negative elongation factor E; structure genomics,	99.54
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.54
1x5p_A	97	Negative elongation factor E; structure genomics,	99.53
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.53
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.53
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.53
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.53
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.53
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.53
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.53
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.53
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.53
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.53
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.53
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.53
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.53
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.53
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.53
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.52
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.52
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.52
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.52
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.52
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.52
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.52
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.52
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.52
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.52
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.52
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.51
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.51
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.51
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.51
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.51
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.51
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.51
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.51
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.51
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.51
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.51
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.51
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.51
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.51
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.51
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.51
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.5
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.5
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.5
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.5
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.5
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.5
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.5
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.5
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.5
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.5
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.5
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.5
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.5
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.5
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.5
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.5
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.5
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.5
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.5
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.5
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.49
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.49
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.49
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.49
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.49
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.49
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.49
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.49
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.48
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.48
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.48
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.48
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.48
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.48
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.48
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.48
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.48
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.48
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.48
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.48
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.48
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.47
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.47
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.47
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.47
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.47
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.47
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.47
2div_A	99	TRNA selenocysteine associated protein; structural	99.47
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.47
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.47
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.47
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.46
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.46
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.46
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.46
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.46
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.46
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.46
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.45
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.45
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.45
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.45
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.45
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.44
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.44
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.44
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.44
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.44
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.44
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.44
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.44
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.44
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.44
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.44
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.44
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.44
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.43
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.43
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.43
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.43
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.43
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.43
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.43
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.43
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.43
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.43
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.43
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.43
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.43
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.43
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.43
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.42
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.42
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.42
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.42
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.42
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.41
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.41
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.41
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.41
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.41
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.41
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.41
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.41
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.41
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.41
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.41
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.4
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.11
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.4
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.4
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.4
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.4
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.4
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.4
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.39
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.39
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.39
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.39
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.39
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.39
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.39
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.39
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.38
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.38
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.37
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.37
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.37
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.37
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.36
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.36
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.36
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.36
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.36
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.36
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.35
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.34
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.34
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.34
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.34
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.34
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.34
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.02
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.33
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.33
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.33
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.33
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.32
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.32
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.32
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.32
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.32
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.32
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.32
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.31
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.3
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.3
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.3
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.29
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.28
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.28
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.28
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.27
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.27
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.27
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.26
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.26
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.26
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.26
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.26
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.25
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.21
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.21
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.2
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.2
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.2
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.18
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.18
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.18
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.17
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.17
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.09
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	99.09
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.09
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.99
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.91
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.87
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.79
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.74
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.71
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.64
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.51
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	97.89
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	97.83
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	97.3
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	97.26
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	97.12
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	96.7
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	96.57
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	96.36
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	96.31
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	96.08
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	95.83
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	95.69
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	95.28
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	95.26
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	94.55
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	93.61
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	89.62
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	88.6
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	85.32

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.97  E-value=2.4e-30  Score=230.20  Aligned_cols=161  Identities=19%  Similarity=0.249  Sum_probs=136.0

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .|++.|||++++.+  |++|+++|++||+|.+|++++    +.+++||||+|.+.++|.+|++.+|+..+         .
T Consensus        13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---------~   83 (213)
T 4f02_A           13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---------K   83 (213)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc---------C
Confidence            36788999999854  999999999999999999886    23567899999999999999999999884         6


Q ss_pred             CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494           79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF  158 (340)
Q Consensus        79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F  158 (340)
                      |+.|++.++........                                     .....|+  |+||+..+|+++|+++|
T Consensus        84 g~~i~~~~~~~~~~~~~-------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~F  124 (213)
T 4f02_A           84 GKPVRIMWSQRDPSLRK-------------------------------------SGVGNIF--IKNLDKSIDNKALYDTF  124 (213)
T ss_dssp             TEECEEEECCCCTHHHH-------------------------------------HCTTEEE--EESCCTTCCHHHHHHHH
T ss_pred             Ccccccccccccccccc-------------------------------------cccccce--ECCcccccHHHHHHHHH
Confidence            99999998875422110                                     0134555  89999999999999999


Q ss_pred             cccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          159 SAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       159 ~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      +.||.|++|+|+.+.   +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+|++++.
T Consensus       125 ~~~G~i~~~~i~~d~~~~~g~-~fV~f~~~~~a~~Ai~~lng~~~~g~---~i~V~~a~~~~  182 (213)
T 4f02_A          125 SAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVGRFKSRK  182 (213)
T ss_dssp             GGGSCEEEEEEEEETTEEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCCHH
T ss_pred             hhcCCeEEEEeeccCCCCceE-EEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEcCCCc
Confidence            999999999987543   455 99999999999999999999999998   99999998754

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.96  E-value=5.4e-29  Score=210.94  Aligned_cols=155  Identities=16%  Similarity=0.275  Sum_probs=132.0

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      .++|||++++.+  |++|+++|+.||+|.+|.+++.    .++++|||+|.+.++|.+|++.|||..+         .|+
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---------~g~   72 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---------QTK   72 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---------CCc
Confidence            567899999854  9999999999999999988763    2347899999999999999999999885         699


Q ss_pred             eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494           81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA  160 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~  160 (340)
                      +|+|.+++......                                       .+..|+  |.||+..+|+++|+++|++
T Consensus        73 ~l~v~~~~~~~~~~---------------------------------------~~~~l~--v~nl~~~~t~~~l~~~f~~  111 (167)
T 1fxl_A           73 TIKVSYARPSSASI---------------------------------------RDANLY--VSGLPKTMTQKELEQLFSQ  111 (167)
T ss_dssp             ECEEEECCCCCGGG---------------------------------------TTCEEE--EESCCTTCCHHHHHHHHGG
T ss_pred             eEEEEecCCCcccC---------------------------------------CCCcEE--ECCCCCcCCHHHHHHHHHh
Confidence            99999987542111                                       244555  8999999999999999999


Q ss_pred             cCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          161 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       161 fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ||.|.++++....     +|+ |||+|.+.++|.+|++.|||..+.|+ ...|+|+||
T Consensus       112 ~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~v~~A  167 (167)
T 1fxl_A          112 YGRIITSRILVDQVTGVSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGA-TEPITVKFA  167 (167)
T ss_dssp             GSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred             cCCEeEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhcCCccCCC-ccceEEEeC
Confidence            9999999987643     455 99999999999999999999999987 446999886

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.96  E-value=1.5e-28  Score=227.01  Aligned_cols=197  Identities=19%  Similarity=0.301  Sum_probs=141.3

Q ss_pred             ccccccccCCCCCCC--HHHHH----HhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494            4 IWPLSRKYLQWQLSA--SGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN   76 (340)
Q Consensus         4 ~~~~~~~~l~~~~~~--ee~L~----~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~   76 (340)
                      ..+..+|||++++.+  |++|+    ++|++||+|.+|++++ +..++||||+|.+.++|.+|++.|||..|        
T Consensus         6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--------   77 (282)
T 3pgw_A            6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--------   77 (282)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCee--------
Confidence            467889999999854  88866    8999999999998876 44667899999999999999999999885        


Q ss_pred             CCCceEEEeeccCCccccc-ccCc---CCc--------CCC----CCCCCCCC-----CccCc-----------------
Q 019494           77 MGPCTLRITYSAHTDLSVK-FQSH---RSR--------DYT----NPYLPVAP-----SAIDA-----------------  118 (340)
Q Consensus        77 ~~~~~l~v~~s~~~~l~~~-~~~~---~~~--------~~~----~~~~~~~~-----~~~~~-----------------  118 (340)
                       .|+.|+|+|++.+..... ....   +..        ...    ........     ....+                 
T Consensus        78 -~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (282)
T 3pgw_A           78 -YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH  156 (282)
T ss_pred             -CCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence             699999999975432110 0000   000        000    00000000     00000                 


Q ss_pred             ----------------CCCcccc------------------CCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019494          119 ----------------SGQLSVG------------------LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV  164 (340)
Q Consensus       119 ----------------~~~~~~~------------------~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v  164 (340)
                                      .+.....                  .......+++++|+  |.||+..+|+++|+++|++||.|
T Consensus       157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~i  234 (282)
T 3pgw_A          157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILF--LTNLPEETNELMLSMLFNQFPGF  234 (282)
T ss_pred             CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEE--EeCCCCcCCHHHHHHHHHhcCCe
Confidence                            0000000                  00001223466777  89999999999999999999999


Q ss_pred             eEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeC-CCCccEEEEEeecC
Q 019494          165 QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRH  215 (340)
Q Consensus       165 ~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~-~~~~~~l~v~~ak~  215 (340)
                      ++|++..+++|+ |||+|.+.++|.+|++.|||..|. |+   .|+|+|+|.
T Consensus       235 ~~v~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~akk  282 (282)
T 3pgw_A          235 KEVRLVPGRHDI-AFVEFDNEVQAGAARDALQGFKITQNN---AMKISFAKK  282 (282)
T ss_pred             EEEEEecCCCcE-EEEEeCCHHHHHHHHHHcCCcEeCCCC---EEEEEEecC
Confidence            999999877675 999999999999999999999999 77   999999873

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.96  E-value=5.7e-29  Score=211.45  Aligned_cols=156  Identities=19%  Similarity=0.274  Sum_probs=132.8

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +.++|||++++.+  |++|+++|+.||+|.+|.+++.    .++++|||+|.+.++|.+|++.|+|..+         .|
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---------~g   72 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---------RN   72 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe---------CC
Confidence            4678999999854  8999999999999999988763    2456899999999999999999999884         69


Q ss_pred             ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494           80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS  159 (340)
Q Consensus        80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~  159 (340)
                      ++|+|.+++.....                                       ..+.+|+  |.||+..+|+++|+++|+
T Consensus        73 ~~l~v~~~~~~~~~---------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~f~  111 (168)
T 1b7f_A           73 KRLKVSYARPGGES---------------------------------------IKDTNLY--VTNLPRTITDDQLDTIFG  111 (168)
T ss_dssp             EECEEEECCCCSST---------------------------------------TTTCEEE--EESCCTTCCHHHHHHHHT
T ss_pred             cEEEEEecCCCccc---------------------------------------CCCCCEE--EeCCCCCCCHHHHHHhhh
Confidence            99999998754211                                       1245666  899999999999999999


Q ss_pred             ccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          160 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       160 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +||.|++|++...+     +|+ |||+|.+.++|.+|++.|||..+.|+ .+.|+|+||
T Consensus       112 ~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~l~V~~A  168 (168)
T 1b7f_A          112 KYGSIVQKNILRDKLTGRPRGV-AFVRYNKREEAQEAISALNNVIPEGG-SQPLSVRLA  168 (168)
T ss_dssp             SSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred             cCCcEEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhcCCEecCC-CeEEEEEeC
Confidence            99999999987644     354 99999999999999999999999883 349999986

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.96  E-value=7.7e-29  Score=219.65  Aligned_cols=187  Identities=13%  Similarity=0.108  Sum_probs=136.4

Q ss_pred             ccccccCCCCC---CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            6 PLSRKYLQWQL---SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         6 ~~~~~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +.+.|||+|++   .+|++|+++|++||+|.+|++++. ++++|||+|.+.++|++|++.|||..+         .|++|
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~---------~g~~l   72 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFM---------FGQKM   72 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEE---------CCceE
Confidence            45678999998   358999999999999999999864 356899999999999999999999985         59999


Q ss_pred             EEeeccCCccccccc---Cc---CCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHH
Q 019494           83 RITYSAHTDLSVKFQ---SH---RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM  156 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~  156 (340)
                      +|.+|+.+....+..   ..   ..+++.+.....       .... .........+++++|+  |.||++++|+++|++
T Consensus        73 ~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r-------~~~~-~~~~~~~~~~p~~~l~--v~NLp~~~t~~~L~~  142 (205)
T 3tyt_A           73 NVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNR-------FSTP-EQAAKNRIQHPSNVLH--FFNAPLEVTEENFFE  142 (205)
T ss_dssp             EEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCS-------CSSH-HHHTTSCCCCCCSEEE--EEEECTTCCHHHHHH
T ss_pred             EEEEccCCccCCCcccccccCCccccccCCCcccc-------ccCc-ccccccccCCCcceEE--EeCCCCCCCHHHHHH
Confidence            999998654311100   00   001111100000       0000 0000011234677877  889999999999999


Q ss_pred             HHcccCCe--eEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCC-ccEEEEEee
Q 019494          157 VFSAFGPV--QKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGG-FCKLHISYS  213 (340)
Q Consensus       157 ~F~~fG~v--~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~-~~~l~v~~a  213 (340)
                      +|+.||.|  ++|+++..+   +|+ |||+|++.++|.+|++.|||+.|.+.+ ..++.|.|+
T Consensus       143 ~F~~~G~v~~~~v~~~~~~~~~~g~-gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~  204 (205)
T 3tyt_A          143 ICDELGVKRPTSVKVFSGKSERSSS-GLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC  204 (205)
T ss_dssp             HHHHHTCCCCSEEEECSCCSSSSEE-EEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred             HHHhcCCcceEEEEEEcCCCCCceE-EEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence            99999999  899988653   355 999999999999999999999998873 335666554

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.96  E-value=2.5e-28  Score=219.53  Aligned_cols=187  Identities=26%  Similarity=0.314  Sum_probs=141.5

Q ss_pred             ccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            6 PLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         6 ~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +..+|||++++.   +|++|+++|++||+|.+|.+++.. ++||||+|.+.++|++|++.|||..|         .|++|
T Consensus        33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~---------~g~~l  102 (229)
T 2adc_A           33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKL---------HGKPI  102 (229)
T ss_dssp             CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBC---------SSSBC
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEE
Confidence            567899999876   499999999999999999998754 56799999999999999999999884         69999


Q ss_pred             EEeeccCCcccccccC----cCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494           83 RITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF  158 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F  158 (340)
                      +|.+++..........    ....++........       .... ........+++++|+  |.||+..+|+++|+++|
T Consensus       103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~--V~nlp~~~t~~~l~~~f  172 (229)
T 2adc_A          103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRF-------KKPG-SKNFQNIFPPSATLH--LSNIPPSVSEEDLKVLF  172 (229)
T ss_dssp             EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCC-------CSTT-SGGGTTCCCSCSEEE--EECCCTTCCHHHHHHHH
T ss_pred             EEEEecCccccCccccccccccccccccCccccc-------CCcc-ccccccCCCCCCEEE--EeCCCccCCHHHHHHHH
Confidence            9999985532221100    00111111000000       0000 000011124567777  88999999999999999


Q ss_pred             cccC-CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeC-CCCccEEEEEeecCC
Q 019494          159 SAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT  216 (340)
Q Consensus       159 ~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~-~~~~~~l~v~~ak~~  216 (340)
                      +.|| .|.+|+++.+++|+ |||+|.+.++|.+|++.|||..|. ++   .|+|+|++++
T Consensus       173 ~~~G~~i~~v~i~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~~g~---~l~v~~a~~~  228 (229)
T 2adc_A          173 SSNGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST  228 (229)
T ss_dssp             HTTSCCEEEEEECSSSTTC-EEEEESSHHHHHHHHHHHTTCBSSSSC---BCEEEECSSC
T ss_pred             HHcCCCeeEEEEEECCCcE-EEEEECCHHHHHHHHHHHCCCccCCCC---eEEEEEecCC
Confidence            9999 99999997766786 999999999999999999999998 77   9999999864

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-28  Score=208.22  Aligned_cols=155  Identities=16%  Similarity=0.231  Sum_probs=131.5

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +|||++++.+  |++|+++|+.||+|.+|.+++.   .++++|||+|.+.++|.+|++.|||..+         .|+.|+
T Consensus         2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~~i~   72 (166)
T 3md3_A            2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI---------ENNIVK   72 (166)
T ss_dssp             EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred             EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---------CCCeeE
Confidence            5788888754  8999999999999999998762   3567899999999999999999999985         699999


Q ss_pred             EeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019494           84 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP  163 (340)
Q Consensus        84 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~  163 (340)
                      |.++.......                                     ..++.+|+  |.||+..+|+++|+++|+.||.
T Consensus        73 v~~~~~~~~~~-------------------------------------~~~~~~l~--v~nl~~~~t~~~l~~~f~~~G~  113 (166)
T 3md3_A           73 INWAFQSQQSS-------------------------------------SDDTFNLF--VGDLNVNVDDETLRNAFKDFPS  113 (166)
T ss_dssp             EEECCCCCCCC-------------------------------------CTTCEEEE--EESCCTTCCHHHHHHHHTTSTT
T ss_pred             EEEcCCCCCCC-------------------------------------CCCCceEE--ECCCCCCCCHHHHHHHHhccCC
Confidence            99987542110                                     11245566  8999999999999999999999


Q ss_pred             eeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494          164 VQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH  215 (340)
Q Consensus       164 v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~  215 (340)
                      |.++.+....     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+||+.
T Consensus       114 i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~  166 (166)
T 3md3_A          114 YLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWAAK  166 (166)
T ss_dssp             EEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEESCC
T ss_pred             eeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCccCCc---EEEEEecCC
Confidence            9999987542     354 99999999999999999999999998   999999863

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.96  E-value=8.4e-29  Score=219.08  Aligned_cols=170  Identities=15%  Similarity=0.194  Sum_probs=136.1

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .+..+|||++++.+  |++|+++|+.||+|.+|.+++    +..+++|||+|.+.++|.+|++.|||..|         .
T Consensus        26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---------~   96 (216)
T 2qfj_A           26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---------G   96 (216)
T ss_dssp             HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---------C
T ss_pred             CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee---------C
Confidence            45678999999854  999999999999999999875    23577899999999999999999999884         6


Q ss_pred             CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494           79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF  158 (340)
Q Consensus        79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F  158 (340)
                      |+.|+|.++..............                            .....+++|+  |.||+..+|+++|+++|
T Consensus        97 g~~l~v~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~l~--v~nlp~~~t~~~l~~~f  146 (216)
T 2qfj_A           97 GRNIKVGRPSNIGQAQPIIDQLA----------------------------EEARAFNRIY--VASVHQDLSDDDIKSVF  146 (216)
T ss_dssp             -CCCEEECCSCCGGGHHHHHHHH----------------------------HHHTTSCEEE--EECCCTTCCHHHHHHHH
T ss_pred             CeeEEEecCCCccccchhhhhhh----------------------------cccCCCcEEE--EeCCCCcCCHHHHHHHH
Confidence            99999988764421100000000                            0001245666  89999999999999999


Q ss_pred             cccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          159 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       159 ~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      +.||.|++|++....     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+|++...
T Consensus       147 ~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~---~i~V~~a~~~~  206 (216)
T 2qfj_A          147 EAFGKIKSATLARDPTTGKHKGY-GFIEYEKAQSSQDAVSSMNLFDLGGQ---YLRVGKAVTPP  206 (216)
T ss_dssp             TTSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBCSSS---BCEEEECSSCS
T ss_pred             hccCCeeEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHHccCCEeCCc---EEEEEEecCCC
Confidence            999999999987642     455 99999999999999999999999998   99999988764

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.96  E-value=4.5e-28  Score=207.07  Aligned_cols=161  Identities=16%  Similarity=0.234  Sum_probs=131.0

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ..+|||++++.+  |++|+++|++||+|.+|.+++.      .+++||||+|.+.++|++|++.|||..+..      ..
T Consensus         3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~------~~   76 (175)
T 3nmr_A            3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP------GM   76 (175)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT------TC
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc------CC
Confidence            467899999854  8999999999999999988863      345789999999999999999999988631      23


Q ss_pred             CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494           79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF  158 (340)
Q Consensus        79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F  158 (340)
                      ++.+++.+++.....                                      ...+++|+  |.||+..+|+++|+++|
T Consensus        77 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~--v~nl~~~~t~~~l~~~F  116 (175)
T 3nmr_A           77 HHPIQMKPADSEKNN--------------------------------------AVEDRKLF--IGMISKKCTENDIRVMF  116 (175)
T ss_dssp             SSCCEEEECGGGCCS--------------------------------------CGGGSEEE--EESCCTTCCHHHHHHHH
T ss_pred             ccceEEccccccccc--------------------------------------cCCCCeEE--EcCCCCcCCHHHHHHHH
Confidence            577777776643211                                      01245566  89999999999999999


Q ss_pred             cccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          159 SAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       159 ~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      ++||.|++|++....    +|+ |||+|.+.++|.+|++.|||..+.+++.+.|+|+||.
T Consensus       117 ~~~G~i~~v~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad  175 (175)
T 3nmr_A          117 SSFGQIEECRILRGPDGLSRGC-AFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD  175 (175)
T ss_dssp             GGGSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred             HhCCCEEEEEEEECCCCCEEEE-EEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence            999999999987653    344 9999999999999999999998876322499999974

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.96  E-value=4.3e-28  Score=212.32  Aligned_cols=186  Identities=26%  Similarity=0.316  Sum_probs=140.7

Q ss_pred             cccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ..+|||++++.   +|++|+++|+.||+|.+|.+++.. +++|||+|.+.++|.+|++.|||..+         .|++|+
T Consensus         3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~~l~   72 (198)
T 1qm9_A            3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKL---------HGKPIR   72 (198)
T ss_dssp             CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCC---------SSCCCE
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCee---------cCeEEE
Confidence            46789999876   499999999999999999988644 45799999999999999999999884         699999


Q ss_pred             EeeccCCcccccccC----cCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494           84 ITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS  159 (340)
Q Consensus        84 v~~s~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~  159 (340)
                      |.+++..........    ....++.....       ...... .........+++++|+  |.||+..+|+++|+++|+
T Consensus        73 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~r~~~~-~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f~  142 (198)
T 1qm9_A           73 ITLSKHQNVQLPREGQEDQGLTKDYGNSPL-------HRFKKP-GSKNFQNIFPPSATLH--LSNIPPSVSEEDLKVLFS  142 (198)
T ss_dssp             EEECCCCSCCCSSSSSSSSSCEEESSCCCT-------TSSSSC-CCCCCSCCCCCCCEEE--ECCCCTTCCHHHHHHHHH
T ss_pred             EEEecCCCcCCCCcCCccccccccccCCch-------hhccCc-cccccccCCCCccEEE--EeCCCCCCCHHHHHHHHH
Confidence            999986532221100    00111111000       000000 0000011234577777  899999999999999999


Q ss_pred             ccC-CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeC-CCCccEEEEEeecCC
Q 019494          160 AFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT  216 (340)
Q Consensus       160 ~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~-~~~~~~l~v~~ak~~  216 (340)
                      +|| .|.+|+++.+++|+ |||+|.+.++|.+|++.|||..|. ++   .|+|+|++++
T Consensus       143 ~~G~~v~~v~i~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~a~~~  197 (198)
T 1qm9_A          143 SNGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST  197 (198)
T ss_dssp             HTTSCCCEEEESSTTSSC-EEEECSSHHHHHHHHHHHTSSCCSSCC---SCCEEEECCC
T ss_pred             HcCCCceEEEEEeCCCcE-EEEEeCCHHHHHHHHHHhcCCccCCCC---eEEEEeeccc
Confidence            999 99999998767786 999999999999999999999998 77   9999999864

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.95  E-value=8.6e-28  Score=205.10  Aligned_cols=153  Identities=20%  Similarity=0.284  Sum_probs=130.6

Q ss_pred             ccccccccCCCCCCC--HHHHHHhhccc----C-------ceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494            4 IWPLSRKYLQWQLSA--SGERAHVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR   70 (340)
Q Consensus         4 ~~~~~~~~l~~~~~~--ee~L~~lF~~f----G-------~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~   70 (340)
                      +++..+|||++++.+  |++|+++|++|    |       .|.++.+.+  ++++|||+|.+.++|.+|+ .|||..+  
T Consensus         1 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~--   75 (172)
T 2g4b_A            1 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF--   75 (172)
T ss_dssp             CCGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEE--
T ss_pred             CCcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEe--
Confidence            578899999999854  99999999999    6       677776654  5678999999999999999 8999884  


Q ss_pred             cCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCC
Q 019494           71 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVT  150 (340)
Q Consensus        71 ~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt  150 (340)
                             .|++|+|.+++.....                                       ..+.+|+  |+||+..+|
T Consensus        76 -------~g~~i~v~~~~~~~~~---------------------------------------~~~~~l~--v~nlp~~~t  107 (172)
T 2g4b_A           76 -------QGQSLKIRRPHDYQPL---------------------------------------PGAHKLF--IGGLPNYLN  107 (172)
T ss_dssp             -------TTEECEEECCSSCCCC---------------------------------------TTTTCEE--EECCCTTCC
T ss_pred             -------cCceeeecCCcccCCC---------------------------------------CCCCEEE--EEcCCCcCC
Confidence                   6999999987643210                                       1144555  899999999


Q ss_pred             HHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          151 LDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       151 ~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +++|+++|++||.|..|++...+     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+||
T Consensus       108 ~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~A  171 (172)
T 2g4b_A          108 DDQVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRA  171 (172)
T ss_dssp             HHHHHHHHHTTSCEEEEEEEECTTTCSEEEE-EEEEESSTTHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred             HHHHHHHHHhcCCceEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHcCCCEECCe---EEEEEeC
Confidence            99999999999999999987653     455 99999999999999999999999998   9999987

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.95  E-value=3.1e-27  Score=205.86  Aligned_cols=164  Identities=10%  Similarity=0.137  Sum_probs=129.1

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.+  |++|+++|+.||+|.+|.+++.    .+++||||+|.+.++|.+|++. ++..         +.|
T Consensus        12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~---------~~g   81 (196)
T 1l3k_A           12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK---------VDG   81 (196)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE---------ETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE---------ECC
Confidence            4678999999854  9999999999999999988762    2467899999999999999975 7776         469


Q ss_pred             ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494           80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS  159 (340)
Q Consensus        80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~  159 (340)
                      +.|+|.++.........                                 ......++|+  |.||+..+|+++|+++|+
T Consensus        82 ~~l~v~~~~~~~~~~~~---------------------------------~~~~~~~~l~--V~nLp~~~t~~~l~~~F~  126 (196)
T 1l3k_A           82 RVVEPKRAVSREDSQRP---------------------------------GAHLTVKKIF--VGGIKEDTEEHHLRDYFE  126 (196)
T ss_dssp             EECEEEECCC--------------------------------------------CCSEEE--EECCTTTCCHHHHHHHHT
T ss_pred             EEeeeecccCccccccc---------------------------------ccCCCcceEE--EeCCCCCCCHHHHHHHHh
Confidence            99999998754211100                                 0011245666  899999999999999999


Q ss_pred             ccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494          160 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS  219 (340)
Q Consensus       160 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~  219 (340)
                      .||.|++|++....     +|+ |||+|.+.++|.+|++. +|..|.|+   .|+|.|+.++...
T Consensus       127 ~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~-~~~~~~G~---~i~v~~a~~k~~~  186 (196)
T 1l3k_A          127 QYGKIEVIEIMTDRGSGKKRGF-AFVTFDDHDSVDKIVIQ-KYHTVNGH---NCEVRKALSKQEM  186 (196)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHC-SCCEETTE---ECEEEECC-----
T ss_pred             cCCCeEEEEEeecCCCCCccce-EEEEECCHHHHHHHHHh-CCcEECCE---EEEEEecCChhHh
Confidence            99999999987542     455 99999999999999987 89999998   9999999876543

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.95  E-value=6.9e-27  Score=203.97  Aligned_cols=175  Identities=19%  Similarity=0.236  Sum_probs=133.1

Q ss_pred             ccccccCCCCCCC--HHHHHHhhccc----C-------ceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL   72 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~f----G-------~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~   72 (340)
                      ...+|||++++.+  |++|+++|+.|    |       .|.++.+.  .+++||||+|.+.++|++|+ .|||..|    
T Consensus         3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~----   75 (198)
T 2yh0_A            3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIF----   75 (198)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEE----
T ss_pred             ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEE----
Confidence            5678999999854  99999999999    4       55666553  35678999999999999999 8999884    


Q ss_pred             CCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHH
Q 019494           73 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLD  152 (340)
Q Consensus        73 ~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~  152 (340)
                           .|++|+|.+++...............  .+                 +.........+++|+  |.||+..+|++
T Consensus        76 -----~g~~i~v~~~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~l~--v~nl~~~~~~~  129 (198)
T 2yh0_A           76 -----QGQSLKIRRPHDYQPLPGMSENPSVY--VP-----------------GVVSTVVPDSAHKLF--IGGLPNYLNDD  129 (198)
T ss_dssp             -----TTEEEEEECCCCCCCCCCSSSCSSCC--CT-----------------TSSCCCSSCCCCEEE--EECCCTTCCHH
T ss_pred             -----cCceEEEeCCCCCCCCCCCcCCCcCC--CC-----------------CCccCCCCCCCCEEE--EeCCCCCCCHH
Confidence                 69999999987542211100000000  00                 000011112456666  88999999999


Q ss_pred             HHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          153 VLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       153 ~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      +|+++|++||.|.+|++....     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+|+++..
T Consensus       130 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~  195 (198)
T 2yh0_A          130 QVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRASVGA  195 (198)
T ss_dssp             HHHHHHHTBSCEEEEEEEECTTTCSEEEE-EEEEESSSSHHHHHHHHHTTCEETTE---ECEEEESCCCC
T ss_pred             HHHHHHHHcCCccEEEEeecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEEECCCCC
Confidence            999999999999999987653     455 99999999999999999999999998   99999998754

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.95  E-value=1.2e-27  Score=203.28  Aligned_cols=155  Identities=9%  Similarity=0.122  Sum_probs=129.6

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ++..+|||++++.+  |++|+++|+.||+|.+|.+++    +.+++||||+|.+.++|.+|++.  +..         +.
T Consensus         1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~---------~~   69 (167)
T 2cjk_A            1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHI---------LD   69 (167)
T ss_dssp             CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCE---------ET
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccc---------cC
Confidence            46789999999854  999999999999999999876    23567899999999999999984  444         46


Q ss_pred             CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494           79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF  158 (340)
Q Consensus        79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F  158 (340)
                      |+.|+|.++..+....                                       .+.+|+  |+||+..+|+++|+++|
T Consensus        70 g~~i~v~~~~~~~~~~---------------------------------------~~~~l~--V~nlp~~~t~~~l~~~F  108 (167)
T 2cjk_A           70 GKVIDPKRAIPRDEQD---------------------------------------KTGKIF--VGGIGPDVRPKEFEEFF  108 (167)
T ss_dssp             TEECCCEECCCHHHHH---------------------------------------HCEEEE--EEEECTTCCHHHHHHHH
T ss_pred             CeEcccccccchhhcc---------------------------------------CCCeEE--ECCCCCCCCHHHHHHHH
Confidence            8888888876432110                                       134555  89999999999999999


Q ss_pred             cccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          159 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       159 ~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      +.||.|++|++...+     +|+ |||+|.+.++|.+|++ ++|..|.|+   .|+|.|++++
T Consensus       109 ~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~i~V~~a~pk  166 (167)
T 2cjk_A          109 SQWGTIIDAQLMLDKDTGQSRGF-GFVTYDSADAVDRVCQ-NKFIDFKDR---KIEIKRAEPR  166 (167)
T ss_dssp             HTTSCCSEEECCCSSSSSTTSEE-EEEEESSHHHHHHHHH-CSEECSSSS---CEEEEECCCC
T ss_pred             HhCccEEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHh-CCCEEeCCe---EEEEeecCCC
Confidence            999999999987542     465 9999999999999998 899999999   9999999865

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.94  E-value=3.3e-27  Score=193.24  Aligned_cols=108  Identities=49%  Similarity=0.755  Sum_probs=100.1

Q ss_pred             CCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          131 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       131 ~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ...++++|+|+|+||++.+|+++|+++|++||+|.+|+|+.+++|++|||+|.+.++|.+|++.|||..|+++ ||.|+|
T Consensus        22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~LrI  100 (130)
T 3zzy_A           22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRI  100 (130)
T ss_dssp             ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEEE
T ss_pred             cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEEE
Confidence            3457999999999999999999999999999999999999887888899999999999999999999999996 889999


Q ss_pred             EeecCCCCccccCCCCCCCCCCCCCCCCC
Q 019494          211 SYSRHTDLSIKVNNDRSRDYTLPSTPMVN  239 (340)
Q Consensus       211 ~~ak~~~~~~~~~~~~~~d~~~p~~p~~~  239 (340)
                      +|||++++++++|++++||||+|.+|.++
T Consensus       101 ~~ak~~~l~v~~n~~~srDyt~~~lp~~~  129 (130)
T 3zzy_A          101 DFSKLTSLNVKYNNDKSRDYTRPDLPSGD  129 (130)
T ss_dssp             EECSCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred             EecCCCceeEEecCCCcccCCCCCCCCCC
Confidence            99999999999999999999999987653

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.94  E-value=1.6e-27  Score=204.31  Aligned_cols=158  Identities=17%  Similarity=0.175  Sum_probs=128.7

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +..+|||++++.+  |++|+++|+.||.|..+.+..   +.+++||||+|.+.++|.+|+ .|||..|         .|+
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~   81 (175)
T 1fje_B           12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---------FGN   81 (175)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---------TTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---------CCe
Confidence            4678999999854  899999999999876632222   446779999999999999999 5999885         699


Q ss_pred             eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494           81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA  160 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~  160 (340)
                      +|+|.+++.+....                                     ...+++|+  |.||+..+|+++|+++|+.
T Consensus        82 ~l~v~~~~~~~~~~-------------------------------------~~~~~~l~--v~nlp~~~t~~~l~~~F~~  122 (175)
T 1fje_B           82 EIKLEKPKGRDSKK-------------------------------------VRAARTLL--AKNLSFNITEDELKEVFED  122 (175)
T ss_dssp             EEEEECCCCSSCST-------------------------------------TGGGGEEE--EESCCSSCCHHHHHHHCTT
T ss_pred             EEEEecCCCccccc-------------------------------------cccCCEEE--EeCCCCCCCHHHHHHHHHh
Confidence            99999987542110                                     01255666  8999999999999999999


Q ss_pred             cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          161 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       161 fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      ||.|..+......+|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+|++++
T Consensus       123 ~g~v~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~k  174 (175)
T 1fje_B          123 ALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYTGEK  174 (175)
T ss_dssp             CSEEEEECSSSSCCSE-EEEECSSHHHHHHHHHHHTEEEETTE---EEEEEECSSC
T ss_pred             cCeEEEecCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEecCCC
Confidence            9998877111234575 99999999999999999999999998   9999999864

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.94  E-value=6.3e-26  Score=209.54  Aligned_cols=161  Identities=16%  Similarity=0.222  Sum_probs=135.5

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.+  |++|+++|+.||.|.+|.++..    .++++|||+|.+.++|.+|++.|||..|         .|+
T Consensus        95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~  165 (284)
T 3smz_A           95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL---------GPR  165 (284)
T ss_dssp             SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe---------CCc
Confidence            356899888854  8999999999999999988752    3467899999999999999999999884         699


Q ss_pred             eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCC-CHHHHHHHHc
Q 019494           81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAV-TLDVLHMVFS  159 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~v-t~~~L~~~F~  159 (340)
                      +|+|.++..+.....                                    ...+++|+  |.||+..+ |+++|+++|+
T Consensus       166 ~i~v~~a~~~~~~~~------------------------------------~~~~~~l~--v~nlp~~~~~~~~l~~~f~  207 (284)
T 3smz_A          166 TLYVHWTDAGQLTPA------------------------------------LLHSRCLC--VDRLPPGFNDVDALCRALS  207 (284)
T ss_dssp             ECEEEECCGGGCCTT------------------------------------TTSCSEEE--EECCCTTCCCHHHHHHHTC
T ss_pred             EEEEEECCCCCCCcc------------------------------------cCCccEEE--EecCCcccCCHHHHHHHhh
Confidence            999999875532110                                    11255666  89999996 9999999999


Q ss_pred             ccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494          160 AFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       160 ~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~  218 (340)
                      .||.|++|+|..+.    +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+|+++...
T Consensus       208 ~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a~~~~~  266 (284)
T 3smz_A          208 AVHSPTFCQLACGQDGQLKGF-AVLEYETAEMAEEAQQQADGLSLGGS---HLRVSFCAPGPP  266 (284)
T ss_dssp             SSSCCSEEEEEECSSCCEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCSSSC
T ss_pred             CCCCeEEEEEEECCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCCe---EEEEEEecCCCc
Confidence            99999999987642    354 99999999999999999999999998   999999987764

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.93  E-value=2e-25  Score=204.52  Aligned_cols=151  Identities=20%  Similarity=0.300  Sum_probs=128.7

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+.++|||++++.  +|++|+++|+.||+|.+|.+.+  +++||||+|.+.++|.+|+..|||..|         .|+.|
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i---------~g~~l   88 (261)
T 3sde_A           20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTIL---------KSRPL   88 (261)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEE---------CCcee
Confidence            3456899999984  4999999999999999999865  467899999999999999999999985         69999


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG  162 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG  162 (340)
                      +|.++..                                             +.+|+  |.||+..+|+++|+++|+.||
T Consensus        89 ~v~~a~~---------------------------------------------~~~l~--v~nl~~~~t~~~l~~~F~~~G  121 (261)
T 3sde_A           89 RIRFATH---------------------------------------------GAALT--VKNLSPVVSNELLEQAFSQFG  121 (261)
T ss_dssp             EEEECCC---------------------------------------------SSEEE--EESCCTTCCHHHHHHHHGGGS
T ss_pred             Eeeeccc---------------------------------------------CCccc--ccCCCCCCCHHHHHHHHHhcC
Confidence            9998763                                             23455  899999999999999999999


Q ss_pred             CeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhc-CCeeC---CCCccEEEEEeecCCC
Q 019494          163 PVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALE-GHCIY---DGGFCKLHISYSRHTD  217 (340)
Q Consensus       163 ~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~ln-g~~i~---~~~~~~l~v~~ak~~~  217 (340)
                      .|++|+|..+.    +|+ |||+|.+.++|.+|++.|| +..+.   ++   .|.|.+++...
T Consensus       122 ~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~r---~i~v~~~~~~~  180 (261)
T 3sde_A          122 PVEKAVVVVDDRGRATGK-GFVEFAAKPPARKALERCGDGAFLLTTTPR---PVIVEPMEQFD  180 (261)
T ss_dssp             CEEEEEEEEETTSCEEEE-EEEEESSHHHHHHHHHHHHHSCEESSSSCC---BCEEEECCCEE
T ss_pred             CeEEEEeeeCCCCCcCcE-EEEEeCCHHHHHHHHHHhcCCeEEecCCCc---eEEEeeccccC
Confidence            99999987543    355 9999999999999999995 44544   55   99999987653

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.93  E-value=4.9e-25  Score=203.55  Aligned_cols=151  Identities=16%  Similarity=0.208  Sum_probs=130.7

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+..+|||++++.+  |+||+++|+.|| |.++.+  ..++++|||+|.+.++|.+|++.|||..+         .|++|
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~---------~g~~i   87 (284)
T 3smz_A           20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRL---------REREL   87 (284)
T ss_dssp             HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCee---------CCeEE
Confidence            35678999999854  899999999999 999887  34567899999999999999999999985         69999


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG  162 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG  162 (340)
                      +|+++..                                             +.+|+  |+||+..+|+++|+++|+.||
T Consensus        88 ~v~~~~~---------------------------------------------~~~l~--v~nlp~~~t~~~l~~~f~~~G  120 (284)
T 3smz_A           88 SVQLQPT---------------------------------------------DALLC--VANLPPSLTQQQFEELVRPFG  120 (284)
T ss_dssp             EEEECCC---------------------------------------------SCEEE--EESCCTTCCHHHHHHHHGGGS
T ss_pred             EEEecCC---------------------------------------------CCEEE--EcCCCCcCCHHHHHHHHHhcC
Confidence            9997442                                             23455  899999999999999999999


Q ss_pred             CeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494          163 PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       163 ~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~  218 (340)
                      .|..|++....     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|++....
T Consensus       121 ~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~i~v~~a~~~~~  177 (284)
T 3smz_A          121 SLERCFLVYSERTGQSKGY-GFAEYMKKDSAARAKSDLLGKPLGPR---TLYVHWTDAGQL  177 (284)
T ss_dssp             CEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCGGGC
T ss_pred             CeeEEEEEeeCCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEECCCCCC
Confidence            99999987532     355 99999999999999999999999998   999999977543

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.93  E-value=2.4e-25  Score=206.45  Aligned_cols=163  Identities=15%  Similarity=0.186  Sum_probs=132.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccC-ceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFG-FVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG-~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...+|||++++.  ++++|+++|+.|| +|.+|.+.+   +.++++|||+|.+.++|.+|++.|||..|         .|
T Consensus       116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g  186 (292)
T 2ghp_A          116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI---------EG  186 (292)
T ss_dssp             CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence            456789998874  4899999999999 999998876   23567899999999999999999999985         69


Q ss_pred             ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCC-CCHHHHHHHH
Q 019494           80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA-VTLDVLHMVF  158 (340)
Q Consensus        80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~-vt~~~L~~~F  158 (340)
                      +.|+|.++.........                                ......+++|+  |.||+.. +|+++|+++|
T Consensus       187 ~~l~v~~a~~~~~~~~~--------------------------------~~~~~~~~~l~--v~nlp~~~~t~~~l~~~F  232 (292)
T 2ghp_A          187 YTLVTKVSNPLEKSKRT--------------------------------DSATLEGREIM--IRNLSTELLDENLLRESF  232 (292)
T ss_dssp             EECEEEECCCC-----------------------------------------CCTTTEEE--EEEECTTTCCHHHHHHHH
T ss_pred             cEEEEEECCCCcccccc--------------------------------cccCCCCceEE--EECCCcccCCHHHHHHHH
Confidence            99999998754221100                                00012356777  8899999 9999999999


Q ss_pred             cccCCeeEEEEEcCC------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          159 SAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       159 ~~fG~v~~v~i~~~~------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      +.||.|++|+|..+.      +|+ |||+|.+.++|.+|+ .|||..|.|+   .|+|+|++++
T Consensus       233 ~~~G~v~~v~i~~~~~~tg~~~g~-afV~F~~~~~A~~A~-~l~g~~~~g~---~i~V~~a~~k  291 (292)
T 2ghp_A          233 EGFGSIEKINIPAGQKEHSFNNCC-AFMVFENKDSAERAL-QMNRSLLGNR---EISVSLADKK  291 (292)
T ss_dssp             GGGSCEEEEECCSCCC---CCCEE-EEEEESSHHHHHHHG-GGTTEEETTE---EEEEEECCCC
T ss_pred             hccCCeeEEEEEecCCcCCCCceE-EEEEeCCHHHHHHHH-HhcCCEECCc---EEEEEEecCC
Confidence            999999999987543      465 999999999999999 9999999998   9999999865

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.92  E-value=4.3e-25  Score=179.69  Aligned_cols=102  Identities=43%  Similarity=0.670  Sum_probs=96.1

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +++++|+|+|+||++.+|+++|+++|++||.|++|+|+.++ ||+|||+|+|.++|.+|++.|||..|+++ ||.|+|+|
T Consensus        21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~~   98 (124)
T 2e5i_A           21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIEY   98 (124)
T ss_dssp             CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESS-SEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEEC
T ss_pred             CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEEE
Confidence            46899999999999999999999999999999999998764 86799999999999999999999999997 77999999


Q ss_pred             ecCCCCccccCCCCCCCCCCCCCC
Q 019494          213 SRHTDLSIKVNNDRSRDYTLPSTP  236 (340)
Q Consensus       213 ak~~~~~~~~~~~~~~d~~~p~~p  236 (340)
                      |+++.+.++.+++++||||+|.+|
T Consensus        99 Ak~~~l~v~~n~~~srDyt~~~l~  122 (124)
T 2e5i_A           99 ARPTRLNVIRNDNDSWDYTKPYLG  122 (124)
T ss_dssp             CSCSCCCCSSCSSSEEESSCCCCC
T ss_pred             ecCCcceeecCCCCCCCCCCCCCC
Confidence            999999999999999999999876

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.92  E-value=7.2e-25  Score=203.24  Aligned_cols=151  Identities=14%  Similarity=0.099  Sum_probs=127.7

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ++..+|||++++.+  |++|+++|+.||+|.+|.+++.  .++++|||+|.+.++|.+|++ |||..+         .|+
T Consensus        39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~---------~g~  108 (292)
T 2ghp_A           39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVV---------GQN  108 (292)
T ss_dssp             ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEE---------TTE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEe---------CCc
Confidence            35678999998844  8999999999999999998872  246799999999999999995 999874         699


Q ss_pred             eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494           81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA  160 (340)
Q Consensus        81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~  160 (340)
                      +|+|.++.                                              +.+|+  |+||+..+|+++|+++|+.
T Consensus       109 ~i~v~~~~----------------------------------------------~~~l~--v~nlp~~~t~~~l~~~f~~  140 (292)
T 2ghp_A          109 EIIVSHLT----------------------------------------------ECTLW--MTNFPPSYTQRNIRDLLQD  140 (292)
T ss_dssp             ECEEEECC----------------------------------------------SCEEE--EECCCTTCCHHHHHHHHHH
T ss_pred             EEEEEECC----------------------------------------------CCEEE--EECCCCCCCHHHHHHHHHH
Confidence            99999753                                              23455  8999999999999999999


Q ss_pred             cC-CeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          161 FG-PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       161 fG-~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      || .|..|.+...    .+|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|+++..
T Consensus       141 ~G~~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~  198 (292)
T 2ghp_A          141 INVVALSIRLPSLRFNTSRRF-AYIDVTSKEDARYCVEKLNGLKIEGY---TLVTKVSNPLE  198 (292)
T ss_dssp             TTCCCCEEECC-------CCE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCCC-
T ss_pred             hCCCeEEEEEEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEECCCCc
Confidence            99 9999998652    3565 99999999999999999999999998   99999988654

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.91  E-value=2.3e-24  Score=182.82  Aligned_cols=111  Identities=50%  Similarity=0.743  Sum_probs=97.9

Q ss_pred             CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          132 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       132 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      .++++++.|+|+||++.+|+++|+++|++||+|++|+|+.++ +|+ |||+|+|.++|.+|++.|||..|+++ ||.|+|
T Consensus        41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgf-AFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V  118 (164)
T 1sjr_A           41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQ-ALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRI  118 (164)
T ss_dssp             CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEE-EEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEE
T ss_pred             CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCE-EEEEECCHHHHHHHHHHhCCCEecCC-CcEEEE
Confidence            457899999999999999999999999999999999998665 455 99999999999999999999999885 569999


Q ss_pred             EeecCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 019494          211 SYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI  244 (340)
Q Consensus       211 ~~ak~~~~~~~~~~~~~~d~~~p~~p~~~~~~~~  244 (340)
                      +|++++++.++.+++++||||+|.+|.+.+++++
T Consensus       119 ~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~~~  152 (164)
T 1sjr_A          119 DFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL  152 (164)
T ss_dssp             EECSSSSCCCCCCSSSEEESSCSCCCCCC-----
T ss_pred             EEecCCcccccccCCCCccccCCCCCCCCCCCCc
Confidence            9999999999999999999999998877655443

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.85  E-value=2.3e-21  Score=158.52  Aligned_cols=101  Identities=43%  Similarity=0.631  Sum_probs=88.9

Q ss_pred             ccccccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ...+|||+|++  .+|++|+++|++||+|.+|++.++.++++|||+|.+.++|++|++.|||+.|+       .++++|+
T Consensus        27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-------g~~~~Lr   99 (130)
T 3zzy_A           27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTLR   99 (130)
T ss_dssp             SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE-------TTEEEEE
T ss_pred             ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec-------CCCcEEE
Confidence            34678999985  56899999999999999999888765656999999999999999999999986       2348999


Q ss_pred             EeeccCCcccccccCcCCcCCCCCCCCCCC
Q 019494           84 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAP  113 (340)
Q Consensus        84 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~  113 (340)
                      |+||+.+++.++++++++|||++|.++..+
T Consensus       100 I~~ak~~~l~v~~n~~~srDyt~~~lp~~~  129 (130)
T 3zzy_A          100 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGD  129 (130)
T ss_dssp             EEECSCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred             EEecCCCceeEEecCCCcccCCCCCCCCCC
Confidence            999999999999999999999999887643

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.84  E-value=2.3e-20  Score=156.65  Aligned_cols=137  Identities=15%  Similarity=0.193  Sum_probs=107.6

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHh-cCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcC
Q 019494           41 TAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS  119 (340)
Q Consensus        41 ~~~~~AFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (340)
                      .-+++++|+|.+.++|++|++.| ||..+         .| .+++.+++.+.............                
T Consensus        11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---------~G-~~~~~~a~~~~~~~~~~~~~~~~----------------   64 (150)
T 2i2y_A           11 TLKGETTTEAVDAATAEKVFKQYANDNGV---------DG-EWTYDDATKTFTVTEGSHHHHHH----------------   64 (150)
T ss_dssp             SSCEEEEEECSSHHHHTTTHHHHHHHHTC---------CC-EEEEETTTTEEEEECSSSSCCCC----------------
T ss_pred             cccccceeeecCHHHHHHHHHHHhcCCCC---------CC-ceecccccCcccccccccccccc----------------
Confidence            34668999999999999999999 99885         57 99999877542211100000000                


Q ss_pred             CCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCe
Q 019494          120 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC  199 (340)
Q Consensus       120 ~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~  199 (340)
                             .......++++|+  |+||+.++|+++|+++|+.||.|++|+|..+++|+ |||+|.+.++|.+|++.|||..
T Consensus        65 -------~~~~~~~~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~~  134 (150)
T 2i2y_A           65 -------MHRDSCPLDCKVY--VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGF-AFVEFEDPRDAADAVRELDGRT  134 (150)
T ss_dssp             -------SCSSSSTTSCEEE--EESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSE-EEEEESSHHHHHHHHHHHSSSC
T ss_pred             -------ccccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcE-EEEEECCHHHHHHHHHHcCCCE
Confidence                   0001112456766  89999999999999999999999999998877786 9999999999999999999999


Q ss_pred             eCCCCccEEEEEeecCC
Q 019494          200 IYDGGFCKLHISYSRHT  216 (340)
Q Consensus       200 i~~~~~~~l~v~~ak~~  216 (340)
                      |.|+   .|+|+|++++
T Consensus       135 ~~g~---~l~v~~a~~~  148 (150)
T 2i2y_A          135 LCGC---RVRVELSNGE  148 (150)
T ss_dssp             SSSS---CCEEEECCCC
T ss_pred             ECCe---EEEEEEcCCC
Confidence            9998   9999998765

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.82  E-value=1.3e-19  Score=153.05  Aligned_cols=138  Identities=18%  Similarity=0.199  Sum_probs=98.7

Q ss_pred             ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcC
Q 019494           40 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS  119 (340)
Q Consensus        40 ~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (340)
                      ...++||||+|.+.++|++|++.+++...         .+..+.+................                   
T Consensus        10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-------------------   61 (158)
T 2kn4_A           10 KTLKGETTTEAVDAATAEKVFKQYANDNG---------VDGEWTYDDATKTFTVTEGSHHH-------------------   61 (158)
T ss_dssp             SSCEEEEEEECSSHHHHHHHHHHHHHHHT---------CCCEEEEETTTTEEEEECCCCCS-------------------
T ss_pred             ccccchhHHHHHHHHhHHHHHHhhcccCC---------CCCcccccCcccccccccccccc-------------------
Confidence            45678999999999999999999887542         12222222211110000000000                   


Q ss_pred             CCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHH
Q 019494          120 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA  194 (340)
Q Consensus       120 ~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~  194 (340)
                             ..........+|+  |+||+.++|+++|+++|+.||.|++|+|..+     .+|+ |||+|.+.++|.+|++.
T Consensus        62 -------~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~  131 (158)
T 2kn4_A           62 -------HHHMDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDA  131 (158)
T ss_dssp             -------SCCCCCCBCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCE-EEEEESBHHHHHHHHHH
T ss_pred             -------ccccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHH
Confidence                   0000012345666  8999999999999999999999999998753     3565 99999999999999999


Q ss_pred             hcCCeeCCCCccEEEEEeecCCCC
Q 019494          195 LEGHCIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       195 lng~~i~~~~~~~l~v~~ak~~~~  218 (340)
                      |||..|.|+   .|+|+|++....
T Consensus       132 l~g~~~~g~---~l~v~~a~~~~~  152 (158)
T 2kn4_A          132 MDGAVLDGR---ELRVQMARYGRP  152 (158)
T ss_dssp             STTEESSSS---EEEEEEECCSSC
T ss_pred             hCCCEECCe---EEEEEECCCCCC
Confidence            999999998   999999987643

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.80  E-value=2e-19  Score=152.49  Aligned_cols=100  Identities=42%  Similarity=0.612  Sum_probs=88.0

Q ss_pred             cccccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      ..+|||+|++  ++|++|+++|++||+|.+|+++++.+++||||+|.|.++|++|++.|||+.|+       .++++|+|
T Consensus        46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-------g~g~~L~V  118 (164)
T 1sjr_A           46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTLRI  118 (164)
T ss_dssp             EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS-------SSCSCEEE
T ss_pred             eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec-------CCCcEEEE
Confidence            3567888877  34899999999999999999987666779999999999999999999999975       24599999


Q ss_pred             eeccCCcccccccCcCCcCCCCCCCCCCC
Q 019494           85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAP  113 (340)
Q Consensus        85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~  113 (340)
                      +|++.+++.++.+.+++|||+++.++...
T Consensus       119 ~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~  147 (164)
T 1sjr_A          119 DFSKLTSLNVKYNNDKSRDYTRPDLPSGD  147 (164)
T ss_dssp             EECSSSSCCCCCCSSSEEESSCSCCCCCC
T ss_pred             EEecCCcccccccCCCCccccCCCCCCCC
Confidence            99999999999999999999999887654

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.79  E-value=4.5e-19  Score=144.10  Aligned_cols=95  Identities=37%  Similarity=0.500  Sum_probs=82.2

Q ss_pred             ccccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494            8 SRKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus         8 ~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      .+|||+|++  ++|++|+++|++||+|.+|+++++ .+++|||+|.|.++|.+|++.|||..|+       .++++|+|+
T Consensus        26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~-------g~~~~l~V~   97 (124)
T 2e5i_A           26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIY-------AGCCTLKIE   97 (124)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCB-------TTBSEEEEE
T ss_pred             EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEec-------CCCeEEEEE
Confidence            356777775  448999999999999999998775 4546999999999999999999999975       234799999


Q ss_pred             eccCCcccccccCcCCcCCCCCCCC
Q 019494           86 YSAHTDLSVKFQSHRSRDYTNPYLP  110 (340)
Q Consensus        86 ~s~~~~l~~~~~~~~~~~~~~~~~~  110 (340)
                      |++.+.+.++.+++++|||++|.++
T Consensus        98 ~Ak~~~l~v~~n~~~srDyt~~~l~  122 (124)
T 2e5i_A           98 YARPTRLNVIRNDNDSWDYTKPYLG  122 (124)
T ss_dssp             CCSCSCCCCSSCSSSEEESSCCCCC
T ss_pred             EecCCcceeecCCCCCCCCCCCCCC
Confidence            9999999999999999999998765

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.74  E-value=9.3e-18  Score=130.94  Aligned_cols=80  Identities=24%  Similarity=0.329  Sum_probs=72.1

Q ss_pred             CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCe--eCCCCccEEE
Q 019494          132 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLH  209 (340)
Q Consensus       132 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~--i~~~~~~~l~  209 (340)
                      .+++++|+  |+||++.+|+++|+++|++||.|++|++.+.+ |+ |||+|++.++|.+|++.||+..  |.|+   .|+
T Consensus        18 ~~ps~~l~--V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-g~-AFVef~~~~~A~~Av~~ln~~~~~i~Gr---~i~   90 (100)
T 3r27_A           18 TPASPVVH--IRGLIDGVVEADLVEALQEFGPISYVVVMPKK-RQ-ALVEFEDVLGACNAVNYAADNQIYIAGH---PAF   90 (100)
T ss_dssp             CCCCSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCEEETTE---EEE
T ss_pred             CCCCcEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhcCCCceeCCc---EEE
Confidence            35688888  89999999999999999999999999998654 65 9999999999999999999986  6788   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |+||+.+.+
T Consensus        91 V~~S~~k~l   99 (100)
T 3r27_A           91 VNYSTSQKI   99 (100)
T ss_dssp             EEECSCSCC
T ss_pred             EEecccccc
Confidence            999998765

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.74  E-value=2.9e-18  Score=137.56  Aligned_cols=75  Identities=15%  Similarity=0.133  Sum_probs=65.8

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .++|||++++.  +|++|+++|++||+|.+|++++.  .+++||||+|.+.++|++|++.|||..|         .|++|
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~---------~g~~i   75 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL---------NDRKV   75 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE---------CCEEE
Confidence            46799999985  49999999999999999988763  3467899999999999999999999985         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        76 ~V~~a~~~   83 (115)
T 4f25_A           76 FVGRFKSR   83 (115)
T ss_dssp             EEEESSCC
T ss_pred             EEEECCCc
Confidence            99998754

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.71  E-value=6.9e-17  Score=127.34  Aligned_cols=81  Identities=16%  Similarity=0.194  Sum_probs=71.7

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCe--eCCCCccEEEE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLHI  210 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~--i~~~~~~~l~v  210 (340)
                      +++++|+  |+||++.+|+++|+++|++||.|++|.|.+.+ |+ |||+|++.++|.+|++.|++..  |.|+   .|+|
T Consensus        13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~i~Gr---~l~V   85 (104)
T 1wex_A           13 SVSPVVH--VRGLCESVVEADLVEALEKFGTICYVMMMPFK-RQ-ALVEFENIDSAKECVTFAADVPVYIAGQ---QAFF   85 (104)
T ss_dssp             CCCSEEE--EESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCCBSSSS---BCEE
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEE
Confidence            4678888  88999999999999999999999999988754 65 9999999999999999998754  8888   9999


Q ss_pred             EeecCCCCcc
Q 019494          211 SYSRHTDLSI  220 (340)
Q Consensus       211 ~~ak~~~~~~  220 (340)
                      +|++.+..+.
T Consensus        86 ~~a~~~~~~~   95 (104)
T 1wex_A           86 NYSTSKRITR   95 (104)
T ss_dssp             EECSSSSCCC
T ss_pred             EEccCccccC
Confidence            9999877653

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=129.54  Aligned_cols=80  Identities=18%  Similarity=0.186  Sum_probs=70.7

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..|+..|||+|++.  +|+||+++|++||+|.+|++++  +++||||+|.+.++|.+|++.|++..+.       +.|++
T Consensus        18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~-------i~Gr~   88 (100)
T 3r27_A           18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIY-------IAGHP   88 (100)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEE-------ETTEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCce-------eCCcE
Confidence            45778899999984  4899999999999999999886  4578999999999999999999998743       57999


Q ss_pred             EEEeeccCCcc
Q 019494           82 LRITYSAHTDL   92 (340)
Q Consensus        82 l~v~~s~~~~l   92 (340)
                      |+|+||++++|
T Consensus        89 i~V~~S~~k~l   99 (100)
T 3r27_A           89 AFVNYSTSQKI   99 (100)
T ss_dssp             EEEEECSCSCC
T ss_pred             EEEEecccccc
Confidence            99999998865

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.71  E-value=3.2e-17  Score=128.03  Aligned_cols=76  Identities=22%  Similarity=0.406  Sum_probs=68.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++.|+  |+|||.++|+++|+++|++||+|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus        19 gt~lf--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~gr---~l~   92 (99)
T 4fxv_A           19 GTNLI--VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGY-GFVNYVTAKDAERAINTLNGLRLQSK---TIK   92 (99)
T ss_dssp             CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCccccc-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence            45666  99999999999999999999999999987532     355 99999999999999999999999998   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |+||+++
T Consensus        93 V~~AkPS   99 (99)
T 4fxv_A           93 VSYARPS   99 (99)
T ss_dssp             EEECCBC
T ss_pred             EEEeeCC
Confidence            9999863

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=4.4e-17  Score=128.29  Aligned_cols=80  Identities=20%  Similarity=0.255  Sum_probs=71.4

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC--CeeCCCCccEEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHIS  211 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng--~~i~~~~~~~l~v~  211 (340)
                      ++++|+  |+||++++|+++|+++|++||+|++|+|.+.+ |+ |||+|++.++|.+|++.|++  ..|.|+   .|+|+
T Consensus        15 ~~~~Lf--V~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-Gf-aFVeF~~~~~A~~Ai~~l~~~~~~l~Gr---~l~V~   87 (105)
T 1sjq_A           15 PSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYIQ   87 (105)
T ss_dssp             CCCEEE--ECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTSCCEETTE---ECCBC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEEE
Confidence            467777  89999999999999999999999999998764 65 99999999999999999874  689998   99999


Q ss_pred             eecCCCCcc
Q 019494          212 YSRHTDLSI  220 (340)
Q Consensus       212 ~ak~~~~~~  220 (340)
                      ||+.+.+..
T Consensus        88 ~A~~~~~~~   96 (105)
T 1sjq_A           88 FSNHKELKT   96 (105)
T ss_dssp             CCSSSSCCC
T ss_pred             EcCCCCCCc
Confidence            998877653

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=1.3e-16  Score=128.51  Aligned_cols=81  Identities=20%  Similarity=0.244  Sum_probs=72.4

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC--CeeCCCCccEEEE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHI  210 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng--~~i~~~~~~~l~v  210 (340)
                      +++++|+  |+||++++|+++|+++|++||.|++|+|++.+ |+ |||+|++.++|.+|++.|++  ..|.|+   .|+|
T Consensus        29 ~ps~~Lf--VgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-G~-AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr---~l~V  101 (119)
T 2ad9_A           29 VPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYI  101 (119)
T ss_dssp             SCCSEEE--EESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-TE-EEEECSCHHHHHHHHHHHHHHCCCBTTB---CCEE
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CE-EEEEECCHHHHHHHHHHhccCCceECCe---EEEE
Confidence            4577877  89999999999999999999999999998764 65 99999999999999999984  689998   9999


Q ss_pred             EeecCCCCcc
Q 019494          211 SYSRHTDLSI  220 (340)
Q Consensus       211 ~~ak~~~~~~  220 (340)
                      +||+.+.++.
T Consensus       102 ~~a~~k~~~~  111 (119)
T 2ad9_A          102 QFSNHKELKT  111 (119)
T ss_dssp             EECSSSSCCC
T ss_pred             EEccCCCCCc
Confidence            9999887653

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.68  E-value=4.6e-17  Score=134.35  Aligned_cols=120  Identities=18%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             ceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCcc
Q 019494           44 FQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS  123 (340)
Q Consensus        44 ~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (340)
                      .++|++|.|+..|..|+..++|...         .++. ...++...                                 
T Consensus         5 ~~~~~~~~~~~~~~~a~~~~~g~~~---------~g~~-~~~~~~~~---------------------------------   41 (135)
T 2lea_A            5 HHHHHHSSGLVPRGSHMASMTGGQQ---------MGRG-SMSYGRPP---------------------------------   41 (135)
T ss_dssp             ----------------------------------------CCSCCSC---------------------------------
T ss_pred             ccccccccCCCchhhhhhhccCCCC---------CCCC-CCCcCCCC---------------------------------
Confidence            4689999999999999999998652         2221 11111100                                 


Q ss_pred             ccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494          124 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGH  198 (340)
Q Consensus       124 ~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~  198 (340)
                            ....++++|+  |+||+.++|+++|+++|+.||.|++|+|..+     .+|+ |||+|.+.++|.+|++.|||.
T Consensus        42 ------~~~~~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~F~~~~~A~~Ai~~l~g~  112 (135)
T 2lea_A           42 ------PDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDAMDGA  112 (135)
T ss_dssp             ------SSGGGCCCEE--EECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSC-CEEECSCHHHHHHHHTTTTTC
T ss_pred             ------CCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCC
Confidence                  0011245566  8999999999999999999999999998643     2566 999999999999999999999


Q ss_pred             eeCCCCccEEEEEeecCCCC
Q 019494          199 CIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       199 ~i~~~~~~~l~v~~ak~~~~  218 (340)
                      .|.++   .|+|+|++....
T Consensus       113 ~i~g~---~l~V~~a~~~~~  129 (135)
T 2lea_A          113 VLDGR---ELRVQMARYGRP  129 (135)
T ss_dssp             CSSSS---CCEEEECCCCCC
T ss_pred             EECCE---EEEEEECCCCCC
Confidence            99999   999999987553

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.68  E-value=1e-16  Score=121.34  Aligned_cols=71  Identities=18%  Similarity=0.263  Sum_probs=65.9

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH  215 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~  215 (340)
                      |+|+||++.+|+++|+++|++||+|+++++.. ++|| |||+|.+.++|.+|++.|||.+++++   +|+|++|..
T Consensus        10 L~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGf-aFVey~~~~eA~~Ai~~Ln~~~l~gr---~I~V~~A~e   80 (89)
T 2wbr_A           10 LLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGI-ALCKYTTREEANKAQMALNNCVLANT---TIFAESPSE   80 (89)
T ss_dssp             EEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEECCCH
T ss_pred             EEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcE-EEEEECCHHHHHHHHHHhcCCEECCc---EEEEEECCH
Confidence            44999999999999999999999999999876 4576 99999999999999999999999999   999999853

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=3.5e-16  Score=122.62  Aligned_cols=80  Identities=23%  Similarity=0.283  Sum_probs=71.4

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc--CCeeCCCCccEEEE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHI  210 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln--g~~i~~~~~~~l~v  210 (340)
                      +++++|+  |+||++.+|+++|+++|++||.|++|.|.+. +|+ |||+|++.++|.+|++.|+  +..|.|+   .|+|
T Consensus        13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V   85 (101)
T 2cq1_A           13 APSRVLH--IRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQ-AFLELATEEAAITMVNYYSAVTPHLRNQ---PIYI   85 (101)
T ss_dssp             SCCSEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTE-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCE-EEEEECCHHHHHHHHHHhccCCceECCc---EEEE
Confidence            4578877  8999999999999999999999999998876 465 9999999999999999875  6779998   9999


Q ss_pred             EeecCCCCc
Q 019494          211 SYSRHTDLS  219 (340)
Q Consensus       211 ~~ak~~~~~  219 (340)
                      +|++.+.++
T Consensus        86 ~~a~~~~~~   94 (101)
T 2cq1_A           86 QYSNHKELK   94 (101)
T ss_dssp             EECSCSSCC
T ss_pred             EEcCcccCc
Confidence            999987765

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3.6e-16  Score=119.49  Aligned_cols=79  Identities=15%  Similarity=0.242  Sum_probs=68.1

Q ss_pred             CCCcEEEEEeecCCCCCCHHH----HHHHHccc-CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDV----LHMVFSAF-GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~----L~~~F~~f-G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      +++.++ |||.||++.+++++    |+++|++| |+|.+|.     .|+ |||+|.+.++|.+|++.|||..++|+   .
T Consensus         6 ~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~-AfV~F~~~esA~~A~~~l~G~~l~gr---~   75 (96)
T 2diu_A            6 SGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCS-AILRFINQDSAERAQKRMENEDVFGN---R   75 (96)
T ss_dssp             CCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTC-EEEEESSHHHHHHHHHHHTTCCSSSS---C
T ss_pred             CCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCE-EEEEECCHHHHHHHHHHhcCCccCCc---e
Confidence            456663 45999999999998    56899999 5999982     276 99999999999999999999999999   9


Q ss_pred             EEEEeecCCCCccc
Q 019494          208 LHISYSRHTDLSIK  221 (340)
Q Consensus       208 l~v~~ak~~~~~~~  221 (340)
                      |+|+||+..+..+.
T Consensus        76 i~v~~A~~~sd~~~   89 (96)
T 2diu_A           76 IIVSFTPKNRELCE   89 (96)
T ss_dssp             CEEESSCCSCCCCC
T ss_pred             EEEEecCCCcceeE
Confidence            99999998876543

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.67  E-value=1.8e-16  Score=127.03  Aligned_cols=79  Identities=20%  Similarity=0.325  Sum_probs=69.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      +..|+  |+||+.++|+++|+++|++||.|++|+|..++   +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.
T Consensus         5 ~~~lf--V~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~-afV~f~~~~~A~~Ai~~l~~~~~~g~---~i~V~   78 (115)
T 4f25_A            5 SGNIF--IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVG   78 (115)
T ss_dssp             CCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred             CCEEE--ECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCce-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence            34555  99999999999999999999999999987543   355 99999999999999999999999998   99999


Q ss_pred             eecCCCCc
Q 019494          212 YSRHTDLS  219 (340)
Q Consensus       212 ~ak~~~~~  219 (340)
                      +++.+..+
T Consensus        79 ~a~~~~~~   86 (115)
T 4f25_A           79 RFKSRKER   86 (115)
T ss_dssp             ESSCCCC-
T ss_pred             ECCCcccc
Confidence            99876543

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.66  E-value=6.7e-16  Score=120.99  Aligned_cols=77  Identities=25%  Similarity=0.486  Sum_probs=69.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|++|++.+   ++ |||+|.+.++|.+|++.|||..|.++   .|+|.|+
T Consensus        10 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a   80 (103)
T 2dgu_A           10 KVKVLF--VRNLANTVTEEILEKAFSQFGKLERVKKLK---DY-AFIHFDERDGAVKAMEEMNGKDLEGE---NIEIVFA   80 (103)
T ss_dssp             CCCCEE--EECCCTTCCHHHHHHHHHHHSCEEEEEECS---SC-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEEEC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CE-EEEEeCCHHHHHHHHHHHCCCccCCC---EEEEEEc
Confidence            456666  899999999999999999999999999873   44 99999999999999999999999998   9999999


Q ss_pred             cCCCCc
Q 019494          214 RHTDLS  219 (340)
Q Consensus       214 k~~~~~  219 (340)
                      +.....
T Consensus        81 ~~~~~~   86 (103)
T 2dgu_A           81 KPPDQK   86 (103)
T ss_dssp             CCCCCC
T ss_pred             CCCccc
Confidence            877654

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.65  E-value=5.7e-16  Score=123.25  Aligned_cols=80  Identities=13%  Similarity=0.159  Sum_probs=70.8

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ++.++|+  |+||++++|+++|+++|++||.|++|+|+.+.     +|+ |||+|++.++|.+|++.|||..|.|+   .
T Consensus         4 ~p~~~lf--V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-aFV~f~~~~~A~~Ai~~lng~~~~gr---~   77 (110)
T 3s8s_A            4 IPLKEVT--FARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGL-ARVLFTSTRGAKETVKNLHLTSVMGN---I   77 (110)
T ss_dssp             SCCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---E
T ss_pred             CCCcEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence            3566777  89999999999999999999999999987532     465 99999999999999999999999999   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|.+++....
T Consensus        78 i~V~~a~~~~~   88 (110)
T 3s8s_A           78 IHAQLDIKGQQ   88 (110)
T ss_dssp             CEEEECSTTHH
T ss_pred             EEEEECCCCcH
Confidence            99999976643

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.65  E-value=2.5e-16  Score=123.63  Aligned_cols=76  Identities=16%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             CCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC--eeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~--~i~~~~~~~l~v  210 (340)
                      ++++|+  |+||++ .+|+++|+++|++||+|++|+|.+.+ |+ |||+|++.++|.+|++.||+.  .|.|+   .|+|
T Consensus        14 p~~~l~--V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V   86 (102)
T 1x4d_A           14 TRRVVH--IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NE-AFIEMATTEDAQAAVDYYTTTPALVFGK---PVRV   86 (102)
T ss_dssp             CCCEEE--EESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SC-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred             CCCEEE--EeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHHcCCCceECCc---EEEE
Confidence            577877  899999 99999999999999999999998755 65 999999999999999999975  48998   9999


Q ss_pred             EeecCC
Q 019494          211 SYSRHT  216 (340)
Q Consensus       211 ~~ak~~  216 (340)
                      .||+..
T Consensus        87 ~~a~~~   92 (102)
T 1x4d_A           87 HLSQKY   92 (102)
T ss_dssp             EEECCC
T ss_pred             EECCCC
Confidence            999854

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.64  E-value=2.7e-16  Score=122.69  Aligned_cols=74  Identities=18%  Similarity=0.248  Sum_probs=65.5

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      -++|||+|++.+  |++|+++|++||+|.+|.+.+    +.+++||||+|.+.++|++|++.|||..|         .|+
T Consensus        19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---------~gr   89 (99)
T 4fxv_A           19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL---------QSK   89 (99)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE---------CCE
Confidence            468999999854  999999999999999998876    23567899999999999999999999985         699


Q ss_pred             eEEEeeccC
Q 019494           81 TLRITYSAH   89 (340)
Q Consensus        81 ~l~v~~s~~   89 (340)
                      +|+|+||+.
T Consensus        90 ~l~V~~AkP   98 (99)
T 4fxv_A           90 TIKVSYARP   98 (99)
T ss_dssp             ECEEEECCB
T ss_pred             EEEEEEeeC
Confidence            999999874

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.64  E-value=6.1e-16  Score=116.51  Aligned_cols=75  Identities=19%  Similarity=0.391  Sum_probs=67.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|.+|++...     .+|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus         6 ~~~~l~--V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l   79 (85)
T 3mdf_A            6 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---TI   79 (85)
T ss_dssp             CSSEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred             CCCEEE--EECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence            466777  8999999999999999999999999998643     2465 99999999999999999999999998   99


Q ss_pred             EEEeec
Q 019494          209 HISYSR  214 (340)
Q Consensus       209 ~v~~ak  214 (340)
                      +|+|||
T Consensus        80 ~v~~ak   85 (85)
T 3mdf_A           80 RVNLAK   85 (85)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999986

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=1.9e-15  Score=118.29  Aligned_cols=80  Identities=19%  Similarity=0.372  Sum_probs=71.4

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|++|+|...   ++|+ |||+|.+.++|.+|++.|||..|.++   .|+|
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V   87 (103)
T 2cqi_A           14 QPRTLY--VGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY-CFVEFYEHRDAAAALAAMNGRKILGK---EVKV   87 (103)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEE
T ss_pred             CCCEEE--EeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCE-EEEEECCHHHHHHHHHHhCCCCcCCC---eEEE
Confidence            466767  8999999999999999999999999998764   3465 99999999999999999999999998   9999


Q ss_pred             EeecCCCCc
Q 019494          211 SYSRHTDLS  219 (340)
Q Consensus       211 ~~ak~~~~~  219 (340)
                      .|++....+
T Consensus        88 ~~a~~~~~~   96 (103)
T 2cqi_A           88 NWATTPSSQ   96 (103)
T ss_dssp             EECCCTTCC
T ss_pred             EECCCCccc
Confidence            999886543

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=116.29  Aligned_cols=76  Identities=16%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++++|+  |+||+.++|+++|+++|++||.|++|++.   +|+ |||+|.+.++|.+|++.|||..|.++   .|+|+|+
T Consensus         7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a   77 (90)
T 2dnq_A            7 GMVKLF--IGNLPREATEQEIRSLFEQYGKVLECDII---KNY-GFVHIEDKTAAEDAIRNLHHYKLHGV---NINVEAS   77 (90)
T ss_dssp             CCEEEE--EESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTE-EEEEESSHHHHHHHHHHHTTCBCSSC---BCEEECS
T ss_pred             CCeEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHhcCCccCCc---EEEEEEC
Confidence            456666  89999999999999999999999999988   354 99999999999999999999999999   9999998


Q ss_pred             cCCCC
Q 019494          214 RHTDL  218 (340)
Q Consensus       214 k~~~~  218 (340)
                      +....
T Consensus        78 ~~~~~   82 (90)
T 2dnq_A           78 KNKSK   82 (90)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            77553

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=1.4e-15  Score=118.10  Aligned_cols=79  Identities=24%  Similarity=0.375  Sum_probs=70.4

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+..+|+++|+++|+.||.|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus         7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l   80 (99)
T 1whw_A            7 GSGRLF--VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGF-AFVTFMFPEHAVKAYAEVDGQVFQGR---ML   80 (99)
T ss_dssp             SCEEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSE-EEEEESSHHHHHHHHHHTTTEESSSC---EE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence            466666  89999999999999999999999999986532     465 99999999999999999999999999   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.|++.+..
T Consensus        81 ~V~~a~~~~~   90 (99)
T 1whw_A           81 HVLPSTIKKE   90 (99)
T ss_dssp             EEEECCCCST
T ss_pred             EEEEcCCCcc
Confidence            9999987654

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=2.4e-15  Score=118.97  Aligned_cols=76  Identities=9%  Similarity=0.147  Sum_probs=69.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCC-----CCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD-----GGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~-----~~~~~l~  209 (340)
                      ...|+  |.||++++|+++|+++|++||+|+.|+|..+  |+ |||+|.+.++|.+|++.|||..|.+     +   .|+
T Consensus        15 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~---~i~   86 (108)
T 1x4c_A           15 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHEGETA---YIR   86 (108)
T ss_dssp             CCEEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TE-EEEEESSHHHHHHHHHHSSSEEEECTTSCEE---EEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CE-EEEEECCHHHHHHHHHHHCcCCccCCcCcce---EEE
Confidence            45566  8999999999999999999999999999876  65 9999999999999999999999999     7   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |++++++..
T Consensus        87 V~~a~~~~~   95 (108)
T 1x4c_A           87 VKVDGPRSP   95 (108)
T ss_dssp             EEESSCCSC
T ss_pred             EEeCCCCCC
Confidence            999987543

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=8.8e-16  Score=119.87  Aligned_cols=81  Identities=17%  Similarity=0.366  Sum_probs=71.6

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      .++++|+  |.||+..+|+++|+++|++||.|++|+|..+     .+|+ |||+|.+.++|.+|++.|||..|.++   .
T Consensus        10 ~~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~   83 (102)
T 2cqb_A           10 TTKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---T   83 (102)
T ss_dssp             CCCSCEE--EESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSE-EEECCSSHHHHHHHHHHHTTEEETTE---E
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---E
Confidence            3466777  8999999999999999999999999998654     3565 99999999999999999999999998   9


Q ss_pred             EEEEeecCCCCc
Q 019494          208 LHISYSRHTDLS  219 (340)
Q Consensus       208 l~v~~ak~~~~~  219 (340)
                      |+|.|++....+
T Consensus        84 l~V~~a~~~~~~   95 (102)
T 2cqb_A           84 IRVNLAKPMRIK   95 (102)
T ss_dssp             EEEEECCCCCCC
T ss_pred             EEEEeCCCCCCC
Confidence            999999876543

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.63  E-value=7.1e-16  Score=131.34  Aligned_cols=140  Identities=16%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             EEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCC
Q 019494           48 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLD  127 (340)
Q Consensus        48 VeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (340)
                      .+|.+.++|..|+..|++....       .+|+.++...+......         .|.........+          ...
T Consensus        11 ee~e~~~d~e~~~~~~~~~~~~-------~kgr~~~~~~~~~~~~~---------~~~~~~~s~~~~----------~~~   64 (165)
T 1rk8_A           11 EEFEVDEDGDQGIVRLKEKAKH-------RKGRGFGSDSNTREAIH---------SYERVRNEDDDE----------LEP   64 (165)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhccccccccchhhcccccc-------ccCCCCCCCcccccccc---------CccccccCCCCC----------CCC
Confidence            7899999999999999987642       34555555543321100         000000000000          000


Q ss_pred             CCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494          128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYD  202 (340)
Q Consensus       128 ~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~  202 (340)
                      ......++++|+  |.||+..+|+++|+++|+.||.|..|.|...+     +|+ |||+|.+.++|.+|++.|||..|.|
T Consensus        65 ~~~~~~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g  141 (165)
T 1rk8_A           65 GPQRSVEGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMG  141 (165)
T ss_dssp             -CCCCC-CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCCCCCCEEE--EeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence            011122356666  89999999999999999999999999987642     455 9999999999999999999999999


Q ss_pred             CCccEEEEEeecCCCCc
Q 019494          203 GGFCKLHISYSRHTDLS  219 (340)
Q Consensus       203 ~~~~~l~v~~ak~~~~~  219 (340)
                      +   .|+|.|++.....
T Consensus       142 ~---~l~V~~a~~~~~~  155 (165)
T 1rk8_A          142 Q---TIQVDWCFVKGPK  155 (165)
T ss_dssp             E---ECEEEESEECC--
T ss_pred             E---EEEEEEecCCCCC
Confidence            8   9999999876543

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=3.4e-16  Score=123.19  Aligned_cols=78  Identities=19%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC--CCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG--RSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng--~~i~~~~~~~~~~~~~   81 (340)
                      +...|||++++.  +|+||+++|++||+|.+|++++  +++||||+|.+.++|++|++.|++  ..         +.|++
T Consensus        15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~---------l~Gr~   83 (105)
T 1sjq_A           15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPV---------LRGQP   83 (105)
T ss_dssp             CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCE---------ETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCce---------ECCEE
Confidence            457889999885  4899999999999999999886  467899999999999999999975  44         47999


Q ss_pred             EEEeeccCCcccc
Q 019494           82 LRITYSAHTDLSV   94 (340)
Q Consensus        82 l~v~~s~~~~l~~   94 (340)
                      |+|+|++.+.+..
T Consensus        84 l~V~~A~~~~~~~   96 (105)
T 1sjq_A           84 IYIQFSNHKELKT   96 (105)
T ss_dssp             CCBCCCSSSSCCC
T ss_pred             EEEEEcCCCCCCc
Confidence            9999999776543

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.63  E-value=9.7e-16  Score=115.92  Aligned_cols=76  Identities=11%  Similarity=0.267  Sum_probs=67.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +.+|+  |+||+.++|+++|+++|++||.|.+|++....     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus         6 ~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~   79 (87)
T 3bs9_A            6 HFHVF--VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QIR   79 (87)
T ss_dssp             CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             ceEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---EEE
Confidence            55556  89999999999999999999999999987642     355 99999999999999999999999998   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |+|++.+
T Consensus        80 v~~a~~k   86 (87)
T 3bs9_A           80 TNWATRK   86 (87)
T ss_dssp             EEEEC--
T ss_pred             EEecCCC
Confidence            9999764

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.63  E-value=1e-15  Score=118.24  Aligned_cols=79  Identities=27%  Similarity=0.419  Sum_probs=70.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+..+|+++|+++|++||.|.+|+|...+     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus         2 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~   75 (96)
T 2x1f_A            2 SRVVY--LGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY-AFIEFRDLESSASAVRNLNGYQLGSR---FLK   75 (96)
T ss_dssp             CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             CcEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEE
Confidence            56666  88999999999999999999999999987542     465 99999999999999999999999998   999


Q ss_pred             EEeecCCCCc
Q 019494          210 ISYSRHTDLS  219 (340)
Q Consensus       210 v~~ak~~~~~  219 (340)
                      |.|++.+...
T Consensus        76 V~~a~~~~~~   85 (96)
T 2x1f_A           76 CGYSSNSDIS   85 (96)
T ss_dssp             EEECSCSSGG
T ss_pred             EEEcCCCCCC
Confidence            9999887654

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=3.3e-15  Score=116.83  Aligned_cols=80  Identities=16%  Similarity=0.350  Sum_probs=71.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|++|+|..+.   +|+ |||+|.+.++|.+|++.|||..|.++   .|+|
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v   87 (103)
T 2cq3_A           14 TPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEV   87 (103)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence            456666  89999999999999999999999999988643   465 99999999999999999999999998   9999


Q ss_pred             EeecCCCCc
Q 019494          211 SYSRHTDLS  219 (340)
Q Consensus       211 ~~ak~~~~~  219 (340)
                      .|++.+...
T Consensus        88 ~~a~~~~~~   96 (103)
T 2cq3_A           88 NNATARVMT   96 (103)
T ss_dssp             EECCSSCCC
T ss_pred             EEcccCCCC
Confidence            999876543

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=1.6e-15  Score=118.37  Aligned_cols=80  Identities=14%  Similarity=0.391  Sum_probs=71.3

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      .++++|+  |.||+.++|+++|+++|++||.|++|+|...     .+|+ |||+|.+.++|.+|++.|||..|.++   .
T Consensus        10 ~~~~~l~--v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~   83 (102)
T 1x5s_A           10 SDEGKLF--VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGF-GFVTFENIDDAKDAMMAMNGKSVDGR---Q   83 (102)
T ss_dssp             CCCSEEE--EESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSE-EEEECSSHHHHHHHHHHHTTCCTTSC---C
T ss_pred             CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence            3467777  8999999999999999999999999998763     2465 99999999999999999999999998   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|+|++....
T Consensus        84 l~v~~a~~~~~   94 (102)
T 1x5s_A           84 IRVDQAGKSSD   94 (102)
T ss_dssp             CEEEEEECCCC
T ss_pred             EEEEECCCCCC
Confidence            99999987654

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.9e-15  Score=116.13  Aligned_cols=76  Identities=21%  Similarity=0.439  Sum_probs=68.3

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      +++++|+  |.||+..+|+++|+++|++||.|++|++...     .+|+ |||+|.+.++|.+|++.|||..|.++   .
T Consensus        14 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~   87 (94)
T 2e5h_A           14 PSKSTVY--VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGV-AFILFLDKDSAQNCTRAINNKQLFGR---V   87 (94)
T ss_dssp             CCTTSEE--EESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTC-EEEEESCHHHHHHHHHHTTTEEETTE---E
T ss_pred             CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHcCCCeeCCc---E
Confidence            3466777  8899999999999999999999999998753     2465 99999999999999999999999998   9


Q ss_pred             EEEEeec
Q 019494          208 LHISYSR  214 (340)
Q Consensus       208 l~v~~ak  214 (340)
                      |+|+|||
T Consensus        88 l~v~~ak   94 (94)
T 2e5h_A           88 IKASIAI   94 (94)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999986

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.63  E-value=1.5e-15  Score=117.52  Aligned_cols=77  Identities=21%  Similarity=0.374  Sum_probs=69.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeC--CCCccEEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHIS  211 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~--~~~~~~l~v~  211 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|++|.+... +|+ |||+|.+.++|.+|++.|||..|.  ++   .|+|+
T Consensus        16 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-afV~f~~~~~A~~A~~~l~g~~~~~~g~---~l~V~   88 (97)
T 1why_A           16 PTTRLW--VGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSF-AYIQYESLDAAQAACAKMRGFPLGGPDR---RLRVD   88 (97)
T ss_dssp             CCSCEE--EECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCC-EEEEESSHHHHHHHHHHHTTCBCSSSSC---BCEEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCE-EEEEECCHHHHHHHHHHHCCCEeCCCCc---EEEEE
Confidence            466777  8999999999999999999999999999876 465 999999999999999999999999  77   99999


Q ss_pred             eecCCC
Q 019494          212 YSRHTD  217 (340)
Q Consensus       212 ~ak~~~  217 (340)
                      |++++.
T Consensus        89 ~a~~~~   94 (97)
T 1why_A           89 FAKSGP   94 (97)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            988754

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.63  E-value=5.4e-16  Score=123.62  Aligned_cols=78  Identities=9%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             CCCcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC--CeeCCCCccEEE
Q 019494          133 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLH  209 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng--~~i~~~~~~~l~  209 (340)
                      .++++|+  |+||+++ +|+++|+++|++||+|++|+|.+. +|+ |||+|++.++|.+|++.||+  ..|.|+   .|+
T Consensus        23 ~p~~~l~--V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-kg~-aFVef~~~~~A~~Ai~~l~~~~~~l~Gr---~l~   95 (112)
T 1x4f_A           23 ELGRVIH--LSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-KSQ-AFIEMETREDAMAMVDHCLKKALWFQGR---CVK   95 (112)
T ss_dssp             CCCCEEE--EESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-TTE-EEEECSSHHHHHHHHHHHHHSCCCSSSS---CCE
T ss_pred             CCCCEEE--EeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-CCE-EEEEECCHHHHHHHHHHhccCCceECCE---EEE
Confidence            3577877  8999998 999999999999999999999865 465 99999999999999999875  458898   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |+|++...
T Consensus        96 V~~a~~~~  103 (112)
T 1x4f_A           96 VDLSEKYK  103 (112)
T ss_dssp             EEEECSCS
T ss_pred             EEECcccc
Confidence            99997654

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.63  E-value=1.9e-15  Score=117.47  Aligned_cols=78  Identities=17%  Similarity=0.366  Sum_probs=70.6

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      .++++|+  |.||+..+|+++|+++|++||.|++|++.+.+ |+ |||+|.+.++|.+|++.|||..|.++   .|+|.|
T Consensus        13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~   85 (99)
T 2cpj_A           13 TQRSRLF--VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-GF-GFIRLETRTLAEIAKVELDNMPLRGK---QLRVRF   85 (99)
T ss_dssp             CCTTEEE--EESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-TE-EEEECSSSHHHHHHHHHHTTCCBTTB---CCEEEE
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CE-EEEEECCHHHHHHHHHHhCCCEeCCc---eEEEEE
Confidence            3467777  89999999999999999999999999998654 65 99999999999999999999999998   999999


Q ss_pred             ecCCC
Q 019494          213 SRHTD  217 (340)
Q Consensus       213 ak~~~  217 (340)
                      ++.+.
T Consensus        86 a~~~~   90 (99)
T 2cpj_A           86 ACHSA   90 (99)
T ss_dssp             SSCCS
T ss_pred             cCCCC
Confidence            88754

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.63  E-value=9.8e-16  Score=120.69  Aligned_cols=81  Identities=12%  Similarity=0.136  Sum_probs=68.8

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..|...|||++++.  +|+||+++|++||+|.+|++++  .++||||+|.+.++|.+|++.|++..+.       +.|++
T Consensus        12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------i~Gr~   82 (104)
T 1wex_A           12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVY-------IAGQQ   82 (104)
T ss_dssp             CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCB-------SSSSB
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCEE
Confidence            34667899999885  4899999999999999999876  4678999999999999999999876532       57999


Q ss_pred             EEEeeccCCccc
Q 019494           82 LRITYSAHTDLS   93 (340)
Q Consensus        82 l~v~~s~~~~l~   93 (340)
                      |+|+|++.+.+.
T Consensus        83 l~V~~a~~~~~~   94 (104)
T 1wex_A           83 AFFNYSTSKRIT   94 (104)
T ss_dssp             CEEEECSSSSCC
T ss_pred             EEEEEccCcccc
Confidence            999999977543

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.62  E-value=4.6e-16  Score=122.09  Aligned_cols=76  Identities=12%  Similarity=0.043  Sum_probs=66.0

Q ss_pred             cccccccCCCCCC-C--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            5 WPLSRKYLQWQLS-A--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         5 ~~~~~~~l~~~~~-~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      .|...|||+|++. +  |+||+++|++||+|.+|++++  +++||||+|.+.++|.+|++.||+....       +.|++
T Consensus        13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------~~Gr~   83 (102)
T 1x4d_A           13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPAL-------VFGKP   83 (102)
T ss_dssp             CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCE-------ETTEE
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCce-------ECCcE
Confidence            4667899999998 4  899999999999999999886  3468999999999999999999976421       47999


Q ss_pred             EEEeeccC
Q 019494           82 LRITYSAH   89 (340)
Q Consensus        82 l~v~~s~~   89 (340)
                      |+|+|++.
T Consensus        84 l~V~~a~~   91 (102)
T 1x4d_A           84 VRVHLSQK   91 (102)
T ss_dssp             CEEEEECC
T ss_pred             EEEEECCC
Confidence            99999984

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.62  E-value=3.4e-16  Score=125.03  Aligned_cols=101  Identities=17%  Similarity=0.182  Sum_probs=84.8

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      .+..+|||++++.  +|++|+++|+.||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..|         .|+.
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~   76 (115)
T 3lqv_A            6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV---------SNRY   76 (115)
T ss_dssp             TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS---------SSCB
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeE
Confidence            3567899999985  4899999999999999998876 34567899999999999999999999984         6999


Q ss_pred             EEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019494           82 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF  161 (340)
Q Consensus        82 l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f  161 (340)
                      |+|+|++.+..                                                 ..+++...++++|.++|++|
T Consensus        77 l~v~~a~~~~~-------------------------------------------------~~~~~~~~~~~~l~~~~~~~  107 (115)
T 3lqv_A           77 LVVLYYNANRA-------------------------------------------------FQKMDTKKKEEQLKLLKEKY  107 (115)
T ss_dssp             CEEEECCHHHH-------------------------------------------------TTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCChh-------------------------------------------------hhhhhHhHhHHHHHHHHHHh
Confidence            99999875421                                                 13556678899999999999


Q ss_pred             CC
Q 019494          162 GP  163 (340)
Q Consensus       162 G~  163 (340)
                      |-
T Consensus       108 g~  109 (115)
T 3lqv_A          108 GI  109 (115)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=6.1e-16  Score=124.60  Aligned_cols=82  Identities=18%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..+...|||++++.  +|+||+++|++||+|.+|++++.  ++||||+|.+.++|.+|++.|++..+.       +.|++
T Consensus        28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~-------l~Gr~   98 (119)
T 2ad9_A           28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPV-------LRGQP   98 (119)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCC-------BTTBC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCce-------ECCeE
Confidence            45677899999884  48999999999999999998863  578999999999999999999853211       57999


Q ss_pred             EEEeeccCCcccc
Q 019494           82 LRITYSAHTDLSV   94 (340)
Q Consensus        82 l~v~~s~~~~l~~   94 (340)
                      |+|+|++.+.+..
T Consensus        99 l~V~~a~~k~~~~  111 (119)
T 2ad9_A           99 IYIQFSNHKELKT  111 (119)
T ss_dssp             CEEEECSSSSCCC
T ss_pred             EEEEEccCCCCCc
Confidence            9999999876653

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.62  E-value=2.7e-16  Score=120.70  Aligned_cols=77  Identities=21%  Similarity=0.352  Sum_probs=66.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccC-CeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhc-CCeeCCCCccE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCK  207 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~ln-g~~i~~~~~~~  207 (340)
                      |++|+  |+|||.++|+++|+++|+.|| +|++|+|..+     ++|+ |||+|.+.++|.+|++.|+ +..|.|+   .
T Consensus         1 S~~i~--v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~-aFV~F~~~~~A~~Ai~~~~~~~~~~gr---~   74 (91)
T 2lxi_A            1 SNIVM--LRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGF-AFVEFSHLQDATRWMEANQHSLNILGQ---K   74 (91)
T ss_dssp             CCEEE--EETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSE-EEEECSSHHHHHHHHHTTTTEEEETTE---E
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHhcCCCeEECCE---E
Confidence            34666  899999999999999999999 8999988643     3576 9999999999999999875 5678888   9


Q ss_pred             EEEEeecCCC
Q 019494          208 LHISYSRHTD  217 (340)
Q Consensus       208 l~v~~ak~~~  217 (340)
                      |+|+||+++.
T Consensus        75 i~V~~a~~~~   84 (91)
T 2lxi_A           75 VSMHYSDPKP   84 (91)
T ss_dssp             EEEECCCSCC
T ss_pred             EEEEEcCCCC
Confidence            9999998754

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.62  E-value=4.5e-16  Score=117.79  Aligned_cols=75  Identities=16%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      |.++.|||+|+..  ||++|+++|++||+|.++.+..  +++||||+|.|.++|++|++.|||..+         .|++|
T Consensus         5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l---------~gr~I   73 (89)
T 2wbr_A            5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVL---------ANTTI   73 (89)
T ss_dssp             CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred             CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEE---------CCcEE
Confidence            6788899999984  4899999999999999998865  567899999999999999999999884         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++..
T Consensus        74 ~V~~A~e~   81 (89)
T 2wbr_A           74 FAESPSEN   81 (89)
T ss_dssp             EEECCCHH
T ss_pred             EEEECCHH
Confidence            99998643

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2.6e-15  Score=115.57  Aligned_cols=78  Identities=22%  Similarity=0.410  Sum_probs=70.0

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|++|++..++     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus         4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l   77 (95)
T 2dnz_A            4 GSSGLY--VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGY-GFITFSDSECARRALEQLNGFELAGR---PM   77 (95)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHhCCCeeCCc---EE
Confidence            466777  88999999999999999999999999987642     465 99999999999999999999999999   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|+|++.+.
T Consensus        78 ~V~~a~~~~   86 (95)
T 2dnz_A           78 RVGHVTERL   86 (95)
T ss_dssp             EEEESSCCC
T ss_pred             EEEEccccc
Confidence            999987654

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.62  E-value=1.8e-15  Score=117.97  Aligned_cols=74  Identities=20%  Similarity=0.369  Sum_probs=68.6

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      |+|+||+.++|+++|+++|++||+|++|++..+++|+ |||+|.+.++|.+|++.|||..+.|+   .|+|+|++...
T Consensus         3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~~~~   76 (101)
T 2hvz_A            3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGF-AFVEFEDPRDAEDAVRGLDGKVICGS---RVRVELSTGMP   76 (101)
T ss_dssp             EEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSE-EEEECSSHHHHHHHHHHHHHSCSSSC---CCEEEESSSCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCE-EEEEECCHHHHHHHHHHHCCCeECCc---EEEEEEccCCC
Confidence            4489999999999999999999999999998765675 99999999999999999999999999   99999998765

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=1.9e-15  Score=116.92  Aligned_cols=77  Identities=19%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             CcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          135 SNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      .+.|+  |+||+..+|+++|+    ++|++||.|++|+|..++  +|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus         9 ~~~l~--V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~-afV~f~~~~~A~~Ai~~l~g~~~~gr---~l   82 (96)
T 2dgx_A            9 GADVQ--VSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLK-AVVQMENLQDAIGAVNSLHRYKIGSK---KI   82 (96)
T ss_dssp             CEEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCC-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence            44555  99999999999999    999999999999997543  566 99999999999999999999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|+++++..
T Consensus        83 ~V~~a~~~~   91 (96)
T 2dgx_A           83 LVSLATGAS   91 (96)
T ss_dssp             EEEECCCSS
T ss_pred             EEEEcCCCC
Confidence            999987654

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.62  E-value=5e-15  Score=118.14  Aligned_cols=80  Identities=10%  Similarity=0.255  Sum_probs=70.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+..+|+++|+++|+.||.|++|+|....     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l   87 (115)
T 2dgo_A           14 NHFHVF--VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QI   87 (115)
T ss_dssp             TCEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---EC
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence            355666  89999999999999999999999999987653     355 99999999999999999999999998   99


Q ss_pred             EEEeecCCCCc
Q 019494          209 HISYSRHTDLS  219 (340)
Q Consensus       209 ~v~~ak~~~~~  219 (340)
                      +|.|++.....
T Consensus        88 ~V~~a~~~~~~   98 (115)
T 2dgo_A           88 RTNWATRKPPA   98 (115)
T ss_dssp             EEEESSCCCCC
T ss_pred             EEEEccCCCCC
Confidence            99999876543

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3.7e-15  Score=115.68  Aligned_cols=78  Identities=22%  Similarity=0.314  Sum_probs=69.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|++|+|..+     .+|+ |||+|.+.++|.+|++ ||+..|.++   .|
T Consensus         9 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~l   81 (99)
T 2dgs_A            9 KSNKIF--VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF-GFITFEDEQSVDQAVN-MHFHDIMGK---KV   81 (99)
T ss_dssp             SCCEEE--EESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSE-EEEEESSHHHHHHHHH-HCCCBSSSC---BC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCce-EEEEECCHHHHHHHHH-hCCCEECCe---EE
Confidence            466767  8999999999999999999999999998754     3565 9999999999999998 999999999   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.|++++..
T Consensus        82 ~V~~a~~~~~   91 (99)
T 2dgs_A           82 EVKRAEPRDS   91 (99)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCcc
Confidence            9999987654

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.61  E-value=2.3e-15  Score=112.80  Aligned_cols=74  Identities=14%  Similarity=0.242  Sum_probs=66.7

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|+||+.++|+++|+++|+.||.|.+|++....     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+|++
T Consensus         4 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~a~   79 (83)
T 3md1_A            4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWAA   79 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEECC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccce-EEEEECCHHHHHHHHHHhcCCeeCCc---EEEEEecC
Confidence            4599999999999999999999999999987542     355 99999999999999999999999998   99999998


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ++.
T Consensus        80 ~~~   82 (83)
T 3md1_A           80 KLE   82 (83)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            653

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.9e-15  Score=113.88  Aligned_cols=74  Identities=23%  Similarity=0.356  Sum_probs=67.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHh-cCCeeCCCCccEEEEEe
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCKLHISY  212 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~l-ng~~i~~~~~~~l~v~~  212 (340)
                      ++++|+  |+||+.++|+++|+++|++||.|.+|++...+ |+ |||+|.+.++|.+|++.| ||..+.|+   .|+|+|
T Consensus        11 ~~~~l~--V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-g~-afV~f~~~~~A~~a~~~l~~~~~~~g~---~l~v~~   83 (85)
T 2ytc_A           11 TITTLY--VGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-QC-AFIQFATRQAAEVAAEKSFNKLIVNGR---RLNVKW   83 (85)
T ss_dssp             SCCCEE--EECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHTTTTTCEETTE---ECCEEE
T ss_pred             CccEEE--EcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-CE-EEEEECCHHHHHHHHHHhcCCeeECCC---EEEEEe
Confidence            456666  89999999999999999999999999998754 54 999999999999999999 99999998   999999


Q ss_pred             ec
Q 019494          213 SR  214 (340)
Q Consensus       213 ak  214 (340)
                      +|
T Consensus        84 ak   85 (85)
T 2ytc_A           84 GR   85 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.61  E-value=2.1e-15  Score=123.11  Aligned_cols=81  Identities=26%  Similarity=0.319  Sum_probs=71.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          134 ESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ++++|+  |+||++.+++++|+    ++|++||.|++|.+..  +.+|+ |||+|.+.++|.+|++.|||..|.|+   .
T Consensus        28 p~~~Lf--V~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~-aFV~F~~~~~A~~Ai~~lng~~l~gr---~  101 (127)
T 2a3j_A           28 PSQVVL--ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGK-AYIVFATQESAQAFVEAFQGYPFQGN---P  101 (127)
T ss_dssp             CCSEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCC-EEEEESSHHHHHHHHHHSTTCCCTTS---C
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCE-EEEEECCHHHHHHHHHHHCCCEeCCC---E
Confidence            467777  89999999999876    7999999999998864  34676 99999999999999999999999999   9


Q ss_pred             EEEEeecCCCCcc
Q 019494          208 LHISYSRHTDLSI  220 (340)
Q Consensus       208 l~v~~ak~~~~~~  220 (340)
                      |+|+|++.+...+
T Consensus       102 l~V~~a~~~~~~~  114 (127)
T 2a3j_A          102 LVITFSETPQSQV  114 (127)
T ss_dssp             CEEEECCCCCHHH
T ss_pred             EEEEEccCcchhc
Confidence            9999999876544

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.61  E-value=3.9e-15  Score=117.07  Aligned_cols=79  Identities=19%  Similarity=0.400  Sum_probs=70.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHh-cCCeeCCCCcc
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFC  206 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~l-ng~~i~~~~~~  206 (340)
                      ++++|+  |.||+..+|+++|+++|+.||.|++|+|..+      .+|+ |||+|.+.++|.+|++.| ||..|.++   
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~~g~---   87 (107)
T 2cph_A           14 TTSKIL--VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGF-GFVDFITKQDAKKAFNALCHSTHLYGR---   87 (107)
T ss_dssp             CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSE-EEEEESSHHHHHHHHHHHHTCCBSSSC---
T ss_pred             CCCEEE--EeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCce-EEEEECCHHHHHHHHHHhccCCeECCC---
Confidence            456666  8999999999999999999999999998765      2565 999999999999999999 99999998   


Q ss_pred             EEEEEeecCCCC
Q 019494          207 KLHISYSRHTDL  218 (340)
Q Consensus       207 ~l~v~~ak~~~~  218 (340)
                      .|+|.|++....
T Consensus        88 ~l~v~~a~~~~~   99 (107)
T 2cph_A           88 RLVLEWADSEVT   99 (107)
T ss_dssp             BCEEEECCCCCC
T ss_pred             EEEEEeCCCCCC
Confidence            999999987653

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=3.3e-15  Score=116.21  Aligned_cols=78  Identities=22%  Similarity=0.396  Sum_probs=69.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++++|+  |.||+.++|+++|+++|+.||.|++|+|...+    +|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus        16 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~   89 (100)
T 2do4_A           16 EKHKLF--ISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGL-AYVEYENESQASQAVMKMDGMTIKEN---IIK   89 (100)
T ss_dssp             CCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeE-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence            356666  89999999999999999999999999987644    354 99999999999999999999999999   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.|++++.
T Consensus        90 v~~a~~~~   97 (100)
T 2do4_A           90 VAISNSGP   97 (100)
T ss_dssp             EEECCCCS
T ss_pred             EEECCCCC
Confidence            99998764

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.61  E-value=4e-15  Score=116.71  Aligned_cols=80  Identities=16%  Similarity=0.286  Sum_probs=70.8

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCC---CCcc
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYD---GGFC  206 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~---~~~~  206 (340)
                      ++++|+  |+||+.++|+++|+++|+.||.|++|+|....    +|+ |||+|.+.++|.+|++.|||..+.+   +   
T Consensus        14 ~~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~gg~~~---   87 (105)
T 2dnh_A           14 RDRKLF--VGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGC-AFVKFSSHTEAQAAIHALHGSQTMPGASS---   87 (105)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEE-EEEEESSHHHHHHHHHHHSSCCCCTTCSS---
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcE-EEEEeCCHHHHHHHHHHHcCCccCCCCCc---
Confidence            466777  89999999999999999999999999987653    354 9999999999999999999999998   6   


Q ss_pred             EEEEEeecCCCCc
Q 019494          207 KLHISYSRHTDLS  219 (340)
Q Consensus       207 ~l~v~~ak~~~~~  219 (340)
                      .|+|.|++....+
T Consensus        88 ~l~V~~a~~~~~~  100 (105)
T 2dnh_A           88 SLVVKFADTDKES  100 (105)
T ss_dssp             CCEEEESCSSCCC
T ss_pred             cEEEEECccCccc
Confidence            9999999876643

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=2.8e-15  Score=118.86  Aligned_cols=78  Identities=17%  Similarity=0.348  Sum_probs=70.0

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      .+++|+  |+||+.++|+++|+++|++||+|++|++..++   +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|
T Consensus        28 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V  101 (109)
T 2err_A           28 QPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEV  101 (109)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTE-EEEECCCSHHHHHHHHHHTTCEETTE---ECEE
T ss_pred             CCCEEE--EECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence            456666  89999999999999999999999999987542   565 99999999999999999999999998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      +|++.+.
T Consensus       102 ~~a~~~~  108 (109)
T 2err_A          102 NNATARV  108 (109)
T ss_dssp             EECCCSC
T ss_pred             EECCCCc
Confidence            9998764

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=6e-15  Score=116.64  Aligned_cols=78  Identities=15%  Similarity=0.281  Sum_probs=69.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|+.|+|....  +|+ |||+|.+.++|.+|++.||+..|.++   .|+|+
T Consensus        21 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~   94 (109)
T 1x4a_A           21 NDCRIY--VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF-AFVEFEDPRDAEDAVYGRDGYDYDGY---RLRVE   94 (109)
T ss_dssp             CSSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCC-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence            466777  89999999999999999999999999986532  466 99999999999999999999999998   99999


Q ss_pred             eecCCC
Q 019494          212 YSRHTD  217 (340)
Q Consensus       212 ~ak~~~  217 (340)
                      |++...
T Consensus        95 ~a~~~~  100 (109)
T 1x4a_A           95 FPRSGR  100 (109)
T ss_dssp             CCCCCC
T ss_pred             EcccCC
Confidence            987654

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.61  E-value=6.5e-15  Score=118.13  Aligned_cols=78  Identities=17%  Similarity=0.405  Sum_probs=70.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|++|+|..++    +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|
T Consensus         7 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~V   80 (116)
T 2fy1_A            7 PGKLF--IGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGF-AFITFENPADAKNAAKDMNGKSLHGK---AIKV   80 (116)
T ss_dssp             CCEEE--EECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCE-EEEECSSHHHHHHHHHHCSSCBCSSS---BCEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence            55666  89999999999999999999999999988643    465 99999999999999999999999999   9999


Q ss_pred             EeecCCCC
Q 019494          211 SYSRHTDL  218 (340)
Q Consensus       211 ~~ak~~~~  218 (340)
                      +|++....
T Consensus        81 ~~a~~~~~   88 (116)
T 2fy1_A           81 EQAKKPSF   88 (116)
T ss_dssp             EECCCSSC
T ss_pred             EECCCCCC
Confidence            99987654

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=1.5e-15  Score=119.04  Aligned_cols=81  Identities=20%  Similarity=0.169  Sum_probs=67.4

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..|...|||+|++.  +|+||+++|++||+|.+|++++  .++||||+|.+.++|.+|++.|++..+.       +.|++
T Consensus        12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------~~Gr~   82 (101)
T 2cq1_A           12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPH-------LRNQP   82 (101)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCE-------ETTEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCcE
Confidence            34667899998884  4899999999999999998876  3678999999999999999988643221       57999


Q ss_pred             EEEeeccCCccc
Q 019494           82 LRITYSAHTDLS   93 (340)
Q Consensus        82 l~v~~s~~~~l~   93 (340)
                      |+|+|++.+.+.
T Consensus        83 l~V~~a~~~~~~   94 (101)
T 2cq1_A           83 IYIQYSNHKELK   94 (101)
T ss_dssp             CEEEECSCSSCC
T ss_pred             EEEEEcCcccCc
Confidence            999999977654

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.61  E-value=2.1e-15  Score=115.33  Aligned_cols=78  Identities=15%  Similarity=0.287  Sum_probs=69.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|++|+|..+.   +|+ |||+|.+.++|.+|++.|||..|.++   .|+|
T Consensus         7 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v   80 (92)
T 2dgv_A            7 GACQIF--VRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESPEVAERACRMMNGMKLSGR---EIDV   80 (92)
T ss_dssp             SCCEEE--ECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEE-EEEEESSHHHHHHHHHHHTTCCBTTB---CCCC
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEE
Confidence            466666  89999999999999999999999999987632   355 99999999999999999999999998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      +|++...
T Consensus        81 ~~a~~~~   87 (92)
T 2dgv_A           81 RIDRNAS   87 (92)
T ss_dssp             EECSCCS
T ss_pred             EEcCCCC
Confidence            9988765

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.61  E-value=2.1e-15  Score=133.08  Aligned_cols=79  Identities=20%  Similarity=0.398  Sum_probs=72.8

Q ss_pred             CCcEEEEEeecCC-CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          134 ESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       134 ~s~vl~v~v~nl~-~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      ++++|+  |+||+ +.+|+++|+++|+.||.|++|+|+.+++|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|
T Consensus         3 ~~~~l~--V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~---~l~v~~   76 (205)
T 3tyt_A            3 DSPVLM--VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGA-AMVEMADGYAVDRAITHLNNNFMFGQ---KMNVCV   76 (205)
T ss_dssp             CCSEEE--EECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTC-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred             CCCEEE--EeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCE-EEEEECCHHHHHHHHHHhCCCEECCc---eEEEEE
Confidence            467777  89999 899999999999999999999999877786 99999999999999999999999999   999999


Q ss_pred             ecCCCC
Q 019494          213 SRHTDL  218 (340)
Q Consensus       213 ak~~~~  218 (340)
                      ++....
T Consensus        77 s~~~~~   82 (205)
T 3tyt_A           77 SKQPAI   82 (205)
T ss_dssp             CSCSCC
T ss_pred             ccCCcc
Confidence            987653

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=2.4e-15  Score=115.68  Aligned_cols=76  Identities=22%  Similarity=0.344  Sum_probs=68.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|++|++..++     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        14 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l   87 (95)
T 2cqc_A           14 PNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---RI   87 (95)
T ss_dssp             GGGCEE--EESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence            467777  88999999999999999999999999987532     355 99999999999999999999999998   99


Q ss_pred             EEEeecC
Q 019494          209 HISYSRH  215 (340)
Q Consensus       209 ~v~~ak~  215 (340)
                      +|+|++.
T Consensus        88 ~v~~a~~   94 (95)
T 2cqc_A           88 RVSGPSS   94 (95)
T ss_dssp             EEECCSC
T ss_pred             EEEecCC
Confidence            9999874

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=2.1e-15  Score=116.34  Aligned_cols=79  Identities=24%  Similarity=0.426  Sum_probs=70.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEE-EEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v-~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ++++|+  |.||+..+|+++|+++|+.||.|.+| +|..+     .+|+ |||+|.+.++|.+|++.|||..|.++   .
T Consensus         4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~   77 (96)
T 1x5t_A            4 GSSGIF--IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGY-AFINFASFDASDAAIEAMNGQYLCNR---P   77 (96)
T ss_dssp             CCCEEE--EECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSE-EEEEBSSHHHHHHHHHTTTTCEETTE---E
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence            466777  89999999999999999999999999 88754     2465 99999999999999999999999998   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|+|++.+..
T Consensus        78 l~v~~a~~~~~   88 (96)
T 1x5t_A           78 ITVSYAFKKDS   88 (96)
T ss_dssp             CEEEESCCCCC
T ss_pred             EEEEEecccCC
Confidence            99999987653

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.60  E-value=4.3e-15  Score=115.28  Aligned_cols=75  Identities=23%  Similarity=0.320  Sum_probs=68.0

Q ss_pred             CCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          133 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      +++++|+  |+||+. ++|+++|+++|+.||.|.+|++.   +|+ |||+|.+.++|.+|++.|||..+.|+   .|+|+
T Consensus        20 ~~~~~l~--V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~   90 (97)
T 2xnq_A           20 HMKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIEXESQEMNFGK---KLILE   90 (97)
T ss_dssp             CTTCEEE--EESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHTTSEETTE---ECEEE
T ss_pred             CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence            3577777  899998 99999999999999999999884   465 99999999999999999999999998   99999


Q ss_pred             eecCC
Q 019494          212 YSRHT  216 (340)
Q Consensus       212 ~ak~~  216 (340)
                      |++..
T Consensus        91 ~a~~~   95 (97)
T 2xnq_A           91 VSSSN   95 (97)
T ss_dssp             ECCCC
T ss_pred             ecCCC
Confidence            98764

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.60  E-value=2.2e-15  Score=116.71  Aligned_cols=78  Identities=27%  Similarity=0.453  Sum_probs=69.1

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|++|+|..+.        +|+ |||+|.+.++|.+|++.|||..|.++  
T Consensus         4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~--   78 (98)
T 2cpf_A            4 GSSGLF--IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF-GFVEYKKPEQAQKALKQLQGHTVDGH--   78 (98)
T ss_dssp             CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEE-EEEEESSHHHHHHHHHHSTTCEETTE--
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccE-EEEEECCHHHHHHHHHHhCCCeeCCe--
Confidence            356666  89999999999999999999999999987422        355 99999999999999999999999998  


Q ss_pred             cEEEEEeecCCC
Q 019494          206 CKLHISYSRHTD  217 (340)
Q Consensus       206 ~~l~v~~ak~~~  217 (340)
                       .|+|.|++...
T Consensus        79 -~l~V~~a~~~~   89 (98)
T 2cpf_A           79 -KLEVRISERAT   89 (98)
T ss_dssp             -ECEEECSSCSS
T ss_pred             -EEEEEEccCCC
Confidence             99999987755

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.60  E-value=3.1e-15  Score=113.26  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=68.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      +++|+  |+||+.++|+++|+++|++||.|.+|.+..+      .+|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus         4 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l   77 (88)
T 4a8x_A            4 PTKVH--IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGY-AYVEFENPDEAEKALKHMDGGQIDGQ---EI   77 (88)
T ss_dssp             CCEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcE-EEEEEecHHHHHHHHHHcCCCeECCe---EE
Confidence            45566  8999999999999999999999999997542      3565 99999999999999999999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|+++++..
T Consensus        78 ~v~~a~~~~   86 (88)
T 4a8x_A           78 TATAVLAPW   86 (88)
T ss_dssp             EEEEECCCC
T ss_pred             EEEECCCCC
Confidence            999987653

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.8e-15  Score=117.93  Aligned_cols=75  Identities=20%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      +++|+  |+||+.++|+++|+++|++||.|++|++... +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+|++
T Consensus        27 ~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~   99 (101)
T 2la4_A           27 VTTAY--IGNIPHFATEADLIPLFQNFGFILDFKHYPE-KGC-CFIKYDTHEQAAVCIVALANFPFQGR---NLRTGWGK   99 (101)
T ss_dssp             CCEEE--EESCCTTCCHHHHHHHHHTTSCCSEEEEETT-TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECCCCBCC
T ss_pred             CCEEE--EcCCCcccCHHHHHHHHHhCCCEEEEEEecC-CCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEecc
Confidence            56666  8999999999999999999999999999854 465 99999999999999999999999998   99999987


Q ss_pred             CC
Q 019494          215 HT  216 (340)
Q Consensus       215 ~~  216 (340)
                      ++
T Consensus       100 ~~  101 (101)
T 2la4_A          100 ER  101 (101)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=116.94  Aligned_cols=74  Identities=16%  Similarity=0.352  Sum_probs=64.5

Q ss_pred             cEEEEEeecCCCCCCHHHHHHHHcccCC--eeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCC----eeCCCC
Q 019494          136 NVLLASIENMQYAVTLDVLHMVFSAFGP--VQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGH----CIYDGG  204 (340)
Q Consensus       136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~--v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~----~i~~~~  204 (340)
                      .+|+  |+||+.++|+|+|+++|++||.  |.+|++.++     ++|+ |||+|.+.++|.+|++.|||.    .|.|+ 
T Consensus        10 ~tlf--V~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~-aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr-   85 (95)
T 2lkz_A           10 DTII--LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF-AFVQLSSAMDASQLLQILQSLHPPLKIDGK-   85 (95)
T ss_dssp             CEEE--EESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSE-EEEECSSSHHHHHHHHHHHSSSSCEEETTE-
T ss_pred             CEEE--EeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceE-eEEEECCHHHHHHHHHHhcCCCCCceECCE-
Confidence            4566  9999999999999999999995  668887643     3576 999999999999999999997    48898 


Q ss_pred             ccEEEEEeecC
Q 019494          205 FCKLHISYSRH  215 (340)
Q Consensus       205 ~~~l~v~~ak~  215 (340)
                        .|+|+|||.
T Consensus        86 --~i~V~~Aks   94 (95)
T 2lkz_A           86 --TIGVDFAKS   94 (95)
T ss_dssp             --EEEEEECCC
T ss_pred             --EEEEEEccC
Confidence              999999985

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=2.9e-15  Score=117.16  Aligned_cols=79  Identities=16%  Similarity=0.307  Sum_probs=70.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|++|+|...+     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l   87 (103)
T 2cq0_A           14 DNATIR--VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF-AFISFHRREDAARAIAGVSGFGYDHL---IL   87 (103)
T ss_dssp             SSEEEE--EESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---EC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHcCCCeeCCc---EE
Confidence            466766  89999999999999999999999999987542     355 99999999999999999999999998   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.|++....
T Consensus        88 ~v~~a~~~~~   97 (103)
T 2cq0_A           88 NVEWAKPSTN   97 (103)
T ss_dssp             EEEESSCCCC
T ss_pred             EEEECCCCCC
Confidence            9999887653

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=115.46  Aligned_cols=76  Identities=16%  Similarity=0.343  Sum_probs=68.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|++|+|..++    +|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus        15 ~~~~l~--v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~   88 (95)
T 2ywk_A           15 ADRTVF--VGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSF-GFVCFKHPESVSYAIALLNGIRLYGR---PIN   88 (95)
T ss_dssp             GGGEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSTHHHHHHHHHHTTCEETTE---ECE
T ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCC---EEE
Confidence            466777  88999999999999999999999999987643    354 99999999999999999999999998   999


Q ss_pred             EEeecC
Q 019494          210 ISYSRH  215 (340)
Q Consensus       210 v~~ak~  215 (340)
                      |+|++.
T Consensus        89 V~~a~~   94 (95)
T 2ywk_A           89 VSGPSS   94 (95)
T ss_dssp             EECCCC
T ss_pred             EEEcCC
Confidence            999864

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.60  E-value=3.5e-15  Score=118.20  Aligned_cols=76  Identities=21%  Similarity=0.495  Sum_probs=68.9

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++++|+  |+||+.++|+++|+++|++||.|++|++.   +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+|+
T Consensus        30 ~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a  100 (108)
T 2jvo_A           30 SNTRLF--VRPFPLDVQESELNEIFGPFGPMKEVKIL---NGF-AFVEFEEAESAAKAIEEVHGKSFANQ---PLEVVYS  100 (108)
T ss_dssp             SCSEEE--ECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEESC
T ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEe
Confidence            466777  89999999999999999999999999988   465 99999999999999999999999998   9999999


Q ss_pred             cCCCC
Q 019494          214 RHTDL  218 (340)
Q Consensus       214 k~~~~  218 (340)
                      +....
T Consensus       101 ~~~~~  105 (108)
T 2jvo_A          101 KLPAK  105 (108)
T ss_dssp             SCCC-
T ss_pred             cCCCC
Confidence            87643

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=5.7e-15  Score=113.14  Aligned_cols=75  Identities=21%  Similarity=0.306  Sum_probs=68.1

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++++|+  |+||+.++|+++|+++|++||.|++|++.+   + +|||+|.+.++|.+|++.|||..|.++   .|+|+|+
T Consensus         9 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a   79 (92)
T 2dgt_A            9 ASTKLH--VGNISPTCTNQELRAKFEEYGPVIECDIVK---D-YAFVHMERAEDAVEAIRGLDNTEFQGK---RMHVQLS   79 (92)
T ss_dssp             SSEEEE--EESCCSSCCHHHHHHHHHTTSCCCEEEECS---S-EEEEEESCHHHHHHHHHHHTTEEETTE---EEEEEES
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---C-EEEEEECCHHHHHHHHHHhCCCeeCCc---EEEEEEc
Confidence            356666  899999999999999999999999999874   3 599999999999999999999999998   9999998


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      +.+.
T Consensus        80 ~~~~   83 (92)
T 2dgt_A           80 TSRL   83 (92)
T ss_dssp             SCCC
T ss_pred             cCCC
Confidence            7654

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=6.4e-15  Score=115.53  Aligned_cols=80  Identities=14%  Similarity=0.252  Sum_probs=71.1

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l   87 (105)
T 1x5u_A           14 QDATVY--VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY-GFVEFLSEEDADYAIKIMDMIKLYGK---PI   87 (105)
T ss_dssp             TTTEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSC-EEEEESSHHHHHHHHHHSSSCBCSSC---BC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcE-EEEEECCHHHHHHHHHHhCCCeECCe---EE
Confidence            466777  89999999999999999999999999987542     465 99999999999999999999999999   99


Q ss_pred             EEEeecCCCCc
Q 019494          209 HISYSRHTDLS  219 (340)
Q Consensus       209 ~v~~ak~~~~~  219 (340)
                      +|.|++....+
T Consensus        88 ~v~~a~~~~~~   98 (105)
T 1x5u_A           88 RVNKASAHNKN   98 (105)
T ss_dssp             EEEETTTTSCC
T ss_pred             EEEECCCCCcC
Confidence            99999876543

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.59  E-value=4.6e-15  Score=118.46  Aligned_cols=80  Identities=21%  Similarity=0.306  Sum_probs=70.7

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      +++++|+  |.||+.++|+++|+++|++||.|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.++   .
T Consensus        23 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~   96 (115)
T 2cpz_A           23 PEGANLF--IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF-GFVSYDNPVSAQAAIQSMNGFQIGMK---R   96 (115)
T ss_dssp             STTCCEE--EESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---E
T ss_pred             CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCcc-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence            3456677  89999999999999999999999999987543     355 99999999999999999999999998   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|+|++++..
T Consensus        97 l~V~~a~~~~~  107 (115)
T 2cpz_A           97 LKVQLKRSKND  107 (115)
T ss_dssp             CEEECCCCSCC
T ss_pred             EEEEEcCCCCc
Confidence            99999987654

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=4.7e-15  Score=115.96  Aligned_cols=79  Identities=15%  Similarity=0.324  Sum_probs=70.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|++|+|..+   .+|+ |||+|.+.++|.+|++.|||..|.++   .|+|
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V   87 (103)
T 2d9p_A           14 QVVNLY--VKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-GFVCFSSPEEATKAVTEMNGRIVATK---PLYV   87 (103)
T ss_dssp             SCCCEE--EECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEE
Confidence            356666  8999999999999999999999999998854   2354 99999999999999999999999998   9999


Q ss_pred             EeecCCCC
Q 019494          211 SYSRHTDL  218 (340)
Q Consensus       211 ~~ak~~~~  218 (340)
                      .|++.+..
T Consensus        88 ~~a~~~~~   95 (103)
T 2d9p_A           88 ALAQRKEE   95 (103)
T ss_dssp             EECSSCCC
T ss_pred             EEeccccc
Confidence            99987654

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.59  E-value=2.1e-15  Score=120.21  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=66.4

Q ss_pred             EEEeecCCCCCCHHHHHHHHcccC-CeeEEEEE-cCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          139 LASIENMQYAVTLDVLHMVFSAFG-PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       139 ~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~-~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      .|+|+||++++|+++|+++|++|| +|..+.|. .+++|+ |||+|++.++|.+|++.|||..|.|+   .|+|.+++..
T Consensus        30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGf-aFV~F~~~e~A~~Ai~~lng~~l~Gr---~i~V~~a~~~  105 (111)
T 2jvr_A           30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGT-GALEFPSEEILVEALERLNNIEFRGS---VITVERDDNP  105 (111)
T ss_dssp             EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCC-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEEESCC-
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEECCCC
Confidence            345999999999999999999999 99999986 345686 99999999999999999999999999   9999998643

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=5.6e-15  Score=116.89  Aligned_cols=78  Identities=15%  Similarity=0.335  Sum_probs=70.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      .+++|+  |+||+..+|+++|+++|++||.|.+|+|...+ |+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|+
T Consensus        24 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a   96 (109)
T 1x4g_A           24 KNCTVY--CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-GY-SFVRFSTHESAAHAIVSVNGTTIEGH---VVKCYWG   96 (109)
T ss_dssp             SCCEEE--EECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEECC
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CE-EEEEECCHHHHHHHHHHcCCCEECCc---EEEEEec
Confidence            356666  89999999999999999999999999998774 65 99999999999999999999999998   9999999


Q ss_pred             cCCCC
Q 019494          214 RHTDL  218 (340)
Q Consensus       214 k~~~~  218 (340)
                      +....
T Consensus        97 ~~~~~  101 (109)
T 1x4g_A           97 KESPD  101 (109)
T ss_dssp             CCCCS
T ss_pred             CCCCC
Confidence            87653

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.59  E-value=1.1e-15  Score=149.65  Aligned_cols=78  Identities=22%  Similarity=0.390  Sum_probs=69.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++||  |+||+..+|+++|.++|+.||.|+.|.|+..     .+|| |||+|.+.++|.+||+.|||..|.|.   .|+
T Consensus       102 ~~~lf--V~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~i~gr---~i~  175 (437)
T 3pgw_S          102 FKTLF--VARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGY-AFIEYEHERDMHSAYKHADGKKIDGR---RVL  175 (437)
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccce-EEEeeccHHHHHHHHHHcCCCEECCE---EEE
Confidence            55666  8999999999999999999999999998743     2565 99999999999999999999999998   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |.|++....
T Consensus       176 V~~a~~~~~  184 (437)
T 3pgw_S          176 VDVERGRTV  184 (437)
T ss_pred             EEEeCCCCC
Confidence            999986543

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.59  E-value=3.2e-15  Score=119.02  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      +++|+  |+||+..+|+++|+++|++||.|.+|.|... +|+ |||+|.+.++|.+|++.|||..|.++   .|+|+|++
T Consensus        10 ~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~   82 (111)
T 1whx_A           10 KTVIL--AKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-GIT-AIVEFLEPLEARKAFRHLAYSKFHHV---PLYLEWAP   82 (111)
T ss_dssp             EEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCSS-SSC-EEEEESCHHHHHHHHHHHTTCBSSSS---BCEEEEEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCE-EEEEeCCHHHHHHHHHHhCCCEECCe---EEEEEECC
Confidence            45666  8999999999999999999999999988764 465 99999999999999999999999999   99999998


Q ss_pred             CCCC
Q 019494          215 HTDL  218 (340)
Q Consensus       215 ~~~~  218 (340)
                      ....
T Consensus        83 ~~~~   86 (111)
T 1whx_A           83 IGVF   86 (111)
T ss_dssp             TTTT
T ss_pred             CCcc
Confidence            7543

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=6.7e-15  Score=115.08  Aligned_cols=78  Identities=23%  Similarity=0.395  Sum_probs=69.8

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+.++|+++|+++|+.||.|++|.|...     .+|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        12 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l   85 (103)
T 2dnm_A           12 GMITLK--VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGF-AFVRFHDRRDAQDAEAAMDGAELDGR---EL   85 (103)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSC-EEEEESSSSHHHHHHHHHSSCCBTTB---CC
T ss_pred             CCeEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence            456766  8999999999999999999999999998753     2465 99999999999999999999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|.|++...
T Consensus        86 ~V~~a~~~~   94 (103)
T 2dnm_A           86 RVQVARYGR   94 (103)
T ss_dssp             EEEECSSCC
T ss_pred             EEEECCcCC
Confidence            999998754

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.59  E-value=2.7e-15  Score=115.90  Aligned_cols=81  Identities=25%  Similarity=0.441  Sum_probs=71.6

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494          133 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC  206 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~  206 (340)
                      +++++|+  |+||+.++|+++|+    ++|++||.|.+|++..  +.+|+ |||+|.+.++|.+|++.|||..|.|+   
T Consensus         6 ~~~~~l~--V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---   79 (97)
T 1nu4_A            6 RPNHTIY--INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK---   79 (97)
T ss_dssp             CCCSEEE--EESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTC-EEEEESSHHHHHHHHHHHTTCEETTE---
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcE-EEEEeCCHHHHHHHHHHhCCCEECCc---
Confidence            3577777  88999999999999    9999999999999874  23465 99999999999999999999999998   


Q ss_pred             EEEEEeecCCCCc
Q 019494          207 KLHISYSRHTDLS  219 (340)
Q Consensus       207 ~l~v~~ak~~~~~  219 (340)
                      .|+|+|++.....
T Consensus        80 ~l~v~~a~~~~~~   92 (97)
T 1nu4_A           80 PMRIQYAKTDSDI   92 (97)
T ss_dssp             ECEEEECSSCCTH
T ss_pred             EEEEEEccCCCcc
Confidence            9999999887644

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.59  E-value=4.5e-15  Score=114.79  Aligned_cols=77  Identities=23%  Similarity=0.350  Sum_probs=68.7

Q ss_pred             CCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          133 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      +++++|+  |+||+. .+|+++|+++|++||.|.+|.|.   +|+ |||+|.+.++|.+|++.|||..+.|+   .|+|.
T Consensus         8 ~~~~~l~--V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~   78 (96)
T 2kvi_A            8 PPKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIECESQEMNFGK---KLILE   78 (96)
T ss_dssp             -CCEEEE--EESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTE-EEEEESCHHHHHHHHHHHTCSSCBTT---TBCEE
T ss_pred             CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCeeCCc---EEEEE
Confidence            3466777  899998 99999999999999999999985   365 99999999999999999999999998   99999


Q ss_pred             eecCCCC
Q 019494          212 YSRHTDL  218 (340)
Q Consensus       212 ~ak~~~~  218 (340)
                      |++....
T Consensus        79 ~a~~~~~   85 (96)
T 2kvi_A           79 VSSSNAR   85 (96)
T ss_dssp             EEECCCC
T ss_pred             EcCcCCC
Confidence            9987653

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.58  E-value=5.9e-15  Score=116.80  Aligned_cols=78  Identities=23%  Similarity=0.406  Sum_probs=69.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+..+|+++|+++|+.||.|++|+|...+     +|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus        25 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l   98 (110)
T 1oo0_B           25 EGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMGQ---TI   98 (110)
T ss_dssp             TBEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence            456666  89999999999999999999999999987542     465 99999999999999999999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|+|++.+.
T Consensus        99 ~V~~a~~~~  107 (110)
T 1oo0_B           99 QVDWCFVKG  107 (110)
T ss_dssp             EEEESEESS
T ss_pred             EEEEcccCC
Confidence            999998654

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=8.3e-15  Score=111.75  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=68.1

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++++|+  |+||+.++|+++|+++|++||.|++|++.+   + +|||+|.+.++|.+|++.|||..|.++   .|+|.|+
T Consensus         8 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a   78 (90)
T 2dnp_A            8 NTWKIF--VGNVSAACTSQELRSLFERRGRVIECDVVK---D-YAFVHMEKEADAKAAIAQLNGKEVKGK---RINVELS   78 (90)
T ss_dssp             CSCCEE--EESCCTTCCHHHHHHHHHHHSCEEEEEECS---S-CEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEES
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---C-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence            356666  899999999999999999999999999874   3 499999999999999999999999998   9999998


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      +...
T Consensus        79 ~~~~   82 (90)
T 2dnp_A           79 TKGQ   82 (90)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8764

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.58  E-value=7e-15  Score=114.21  Aligned_cols=75  Identities=17%  Similarity=0.406  Sum_probs=67.0

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI  200 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i  200 (340)
                      +..+|+  |+||+.++|+++|+++|++||.|.+        |+|..++     +|+ |||+|.+.++|.+|++.|||..|
T Consensus        12 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~Ai~~l~g~~~   88 (99)
T 2la6_A           12 DNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEF   88 (99)
T ss_dssp             CCSEEE--EECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEE-EEEEBSSHHHHHHHHHHHTTCBS
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeE-EEEEECCHHHHHHHHHHhCCCEe
Confidence            456666  8999999999999999999999999        8887542     355 99999999999999999999999


Q ss_pred             CCCCccEEEEEeec
Q 019494          201 YDGGFCKLHISYSR  214 (340)
Q Consensus       201 ~~~~~~~l~v~~ak  214 (340)
                      .|+   .|+|+||+
T Consensus        89 ~g~---~l~V~~A~   99 (99)
T 2la6_A           89 SGN---PIKVSFAT   99 (99)
T ss_dssp             SSS---BCEEEECC
T ss_pred             CCc---EEEEEecC
Confidence            998   99999975

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.8e-14  Score=114.64  Aligned_cols=78  Identities=21%  Similarity=0.416  Sum_probs=69.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|++|+|..++    +|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus        14 ~~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~   87 (114)
T 2do0_A           14 LGSTVF--VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGI-GTVTFEQSIEAVQAISMFNGQLLFDR---PMH   87 (114)
T ss_dssp             CCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCEeCCC---EEE
Confidence            466777  89999999999999999999999999987643    344 99999999999999999999999998   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |+|++...
T Consensus        88 v~~a~~~~   95 (114)
T 2do0_A           88 VKMDERAL   95 (114)
T ss_dssp             EEECSCCC
T ss_pred             EEEcccCC
Confidence            99987644

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.58  E-value=2.3e-15  Score=119.68  Aligned_cols=77  Identities=14%  Similarity=0.243  Sum_probs=68.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHH---HHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          135 SNVLLASIENMQYAVTLDVLH---MVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~---~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      .++|+  |.||+..+|+++|+   ++|++||+|++|+|..+.        +|+ |||+|++.++|.+|++.|||..|.|+
T Consensus        15 ~~~l~--V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~~gr   91 (111)
T 2cpi_A           15 KNLVF--VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS-AYVTYIRSEDALRAIQCVNNVVVDGR   91 (111)
T ss_dssp             SSCEE--EEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEE-EEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeE-EEEEECcHHHHHHHHHHhCCCEECCE
Confidence            45566  89999999999999   999999999999987543        255 99999999999999999999999998


Q ss_pred             CccEEEEEeecCCC
Q 019494          204 GFCKLHISYSRHTD  217 (340)
Q Consensus       204 ~~~~l~v~~ak~~~  217 (340)
                         .|+|+|++.+.
T Consensus        92 ---~l~V~~a~~k~  102 (111)
T 2cpi_A           92 ---TLKASLGTTKY  102 (111)
T ss_dssp             ---EEEEESCCCCS
T ss_pred             ---EEEEEeccccc
Confidence               99999988764

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.58  E-value=2.9e-15  Score=120.07  Aligned_cols=76  Identities=22%  Similarity=0.344  Sum_probs=67.5

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      .++++|+  |+||+.++|+++|+++|++||+|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.|+   .
T Consensus        38 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~  111 (118)
T 2khc_A           38 PEGCNLF--IYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCF-GFVSFDNPDSAQVAIKAMNGFQVGTK---R  111 (118)
T ss_dssp             CCSEEEE--EECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCE-EEEEEESSHHHHHHHHHCCCCEETTE---E
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence            3466666  89999999999999999999999999987532     565 99999999999999999999999998   9


Q ss_pred             EEEEeec
Q 019494          208 LHISYSR  214 (340)
Q Consensus       208 l~v~~ak  214 (340)
                      |+|+|+|
T Consensus       112 l~V~~ak  118 (118)
T 2khc_A          112 LKVQLKK  118 (118)
T ss_dssp             CCEEEC-
T ss_pred             EEEEecC
Confidence            9999975

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.58  E-value=1.8e-15  Score=120.61  Aligned_cols=78  Identities=9%  Similarity=0.012  Sum_probs=65.6

Q ss_pred             ccccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            4 IWPLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         4 ~~~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..|...|||+|++.   +|+||+++|++||+|.+|++++  +++||||+|.+.++|.+|++.|++....       +.|+
T Consensus        22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------l~Gr   92 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALW-------FQGR   92 (112)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCC-------SSSS
T ss_pred             CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCE
Confidence            35677889888774   3799999999999999999875  4678999999999999999999764421       5799


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|+|++.+
T Consensus        93 ~l~V~~a~~~  102 (112)
T 1x4f_A           93 CVKVDLSEKY  102 (112)
T ss_dssp             CCEEEEECSC
T ss_pred             EEEEEECccc
Confidence            9999999854

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.58  E-value=1.2e-14  Score=115.05  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=70.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhc------CCeeCC
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE------GHCIYD  202 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~ln------g~~i~~  202 (340)
                      ++++|+  |.||+.++|+++|+++|+.||.|..|+|..+     .+|+ |||+|.+.++|.+|++.||      |..|.|
T Consensus        14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g   90 (111)
T 1x4h_A           14 EGKTVF--IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGC-AFAQFMTQEAAQKCLAAASLEAEGGGLKLDG   90 (111)
T ss_dssp             CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSE-EEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccE-EEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence            466666  8999999999999999999999999998743     3565 9999999999999999999      999999


Q ss_pred             CCccEEEEEeecCCCC
Q 019494          203 GGFCKLHISYSRHTDL  218 (340)
Q Consensus       203 ~~~~~l~v~~ak~~~~  218 (340)
                      +   .|+|.|++.+..
T Consensus        91 ~---~l~v~~a~~~~~  103 (111)
T 1x4h_A           91 R---QLKVDLAVTRDE  103 (111)
T ss_dssp             C---EEEEECCCCCCC
T ss_pred             E---EEEEEECCCCcc
Confidence            9   999999987653

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=8e-15  Score=115.16  Aligned_cols=78  Identities=19%  Similarity=0.366  Sum_probs=69.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+..+|+++|+++|+.||.|.+|.|...+     +|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus        22 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l   95 (106)
T 1p27_B           22 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI   95 (106)
T ss_dssp             TBEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESCHHHHHHHHHHHTTCBSSSS---BC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeE-EEEEECCHHHHHHHHHHhcCCEECCc---EE
Confidence            356666  89999999999999999999999999987542     355 99999999999999999999999999   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|+|++.+.
T Consensus        96 ~V~~a~~~~  104 (106)
T 1p27_B           96 SVDWCFVRG  104 (106)
T ss_dssp             EEEESEESS
T ss_pred             EEEeecCCC
Confidence            999987653

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.58  E-value=7.1e-15  Score=119.21  Aligned_cols=79  Identities=19%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+..+|+++|+++|+.||.|+.|.|...+     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        21 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l   94 (126)
T 3ex7_B           21 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI   94 (126)
T ss_dssp             SSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSC-EEEEESSHHHHHHHHHHHTTCBSSSS---BC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCe---EE
Confidence            456666  89999999999999999999999999987542     566 99999999999999999999999998   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|+|++....
T Consensus        95 ~v~~a~~~~~  104 (126)
T 3ex7_B           95 SVDWCFVRGP  104 (126)
T ss_dssp             EEEESEESSS
T ss_pred             EEEEecCCCC
Confidence            9999986553

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=6.1e-15  Score=114.38  Aligned_cols=78  Identities=12%  Similarity=0.329  Sum_probs=69.1

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCee-EEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ-KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~-~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ++++|+  |+||+.++|+++|+++|++||.|+ +|+|..++     +|+ |||+|.+.++|.+|++.|||..|.++   .
T Consensus         8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~   81 (99)
T 2div_A            8 MAASLW--MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGY-CFVEFADLATAEKCLHKINGKPLPGA---T   81 (99)
T ss_dssp             SSSEEE--ECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEE-EEEECSCHHHHHHHHHTTTTSEESSC---S
T ss_pred             CccEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCE-EEEEeCCHHHHHHHHHHHcCCccCCC---C
Confidence            467777  899999999999999999999999 99987543     355 99999999999999999999999998   7


Q ss_pred             ----EEEEeecCCC
Q 019494          208 ----LHISYSRHTD  217 (340)
Q Consensus       208 ----l~v~~ak~~~  217 (340)
                          |+|+|++...
T Consensus        82 ~~~~l~v~~a~~~~   95 (99)
T 2div_A           82 PAKRFKLNYATYSG   95 (99)
T ss_dssp             SCEECCEEETTCCS
T ss_pred             cceeEEEeecCCCC
Confidence                9999987654

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.58  E-value=7.3e-15  Score=115.41  Aligned_cols=78  Identities=17%  Similarity=0.333  Sum_probs=68.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCee---CCCCc
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCI---YDGGF  205 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i---~~~~~  205 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|++|+|..+     .+|+ |||+|.+.++|.+|++.|||..+   .++  
T Consensus        12 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g~--   86 (106)
T 2dgp_A           12 DAIKLF--IGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGC-AFLTYCERESALKAQSALHEQKTLPGMNR--   86 (106)
T ss_dssp             TCEEEE--EESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSE-EEEEESSHHHHHHHHHHHTTTCCCTTCSS--
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhcCCcccCCCCc--
Confidence            456666  8999999999999999999999999998753     3465 99999999999999999999987   677  


Q ss_pred             cEEEEEeecCCC
Q 019494          206 CKLHISYSRHTD  217 (340)
Q Consensus       206 ~~l~v~~ak~~~  217 (340)
                       .|+|.|++...
T Consensus        87 -~l~v~~a~~~~   97 (106)
T 2dgp_A           87 -PIQVKPADSES   97 (106)
T ss_dssp             -CCEEEECCCCS
T ss_pred             -eEEEEECCccc
Confidence             99999988755

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.57  E-value=9e-15  Score=115.79  Aligned_cols=78  Identities=21%  Similarity=0.397  Sum_probs=69.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+..+|+++|+++|++||.|.+|+|...+     +|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus        25 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~i~g~---~l   98 (108)
T 2jrs_A           25 GPMRLY--VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGY-GFITFSDSECAKKALEQLNGFELAGR---PM   98 (108)
T ss_dssp             SCEEEE--EECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence            456666  89999999999999999999999999987542     355 99999999999999999999999999   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|+|++.+.
T Consensus        99 ~V~~a~~k~  107 (108)
T 2jrs_A           99 KVGHVTERT  107 (108)
T ss_dssp             EEECSCSSC
T ss_pred             EEEEcccCC
Confidence            999998754

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.57  E-value=1.6e-15  Score=115.91  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=63.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      |+|+||+.++|+++|+++|+.||  .|.+|++..++     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.+
T Consensus         4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~i~V~~   79 (90)
T 3p5t_L            4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---NPVVTP   79 (90)
T ss_dssp             CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEE-EEECC-CHHHHHHHHHHGGGSCSSSC---CCEECC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcE-EEEEECCHHHHHHHHHHcCCCeeCCE---EEEEEE
Confidence            55999999999999999999999  99999987542     455 99999999999999999999999999   999999


Q ss_pred             ecCCC
Q 019494          213 SRHTD  217 (340)
Q Consensus       213 ak~~~  217 (340)
                      +++..
T Consensus        80 ~~~~~   84 (90)
T 3p5t_L           80 SNKLE   84 (90)
T ss_dssp             C----
T ss_pred             CCCCc
Confidence            87654

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=3.8e-15  Score=118.92  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=67.0

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCee-----CCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI-----YDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i-----~~~~~~~l  208 (340)
                      +++.|+|..+||++++|+++|+++|++||+|++|+|... +|| |||+|++.++|.+|++.|||..|     .+.   .|
T Consensus        24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~---~l   98 (114)
T 2cq2_A           24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQKI---TL   98 (114)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSC-EEEEESSHHHHHHHHHHTTTCEEECTTSCEE---EC
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCE-EEEEECCHHHHHHHHHHhCCCEEccccCCCc---EE
Confidence            467777222679999999999999999999999988764 576 99999999999999999999988     344   89


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      .|.|++...
T Consensus        99 ~v~~a~~~p  107 (114)
T 2cq2_A           99 YLNFVEKVQ  107 (114)
T ss_dssp             EEEEESCCC
T ss_pred             EEEecccCc
Confidence            999987543

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.57  E-value=6.6e-15  Score=120.39  Aligned_cols=79  Identities=22%  Similarity=0.357  Sum_probs=70.4

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      .++++|+  |.||+.++|+++|+++|++||+|++|+|..+     .+|+ |||+|.+.++|.+|++.|||..|.|+   .
T Consensus        44 ~~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~lng~~i~g~---~  117 (129)
T 2kxn_B           44 DPNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---R  117 (129)
T ss_dssp             CCSSCBC--EETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCE-EEEEESCHHHHHHHHHHHTTCCSSSS---C
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence            3466777  8999999999999999999999999998753     3565 99999999999999999999999999   9


Q ss_pred             EEEEeecCCC
Q 019494          208 LHISYSRHTD  217 (340)
Q Consensus       208 l~v~~ak~~~  217 (340)
                      |+|+|++.+.
T Consensus       118 l~V~~a~~~~  127 (129)
T 2kxn_B          118 IRVDFSITKR  127 (129)
T ss_dssp             CEESCCSSSS
T ss_pred             EEEEEecCCC
Confidence            9999988754

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=1.6e-14  Score=115.44  Aligned_cols=78  Identities=15%  Similarity=0.237  Sum_probs=68.7

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      .+.++|+  |.||+.++|+++|+++|++||.|++|+|...     .+|+ |||+|.+.++|.+|++.||+ .|.++   .
T Consensus        15 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~~~~-~~~g~---~   87 (116)
T 2cqd_A           15 TTFTKIF--VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY-GFVTMADRAAAERACKDPNP-IIDGR---K   87 (116)
T ss_dssp             CSSSEEE--EECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSE-EEEEESSHHHHHHHHTCSSC-EETTE---E
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhCCC-cCCCE---E
Confidence            3466777  8999999999999999999999999998754     2465 99999999999999999999 89988   9


Q ss_pred             EEEEeecCCC
Q 019494          208 LHISYSRHTD  217 (340)
Q Consensus       208 l~v~~ak~~~  217 (340)
                      |+|+|++...
T Consensus        88 l~V~~a~~~~   97 (116)
T 2cqd_A           88 ANVNLAYLGA   97 (116)
T ss_dssp             CEEEESTTTC
T ss_pred             EEEEEcccCC
Confidence            9999987654

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.57  E-value=1.2e-14  Score=122.33  Aligned_cols=78  Identities=21%  Similarity=0.284  Sum_probs=69.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+.++|+++|+++|++||+|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        38 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l  111 (156)
T 1h2v_Z           38 KSCTLY--VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGF-CFVEYYSRADAENAMRYINGTRLDDR---II  111 (156)
T ss_dssp             TCCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTSEETTE---EC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence            466777  89999999999999999999999999987543     355 99999999999999999999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|+|++...
T Consensus       112 ~V~~a~~~~  120 (156)
T 1h2v_Z          112 RTDWDAGFK  120 (156)
T ss_dssp             EEEEESCCC
T ss_pred             EEEECCCCC
Confidence            999998754

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=4.4e-15  Score=113.93  Aligned_cols=76  Identities=29%  Similarity=0.384  Sum_probs=65.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCC-eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC-CeeCCCCccEEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG-HCIYDGGFCKLHIS  211 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng-~~i~~~~~~~l~v~  211 (340)
                      +++.|+  |+||+.++|+++|+++|++||. |..+.+..  +|+ |||+|.+.++|.+|++.||| ..|.++   .|+|+
T Consensus         7 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~--~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~   78 (93)
T 2cqh_A            7 GMNKLY--IGNLSPAVTADDLRQLFGDRKLPLAGQVLLK--SGY-AFVDYPDQNWAIRAIETLSGKVELHGK---IMEVD   78 (93)
T ss_dssp             CCCCEE--EECCCTTCCHHHHHHHHHHTTCCCSSCEEEE--TTE-EEECCSCHHHHHHHHHHHTTTCEETTE---ECEEE
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHHcCCceEEEEEcC--CCE-EEEEECCHHHHHHHHHHccCCeeECCE---EEEEE
Confidence            355666  8999999999999999999999 55555533  465 99999999999999999999 999998   99999


Q ss_pred             eecCCC
Q 019494          212 YSRHTD  217 (340)
Q Consensus       212 ~ak~~~  217 (340)
                      |++.+.
T Consensus        79 ~a~~~~   84 (93)
T 2cqh_A           79 YSVSKK   84 (93)
T ss_dssp             ECCCCC
T ss_pred             EccCcc
Confidence            998754

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=9.6e-15  Score=113.05  Aligned_cols=76  Identities=18%  Similarity=0.315  Sum_probs=66.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE-cCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~-~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +++|+  |+||+..+|+++|+++|+.||.|. +++. .+.+|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+++
T Consensus        19 ~~~l~--V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a   91 (97)
T 2e5j_A           19 AADVY--VGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRR-AFLHYPDSAAAQQAVSCLQGLRLGTD---TLRVALA   91 (97)
T ss_dssp             CCEEE--EECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTE-EEEECSSHHHHHHHHHHHTTCCSSSS---CCEEEEC
T ss_pred             CCEEE--EeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEc
Confidence            56666  899999999999999999999996 4543 445676 99999999999999999999999998   9999998


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      +++.
T Consensus        92 ~~~~   95 (97)
T 2e5j_A           92 RQQR   95 (97)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8754

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.56  E-value=1e-14  Score=120.34  Aligned_cols=78  Identities=17%  Similarity=0.353  Sum_probs=69.8

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ..++|+  |+||+.++|+++|+++|+.||+|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        41 ~~~~l~--V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l  114 (139)
T 1u6f_A           41 VLRNLM--VNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY-GFVKFQSGSSAQQAIAGLNGFNILNK---RL  114 (139)
T ss_dssp             TTSEEE--EESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEE-EEEEESSHHHHHHHHHHTTTEECSSC---EE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence            356777  89999999999999999999999999987542     455 99999999999999999999999999   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|+|++...
T Consensus       115 ~v~~a~~~~  123 (139)
T 1u6f_A          115 KVALAASGH  123 (139)
T ss_dssp             EEEESSCCC
T ss_pred             EEEECCCCC
Confidence            999988754

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.56  E-value=2.6e-15  Score=117.13  Aligned_cols=76  Identities=13%  Similarity=0.205  Sum_probs=68.3

Q ss_pred             CcEEEEEeecCCC------CCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCC-
Q 019494          135 SNVLLASIENMQY------AVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYD-  202 (340)
Q Consensus       135 s~vl~v~v~nl~~------~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~-  202 (340)
                      +++|+  |+|||.      ++++++|+++|++||.|.+|+|...     ++|+ |||+|.+.++|.+|++.|||..|.+ 
T Consensus         6 ~~~vf--V~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~g~   82 (100)
T 3ns6_A            6 DQYIV--VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGF-LFVECGSMNDAKKIIKSFHGKRLDLK   82 (100)
T ss_dssp             GGEEE--EESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred             CcEEE--EeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHhCCcccCCC
Confidence            56766  899999      9999999999999999999998643     3576 9999999999999999999999999 


Q ss_pred             CCccEEEEEeecCC
Q 019494          203 GGFCKLHISYSRHT  216 (340)
Q Consensus       203 ~~~~~l~v~~ak~~  216 (340)
                      +   .|+|.++++.
T Consensus        83 r---~l~V~~a~~~   93 (100)
T 3ns6_A           83 H---RLFLYTMKDV   93 (100)
T ss_dssp             C---BCEEEESHHH
T ss_pred             e---EEEEEECchh
Confidence            8   9999998764

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.56  E-value=1.8e-14  Score=116.66  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=70.4

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++++|+  |+||+..+|+++|+++|++||+|++|+|..+    .+|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus        34 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~  107 (124)
T 2kt5_A           34 TGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PMD  107 (124)
T ss_dssp             SCEEEE--EESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSE-EEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeE-EEEEECCHHHHHHHHHHcCCCEECCc---EEE
Confidence            356666  8999999999999999999999999998764    3565 99999999999999999999999998   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |+||+....
T Consensus       108 V~~a~~~~~  116 (124)
T 2kt5_A          108 IQLVASQID  116 (124)
T ss_dssp             EEEECCTTC
T ss_pred             EEEeCCCCC
Confidence            999987554

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=6e-15  Score=115.40  Aligned_cols=79  Identities=23%  Similarity=0.377  Sum_probs=70.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+..+|+++|+++|+.||.|.+|++....     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus         8 ~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~   81 (104)
T 1p1t_A            8 LRSVF--VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY-GFCEYQDQETALSAMRNLNGREFSGR---ALR   81 (104)
T ss_dssp             HSCEE--EESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEE-EEEECSCHHHHHHHHHHSSSBSCSSS---CBE
T ss_pred             ccEEE--EeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCc---EEE
Confidence            45566  89999999999999999999999999987542     455 99999999999999999999999998   999


Q ss_pred             EEeecCCCCc
Q 019494          210 ISYSRHTDLS  219 (340)
Q Consensus       210 v~~ak~~~~~  219 (340)
                      |+|++.....
T Consensus        82 v~~a~~~~~~   91 (104)
T 1p1t_A           82 VDNAASEKNK   91 (104)
T ss_dssp             EEETTCTTHH
T ss_pred             EEeCCCccch
Confidence            9999876543

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=1.4e-14  Score=112.49  Aligned_cols=75  Identities=17%  Similarity=0.431  Sum_probs=67.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHccc--CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~f--G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      ++++|+  |+||+..+|+++|+++|++|  |.|.+|++.   +|+ |||+|.+.++|.+|++.|||..|.++   .|+|.
T Consensus        14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~   84 (99)
T 2cpd_A           14 SVKILY--VRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDY-AFVHFSNREDAVEAMKALNGKVLDGS---PIEVT   84 (99)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHSSEEETTE---EEEEE
T ss_pred             CcCEEE--EeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCe-EEEEeCCHHHHHHHHHHhCCCEeCCc---EEEEE
Confidence            466777  89999999999999999999  999998875   354 99999999999999999999999998   99999


Q ss_pred             eecCCC
Q 019494          212 YSRHTD  217 (340)
Q Consensus       212 ~ak~~~  217 (340)
                      |+++..
T Consensus        85 ~a~~~~   90 (99)
T 2cpd_A           85 LAKPVD   90 (99)
T ss_dssp             CCCCCC
T ss_pred             ECCCCC
Confidence            998754

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.55  E-value=6.7e-15  Score=117.04  Aligned_cols=76  Identities=14%  Similarity=0.076  Sum_probs=66.6

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      |...|||++++.  +|++|+++|++||+|.+|.++.    +.+++||||+|.+.++|++|++.|||..|         .|
T Consensus         5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---------~g   75 (110)
T 3s8s_A            5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---------MG   75 (110)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            556789999884  4899999999999999998876    33567899999999999999999999985         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      +.|+|+++...
T Consensus        76 r~i~V~~a~~~   86 (110)
T 3s8s_A           76 NIIHAQLDIKG   86 (110)
T ss_dssp             EECEEEECSTT
T ss_pred             eEEEEEECCCC
Confidence            99999998754

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.55  E-value=1.3e-14  Score=114.98  Aligned_cols=74  Identities=23%  Similarity=0.372  Sum_probs=67.2

Q ss_pred             CcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          135 SNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       135 s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +++|+  |.||+.. +|+++|+++|++||.|++|.|   .+|+ |||+|.+.++|.+|++.|||..|.++   .|+|+|+
T Consensus        27 ~~~l~--V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~a   97 (110)
T 1wf1_A           27 NSRVF--IGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGY-AFVQYSNERHARAAVLGENGRVLAGQ---TLDINMA   97 (110)
T ss_dssp             SSEEE--ECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTE-EEEECSSSHHHHHHHHHHTTCEETTE---ECCEEES
T ss_pred             CcEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEC
Confidence            56666  8999999 999999999999999999999   3465 99999999999999999999999998   9999998


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      +...
T Consensus        98 ~~~~  101 (110)
T 1wf1_A           98 GEPK  101 (110)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7644

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.55  E-value=1e-14  Score=110.63  Aligned_cols=76  Identities=18%  Similarity=0.386  Sum_probs=67.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|.+|++....     +|+ |||+|.+.++|.+|+ .|||..|.|+   .|+
T Consensus         6 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~-~~~g~~~~g~---~l~   78 (89)
T 3ucg_A            6 ARSIY--VGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF-AYIEFSDKESVRTSL-ALDESLFRGR---QIK   78 (89)
T ss_dssp             HTEEE--EESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEE-EEEEESSTHHHHHHG-GGTTCEETTE---ECE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHH-hcCCCEECCc---EEE
Confidence            45566  89999999999999999999999999987542     465 999999999999999 9999999998   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.+++...
T Consensus        79 V~~a~~~~   86 (89)
T 3ucg_A           79 VIPKRTNR   86 (89)
T ss_dssp             EEETTTTS
T ss_pred             EEEccCCC
Confidence            99987643

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.55  E-value=6.4e-15  Score=114.79  Aligned_cols=74  Identities=24%  Similarity=0.312  Sum_probs=65.2

Q ss_pred             ccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494            8 SRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus         8 ~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      ++|||++++.  +|++|+++|++||+|.+|.+.+. ++++|||+|.+.++|++|++.|||..+         .|++|+|+
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~   70 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVI---------CGSRVRVE   70 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCS---------SSCCCEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeE---------CCcEEEEE
Confidence            3688888874  48999999999999999998875 567899999999999999999999984         69999999


Q ss_pred             eccCCc
Q 019494           86 YSAHTD   91 (340)
Q Consensus        86 ~s~~~~   91 (340)
                      +++.+.
T Consensus        71 ~a~~~~   76 (101)
T 2hvz_A           71 LSTGMP   76 (101)
T ss_dssp             ESSSCC
T ss_pred             EccCCC
Confidence            998653

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.55  E-value=1.5e-14  Score=110.01  Aligned_cols=77  Identities=13%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      ++.|+  |+||+..+|+++|+++|++| .|.+|++. +++|+ |||+|.+.++|.+|++.|||..+.|+   .|+|+|++
T Consensus         5 ~~~l~--V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a~   76 (88)
T 1wg1_A            5 SSGIL--VKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRT-AFVTLLNGEQAQNAIQMFHQYSFRGK---DLIVQLQP   76 (88)
T ss_dssp             CCCEE--EESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTE-EEECCSCHHHHHHHHHHHTTEEETTE---EEEEEECC
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcE-EEEEECCHHHHHHHHHHhCCCeECCc---EEEEEEcC
Confidence            45566  89999999999999999999 99999986 45575 99999999999999999999999998   99999998


Q ss_pred             CCCCc
Q 019494          215 HTDLS  219 (340)
Q Consensus       215 ~~~~~  219 (340)
                      ...+.
T Consensus        77 ~~~~~   81 (88)
T 1wg1_A           77 TDALL   81 (88)
T ss_dssp             CCCCC
T ss_pred             CCceE
Confidence            76654

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.55  E-value=2.5e-14  Score=112.55  Aligned_cols=75  Identities=20%  Similarity=0.330  Sum_probs=67.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++++|+  |.||+..+|+++|+++|+.||.|++|+|....    +| +|||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus        28 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~  101 (107)
T 3ulh_A           28 TGGKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG-TADVHFERKADALKAMKQYNGVPLDGR---PMN  101 (107)
T ss_dssp             CSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEE-EEEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcce-EEEEEECCHHHHHHHHHHhCCCEeCCc---EEE
Confidence            466666  89999999999999999999999999987543    34 499999999999999999999999998   999


Q ss_pred             EEeec
Q 019494          210 ISYSR  214 (340)
Q Consensus       210 v~~ak  214 (340)
                      |+|++
T Consensus       102 V~~a~  106 (107)
T 3ulh_A          102 IQLVT  106 (107)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99985

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.55  E-value=4e-15  Score=115.23  Aligned_cols=81  Identities=16%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCc--eeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCC
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGF--VHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE   75 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~--V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~   75 (340)
                      .+.|.-|||+|++.  +||+|+++|++||.  |.+|++++    +.+++||||+|.+.++|++|++.|||...     +-
T Consensus         6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~-----~~   80 (95)
T 2lkz_A            6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHP-----PL   80 (95)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSS-----CE
T ss_pred             CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCC-----Cc
Confidence            36788899999984  49999999999995  67888776    34677999999999999999999999751     11


Q ss_pred             CCCCceEEEeeccC
Q 019494           76 NMGPCTLRITYSAH   89 (340)
Q Consensus        76 ~~~~~~l~v~~s~~   89 (340)
                      .+.|++|+|+||+.
T Consensus        81 ~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           81 KIDGKTIGVDFAKS   94 (95)
T ss_dssp             EETTEEEEEEECCC
T ss_pred             eECCEEEEEEEccC
Confidence            15799999999875

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=8.9e-15  Score=114.51  Aligned_cols=79  Identities=11%  Similarity=0.139  Sum_probs=69.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCe-eCCCCccE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCK  207 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~-i~~~~~~~  207 (340)
                      ++.+|+  |+||+.++|+++|+++|+. ||.|++|+|..+.    +|+ |||+|.+.++|.+|++.|||.. |.|+   .
T Consensus         8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~g~---~   81 (104)
T 2dhg_A            8 PEYSLF--VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGY-GFVKFTDELEQKRALTECQGAVGLGSK---P   81 (104)
T ss_dssp             CCCCEE--EECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEE-EEEEESCHHHHHHHHHHTTTCCSSSSS---C
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHHHccCCcccCCE---e
Confidence            355666  8999999999999999999 9999999987642    455 9999999999999999999999 9998   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|.|++.+..
T Consensus        82 l~v~~a~~~~~   92 (104)
T 2dhg_A           82 VRLSVAIPKAS   92 (104)
T ss_dssp             CCCCBCCCCCS
T ss_pred             EEEEEccCCCc
Confidence            99999876653

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.55  E-value=8.5e-15  Score=113.07  Aligned_cols=77  Identities=25%  Similarity=0.313  Sum_probs=67.6

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      |..+|||++++.  +|++|+++|++||+|.+|.+.+.    .+++||||+|.+.++|.+|++.|||..|         .|
T Consensus         1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g   71 (96)
T 2x1f_A            1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---------GS   71 (96)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---------CC
Confidence            567899999984  48999999999999999988762    3467899999999999999999999885         69


Q ss_pred             ceEEEeeccCCc
Q 019494           80 CTLRITYSAHTD   91 (340)
Q Consensus        80 ~~l~v~~s~~~~   91 (340)
                      +.|+|++++.+.
T Consensus        72 ~~l~V~~a~~~~   83 (96)
T 2x1f_A           72 RFLKCGYSSNSD   83 (96)
T ss_dssp             EECEEEECSCSS
T ss_pred             eEEEEEEcCCCC
Confidence            999999998764

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.55  E-value=2e-14  Score=114.62  Aligned_cols=78  Identities=24%  Similarity=0.451  Sum_probs=69.8

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC--CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~--~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      ++++|+  |+||+..+|+++|+++|+.||.|.+|.|...  .+|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.
T Consensus         7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~   80 (115)
T 3lqv_A            7 VNRILY--IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGT-AYVVYEDIFDAKNAVDHLSGFNVSNR---YLVVL   80 (115)
T ss_dssp             CCSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTC-EEEEESSHHHHHHHHHHHTTCBSSSC---BCEEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence            366766  8999999999999999999999999998753  3566 99999999999999999999999998   99999


Q ss_pred             eecCCC
Q 019494          212 YSRHTD  217 (340)
Q Consensus       212 ~ak~~~  217 (340)
                      |+++..
T Consensus        81 ~a~~~~   86 (115)
T 3lqv_A           81 YYNANR   86 (115)
T ss_dssp             ECCHHH
T ss_pred             EecCCh
Confidence            997643

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=110.94  Aligned_cols=76  Identities=20%  Similarity=0.251  Sum_probs=66.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+++.    ..+++|||+|.+.++|++|++.|||..|         .|
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   74 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---------AG   74 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---------SS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence            467899999884  48999999999999999998762    3467899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        75 ~~l~V~~a~~~   85 (95)
T 2dnz_A           75 RPMRVGHVTER   85 (95)
T ss_dssp             SCCEEEESSCC
T ss_pred             cEEEEEEcccc
Confidence            99999998865

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=1.5e-14  Score=114.92  Aligned_cols=79  Identities=28%  Similarity=0.397  Sum_probs=69.4

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCee--------EEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--------KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI  200 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~--------~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i  200 (340)
                      ++++|+  |.||+..+|+++|+++|++||.|.        +|+|+..+     +|+ |||+|.+.++|.+|++.|||..|
T Consensus        14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~   90 (113)
T 2cpe_A           14 DNSAIY--VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD-ATVSYEDPPTAKAAVEWFDGKDF   90 (113)
T ss_dssp             CCCEEE--EECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSE-EEEEBSSHHHHHHHHHHHTTCEE
T ss_pred             CCCEEE--EcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeE-EEEEECCHHHHHHHHHHcCCCcc
Confidence            466766  899999999999999999999999        68876542     465 99999999999999999999999


Q ss_pred             CCCCccEEEEEeecCCCC
Q 019494          201 YDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       201 ~~~~~~~l~v~~ak~~~~  218 (340)
                      .++   .|+|.|++....
T Consensus        91 ~g~---~l~V~~a~~~~~  105 (113)
T 2cpe_A           91 QGS---KLKVSLARKKPP  105 (113)
T ss_dssp             TTE---ECEEECSSCCCC
T ss_pred             CCC---EEEEEECCCCCC
Confidence            998   999999887653

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.1e-14  Score=110.74  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=68.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-EEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +++|+  |+||++++|+++|+++|++||.|++|+ |..++ .|. |||+|.+.++|.+|++.|||..|.|+   .|+|+|
T Consensus        15 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~   88 (96)
T 2e44_A           15 IRKLQ--IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV-VNVTYSSKDQARQALDKLNGFQLENF---TLKVAY   88 (96)
T ss_dssp             CCCEE--EEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE-EEEEESSHHHHHHHHHHHTTCBCSSC---BCEEEE
T ss_pred             CCEEE--EEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence            45566  899999999999999999999999994 66543 344 99999999999999999999999998   999999


Q ss_pred             ecCCC
Q 019494          213 SRHTD  217 (340)
Q Consensus       213 ak~~~  217 (340)
                      +++++
T Consensus        89 a~~~~   93 (96)
T 2e44_A           89 IPDEM   93 (96)
T ss_dssp             CCCCC
T ss_pred             cCccc
Confidence            98764

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=1.6e-14  Score=113.12  Aligned_cols=76  Identities=12%  Similarity=0.309  Sum_probs=67.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      .++|+  |.||+..+|+++|+++|+.|| |++|.|...      .+|+ |||+|.+.++|.+|+ .|||..|.++   .|
T Consensus        15 ~~~l~--V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l   86 (104)
T 1wi8_A           15 PYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNK---RI   86 (104)
T ss_dssp             CEEEE--EESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSC-EEEEESSHHHHHHHH-GGGTCEETTE---EC
T ss_pred             CCEEE--EeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeE-EEEEECCHHHHHHHH-hcCCCEeCCc---EE
Confidence            45555  899999999999999999999 999998743      2566 999999999999999 9999999998   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.|++.+..
T Consensus        87 ~V~~a~~~~~   96 (104)
T 1wi8_A           87 RVDVADQAQD   96 (104)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEccCCCC
Confidence            9999987653

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=4.7e-14  Score=109.12  Aligned_cols=76  Identities=22%  Similarity=0.351  Sum_probs=67.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++++|+  |+|+  ++|+++|+++|++||.|++|.|.. .+|+ |||+|.+.++|.+|++.|||..|.++   .|+|.|+
T Consensus        14 ~~~~l~--V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~v~~a   84 (97)
T 1x5p_A           14 KGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNIA   84 (97)
T ss_dssp             CCSEEE--EECS--SCCHHHHHHHHTTTSCEEEEEEET-TTTE-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEECC
T ss_pred             CCCEEE--EcCC--CCCHHHHHHHHhhCCCEEEEEecC-CCCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEEC
Confidence            466777  7886  899999999999999999999964 4465 99999999999999999999999998   9999999


Q ss_pred             cCCCC
Q 019494          214 RHTDL  218 (340)
Q Consensus       214 k~~~~  218 (340)
                      +....
T Consensus        85 ~~~~~   89 (97)
T 1x5p_A           85 RKQPM   89 (97)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            87653

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=109.85  Aligned_cols=76  Identities=14%  Similarity=0.221  Sum_probs=64.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+.+.    ..+++|||+|.+.++|++|++.|||..+         .|
T Consensus         5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g   75 (87)
T 3bs9_A            5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---------GG   75 (87)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            456789999884  48999999999999999988762    2456899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        76 ~~l~v~~a~~k   86 (87)
T 3bs9_A           76 RQIRTNWATRK   86 (87)
T ss_dssp             EECEEEEEC--
T ss_pred             eEEEEEecCCC
Confidence            99999998753

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=1.5e-14  Score=111.98  Aligned_cols=75  Identities=17%  Similarity=0.210  Sum_probs=67.0

Q ss_pred             cccccccCCCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            5 WPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         5 ~~~~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      .+..+|||+++.++|++|+++|++||+|.+|.+.+  .+++|||+|.+.++|.+|++.|||..|         .|++|+|
T Consensus        13 ~~~~~l~V~n~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~v   81 (97)
T 1x5p_A           13 RKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQV---------ESVQLKV   81 (97)
T ss_dssp             CCCSEEEEECSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEE---------TTEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEE
Confidence            35678999998888999999999999999998853  567899999999999999999999984         6999999


Q ss_pred             eeccCC
Q 019494           85 TYSAHT   90 (340)
Q Consensus        85 ~~s~~~   90 (340)
                      ++++.+
T Consensus        82 ~~a~~~   87 (97)
T 1x5p_A           82 NIARKQ   87 (97)
T ss_dssp             ECCSSC
T ss_pred             EECCCC
Confidence            999865

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.53  E-value=5.3e-15  Score=113.80  Aligned_cols=76  Identities=18%  Similarity=0.270  Sum_probs=65.1

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      +.++|+  |.||+..+|+++|+++|++||.|.+++++..     .+|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~l   87 (95)
T 2ek1_A           14 GPTVIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KV   87 (95)
T ss_dssp             -CEEEE--EECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeE-EEEEECCHHHHHHHHHHhCCCeECCc---EE
Confidence            356666  8999999999999999999999987776542     2355 99999999999999999999999998   99


Q ss_pred             EEEeecC
Q 019494          209 HISYSRH  215 (340)
Q Consensus       209 ~v~~ak~  215 (340)
                      +|++++.
T Consensus        88 ~v~~a~s   94 (95)
T 2ek1_A           88 KLSGPSS   94 (95)
T ss_dssp             EEECCC-
T ss_pred             EEEeccC
Confidence            9998753

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.53  E-value=1e-14  Score=109.76  Aligned_cols=75  Identities=17%  Similarity=0.124  Sum_probs=65.1

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .+..+|||++++.  +|++|+++|++||+|.+|.+.+.    ..+++|||+|.+.++|.+|++.|||..+         .
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~   75 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------F   75 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence            3567889999985  48999999999999999988652    3466899999999999999999999985         6


Q ss_pred             CceEEEeecc
Q 019494           79 PCTLRITYSA   88 (340)
Q Consensus        79 ~~~l~v~~s~   88 (340)
                      |++|+|++++
T Consensus        76 g~~l~v~~ak   85 (85)
T 3mdf_A           76 GRTIRVNLAK   85 (85)
T ss_dssp             TEECEEEECC
T ss_pred             CcEEEEEEcC
Confidence            9999999975

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=1.7e-14  Score=113.88  Aligned_cols=79  Identities=14%  Similarity=0.243  Sum_probs=68.8

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCC-eeEEEEEc------CCCCeEEEEEcCChHHHHHHHHHhc--CCeeCCCC
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFD------KNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGG  204 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~------~~~g~~afV~F~~~~~A~~A~~~ln--g~~i~~~~  204 (340)
                      +++.|+  |+||+.++|+++|+++|+.||. |+.|.+..      +.+|+ |||+|.+.++|.+|++.||  +..|.|+ 
T Consensus         7 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~g~~~~~g~-   82 (109)
T 2dis_A            7 GNCRLF--IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH-   82 (109)
T ss_dssp             CSEEEE--EECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCE-EEEEESSHHHHHHHHTTTTTCCSCBTTB-
T ss_pred             CCCEEE--EeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcE-EEEEecCHHHHHHHHHHhhCCCceecCC-
Confidence            456666  8999999999999999999998 99999872      34576 9999999999999999996  5899998 


Q ss_pred             ccEEEEEeecCCCC
Q 019494          205 FCKLHISYSRHTDL  218 (340)
Q Consensus       205 ~~~l~v~~ak~~~~  218 (340)
                        .|+|.|+++...
T Consensus        83 --~l~V~~a~~~~~   94 (109)
T 2dis_A           83 --QIAVDWAEPEID   94 (109)
T ss_dssp             --CCEEEESCSSCS
T ss_pred             --eEEEEEcCCCCC
Confidence              999999987653

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.53  E-value=9.5e-15  Score=107.39  Aligned_cols=69  Identities=13%  Similarity=0.228  Sum_probs=62.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+|+||+.++|+++|+++|++||.|.+|.+...+     +|+ |||+|.+.++|.+|++ |||..|.|+   .|+|.+|
T Consensus         2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~-~~~~~~~g~---~l~v~~A   75 (75)
T 2mss_A            2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF-GFVTFESEDIVEKVCE-IHFHEINNK---MVECKKA   75 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBE-EEEECSCHHHHHHHHS-SSCCCSSSC---CCEEECC
T ss_pred             EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHH-CCCCEECCE---EEEEEeC
Confidence            5599999999999999999999999999986543     465 9999999999999998 999999999   9999875

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.53  E-value=1.7e-14  Score=111.52  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=65.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC--Cce
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG--PCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~--~~~   81 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+.+.  ++||||+|.+.++|++|++.|||..|         .  +++
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~---------~~~g~~   84 (97)
T 1why_A           16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPL---------GGPDRR   84 (97)
T ss_dssp             CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBC---------SSSSCB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEe---------CCCCcE
Confidence            567899999884  48999999999999999988763  56899999999999999999999985         5  899


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|+|++.+
T Consensus        85 l~V~~a~~~   93 (97)
T 1why_A           85 LRVDFAKSG   93 (97)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEECCCC
Confidence            999999865

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.2e-14  Score=109.44  Aligned_cols=76  Identities=21%  Similarity=0.361  Sum_probs=64.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      ++.|+  |+||+.++|+++|+++|+.||.|.+| +..+..|.+|||+|.+.++|.+|++ |||..|.|+   .|+|.+++
T Consensus         8 ~~~l~--V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~---~l~V~~a~   80 (94)
T 2e5g_A            8 LRSVF--VSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGH---RLRVRPRE   80 (94)
T ss_dssp             CCEEE--EECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTE---ECCCBCSC
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCE---EEEEEECC
Confidence            45666  89999999999999999999999998 4443333259999999999999999 999999998   99999876


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ...
T Consensus        81 ~~~   83 (94)
T 2e5g_A           81 QKE   83 (94)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            544

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.53  E-value=1.8e-14  Score=107.84  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=64.6

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      .+|||++++.+  |++|+++|++||+|.+|.+++.    .++++|||+|.+.++|++|++.|||..+         .|++
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---------~g~~   72 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---------NGRP   72 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---------CCcE
Confidence            46888888854  8999999999999999988752    3467899999999999999999999985         6999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|++++.+
T Consensus        73 l~v~~a~~~   81 (83)
T 3md1_A           73 LRINWAAKL   81 (83)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEecCcC
Confidence            999999865

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=1.9e-14  Score=114.64  Aligned_cols=76  Identities=17%  Similarity=0.328  Sum_probs=68.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|++|+|...     .+|+ |||+|.+.++|.+|+ .|||..|.|+   .|+
T Consensus        25 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~   97 (114)
T 2cq4_A           25 ARTVF--CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI-AYVEFCEIQSVPLAI-GLTGQRLLGV---PII   97 (114)
T ss_dssp             HTEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCC-EEEEESCGGGHHHHH-HHTTEEETTE---EEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcE-EEEEeCcHHHHHHHH-HcCCCEeCCe---EEE
Confidence            45666  8999999999999999999999999998742     3566 999999999999999 9999999998   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.|++...
T Consensus        98 V~~a~~~~  105 (114)
T 2cq4_A           98 VQASQAEK  105 (114)
T ss_dssp             EEEHHHHH
T ss_pred             EEecCCCc
Confidence            99998654

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=4e-15  Score=112.13  Aligned_cols=74  Identities=18%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+.++|+++|+++|++||.|.+|+|...+     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus         4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~~   77 (85)
T 1x4e_A            4 GSSGLY--IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY-GFVDFDSPSAAQKAVTALKASGVQAQ---MA   77 (85)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSE-EEEEESCHHHHHHHHHHHHHHTCCEE---SC
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhcCCeEeeE---EE
Confidence            466766  89999999999999999999999999987542     565 99999999999999999999999988   77


Q ss_pred             EEEee
Q 019494          209 HISYS  213 (340)
Q Consensus       209 ~v~~a  213 (340)
                      +++++
T Consensus        78 ~~~~~   82 (85)
T 1x4e_A           78 KQSGP   82 (85)
T ss_dssp             CSSCC
T ss_pred             eecCC
Confidence            66653

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.53  E-value=2.5e-15  Score=115.26  Aligned_cols=75  Identities=15%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccC-ceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFG-FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG-~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..|||++++.+  |+||+++|++|| +|.+|++++    +.+++||||+|.+.++|++|++.|++...        +.|+
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~--------~~gr   73 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN--------ILGQ   73 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE--------ETTE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE--------ECCE
Confidence            56889888854  999999999999 899998875    34677899999999999999998855332        4799


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|+||+.+
T Consensus        74 ~i~V~~a~~~   83 (91)
T 2lxi_A           74 KVSMHYSDPK   83 (91)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEEEcCCC
Confidence            9999999865

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.53  E-value=2.3e-14  Score=114.64  Aligned_cols=73  Identities=10%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE-----EE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK-----LH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~-----l~  209 (340)
                      ...|+  |.||++++|+++|+++|++||+|+.|.|..+  |+ |||+|++.++|.+|++.|||..|.++   .     |+
T Consensus        16 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~~~~~~i~   87 (115)
T 3beg_B           16 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSH---EGETAYIR   87 (115)
T ss_dssp             -CCEE--EEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SE-EEEEESSHHHHHHHHHHHTTCBCCCT---TSCCCBCE
T ss_pred             CcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CE-EEEEECCHHHHHHHHHHhCCCEECCc---EeeeEEEE
Confidence            34555  8999999999999999999999999999866  65 99999999999999999999999998   6     55


Q ss_pred             EEeecC
Q 019494          210 ISYSRH  215 (340)
Q Consensus       210 v~~ak~  215 (340)
                      |..+++
T Consensus        88 v~~~~~   93 (115)
T 3beg_B           88 VKVDGP   93 (115)
T ss_dssp             EEECC-
T ss_pred             eccCCC
Confidence            555444

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.53  E-value=9.6e-15  Score=113.06  Aligned_cols=76  Identities=16%  Similarity=0.271  Sum_probs=65.9

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .++|+  |.||+..+|+++|+++|+.||.|.+++++..     .+|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus        15 ~~~l~--v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~   88 (98)
T 2cqp_A           15 PTIIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KVK   88 (98)
T ss_dssp             SEEEE--EESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEE-EEEEESCHHHHHHHHHHTTTCEETTE---ECE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCeeCCe---EEE
Confidence            45666  8999999999999999999999987665432     2355 99999999999999999999999998   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |+|++..
T Consensus        89 V~~a~~~   95 (98)
T 2cqp_A           89 LVLGSGP   95 (98)
T ss_dssp             EEESSCS
T ss_pred             EEEcCCC
Confidence            9998754

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=110.82  Aligned_cols=74  Identities=18%  Similarity=0.274  Sum_probs=64.9

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.+  |++|+++|++||+|.+|.+.+.    ..+++|||+|.+.++|++|++.|||..|         .|
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g   85 (94)
T 2e5h_A           15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---------FG   85 (94)
T ss_dssp             CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---------TT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---------CC
Confidence            4568899999854  8999999999999999998762    3466899999999999999999999885         69


Q ss_pred             ceEEEeecc
Q 019494           80 CTLRITYSA   88 (340)
Q Consensus        80 ~~l~v~~s~   88 (340)
                      ++|+|+|++
T Consensus        86 ~~l~v~~ak   94 (94)
T 2e5h_A           86 RVIKASIAI   94 (94)
T ss_dssp             EEEEEEECC
T ss_pred             cEEEEEecC
Confidence            999999985

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=1.8e-14  Score=113.88  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=66.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+.+ +..++||||+|.+.++|++|++.||+..|         .+++|
T Consensus        21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l   91 (109)
T 1x4a_A           21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---------DGYRL   91 (109)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeEE
Confidence            456789999884  4899999999999999998876 33567899999999999999999999984         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        92 ~V~~a~~~   99 (109)
T 1x4a_A           92 RVEFPRSG   99 (109)
T ss_dssp             EEECCCCC
T ss_pred             EEEEcccC
Confidence            99998865

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.53  E-value=1.9e-14  Score=111.66  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=66.6

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+..+|||++++.  +|++|+++|++||+|.+|.+.+  +++||||+|.+.++|++|++.|||..|         .|++|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~---------~g~~l   81 (99)
T 2cpj_A           13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPL---------RGKQL   81 (99)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCB---------TTBCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEe---------CCceE
Confidence            4567899999984  4899999999999999999875  457899999999999999999999985         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        82 ~v~~a~~~   89 (99)
T 2cpj_A           82 RVRFACHS   89 (99)
T ss_dssp             EEEESSCC
T ss_pred             EEEEcCCC
Confidence            99999865

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.6e-14  Score=111.73  Aligned_cols=76  Identities=18%  Similarity=0.264  Sum_probs=66.9

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+.+.  ..++||||+|.+.++|++|++.|||..|         .|++
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~   84 (103)
T 2d9p_A           14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV---------ATKP   84 (103)
T ss_dssp             SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS---------SSSB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe---------CCcE
Confidence            467899999884  48999999999999999988863  4567899999999999999999999984         6999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|++++.+
T Consensus        85 l~V~~a~~~   93 (103)
T 2d9p_A           85 LYVALAQRK   93 (103)
T ss_dssp             CEEEECSSC
T ss_pred             EEEEEeccc
Confidence            999999865

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.52  E-value=4.3e-14  Score=116.35  Aligned_cols=75  Identities=19%  Similarity=0.379  Sum_probs=66.6

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      .++++|+  |+||+..+|+++|+++|++||.|++|+|..+     .+|+ |||+|.+.++|.+|++.|||..|.|+   .
T Consensus        61 ~~~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~  134 (140)
T 2ku7_A           61 TTKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---T  134 (140)
T ss_dssp             SSCCEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSE-EEEEESCHHHHHHHHHHSTEEEETTE---E
T ss_pred             CCCcEEE--EEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence            3466766  8999999999999999999999999998654     3565 99999999999999999999999998   9


Q ss_pred             EEEEee
Q 019494          208 LHISYS  213 (340)
Q Consensus       208 l~v~~a  213 (340)
                      |+|+||
T Consensus       135 l~v~~A  140 (140)
T 2ku7_A          135 IRVNLA  140 (140)
T ss_dssp             EEEEC-
T ss_pred             EEEEeC
Confidence            999985

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.52  E-value=4.1e-14  Score=110.62  Aligned_cols=76  Identities=11%  Similarity=0.316  Sum_probs=67.0

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+.++|+++|+++|+.|| |++|+|...+     +|+ |||+|.+.++|.+|+ .|||..|.++   .|
T Consensus        14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l   85 (103)
T 2dng_A           14 PPYTAY--VGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGF-CYVEFDEVDSLKEAL-TYDGALLGDR---SL   85 (103)
T ss_dssp             SCEEEE--EESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHG-GGTTCEETTE---EC
T ss_pred             CCeEEE--EeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceE-EEEEECCHHHHHHHH-hhCCCeECCe---EE
Confidence            355666  899999999999999999997 9999987543     355 999999999999999 8999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|.|++...
T Consensus        86 ~V~~a~~~~   94 (103)
T 2dng_A           86 RVDIAEGRK   94 (103)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEecCCC
Confidence            999988754

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.52  E-value=1.7e-14  Score=117.99  Aligned_cols=78  Identities=13%  Similarity=0.328  Sum_probs=68.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--EEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCC----eeCC
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGH----CIYD  202 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~----~i~~  202 (340)
                      ++++|+  |+||++++|+++|+++|++||.|..  |+|+.++     +|| |||+|.+. +|.+|++.|||.    .|.|
T Consensus        22 ~~~~lf--V~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~-aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g   97 (131)
T 2m2b_A           22 ANDTII--LRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGF-AFIQLSTI-EAAQLLQILQALHPPLTIDG   97 (131)
T ss_dssp             CCCEEE--ECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSC-EEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceE-EEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence            466766  9999999999999999999999966  8876533     576 99999999 999999999999    9999


Q ss_pred             CCccEEEEEeecCCCC
Q 019494          203 GGFCKLHISYSRHTDL  218 (340)
Q Consensus       203 ~~~~~l~v~~ak~~~~  218 (340)
                      +   .|+|+|++....
T Consensus        98 r---~l~V~~a~~~~~  110 (131)
T 2m2b_A           98 K---TINVEFAKGSKR  110 (131)
T ss_dssp             C---CCCCEECCCSCC
T ss_pred             E---EEEEEECCCCCC
Confidence            9   999999987643

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.52  E-value=2e-14  Score=117.23  Aligned_cols=77  Identities=18%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             cccccccCCCCCC--CHHHHH----HhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~----~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      .+..+|||++++.  +|++|+    ++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..|         
T Consensus        27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---------   97 (127)
T 2a3j_A           27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF---------   97 (127)
T ss_dssp             SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC---------
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe---------
Confidence            4667899999984  366655    7999999999998865 34677899999999999999999999985         


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .|++|+|+|++.+
T Consensus        98 ~gr~l~V~~a~~~  110 (127)
T 2a3j_A           98 QGNPLVITFSETP  110 (127)
T ss_dssp             TTSCCEEEECCCC
T ss_pred             CCCEEEEEEccCc
Confidence            5999999999865

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.52  E-value=9.2e-15  Score=113.92  Aligned_cols=76  Identities=12%  Similarity=0.333  Sum_probs=66.4

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ..++|+  |+||+.++|+++|+++|+.|| |.+|+|...+      +|+ |||+|.+.++|.+|+ .|||..|.|+   .
T Consensus        18 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~Ai-~l~g~~~~g~---~   89 (100)
T 2j76_E           18 PPYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNR---R   89 (100)
T ss_dssp             --CEEE--ESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSC-EEEEECCHHHHHHHH-HTTTCCBTTB---C
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeE-EEEEECCHHHHHHHH-hcCCCEECCe---E
Confidence            356666  999999999999999999999 9999987543      576 999999999999999 8999999998   9


Q ss_pred             EEEEeecCCC
Q 019494          208 LHISYSRHTD  217 (340)
Q Consensus       208 l~v~~ak~~~  217 (340)
                      |+|++++.+.
T Consensus        90 l~V~~a~~~~   99 (100)
T 2j76_E           90 IRVDVADQAQ   99 (100)
T ss_dssp             CCCEECCCSC
T ss_pred             EEEEeccCCC
Confidence            9999987653

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=4.1e-14  Score=110.96  Aligned_cols=78  Identities=14%  Similarity=0.313  Sum_probs=69.0

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      +.++|+  |.||+..+|+++|+++|++||.|++|+|..++     +|+ |||+|.+.++|.+|++. |+..|.++   .|
T Consensus        15 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g~---~l   87 (105)
T 2dh8_A           15 EIGKLF--VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGF-GFVKFKDPNCVGTVLAS-RPHTLDGR---NI   87 (105)
T ss_dssp             SSSEEC--CBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSTTHHHHHHHH-CSEEETTE---EE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceE-EEEEECCHHHHHHHHHh-CCCeECCE---EE
Confidence            456666  99999999999999999999999999987642     355 99999999999999999 99999998   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.+++++..
T Consensus        88 ~V~~a~~~~~   97 (105)
T 2dh8_A           88 DPKPCTPRGM   97 (105)
T ss_dssp             BCCCSCCSSC
T ss_pred             EEEEccCCCC
Confidence            9999887653

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=2.8e-14  Score=111.54  Aligned_cols=76  Identities=16%  Similarity=0.206  Sum_probs=66.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+++  ..+++||||+|.+.++|++|++.|||..|         .|++
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~   84 (103)
T 2cqi_A           14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI---------LGKE   84 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE---------TTEE
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc---------CCCe
Confidence            457889999885  4899999999999999998877  23567899999999999999999999985         6999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|++++.+
T Consensus        85 l~V~~a~~~   93 (103)
T 2cqi_A           85 VKVNWATTP   93 (103)
T ss_dssp             EEEEECCCT
T ss_pred             EEEEECCCC
Confidence            999999865

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.52  E-value=2.3e-14  Score=111.09  Aligned_cols=77  Identities=21%  Similarity=0.161  Sum_probs=67.1

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .+..+|||.+++.  +|++|+++|+.||+|.+|.+.+    +..++||||+|.+.++|++|++.|||..|         .
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~   76 (99)
T 1whw_A            6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---------Q   76 (99)
T ss_dssp             CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---------S
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence            3567899999884  4899999999999999998876    23567899999999999999999999884         6


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      |++|+|++++.+
T Consensus        77 g~~l~V~~a~~~   88 (99)
T 1whw_A           77 GRMLHVLPSTIK   88 (99)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CcEEEEEEcCCC
Confidence            999999999865

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=3.6e-14  Score=112.95  Aligned_cols=80  Identities=15%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCC-----
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGG-----  204 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~-----  204 (340)
                      +.+.|+  |.||+..+|+++|+++|+.||.|++|+|..+.    +|+ |||+|.+.++|.+|++.|||..|.+..     
T Consensus        24 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~  100 (114)
T 1x5o_A           24 DPTNLY--ISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGV-GFARMESTEKCEAVIGHFNGKFIKTPPGVSAP  100 (114)
T ss_dssp             CTTEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEE-EEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceE-EEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence            356666  89999999999999999999999999987643    355 999999999999999999999994320     


Q ss_pred             ccEEEEEeecCC
Q 019494          205 FCKLHISYSRHT  216 (340)
Q Consensus       205 ~~~l~v~~ak~~  216 (340)
                      ...|+|.|+++.
T Consensus       101 ~~~l~v~~a~p~  112 (114)
T 1x5o_A          101 TEPLLCKFSGPS  112 (114)
T ss_dssp             SSCBEEEECCCS
T ss_pred             CCceeEEccCCC
Confidence            128999998854

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3.5e-14  Score=108.26  Aligned_cols=73  Identities=14%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+..+|||++++.+  |++|+++|++||+|.+|.+.    ++||||+|.+.++|++|++.|||..|         .|++|
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l   72 (90)
T 2dnq_A            6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKL---------HGVNI   72 (90)
T ss_dssp             SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBC---------SSCBC
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCcc---------CCcEE
Confidence            35678999998854  89999999999999999887    35899999999999999999999884         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        73 ~v~~a~~~   80 (90)
T 2dnq_A           73 NVEASKNK   80 (90)
T ss_dssp             EEECSSCC
T ss_pred             EEEECCCC
Confidence            99998865

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.51  E-value=4.5e-14  Score=106.80  Aligned_cols=73  Identities=12%  Similarity=0.245  Sum_probs=63.8

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      +.++|+  |+||+.++|+++|+++|++||.|.+|++..++     +|+ |||+|.+.++|.+|++ +++..|.|+   .|
T Consensus        10 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~i   82 (87)
T 3s7r_A           10 DAGKMF--VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF-GFILFKDAASVEKVLD-QKEHRLDGR---VI   82 (87)
T ss_dssp             CTTEEE--EECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSTHHHHHHHH-SSCEEETTE---EE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccE-EEEEECCHHHHHHHHH-hCCCEECCE---EE
Confidence            466766  89999999999999999999999999987542     355 9999999999999996 488889998   99


Q ss_pred             EEEee
Q 019494          209 HISYS  213 (340)
Q Consensus       209 ~v~~a  213 (340)
                      +|++|
T Consensus        83 ~v~~A   87 (87)
T 3s7r_A           83 DPKKA   87 (87)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99875

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.51  E-value=2.5e-14  Score=115.59  Aligned_cols=77  Identities=18%  Similarity=0.323  Sum_probs=67.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+.++|+++|+++|++||.|++|+|..++     +|+ |||+|.+.++|.+|+ .|||..|.|+   .|+
T Consensus        36 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~  108 (124)
T 2jwn_A           36 KRSVY--VGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY-AYIEFAERNSVDAAV-AMDETVFRGR---TIK  108 (124)
T ss_dssp             HTEEE--EEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEE-EEEEESSHHHHHHHH-TTTTCEETTE---ECE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccE-EEEEECCHHHHHHHH-hcCCCeECCe---EEE
Confidence            45666  89999999999999999999999999987532     455 999999999999999 8999999998   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |+|++....
T Consensus       109 V~~a~~~~~  117 (124)
T 2jwn_A          109 VLPKRTNMP  117 (124)
T ss_dssp             EEESSCCCS
T ss_pred             EEECCCCCC
Confidence            999886543

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=3e-14  Score=113.53  Aligned_cols=79  Identities=24%  Similarity=0.367  Sum_probs=68.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCe----eEEEEEc-CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v----~~v~i~~-~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+.++|+++|+++|+.||.|    ..+.+.. +.+|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        24 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l   97 (115)
T 2cpx_A           24 PNKVLY--LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQ-AFITFPNKEIAWQALHLVNGYKLYGK---IL   97 (115)
T ss_dssp             CCSEEE--EECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSE-EEEECSSHHHHHHHHHHSTTCBCSSC---BC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EE
Confidence            467777  89999999999999999999998    5555553 33576 99999999999999999999999998   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.|++....
T Consensus        98 ~v~~a~~~~~  107 (115)
T 2cpx_A           98 VIEFGKNKKQ  107 (115)
T ss_dssp             EEEECCCCSC
T ss_pred             EEEEccCCCC
Confidence            9999987654

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=2.2e-14  Score=111.81  Aligned_cols=76  Identities=16%  Similarity=0.280  Sum_probs=66.7

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.+  |++|+++|++||+|.+|.+++.    ..++||||+|.+.++|++|++.|||..|         .|
T Consensus        11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g   81 (102)
T 1x5s_A           11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---------DG   81 (102)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---------TS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            4578999998854  8999999999999999998762    3566899999999999999999999984         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        82 ~~l~v~~a~~~   92 (102)
T 1x5s_A           82 RQIRVDQAGKS   92 (102)
T ss_dssp             CCCEEEEEECC
T ss_pred             eEEEEEECCCC
Confidence            99999999865

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.51  E-value=4.4e-14  Score=107.83  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +..+|+  |+||++++|+++|+++|++||.|++|+|..+++|+ |||+|++.++|.    .|++..+.++ ...|+|.++
T Consensus        10 ~~~~l~--V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGf-aFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~a   81 (89)
T 3d2w_A           10 HGSKVF--VGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAF-AFVTFADDKVAQ----SLCGEDLIIK-GISVHISNA   81 (89)
T ss_dssp             -CCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSE-EEEEESCHHHHH----HHTTCEEEET-TEEEEEEEC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCE-EEEEECCHHHHH----HHcCCCcccC-CEEEEEEEc
Confidence            356666  89999999999999999999999999998888887 999999999998    3677766532 239999998


Q ss_pred             cCCCC
Q 019494          214 RHTDL  218 (340)
Q Consensus       214 k~~~~  218 (340)
                      +++..
T Consensus        82 ~~k~~   86 (89)
T 3d2w_A           82 EPKHN   86 (89)
T ss_dssp             C----
T ss_pred             CCCCc
Confidence            87543

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=5.6e-14  Score=109.38  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=64.9

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++++|+  |.||+.++|+++|+++|++||.|   ++..+    .+|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus        14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~   84 (101)
T 2fc9_A           14 ESKTLV--LSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGY-AFIEFASFEDAKEALNSCNKREIEGR---AIR   84 (101)
T ss_dssp             CCSEEE--EESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSE-EEEECSSHHHHHHHHHHTSSEEETTE---EEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeE-EEEEECCHHHHHHHHHHhCCCEeCCe---EEE
Confidence            467777  89999999999999999999987   33322    3565 99999999999999999999999998   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |+|++...
T Consensus        85 v~~a~~~~   92 (101)
T 2fc9_A           85 LELQGPRG   92 (101)
T ss_dssp             EEECSSCC
T ss_pred             EEEcCCCC
Confidence            99988764

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=1.8e-14  Score=114.15  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+.+.  .+++||||+|.+.++|++|++.|||..|         .|++
T Consensus        28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~   98 (109)
T 2err_A           28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGRK   98 (109)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE---------TTEE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE---------CCEE
Confidence            456789999885  48999999999999999988762  3567899999999999999999999985         6999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|++++.+
T Consensus        99 l~V~~a~~~  107 (109)
T 2err_A           99 IEVNNATAR  107 (109)
T ss_dssp             CEEEECCCS
T ss_pred             EEEEECCCC
Confidence            999998865

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=3.2e-14  Score=110.58  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=66.1

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +..+|||++++.  +|+||+++|++||+|.+|.+...   ..+++|||+|.+.++|++|++.|||..|         .|+
T Consensus        16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~   86 (100)
T 2do4_A           16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI---------KEN   86 (100)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES---------SSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE---------CCE
Confidence            456889999984  48999999999999999988762   3457899999999999999999999884         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++++.+
T Consensus        87 ~l~v~~a~~~   96 (100)
T 2do4_A           87 IIKVAISNSG   96 (100)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEECCCC
Confidence            9999998865

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.51  E-value=2.8e-14  Score=110.39  Aligned_cols=77  Identities=19%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee-------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE   75 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~-------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~   75 (340)
                      .+..+|||++++.  +|++|+++|++||+|.+|.+.+.       ..++||||+|.+.++|++|++.|||..|       
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~-------   75 (98)
T 2cpf_A            3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV-------   75 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE-------
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee-------
Confidence            3567899999984  48999999999999999988752       2357899999999999999999999985       


Q ss_pred             CCCCceEEEeeccCC
Q 019494           76 NMGPCTLRITYSAHT   90 (340)
Q Consensus        76 ~~~~~~l~v~~s~~~   90 (340)
                        .|++|+|++++.+
T Consensus        76 --~g~~l~V~~a~~~   88 (98)
T 2cpf_A           76 --DGHKLEVRISERA   88 (98)
T ss_dssp             --TTEECEEECSSCS
T ss_pred             --CCeEEEEEEccCC
Confidence              6999999998865

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=3.9e-14  Score=110.65  Aligned_cols=77  Identities=13%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+++.  ..+++|||+|.+.++|++|++.|||..|         .|++
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~   84 (103)
T 2cq3_A           14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGRK   84 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE---------TTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEE
Confidence            457889999884  48999999999999999998863  3467899999999999999999999985         6999


Q ss_pred             EEEeeccCCc
Q 019494           82 LRITYSAHTD   91 (340)
Q Consensus        82 l~v~~s~~~~   91 (340)
                      |+|++++.+.
T Consensus        85 l~v~~a~~~~   94 (103)
T 2cq3_A           85 IEVNNATARV   94 (103)
T ss_dssp             CEEEECCSSC
T ss_pred             EEEEEcccCC
Confidence            9999998653

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.51  E-value=2.5e-14  Score=109.33  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=66.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+.+.  ..+++|||+|.+.++|++|++.|||..|         .|++
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---------~g~~   77 (92)
T 2dgv_A            7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKL---------SGRE   77 (92)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCB---------TTBC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCcE
Confidence            457899999985  48999999999999999988762  3467899999999999999999999985         6999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|++++..
T Consensus        78 l~v~~a~~~   86 (92)
T 2dgv_A           78 IDVRIDRNA   86 (92)
T ss_dssp             CCCEECSCC
T ss_pred             EEEEEcCCC
Confidence            999998865

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=2.9e-14  Score=111.99  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|..|.|...    .+|+ |||+|.+.++|.+|++ +||..|.|+   .|+|
T Consensus        11 ~~~lf--V~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~-aFV~F~~~e~a~~Ai~-~~~~~~~gr---~l~V   83 (103)
T 1s79_A           11 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVE-TPGQKYKET---DLLI   83 (103)
T ss_dssp             GGCEE--EECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCE-EEEEESSHHHHHHHHT-SSCCCCTTT---TCEE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccE-EEEEECCHHHHHHHHH-cCCCEECCE---EEEE
Confidence            55666  8999999999999999999999999998753    3576 9999999999999999 899999999   9999


Q ss_pred             EeecC
Q 019494          211 SYSRH  215 (340)
Q Consensus       211 ~~ak~  215 (340)
                      .+++.
T Consensus        84 ~~~~~   88 (103)
T 1s79_A           84 LFKDD   88 (103)
T ss_dssp             EEHHH
T ss_pred             EEchH
Confidence            98765

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=2.4e-14  Score=111.87  Aligned_cols=77  Identities=21%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .+..+|||++++.  +|++|+++|++||+|.+|.+.+    +..+++|||+|.+.++|++|++.|||..|         .
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~   81 (103)
T 2dnm_A           11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---------D   81 (103)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---------T
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence            4567899999985  4899999999999999998876    23467899999999999999999999985         6


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      |++|+|++++..
T Consensus        82 g~~l~V~~a~~~   93 (103)
T 2dnm_A           82 GRELRVQVARYG   93 (103)
T ss_dssp             TBCCEEEECSSC
T ss_pred             CcEEEEEECCcC
Confidence            999999999865

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.7e-14  Score=109.43  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=65.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+++    +..++||||+|.+.++|++|++ ||+..|         .|
T Consensus         9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---------~g   78 (99)
T 2dgs_A            9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---------MG   78 (99)
T ss_dssp             SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---------CC
Confidence            457889999884  4899999999999999999876    2356789999999999999998 999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        79 ~~l~V~~a~~~   89 (99)
T 2dgs_A           79 KKVEVKRAEPR   89 (99)
T ss_dssp             CBCEEEECCCC
T ss_pred             eEEEEEECCCC
Confidence            99999999865

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.51  E-value=6.1e-15  Score=132.34  Aligned_cols=75  Identities=16%  Similarity=0.188  Sum_probs=67.5

Q ss_pred             EEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      |+|+||++++|+++|+++|++||  +|++|+|+..+     +|| |||+|.+.++|.+||+.|||..|.++   .|+|.|
T Consensus        71 lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGf-aFV~f~~~~~a~~Ai~~lng~~~~Gr---~l~V~~  146 (229)
T 3q2s_C           71 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---NPVVTP  146 (229)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEE-EEEEESCTTHHHHHHTTSTTSCBTTB---CCEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCeECCE---EeEEEE
Confidence            44999999999999999999999  99999987542     455 99999999999999999999999999   999999


Q ss_pred             ecCCCC
Q 019494          213 SRHTDL  218 (340)
Q Consensus       213 ak~~~~  218 (340)
                      ++...+
T Consensus       147 a~~~~~  152 (229)
T 3q2s_C          147 VNKQFL  152 (229)
T ss_dssp             CCHHHH
T ss_pred             CCCCcc
Confidence            986643

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=2.7e-14  Score=109.72  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+.+.    ..+++|||+|.+.++|++|++.|||..|         .|
T Consensus        14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g   84 (95)
T 2cqc_A           14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------DG   84 (95)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            567889999884  48999999999999999988762    3456899999999999999999999885         69


Q ss_pred             ceEEEeeccC
Q 019494           80 CTLRITYSAH   89 (340)
Q Consensus        80 ~~l~v~~s~~   89 (340)
                      ++|+|++++.
T Consensus        85 ~~l~v~~a~~   94 (95)
T 2cqc_A           85 RRIRVSGPSS   94 (95)
T ss_dssp             EEEEEECCSC
T ss_pred             EEEEEEecCC
Confidence            9999999874

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.50  E-value=1.3e-14  Score=115.58  Aligned_cols=75  Identities=7%  Similarity=-0.032  Sum_probs=65.1

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccC-ceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFG-FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG-~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      -.+|||+|++.  +|+||+++|++|| +|..+.+..+.+++||||+|.+.++|++|++.|||..|         .|++|+
T Consensus        28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l---------~Gr~i~   98 (111)
T 2jvr_A           28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEF---------RGSVIT   98 (111)
T ss_dssp             CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEE---------TTEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEE
Confidence            35889999884  4899999999999 99999886545667899999999999999999999985         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |++++..
T Consensus        99 V~~a~~~  105 (111)
T 2jvr_A           99 VERDDNP  105 (111)
T ss_dssp             EEESCC-
T ss_pred             EEECCCC
Confidence            9998743

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.50  E-value=4.4e-14  Score=115.46  Aligned_cols=76  Identities=18%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+++    +..++||||+|.+.++|++|++.|||..|         .|
T Consensus        45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---------~g  115 (129)
T 2kxn_B           45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------DG  115 (129)
T ss_dssp             CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            567899999885  4899999999999999998875    24567899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|+|++.+
T Consensus       116 ~~l~V~~a~~~  126 (129)
T 2kxn_B          116 RRIRVDFSITK  126 (129)
T ss_dssp             SCCEESCCSSS
T ss_pred             EEEEEEEecCC
Confidence            99999998865

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.50  E-value=2.8e-14  Score=109.64  Aligned_cols=75  Identities=15%  Similarity=0.102  Sum_probs=65.3

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+.+.   ..+++|||+|.+.++|++|++.|||..|         .|+
T Consensus        15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~   85 (95)
T 2ywk_A           15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL---------YGR   85 (95)
T ss_dssp             GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE---------TTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---------CCC
Confidence            456889999884  48999999999999999988763   2456899999999999999999999985         699


Q ss_pred             eEEEeeccC
Q 019494           81 TLRITYSAH   89 (340)
Q Consensus        81 ~l~v~~s~~   89 (340)
                      +|+|++++.
T Consensus        86 ~l~V~~a~~   94 (95)
T 2ywk_A           86 PINVSGPSS   94 (95)
T ss_dssp             ECEEECCCC
T ss_pred             EEEEEEcCC
Confidence            999999864

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.50  E-value=3.7e-14  Score=110.10  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=64.7

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeE--------EEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHK--------ITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPR   70 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~--------v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~   70 (340)
                      .+..+|||++++.+  |+||+++|++||.|.+        |.+...    ..+++|||+|.+.++|++|++.|||..+  
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~--   88 (99)
T 2la6_A           11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF--   88 (99)
T ss_dssp             CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS--
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--
Confidence            34567899999854  8999999999999999        877752    3467899999999999999999999984  


Q ss_pred             cCCCCCCCCceEEEeecc
Q 019494           71 YLLPENMGPCTLRITYSA   88 (340)
Q Consensus        71 ~~~~~~~~~~~l~v~~s~   88 (340)
                             .|++|+|++++
T Consensus        89 -------~g~~l~V~~A~   99 (99)
T 2la6_A           89 -------SGNPIKVSFAT   99 (99)
T ss_dssp             -------SSSBCEEEECC
T ss_pred             -------CCcEEEEEecC
Confidence                   69999999975

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.50  E-value=2.5e-14  Score=110.24  Aligned_cols=78  Identities=22%  Similarity=0.307  Sum_probs=66.7

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++++|+  |+||+..+|+++|+++|+.||.|..+..-.+.+|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|+
T Consensus        15 ~~~~l~--V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a   88 (96)
T 1fjc_A           15 AARTLL--AKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYT   88 (96)
T ss_dssp             GGGEEE--EESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEE-EEEEESSHHHHHHHHHHTTEEEETTE---EEEEEEC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEc
Confidence            466777  89999999999999999999998877211223465 99999999999999999999999998   9999998


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      +...
T Consensus        89 ~~~~   92 (96)
T 1fjc_A           89 GEKG   92 (96)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            7654

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.50  E-value=5.1e-14  Score=111.55  Aligned_cols=78  Identities=13%  Similarity=0.198  Sum_probs=66.9

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+.++|+++|+++|+.||.|++|+|..++     +|+ |||+|.+.++|.+|++.+ +..|.|+   .|
T Consensus        24 ~~~~lf--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~-afV~f~~~~~A~~Ai~~~-~~~l~g~---~l   96 (109)
T 2rs2_A           24 SGCKMF--IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQS-RHELDSK---TI   96 (109)
T ss_dssp             --CCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTC-EEEEESSHHHHHHHHHSS-CEEETTE---EE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcE-EEEEECCHHHHHHHHHHC-CCcCCCE---EE
Confidence            355666  89999999999999999999999999987542     566 999999999999999986 5889998   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.+++....
T Consensus        97 ~V~~a~~~~~  106 (109)
T 2rs2_A           97 DPKVAFPRRA  106 (109)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEccCCCC
Confidence            9999887653

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.50  E-value=4.9e-14  Score=110.44  Aligned_cols=77  Identities=18%  Similarity=0.279  Sum_probs=65.8

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC-
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP-   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~-   79 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+.+.   ..++||||+|.+.++|++|++.|||..+.        ++ 
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--------gg~   85 (105)
T 2dnh_A           14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM--------PGA   85 (105)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC--------TTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC--------CCC
Confidence            457899999885  48999999999999999988863   23578999999999999999999999862        23 


Q ss_pred             -ceEEEeeccCC
Q 019494           80 -CTLRITYSAHT   90 (340)
Q Consensus        80 -~~l~v~~s~~~   90 (340)
                       ++|+|++++.+
T Consensus        86 ~~~l~V~~a~~~   97 (105)
T 2dnh_A           86 SSSLVVKFADTD   97 (105)
T ss_dssp             SSCCEEEESCSS
T ss_pred             CccEEEEECccC
Confidence             99999999865

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=2.9e-14  Score=111.46  Aligned_cols=76  Identities=14%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+++.    ..++||||+|.+.++|++|++.|||..|         .|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g   84 (103)
T 2cq0_A           14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---------DH   84 (103)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---------TT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---------CC
Confidence            457789999884  48999999999999999988762    3456899999999999999999999985         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        85 ~~l~v~~a~~~   95 (103)
T 2cq0_A           85 LILNVEWAKPS   95 (103)
T ss_dssp             EECEEEESSCC
T ss_pred             cEEEEEECCCC
Confidence            99999998865

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.50  E-value=2.1e-14  Score=121.27  Aligned_cols=78  Identities=15%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      .+.|+  |+||++++|+++|+++|+.||  .|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.|+   .
T Consensus        55 ~~~lf--VgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGf-aFV~f~~~~~A~~Ai~~lng~~~~Gr---~  128 (156)
T 3n9u_C           55 RAAVY--VGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGY-AEVVVASENSVHKLLELLPGKVLNGE---K  128 (156)
T ss_dssp             -CEEE--EECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHSTTCEETTE---E
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---E
Confidence            45555  999999999999999999999  99999987542     455 99999999999999999999999999   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|.+++.+.+
T Consensus       129 l~V~~a~~~~~  139 (156)
T 3n9u_C          129 VDVRPATRQNL  139 (156)
T ss_dssp             CEEEECCHHHH
T ss_pred             eEEEEcCCCcc
Confidence            99999976543

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.50  E-value=2.7e-14  Score=113.96  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=66.1

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.+  |++|+++|++||+|.+|.+++.    ..++||||+|.+.++|++|++.|||..|         .|
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   94 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---------GM   94 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            4468899998854  8999999999999999988762    3456899999999999999999999885         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        95 ~~l~V~~a~~~  105 (115)
T 2cpz_A           95 KRLKVQLKRSK  105 (115)
T ss_dssp             EECEEECCCCS
T ss_pred             EEEEEEEcCCC
Confidence            99999999865

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=2.8e-14  Score=110.29  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=66.4

Q ss_pred             cccccccCCCCCCC--HHHHH----HhhcccCceeEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERA----HVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~----~lF~~fG~V~~v~~~~~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ....+|||++++.+  |++|+    ++|++||+|.+|.+... ..++||||+|.+.++|++|++.|||..|         
T Consensus         7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~---------   77 (96)
T 2dgx_A            7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI---------   77 (96)
T ss_dssp             SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE---------
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEE---------
Confidence            34578999999854  89999    99999999999998852 2266899999999999999999999985         


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .|++|+|++++..
T Consensus        78 ~gr~l~V~~a~~~   90 (96)
T 2dgx_A           78 GSKKILVSLATGA   90 (96)
T ss_dssp             TTEEEEEEECCCS
T ss_pred             CCeEEEEEEcCCC
Confidence            6999999998754

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.50  E-value=3.2e-14  Score=107.56  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeec-----CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKT-----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~-----~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ..+|||++++.+  |++|+++|++||+|.+|.+....     .+++|||+|.+.++|++|++.|||..|         .|
T Consensus         4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   74 (88)
T 4a8x_A            4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---------DG   74 (88)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---------CC
Confidence            467899998854  89999999999999999886522     567899999999999999999999985         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      +.|+|+++...
T Consensus        75 ~~l~v~~a~~~   85 (88)
T 4a8x_A           75 QEITATAVLAP   85 (88)
T ss_dssp             EECEEEEECCC
T ss_pred             eEEEEEECCCC
Confidence            99999998753

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.50  E-value=3.1e-14  Score=113.21  Aligned_cols=75  Identities=19%  Similarity=0.183  Sum_probs=65.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ....|||+|++.  +|++|+++|++||.|.+|.+.+  ++++|||+|.+.++|++|++.|||..|         .|++|+
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~   77 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKF---------HHVPLY   77 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBS---------SSSBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEE---------CCeEEE
Confidence            456789999884  4899999999999999998875  456899999999999999999999985         699999


Q ss_pred             EeeccCCc
Q 019494           84 ITYSAHTD   91 (340)
Q Consensus        84 v~~s~~~~   91 (340)
                      |+|++...
T Consensus        78 V~~a~~~~   85 (111)
T 1whx_A           78 LEWAPIGV   85 (111)
T ss_dssp             EEEEETTT
T ss_pred             EEECCCCc
Confidence            99998653

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=3.9e-14  Score=111.02  Aligned_cols=76  Identities=14%  Similarity=0.032  Sum_probs=66.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+++.    ..++||||+|.+.++|++|++.|||..|         .|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   84 (105)
T 1x5u_A           14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---------YG   84 (105)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---------CC
Confidence            457889999884  48999999999999999988762    3566899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        85 ~~l~v~~a~~~   95 (105)
T 1x5u_A           85 KPIRVNKASAH   95 (105)
T ss_dssp             CBCEEEETTTT
T ss_pred             eEEEEEECCCC
Confidence            99999999865

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.50  E-value=8.4e-15  Score=111.59  Aligned_cols=74  Identities=15%  Similarity=0.293  Sum_probs=63.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|+||+.++|+++|+++|++||.|++|++..+     ++|+ |||+|.+.+ |.+|++.|||..|.|+   .|+|++|+
T Consensus         4 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~-a~~a~~~l~g~~~~g~---~l~V~~a~   78 (90)
T 2ki2_A            4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGF-GFVEMQEES-VSEAIAKLDNTDFMGR---TIRVTEAN   78 (90)
T ss_dssp             EEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEE-EEEEECTTH-HHHHHHTSCSSCCSSS---SCSEEEC-
T ss_pred             EEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceE-EEEEECCHH-HHHHHHHhCCCEECCe---EEEEEEcC
Confidence            459999999999999999999999999998753     2565 999999999 9999999999999999   99999987


Q ss_pred             CCCC
Q 019494          215 HTDL  218 (340)
Q Consensus       215 ~~~~  218 (340)
                      ....
T Consensus        79 ~~~~   82 (90)
T 2ki2_A           79 PKKS   82 (90)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7543

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=2.7e-14  Score=107.45  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=63.3

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHh-cCCCCCccCCCCCCCCceE
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~~~~~~l   82 (340)
                      +..+|||++++.+  |++|+++|++||+|.+|.+.+  ++++|||+|.+.++|.+|++.| +|..+         .|++|
T Consensus        11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~---------~g~~l   79 (85)
T 2ytc_A           11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIV---------NGRRL   79 (85)
T ss_dssp             SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEE---------TTEEC
T ss_pred             CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeE---------CCCEE
Confidence            4568899998854  899999999999999999886  4568999999999999999999 88774         69999


Q ss_pred             EEeecc
Q 019494           83 RITYSA   88 (340)
Q Consensus        83 ~v~~s~   88 (340)
                      +|+|++
T Consensus        80 ~v~~ak   85 (85)
T 2ytc_A           80 NVKWGR   85 (85)
T ss_dssp             CEEECC
T ss_pred             EEEecC
Confidence            999975

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=1.9e-14  Score=110.91  Aligned_cols=76  Identities=16%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEE-EEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKI-TTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v-~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      +..+|||++++.  +|++|+++|++||+|.+| .+++    +..++||||+|.+.++|++|++.|||..|         .
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~   74 (96)
T 1x5t_A            4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---------C   74 (96)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---------T
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence            567899999985  489999999999999999 7765    23567899999999999999999999985         6


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      |++|+|++++.+
T Consensus        75 g~~l~v~~a~~~   86 (96)
T 1x5t_A           75 NRPITVSYAFKK   86 (96)
T ss_dssp             TEECEEEESCCC
T ss_pred             CEEEEEEEeccc
Confidence            999999999865

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.50  E-value=4.1e-14  Score=111.94  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=66.1

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+.+.    ..++||||+|.+.++|.+|++.|||..|         .|
T Consensus        25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---------~g   95 (108)
T 2jrs_A           25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---------AG   95 (108)
T ss_dssp             SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            456789999884  48999999999999999988763    2456899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        96 ~~l~V~~a~~k  106 (108)
T 2jrs_A           96 RPMKVGHVTER  106 (108)
T ss_dssp             SCCEEECSCSS
T ss_pred             EEEEEEEcccC
Confidence            99999998854

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=4.5e-14  Score=110.83  Aligned_cols=76  Identities=12%  Similarity=0.122  Sum_probs=65.8

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|+.||+|.+|.+.+.    .++++|||+|.+.++|++|++.|||..|         .|
T Consensus        22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   92 (106)
T 1p27_B           22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---------MG   92 (106)
T ss_dssp             TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---------CC
Confidence            446799999984  48999999999999999988762    3467899999999999999999999984         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        93 ~~l~V~~a~~~  103 (106)
T 1p27_B           93 QPISVDWCFVR  103 (106)
T ss_dssp             SBCEEEESEES
T ss_pred             cEEEEEeecCC
Confidence            99999998754

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.49  E-value=2.2e-14  Score=111.68  Aligned_cols=72  Identities=15%  Similarity=0.272  Sum_probs=64.1

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      ..+|||++++.  +|++|+++|++||+|.+|.+.+  +++||||+|.+.++|.+|++.|||..|         .|++|+|
T Consensus        27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V   95 (101)
T 2la4_A           27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPF---------QGRNLRT   95 (101)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEE---------TTEECCC
T ss_pred             CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEE
Confidence            46789999885  4899999999999999999874  567899999999999999999999984         6999999


Q ss_pred             eeccC
Q 019494           85 TYSAH   89 (340)
Q Consensus        85 ~~s~~   89 (340)
                      +|++.
T Consensus        96 ~~a~~  100 (101)
T 2la4_A           96 GWGKE  100 (101)
T ss_dssp             CBCCC
T ss_pred             EeccC
Confidence            99875

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=3.3e-14  Score=104.82  Aligned_cols=69  Identities=14%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+|+||+.++|+++|+++|++||.|.+|.+..++     +|+ |||+|.+.++|.+|++.++ ..+.|+   .|+|++|
T Consensus         3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~~~-~~~~g~---~l~v~~a   76 (77)
T 1uaw_A            3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQSR-HELDSK---TIDPKVA   76 (77)
T ss_dssp             EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSE-EEECCCCTTHHHHHHHTTT-CCCSSC---CCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCce-EEEEEcCHHHHHHHHHhCC-CccCCE---EEEEEec
Confidence            4599999999999999999999999999987643     465 9999999999999999999 999998   9999876

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.49  E-value=6.1e-14  Score=108.76  Aligned_cols=74  Identities=15%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             ccccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            4 IWPLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         4 ~~~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+..+|||++++.   +|++|+++|++||+|.+|.+.    ++||||+|.+.++|.+|++.|||..+         .|+
T Consensus        19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~   85 (97)
T 2xnq_A           19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMN---------FGK   85 (97)
T ss_dssp             CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEE---------TTE
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence            45678899999885   499999999999999999883    46899999999999999999999884         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++++.+
T Consensus        86 ~l~V~~a~~~   95 (97)
T 2xnq_A           86 KLILEVSSSN   95 (97)
T ss_dssp             ECEEEECCCC
T ss_pred             EEEEEecCCC
Confidence            9999998754

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.49  E-value=2.4e-14  Score=111.61  Aligned_cols=78  Identities=17%  Similarity=0.114  Sum_probs=67.4

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .+..+|||.+++.  +|++|+++|++||+|.+|.+++    +..++||||+|.+.++|++|++.|||..|         .
T Consensus        10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~   80 (102)
T 2cqb_A           10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------F   80 (102)
T ss_dssp             CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---------T
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence            3567889999884  4899999999999999998865    23567899999999999999999999885         6


Q ss_pred             CceEEEeeccCCc
Q 019494           79 PCTLRITYSAHTD   91 (340)
Q Consensus        79 ~~~l~v~~s~~~~   91 (340)
                      |++|+|++++.+.
T Consensus        81 g~~l~V~~a~~~~   93 (102)
T 2cqb_A           81 GRTIRVNLAKPMR   93 (102)
T ss_dssp             TEEEEEEECCCCC
T ss_pred             CcEEEEEeCCCCC
Confidence            9999999998653

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.49  E-value=6.9e-14  Score=109.95  Aligned_cols=77  Identities=19%  Similarity=0.328  Sum_probs=66.7

Q ss_pred             CcEEEEEeecCCCCC------CHHHHHHHHcccCCeeEEEEEc---CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          135 SNVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFD---KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       135 s~vl~v~v~nl~~~v------t~~~L~~~F~~fG~v~~v~i~~---~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      +++|+  |+||+..+      |+++|+++|++||.|.+|.|.+   +++|+ |||+|.+.++|.+|++.|||..|.|+  
T Consensus        15 ~~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~-afV~f~~~~~A~~Ai~~l~g~~~~g~--   89 (105)
T 2nlw_A           15 DSVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ--   89 (105)
T ss_dssp             CSEEE--EESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCE-EEEEECSSSHHHHHHHHCSSEECSTT--
T ss_pred             CCEEE--EeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeE-EEEEECCHHHHHHHHHHhCCcccCCC--
Confidence            56666  89999999      7899999999999999999874   23576 99999999999999999999999884  


Q ss_pred             cEEEEEeecCC
Q 019494          206 CKLHISYSRHT  216 (340)
Q Consensus       206 ~~l~v~~ak~~  216 (340)
                      +.|+|++++..
T Consensus        90 ~~l~V~~a~~~  100 (105)
T 2nlw_A           90 HTFRVNLFTDF  100 (105)
T ss_dssp             CEEEEECSCCC
T ss_pred             ceEEEEEcchH
Confidence            38999998643

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.49  E-value=9.2e-14  Score=110.99  Aligned_cols=77  Identities=13%  Similarity=0.241  Sum_probs=68.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .++|+  |.||+.++|+++|+++|+.||.|++|.|...+     +|+ |||+|.+.++|.+|++. |+..|.++   .|+
T Consensus        27 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~   99 (116)
T 1x4b_A           27 FRKLF--IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF-GFVTFSSMAEVDAAMAA-RPHSIDGR---VVE   99 (116)
T ss_dssp             HTEEE--EECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSE-EEEECSSHHHHHHHHTS-CSEEETTE---EEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCce-EEEEeCCHHHHHHHHHh-CCcEECCE---EEE
Confidence            45666  89999999999999999999999999987642     465 99999999999999998 99999998   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |.+++.+..
T Consensus       100 V~~a~~~~~  108 (116)
T 1x4b_A          100 PKRAVAREE  108 (116)
T ss_dssp             EECCSSCCC
T ss_pred             EEECCCCcc
Confidence            999887653

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.8e-14  Score=109.05  Aligned_cols=74  Identities=18%  Similarity=0.262  Sum_probs=64.2

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      ..+|||++++.  +|++|+++|++||.|. +.++....++||||+|.+.++|++|++.|||..|         .|++|+|
T Consensus        19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V   88 (97)
T 2e5j_A           19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL---------GTDTLRV   88 (97)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCS---------SSSCCEE
T ss_pred             CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEE
Confidence            56889999884  4899999999999996 5555556677999999999999999999999985         6999999


Q ss_pred             eeccCC
Q 019494           85 TYSAHT   90 (340)
Q Consensus        85 ~~s~~~   90 (340)
                      ++++.+
T Consensus        89 ~~a~~~   94 (97)
T 2e5j_A           89 ALARQQ   94 (97)
T ss_dssp             EECCCC
T ss_pred             EEcCCC
Confidence            998864

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.49  E-value=2.7e-14  Score=114.39  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.+  |+||+++|++||+|.+|.+++.    ..++||||+|.+.++|++|++.|||..|         .|
T Consensus        39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g  109 (118)
T 2khc_A           39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---------GT  109 (118)
T ss_dssp             CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---------TT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            3567899998854  8999999999999999998752    3467899999999999999999999885         69


Q ss_pred             ceEEEeecc
Q 019494           80 CTLRITYSA   88 (340)
Q Consensus        80 ~~l~v~~s~   88 (340)
                      ++|+|+|++
T Consensus       110 ~~l~V~~ak  118 (118)
T 2khc_A          110 KRLKVQLKK  118 (118)
T ss_dssp             EECCEEEC-
T ss_pred             EEEEEEecC
Confidence            999999975

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.48  E-value=5.5e-14  Score=112.07  Aligned_cols=76  Identities=13%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|+.||.|.+|.+++.    ..++||||+|.+.++|++|++.|||..|         .|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   84 (115)
T 2dgo_A           14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---------GG   84 (115)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---------TT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            456789999884  48999999999999999988763    2356899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      +.|+|.|++.+
T Consensus        85 ~~l~V~~a~~~   95 (115)
T 2dgo_A           85 RQIRTNWATRK   95 (115)
T ss_dssp             EECEEEESSCC
T ss_pred             EEEEEEEccCC
Confidence            99999999865

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.48  E-value=7.5e-14  Score=109.65  Aligned_cols=76  Identities=20%  Similarity=0.183  Sum_probs=66.2

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHh-cCCCCCccCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENM   77 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~~   77 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+++.     ..++||||+|.+.++|++|++.| ||..|         
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---------   84 (107)
T 2cph_A           14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---------   84 (107)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---------
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---------
Confidence            457889999885  48999999999999999988753     24678999999999999999999 89884         


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .|++|+|++++.+
T Consensus        85 ~g~~l~v~~a~~~   97 (107)
T 2cph_A           85 YGRRLVLEWADSE   97 (107)
T ss_dssp             SSCBCEEEECCCC
T ss_pred             CCCEEEEEeCCCC
Confidence            6999999999865

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.48  E-value=8.1e-14  Score=111.69  Aligned_cols=78  Identities=12%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      .+..+|||++++.  +|++|+++|++||+|.+|.+.+.   ..++||||+|.+.++|++|++.|||..|         .|
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---------~g   75 (116)
T 2fy1_A            5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL---------HG   75 (116)
T ss_dssp             CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC---------SS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            3457899999984  48999999999999999988862   3557899999999999999999999984         69


Q ss_pred             ceEEEeeccCCc
Q 019494           80 CTLRITYSAHTD   91 (340)
Q Consensus        80 ~~l~v~~s~~~~   91 (340)
                      ++|+|++++...
T Consensus        76 ~~l~V~~a~~~~   87 (116)
T 2fy1_A           76 KAIKVEQAKKPS   87 (116)
T ss_dssp             SBCEEEECCCSS
T ss_pred             EEEEEEECCCCC
Confidence            999999998653

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.48  E-value=2.4e-14  Score=109.25  Aligned_cols=73  Identities=16%  Similarity=0.127  Sum_probs=60.0

Q ss_pred             cccCCCCCC--CHHHHHHhhcccC--ceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFG--FVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG--~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      .|||++++.  +|++|+++|++||  +|.+|.++..    .+++||||+|.+.++|++|++.|||..|         .|+
T Consensus         3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---------~gr   73 (90)
T 3p5t_L            3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---------HGQ   73 (90)
T ss_dssp             -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---------SSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---------CCE
Confidence            478888874  4899999999999  9999988762    3567899999999999999999999984         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|.+++..
T Consensus        74 ~i~V~~~~~~   83 (90)
T 3p5t_L           74 NPVVTPSNKL   83 (90)
T ss_dssp             CCEECCC---
T ss_pred             EEEEEECCCC
Confidence            9999998754

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.48  E-value=5.2e-14  Score=110.47  Aligned_cols=79  Identities=13%  Similarity=0.154  Sum_probs=66.9

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+++    +..++||||+|.+.++|++|++.|||..+..      ..+
T Consensus        12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~------~~g   85 (106)
T 2dgp_A           12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP------GMN   85 (106)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT------TCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC------CCC
Confidence            456789999985  4899999999999999998876    2356789999999999999999999987520      268


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        86 ~~l~v~~a~~~   96 (106)
T 2dgp_A           86 RPIQVKPADSE   96 (106)
T ss_dssp             SCCEEEECCCC
T ss_pred             ceEEEEECCcc
Confidence            99999998865

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.48  E-value=5.9e-14  Score=110.34  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      .+..+|||.+++.  +|++|+++|+.||+|.+|.++..   ..+++|||+|.+.++|++|++.|||..|         .|
T Consensus        27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   97 (107)
T 3ulh_A           27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL---------DG   97 (107)
T ss_dssp             CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence            4567899999985  48999999999999999988762   3456899999999999999999999985         69


Q ss_pred             ceEEEeecc
Q 019494           80 CTLRITYSA   88 (340)
Q Consensus        80 ~~l~v~~s~   88 (340)
                      +.|+|++++
T Consensus        98 ~~l~V~~a~  106 (107)
T 3ulh_A           98 RPMNIQLVT  106 (107)
T ss_dssp             EECEEEEEC
T ss_pred             cEEEEEEeC
Confidence            999999975

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.48  E-value=1.3e-13  Score=108.63  Aligned_cols=79  Identities=16%  Similarity=0.199  Sum_probs=67.2

Q ss_pred             CCCcEEEEEeecCCC-----CCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCeeC
Q 019494          133 PESNVLLASIENMQY-----AVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIY  201 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~-----~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i~  201 (340)
                      .++++|+  +.||..     +-++++|+++|++||+|++|+|...      .+|+ |||+|.+.++|.+|++.|||..+.
T Consensus         6 ~~s~~l~--l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~-~FV~f~~~~~A~~Ai~~lnG~~~~   82 (105)
T 2pe8_A            6 CPTKVVL--LRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVR-IFLEFERVESAIKAVVDLNGRYFG   82 (105)
T ss_dssp             SCCSEEE--EESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEE-EEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCEEE--EEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEE-EEEEECCHHHHHHHHHHHCCCEEC
Confidence            4588888  778852     2378999999999999999998753      3576 999999999999999999999999


Q ss_pred             CCCccEEEEEeecCCC
Q 019494          202 DGGFCKLHISYSRHTD  217 (340)
Q Consensus       202 ~~~~~~l~v~~ak~~~  217 (340)
                      |+   .|+|.|++...
T Consensus        83 Gr---~i~v~~a~~~~   95 (105)
T 2pe8_A           83 GR---VVKACFYNLDK   95 (105)
T ss_dssp             TE---ECEEEECCHHH
T ss_pred             Cc---EEEEEEcCHHH
Confidence            99   99999997644

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.48  E-value=9.1e-14  Score=108.69  Aligned_cols=75  Identities=15%  Similarity=0.323  Sum_probs=66.1

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..+..+|||.+++.  +|++|+++|++||+|.+|.+++    +||||+|.+.++|++|++.|||..|         .+++
T Consensus         8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~   74 (103)
T 2dgu_A            8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDL---------EGEN   74 (103)
T ss_dssp             CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEE---------TTEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCcc---------CCCE
Confidence            45678899999984  4899999999999999998864    3799999999999999999999984         6999


Q ss_pred             EEEeeccCCc
Q 019494           82 LRITYSAHTD   91 (340)
Q Consensus        82 l~v~~s~~~~   91 (340)
                      |+|++++.+.
T Consensus        75 l~v~~a~~~~   84 (103)
T 2dgu_A           75 IEIVFAKPPD   84 (103)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEcCCCc
Confidence            9999998653

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.48  E-value=3.7e-14  Score=110.55  Aligned_cols=75  Identities=11%  Similarity=-0.003  Sum_probs=65.2

Q ss_pred             cccccCCCCCC------C--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCC
Q 019494            7 LSRKYLQWQLS------A--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP   74 (340)
Q Consensus         7 ~~~~~l~~~~~------~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~   74 (340)
                      .+.|||++++.      +  |++|+++|++||+|.+|.++.    +.+++||||+|.+.++|.+|++.|||..|      
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~------   79 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL------   79 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS------
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc------
Confidence            45689999988      5  899999999999999998875    23567899999999999999999999985      


Q ss_pred             CCCCC-ceEEEeeccCC
Q 019494           75 ENMGP-CTLRITYSAHT   90 (340)
Q Consensus        75 ~~~~~-~~l~v~~s~~~   90 (340)
                         .| ++|+|++++..
T Consensus        80 ---~g~r~l~V~~a~~~   93 (100)
T 3ns6_A           80 ---DLKHRLFLYTMKDV   93 (100)
T ss_dssp             ---SSSCBCEEEESHHH
T ss_pred             ---CCCeEEEEEECchh
Confidence               57 99999998743

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.48  E-value=3.6e-14  Score=112.75  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             cccccccCCCCCCC--HHHHH---HhhcccCceeEEEEeee-------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccC
Q 019494            5 WPLSRKYLQWQLSA--SGERA---HVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYL   72 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~---~lF~~fG~V~~v~~~~~-------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~   72 (340)
                      .+..+|||++++.+  |+||+   ++|++||+|.+|.+.+.       ..++||||+|.+.++|++|++.|||..|    
T Consensus        13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~----   88 (111)
T 2cpi_A           13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV----   88 (111)
T ss_dssp             CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE----
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE----
Confidence            35568899888743  79999   99999999999998762       2336899999999999999999999985    


Q ss_pred             CCCCCCCceEEEeeccCCc
Q 019494           73 LPENMGPCTLRITYSAHTD   91 (340)
Q Consensus        73 ~~~~~~~~~l~v~~s~~~~   91 (340)
                           .|++|+|++++.+.
T Consensus        89 -----~gr~l~V~~a~~k~  102 (111)
T 2cpi_A           89 -----DGRTLKASLGTTKY  102 (111)
T ss_dssp             -----TTEEEEEESCCCCS
T ss_pred             -----CCEEEEEEeccccc
Confidence                 69999999998663

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=7.4e-14  Score=111.04  Aligned_cols=77  Identities=16%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      .+..+|||.+++.  +|++|+++|++||+|.+|.+++.   ..++||||+|.+.++|++|++.|||..|         .|
T Consensus        13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   83 (114)
T 2do0_A           13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL---------FD   83 (114)
T ss_dssp             CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence            4567899999985  48999999999999999988763   2356899999999999999999999985         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++..
T Consensus        84 ~~l~v~~a~~~   94 (114)
T 2do0_A           84 RPMHVKMDERA   94 (114)
T ss_dssp             EECEEEECSCC
T ss_pred             CEEEEEEcccC
Confidence            99999998754

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=3.2e-13  Score=102.95  Aligned_cols=75  Identities=7%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ..+|+  |+||+.++|+++|+++|+.| .|.+|+|..+.    +|+ |||+|.+.++|.+|++ |||..|.|+   .|+|
T Consensus        10 ~~~l~--v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~g~~~~gr---~i~v   81 (91)
T 2dgw_A           10 CHTVK--LRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGY-IFVDFSNEEEVKQALK-CNREYMGGR---YIEV   81 (91)
T ss_dssp             CCEEE--EECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEE-EEEECSSHHHHHHHHH-SCSEEETTE---EEEE
T ss_pred             ccEEE--EECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceE-EEEEECCHHHHHHHHH-hCCceeCCc---EEEE
Confidence            55666  89999999999999999999 99999987643    355 9999999999999999 999999999   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      .+++.+.
T Consensus        82 ~~a~~~~   88 (91)
T 2dgw_A           82 FREKSGP   88 (91)
T ss_dssp             EEESSCC
T ss_pred             EECCcCC
Confidence            9987653

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.48  E-value=8.9e-14  Score=109.82  Aligned_cols=73  Identities=14%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC----
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP----   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~----   79 (340)
                      ...+|||.+++.+  |+||+++|++||+|.+|.+++.   +||||+|.+.++|++||+.|||..|         .+    
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~~~   81 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEGE   81 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEE---------ECTTSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCc---------cCCcCc
Confidence            4568899998844  8999999999999999998764   5899999999999999999999985         46    


Q ss_pred             -ceEEEeeccCC
Q 019494           80 -CTLRITYSAHT   90 (340)
Q Consensus        80 -~~l~v~~s~~~   90 (340)
                       ++|+|++++.+
T Consensus        82 ~~~i~V~~a~~~   93 (108)
T 1x4c_A           82 TAYIRVKVDGPR   93 (108)
T ss_dssp             EEEEEEEESSCC
T ss_pred             ceEEEEEeCCCC
Confidence             99999999865

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=6.2e-14  Score=107.29  Aligned_cols=73  Identities=16%  Similarity=0.133  Sum_probs=64.8

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+..+|||++++.  +|++|+++|++||+|.+|.+.+    .+|||+|.+.++|++|++.|||..|         .|++|
T Consensus         8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l   74 (92)
T 2dgt_A            8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEF---------QGKRM   74 (92)
T ss_dssp             CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCee---------CCcEE
Confidence            3567899999884  4899999999999999999874    3899999999999999999999985         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        75 ~V~~a~~~   82 (92)
T 2dgt_A           75 HVQLSTSR   82 (92)
T ss_dssp             EEEESSCC
T ss_pred             EEEEccCC
Confidence            99999865

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=5.1e-14  Score=110.05  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|+.||+|.+|.+++.    .++++|||+|.+.++|++|++.|||..|         .|
T Consensus         7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   77 (104)
T 1p1t_A            7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF---------SG   77 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---------SS
T ss_pred             CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence            456889999885  48999999999999999988763    2367899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      +.|+|++++.+
T Consensus        78 ~~l~v~~a~~~   88 (104)
T 1p1t_A           78 RALRVDNAASE   88 (104)
T ss_dssp             SCBEEEETTCT
T ss_pred             cEEEEEeCCCc
Confidence            99999999865

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=8.2e-14  Score=107.59  Aligned_cols=74  Identities=18%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             ccccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            4 IWPLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         4 ~~~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+..+|||++++.   +|++|+++|++||+|.+|.+.    ++||||+|.+.++|++|++.|||..+         .|+
T Consensus         7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~   73 (96)
T 2kvi_A            7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMN---------FGK   73 (96)
T ss_dssp             --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSC---------BTT
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCee---------CCc
Confidence            45778999999885   499999999999999999884    35899999999999999999999984         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++++.+
T Consensus        74 ~l~V~~a~~~   83 (96)
T 2kvi_A           74 KLILEVSSSN   83 (96)
T ss_dssp             TBCEEEEECC
T ss_pred             EEEEEEcCcC
Confidence            9999999754

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.47  E-value=4.4e-14  Score=109.01  Aligned_cols=78  Identities=23%  Similarity=0.285  Sum_probs=67.2

Q ss_pred             ccccccccCCCCCCC--HHHHH----HhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494            4 IWPLSRKYLQWQLSA--SGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN   76 (340)
Q Consensus         4 ~~~~~~~~l~~~~~~--ee~L~----~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~   76 (340)
                      ..+..+|||++++.+  |++|+    ++|++||.|.+|.+.+ +..+++|||+|.+.++|.+|++.|||..|        
T Consensus         5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--------   76 (97)
T 1nu4_A            5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--------   76 (97)
T ss_dssp             -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE--------
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--------
Confidence            356788999999854  88999    9999999999998875 23456899999999999999999999885        


Q ss_pred             CCCceEEEeeccCC
Q 019494           77 MGPCTLRITYSAHT   90 (340)
Q Consensus        77 ~~~~~l~v~~s~~~   90 (340)
                       .|++|+|+|++.+
T Consensus        77 -~g~~l~v~~a~~~   89 (97)
T 1nu4_A           77 -YDKPMRIQYAKTD   89 (97)
T ss_dssp             -TTEECEEEECSSC
T ss_pred             -CCcEEEEEEccCC
Confidence             6999999999865

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=2.9e-14  Score=113.74  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             cccccccC--CCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCC-CccCCCCCCCC
Q 019494            5 WPLSRKYL--QWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI-PRYLLPENMGP   79 (340)
Q Consensus         5 ~~~~~~~l--~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i-~~~~~~~~~~~   79 (340)
                      .|...|||  ++++  ++|++|+++|++||+|.+|.+..  +++||||+|.+.++|++|++.|||+.+ .     ....+
T Consensus        23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~-----~lg~g   95 (114)
T 2cq2_A           23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVD-----DLGQK   95 (114)
T ss_dssp             SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEEC-----TTSCE
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEcc-----ccCCC
Confidence            35667899  6675  45899999999999999998765  456899999999999999999999975 1     00258


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|.|++..
T Consensus        96 ~~l~v~~a~~~  106 (114)
T 2cq2_A           96 ITLYLNFVEKV  106 (114)
T ss_dssp             EECEEEEESCC
T ss_pred             cEEEEEecccC
Confidence            89999998743

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.47  E-value=8.6e-14  Score=110.13  Aligned_cols=72  Identities=22%  Similarity=0.363  Sum_probs=64.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+.    ++||||+|.+.++|++|++.|||..|         .|++|+
T Consensus        30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~   96 (108)
T 2jvo_A           30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSF---------ANQPLE   96 (108)
T ss_dssp             SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEE
Confidence            456889999984  489999999999999999887    46899999999999999999999985         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |+|++.+
T Consensus        97 V~~a~~~  103 (108)
T 2jvo_A           97 VVYSKLP  103 (108)
T ss_dssp             EESCSCC
T ss_pred             EEEecCC
Confidence            9998864

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=4e-14  Score=109.74  Aligned_cols=77  Identities=13%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCcee-EEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVH-KITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~-~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      .+..+|||++++.+  |++|+++|++||+|. +|.+++.    ..++||||+|.+.++|++|++.|||..+         
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------   77 (99)
T 2div_A            7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL---------   77 (99)
T ss_dssp             SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---------
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---------
Confidence            35678999999854  999999999999999 9988762    3457899999999999999999999885         


Q ss_pred             CCce----EEEeeccCC
Q 019494           78 GPCT----LRITYSAHT   90 (340)
Q Consensus        78 ~~~~----l~v~~s~~~   90 (340)
                      .|+.    |+|+|++..
T Consensus        78 ~g~~~~~~l~v~~a~~~   94 (99)
T 2div_A           78 PGATPAKRFKLNYATYS   94 (99)
T ss_dssp             SSCSSCEECCEEETTCC
T ss_pred             CCCCcceeEEEeecCCC
Confidence            5777    999998855

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=3.1e-13  Score=105.49  Aligned_cols=77  Identities=17%  Similarity=0.270  Sum_probs=66.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+..+|+++|+++|+.||.|++|+|..++     +|+ |||+|.+.++|.+|++  ++..|.|+   .|
T Consensus        14 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~--~~~~~~g~---~l   85 (103)
T 2cqg_A           14 KTSDLI--VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGF-GFVRFTEYETQVKVMS--QRHMIDGR---WC   85 (103)
T ss_dssp             CCCCEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHH--SCEEETTE---EE
T ss_pred             CCCEEE--EEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccce-EEEEECCHHHHHHHHH--cCCeeCCe---EE
Confidence            356666  89999999999999999999999999987643     355 9999999999999998  57789998   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.|++.+..
T Consensus        86 ~v~~a~~~~~   95 (103)
T 2cqg_A           86 DCKLPNSKQS   95 (103)
T ss_dssp             EEECCCTTCC
T ss_pred             EEEecCCCCc
Confidence            9999887643

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=6.9e-14  Score=110.54  Aligned_cols=74  Identities=22%  Similarity=0.283  Sum_probs=65.9

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+++.  ++||||+|.+.++|.+|++.|||..|         .|++|+
T Consensus        24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~   92 (109)
T 1x4g_A           24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTI---------EGHVVK   92 (109)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEE
Confidence            456899999984  48999999999999999998863  57899999999999999999999884         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |.|++.+
T Consensus        93 v~~a~~~   99 (109)
T 1x4g_A           93 CYWGKES   99 (109)
T ss_dssp             EECCCCC
T ss_pred             EEecCCC
Confidence            9999865

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.47  E-value=9.6e-14  Score=109.77  Aligned_cols=77  Identities=14%  Similarity=0.126  Sum_probs=66.9

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhc------CCCCCccC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALD------GRSIPRYL   72 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~ln------g~~i~~~~   72 (340)
                      .+..+|||++++.  +|++|+++|++||+|.+|.+++.    ..++||||+|.+.++|.+|++.||      |..     
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~-----   87 (111)
T 1x4h_A           13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK-----   87 (111)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE-----
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE-----
Confidence            4567899999884  48999999999999999988752    356789999999999999999999      877     


Q ss_pred             CCCCCCCceEEEeeccCC
Q 019494           73 LPENMGPCTLRITYSAHT   90 (340)
Q Consensus        73 ~~~~~~~~~l~v~~s~~~   90 (340)
                          +.|++|+|++++.+
T Consensus        88 ----~~g~~l~v~~a~~~  101 (111)
T 1x4h_A           88 ----LDGRQLKVDLAVTR  101 (111)
T ss_dssp             ----SSSCEEEEECCCCC
T ss_pred             ----EcCEEEEEEECCCC
Confidence                46999999998865

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.46  E-value=8.2e-14  Score=110.16  Aligned_cols=76  Identities=20%  Similarity=0.181  Sum_probs=65.9

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|+.||+|.+|.+.+.    ..+++|||+|.+.++|.+|++.|||..|         .|
T Consensus        25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g   95 (110)
T 1oo0_B           25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------MG   95 (110)
T ss_dssp             TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            456789999984  48999999999999999988752    3467899999999999999999999984         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        96 ~~l~V~~a~~~  106 (110)
T 1oo0_B           96 QTIQVDWCFVK  106 (110)
T ss_dssp             EECEEEESEES
T ss_pred             cEEEEEEcccC
Confidence            99999998754

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.46  E-value=9.9e-14  Score=114.32  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=66.3

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.+  |+||+++|+.||+|.+|.+++.    .+++||||+|.+.++|.+|++.|||..|         .|
T Consensus        41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g  111 (139)
T 1u6f_A           41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---------LN  111 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            3567999998854  8999999999999999988763    2467899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus       112 ~~l~v~~a~~~  122 (139)
T 1u6f_A          112 KRLKVALAASG  122 (139)
T ss_dssp             CEEEEEESSCC
T ss_pred             eEEEEEECCCC
Confidence            99999999865

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=2.9e-14  Score=107.37  Aligned_cols=75  Identities=12%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .+..+|||++++.+  |++|+++|++||+|.+|.+...    ..++||||+|.+.++|++|++.|||..|         .
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~   73 (85)
T 1x4e_A            3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---------Q   73 (85)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---------C
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---------e
Confidence            35678999999854  8999999999999999988762    3467899999999999999999999984         6


Q ss_pred             CceEEEeecc
Q 019494           79 PCTLRITYSA   88 (340)
Q Consensus        79 ~~~l~v~~s~   88 (340)
                      |+.|++++++
T Consensus        74 g~~~~~~~~~   83 (85)
T 1x4e_A           74 AQMAKQSGPS   83 (85)
T ss_dssp             EESCCSSCCC
T ss_pred             eEEEeecCCC
Confidence            8888777654

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.46  E-value=1.3e-13  Score=111.48  Aligned_cols=78  Identities=15%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      .+..+|||++++.  +|++|+++|++||+|.+|.+.+.   ..+++|||+|.+.++|++|++.|||..|         .|
T Consensus        33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g  103 (124)
T 2kt5_A           33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---------DG  103 (124)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES---------SS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            4567899999984  48999999999999999988763   3567899999999999999999999884         69


Q ss_pred             ceEEEeeccCCc
Q 019494           80 CTLRITYSAHTD   91 (340)
Q Consensus        80 ~~l~v~~s~~~~   91 (340)
                      ++|+|+++....
T Consensus       104 ~~l~V~~a~~~~  115 (124)
T 2kt5_A          104 RPMDIQLVASQI  115 (124)
T ss_dssp             CEEEEEEECCTT
T ss_pred             cEEEEEEeCCCC
Confidence            999999998653

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=9.3e-14  Score=105.86  Aligned_cols=72  Identities=17%  Similarity=0.180  Sum_probs=64.0

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+.+    ++|||+|.+.++|++|++.|||..|         .|++|+
T Consensus         8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~   74 (90)
T 2dnp_A            8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEV---------KGKRIN   74 (90)
T ss_dssp             CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEE
Confidence            457889999884  4899999999999999999874    3799999999999999999999884         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |++++..
T Consensus        75 v~~a~~~   81 (90)
T 2dnp_A           75 VELSTKG   81 (90)
T ss_dssp             EEESCCC
T ss_pred             EEECCCC
Confidence            9999865

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.46  E-value=2.4e-13  Score=121.52  Aligned_cols=81  Identities=28%  Similarity=0.467  Sum_probs=73.8

Q ss_pred             CCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          133 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      +++++|+  |+||+. ++|+++|+++|+.||.|++|+|..+++|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.
T Consensus        32 ~~~~~l~--V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~v~  105 (229)
T 2adc_A           32 AGNSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRIT  105 (229)
T ss_dssp             CCCSEEE--EESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCC-EEEEESCHHHHHHHHHHHTTCBCSSS---BCEEE
T ss_pred             CCCCEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEE
Confidence            4577877  889999 99999999999999999999998877786 99999999999999999999999998   99999


Q ss_pred             eecCCCCc
Q 019494          212 YSRHTDLS  219 (340)
Q Consensus       212 ~ak~~~~~  219 (340)
                      |++.....
T Consensus       106 ~a~~~~~~  113 (229)
T 2adc_A          106 LSKHQNVQ  113 (229)
T ss_dssp             CCSCCCCC
T ss_pred             EecCcccc
Confidence            99876543

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.46  E-value=5.1e-14  Score=103.45  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=59.4

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +|||++++.+  |++|+++|++||+|.+|.+.+.    .++++|||+|.+.++|++|++ |||..|         .|++|
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---------~g~~l   70 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---------NNKMV   70 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---------SSCCC
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---------CCEEE
Confidence            5788888744  8999999999999999988752    346789999999999999997 999884         69999


Q ss_pred             EEeec
Q 019494           83 RITYS   87 (340)
Q Consensus        83 ~v~~s   87 (340)
                      +|+++
T Consensus        71 ~v~~A   75 (75)
T 2mss_A           71 ECKKA   75 (75)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99875

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.45  E-value=2.4e-13  Score=106.59  Aligned_cols=77  Identities=14%  Similarity=0.212  Sum_probs=66.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeE-EEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQK-IAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~-v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ..+|+  |+||++++|+++|+++|+.||.|.+ |+|..+    .+|+ |||+|.+.++|.+|++. |+..|.++   .|+
T Consensus        15 ~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~-afV~F~~~~~a~~A~~~-~~~~~~gr---~i~   87 (104)
T 1wg5_A           15 DGFVR--LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE-AFVQFASQEIAEKALKK-HKERIGHR---YIE   87 (104)
T ss_dssp             CCEEE--EESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSE-EEEEESSHHHHHHHHTT-TTCCSSSS---CCE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CcchhCCc---EEE
Confidence            55666  8999999999999999999999988 776532    2576 99999999999999998 99999999   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |.++.....
T Consensus        88 v~~~~~~~~   96 (104)
T 1wg5_A           88 IFKSSRAEV   96 (104)
T ss_dssp             EEEECTTTS
T ss_pred             EEECCHHHH
Confidence            998876554

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.45  E-value=1.2e-13  Score=104.72  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.  +|++|+++|+.||+|.+|.+...    .++++|||+|.+.++|++|+ .|||..|         .|+
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---------~g~   75 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---------RGR   75 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---------TTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---------CCc
Confidence            46789999885  48999999999999999988752    34678999999999999999 9999985         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|+|++++.+
T Consensus        76 ~l~V~~a~~~   85 (89)
T 3ucg_A           76 QIKVIPKRTN   85 (89)
T ss_dssp             ECEEEETTTT
T ss_pred             EEEEEEccCC
Confidence            9999998754

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.45  E-value=4.9e-12  Score=116.02  Aligned_cols=80  Identities=25%  Similarity=0.456  Sum_probs=70.7

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494          133 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC  206 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~  206 (340)
                      .++++|+  |+||+.++|+++|+    ++|++||.|++|++.+  +.+|+ |||+|.+.++|.+|++.|||..|.|+   
T Consensus         7 ~~~~~l~--V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---   80 (282)
T 3pgw_A            7 RPNHTIY--INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK---   80 (282)
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceE-EEEEECCHHHHHHHHHHhcCCeeCCc---
Confidence            3477777  89999999999966    8999999999999875  33565 99999999999999999999999998   


Q ss_pred             EEEEEeecCCCC
Q 019494          207 KLHISYSRHTDL  218 (340)
Q Consensus       207 ~l~v~~ak~~~~  218 (340)
                      .|+|.|++....
T Consensus        81 ~l~v~~a~~~~~   92 (282)
T 3pgw_A           81 PMRIQYAKTDSD   92 (282)
T ss_pred             EEEEEEeccCcc
Confidence            999999987654

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.45  E-value=8.3e-14  Score=105.68  Aligned_cols=74  Identities=22%  Similarity=0.244  Sum_probs=62.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCee--CCCCccEEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--YDGGFCKLHIS  211 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i--~~~~~~~l~v~  211 (340)
                      +++.|+  |+||+.++|+++|+++|++||.|++|+|..+++|+ |||+|++.++|.+|    ++..+  .+.   .|+|.
T Consensus         4 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~~----~~~~~~~~g~---~l~v~   73 (88)
T 1wf0_A            4 GSSGVF--VGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAF-AFVTFADDQIAQSL----CGEDLIIKGI---SVHIS   73 (88)
T ss_dssp             CCCEEE--EESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSC-CEEECSCHHHHHHT----TTCEEEETTE---EEEEE
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCE-EEEEECCHHHHHHH----hcCCceeCCE---EEEEE
Confidence            356666  89999999999999999999999999998777786 99999999999754    55544  565   99999


Q ss_pred             eecCCC
Q 019494          212 YSRHTD  217 (340)
Q Consensus       212 ~ak~~~  217 (340)
                      +++++.
T Consensus        74 ~a~~~~   79 (88)
T 1wf0_A           74 NAEPKH   79 (88)
T ss_dssp             CCCCCC
T ss_pred             ecCCCC
Confidence            987654

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.45  E-value=1.4e-13  Score=109.80  Aligned_cols=79  Identities=11%  Similarity=0.135  Sum_probs=68.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCe-eEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v-~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      +..+|+  |+||++++|+++|+++|+.||.| ..|+|+.+    .+|+ |||+|.+.++|.+|++. |+..|.++   .|
T Consensus        14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~~-~~~~~~gr---~i   86 (114)
T 2cpy_A           14 AKVCAH--ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQ-ALVQFKNEDDARKSERL-HRKKLNGR---EA   86 (114)
T ss_dssp             CCCEEE--EESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSC-EEEECSSHHHHHHHGGG-CSEEETTE---EE
T ss_pred             CccEEE--EeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CCCccCCe---EE
Confidence            356666  89999999999999999999999 78888643    3566 99999999999999987 99999998   99


Q ss_pred             EEEeecCCCCc
Q 019494          209 HISYSRHTDLS  219 (340)
Q Consensus       209 ~v~~ak~~~~~  219 (340)
                      +|.+++.+...
T Consensus        87 ~v~~a~~~~~~   97 (114)
T 2cpy_A           87 FVHVVTLEDMR   97 (114)
T ss_dssp             EEEEECHHHHH
T ss_pred             EEEECCHHHHH
Confidence            99999876543

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.44  E-value=4.8e-14  Score=108.33  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=62.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.  +|+||+++|++||.|.++.++.    +..+++|||+|.+.++|++|++.|||..|         .|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g   84 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------GS   84 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---------CC
Confidence            346889999884  4899999999999998776654    23457899999999999999999999985         69


Q ss_pred             ceEEEeeccC
Q 019494           80 CTLRITYSAH   89 (340)
Q Consensus        80 ~~l~v~~s~~   89 (340)
                      ++|+|++++.
T Consensus        85 r~l~v~~a~s   94 (95)
T 2ek1_A           85 RKVKLSGPSS   94 (95)
T ss_dssp             EECEEECCC-
T ss_pred             cEEEEEeccC
Confidence            9999998763

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.44  E-value=2.6e-14  Score=108.85  Aligned_cols=74  Identities=22%  Similarity=0.256  Sum_probs=62.5

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +.+|||++++.+  |++|+++|++||+|.+|.+.+    +.++++|||+|.+.+ |.+|++.|||..+         .|+
T Consensus         1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---------~g~   70 (90)
T 2ki2_A            1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---------MGR   70 (90)
T ss_dssp             CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---------SSS
T ss_pred             CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---------CCe
Confidence            467899888744  899999999999999998876    235778999999999 9999999999984         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++|...
T Consensus        71 ~l~V~~a~~~   80 (90)
T 2ki2_A           71 TIRVTEANPK   80 (90)
T ss_dssp             SCSEEEC---
T ss_pred             EEEEEEcCCC
Confidence            9999998865

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.44  E-value=2.2e-13  Score=109.46  Aligned_cols=76  Identities=11%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ..+|+  |+||++++|+++|+++|+.||.   |+.|+|..++    +|+ |||+|.+.++|.+|++ |||..|.++   .
T Consensus        17 ~~~l~--V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr---~   89 (118)
T 2db1_A           17 GYVVK--LRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGE-AFVELESEDDVKLALK-KDRESMGHR---Y   89 (118)
T ss_dssp             CCEEE--EESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEE-EEEEBSSHHHHHHHGG-GTTEEETTE---E
T ss_pred             CcEEE--EeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCeECCe---E
Confidence            55666  8999999999999999999999   8999987543    355 9999999999999999 999999998   9


Q ss_pred             EEEEeecCCC
Q 019494          208 LHISYSRHTD  217 (340)
Q Consensus       208 l~v~~ak~~~  217 (340)
                      |+|.+++.++
T Consensus        90 i~V~~a~~~~   99 (118)
T 2db1_A           90 IEVFKSHRTE   99 (118)
T ss_dssp             EEEEEECHHH
T ss_pred             EEEEECCHHH
Confidence            9999997665

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.44  E-value=1.1e-13  Score=110.21  Aligned_cols=76  Identities=18%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCce----eEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFV----HKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V----~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|+.||.|    ..+.+..+..++||||+|.+.++|++|++.|||..|         .|
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g   94 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL---------YG   94 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence            457899999984  489999999999999    566555556677999999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|+|++.+
T Consensus        95 ~~l~v~~a~~~  105 (115)
T 2cpx_A           95 KILVIEFGKNK  105 (115)
T ss_dssp             CBCEEEECCCC
T ss_pred             cEEEEEEccCC
Confidence            99999999865

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.44  E-value=2.4e-13  Score=117.15  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=70.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++++|+  |.||+..+|+++|+++|+.||.|++|.|...    .+|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus        87 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~-afV~F~~~~~A~~Ai~~lng~~l~Gr---~l~  160 (177)
T 2f3j_A           87 TGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PMD  160 (177)
T ss_dssp             TCEEEE--EECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCC-EEEEESCHHHHHHHHHHSTTCBCSSS---BCE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeE-EEEEeCCHHHHHHHHHHhCCCEECCE---EEE
Confidence            456666  8999999999999999999999999998753    3465 99999999999999999999999998   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |.|+.....
T Consensus       161 V~~a~~~~~  169 (177)
T 2f3j_A          161 IQLVASQID  169 (177)
T ss_dssp             EEEESSGGG
T ss_pred             EEEecCCCC
Confidence            999987543

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=108.17  Aligned_cols=77  Identities=13%  Similarity=0.117  Sum_probs=66.7

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcc-cCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCC-CCccCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSA-FGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRS-IPRYLLPENM   77 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~-fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~-i~~~~~~~~~   77 (340)
                      .+..+|||++++.  +|++|+++|++ ||+|.+|.+++.   .+++||||+|.+.++|.+|++.|||.. |         
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---------   77 (104)
T 2dhg_A            7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL---------   77 (104)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---------
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc---------
Confidence            3567899999885  48999999999 999999988762   346789999999999999999999988 5         


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .|++|+|++++.+
T Consensus        78 ~g~~l~v~~a~~~   90 (104)
T 2dhg_A           78 GSKPVRLSVAIPK   90 (104)
T ss_dssp             SSSCCCCCBCCCC
T ss_pred             CCEeEEEEEccCC
Confidence            5999999998755

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.44  E-value=1.2e-13  Score=103.14  Aligned_cols=65  Identities=22%  Similarity=0.372  Sum_probs=57.2

Q ss_pred             cEEEEEeecCCCCC------CHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          136 NVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       136 ~vl~v~v~nl~~~v------t~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      ++|+  |+|||..+      |+++|+++|++||.|.+|+|.+.   ++|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus         2 ~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~   75 (81)
T 2krb_A            2 SVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ   75 (81)
T ss_dssp             CEEE--EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCE-EEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred             CEEE--EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEE-EEEEECCHHHHHHHHHHhcCcccCCc
Confidence            3455  89999999      77999999999999999998742   3575 99999999999999999999999875

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.8e-13  Score=105.40  Aligned_cols=76  Identities=14%  Similarity=0.189  Sum_probs=64.3

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEE-EeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKIT-TFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~-~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ..+|||++++.  +|++|+++|++||+|.+|+ ++.....+.|||+|.+.++|.+|++.|||..|         .|++|+
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~   85 (96)
T 2e44_A           15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL---------ENFTLK   85 (96)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC---------SSCBCE
T ss_pred             CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEE
Confidence            46789988884  4899999999999999994 66543334599999999999999999999984         699999


Q ss_pred             EeeccCCc
Q 019494           84 ITYSAHTD   91 (340)
Q Consensus        84 v~~s~~~~   91 (340)
                      |++++.++
T Consensus        86 V~~a~~~~   93 (96)
T 2e44_A           86 VAYIPDEM   93 (96)
T ss_dssp             EEECCCCC
T ss_pred             EEEcCccc
Confidence            99998663

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3.4e-13  Score=105.04  Aligned_cols=75  Identities=19%  Similarity=0.312  Sum_probs=63.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |.||+..+|+++|+++|+.|+.   |+++..+     +|+ |||+|.+.++|.+|++.|||..|.++   .|
T Consensus        14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l   84 (102)
T 2fc8_A           14 PSKTLF--VKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGF-GFVDFNSEEDAKAAKEAMEDGEIDGN---KV   84 (102)
T ss_dssp             CCSSEE--EECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---EC
T ss_pred             CCCEEE--EeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCeECCe---EE
Confidence            466677  8999999999999999998854   4443321     355 99999999999999999999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|.|++++.
T Consensus        85 ~V~~a~~~~   93 (102)
T 2fc8_A           85 TLDWAKPKG   93 (102)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEecCCC
Confidence            999998755

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.7e-13  Score=103.55  Aligned_cols=66  Identities=15%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             ccCCCCCCC--HHH----HHHhhccc-CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494           10 KYLQWQLSA--SGE----RAHVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus        10 ~~l~~~~~~--ee~----L~~lF~~f-G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +||.|++-+  +++    |+++|++| |+|.+|.      ++||||+|.+.|+|++|++.|||..+         .||+|
T Consensus        12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l---------~gr~i   76 (96)
T 2diu_A           12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDV---------FGNRI   76 (96)
T ss_dssp             EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCS---------SSSCC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCcc---------CCceE
Confidence            788888854  565    66899999 5999992      36899999999999999999999996         49999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|+|++.+
T Consensus        77 ~v~~A~~~   84 (96)
T 2diu_A           77 IVSFTPKN   84 (96)
T ss_dssp             EEESSCCS
T ss_pred             EEEecCCC
Confidence            99999865

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.44  E-value=1.5e-13  Score=111.29  Aligned_cols=76  Identities=12%  Similarity=0.115  Sum_probs=65.9

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +...|||.+++.  +|++|+++|+.||+|.+|.++.    +..+++|||+|.+.++|++|++.|||..|         .|
T Consensus        21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   91 (126)
T 3ex7_B           21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---------MG   91 (126)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence            456799999985  4899999999999999998875    23466899999999999999999999985         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      +.|+|+|++.+
T Consensus        92 ~~l~v~~a~~~  102 (126)
T 3ex7_B           92 QPISVDWCFVR  102 (126)
T ss_dssp             SBCEEEESEES
T ss_pred             eEEEEEEecCC
Confidence            99999999754

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.44  E-value=1.2e-13  Score=109.22  Aligned_cols=71  Identities=24%  Similarity=0.269  Sum_probs=62.9

Q ss_pred             cccccCCCCC---CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQL---SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ..+|||++++   ++|+||+++|++||+|.+|.+    .++||||+|.+.++|++|++.|||..|         .|++|+
T Consensus        27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~   93 (110)
T 1wf1_A           27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVL---------AGQTLD   93 (110)
T ss_dssp             SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEE---------TTEECC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEE
Confidence            3688999887   458999999999999999988    346899999999999999999999884         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |++++..
T Consensus        94 V~~a~~~  100 (110)
T 1wf1_A           94 INMAGEP  100 (110)
T ss_dssp             EEESCCC
T ss_pred             EEECCCC
Confidence            9998754

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.44  E-value=1.2e-13  Score=109.74  Aligned_cols=76  Identities=22%  Similarity=0.277  Sum_probs=65.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCcee--------EEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCcc
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVH--------KITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRY   71 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~--------~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~   71 (340)
                      +..+|||.+++.  +|++|+++|++||.|.        +|.++.    +..++||||+|.+.++|++|++.|||..|   
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---   90 (113)
T 2cpe_A           14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF---   90 (113)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE---
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc---
Confidence            457899999984  4899999999999998        587765    23467899999999999999999999985   


Q ss_pred             CCCCCCCCceEEEeeccCC
Q 019494           72 LLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        72 ~~~~~~~~~~l~v~~s~~~   90 (340)
                            .|++|+|++++.+
T Consensus        91 ------~g~~l~V~~a~~~  103 (113)
T 2cpe_A           91 ------QGSKLKVSLARKK  103 (113)
T ss_dssp             ------TTEECEEECSSCC
T ss_pred             ------CCCEEEEEECCCC
Confidence                  6999999998865

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.43  E-value=5.7e-14  Score=104.94  Aligned_cols=69  Identities=17%  Similarity=0.163  Sum_probs=58.1

Q ss_pred             ccccCCCCCCC--------HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            8 SRKYLQWQLSA--------SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         8 ~~~~l~~~~~~--------ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ++|||++++.+        |++|+++|++||+|.+|.+.+  +.+++||||+|.+.++|.+|++.|||..|         
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---------   72 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---------   72 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---------
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc---------
Confidence            56888888743        489999999999999998875  24567899999999999999999999985         


Q ss_pred             CCc-eEEEe
Q 019494           78 GPC-TLRIT   85 (340)
Q Consensus        78 ~~~-~l~v~   85 (340)
                      .|+ +|+|+
T Consensus        73 ~g~~~l~V~   81 (81)
T 2krb_A           73 DKQHTFRVN   81 (81)
T ss_dssp             SSSSCCCCC
T ss_pred             CCceeEEeC
Confidence            577 77663

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=2.9e-13  Score=105.93  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=63.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ..+|+  |.||++++|+++|+++|+.||. ++|+|..++    +|+ |||+|++.++|.+|++ +|+..|.++   .|+|
T Consensus        15 ~~~l~--V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~i~V   86 (102)
T 1wez_A           15 GHCVH--MRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHR---YVEL   86 (102)
T ss_dssp             SCEEE--EESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEE-EEEECSSSHHHHHHHT-TSSCCSSSS---CCEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEEE
Confidence            55666  8999999999999999999994 588887543    355 9999999999999995 799999999   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      ..+....
T Consensus        87 ~~~~~~~   93 (102)
T 1wez_A           87 FLNSTAG   93 (102)
T ss_dssp             EEECCCC
T ss_pred             EECCCCC
Confidence            8876543

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.43  E-value=3.7e-13  Score=111.51  Aligned_cols=79  Identities=16%  Similarity=0.325  Sum_probs=67.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      ++++|+  |+||+..+|+++|+++|+.||.|..        |++..  +.+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus        44 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~  120 (143)
T 3egn_A           44 PNCRIY--VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQ-AFIGLPNEKAAAKALKEANGYVLFGK  120 (143)
T ss_dssp             CCSEEE--EEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEE-EEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccE-EEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence            466766  8999999999999999999999876        33332  34565 99999999999999999999999998


Q ss_pred             CccEEEEEeecCCCC
Q 019494          204 GFCKLHISYSRHTDL  218 (340)
Q Consensus       204 ~~~~l~v~~ak~~~~  218 (340)
                         .|+|.|++....
T Consensus       121 ---~l~V~~a~~~~~  132 (143)
T 3egn_A          121 ---PMVVQFARSARP  132 (143)
T ss_dssp             ---ECEEEECCCSCC
T ss_pred             ---EEEEEECCCCCC
Confidence               999999987643

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=8.5e-14  Score=106.68  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=62.8

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCc-eeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC-CCCCccCCCCCCCCc
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDG-RSIPRYLLPENMGPC   80 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~-V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng-~~i~~~~~~~~~~~~   80 (340)
                      .+..+|||++++.+  |++|+++|++||+ |..+.+.   +++||||+|.+.++|++|++.||| ..|         .|+
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~---------~g~   73 (93)
T 2cqh_A            6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVEL---------HGK   73 (93)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEE---------TTE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeE---------CCE
Confidence            35678999999854  8999999999999 6666553   346899999999999999999999 774         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++++.+
T Consensus        74 ~l~v~~a~~~   83 (93)
T 2cqh_A           74 IMEVDYSVSK   83 (93)
T ss_dssp             ECEEEECCCC
T ss_pred             EEEEEEccCc
Confidence            9999999865

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.43  E-value=7.9e-14  Score=107.83  Aligned_cols=76  Identities=16%  Similarity=0.176  Sum_probs=64.0

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...+|||.+++.+  |+||+++|++||.|.+++++.    +..+++|||+|.+.++|++|++.|||..|         .|
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g   84 (98)
T 2cqp_A           14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------GS   84 (98)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---------TT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence            4567999998844  899999999999998765554    23467899999999999999999999984         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++..
T Consensus        85 ~~l~V~~a~~~   95 (98)
T 2cqp_A           85 RKVKLVLGSGP   95 (98)
T ss_dssp             EECEEEESSCS
T ss_pred             eEEEEEEcCCC
Confidence            99999998743

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.43  E-value=6.8e-14  Score=108.89  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=64.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE----cCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~----~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +..|+  |+||+.++|+++|+++|+.||.|..+.+.    .+++|+ |||+|.+.++|.+|++ |||..|.++   .|+|
T Consensus        17 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~-afV~f~~~~~a~~A~~-l~g~~~~g~---~l~V   89 (101)
T 1fj7_A           17 PFNLF--IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKF-GYVDFESAEDLEKALE-LTGLKVFGN---EIKL   89 (101)
T ss_dssp             SEEEE--EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTE-EEEEESSHHHHHHHHH-GGGCCBTTB---CCEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcE-EEEEECCHHHHHHHHh-cCCcEECCc---EEEE
Confidence            45555  99999999999999999999988772221    234676 9999999999999999 999999998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      .+++.+.
T Consensus        90 ~~a~~~~   96 (101)
T 1fj7_A           90 EKPKGRD   96 (101)
T ss_dssp             ECCSCCC
T ss_pred             EEcCCCC
Confidence            9987654

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=5e-13  Score=106.26  Aligned_cols=79  Identities=23%  Similarity=0.373  Sum_probs=66.5

Q ss_pred             CCCcEEEEEeecCCCCCC-----------HHHHHHHHcccCCeeEEEEEcC-CCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494          133 PESNVLLASIENMQYAVT-----------LDVLHMVFSAFGPVQKIAMFDK-NGGLQALIQYPDVQTAVVAKEALEGHCI  200 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt-----------~~~L~~~F~~fG~v~~v~i~~~-~~g~~afV~F~~~~~A~~A~~~lng~~i  200 (340)
                      .++++|+  |.||....+           +++|+++|++||.|++|.|..+ .+|+ |||+|.+.++|.+|++.|||..|
T Consensus        13 ~~s~~l~--l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~   89 (112)
T 2dit_A           13 RHERVVI--IKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGV-ASVSFRDPEEADYCIQTLDGRWF   89 (112)
T ss_dssp             CSCCEEE--EESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCE-EEEECSCHHHHHHHHHHSTTCEE
T ss_pred             CCceEEE--EEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEE-EEEEECCHHHHHHHHHHcCCCEE
Confidence            3578877  789843332           5899999999999999987643 3676 99999999999999999999999


Q ss_pred             CCCCccEEEEEeecCCC
Q 019494          201 YDGGFCKLHISYSRHTD  217 (340)
Q Consensus       201 ~~~~~~~l~v~~ak~~~  217 (340)
                      .++   .|+|.|+++..
T Consensus        90 ~gr---~l~v~~a~~~~  103 (112)
T 2dit_A           90 GGR---QITAQAWDGTT  103 (112)
T ss_dssp             TTE---ECEEEECCSCC
T ss_pred             CCc---EEEEEEeCCCC
Confidence            998   99999987754

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.43  E-value=8.4e-14  Score=102.19  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+|+||+.++|+++|+++|++||.|.+|.+..+     ++|+ |||+|.+.++|.+|++. ++..|.|+   .|+|.+|
T Consensus         2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~v~~a   75 (75)
T 1iqt_A            2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF-CFITFKEEEPVKKIMEK-KYHNVGLS---KCEIKVA   75 (75)
T ss_dssp             EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCC-EEEECSSSHHHHHHHTT-SSCCBTTB---CCCEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCE-EEEEECCHHHHHHHHHh-CCCeECCE---EEEEEEC
Confidence            459999999999999999999999999988643     2565 99999999999999985 89999998   8888764

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.43  E-value=2.2e-13  Score=114.62  Aligned_cols=77  Identities=18%  Similarity=0.129  Sum_probs=67.1

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .+...|||.+++.  +|++|+++|++||+|.+|.+++.    ..++||||+|.+.++|++||+.|||..|         .
T Consensus        37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~  107 (156)
T 1h2v_Z           37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL---------D  107 (156)
T ss_dssp             TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---------T
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence            4567899999984  48999999999999999988762    2456899999999999999999999885         6


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      +++|+|++++..
T Consensus       108 g~~l~V~~a~~~  119 (156)
T 1h2v_Z          108 DRIIRTDWDAGF  119 (156)
T ss_dssp             TEECEEEEESCC
T ss_pred             CeEEEEEECCCC
Confidence            999999999854

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=2.1e-13  Score=107.00  Aligned_cols=74  Identities=16%  Similarity=0.115  Sum_probs=63.8

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ....|||++++.  +|++|+++|++||+|.+|.+.+   +.+++||||+|.+.++|.+|++ ++|..         +.|+
T Consensus        10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~---------~~gr   79 (103)
T 1s79_A           10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQK---------YKET   79 (103)
T ss_dssp             GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCC---------CTTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCE---------ECCE
Confidence            346789999884  4899999999999999999886   3456789999999999999998 89987         4699


Q ss_pred             eEEEeeccC
Q 019494           81 TLRITYSAH   89 (340)
Q Consensus        81 ~l~v~~s~~   89 (340)
                      .|+|.+++.
T Consensus        80 ~l~V~~~~~   88 (103)
T 1s79_A           80 DLLILFKDD   88 (103)
T ss_dssp             TCEEEEHHH
T ss_pred             EEEEEEchH
Confidence            999998763

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.43  E-value=1.8e-13  Score=114.29  Aligned_cols=75  Identities=23%  Similarity=0.310  Sum_probs=66.0

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|++.+. +++||||+|.+.++|.+|++.|||..|         .|++|+
T Consensus        72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~  141 (150)
T 2i2y_A           72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTL---------CGCRVR  141 (150)
T ss_dssp             TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCS---------SSSCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEE
Confidence            457889998884  37999999999999999998875 466899999999999999999999884         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |++++.+
T Consensus       142 v~~a~~~  148 (150)
T 2i2y_A          142 VELSNGE  148 (150)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCC
Confidence            9998754

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.6e-13  Score=105.96  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             cccccCCCCC---------CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            7 LSRKYLQWQL---------SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         7 ~~~~~l~~~~---------~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ..|+.|.|.+         ++|++|+++|++||+|.+|.+++ .+++||||+|.+.++|++|++.+++.           
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~~-----------   77 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVGL-----------   77 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCBC-----------
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCCC-----------
Confidence            4577777766         35899999999999999999885 45668999999999999999986652           


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .+++|+|+|++.+
T Consensus        78 ~g~~l~V~~a~~~   90 (100)
T 2d9o_A           78 VDNPLKISWLEGQ   90 (100)
T ss_dssp             SSSBCEEECSSCC
T ss_pred             CCCeEEEEEccCC
Confidence            4899999998754

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=1.4e-13  Score=109.91  Aligned_cols=75  Identities=9%  Similarity=0.111  Sum_probs=64.9

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+++.    ..++||||+|.+.++|++|++.|++ .         +.+
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~---------~~g   85 (116)
T 2cqd_A           16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I---------IDG   85 (116)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E---------ETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-c---------CCC
Confidence            457899999885  48999999999999999998762    3567899999999999999999998 5         469


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++..
T Consensus        86 ~~l~V~~a~~~   96 (116)
T 2cqd_A           86 RKANVNLAYLG   96 (116)
T ss_dssp             EECEEEESTTT
T ss_pred             EEEEEEEcccC
Confidence            99999998754

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.43  E-value=3.7e-13  Score=117.02  Aligned_cols=79  Identities=29%  Similarity=0.481  Sum_probs=72.0

Q ss_pred             CcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          135 SNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       135 s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +++|+  |+||+. .+|+++|+++|+.||.|.+|++..+++|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|+
T Consensus         3 ~~~l~--v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~l~v~~a   76 (198)
T 1qm9_A            3 NSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLS   76 (198)
T ss_dssp             CCEEE--EECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSC-CEEECTTTHHHHHHHHHHTTCCCSSC---CCEEEEC
T ss_pred             CcEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCE-EEEEECCHHHHHHHHHHhCCCeecCe---EEEEEEe
Confidence            45666  899999 99999999999999999999998877786 99999999999999999999999998   9999999


Q ss_pred             cCCCCc
Q 019494          214 RHTDLS  219 (340)
Q Consensus       214 k~~~~~  219 (340)
                      +.....
T Consensus        77 ~~~~~~   82 (198)
T 1qm9_A           77 KHQNVQ   82 (198)
T ss_dssp             CCCSCC
T ss_pred             cCCCcC
Confidence            876543

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=3.6e-13  Score=107.12  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +..+|||.+++.  +|++|+++|+.||+|.+|.+++.   ..++||||+|.+.++|++|++.|||..|....+ ....++
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~-~~~~~~  102 (114)
T 1x5o_A           24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG-VSAPTE  102 (114)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT-SCCCSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc-ccCCCC
Confidence            456889999885  48999999999999999988763   345789999999999999999999998631100 001478


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|.|++..
T Consensus       103 ~l~v~~a~p~  112 (114)
T 1x5o_A          103 PLLCKFSGPS  112 (114)
T ss_dssp             CBEEEECCCS
T ss_pred             ceeEEccCCC
Confidence            8999998743

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.42  E-value=1.2e-13  Score=101.86  Aligned_cols=70  Identities=11%  Similarity=0.103  Sum_probs=59.9

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ++|||++++.+  |++|+++|++||+|.+|.+.+.    .++++|||+|.+.++|++|++.++ ..         +.|++
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~---------~~g~~   70 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HE---------LDSKT   70 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CC---------CSSCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Cc---------cCCEE
Confidence            46888888743  7999999999999999988762    346789999999999999999998 66         47999


Q ss_pred             EEEeec
Q 019494           82 LRITYS   87 (340)
Q Consensus        82 l~v~~s   87 (340)
                      |+|+++
T Consensus        71 l~v~~a   76 (77)
T 1uaw_A           71 IDPKVA   76 (77)
T ss_dssp             CEEEEC
T ss_pred             EEEEec
Confidence            999876

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.42  E-value=1.2e-13  Score=107.43  Aligned_cols=75  Identities=15%  Similarity=0.180  Sum_probs=62.8

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      .+..+|||++++.+  |++|+++|+.|| |.+|.+++.     ..++||||+|.+.++|.+|+ .|||..|         
T Consensus        17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---------   85 (100)
T 2j76_E           17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---------   85 (100)
T ss_dssp             ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---------
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---------
Confidence            35678899998843  899999999999 999988753     24678999999999999999 8999984         


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .|+.|+|++++.+
T Consensus        86 ~g~~l~V~~a~~~   98 (100)
T 2j76_E           86 GNRRIRVDVADQA   98 (100)
T ss_dssp             TTBCCCCEECCCS
T ss_pred             CCeEEEEEeccCC
Confidence            6999999998754

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.42  E-value=3e-13  Score=104.85  Aligned_cols=73  Identities=21%  Similarity=0.305  Sum_probs=64.3

Q ss_pred             cccccccCCCCCC--CHHHHHHhhccc--CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAF--GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~f--G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      .+..+|||++++.  +|++|+++|++|  |+|.+|.+.    ++||||+|.+.++|++|++.|||..|         .|+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~   79 (99)
T 2cpd_A           13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVL---------DGS   79 (99)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEE---------TTE
T ss_pred             CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEe---------CCc
Confidence            4567899999984  489999999999  999999765    35899999999999999999999985         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++++.+
T Consensus        80 ~l~v~~a~~~   89 (99)
T 2cpd_A           80 PIEVTLAKPV   89 (99)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEECCCC
Confidence            9999999865

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.42  E-value=1.7e-13  Score=107.67  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             cccccCCCCCCC--------HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494            7 LSRKYLQWQLSA--------SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN   76 (340)
Q Consensus         7 ~~~~~l~~~~~~--------ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~   76 (340)
                      .++|||++++.+        |++|+++|++||+|.+|.+.+  +.+++||||+|.+.++|.+|++.|||..|        
T Consensus        15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--------   86 (105)
T 2nlw_A           15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--------   86 (105)
T ss_dssp             CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--------
T ss_pred             CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--------
Confidence            467899888843        488999999999999998875  24567899999999999999999999885        


Q ss_pred             CCCc-eEEEeeccCC
Q 019494           77 MGPC-TLRITYSAHT   90 (340)
Q Consensus        77 ~~~~-~l~v~~s~~~   90 (340)
                       .|+ +|+|+++...
T Consensus        87 -~g~~~l~V~~a~~~  100 (105)
T 2nlw_A           87 -DKQHTFRVNLFTDF  100 (105)
T ss_dssp             -STTCEEEEECSCCC
T ss_pred             -CCCceEEEEEcchH
Confidence             688 9999998743

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.42  E-value=2.7e-13  Score=111.76  Aligned_cols=77  Identities=9%  Similarity=0.167  Sum_probs=67.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ..+|+  |+||++++|+++|+++|+.||.   |++|+|..++    +|+ |||+|++.++|.+|++ |||..|.++   .
T Consensus        44 ~~~lf--VgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~-aFV~F~~~e~a~~Al~-~~g~~l~gr---~  116 (136)
T 2hgl_A           44 GFVVK--LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGE-AFVELGSEDDVKMALK-KDRESMGHR---Y  116 (136)
T ss_dssp             TCEEE--EESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEE-EEEECSSHHHHHHHHT-TTEEESSSS---E
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCEECCE---E
Confidence            55666  8999999999999999999999   8889887543    455 9999999999999999 999999999   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|.+++..+.
T Consensus       117 i~V~~a~~~e~  127 (136)
T 2hgl_A          117 IEVFKSHRTEM  127 (136)
T ss_dssp             EEEEECCHHHH
T ss_pred             EEEEECChHHH
Confidence            99999876543

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.41  E-value=4.5e-13  Score=105.51  Aligned_cols=74  Identities=20%  Similarity=0.260  Sum_probs=62.0

Q ss_pred             ccccCCCCCC-------CHHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCC
Q 019494            8 SRKYLQWQLS-------ASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE   75 (340)
Q Consensus         8 ~~~~l~~~~~-------~ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~   75 (340)
                      .-|+|.|..+       .|+||+++|++||+|.+|.+.+.     .++++|||+|.+.++|.+|++.|||+.+       
T Consensus         9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~-------   81 (105)
T 2pe8_A            9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF-------   81 (105)
T ss_dssp             SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE-------
T ss_pred             CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE-------
Confidence            3445655542       38999999999999999988762     3477899999999999999999999985       


Q ss_pred             CCCCceEEEeeccCC
Q 019494           76 NMGPCTLRITYSAHT   90 (340)
Q Consensus        76 ~~~~~~l~v~~s~~~   90 (340)
                        .|++|+|+|+...
T Consensus        82 --~Gr~i~v~~a~~~   94 (105)
T 2pe8_A           82 --GGRVVKACFYNLD   94 (105)
T ss_dssp             --TTEECEEEECCHH
T ss_pred             --CCcEEEEEEcCHH
Confidence              6999999998754

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.41  E-value=2.1e-13  Score=115.09  Aligned_cols=75  Identities=12%  Similarity=0.087  Sum_probs=65.7

Q ss_pred             ccccCCCCCC--CHHHHHHhhcccC--ceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            8 SRKYLQWQLS--ASGERAHVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         8 ~~~~l~~~~~--~ee~L~~lF~~fG--~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      .+|||++++.  +|++|+++|+.||  +|.+|.++.    +.+++||||+|.+.++|++||+.|||..|         .|
T Consensus        56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---------~G  126 (156)
T 3n9u_C           56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL---------NG  126 (156)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---------TT
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            5789999984  4899999999999  999998875    23567899999999999999999999985         69


Q ss_pred             ceEEEeeccCCc
Q 019494           80 CTLRITYSAHTD   91 (340)
Q Consensus        80 ~~l~v~~s~~~~   91 (340)
                      +.|+|++++.+.
T Consensus       127 r~l~V~~a~~~~  138 (156)
T 3n9u_C          127 EKVDVRPATRQN  138 (156)
T ss_dssp             EECEEEECCHHH
T ss_pred             eEeEEEEcCCCc
Confidence            999999997553

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.8e-13  Score=107.30  Aligned_cols=75  Identities=9%  Similarity=0.097  Sum_probs=64.8

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.  +|++|+++|++||+|.+|.+++.    ..++||||+|.+.++|++|++. |+..|         .|
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---------~g   84 (105)
T 2dh8_A           15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---------DG   84 (105)
T ss_dssp             SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---------TT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---------CC
Confidence            456899999884  48999999999999999988763    3456899999999999999998 98874         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        85 ~~l~V~~a~~~   95 (105)
T 2dh8_A           85 RNIDPKPCTPR   95 (105)
T ss_dssp             EEEBCCCSCCS
T ss_pred             EEEEEEEccCC
Confidence            99999998865

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.41  E-value=3e-13  Score=102.72  Aligned_cols=75  Identities=12%  Similarity=-0.004  Sum_probs=65.0

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +...+|||++++.  +|+||+++|++| +|.+|.+.  .++++|||+|.+.++|++|++.|||..+         .|++|
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l   70 (88)
T 1wg1_A            3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSF---------RGKDL   70 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeE---------CCcEE
Confidence            3456889999884  489999999999 99999885  3566899999999999999999999984         69999


Q ss_pred             EEeeccCCc
Q 019494           83 RITYSAHTD   91 (340)
Q Consensus        83 ~v~~s~~~~   91 (340)
                      +|+++..+.
T Consensus        71 ~V~~a~~~~   79 (88)
T 1wg1_A           71 IVQLQPTDA   79 (88)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEcCCCc
Confidence            999998654

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=2e-13  Score=108.67  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=64.2

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.  +|++|+++|+.||+|.+|.++.    +..++||||+|.+.++|++|+ .|||..|         .|+
T Consensus        25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~   94 (114)
T 2cq4_A           25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---------LGV   94 (114)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---------TTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---------CCe
Confidence            35789999885  4899999999999999999875    235678999999999999999 9999884         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|+|++++.+
T Consensus        95 ~l~V~~a~~~  104 (114)
T 2cq4_A           95 PIIVQASQAE  104 (114)
T ss_dssp             EEEEEEHHHH
T ss_pred             EEEEEecCCC
Confidence            9999998754

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.41  E-value=3.8e-13  Score=120.95  Aligned_cols=78  Identities=17%  Similarity=0.333  Sum_probs=67.9

Q ss_pred             CCCcEEEEEeecCCCCC---------CHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCee---
Q 019494          133 PESNVLLASIENMQYAV---------TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI---  200 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~v---------t~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i---  200 (340)
                      ..+++|+  |+||+..+         ++++|+++|++||+|++|+|+..+ |+ |||+|.++++|..|+++|||..|   
T Consensus       132 ~~~rtLf--VgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G~-AFV~F~~~~~Ae~A~~am~g~~l~~~  207 (240)
T 3u1l_A          132 KKNKTLY--VGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-NC-GFVKFKYQANAEFAKEAMSNQTLLLP  207 (240)
T ss_dssp             CCCCEEE--EECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred             cCCceee--cCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-CE-EEEEeCCHHHHHHHHHHhCCCEEecc
Confidence            3467777  89999988         799999999999999999998754 65 99999999999999999999999   


Q ss_pred             ---------CCCCccEEEEEeecCCC
Q 019494          201 ---------YDGGFCKLHISYSRHTD  217 (340)
Q Consensus       201 ---------~~~~~~~l~v~~ak~~~  217 (340)
                               .|+   .|+|.||+...
T Consensus       208 ~~~e~~~~~~gr---~L~V~wA~~~p  230 (240)
T 3u1l_A          208 SDKEWDDRREGT---GLLVKWANEDP  230 (240)
T ss_dssp             TSTTGGGGGGSC---CCEEEECC---
T ss_pred             ccccccccCCCC---EEEEEEccCCC
Confidence                     677   99999998653

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=1e-13  Score=112.16  Aligned_cols=76  Identities=5%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-EEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ..+|+  |+||++++|+++|+++|+.||.|..++ +..+    .+|+ |||+|.+.++|.+|++ |||..|.++   .|+
T Consensus        25 ~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr---~i~   97 (124)
T 1wel_A           25 GFCVY--LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE-GFVEFRNEADYKAALC-RHKQYMGNR---FIQ   97 (124)
T ss_dssp             CCEEE--EECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEE-EEEEBSSSHHHHHHHT-SCSBCSTTS---CBE
T ss_pred             CcEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEE
Confidence            45666  899999999999999999999998743 4322    2465 9999999999999999 999999999   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.+++.+.
T Consensus        98 V~~a~~~~  105 (124)
T 1wel_A           98 VHPITKKG  105 (124)
T ss_dssp             EEEECHHH
T ss_pred             EEECCHHH
Confidence            99997765

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.41  E-value=1.6e-13  Score=112.92  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.+  |++|+++|++||+|.+|.+++    +..++||||+|.+.++|++|++.|||..|         .|
T Consensus        46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---------~g  116 (135)
T 2lea_A           46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---------DG  116 (135)
T ss_dssp             GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            4567999999854  899999999999999998875    23567899999999999999999999985         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus       117 ~~l~V~~a~~~  127 (135)
T 2lea_A          117 RELRVQMARYG  127 (135)
T ss_dssp             SCCEEEECCCC
T ss_pred             EEEEEEECCCC
Confidence            99999999865

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.41  E-value=3.1e-13  Score=105.57  Aligned_cols=74  Identities=16%  Similarity=0.281  Sum_probs=63.8

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|+.|| |.+|.+++.    ..++||||+|.+.++|++|+ .|||..|         .|
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g   82 (103)
T 2dng_A           14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---------GD   82 (103)
T ss_dssp             SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---------TT
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---------CC
Confidence            456889999884  4899999999997 999988762    24668999999999999999 8999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        83 ~~l~V~~a~~~   93 (103)
T 2dng_A           83 RSLRVDIAEGR   93 (103)
T ss_dssp             EECEEEECCCC
T ss_pred             eEEEEEEecCC
Confidence            99999998865

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=3e-13  Score=105.88  Aligned_cols=74  Identities=15%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      +..+|||.+++.  +|++|+++|+.|| |.+|.+++.     ..++||||+|.+.++|++|+ .|||..|         .
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~   82 (104)
T 1wi8_A           14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---------G   82 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---------T
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---------C
Confidence            456889999884  4899999999999 999988752     23668999999999999999 9999884         6


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      |+.|+|++++.+
T Consensus        83 g~~l~V~~a~~~   94 (104)
T 1wi8_A           83 NKRIRVDVADQA   94 (104)
T ss_dssp             TEECEEEECCCC
T ss_pred             CcEEEEEEccCC
Confidence            999999999865

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.41  E-value=6.1e-13  Score=112.03  Aligned_cols=77  Identities=21%  Similarity=0.381  Sum_probs=68.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+|||.++|+++|+++|+.||.|.+|++...+     +|+ |||+|.+.++|.+|++.|||..+.++   .|+
T Consensus         3 ~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~---~l~   76 (168)
T 1b7f_A            3 NTNLI--VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGY-AFVDFTSEMDSQRAIKVLNGITVRNK---RLK   76 (168)
T ss_dssp             CSEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             ccEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceE-EEEEECCHHHHHHHHHhcCCCEeCCc---EEE
Confidence            56666  89999999999999999999999999986542     365 99999999999999999999999998   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.|+++..
T Consensus        77 v~~~~~~~   84 (168)
T 1b7f_A           77 VSYARPGG   84 (168)
T ss_dssp             EEECCCCS
T ss_pred             EEecCCCc
Confidence            99998654

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.40  E-value=8.9e-13  Score=110.66  Aligned_cols=77  Identities=18%  Similarity=0.378  Sum_probs=68.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|.+|++..++     +|+ |||+|.+.++|.+|++.|||..+.++   .|+
T Consensus         2 ~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~---~l~   75 (167)
T 1fxl_A            2 KTNLI--VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY-GFVNYIDPKDAEKAINTLNGLRLQTK---TIK   75 (167)
T ss_dssp             CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             cceEE--EcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeE-EEEEECCHHHHHHHHHHcCCCccCCc---eEE
Confidence            45666  89999999999999999999999999987654     254 99999999999999999999999998   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.++++..
T Consensus        76 v~~~~~~~   83 (167)
T 1fxl_A           76 VSYARPSS   83 (167)
T ss_dssp             EEECCCCC
T ss_pred             EEecCCCc
Confidence            99998654

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.11  E-value=2.2e-14  Score=114.75  Aligned_cols=78  Identities=17%  Similarity=0.376  Sum_probs=68.1

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCI  200 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i  200 (340)
                      ++++|+  |+||+..+|+++|+++|++||.|..        |+|...     .+|+ |||+|.+.++|.+|++.|||..|
T Consensus         6 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~   82 (116)
T 2lcw_A            6 DNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEF   82 (116)
Confidence            355666  8999999999999999999999998        777643     2465 99999999999999999999999


Q ss_pred             CCCCccEEEEEeecCCC
Q 019494          201 YDGGFCKLHISYSRHTD  217 (340)
Q Consensus       201 ~~~~~~~l~v~~ak~~~  217 (340)
                      .++   .|+|+|++.+.
T Consensus        83 ~g~---~l~V~~a~~~~   96 (116)
T 2lcw_A           83 SGN---PIKVSFATRRA   96 (116)
Confidence            998   99999987654

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.40  E-value=2.5e-13  Score=107.03  Aligned_cols=76  Identities=11%  Similarity=0.073  Sum_probs=64.8

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCc-eeEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhc--CCCCCccCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPE   75 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~-V~~v~~~~-----~~~~~~AFVeF~~~e~A~~Ai~~ln--g~~i~~~~~~~   75 (340)
                      +..+|||++++.  +|++|+++|+.||+ |.+|.+++     +.+++||||+|.+.++|.+|++.||  +..        
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~--------   78 (109)
T 2dis_A            7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ--------   78 (109)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC--------
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce--------
Confidence            456899999984  48999999999999 99998872     2456789999999999999999996  465        


Q ss_pred             CCCCceEEEeeccCC
Q 019494           76 NMGPCTLRITYSAHT   90 (340)
Q Consensus        76 ~~~~~~l~v~~s~~~   90 (340)
                       +.|++|+|+|++.+
T Consensus        79 -~~g~~l~V~~a~~~   92 (109)
T 2dis_A           79 -LWGHQIAVDWAEPE   92 (109)
T ss_dssp             -BTTBCCEEEESCSS
T ss_pred             -ecCCeEEEEEcCCC
Confidence             46999999999865

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.6e-13  Score=104.27  Aligned_cols=74  Identities=19%  Similarity=0.217  Sum_probs=61.8

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ...+|||++++.  +|++|+++|++||+|.+|.+.+...+ ||||+|.+.++|++|++ |||..|         .|+.|+
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~---------~g~~l~   75 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSL---------GGHRLR   75 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEE---------TTEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEE---------CCEEEE
Confidence            456899999884  48999999999999999843333333 89999999999999999 999885         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |+++..+
T Consensus        76 V~~a~~~   82 (94)
T 2e5g_A           76 VRPREQK   82 (94)
T ss_dssp             CBCSCCS
T ss_pred             EEECCcC
Confidence            9987654

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.40  E-value=2.5e-13  Score=111.69  Aligned_cols=73  Identities=18%  Similarity=0.148  Sum_probs=63.5

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|++||+|.+|.+.+    +..++||||+|.+.++|++|++.|||..|         .|
T Consensus        62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g  132 (140)
T 2ku7_A           62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------FG  132 (140)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---------TT
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            456889999984  4899999999999999998875    23567899999999999999999999884         69


Q ss_pred             ceEEEeec
Q 019494           80 CTLRITYS   87 (340)
Q Consensus        80 ~~l~v~~s   87 (340)
                      ++|+|++|
T Consensus       133 ~~l~v~~A  140 (140)
T 2ku7_A          133 RTIRVNLA  140 (140)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEEeC
Confidence            99999985

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.40  E-value=5.2e-13  Score=100.72  Aligned_cols=69  Identities=22%  Similarity=0.421  Sum_probs=62.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHccc----C-------CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~f----G-------~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      +++|+  |+||+.++|+++|+++|++|    |       .|.++.+...+ |+ |||+|.+.++|.+|+ .|||..|.|+
T Consensus         6 ~~~l~--V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-g~-afV~f~~~~~a~~A~-~l~g~~~~g~   80 (87)
T 2hzc_A            6 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NF-AFLEFRSVDETTQAM-AFDGIIFQGQ   80 (87)
T ss_dssp             GGEEE--EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-SE-EEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-cE-EEEEcCCHHHHHHHH-hcCCCEECCe
Confidence            56666  89999999999999999999    8       99999988664 65 999999999999999 9999999998


Q ss_pred             CccEEEEE
Q 019494          204 GFCKLHIS  211 (340)
Q Consensus       204 ~~~~l~v~  211 (340)
                         .|+|+
T Consensus        81 ---~l~V~   85 (87)
T 2hzc_A           81 ---SLKIR   85 (87)
T ss_dssp             ---ECEEE
T ss_pred             ---EEEEe
Confidence               88886

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.40  E-value=4.1e-13  Score=101.42  Aligned_cols=72  Identities=10%  Similarity=0.075  Sum_probs=60.9

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.+  |++|+++|++||+|.+|.++..    .++++|||+|.+.++|++|++ +++..         +.|
T Consensus        10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~---------~~g   79 (87)
T 3s7r_A           10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHR---------LDG   79 (87)
T ss_dssp             CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEE---------ETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCE---------ECC
Confidence            5678999999854  8999999999999999988762    346789999999999999995 57766         469


Q ss_pred             ceEEEeec
Q 019494           80 CTLRITYS   87 (340)
Q Consensus        80 ~~l~v~~s   87 (340)
                      +.|+|++|
T Consensus        80 ~~i~v~~A   87 (87)
T 3s7r_A           80 RVIDPKKA   87 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            99999875

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=2e-13  Score=106.22  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +..+|||.+++.  +|+||+++|++||.|.-+....+..++||||+|.+.++|++|++.|||..|         .++.|+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~   84 (101)
T 2fc9_A           14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI---------EGRAIR   84 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---------TTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---------CCeEEE
Confidence            457889999885  489999999999998322111134567899999999999999999999884         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |++++.+
T Consensus        85 v~~a~~~   91 (101)
T 2fc9_A           85 LELQGPR   91 (101)
T ss_dssp             EEECSSC
T ss_pred             EEEcCCC
Confidence            9999865

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=9e-13  Score=104.51  Aligned_cols=75  Identities=12%  Similarity=0.210  Sum_probs=65.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ..+|+  |+||++++|+++|+++|+.| .|++|+|..+    .+|+ |||+|.+.++|.+|+ .||+..|.++   .|+|
T Consensus        16 ~~~v~--V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al-~~~~~~~~gr---~i~V   87 (109)
T 2dnn_A           16 DLYVS--VHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGN-GLVKFLSPQDTFEAL-KRNRMLMIQR---YVEV   87 (109)
T ss_dssp             HHEEE--EECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSE-EEEECSSHHHHHHHH-HTTTEEETTE---EEEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeE-EEEEECCHHHHHHHH-hcCCCeECCe---EEEE
Confidence            34555  99999999999999999999 8999998743    3576 999999999999999 6999999998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      ..+....
T Consensus        88 ~~a~~~~   94 (109)
T 2dnn_A           88 SPATERQ   94 (109)
T ss_dssp             EECCHHH
T ss_pred             EECCccc
Confidence            8876543

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.39  E-value=8.4e-13  Score=116.64  Aligned_cols=78  Identities=21%  Similarity=0.257  Sum_probs=68.6

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+.++|+++|+++|++||+|++|+|..++     +|+ |||+|.+.++|.+|++.||+..+.++   .|
T Consensus        14 p~~tlf--VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~~~~~~~~g~---~i   87 (213)
T 4f02_A           14 PMASLY--VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGY-AYVNFQQPADAERALDTMNFDVIKGK---PV   87 (213)
T ss_dssp             -CCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred             CCcEEE--EeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCcccc-ccceeCCHHHHHHHHHHhhhhhcCCc---cc
Confidence            466777  89999999999999999999999999987532     355 99999999999999999999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      ++.++....
T Consensus        88 ~~~~~~~~~   96 (213)
T 4f02_A           88 RIMWSQRDP   96 (213)
T ss_dssp             EEEECCCCT
T ss_pred             ccccccccc
Confidence            999986553

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.39  E-value=3.1e-13  Score=109.09  Aligned_cols=74  Identities=16%  Similarity=0.194  Sum_probs=64.1

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.  +|+||+++|++||+|.+|.+++.    .+++||||+|.+.++|++|+ .|||..|         .|+
T Consensus        36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~  105 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---------RGR  105 (124)
T ss_dssp             HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---------TTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---------CCe
Confidence            45789988874  48999999999999999988762    35678999999999999999 8999884         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|+|++++..
T Consensus       106 ~l~V~~a~~~  115 (124)
T 2jwn_A          106 TIKVLPKRTN  115 (124)
T ss_dssp             ECEEEESSCC
T ss_pred             EEEEEECCCC
Confidence            9999998854

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.39  E-value=3.7e-13  Score=113.22  Aligned_cols=76  Identities=21%  Similarity=0.247  Sum_probs=66.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.  +|++|+++|+.||+|.+|.+.+    +.+++||||+|.+.++|.+|++.|||..|         .|
T Consensus        69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g  139 (158)
T 2kn4_A           69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---------DG  139 (158)
T ss_dssp             BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            356889999985  4899999999999999998876    23667899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus       140 ~~l~v~~a~~~  150 (158)
T 2kn4_A          140 RELRVQMARYG  150 (158)
T ss_dssp             SEEEEEEECCS
T ss_pred             eEEEEEECCCC
Confidence            99999999865

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.39  E-value=2.1e-13  Score=105.06  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+..+|||++++.  +|++|+++|+.||+|..+ ...+.++++|||+|.+.++|.+|++.|||..|         .|++|
T Consensus        14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l   83 (96)
T 1fjc_A           14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSV   83 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---------TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEE
Confidence            3567899999884  489999999999999887 22234567899999999999999999999884         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        84 ~v~~a~~~   91 (96)
T 1fjc_A           84 SLYYTGEK   91 (96)
T ss_dssp             EEEECSSS
T ss_pred             EEEEcCCC
Confidence            99998754

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.39  E-value=3.1e-13  Score=106.58  Aligned_cols=77  Identities=16%  Similarity=0.132  Sum_probs=67.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ..+|+  |+||++++|+++|+++|+.||.   |..|+|..+    .+|+ |||+|.+.++|.+|++ ||+..|.++   .
T Consensus        11 ~~~l~--V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~   83 (107)
T 2lmi_A           11 VFLIR--AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGD-ALIEMESEQDVQKALE-KHRMYMGQR---Y   83 (107)
T ss_dssp             CCEEE--EECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSE-EEEEBSSHHHHHHHHT-TTTCCSSSS---C
T ss_pred             ccEEE--EeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCcceeCCe---E
Confidence            45555  8999999999999999999998   899988643    3566 9999999999999999 999999998   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|.+++..+.
T Consensus        84 i~V~~a~~~~~   94 (107)
T 2lmi_A           84 VEVYEINNEDV   94 (107)
T ss_dssp             CCCEECCHHHH
T ss_pred             EEEEECCHHHH
Confidence            99999876553

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.39  E-value=5e-13  Score=105.77  Aligned_cols=75  Identities=12%  Similarity=0.072  Sum_probs=62.6

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||++++.+  |++|+++|+.||+|.+|.+++    +.+++||||+|.+.++|.+|++.+ |..         +.|
T Consensus        24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~---------l~g   93 (109)
T 2rs2_A           24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHE---------LDS   93 (109)
T ss_dssp             --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEE---------ETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCc---------CCC
Confidence            4567899998844  899999999999999999876    235678999999999999999876 455         579


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      +.|+|.++..+
T Consensus        94 ~~l~V~~a~~~  104 (109)
T 2rs2_A           94 KTIDPKVAFPR  104 (109)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEEEccCC
Confidence            99999998855

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.39  E-value=7.1e-13  Score=104.37  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             CCcEEEEEeecCC--CCCC--------HHHHHHHHcccCCeeEEEEEcC-------CCCeEEEEEcCChHHHHHHHHHhc
Q 019494          134 ESNVLLASIENMQ--YAVT--------LDVLHMVFSAFGPVQKIAMFDK-------NGGLQALIQYPDVQTAVVAKEALE  196 (340)
Q Consensus       134 ~s~vl~v~v~nl~--~~vt--------~~~L~~~F~~fG~v~~v~i~~~-------~~g~~afV~F~~~~~A~~A~~~ln  196 (340)
                      ++++|.  +.|+-  ..+.        +++|+++|++||+|++|+|.+.       .+|+ |||+|++.++|.+|++.||
T Consensus         4 ps~vl~--L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~-~fV~f~~~~~A~~Ai~~ln   80 (105)
T 3v4m_A            4 PTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK-IFVEFTSVFDCQKAMQGLT   80 (105)
T ss_dssp             CCSEEE--EESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTE-EEEEESSHHHHHHHHHHHT
T ss_pred             CCeEEE--EECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEE-EEEEECCHHHHHHHHHHhC
Confidence            588888  77873  2333        3689999999999999998753       3576 9999999999999999999


Q ss_pred             CCeeCCCCccEEEEEeecCCC
Q 019494          197 GHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       197 g~~i~~~~~~~l~v~~ak~~~  217 (340)
                      |..+.|+   .|+|+|+....
T Consensus        81 G~~f~GR---~i~v~~~~~~~   98 (105)
T 3v4m_A           81 GRKFANR---VVVTKYCDPDS   98 (105)
T ss_dssp             TCEETTE---ECEEEEECHHH
T ss_pred             CCEeCCC---EEEEEEeCHHH
Confidence            9999999   99999987654

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-13  Score=112.35  Aligned_cols=75  Identities=9%  Similarity=0.115  Sum_probs=64.0

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeE--EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCC----CCCccCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHK--ITTFE----KTAGFQALVQFSDTETASSAKNALDGR----SIPRYLL   73 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~--v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~----~i~~~~~   73 (340)
                      +..+|||++++.  +|++|+++|++||+|.+  |++++    +.+++||||+|.+. +|.+|++.|||.    .      
T Consensus        22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~------   94 (131)
T 2m2b_A           22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT------   94 (131)
T ss_dssp             CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC------
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc------
Confidence            456799999884  38999999999999966  87775    23567899999999 999999999998    6      


Q ss_pred             CCCCCCceEEEeeccCC
Q 019494           74 PENMGPCTLRITYSAHT   90 (340)
Q Consensus        74 ~~~~~~~~l~v~~s~~~   90 (340)
                         +.|++|+|++++.+
T Consensus        95 ---~~gr~l~V~~a~~~  108 (131)
T 2m2b_A           95 ---IDGKTINVEFAKGS  108 (131)
T ss_dssp             ---GGGCCCCCEECCCS
T ss_pred             ---CCCEEEEEEECCCC
Confidence               46999999999865

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.38  E-value=6.5e-13  Score=105.60  Aligned_cols=63  Identities=27%  Similarity=0.304  Sum_probs=56.3

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      |++|+++|++||+|.+|.+..+..+++|||+|.+.++|.+|++.|||..|         .|++|+|+|+..+
T Consensus        40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---------~gr~l~v~~a~~~  102 (112)
T 2dit_A           40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF---------GGRQITAQAWDGT  102 (112)
T ss_dssp             HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE---------TTEECEEEECCSC
T ss_pred             HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEEEEEeCCC
Confidence            47999999999999999776555678999999999999999999999985         6999999998754

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.37  E-value=4.5e-13  Score=106.91  Aligned_cols=74  Identities=9%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||.+++.  +|++|+++|+.||+|.+|.+++.    ..++||||+|.+.++|.+|++. ++..         +.|+
T Consensus        27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~---------~~g~   96 (116)
T 1x4b_A           27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS---------IDGR   96 (116)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE---------ETTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE---------ECCE
Confidence            46789998884  48999999999999999988762    3467899999999999999987 8877         4699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|+|.+++.+
T Consensus        97 ~l~V~~a~~~  106 (116)
T 1x4b_A           97 VVEPKRAVAR  106 (116)
T ss_dssp             EEEEECCSSC
T ss_pred             EEEEEECCCC
Confidence            9999998865

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.37  E-value=8.5e-13  Score=103.45  Aligned_cols=77  Identities=21%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeE-EEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHK-ITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~-v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...+|||++++.+  |+||+++|+.||.|.+ |.+..   +..++||||+|.+.++|++|++. |+..         +.+
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~---------~~g   83 (104)
T 1wg5_A           14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKER---------IGH   83 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCC---------SSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccch---------hCC
Confidence            3567899888844  8999999999999987 76654   34567899999999999999987 8877         479


Q ss_pred             ceEEEeeccCCcc
Q 019494           80 CTLRITYSAHTDL   92 (340)
Q Consensus        80 ~~l~v~~s~~~~l   92 (340)
                      +.|+|.+++.+++
T Consensus        84 r~i~v~~~~~~~~   96 (104)
T 1wg5_A           84 RYIEIFKSSRAEV   96 (104)
T ss_dssp             SCCEEEEECTTTS
T ss_pred             cEEEEEECCHHHH
Confidence            9999999876543

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.37  E-value=7e-13  Score=105.97  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=58.6

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce--
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT--   81 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~--   81 (340)
                      ...+|||.+++.  +|+||+++|++||+|.+|.+++.   +||||+|.+.++|++||+.|||..|         .|++  
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~---------~gr~~~   82 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEGE   82 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBC---------CCTTSC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEE---------CCcEee
Confidence            456789988874  38999999999999999998753   6899999999999999999999985         5777  


Q ss_pred             ---EEEeecc
Q 019494           82 ---LRITYSA   88 (340)
Q Consensus        82 ---l~v~~s~   88 (340)
                         |+|..+.
T Consensus        83 ~~~i~v~~~~   92 (115)
T 3beg_B           83 TAYIRVKVDG   92 (115)
T ss_dssp             CCBCEEEECC
T ss_pred             eEEEEeccCC
Confidence               5555544

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.37  E-value=1.7e-13  Score=106.55  Aligned_cols=75  Identities=12%  Similarity=0.061  Sum_probs=62.5

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +..+|||++++.+  |++|+++|+.||.|.++++..   +.+++||||+|.+.++|++|++ |||..|         .|+
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---------~g~   85 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---------FGN   85 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---------TTB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---------CCc
Confidence            4568899998854  899999999999988732222   3467789999999999999998 999985         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|+|++++.+
T Consensus        86 ~l~V~~a~~~   95 (101)
T 1fj7_A           86 EIKLEKPKGR   95 (101)
T ss_dssp             CCEEECCSCC
T ss_pred             EEEEEEcCCC
Confidence            9999998865

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=3.4e-12  Score=99.51  Aligned_cols=65  Identities=25%  Similarity=0.387  Sum_probs=57.7

Q ss_pred             CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          147 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       147 ~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      ..+|+++|+++|++||+|++|.|..+.+|+ |||+|++.++|.+|++.+++  +.++   .|+|+|++...
T Consensus        27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGf-aFVeF~~~~~A~~Ai~~~~~--~~g~---~l~V~~a~~~~   91 (100)
T 2d9o_A           27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGT-AVVEFATVKAAELAVQNEVG--LVDN---PLKISWLEGQP   91 (100)
T ss_dssp             CSCCHHHHHHHHHTTSCEEEEEEESSSSSE-EEEEESCHHHHHHHHHTCCB--CSSS---BCEEECSSCCC
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEccCCCCE-EEEEECCHHHHHHHHHhcCC--CCCC---eEEEEEccCCC
Confidence            468999999999999999999998777886 99999999999999998655  5677   99999987654

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.36  E-value=5.7e-13  Score=103.78  Aligned_cols=75  Identities=11%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|.+|+|..++    +|+ |||+|.+.++|.+|++  ++..+.|+   .|+|
T Consensus         9 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~Ai~--~~~~~~g~---~l~v   80 (102)
T 2xs2_A            9 PNTVF--VGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGY-GFVSFYNDVDVQKIVE--SQINFHGK---KLKL   80 (102)
T ss_dssp             EEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSCCCHHHHTT--CCCEETTE---ECEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHh--CCCeECCE---EEEE
Confidence            45555  89999999999999999999999999987643    355 9999999999999999  99999998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      .++....
T Consensus        81 ~~a~~~~   87 (102)
T 2xs2_A           81 GPAIRKQ   87 (102)
T ss_dssp             EEEEECC
T ss_pred             EECCcCc
Confidence            9987544

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.36  E-value=8.8e-13  Score=112.06  Aligned_cols=76  Identities=20%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +..+|||.+++.  ++++|+++|++||+|.+|.++..    ..++||||+|.+.++|.+||+.|||..|         .|
T Consensus        71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g  141 (165)
T 1rk8_A           71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------MG  141 (165)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            445799999884  48999999999999999988762    2467899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|.|++.+
T Consensus       142 ~~l~V~~a~~~  152 (165)
T 1rk8_A          142 QTIQVDWCFVK  152 (165)
T ss_dssp             EECEEEESEEC
T ss_pred             EEEEEEEecCC
Confidence            99999998754

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.36  E-value=1.2e-12  Score=102.14  Aligned_cols=75  Identities=13%  Similarity=0.041  Sum_probs=63.0

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      .+..+|||.+++.  +|++|+++|++||+|.+|.+++.    .+++||||+|.+.++|++|++  ++..         +.
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~---------~~   81 (103)
T 2cqg_A           13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHM---------ID   81 (103)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEE---------ET
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCe---------eC
Confidence            3567899999884  48999999999999999988762    346789999999999999998  4544         47


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      |+.|+|.+++.+
T Consensus        82 g~~l~v~~a~~~   93 (103)
T 2cqg_A           82 GRWCDCKLPNSK   93 (103)
T ss_dssp             TEEEEEECCCTT
T ss_pred             CeEEEEEecCCC
Confidence            999999998865

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.5e-12  Score=109.17  Aligned_cols=74  Identities=23%  Similarity=0.405  Sum_probs=66.5

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH  215 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~  215 (340)
                      |+|+|||.++|+++|+++|+.||.|.+|++...+    +|+ |||+|.+.++|.+|++.|||..+.++   .|+|.+++.
T Consensus         3 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~i~v~~~~~   78 (166)
T 3md3_A            3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNY-AFVEYHQSHDANIALQTLNGKQIENN---IVKINWAFQ   78 (166)
T ss_dssp             EEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCC
T ss_pred             EEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCE-EEEEeCCHHHHHHHHHHcCCCccCCC---eeEEEEcCC
Confidence            4499999999999999999999999999987543    354 99999999999999999999999998   999999876


Q ss_pred             CC
Q 019494          216 TD  217 (340)
Q Consensus       216 ~~  217 (340)
                      ..
T Consensus        79 ~~   80 (166)
T 3md3_A           79 SQ   80 (166)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=9.1e-13  Score=100.45  Aligned_cols=74  Identities=11%  Similarity=0.033  Sum_probs=63.4

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...+|||++++.+  |+||+++|+.| .|.+|.+++.   ..+++|||+|.+.++|++|++ |||..|         .|+
T Consensus         9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---------~gr   77 (91)
T 2dgw_A            9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM---------GGR   77 (91)
T ss_dssp             CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---------TTE
T ss_pred             CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee---------CCc
Confidence            3467899888843  89999999999 9999988763   346689999999999999999 999884         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|+|.+++.+
T Consensus        78 ~i~v~~a~~~   87 (91)
T 2dgw_A           78 YIEVFREKSG   87 (91)
T ss_dssp             EEEEEEESSC
T ss_pred             EEEEEECCcC
Confidence            9999998765

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.35  E-value=6.2e-13  Score=110.16  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeE--------EEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHK--------ITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLL   73 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~--------v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~   73 (340)
                      .+..+|||+|++.  +|++|+++|+.||.|.+        |++.+ +.+++||||+|.+.++|.+|++.|||..|     
T Consensus        43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~-----  117 (143)
T 3egn_A           43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL-----  117 (143)
T ss_dssp             SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE-----
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-----
Confidence            4667899999884  48999999999999876        44433 45677999999999999999999999985     


Q ss_pred             CCCCCCceEEEeeccCC
Q 019494           74 PENMGPCTLRITYSAHT   90 (340)
Q Consensus        74 ~~~~~~~~l~v~~s~~~   90 (340)
                          .|++|+|+|++..
T Consensus       118 ----~g~~l~V~~a~~~  130 (143)
T 3egn_A          118 ----FGKPMVVQFARSA  130 (143)
T ss_dssp             ----TTEECEEEECCCS
T ss_pred             ----CCcEEEEEECCCC
Confidence                6999999999754

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1e-12  Score=102.28  Aligned_cols=76  Identities=16%  Similarity=0.185  Sum_probs=60.5

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +..+|||.+++.  +|+||+++|+.|+.|.-+.... +..++||||+|.+.++|++|++.|||..|         .|+.|
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l   84 (102)
T 2fc8_A           14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---------DGNKV   84 (102)
T ss_dssp             CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred             CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---------CCeEE
Confidence            567889999884  4899999999886443322111 23457899999999999999999999985         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        85 ~V~~a~~~   92 (102)
T 2fc8_A           85 TLDWAKPK   92 (102)
T ss_dssp             EEEECCCC
T ss_pred             EEEEecCC
Confidence            99999865

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.34  E-value=4.3e-13  Score=110.97  Aligned_cols=75  Identities=13%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ..+|+  |.||++++|+++|+++|+.|| |++|+|..+    ++|+ |||+|++.++|.+|+ .+|+..|.++   .|+|
T Consensus        46 ~~~lf--V~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGf-aFV~F~~~e~A~~Al-~~~g~~l~gR---~i~V  117 (139)
T 2hgn_A           46 GHCVH--MRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGE-ADVEFATHEEAVAAM-SKDRANMQHR---YIEL  117 (139)
T ss_dssp             CCCEE--CCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCC-CEEECSHHHHHHHHT-TCCSCSSSSC---CCCC
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceE-EEEEeCCHHHHHHHH-hhCCCEECCE---EEEE
Confidence            44555  999999999999999999999 779988643    3566 999999999999999 7899999999   8999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      ..+....
T Consensus       118 ~~a~~~~  124 (139)
T 2hgn_A          118 FLNSTTG  124 (139)
T ss_dssp             EECCCSC
T ss_pred             EECCCCC
Confidence            8876544

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.34  E-value=7.1e-13  Score=118.83  Aligned_cols=75  Identities=15%  Similarity=0.097  Sum_probs=65.1

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccC--ceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFG--FVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG--~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ..+|||++++.  +|++|+++|++||  +|.+|+|++.    .+++||||+|.+.++|++||+.|||..|         .
T Consensus        68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---------~  138 (229)
T 3q2s_C           68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---------H  138 (229)
T ss_dssp             -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---------T
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---------C
Confidence            45699999884  4899999999999  9999988762    3567899999999999999999999985         6


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      |++|+|.+++..
T Consensus       139 Gr~l~V~~a~~~  150 (229)
T 3q2s_C          139 GQNPVVTPVNKQ  150 (229)
T ss_dssp             TBCCEEEECCHH
T ss_pred             CEEeEEEECCCC
Confidence            999999998754

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.34  E-value=1.3e-12  Score=99.61  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +...|||++++.  +|++|+++|++||+|.+|.++++ +++||||+|.+.++|++    |+|..+.       +.+++|+
T Consensus        10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~-------~~g~~v~   77 (89)
T 3d2w_A           10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI-------IKGISVH   77 (89)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE-------ETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc-------cCCEEEE
Confidence            346789988884  48999999999999999998865 56789999999999983    5776653       5799999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |.+++.+
T Consensus        78 v~~a~~k   84 (89)
T 3d2w_A           78 ISNAEPK   84 (89)
T ss_dssp             EEECC--
T ss_pred             EEEcCCC
Confidence            9998754

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.34  E-value=3.9e-13  Score=98.54  Aligned_cols=69  Identities=13%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +|||++++.+  |++|+++|++||+|.+|.+.+    +.++++|||+|.+.++|++|++. ++..         +.|+.|
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~---------~~g~~l   70 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN---------VGLSKC   70 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC---------BTTBCC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe---------ECCEEE
Confidence            4788888743  899999999999999998865    23567899999999999999984 7776         469999


Q ss_pred             EEeec
Q 019494           83 RITYS   87 (340)
Q Consensus        83 ~v~~s   87 (340)
                      +|+++
T Consensus        71 ~v~~a   75 (75)
T 1iqt_A           71 EIKVA   75 (75)
T ss_dssp             CEEEC
T ss_pred             EEEEC
Confidence            98874

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.34  E-value=1.4e-12  Score=112.28  Aligned_cols=77  Identities=16%  Similarity=0.087  Sum_probs=67.1

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      .+..+|||.+++.  +|+||+++|+.||+|.+|.+..   +.++++|||+|.+.++|.+|++.|||..|         .|
T Consensus        86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---------~G  156 (177)
T 2f3j_A           86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---------DG  156 (177)
T ss_dssp             TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC---------SS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---------CC
Confidence            3457899999984  4899999999999999998876   33567899999999999999999999984         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|+++...
T Consensus       157 r~l~V~~a~~~  167 (177)
T 2f3j_A          157 RPMDIQLVASQ  167 (177)
T ss_dssp             SBCEEEEESSG
T ss_pred             EEEEEEEecCC
Confidence            99999998865

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.02  E-value=1e-13  Score=110.77  Aligned_cols=77  Identities=17%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeE--------EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHK--------ITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPR   70 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~--------v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~   70 (340)
                      .+..+|||++++.+  |++|+++|++||.|.+        |.++.    +..++||||+|.+.++|++|++.|||..|  
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--   82 (116)
T 2lcw_A            5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF--   82 (116)
Confidence            45678999999843  8999999999999998        76654    23567899999999999999999999884  


Q ss_pred             cCCCCCCCCceEEEeeccCC
Q 019494           71 YLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        71 ~~~~~~~~~~~l~v~~s~~~   90 (340)
                             .|++|+|++++.+
T Consensus        83 -------~g~~l~V~~a~~~   95 (116)
T 2lcw_A           83 -------SGNPIKVSFATRR   95 (116)
Confidence                   6999999998865

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.33  E-value=2.9e-12  Score=112.46  Aligned_cols=77  Identities=18%  Similarity=0.374  Sum_probs=67.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|++|+|..+     .+|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus        28 ~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g~---~l~  101 (216)
T 2qfj_A           28 MSRVY--VGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF-AFVEYEVPEAAQLALEQMNSVMLGGR---NIK  101 (216)
T ss_dssp             HTEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSE-EEEEESSHHHHHHHHHHHSSCCCC-C---CCE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCce-EEEEeCCHHHHHHHHHHccCCeeCCe---eEE
Confidence            45666  8999999999999999999999999998653     3565 99999999999999999999999999   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.++....
T Consensus       102 v~~~~~~~  109 (216)
T 2qfj_A          102 VGRPSNIG  109 (216)
T ss_dssp             EECCSCCG
T ss_pred             EecCCCcc
Confidence            99876543

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=7e-13  Score=107.41  Aligned_cols=77  Identities=12%  Similarity=0.176  Sum_probs=65.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCe----eEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC  206 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v----~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~  206 (340)
                      ..+|+  |.||++++|+++|+++|+.||.|    ..|.|..+.    +|+ |||+|++.++|.+|++. |+..|.++   
T Consensus        23 ~~~v~--V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~-aFV~F~~~~~A~~Al~~-~~~~l~gR---   95 (123)
T 2dha_A           23 QVIVR--MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGD-AFVLFACEEYAQNALRK-HKDLLGKR---   95 (123)
T ss_dssp             CCEEE--ECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEE-EEECCSSHHHHHHHHTT-TTEESSSC---
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHHh-CCCeeCCe---
Confidence            45666  99999999999999999999986    578876532    465 99999999999999996 99999998   


Q ss_pred             EEEEEeecCCCC
Q 019494          207 KLHISYSRHTDL  218 (340)
Q Consensus       207 ~l~v~~ak~~~~  218 (340)
                      .|+|..+..++.
T Consensus        96 ~i~V~~a~~~e~  107 (123)
T 2dha_A           96 YIELFRSTAAEV  107 (123)
T ss_dssp             EECCEEECHHHH
T ss_pred             EEEEEECCHHHH
Confidence            999998876543

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.33  E-value=3e-12  Score=102.95  Aligned_cols=78  Identities=17%  Similarity=0.244  Sum_probs=65.5

Q ss_pred             CCcEEEEEeecCCC--CC---CHHHHHHHHcccCCeeEEEEEcCC---------CCeEEEEEcCChHHHHHHHHHhcCCe
Q 019494          134 ESNVLLASIENMQY--AV---TLDVLHMVFSAFGPVQKIAMFDKN---------GGLQALIQYPDVQTAVVAKEALEGHC  199 (340)
Q Consensus       134 ~s~vl~v~v~nl~~--~v---t~~~L~~~F~~fG~v~~v~i~~~~---------~g~~afV~F~~~~~A~~A~~~lng~~  199 (340)
                      +++||+  +.|+-.  ++   -+++|++.|++||+|++|+|...+         +|+ +||+|.+.++|.+|++.|||..
T Consensus        19 ps~vl~--L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~-~FV~F~~~e~A~~Ai~~LnGr~   95 (118)
T 3ue2_A           19 ESTVMV--LRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRW   95 (118)
T ss_dssp             SCCEEE--EESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEE-EEEEESSHHHHHHHHHHHTTCE
T ss_pred             CCCEEE--EECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEE-EEEEECCHHHHHHHHHHHCCCE
Confidence            588888  778742  22   368899999999999999987542         265 9999999999999999999999


Q ss_pred             eCCCCccEEEEEeecCCC
Q 019494          200 IYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       200 i~~~~~~~l~v~~ak~~~  217 (340)
                      +.|+   .|+|+|+....
T Consensus        96 f~GR---~i~v~~~~~~~  110 (118)
T 3ue2_A           96 FAGR---KVVAEVYDQER  110 (118)
T ss_dssp             ETTE---ECEEEEECHHH
T ss_pred             ECCc---EEEEEEcChHh
Confidence            9999   99999987644

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=4.4e-12  Score=101.05  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=58.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc--------CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC  206 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~--------~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~  206 (340)
                      ++.|+  |+||+.++|+++|+++|++||.|. +++..        +.+|+ |||+|++.++|.+|++.|++  +.|+   
T Consensus         8 ~~~lf--VgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~-aFV~f~~~~~a~~Ai~~~~~--~~G~---   78 (114)
T 2dnl_A            8 SRKVF--VGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGY-AFLLFQEESSVQALIDACLE--EDGK---   78 (114)
T ss_dssp             CCCEE--EECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSE-EEECCSSHHHHHHHHHHSEE--ETTE---
T ss_pred             CCEEE--EcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccE-EEEEECCHHHHHHHHHhhhh--cCCc---
Confidence            55666  899999999999999999999999 76643        23576 99999999999999999953  6666   


Q ss_pred             EEEEEeec
Q 019494          207 KLHISYSR  214 (340)
Q Consensus       207 ~l~v~~ak  214 (340)
                      .|.+..+.
T Consensus        79 ~~~~~~~~   86 (114)
T 2dnl_A           79 LYLCVSSP   86 (114)
T ss_dssp             EEEEECCS
T ss_pred             EEEeccCC
Confidence            67766554

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.32  E-value=9e-13  Score=105.86  Aligned_cols=75  Identities=15%  Similarity=0.058  Sum_probs=63.5

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCc---eeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~---V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ...|||++++.  +|+||+++|+.||.   |.+|+++.   +..+++|||+|.+.++|++|++ ||+..|         .
T Consensus        17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---------~   86 (118)
T 2db1_A           17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM---------G   86 (118)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE---------T
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE---------C
Confidence            45689988884  48999999999999   88998875   2346789999999999999999 999874         7


Q ss_pred             CceEEEeeccCCc
Q 019494           79 PCTLRITYSAHTD   91 (340)
Q Consensus        79 ~~~l~v~~s~~~~   91 (340)
                      ++.|+|.+++.++
T Consensus        87 gr~i~V~~a~~~~   99 (118)
T 2db1_A           87 HRYIEVFKSHRTE   99 (118)
T ss_dssp             TEEEEEEEECHHH
T ss_pred             CeEEEEEECCHHH
Confidence            9999999987554

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.32  E-value=1.6e-12  Score=98.01  Aligned_cols=70  Identities=20%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             cccccccCCCCCC--CHHHHHHhhccc----C-------ceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCcc
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRY   71 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~f----G-------~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~   71 (340)
                      ++..+|||++++.  +|++|+++|++|    |       +|.++.+.+  +++||||+|.+.++|.+|+ .|||..+   
T Consensus         4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~---   77 (87)
T 2hzc_A            4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF---   77 (87)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEE---
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEE---
Confidence            4667899999985  489999999999    8       999998875  4678999999999999999 9999984   


Q ss_pred             CCCCCCCCceEEEee
Q 019494           72 LLPENMGPCTLRITY   86 (340)
Q Consensus        72 ~~~~~~~~~~l~v~~   86 (340)
                            .|++|+|+.
T Consensus        78 ------~g~~l~V~r   86 (87)
T 2hzc_A           78 ------QGQSLKIRR   86 (87)
T ss_dssp             ------TTEECEEEC
T ss_pred             ------CCeEEEEeC
Confidence                  699999874

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.32  E-value=6.1e-12  Score=100.48  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=66.2

Q ss_pred             CCcEEEEEeecCCCCCC----------HHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494          134 ESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYD  202 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt----------~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~  202 (340)
                      ++++|.  +.|+-..-.          +++|+++|++||.|++|+|.+.. +|+ |||+|.+.++|.+|++.|||..+.|
T Consensus         6 ps~vv~--L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~-~fV~f~~~e~A~~Ai~~lnG~~f~G   82 (114)
T 3s6e_A            6 ATQCFQ--LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGN-VYVKCPSIAAAIAAVNALHGRWFAG   82 (114)
T ss_dssp             CCSEEE--EESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCC-EEEECSSHHHHHHHHHHHTTCEETT
T ss_pred             CCcEEE--EECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence            477877  677743221          45789999999999999997653 687 9999999999999999999999999


Q ss_pred             CCccEEEEEeecCCCCc
Q 019494          203 GGFCKLHISYSRHTDLS  219 (340)
Q Consensus       203 ~~~~~l~v~~ak~~~~~  219 (340)
                      +   .|+|+|+......
T Consensus        83 R---~i~v~~~~~~~y~   96 (114)
T 3s6e_A           83 K---MITAAYVPLPTYH   96 (114)
T ss_dssp             E---ECEEEEECHHHHH
T ss_pred             E---EEEEEEEcHHHHH
Confidence            9   9999999766543

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.32  E-value=1.8e-12  Score=101.38  Aligned_cols=73  Identities=15%  Similarity=0.053  Sum_probs=60.1

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..+|||.+++.+  |+||+++|+.||.| +|.++..   .++++|||+|.+.++|++|| .+|+..         +.++.
T Consensus        15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~---------~~gr~   83 (102)
T 1wez_A           15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKAN---------MQHRY   83 (102)
T ss_dssp             SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCC---------SSSSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCe---------ECCcE
Confidence            457888888844  89999999999955 8877652   34668999999999999999 579887         46999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|..+...
T Consensus        84 i~V~~~~~~   92 (102)
T 1wez_A           84 VELFLNSTA   92 (102)
T ss_dssp             CEEEEECCC
T ss_pred             EEEEECCCC
Confidence            999987754

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.32  E-value=3.6e-12  Score=107.86  Aligned_cols=80  Identities=14%  Similarity=0.264  Sum_probs=66.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      +++|+  |+||+.++|+++|+++|++||.|.+|++...       ++|+ |||+|.+.++|.+|++.|||..+.++....
T Consensus         3 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~~   79 (175)
T 3nmr_A            3 AIKMF--VGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC-CFVTFYTRKAALEAQNALHNMKVLPGMHHP   79 (175)
T ss_dssp             CEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEE-EEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred             ceEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceE-EEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence            45566  9999999999999999999999999998753       2354 999999999999999999999887433448


Q ss_pred             EEEEeecCCC
Q 019494          208 LHISYSRHTD  217 (340)
Q Consensus       208 l~v~~ak~~~  217 (340)
                      +++.+++...
T Consensus        80 ~~~~~~~~~~   89 (175)
T 3nmr_A           80 IQMKPADSEK   89 (175)
T ss_dssp             CEEEECGGGC
T ss_pred             eEEccccccc
Confidence            8888876544

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.32  E-value=9.1e-13  Score=105.03  Aligned_cols=76  Identities=11%  Similarity=0.034  Sum_probs=63.9

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCce-eEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFV-HKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V-~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +...|||++++.  +|+||+++|+.||.| .+|.++.   +..++||||+|.+.++|++||+. |+..         +.|
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~---------~~g   83 (114)
T 2cpy_A           14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKK---------LNG   83 (114)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEE---------ETT
T ss_pred             CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCc---------cCC
Confidence            346789988884  489999999999999 7888765   33567899999999999999986 8877         479


Q ss_pred             ceEEEeeccCCc
Q 019494           80 CTLRITYSAHTD   91 (340)
Q Consensus        80 ~~l~v~~s~~~~   91 (340)
                      +.|+|.+++.+.
T Consensus        84 r~i~v~~a~~~~   95 (114)
T 2cpy_A           84 REAFVHVVTLED   95 (114)
T ss_dssp             EEEEEEEECHHH
T ss_pred             eEEEEEECCHHH
Confidence            999999998653

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.32  E-value=2.1e-12  Score=116.14  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=65.5

Q ss_pred             cccccccCCCCCC-----------CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCC
Q 019494            5 WPLSRKYLQWQLS-----------ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL   73 (340)
Q Consensus         5 ~~~~~~~l~~~~~-----------~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~   73 (340)
                      .....|||++++.           +|++|+++|++||+|.+|++++  ++++|||+|.+.++|+.|++.|+|+.|.   +
T Consensus       132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~---~  206 (240)
T 3u1l_A          132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLL---L  206 (240)
T ss_dssp             CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCC---C
T ss_pred             cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEe---c
Confidence            3456789999874           3899999999999999999886  4578999999999999999999999861   0


Q ss_pred             CCC------CCCceEEEeeccCC
Q 019494           74 PEN------MGPCTLRITYSAHT   90 (340)
Q Consensus        74 ~~~------~~~~~l~v~~s~~~   90 (340)
                      +..      ..|+.|.|.|++.+
T Consensus       207 ~~~~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          207 PSDKEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             TTSTTGGGGGGSCCCEEEECC--
T ss_pred             cccccccccCCCCEEEEEEccCC
Confidence            000      06899999999854

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.31  E-value=6.2e-13  Score=107.58  Aligned_cols=75  Identities=12%  Similarity=0.043  Sum_probs=62.0

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEE-EEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKI-TTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v-~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...|||++++.  +|+||+++|+.||.|.++ ++..   +..++||||+|.+.++|++||+ |||..|         .|+
T Consensus        25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---------~gr   94 (124)
T 1wel_A           25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM---------GNR   94 (124)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---------TTS
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---------CCc
Confidence            45789988884  489999999999999874 3332   2346789999999999999999 999884         799


Q ss_pred             eEEEeeccCCc
Q 019494           81 TLRITYSAHTD   91 (340)
Q Consensus        81 ~l~v~~s~~~~   91 (340)
                      .|+|.+++.++
T Consensus        95 ~i~V~~a~~~~  105 (124)
T 1wel_A           95 FIQVHPITKKG  105 (124)
T ss_dssp             CBEEEEECHHH
T ss_pred             EEEEEECCHHH
Confidence            99999988654

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.30  E-value=1.3e-12  Score=107.70  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=63.4

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCc---eeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~---V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ..+|||++++.  +|+||+++|+.||+   |.+|++++   +.+++||||+|.+.++|++|++ |||..         +.
T Consensus        44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~---------l~  113 (136)
T 2hgl_A           44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRES---------MG  113 (136)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEE---------SS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCE---------EC
Confidence            45689988884  48999999999999   88888875   2346789999999999999999 99988         47


Q ss_pred             CceEEEeeccCCc
Q 019494           79 PCTLRITYSAHTD   91 (340)
Q Consensus        79 ~~~l~v~~s~~~~   91 (340)
                      ++.|+|.+++.++
T Consensus       114 gr~i~V~~a~~~e  126 (136)
T 2hgl_A          114 HRYIEVFKSHRTE  126 (136)
T ss_dssp             SSEEEEEECCHHH
T ss_pred             CEEEEEEECChHH
Confidence            9999999987553

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.30  E-value=3.3e-12  Score=120.63  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=65.2

Q ss_pred             CCCcEEEEEeec--CCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC-C-ccEE
Q 019494          133 PESNVLLASIEN--MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKL  208 (340)
Q Consensus       133 ~~s~vl~v~v~n--l~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~~l  208 (340)
                      .+++.|+  |+|  |+..+|+|+|+++|++||+|++|+|.+ ++|| |||+|++.++|++|++.|||.++.+. | ...|
T Consensus        16 ~ps~~l~--VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l   91 (345)
T 3tht_A           16 YATQSLV--VANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQKITL   91 (345)
T ss_dssp             SCCSEEE--EETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSE-EEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred             CCCCEEE--EEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCE-EEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence            4577888  666  688999999999999999999998876 4576 99999999999999999999998422 1 2268


Q ss_pred             EEEeec
Q 019494          209 HISYSR  214 (340)
Q Consensus       209 ~v~~ak  214 (340)
                      .|+|++
T Consensus        92 y~~~~~   97 (345)
T 3tht_A           92 YLNFVE   97 (345)
T ss_dssp             EEEECS
T ss_pred             EEEEee
Confidence            889985

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.30  E-value=2.7e-12  Score=102.51  Aligned_cols=64  Identities=20%  Similarity=0.157  Sum_probs=57.2

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCc
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD   91 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~   91 (340)
                      ++||++.|++||+|.+|.+.+...+++|||+|.+.++|.+|++.|||+.+         .|+.|+|+|+....
T Consensus        31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f---------~GR~i~v~~~~~~~   94 (114)
T 3s6e_A           31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF---------AGKMITAAYVPLPT   94 (114)
T ss_dssp             HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE---------TTEECEEEEECHHH
T ss_pred             HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEEEcHHH
Confidence            67899999999999999998755567899999999999999999999984         69999999987543

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.29  E-value=1e-11  Score=113.16  Aligned_cols=77  Identities=19%  Similarity=0.376  Sum_probs=69.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      .+++|+  |+||+.++|+++|+++|+.||.|..|+|.+.+ |+ |||+|.+.++|.+|++.|||..|.++   .|+|.|+
T Consensus        21 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-g~-afV~f~~~~~A~~A~~~l~g~~i~g~---~l~v~~a   93 (261)
T 3sde_A           21 QRCRLF--VGNLPTDITEEDFKRLFERYGEPSEVFINRDR-GF-GFIRLESRTLAEIAKAELDGTILKSR---PLRIRFA   93 (261)
T ss_dssp             GGGEEE--EESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-TE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-cE-EEEEECCHHHHHHHHHHcCCcEECCc---eeEeeec
Confidence            356666  89999999999999999999999999997654 65 99999999999999999999999998   9999999


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      ++..
T Consensus        94 ~~~~   97 (261)
T 3sde_A           94 THGA   97 (261)
T ss_dssp             CCSS
T ss_pred             ccCC
Confidence            7653

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.28  E-value=1.9e-12  Score=105.22  Aligned_cols=75  Identities=15%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCee--EEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--KIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~--~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ..+|+  |+||++++|+++|+++|+.| .|+  .|+|..+    .+|+ |||+|++.++|.+|++. ++..|.++   .|
T Consensus        42 ~~~lf--VgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGf-aFV~F~~~e~A~~Al~~-~~~~l~gR---~I  113 (126)
T 2hgm_A           42 DGFVR--LRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGE-AFVQFASQELAEKALGK-HKERIGHR---YI  113 (126)
T ss_dssp             CCEEE--EECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSE-EEEEESSTTHHHHHHTT-TTCCBTTB---CC
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceE-EEEEECCHHHHHHHHHH-CCCEECCE---EE
Confidence            45555  99999999999999999999 677  8887643    3576 99999999999999985 77999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|..+..++
T Consensus       114 ~V~~a~~~e  122 (126)
T 2hgm_A          114 EVFKSSQEE  122 (126)
T ss_dssp             CCEEECHHH
T ss_pred             EEEECCHHH
Confidence            998876543

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=102.54  Aligned_cols=76  Identities=13%  Similarity=0.017  Sum_probs=63.3

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCc---eeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~---V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ...+|||++++.  +|+||+++|+.||.   |.+|.++.   +.++++|||+|.+.++|++|++ ||+..         +
T Consensus        10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~---------~   79 (107)
T 2lmi_A           10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMY---------M   79 (107)
T ss_dssp             SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCC---------S
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcce---------e
Confidence            345688888873  37999999999998   89998875   3456789999999999999999 99987         4


Q ss_pred             CCceEEEeeccCCc
Q 019494           78 GPCTLRITYSAHTD   91 (340)
Q Consensus        78 ~~~~l~v~~s~~~~   91 (340)
                      .|+.|+|.+++.++
T Consensus        80 ~gr~i~V~~a~~~~   93 (107)
T 2lmi_A           80 GQRYVEVYEINNED   93 (107)
T ss_dssp             SSSCCCCEECCHHH
T ss_pred             CCeEEEEEECCHHH
Confidence            79999999987553

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.28  E-value=4.9e-12  Score=99.56  Aligned_cols=63  Identities=17%  Similarity=0.233  Sum_probs=55.7

Q ss_pred             HHHHHHhhcccCceeEEEEeee------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           19 SGERAHVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      ++||++.|++||+|.+|.+.+.      .++++|||+|.+.++|.+|++.|||+.+         .|++|+|+|+...
T Consensus        29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f---------~GR~i~v~~~~~~   97 (105)
T 3v4m_A           29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF---------ANRVVVTKYCDPD   97 (105)
T ss_dssp             HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEECHH
T ss_pred             HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe---------CCCEEEEEEeCHH
Confidence            4799999999999999998762      2467899999999999999999999985         6999999998754

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.27  E-value=1.4e-12  Score=102.43  Aligned_cols=68  Identities=16%  Similarity=0.245  Sum_probs=57.5

Q ss_pred             eecCCCCCCHHHHHHHH------------cccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          142 IENMQYAVTLDVLHMVF------------SAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       142 v~nl~~~vt~~~L~~~F------------~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      +.+|+..+|+++|+++|            ++||+|++|+|.+..    +|+ |||+|.+.++|.+|++.|||..+.|+  
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~-~fV~f~~~~~A~~A~~~lng~~~~Gr--   96 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN-VYVKFRREEDAEKAVIDLNNRWFNGQ--   96 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEE-EEEEESCHHHHHHHHHHHTTCEETTE--
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEE-EEEEECCHHHHHHHHHHHCCCEECCE--
Confidence            34565667777776666            999999999998643    576 99999999999999999999999999  


Q ss_pred             cEEEEEee
Q 019494          206 CKLHISYS  213 (340)
Q Consensus       206 ~~l~v~~a  213 (340)
                       .|+|+|+
T Consensus        97 -~i~v~~s  103 (104)
T 1jmt_A           97 -PIHAELS  103 (104)
T ss_dssp             -ECCEEEC
T ss_pred             -EEEEEEc
Confidence             9999986

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.27  E-value=3.4e-12  Score=96.69  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +..+|||++++.+  |++|+++|++||+|.+|.++++ +++||||+|.+.++|++|    ++..+.       +.+++|+
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~-------~~g~~l~   71 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLI-------IKGISVH   71 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEE-------ETTEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCce-------eCCEEEE
Confidence            5678999998854  8999999999999999998765 566899999999999754    555432       5799999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |.+++.+
T Consensus        72 v~~a~~~   78 (88)
T 1wf0_A           72 ISNAEPK   78 (88)
T ss_dssp             EECCCCC
T ss_pred             EEecCCC
Confidence            9998765

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.27  E-value=8.2e-12  Score=100.33  Aligned_cols=63  Identities=21%  Similarity=0.301  Sum_probs=55.6

Q ss_pred             HHHHHHhhcccCceeEEEEeeec--------CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           19 SGERAHVFSAFGFVHKITTFEKT--------AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~--------~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      |+||++.|++||+|.+|++.+..        ++++|||+|.+.++|.+|++.|||+.+         .|++|+|+|+...
T Consensus        39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f---------~GR~i~v~~~~~~  109 (118)
T 3ue2_A           39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---------AGRKVVAEVYDQE  109 (118)
T ss_dssp             HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEECHH
T ss_pred             HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE---------CCcEEEEEEcChH
Confidence            78999999999999999887732        236899999999999999999999984         6999999998753

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.26  E-value=1e-11  Score=107.29  Aligned_cols=77  Identities=16%  Similarity=0.284  Sum_probs=66.3

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      .+++|+  |+||+.++|+++|+++|+.||.|.+|+|....     +|+ |||+|.+.++|.+|++. ++..|.|+   .|
T Consensus        12 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~-~~~~~~g~---~l   84 (196)
T 1l3k_A           12 QLRKLF--IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF-GFVTYATVEEVDAAMNA-RPHKVDGR---VV   84 (196)
T ss_dssp             GGGEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHT-CSCEETTE---EC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccce-EEEEeCCHHHHHHHHhc-CCCEECCE---Ee
Confidence            356766  89999999999999999999999999987542     355 99999999999999976 99999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|.++....
T Consensus        85 ~v~~~~~~~   93 (196)
T 1l3k_A           85 EPKRAVSRE   93 (196)
T ss_dssp             EEEECCC--
T ss_pred             eeecccCcc
Confidence            999987653

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.26  E-value=5.1e-12  Score=99.25  Aligned_cols=59  Identities=19%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             HHHHHhh-cccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494           20 GERAHVF-SAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS   87 (340)
Q Consensus        20 e~L~~lF-~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s   87 (340)
                      +||++.| ++||+|.+|.+.+.   .++++|||+|.+.++|.+|++.|||+.+         .|++|+|+|+
T Consensus        41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~---------~Gr~i~v~~s  103 (104)
T 1jmt_A           41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF---------NGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEECCEEEC
T ss_pred             HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE---------CCEEEEEEEc
Confidence            5566666 99999999999863   3577899999999999999999999984         6999999986

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.26  E-value=2.4e-12  Score=100.24  Aligned_cols=74  Identities=9%  Similarity=0.082  Sum_probs=62.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      +..+|||++++.  +|++|+++|+.||.|.+|.+++.   ..++||||+|.+.++|++|++  ++..         +.|+
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~---------~~g~   76 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQIN---------FHGK   76 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCE---------ETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCe---------ECCE
Confidence            456889999884  48999999999999999988762   345789999999999999998  7776         4799


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|.|.++..+
T Consensus        77 ~l~v~~a~~~   86 (102)
T 2xs2_A           77 KLKLGPAIRK   86 (102)
T ss_dssp             ECEEEEEEEC
T ss_pred             EEEEEECCcC
Confidence            9999988744

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.26  E-value=6.8e-12  Score=101.24  Aligned_cols=73  Identities=16%  Similarity=0.265  Sum_probs=61.4

Q ss_pred             EEeecC----CCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCC----hHH----HHHHHH--HhcCCee
Q 019494          140 ASIENM----QYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPD----VQT----AVVAKE--ALEGHCI  200 (340)
Q Consensus       140 v~v~nl----~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~----~~~----A~~A~~--~lng~~i  200 (340)
                      |+|+||    ++.+++++|+++|+.||+|.+++++.+.     +|| |||+|.|    .++    |.+|++  .|||..|
T Consensus         5 I~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGf-gfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I   83 (136)
T 2j8a_A            5 IVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHV-YLIKYASSDGKINDAAKAAFSAVRKHESSGCFI   83 (136)
T ss_dssp             EEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEE-EEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeE-EEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence            448999    9999999999999999999999987543     466 9999996    333    889988  7899999


Q ss_pred             CCCCccEEEEEeecCC
Q 019494          201 YDGGFCKLHISYSRHT  216 (340)
Q Consensus       201 ~~~~~~~l~v~~ak~~  216 (340)
                      .|+   .|+|.+-+..
T Consensus        84 ~Gr---~irV~ln~~g   96 (136)
T 2j8a_A           84 MGF---KFEVILNKHS   96 (136)
T ss_dssp             TTE---EEEEEECCTT
T ss_pred             cCc---EEEEEECccc
Confidence            999   9999986544

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=7.2e-12  Score=99.26  Aligned_cols=72  Identities=8%  Similarity=0.018  Sum_probs=61.0

Q ss_pred             ccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            8 SRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         8 ~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ..|||++++-  +|+||+++|+.| .|.+|.++.   +.++++|||+|.+.++|++|+ .||+..|         .++.|
T Consensus        17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---------~gr~i   85 (109)
T 2dnn_A           17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---------IQRYV   85 (109)
T ss_dssp             HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE---------TTEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE---------CCeEE
Confidence            4688888874  489999999999 899998875   345678999999999999999 7999874         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|..++.+
T Consensus        86 ~V~~a~~~   93 (109)
T 2dnn_A           86 EVSPATER   93 (109)
T ss_dssp             EEEECCHH
T ss_pred             EEEECCcc
Confidence            99887654

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.25  E-value=2.9e-12  Score=105.95  Aligned_cols=74  Identities=15%  Similarity=0.054  Sum_probs=61.7

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ...|||.+++.+  |+||+++|+.|| |.+|.++.   +.+++||||+|.+.++|++|| .+|+..         +.++.
T Consensus        46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~---------l~gR~  114 (139)
T 2hgn_A           46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRAN---------MQHRY  114 (139)
T ss_dssp             CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCS---------SSSCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCE---------ECCEE
Confidence            346899988854  899999999999 66888875   235678999999999999999 789987         46999


Q ss_pred             EEEeeccCCc
Q 019494           82 LRITYSAHTD   91 (340)
Q Consensus        82 l~v~~s~~~~   91 (340)
                      |+|..++..+
T Consensus       115 i~V~~a~~~~  124 (139)
T 2hgn_A          115 IELFLNSTTG  124 (139)
T ss_dssp             CCCEECCCSC
T ss_pred             EEEEECCCCC
Confidence            9999887653

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.21  E-value=1.7e-11  Score=107.02  Aligned_cols=75  Identities=17%  Similarity=0.188  Sum_probs=64.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|..|+|...    .+|+ |||+|++.++|.+|++.++ ..+.|+   .|+|
T Consensus       109 ~~~l~--V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~-aFVeF~~~e~A~~A~~~~~-~~~~Gr---~l~V  181 (193)
T 2voo_A          109 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVETPG-QKYKET---DLLI  181 (193)
T ss_dssp             HTEEE--EECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEE-EEEEESSHHHHHHHHHCTT-CEETTE---ECEE
T ss_pred             cCEEE--ecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHhCC-CeECCE---EEEE
Confidence            45666  8999999999999999999999999998753    2465 9999999999999998765 489998   9999


Q ss_pred             EeecCC
Q 019494          211 SYSRHT  216 (340)
Q Consensus       211 ~~ak~~  216 (340)
                      .+++.-
T Consensus       182 ~~~~~y  187 (193)
T 2voo_A          182 LFKDDY  187 (193)
T ss_dssp             EETTTC
T ss_pred             EEhHHH
Confidence            986643

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.21  E-value=1.2e-11  Score=104.96  Aligned_cols=75  Identities=12%  Similarity=0.102  Sum_probs=63.6

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +..+|||.+++.  +|++|+++|++||+|..+ ...+.++++|||+|.+.++|.+|++.|||..|         .|++|+
T Consensus        98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~i~  167 (175)
T 1fje_B           98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSVS  167 (175)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---------TTEEEE
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEE
Confidence            456789998884  489999999999999887 22245677899999999999999999999884         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |+|++.+
T Consensus       168 v~~a~~k  174 (175)
T 1fje_B          168 LYYTGEK  174 (175)
T ss_dssp             EEECSSC
T ss_pred             EEecCCC
Confidence            9998754

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.20  E-value=1.7e-11  Score=115.86  Aligned_cols=77  Identities=13%  Similarity=0.119  Sum_probs=63.8

Q ss_pred             ccccccccCCCC--C--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            4 IWPLSRKYLQWQ--L--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         4 ~~~~~~~~l~~~--~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      -.|+..|||+|.  .  ++|++|+++|++||+|.+|++.+  +++||||+|.+.++|++|++.|||+.+..      ..|
T Consensus        15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~------~~g   86 (345)
T 3tht_A           15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVD------DLG   86 (345)
T ss_dssp             SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEEC------TTS
T ss_pred             CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCcccc------ccC
Confidence            467888999884  2  56899999999999999998765  56789999999999999999999998621      223


Q ss_pred             c--eEEEeecc
Q 019494           80 C--TLRITYSA   88 (340)
Q Consensus        80 ~--~l~v~~s~   88 (340)
                      +  +|++.|.+
T Consensus        87 ~~~~ly~~~~~   97 (345)
T 3tht_A           87 QKITLYLNFVE   97 (345)
T ss_dssp             CEEECEEEECS
T ss_pred             CceEEEEEEee
Confidence            4  78899975

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.20  E-value=2.9e-11  Score=102.17  Aligned_cols=74  Identities=20%  Similarity=0.383  Sum_probs=65.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHccc----C-------CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~f----G-------~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      +++|+  |+|||.++|+++|+++|+.|    |       .|.++.+...+ |+ |||+|.+.++|.+|+ .|||..+.|+
T Consensus         4 ~~~l~--V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-g~-afV~f~~~~~A~~A~-~~~~~~~~g~   78 (172)
T 2g4b_A            4 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NF-AFLEFRSVDETTQAM-AFDGIIFQGQ   78 (172)
T ss_dssp             GGEEE--EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-TE-EEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred             ccEEE--EcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-CE-EEEEeCCHHHHHHHH-HhCCcEecCc
Confidence            56666  89999999999999999999    7       78888887654 65 999999999999999 8999999998


Q ss_pred             CccEEEEEeecCC
Q 019494          204 GFCKLHISYSRHT  216 (340)
Q Consensus       204 ~~~~l~v~~ak~~  216 (340)
                         .|+|.+++..
T Consensus        79 ---~i~v~~~~~~   88 (172)
T 2g4b_A           79 ---SLKIRRPHDY   88 (172)
T ss_dssp             ---ECEEECCSSC
T ss_pred             ---eeeecCCccc
Confidence               9999987654

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.20  E-value=2e-11  Score=119.45  Aligned_cols=76  Identities=12%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +...|||+|++.  +|++|+++|+.||+|.+|.|+.    +..++||||+|.+.++|.+||+.|||..|         .|
T Consensus       101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---------~g  171 (437)
T 3pgw_S          101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---------DG  171 (437)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE---------CC
Confidence            346899999984  4899999999999999998875    23567899999999999999999999984         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      +.|.|.|++..
T Consensus       172 r~i~V~~a~~~  182 (437)
T 3pgw_S          172 RRVLVDVERGR  182 (437)
T ss_pred             EEEEEEEeCCC
Confidence            99999999854

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.7e-11  Score=96.43  Aligned_cols=60  Identities=12%  Similarity=0.035  Sum_probs=50.0

Q ss_pred             cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee-------ecCCceEEEEeCCHHHHHHHHHHhcC
Q 019494            5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-------KTAGFQALVQFSDTETASSAKNALDG   65 (340)
Q Consensus         5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-------~~~~~~AFVeF~~~e~A~~Ai~~lng   65 (340)
                      ....+|||++++.  +|++|+++|++||+|. ++++.       +.+++||||+|.+.++|++|++.|++
T Consensus         6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~   74 (114)
T 2dnl_A            6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE   74 (114)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh
Confidence            3567899999984  4899999999999999 65554       14577999999999999999999943

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=8.1e-12  Score=101.11  Aligned_cols=76  Identities=14%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCce----eEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFV----HKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN   76 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V----~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~   76 (340)
                      ....|||.+++-  +|+||+++|+.||+|    .+|.+++   +.++++|||+|.+.++|++|++. |+..         
T Consensus        22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~---------   91 (123)
T 2dha_A           22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL---------   91 (123)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEE---------
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCe---------
Confidence            345788888884  489999999999986    5787765   23467899999999999999985 8876         


Q ss_pred             CCCceEEEeeccCCc
Q 019494           77 MGPCTLRITYSAHTD   91 (340)
Q Consensus        77 ~~~~~l~v~~s~~~~   91 (340)
                      +.++.|+|..++.++
T Consensus        92 l~gR~i~V~~a~~~e  106 (123)
T 2dha_A           92 LGKRYIELFRSTAAE  106 (123)
T ss_dssp             SSSCEECCEEECHHH
T ss_pred             eCCeEEEEEECCHHH
Confidence            469999998887553

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.18  E-value=4.3e-11  Score=103.40  Aligned_cols=75  Identities=20%  Similarity=0.373  Sum_probs=65.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHccc----C-------CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~f----G-------~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      +++|+  |+||+.++|+++|+++|+.|    |       .|.++.+... +|+ |||+|.+.++|.+|+ .|||..|.|+
T Consensus         4 ~~~l~--V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-~g~-afV~F~~~~~A~~Al-~l~g~~~~g~   78 (198)
T 2yh0_A            4 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNF-AFLEFRSVDETTQAM-AFDGIIFQGQ   78 (198)
T ss_dssp             CCEEE--EESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-TTE-EEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred             eeEEE--EcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-CCE-EEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence            56666  89999999999999999999    5       6777777654 465 999999999999999 8999999998


Q ss_pred             CccEEEEEeecCCC
Q 019494          204 GFCKLHISYSRHTD  217 (340)
Q Consensus       204 ~~~~l~v~~ak~~~  217 (340)
                         .|+|.+++...
T Consensus        79 ---~i~v~~~~~~~   89 (198)
T 2yh0_A           79 ---SLKIRRPHDYQ   89 (198)
T ss_dssp             ---EEEEECCCCCC
T ss_pred             ---eEEEeCCCCCC
Confidence               99999887653

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.17  E-value=1.2e-11  Score=100.51  Aligned_cols=74  Identities=20%  Similarity=0.106  Sum_probs=59.9

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCcee--EEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVH--KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~--~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...|||++++.  +|+||+++|+.| .|.  +|+++.   +.+++||||+|.+.++|++|++ +++..         +.|
T Consensus        42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~---------l~g  110 (126)
T 2hgm_A           42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKER---------IGH  110 (126)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCC---------BTT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCE---------ECC
Confidence            45688888884  389999999999 566  887765   3456789999999999999998 47766         479


Q ss_pred             ceEEEeeccCCc
Q 019494           80 CTLRITYSAHTD   91 (340)
Q Consensus        80 ~~l~v~~s~~~~   91 (340)
                      +.|+|..++.++
T Consensus       111 R~I~V~~a~~~e  122 (126)
T 2hgm_A          111 RYIEVFKSSQEE  122 (126)
T ss_dssp             BCCCCEEECHHH
T ss_pred             EEEEEEECCHHH
Confidence            999999886543

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.17  E-value=3.7e-11  Score=101.00  Aligned_cols=74  Identities=14%  Similarity=0.273  Sum_probs=63.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+.++|+++|+++|+.||.|.+|++...     ++|+ |||+|.+.++|.+|++.  +..+.|+   .|+
T Consensus         3 ~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~--~~~~~g~---~i~   74 (167)
T 2cjk_A            3 SCKMF--IGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGF-GFLSFEKPSSVDEVVKT--QHILDGK---VID   74 (167)
T ss_dssp             GGEEE--ECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSC-EEEEESSTHHHHHHHHS--CCEETTE---ECC
T ss_pred             CcEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccce-EEEEEccHHHHHHHHhc--ccccCCe---Ecc
Confidence            55666  8999999999999999999999999998754     2466 99999999999999984  6678887   888


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |.++...
T Consensus        75 v~~~~~~   81 (167)
T 2cjk_A           75 PKRAIPR   81 (167)
T ss_dssp             CEECCCH
T ss_pred             cccccch
Confidence            8887643

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.09  E-value=1e-10  Score=102.02  Aligned_cols=72  Identities=15%  Similarity=0.106  Sum_probs=60.3

Q ss_pred             ccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            8 SRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         8 ~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ..|||++++.  ++++|+++|++||+|.+|++.+   +..+++|||+|.+.++|.+|++.++ ..         +.|++|
T Consensus       110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~---------~~Gr~l  179 (193)
T 2voo_A          110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QK---------YKETDL  179 (193)
T ss_dssp             TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CE---------ETTEEC
T ss_pred             CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-Ce---------ECCEEE
Confidence            4689988884  4899999999999999998876   3356789999999999999997654 45         479999


Q ss_pred             EEeeccC
Q 019494           83 RITYSAH   89 (340)
Q Consensus        83 ~v~~s~~   89 (340)
                      +|.+++.
T Consensus       180 ~V~~~~~  186 (193)
T 2voo_A          180 LILFKDD  186 (193)
T ss_dssp             EEEETTT
T ss_pred             EEEEhHH
Confidence            9998663

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=4.3e-10  Score=85.04  Aligned_cols=76  Identities=18%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             CCCcEEEEEeecC-C-CCCCH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494          133 PESNVLLASIENM-Q-YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC  206 (340)
Q Consensus       133 ~~s~vl~v~v~nl-~-~~vt~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~  206 (340)
                      |+.-+++|.+.+- + .+.-+    .+|.+.|++||+|..+++...+    +||+|.|.++|.+|++ |||..+.|+   
T Consensus         5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr---   76 (91)
T 2dnr_A            5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR---   76 (91)
T ss_dssp             CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE---
T ss_pred             CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe---
Confidence            4566777766542 1 12333    5789999999999999998743    9999999999999998 999999999   


Q ss_pred             EEEEEeecCC
Q 019494          207 KLHISYSRHT  216 (340)
Q Consensus       207 ~l~v~~ak~~  216 (340)
                      .|+|+++++.
T Consensus        77 ~LkV~lkt~d   86 (91)
T 2dnr_A           77 TITIALKSPS   86 (91)
T ss_dssp             EEEEEECCCS
T ss_pred             EEEEEeCCCC
Confidence            9999986643

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.09  E-value=4.7e-11  Score=96.36  Aligned_cols=74  Identities=14%  Similarity=0.118  Sum_probs=58.7

Q ss_pred             cccCCCC----C--CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCC----HHH----HHHHHH--HhcCCCC
Q 019494            9 RKYLQWQ----L--SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSD----TET----ASSAKN--ALDGRSI   68 (340)
Q Consensus         9 ~~~l~~~----~--~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~----~e~----A~~Ai~--~lng~~i   68 (340)
                      .||++++    +  ++|++|+++|+.||+|.++.++.    +.+++||||+|.|    .++    |.+|+.  .|||..|
T Consensus         4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I   83 (136)
T 2j8a_A            4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFI   83 (136)
T ss_dssp             EEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence            5677666    4  34899999999999999998876    3467889999996    433    889988  7899885


Q ss_pred             CccCCCCCCCCceEEEeeccCCc
Q 019494           69 PRYLLPENMGPCTLRITYSAHTD   91 (340)
Q Consensus        69 ~~~~~~~~~~~~~l~v~~s~~~~   91 (340)
                               .|++|+|.+-+...
T Consensus        84 ---------~Gr~irV~ln~~g~   97 (136)
T 2j8a_A           84 ---------MGFKFEVILNKHSI   97 (136)
T ss_dssp             ---------TTEEEEEEECCTTH
T ss_pred             ---------cCcEEEEEECcccH
Confidence                     69999999877553

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.99  E-value=2e-09  Score=86.37  Aligned_cols=74  Identities=12%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             CCCcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCC-hHHHHHHHHHhc--CCeeCCCCccEE
Q 019494          133 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD-VQTAVVAKEALE--GHCIYDGGFCKL  208 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~-~~~A~~A~~~ln--g~~i~~~~~~~l  208 (340)
                      +.+.+|+  |.||++. +|+++|+++|+.||+|..|.+.....  .|||+|.+ .++|.+|++.||  |..|.+.   .+
T Consensus        16 ~~G~il~--v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~---~~   88 (121)
T 1owx_A           16 KIGCLLK--FSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK---EV   88 (121)
T ss_dssp             CCCCEEE--EEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS---SE
T ss_pred             cCCeEEE--EecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc---EE
Confidence            3466766  8899999 99999999999999999999987765  69999999 899999999995  6677776   67


Q ss_pred             EEEee
Q 019494          209 HISYS  213 (340)
Q Consensus       209 ~v~~a  213 (340)
                      +++..
T Consensus        89 ~~evL   93 (121)
T 1owx_A           89 TWEVL   93 (121)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            76654

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.5e-09  Score=82.06  Aligned_cols=57  Identities=25%  Similarity=0.340  Sum_probs=50.7

Q ss_pred             HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      .+|.+.|++||+|..+++...    .+||+|.+.++|.+|++ |||..+         .|+.|+|++++..
T Consensus        30 ~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v---------~Gr~LkV~lkt~d   86 (91)
T 2dnr_A           30 DELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKEL---------LNRTITIALKSPS   86 (91)
T ss_dssp             HHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEE---------TTEEEEEEECCCS
T ss_pred             HHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEe---------CCeEEEEEeCCCC
Confidence            679999999999999998863    29999999999999998 999984         7999999987643

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.87  E-value=4.5e-09  Score=79.85  Aligned_cols=73  Identities=14%  Similarity=0.255  Sum_probs=57.9

Q ss_pred             CCCCcEEEEEeecCC---CCCCH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCC
Q 019494          132 EPESNVLLASIENMQ---YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG  204 (340)
Q Consensus       132 ~~~s~vl~v~v~nl~---~~vt~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~  204 (340)
                      .|+.-+++|.+.+-.   .+.-+    .+|.+.|+.||+|+.|++...    .+||+|.|.++|.+|++ |||.++.|+ 
T Consensus        12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~Gr-   85 (95)
T 1ufw_A           12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKGR-   85 (95)
T ss_dssp             CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETTE-
T ss_pred             CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCCe-
Confidence            356667776654311   11222    468899999999999999865    39999999999999998 999999999 


Q ss_pred             ccEEEEEe
Q 019494          205 FCKLHISY  212 (340)
Q Consensus       205 ~~~l~v~~  212 (340)
                        .|+|++
T Consensus        86 --~L~V~~   91 (95)
T 1ufw_A           86 --AVKISG   91 (95)
T ss_dssp             --EEEEEC
T ss_pred             --EEEEec
Confidence              999986

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.79  E-value=1.9e-08  Score=78.03  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHccc-----CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAF-----GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~f-----G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .+++.  +.|+|+.|++..++.+.+.+     |.|++|.+.++..|  |+|+|.|...|.+|...|||.+|.|+   +|+
T Consensus        21 ~rtia--L~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G--Aivef~d~~~AgKasLaL~G~ef~gr---~Lr   93 (117)
T 2l9w_A           21 ETLIC--LFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG--AIIIFRDSKFAAKMLMILNGSQFQGK---VIR   93 (117)
T ss_dssp             TSCEE--EECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE--EEEECSCHHHHHHHHHHHSSEEETTE---EEE
T ss_pred             CcEEE--EecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc--eEEEEccchhhHHHHhhcCCeeecCe---EEE
Confidence            34555  77999999999999999999     99999999988863  99999999999999999999999998   999


Q ss_pred             EEe
Q 019494          210 ISY  212 (340)
Q Consensus       210 v~~  212 (340)
                      |.-
T Consensus        94 ~gT   96 (117)
T 2l9w_A           94 SGT   96 (117)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            873

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.74  E-value=2e-08  Score=88.81  Aligned_cols=63  Identities=21%  Similarity=0.300  Sum_probs=55.6

Q ss_pred             HHHHHHhhcccCceeEEEEeee--------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           19 SGERAHVFSAFGFVHKITTFEK--------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~--------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      ++||++.|++||+|.+|.+.+.        ..++++||+|.+.++|.+|++.|||+.+         .||+|+++|+...
T Consensus       143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~---------~gr~i~~~~~~~~  213 (222)
T 3dxb_A          143 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---------AGRKVVAEVYDQE  213 (222)
T ss_dssp             HHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS---------SSSBCEEEECCHH
T ss_pred             HHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE---------CCeEEEEEEcCHH
Confidence            7899999999999999988752        3457899999999999999999999984         7999999998744

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.71  E-value=1.1e-08  Score=77.80  Aligned_cols=54  Identities=20%  Similarity=0.340  Sum_probs=48.3

Q ss_pred             HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494           20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS   87 (340)
Q Consensus        20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s   87 (340)
                      .+|.+.|+.||+|..|++....    +||+|.+.++|.+||+ |||..|         .|+.|+|++.
T Consensus        39 ~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v---------~Gr~L~V~~k   92 (95)
T 1ufw_A           39 TELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKV---------KGRAVKISGP   92 (95)
T ss_dssp             HHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEE---------TTEEEEEECC
T ss_pred             HHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeee---------CCeEEEEecc
Confidence            5699999999999999987632    9999999999999998 999995         7999999874

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.64  E-value=3.5e-08  Score=87.32  Aligned_cols=65  Identities=12%  Similarity=0.136  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHcccCCeeEEEEEcC---------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494          149 VTLDVLHMVFSAFGPVQKIAMFDK---------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       149 vt~~~L~~~F~~fG~v~~v~i~~~---------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      -.+++|++.|++||+|.+|+|.+.         .+|+ +||+|.+.++|.+|++.|||..+.|+   .|+++|+...+
T Consensus       141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~-~fv~f~~~~~a~~a~~~l~gr~~~gr---~i~~~~~~~~~  214 (222)
T 3dxb_A          141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRWFAGR---KVVAEVYDQER  214 (222)
T ss_dssp             THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEEEECCHHH
T ss_pred             HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeE-EEEEECCHHHHHHHHHHhcCceECCe---EEEEEEcCHHH
Confidence            346789999999999999998632         2365 99999999999999999999999999   99999987554

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.51  E-value=3e-07  Score=73.66  Aligned_cols=74  Identities=9%  Similarity=0.092  Sum_probs=55.9

Q ss_pred             ccccccCCCCC---CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCC-HHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQL---SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSD-TETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~-~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +-+.||++++.   +++++|+++|+.||+|..|.+.+...  .|||+|.+ .++|.+|++.||.-.+-       +.+..
T Consensus        17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~-------i~g~~   87 (121)
T 1owx_A           17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQ-------LRNKE   87 (121)
T ss_dssp             CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBC-------TTSSS
T ss_pred             CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcE-------EeCcE
Confidence            34456665443   44899999999999999999877432  49999999 89999999999633321       56777


Q ss_pred             EEEeecc
Q 019494           82 LRITYSA   88 (340)
Q Consensus        82 l~v~~s~   88 (340)
                      ++++...
T Consensus        88 ~~~evL~   94 (121)
T 1owx_A           88 VTWEVLE   94 (121)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            7777654

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=97.89  E-value=1.5e-05  Score=61.83  Aligned_cols=64  Identities=17%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             cCCCCCCCHHHHHHhhccc-----CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494           11 YLQWQLSASGERAHVFSAF-----GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus        11 ~l~~~~~~ee~L~~lF~~f-----G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      .|+-..+ .+.|+.|.+++     |.|.+|.+.... ++ |+|+|.|...|-+|.-.|+|.+|         .|++|+|.
T Consensus        28 ~ipDtvn-darIr~lve~~~~i~~g~i~KI~L~pDH-~G-Aivef~d~~~AgKasLaL~G~ef---------~gr~Lr~g   95 (117)
T 2l9w_A           28 PLSDKVS-PSLICQFLQEEIHINEKDIRKILLVSDF-NG-AIIIFRDSKFAAKMLMILNGSQF---------QGKVIRSG   95 (117)
T ss_dssp             CCCTTCC-HHHHHHHHHHHTCCCTTTCSEEEEETTT-TE-EEEECSCHHHHHHHHHHHSSEEE---------TTEEEEEE
T ss_pred             cCCCCCC-HHHHHHHHhhhhccCccceeEEEEecCC-Cc-eEEEEccchhhHHHHhhcCCeee---------cCeEEEec
Confidence            4454445 48999999999     999999987754 34 99999999999999999999996         59999997


Q ss_pred             e
Q 019494           86 Y   86 (340)
Q Consensus        86 ~   86 (340)
                      -
T Consensus        96 T   96 (117)
T 2l9w_A           96 T   96 (117)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.83  E-value=3.7e-05  Score=59.29  Aligned_cols=74  Identities=11%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             EEEEEeecCCCCC-CH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          137 VLLASIENMQYAV-TL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       137 vl~v~v~nl~~~v-t~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      .|+  |.||+.+| +.    +.++++|..|+++.....++.=+  ..-|.|.+.++|.+|...|+++.+.|+   .|+|-
T Consensus         7 tLi--itnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~---~~r~Y   79 (104)
T 1wey_A            7 GLI--ACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK---EMKLY   79 (104)
T ss_dssp             EEE--EECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE---ECEEE
T ss_pred             eEE--EecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc---eeEEE
Confidence            455  66887655 32    56789999999999988887665  599999999999999999999999999   99999


Q ss_pred             eecCCC
Q 019494          212 YSRHTD  217 (340)
Q Consensus       212 ~ak~~~  217 (340)
                      |+.+..
T Consensus        80 Fgq~~~   85 (104)
T 1wey_A           80 FAQTLH   85 (104)
T ss_dssp             CCCCSS
T ss_pred             ecCCCC
Confidence            998554

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.30  E-value=0.0011  Score=50.87  Aligned_cols=67  Identities=15%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcc-----cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSA-----FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~-----fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .+++.  |.|+|..+++|.|.-.|++     =|+|+.|..+.  .  .|+|+|.|.+.|++.++. ..+.|.+.   .|.
T Consensus         8 ~~~I~--V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~--~AvItF~d~~va~rVL~k-~~H~L~~~---~Ls   77 (104)
T 2dhx_A            8 GVAVE--VRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C--GGVLTFREPADAERVLAQ-ADHELHGA---QLS   77 (104)
T ss_dssp             CCEEE--EESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T--EEEEEESSHHHHHHHHTC-SCCBSSSS---BCE
T ss_pred             ccEEE--EECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C--cEEEEEcChHHHHHHhcC-CcceecCe---EEE
Confidence            44555  8899999999999999988     35999998877  2  599999999999998864 24566665   677


Q ss_pred             EE
Q 019494          210 IS  211 (340)
Q Consensus       210 v~  211 (340)
                      |.
T Consensus        78 V~   79 (104)
T 2dhx_A           78 LR   79 (104)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=97.26  E-value=0.00093  Score=52.81  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=48.7

Q ss_pred             EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          139 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       139 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      +|+|.+.+... .+.+.+.|++||+|++..... ... .-.|.|+++.+|++||.. ||..|.+.
T Consensus        26 wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-~~N-WihI~Y~s~~~A~rAL~k-NG~ii~g~   86 (119)
T 1wwh_A           26 WVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-TGN-WMHIRYQSKLQARKALSK-DGRIFGES   86 (119)
T ss_dssp             EEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-SSS-EEEEEESSHHHHHHHHTT-TTCEETTT
T ss_pred             EEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-CCC-eEEEEeCCHHHHHHHHHh-CCeEecCC
Confidence            46688887664 567788899999999987733 223 599999999999999975 99988764

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.12  E-value=0.00069  Score=52.15  Aligned_cols=61  Identities=11%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCc
Q 019494           20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD   91 (340)
Q Consensus        20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~   91 (340)
                      +.++++|..|+++.....++.-+  -..|.|.+.|+|.+|...|++..+         .|+.++|-|++...
T Consensus        25 ~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f---------~g~~~r~YFgq~~~   85 (104)
T 1wey_A           25 AKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEF---------LGKEMKLYFAQTLH   85 (104)
T ss_dssp             HHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEE---------TTEECEEECCCCSS
T ss_pred             HHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhcccee---------cCceeEEEecCCCC
Confidence            67899999999999988887322  399999999999999999999985         69999999998553

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=96.70  E-value=0.012  Score=44.31  Aligned_cols=75  Identities=12%  Similarity=0.260  Sum_probs=56.2

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC------CeEEEEEcCChHHHHHHHHHhcCCeeCCC-C-ccEEEEE
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG------GLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKLHIS  211 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~------g~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~~l~v~  211 (340)
                      |.|.+||+++|+|++.+.++...++.-......+.      -..|+|.|.+.+++..-.+.++|+.+.+. | ...-.|+
T Consensus         4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE   83 (91)
T 1uw4_A            4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVE   83 (91)
T ss_dssp             EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEE
T ss_pred             EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEE
Confidence            44899999999999999999998876655543221      12499999999999999999999977543 2 2233456


Q ss_pred             eec
Q 019494          212 YSR  214 (340)
Q Consensus       212 ~ak  214 (340)
                      ||-
T Consensus        84 ~AP   86 (91)
T 1uw4_A           84 FAP   86 (91)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            553

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=96.57  E-value=0.0075  Score=45.73  Aligned_cols=55  Identities=24%  Similarity=0.362  Sum_probs=44.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE  196 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln  196 (340)
                      ..|++  + +.|.+....||.++|+.||.|. |+-..+.   .|||.|.+++.|..|+..+.
T Consensus        16 ~HVf~--l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           16 DHVLH--V-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             CSEEE--E-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred             CeEEE--E-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence            45555  5 8999999999999999999543 4433332   59999999999999999875

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=96.36  E-value=0.0021  Score=62.55  Aligned_cols=54  Identities=15%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHH
Q 019494          136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE  193 (340)
Q Consensus       136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~  193 (340)
                      +.++|.   .+..+++.+|.+.|++||.|.++.+...+ |.+|.|||.+.+++..++.
T Consensus        54 rsv~v~---~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~  107 (464)
T 3pq1_A           54 RTVLIH---CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN  107 (464)
T ss_dssp             TEEEEE---ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred             ceEEEE---cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence            345543   46789999999999999999999888755 5679999999999997754

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=96.31  E-value=0.0076  Score=45.80  Aligned_cols=51  Identities=20%  Similarity=0.283  Sum_probs=41.6

Q ss_pred             cCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494          144 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH  198 (340)
Q Consensus       144 nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~  198 (340)
                      +.|.+....||.++|+.||.| .|+-..+.   .|||.|.+++.|..|+..+...
T Consensus        12 ~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~~~   62 (101)
T 3ctr_A           12 TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSKYA   62 (101)
T ss_dssp             ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHTTC
T ss_pred             eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcccC
Confidence            899999999999999999943 34433332   5999999999999999988643

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=96.08  E-value=0.0075  Score=45.73  Aligned_cols=42  Identities=26%  Similarity=0.277  Sum_probs=33.3

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD   64 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln   64 (340)
                      -+||.++|+.||-|.---+.   +. .|||.|.+.+.|..|++.++
T Consensus        29 t~DI~~lFs~fggv~I~Wid---DT-sAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           29 TSDLYQLFSAFGNIQISWID---DT-SAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             HHHHHHHHTTTCSCCCEEEE---TT-EEEEECSCHHHHHHHHHHHH
T ss_pred             hHHHHHHhhccCCEEEEEEc---CC-eEEEEecCHHHHHHHHHhcc
Confidence            58999999999965433332   22 49999999999999999775

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=95.83  E-value=0.013  Score=46.13  Aligned_cols=53  Identities=17%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494           13 QWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI   68 (340)
Q Consensus        13 ~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i   68 (340)
                      ++-+.+-+.+.+.|++||+|.+....  ..++.-.|+|.+..+|++||. .||+.|
T Consensus        31 GFp~~~~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL~-kNG~ii   83 (119)
T 1wwh_A           31 GFPQASASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKALS-KDGRIF   83 (119)
T ss_dssp             CCCGGGHHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred             CCCHHHHHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHHH-hCCeEe
Confidence            34444456788999999999999863  356789999999999999996 588775

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=95.69  E-value=0.0074  Score=45.89  Aligned_cols=42  Identities=26%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD   64 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln   64 (340)
                      -.||.++|+.||-|.---+.   +. .|||.|.+.+.|..|+..+.
T Consensus        19 t~Di~~lFs~fggv~I~Wid---DT-sAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A           19 TSDLYQLFSAFGNIQISWID---DT-SAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             HHHHHHHTTTSEEEEEEEEE---TT-EEEEEEEEECHHHHHHHHHT
T ss_pred             hHHHHHHHhccCCEEEEEEc---CC-eEEEEecCHHHHHHHHHhcc
Confidence            58999999999943322222   23 49999999999999999876

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=95.28  E-value=0.0093  Score=47.76  Aligned_cols=69  Identities=14%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEE-EEc------------C------CCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFD------------K------NGGLQALIQYPDVQTAVVAKEALEGHCI  200 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~------------~------~~g~~afV~F~~~~~A~~A~~~lng~~i  200 (340)
                      |+|.+.|...+ ..+.+.|++||.|++-. +.+            +      ..+ ...|.|+++.+|.+||.. ||..|
T Consensus        10 VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~N-WikItYds~~~A~rAL~~-NG~ii   86 (132)
T 3p3d_A           10 ILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNS-WTKITYDNPASAVDALLE-NGAVF   86 (132)
T ss_dssp             EEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETT-EEEEEBSSHHHHHHHHTT-TTCEE
T ss_pred             EEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCc-EEEEEcCCHHHHHHHHHh-CCeEe
Confidence            55778765555 55677899999998721 111            0      112 478999999999999975 99888


Q ss_pred             CCCCccEEEEEeec
Q 019494          201 YDGGFCKLHISYSR  214 (340)
Q Consensus       201 ~~~~~~~l~v~~ak  214 (340)
                      .|.   -|=|..-+
T Consensus        87 ~G~---mIGV~Py~   97 (132)
T 3p3d_A           87 NGV---LLGVIPYT   97 (132)
T ss_dssp             TTE---ECEEEECC
T ss_pred             CcE---EEEEEECC
Confidence            663   66666543

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=95.26  E-value=0.0069  Score=59.00  Aligned_cols=42  Identities=26%  Similarity=0.417  Sum_probs=33.8

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHH
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN   61 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~   61 (340)
                      |++|.+.|++||.|.++.+.+ ..|.||.|||.++++|..++.
T Consensus        66 ~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~  107 (464)
T 3pq1_A           66 ENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQN  107 (464)
T ss_dssp             -CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHS
T ss_pred             HHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHh
Confidence            799999999999999999886 456789999999999997764

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=94.55  E-value=0.069  Score=40.48  Aligned_cols=74  Identities=12%  Similarity=0.253  Sum_probs=52.1

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-------CCeEEEEEcCChHHHHHHHHHhcCCeeCCC-C-ccEEEE
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-------GGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKLHI  210 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-------~g~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~~l~v  210 (340)
                      |.|..||+.+|++++.+.++..=++........+       -. .|+|.|.+.++...-.+..+|+.+.+. | ...-.|
T Consensus        12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~S-RAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~V   90 (97)
T 2l08_A           12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYS-RAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVV   90 (97)
T ss_dssp             EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCC-CCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcce-EEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEE
Confidence            4589999999999999888876544322222111       12 499999999999999999999977543 2 334456


Q ss_pred             Eeec
Q 019494          211 SYSR  214 (340)
Q Consensus       211 ~~ak  214 (340)
                      +||-
T Consensus        91 E~AP   94 (97)
T 2l08_A           91 EFAP   94 (97)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            6653

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.61  E-value=0.12  Score=39.57  Aligned_cols=63  Identities=10%  Similarity=0.030  Sum_probs=44.4

Q ss_pred             ccCCCCCC--CHHHHHHhhcc----c-CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494           10 KYLQWQLS--ASGERAHVFSA----F-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus        10 ~~l~~~~~--~ee~L~~lF~~----f-G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      |.+.+++.  ++|.|+-+|+.    - |+|.+|....    .-|+|+|.+.+.|++.+.. ....         +.+.+|
T Consensus        11 I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~---------L~~~~L   76 (104)
T 2dhx_A           11 VEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHE---------LHGAQL   76 (104)
T ss_dssp             EEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCB---------SSSSBC
T ss_pred             EEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-Ccce---------ecCeEE
Confidence            34555553  37889999998    2 7899998765    3499999999999998852 1222         456667


Q ss_pred             EEee
Q 019494           83 RITY   86 (340)
Q Consensus        83 ~v~~   86 (340)
                      .|.-
T Consensus        77 sV~P   80 (104)
T 2dhx_A           77 SLRP   80 (104)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7653

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=89.62  E-value=0.18  Score=40.27  Aligned_cols=66  Identities=11%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHhhcccCceeEE-EEee-------------e----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCC
Q 019494           13 QWQLSASGERAHVFSAFGFVHKI-TTFE-------------K----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLP   74 (340)
Q Consensus        13 ~~~~~~ee~L~~lF~~fG~V~~v-~~~~-------------~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~   74 (340)
                      ++-......+.+.|++||.|.+- ...+             +    ..+..-.|+|.+..+|.+|+. .||+.|      
T Consensus        14 GFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii------   86 (132)
T 3p3d_A           14 GYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF------   86 (132)
T ss_dssp             CCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE------
T ss_pred             ecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe------
Confidence            34333467788999999999872 1110             0    134567999999999999995 688875      


Q ss_pred             CCCCCceEEEeecc
Q 019494           75 ENMGPCTLRITYSA   88 (340)
Q Consensus        75 ~~~~~~~l~v~~s~   88 (340)
                         .|.-|-|....
T Consensus        87 ---~G~mIGV~Py~   97 (132)
T 3p3d_A           87 ---NGVLLGVIPYT   97 (132)
T ss_dssp             ---TTEECEEEECC
T ss_pred             ---CcEEEEEEECC
Confidence               56655565443

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=88.60  E-value=0.84  Score=34.03  Aligned_cols=58  Identities=10%  Similarity=0.115  Sum_probs=44.0

Q ss_pred             cCCCCCC--CHHHHHHhhcccCceeEEEEeeec------CCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494           11 YLQWQLS--ASGERAHVFSAFGFVHKITTFEKT------AGFQALVQFSDTETASSAKNALDGRSI   68 (340)
Q Consensus        11 ~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~------~~~~AFVeF~~~e~A~~Ai~~lng~~i   68 (340)
                      =|+.+|.  +|+++.+..+...++.-....+++      .-.-|+|.|.+.|++....+.++|..+
T Consensus         5 VIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F   70 (91)
T 1uw4_A            5 VIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF   70 (91)
T ss_dssp             EEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred             EEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence            3445553  389999999999887766665521      112299999999999999999999876

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=85.32  E-value=2.2  Score=41.89  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=44.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH  198 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~  198 (340)
                      ..+++  +. .+..+...+|.++|+.||.| .|+-+.+.   +|||.|.+.+.|..++..++..
T Consensus       440 ~~vl~--v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~~  496 (507)
T 3d45_A          440 DHVLH--VT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKYA  496 (507)
T ss_dssp             GGEEE--EE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTTC
T ss_pred             CcEEE--Ee-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHhC
Confidence            45665  44 66678889999999999954 45544433   5999999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	2e-23
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	3e-15
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	2e-04
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	0.001
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	0.001
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	0.002
d1h2vz_	93	d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro	0.003
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	d.58.7.3 (A:) 0.003

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (225), Expect = 2e-23
 Identities = 53/103 (51%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 193
           +S VL   +EN+ Y VTLDVLH +FS FG V KI  F KN   QAL+QY D  +A  AK 
Sbjct: 4   QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 63

Query: 194 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 236
           +L+G  IY+   C L I +S+ T L++K NND+SRDYT P  P
Sbjct: 64  SLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 105

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (167), Expect = 3e-15
 Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 7/87 (8%)

Query: 24  HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83
            +FS FG V KI TF K   FQAL+Q++D  +A  AK +LDG++I           CTLR
Sbjct: 26  QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLR 78

Query: 84  ITYSAHTDLSVKFQSHRSRDYTNPYLP 110
           I +S  T L+VK+ + +SRDYT P LP
Sbjct: 79  IDFSKLTSLNVKYNNDKSRDYTRPDLP 105

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ----ALIQYPDVQTAVVAKEALEG 197
           + N+   +T D L  +F  +G + +  +       +    A ++Y   + A  A  AL  
Sbjct: 11  VTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 70

Query: 198 HCIYDGGFCKLHISY 212
               +GG   L +  
Sbjct: 71  VIP-EGGSQPLSVRL 84

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 140 ASI--ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL----QALIQYPDVQTAVVAKE 193
           AS+   ++   VT  +L+  FS  GP+  I +            A + +     A  A +
Sbjct: 1   ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60

Query: 194 ALEGHCIYDGGFCKLHISYSR 214
            +    I       + I +S+
Sbjct: 61  TMNFDVIKG---KPVRIMWSQ 78

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201
              +   +T  ++   FS FG + +I +F + G   + +++   ++A  A  ++ G  I 
Sbjct: 23  CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG--YSFVRFSTHESAAHAIVSVNGTTIE 80

Query: 202 DGGFCKLHISYSR 214
                 +   + +
Sbjct: 81  G---HVVKCYWGK 90

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMF----DKNGGLQALIQYPDVQTAVVAKEALEG 197
           +  +   +T   L+ +F A GP+    +            A + +     +  A + L G
Sbjct: 7   VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG 66

Query: 198 HCIYDGGFCKLHISYSR 214
             + +    +L +SY+R
Sbjct: 67  ITVRN---KRLKVSYAR 80

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 129 KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL----IQYPD 184
           +KL  +S  L   + N+ +  T + ++ +FS  G ++KI M        A     ++Y  
Sbjct: 1   EKLLKKSCTLY--VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYS 58

Query: 185 VQTAVVAKEALEGHCIYDGGFCKLHISYSR 214
              A  A   + G  + D     +   +  
Sbjct: 59  RADAENAMRYINGTRLDD---RIIRTDWDA 85

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGH 198
           ++        +V   +   +G V+++ + D  G        +++   + A  A   L   
Sbjct: 32  MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91

Query: 199 CIYDGGFCKLHISYS 213
                    +H   S
Sbjct: 92  WFNG---QPIHAELS 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.92
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.89
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.82
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.77
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.76
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.71
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.7
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.69
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.69
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.69
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.69
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.69
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.69
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.68
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.68
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.68
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.67
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.67
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.67
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.67
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.66
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.66
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.66
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.66
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.66
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.66
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.65
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.65
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.65
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.65
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.65
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.65
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.65
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.65
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.64
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.64
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.64
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.64
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.64
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.63
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.63
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.63
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.63
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.63
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.62
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.62
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.62
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.62
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.62
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.62
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.61
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.61
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.61
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.61
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.61
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.61
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.61
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.61
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.61
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.61
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.61
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.6
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.6
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.6
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.6
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.6
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.6
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.59
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.59
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.59
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.59
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.59
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.59
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.59
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.59
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.59
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.58
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.58
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.58
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.57
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.57
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.57
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.57
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.57
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.57
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.57
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.57
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.57
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.57
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.56
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.56
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.56
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.55
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.55
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.55
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.55
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.55
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.54
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.54
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.54
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.54
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.54
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.53
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.53
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.52
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.52
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.52
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.52
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.52
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.52
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.52
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.52
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.52
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.52
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.51
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.51
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.51
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.51
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.51
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.51
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.51
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.51
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.51
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.5
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.5
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.49
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.48
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.48
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.48
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.48
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.48
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.48
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.47
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.47
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.47
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.46
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.46
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.45
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.45
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.45
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.44
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.44
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.44
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.43
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.43
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.42
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.42
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.41
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.41
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.4
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.38
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.37
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.37
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.36
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.34
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.33
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.33
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.31
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.29
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.28
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.26
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.24
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.24
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.23
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.23
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.16
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.13
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.09
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.08
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.01
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	97.99
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.73
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	97.42
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.27
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	96.6
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	93.49
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	90.78
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	89.22

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.3e-25  Score=187.69  Aligned_cols=161  Identities=11%  Similarity=0.149  Sum_probs=125.3

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      .+.+|||++++.  +|++|+++|++||+|.++.+++    +.++++|||+|.+.++|.+|+..+++.          +..
T Consensus         5 ~~r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~----------~~~   74 (183)
T d1u1qa_           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK----------VDG   74 (183)
T ss_dssp             HHHEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCE----------ETT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCc----------ccc
Confidence            357899999985  4999999999999999998875    345678999999999999999755443          246


Q ss_pred             ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494           80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS  159 (340)
Q Consensus        80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~  159 (340)
                      +.+.+............                                 ......+.|+  |.||+..+|+++|+++|+
T Consensus        75 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~i~--V~~lp~~~te~~L~~~f~  119 (183)
T d1u1qa_          75 RVVEPKRAVSREDSQRP---------------------------------GAHLTVKKIF--VGGIKEDTEEHHLRDYFE  119 (183)
T ss_dssp             EECEEEECCCTTGGGST---------------------------------TTTCCCSEEE--EECCCTTCCHHHHHHHHG
T ss_pred             cchhhhhhhhccccccc---------------------------------ccccccceeE--EccCCCcCCHHHHhhhhc
Confidence            66666654432211100                                 0011245666  899999999999999999


Q ss_pred             ccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          160 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       160 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      .||.|..+.+..+.     +|+ |||+|.+.++|.+|++ +++..|.|+   .|+|.+|.++
T Consensus       120 ~~G~v~~~~i~~~~~~~~~~g~-~fV~f~~~e~A~~Al~-~~~~~~~G~---~i~V~~A~~k  176 (183)
T d1u1qa_         120 QYGKIEVIEIMTDRGSGKKRGF-AFVTFDDHDSVDKIVI-QKYHTVNGH---NCEVRKALSK  176 (183)
T ss_dssp             GGSCEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHT-SSCEEETTE---EEEEEECCCH
T ss_pred             cCCceeeeeeecccccCcccee-EEEEECCHHHHHHHHH-hCCCeECCE---EEEEEecCCc
Confidence            99999999887532     344 9999999999999997 799999998   9999998654

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=164.69  Aligned_cols=103  Identities=51%  Similarity=0.756  Sum_probs=94.0

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      ++.++.|+|+||++++|+++|+++|++||.|++|+|+.++ +| +|||+|++.++|.+|++.|||..|+++ ++.|+|.|
T Consensus         4 ~s~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~~~~g-~aFV~f~~~e~A~~Ai~~ln~~~l~~~-~~~l~v~~   81 (108)
T d2adba1           4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQF-QALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRIDF   81 (108)
T ss_dssp             CCCEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEETTEE-EEEEEESCHHHHHHHHHHHHSCCSSTT-CCCCEEEE
T ss_pred             CCCeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEeeCCCC-eEEEEECCHHHHHHHHHHHCCCEeccC-CcEEEEEe
Confidence            5889999999999999999999999999999999987654 45 499999999999999999999999865 56999999


Q ss_pred             ecCCCCccccCCCCCCCCCCCCCCCC
Q 019494          213 SRHTDLSIKVNNDRSRDYTLPSTPMV  238 (340)
Q Consensus       213 ak~~~~~~~~~~~~~~d~~~p~~p~~  238 (340)
                      ++++.+.++.+++++|||++|.+|.+
T Consensus        82 s~~~~~~~~~~~~~~rDy~~p~~p~g  107 (108)
T d2adba1          82 SKLTSLNVKYNNDKSRDYTRPDLPSG  107 (108)
T ss_dssp             CSSCSCCCCCTTTTEEESSSSSCCCS
T ss_pred             cCCccccccccCccCCcCCCCCCCCC
Confidence            99999999999999999999988754

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=146.56  Aligned_cols=100  Identities=43%  Similarity=0.623  Sum_probs=89.8

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+..||||+|++-+  |++|+++|++||.|.+|.+++++++++|||+|.+.|+|++|++.|||..|+       ..+++|
T Consensus         5 s~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~-------~~~~~l   77 (108)
T d2adba1           5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTL   77 (108)
T ss_dssp             CCEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHSCCSS-------TTCCCC
T ss_pred             CCeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHHHCCCEec-------cCCcEE
Confidence            46778999999854  899999999999999999988777789999999999999999999999986       578999


Q ss_pred             EEeeccCCcccccccCcCCcCCCCCCCCC
Q 019494           83 RITYSAHTDLSVKFQSHRSRDYTNPYLPV  111 (340)
Q Consensus        83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~  111 (340)
                      +|.||+.+.+.++.+.+++|||++|.++.
T Consensus        78 ~v~~s~~~~~~~~~~~~~~rDy~~p~~p~  106 (108)
T d2adba1          78 RIDFSKLTSLNVKYNNDKSRDYTRPDLPS  106 (108)
T ss_dssp             EEEECSSCSCCCCCTTTTEEESSSSSCCC
T ss_pred             EEEecCCccccccccCccCCcCCCCCCCC
Confidence            99999999888888888899999987754

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.77  E-value=1.2e-18  Score=129.97  Aligned_cols=79  Identities=20%  Similarity=0.430  Sum_probs=71.8

Q ss_pred             CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          132 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       132 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      .+|+++|+  |+||+.++|+++|+++|++||.|++|++.++++|+ |||+|.|.++|.+|++.|||+.|.++  +.|+|+
T Consensus         5 ~pP~~tl~--V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~--~~i~v~   79 (83)
T d2b0ga1           5 QPPNQILF--LTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDI-AFVEFTTELQSNAAKEALQGFKITPT--HAMKIT   79 (83)
T ss_dssp             CSCCSEEE--EESCCTTCCHHHHHHHHTTSTTEEEEEECTTTCSC-EEEEESSHHHHHHHHHHHTTCBSSTT--CBCEEE
T ss_pred             CCCCCEEE--EECCCCCCCHHHHHhhhccCccEEEeeeeccccee-EEEecCCHHHHHHHHHHhCCcEeCCC--cEEEEE
Confidence            46788988  89999999999999999999999999999888886 99999999999999999999999653  289999


Q ss_pred             eecC
Q 019494          212 YSRH  215 (340)
Q Consensus       212 ~ak~  215 (340)
                      |||.
T Consensus        80 ~akk   83 (83)
T d2b0ga1          80 FAKK   83 (83)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            9973

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2e-18  Score=135.23  Aligned_cols=81  Identities=28%  Similarity=0.479  Sum_probs=73.0

Q ss_pred             CcEEEEEeecCC-CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          135 SNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       135 s~vl~v~v~nl~-~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++||+  |.||+ +.+|+++|+++|++||+|++|+|..+++|+ |||+|++.++|.+|++.|||..|.|+   .|+|+|+
T Consensus         2 ~~~l~--V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~kg~-afV~f~~~~~A~~ai~~lng~~l~g~---~l~v~~s   75 (109)
T d2adca1           2 NSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLS   75 (109)
T ss_dssp             CSEEE--EESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCC-EEEEESCHHHHHHHHHHHTTCBCSSS---BCEEECC
T ss_pred             CCEEE--EeCCCcccCCHHHHHHHHhhccccceEEEEecccce-EEEEECCHHHHHHHHHHhCCCEECCE---EEEEEEC
Confidence            56878  88995 569999999999999999999999888886 99999999999999999999999999   9999999


Q ss_pred             cCCCCccc
Q 019494          214 RHTDLSIK  221 (340)
Q Consensus       214 k~~~~~~~  221 (340)
                      +.......
T Consensus        76 ~~~~~~~~   83 (109)
T d2adca1          76 KHQNVQLP   83 (109)
T ss_dssp             SCCCCCCC
T ss_pred             CCCCCCCC
Confidence            87765443

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=124.97  Aligned_cols=79  Identities=34%  Similarity=0.382  Sum_probs=69.8

Q ss_pred             CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-CCCCeEEEEEcCChHHHHHHHHHhcCCeeC-CCCccEEE
Q 019494          132 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLH  209 (340)
Q Consensus       132 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-~~~g~~afV~F~~~~~A~~A~~~lng~~i~-~~~~~~l~  209 (340)
                      .||+++|+  |+||+.++|+++|+++|++||.|.++++.. +++|+ |||+|++.++|.+|+..|||..|. |+   .|+
T Consensus         7 ~pPs~tL~--V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~-afV~f~~~~~A~~A~~~l~~~~i~~g~---~l~   80 (88)
T d2adca2           7 FPPSATLH--LSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLR   80 (88)
T ss_dssp             CCSCSEEE--EECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTC-EEEEESSHHHHHHHHHHHTTCBSSSSC---BCE
T ss_pred             CCCCCEEE--EECCCCCCCHHHHHHHhhccCCEEEEEEeeecccce-eEEEECCHHHHHHHHHhccCCEecCCC---EEE
Confidence            35788988  889999999999999999999999987654 44565 999999999999999999999995 56   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |+|||.+
T Consensus        81 v~~sk~~   87 (88)
T d2adca2          81 VSFSKST   87 (88)
T ss_dssp             EEECSSC
T ss_pred             EEeCCCC
Confidence            9999864

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-17  Score=126.43  Aligned_cols=76  Identities=16%  Similarity=0.357  Sum_probs=69.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      .+++|+  |+||+..+|+++|+++|++||.|++|+|.+.+ | +|||+|.+.++|.+|++.|||..|.|+   .|+|+|+
T Consensus        17 ~~~~l~--v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~k-g-~afV~f~~~~~A~~Ai~~l~~~~i~g~---~l~v~~a   89 (96)
T d1x4ga1          17 KNCTVY--CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-G-YSFVRFSTHESAAHAIVSVNGTTIEGH---VVKCYWG   89 (96)
T ss_dssp             SCCEEE--EECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHTTCEETTE---ECEEECC
T ss_pred             CCCEEE--EcCCCCCCCHHHHHHHHHHhCCceEEEEEecc-e-EEEEEECCHHHHHHHHHHhCCCEECCE---EEEEEEc
Confidence            355666  89999999999999999999999999998765 5 599999999999999999999999998   9999998


Q ss_pred             cCC
Q 019494          214 RHT  216 (340)
Q Consensus       214 k~~  216 (340)
                      |.+
T Consensus        90 k~~   92 (96)
T d1x4ga1          90 KES   92 (96)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=8.6e-17  Score=124.86  Aligned_cols=82  Identities=17%  Similarity=0.212  Sum_probs=71.5

Q ss_pred             CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC--CeeCCCCccEEE
Q 019494          132 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLH  209 (340)
Q Consensus       132 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng--~~i~~~~~~~l~  209 (340)
                      .+++++|+  |.||+..+|+++|+++|++||.|++|++.+.+ + +|||+|++.++|.+|++.|++  ..+.++   .|+
T Consensus        12 ~~ps~~l~--v~nlp~~~te~~l~~~F~~fG~I~~~~~~~~k-~-~AfV~f~~~e~A~~ai~~~~~~~~~~~g~---~l~   84 (104)
T d1wexa_          12 VSVSPVVH--VRGLCESVVEADLVEALEKFGTICYVMMMPFK-R-QALVEFENIDSAKECVTFAADVPVYIAGQ---QAF   84 (104)
T ss_dssp             CCCCSEEE--EESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHHHSCCBSSSS---BCE
T ss_pred             CCCCCEEE--EeCCCCCCCHHHHHHhhhhcccceEEEEEecc-e-eEEEEeCCHHHHHHHHHHHcCCCcEEeeE---EEE
Confidence            35688988  88999999999999999999999999998766 4 599999999999999998854  456677   999


Q ss_pred             EEeecCCCCcc
Q 019494          210 ISYSRHTDLSI  220 (340)
Q Consensus       210 v~~ak~~~~~~  220 (340)
                      |.|++.+....
T Consensus        85 v~~s~~~~~~~   95 (104)
T d1wexa_          85 FNYSTSKRITR   95 (104)
T ss_dssp             EEECSSSSCCC
T ss_pred             EEEcCCCccCC
Confidence            99998876654

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3.3e-17  Score=125.61  Aligned_cols=79  Identities=19%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +++++|+  |.||++++|+++|+++|++||.|++|++.+++ + +|||+|.+.++|.+|++.|||..|.+. .+.|+|+|
T Consensus        15 ~Ps~tl~--V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~-~afV~f~~~~~A~~A~~~l~~~~i~g~-~~~l~v~~   89 (97)
T d1whya_          15 NPTTRLW--VGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-S-FAYIQYESLDAAQAACAKMRGFPLGGP-DRRLRVDF   89 (97)
T ss_dssp             CCCSCEE--EECCCSSCCHHHHHHHHHTTSCEEEEEECSSS-C-CEEEEESSHHHHHHHHHHHTTCBCSSS-SCBCEEEE
T ss_pred             CCCCEEE--EcCCCCCCCHHHHHHHHHhhcccceEeeeccc-c-EEEeccCCHHHHHHHHHHhCCCEeCCC-ceEEEEEe
Confidence            4677877  88999999999999999999999999998765 4 599999999999999999999999875 46899999


Q ss_pred             ecCC
Q 019494          213 SRHT  216 (340)
Q Consensus       213 ak~~  216 (340)
                      |+..
T Consensus        90 ak~~   93 (97)
T d1whya_          90 AKSG   93 (97)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9864

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.8e-17  Score=121.94  Aligned_cols=73  Identities=18%  Similarity=0.359  Sum_probs=65.8

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|+|||.++|+++|+++|++||+|++|++....     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+||+
T Consensus         5 l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~Ak   80 (82)
T d1fxla1           5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY-GFVNYIDPKDAEKAINTLNGLRLQTK---TIKVSYAR   80 (82)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceee-EEEEECCHHHHHHHHHHhCCCEECCE---EEEEEEee
Confidence            4499999999999999999999999999987432     344 99999999999999999999999998   99999998


Q ss_pred             CC
Q 019494          215 HT  216 (340)
Q Consensus       215 ~~  216 (340)
                      +.
T Consensus        81 Ps   82 (82)
T d1fxla1          81 PS   82 (82)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.69  E-value=2.9e-17  Score=121.87  Aligned_cols=75  Identities=21%  Similarity=0.396  Sum_probs=66.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+|||.++|+++|+++|++||.|++|++...+     +|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus         2 ~t~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~ai~~lng~~~~g~---~l~   75 (82)
T d1b7fa1           2 NTNLI--VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGY-AFVDFTSEMDSQRAIKVLNGITVRNK---RLK   75 (82)
T ss_dssp             CSEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCcccc-ceEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence            34555  89999999999999999999999999976422     455 99999999999999999999999998   999


Q ss_pred             EEeecC
Q 019494          210 ISYSRH  215 (340)
Q Consensus       210 v~~ak~  215 (340)
                      |+||++
T Consensus        76 v~~a~p   81 (82)
T d1b7fa1          76 VSYARP   81 (82)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999975

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-17  Score=124.11  Aligned_cols=78  Identities=19%  Similarity=0.391  Sum_probs=69.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+.++|+++|+++|++||+|++|+|..     ..+|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus         5 ~~tlf--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~-afV~f~~~~~A~~ai~~l~~~~i~g~---~l~   78 (89)
T d2cqba1           5 KRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---TIR   78 (89)
T ss_dssp             CSCEE--EESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSE-EEECCSSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred             CcEEE--EeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccce-eEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence            56666  999999999999999999999999999864     23565 99999999999999999999999998   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |+||++...
T Consensus        79 v~~a~p~~~   87 (89)
T d2cqba1          79 VNLAKPMRI   87 (89)
T ss_dssp             EEECCCCCC
T ss_pred             EEEeCCCCC
Confidence            999987643

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-17  Score=121.90  Aligned_cols=78  Identities=19%  Similarity=0.390  Sum_probs=69.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +.++|+  |+||+.++|+++|+++|+.||.|++|+|..+   ++|+ |||+|.+.++|.+|++.|||..|.|+   .|+|
T Consensus         7 ~~~tl~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~-afV~f~~~~~A~~A~~~l~~~~~~g~---~i~v   80 (90)
T d2cqia1           7 QPRTLY--VGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY-CFVEFYEHRDAAAALAAMNGRKILGK---EVKV   80 (90)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEE
T ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHhcCCceeeeeecccCcccee-eEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence            356666  9999999999999999999999999998643   3465 99999999999999999999999998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      .||+.+.
T Consensus        81 ~~a~~~~   87 (90)
T d2cqia1          81 NWATTPS   87 (90)
T ss_dssp             EECCCTT
T ss_pred             EEcCCCC
Confidence            9998654

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=7.3e-17  Score=120.93  Aligned_cols=76  Identities=17%  Similarity=0.348  Sum_probs=69.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      .+.|+  |+||+.++++++|+++|++||+|.+|++.+.+ | +|||+|++.++|.+|++.|||..|.|+   .|+|+||.
T Consensus         8 ~~~l~--V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~~k-~-~afV~f~~~~~A~~A~~~l~g~~i~g~---~l~V~~A~   80 (86)
T d2cpja1           8 RSRLF--VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-G-FGFIRLETRTLAEIAKVELDNMPLRGK---QLRVRFAC   80 (86)
T ss_dssp             TTEEE--EESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-T-EEEEECSSSHHHHHHHHHHTTCCBTTB---CCEEEESS
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHHHhCCceEeeeeccc-c-eEEEEECCHHHHHHHHHHhCCCEECCE---EEEEEECC
Confidence            34455  99999999999999999999999999998765 5 599999999999999999999999998   99999998


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      +..
T Consensus        81 ~~~   83 (86)
T d2cpja1          81 HSA   83 (86)
T ss_dssp             CCS
T ss_pred             CcC
Confidence            765

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.5e-17  Score=118.57  Aligned_cols=74  Identities=23%  Similarity=0.346  Sum_probs=66.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      +++|+  |+|+  ++|+++|+++|++||+|.+|++.+.+ | +|||+|++.++|.+|++.|||..|.|+   .|+|+|++
T Consensus         5 ~~ti~--V~~~--~~te~~L~~~F~~~G~I~~v~~~~~~-~-~afV~f~~~~~A~~Ai~~lng~~~~g~---~l~V~~a~   75 (79)
T d2bz2a1           5 GNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-N-CAFVTYEKMESADQAVAELNGTQVESV---QLKVNIAR   75 (79)
T ss_dssp             CCEEE--EECS--SCCHHHHHHHHSTTCCCSCEEEETTT-T-EEEEECSSHHHHHHHHHHHTTCBCSSC---BCEEEECC
T ss_pred             CCEEE--EECC--CCCHHHHHHHHhccCccceeeeccCC-C-EEEEEEcccHHHHHHHHHhCCCEECCE---EEEEEEec
Confidence            56666  7898  49999999999999999999998765 5 599999999999999999999999998   99999998


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ++.
T Consensus        76 ~~P   78 (79)
T d2bz2a1          76 KQP   78 (79)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            653

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=7e-17  Score=121.53  Aligned_cols=76  Identities=22%  Similarity=0.401  Sum_probs=68.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +.+|+  |+||+.++|+++|+++|++||+|++|++..++     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus         7 ~~~l~--V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~-afV~f~~~~~A~~A~~~lng~~l~g~---~l~   80 (88)
T d1rk8a_           7 GWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMGQ---TIQ   80 (88)
T ss_dssp             CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccc-eeEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence            56666  89999999999999999999999999987532     354 99999999999999999999999998   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |+||+++
T Consensus        81 V~~a~~k   87 (88)
T d1rk8a_          81 VDWCFVK   87 (88)
T ss_dssp             EEESEEC
T ss_pred             EEEecCC
Confidence            9998764

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=120.02  Aligned_cols=80  Identities=24%  Similarity=0.300  Sum_probs=71.3

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHh--cCCeeCCCCccEEEE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL--EGHCIYDGGFCKLHI  210 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~l--ng~~i~~~~~~~l~v  210 (340)
                      +|+++|+  |+||+..+|+++|+++|++||.|.+|++.+.+ + +|||+|++.++|.+|++.+  ++..+.|+   .|+|
T Consensus         6 ~Ps~~l~--V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-~-~afV~f~~~e~A~~a~~~~~~~~~~~~g~---~l~v   78 (88)
T d2cq1a1           6 APSRVLH--IRKLPGEVTETEVIALGLPFGKVTNILMLKGK-N-QAFLELATEEAAITMVNYYSAVTPHLRNQ---PIYI   78 (88)
T ss_dssp             SCCSEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHhcccccccccccccc-e-EEEEEeCCHHHHHHHHHHHccCCCccCCC---EEEE
Confidence            4688988  89999999999999999999999999988765 4 5999999999999999876  46688888   9999


Q ss_pred             EeecCCCCc
Q 019494          211 SYSRHTDLS  219 (340)
Q Consensus       211 ~~ak~~~~~  219 (340)
                      .||+.+.++
T Consensus        79 ~~sk~~~lk   87 (88)
T d2cq1a1          79 QYSNHKELK   87 (88)
T ss_dssp             EECSCSSCC
T ss_pred             EECCCCCCC
Confidence            999988764

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.2e-17  Score=120.00  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=65.5

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |||+||+.++|+++|+++|++||+|.+|+|+..+     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+||+
T Consensus         3 lfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~-aFV~f~~~~~a~~ai~~l~g~~~~gr---~i~v~~a~   78 (80)
T d1cvja1           3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGY-AYVNFQQPADAERALDTMNFDVIKGK---PVRIMWSQ   78 (80)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHTTSTTCEETTE---ECEEEECC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCc-eEEEECCHHHHHHHHHHcCCCEECCE---EEEEEEeC
Confidence            4599999999999999999999999999987532     355 99999999999999999999999998   99999986


Q ss_pred             C
Q 019494          215 H  215 (340)
Q Consensus       215 ~  215 (340)
                      .
T Consensus        79 ~   79 (80)
T d1cvja1          79 R   79 (80)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=123.32  Aligned_cols=80  Identities=21%  Similarity=0.306  Sum_probs=70.3

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      +++..|+  |+||++++|+++|+++|+.||.|.++++....     +|+ |||+|.+.++|.+|++.|||..|.|+   .
T Consensus        16 p~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~-afV~f~~~~~A~~Ai~~lng~~~~g~---~   89 (102)
T d2cpza1          16 PEGANLF--IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF-GFVSYDNPVSAQAAIQSMNGFQIGMK---R   89 (102)
T ss_dssp             STTCCEE--EESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---E
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccc-eEEEeCCHHHHHHHHHHhCCCEECCE---E
Confidence            4566666  99999999999999999999999999876432     354 99999999999999999999999998   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|+|+++++.
T Consensus        90 i~V~~a~~k~~  100 (102)
T d2cpza1          90 LKVQLKRSKND  100 (102)
T ss_dssp             CEEECCCCSCC
T ss_pred             EEEEEeCCCCC
Confidence            99999987764

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.3e-17  Score=122.27  Aligned_cols=77  Identities=17%  Similarity=0.317  Sum_probs=68.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +++|+  |+||+.++|+++|+++|++||+|++|+|...+     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus         8 ~~~i~--V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~i~   81 (90)
T d2cq0a1           8 NATIR--VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF-AFISFHRREDAARAIAGVSGFGYDHL---ILN   81 (90)
T ss_dssp             SEEEE--EESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---ECE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHHHhcccccccccccccccccccc-eeEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence            45555  99999999999999999999999999987532     344 99999999999999999999999998   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |+||++++
T Consensus        82 v~~akp~~   89 (90)
T d2cq0a1          82 VEWAKPST   89 (90)
T ss_dssp             EEESSCCC
T ss_pred             EEeeeCCC
Confidence            99998764

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.4e-16  Score=118.92  Aligned_cols=77  Identities=17%  Similarity=0.345  Sum_probs=68.9

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      .+.|+  |+|||..+|+++|+++|++||.|++|++..+.   +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+
T Consensus        11 ~~~l~--v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~-afV~f~~~~~a~~Ai~~l~~~~~~g~---~l~V~   84 (93)
T d2cq3a1          11 PKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEVN   84 (93)
T ss_dssp             CCEEE--EESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHhhcceeeeccccccccCCcce-eEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence            44555  99999999999999999999999999987543   465 99999999999999999999999998   99999


Q ss_pred             eecCCC
Q 019494          212 YSRHTD  217 (340)
Q Consensus       212 ~ak~~~  217 (340)
                      ||+++.
T Consensus        85 ~A~~r~   90 (93)
T d2cq3a1          85 NATARV   90 (93)
T ss_dssp             ECCSSC
T ss_pred             ecCcCC
Confidence            998754

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2e-16  Score=121.56  Aligned_cols=77  Identities=25%  Similarity=0.392  Sum_probs=68.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++.|+  |+||++++|+++|+++|++||.|.+|+|..+     .+|+ |||+|.+.++|.+|++.|||..|.++   .|+
T Consensus         8 ~~~lf--V~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~-afV~f~~~~~a~~A~~~l~g~~~~gr---~i~   81 (99)
T d1whwa_           8 SGRLF--VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGF-AFVTFMFPEHAVKAYAEVDGQVFQGR---MLH   81 (99)
T ss_dssp             CEEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSE-EEEEESSHHHHHHHHHHTTTEESSSC---EEE
T ss_pred             CCEEE--EECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcc-eEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence            45555  9999999999999999999999999998643     2565 99999999999999999999999998   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.+++.+.
T Consensus        82 V~~a~~~~   89 (99)
T d1whwa_          82 VLPSTIKK   89 (99)
T ss_dssp             EEECCCCS
T ss_pred             EEECCCCC
Confidence            99988754

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-16  Score=121.13  Aligned_cols=78  Identities=14%  Similarity=0.251  Sum_probs=69.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .++|+  |+||+..+|+++|+++|++||.|++|+|...     .+|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus         9 ~~tlf--V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~   82 (93)
T d1x5ua1           9 DATVY--VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY-GFVEFLSEEDADYAIKIMDMIKLYGK---PIR   82 (93)
T ss_dssp             TTEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSC-EEEEESSHHHHHHHHHHSSSCBCSSC---BCE
T ss_pred             CCEEE--EeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccc-eEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence            45666  8999999999999999999999999998642     2465 99999999999999999999999999   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |+||+++..
T Consensus        83 V~~A~~~~~   91 (93)
T d1x5ua1          83 VNKASAHNK   91 (93)
T ss_dssp             EEETTTTSC
T ss_pred             EEEcCCCCC
Confidence            999987653

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.7e-17  Score=118.52  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             ccccccCCCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494            6 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT   85 (340)
Q Consensus         6 ~~~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~   85 (340)
                      ....||+++++.+|++|+++|++||+|.+|.+.+  .+++|||+|.+.++|.+|++.|||..+         .|++|+|+
T Consensus         4 ~~~ti~V~~~~~te~~L~~~F~~~G~I~~v~~~~--~~~~afV~f~~~~~A~~Ai~~lng~~~---------~g~~l~V~   72 (79)
T d2bz2a1           4 KGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQV---------ESVQLKVN   72 (79)
T ss_dssp             CCCEEEEECSSCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBC---------SSCBCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhccCccceeeecc--CCCEEEEEEcccHHHHHHHHHhCCCEE---------CCEEEEEE
Confidence            4567899999999999999999999999999876  456899999999999999999999984         69999999


Q ss_pred             eccCC
Q 019494           86 YSAHT   90 (340)
Q Consensus        86 ~s~~~   90 (340)
                      |++.+
T Consensus        73 ~a~~~   77 (79)
T d2bz2a1          73 IARKQ   77 (79)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            99865

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.6e-17  Score=121.91  Aligned_cols=74  Identities=20%  Similarity=0.320  Sum_probs=67.1

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      |+|+||+.++|+++|+++|+.||.|++++|...+   +|+ |||+|++.++|.+|++.|||..|.|+   .|+|++++++
T Consensus        11 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~i~V~~a~~~   86 (89)
T d1cvja2          11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVGRFKSR   86 (89)
T ss_dssp             EEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSC-EEEEESCHHHHHHHTTSSSEEEETTE---EEEEEECCCT
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcce-eEEEECCHHHHHHHHHHcCCCEECCE---EEEEEECCCC
Confidence            3499999999999999999999999999987543   466 99999999999999999999999998   9999999865


Q ss_pred             C
Q 019494          217 D  217 (340)
Q Consensus       217 ~  217 (340)
                      .
T Consensus        87 ~   87 (89)
T d1cvja2          87 K   87 (89)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-16  Score=120.15  Aligned_cols=77  Identities=21%  Similarity=0.286  Sum_probs=68.5

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      .+++|+  |+||+.++|+++|+++|++||+|++|.+..++     +|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus         6 ~s~tlf--V~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~-afV~f~~~~~A~~Ai~~l~g~~~~gr---~i   79 (93)
T d1h2vz_           6 KSCTLY--VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGF-CFVEYYSRADAENAMRYINGTRLDDR---II   79 (93)
T ss_dssp             TCCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTSEETTE---EC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccce-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence            366777  89999999999999999999999999987532     345 99999999999999999999999998   99


Q ss_pred             EEEeecCC
Q 019494          209 HISYSRHT  216 (340)
Q Consensus       209 ~v~~ak~~  216 (340)
                      +|+|+...
T Consensus        80 ~V~~a~~~   87 (93)
T d1h2vz_          80 RTDWDAGF   87 (93)
T ss_dssp             EEEEESCC
T ss_pred             EEEEcCCC
Confidence            99998654

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-16  Score=119.32  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=67.2

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|+|||.++|+++|+++|++||+|++|+|..+     ++|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+||+
T Consensus         4 lfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~-aFV~f~~~~~A~~a~~~l~~~~l~g~---~l~V~~A~   79 (85)
T d2u2fa_           4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRAS   79 (85)
T ss_dssp             EEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCE-EEEEESSSHHHHHHHHTSSSCCCSSS---CCEEEECC
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCccceEEeecccccccccee-EEEEECCHHHHHHHHHHhCCCEECCE---EEEEEECC
Confidence            559999999999999999999999999998753     2465 99999999999999999999999999   99999997


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ...
T Consensus        80 ~~~   82 (85)
T d2u2fa_          80 VGA   82 (85)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.4e-16  Score=124.74  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      +++|+  |+|||..+|+++|+++|+.||+|++|.|.+. +|+ |||+|.+.++|.+|++.|||..|.++   .|+|+|++
T Consensus        10 ~~~l~--V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~~-kg~-afV~f~~~~~A~~A~~~lng~~~~gr---~l~v~~a~   82 (111)
T d1whxa_          10 KTVIL--AKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-GIT-AIVEFLEPLEARKAFRHLAYSKFHHV---PLYLEWAP   82 (111)
T ss_dssp             EEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCSS-SSC-EEEEESCHHHHHHHHHHHTTCBSSSS---BCEEEEEE
T ss_pred             CCEEE--EECCCCCCCHHHHHhhhhccCCccEEEeecc-Cce-EEEEEcCHHHHHHHHHHHcCCccCCC---eEEEEECC
Confidence            45666  9999999999999999999999999988654 465 99999999999999999999999998   99999997


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ...
T Consensus        83 ~~~   85 (111)
T d1whxa_          83 IGV   85 (111)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            654

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.1e-16  Score=119.51  Aligned_cols=73  Identities=26%  Similarity=0.443  Sum_probs=65.1

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS  211 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~  211 (340)
                      +||+||+.++|+++|+++|++||.|++|+|..++        +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~-afV~f~~~~~A~~A~~~~~~~~~~g~---~i~V~   76 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF-GFVEYKKPEQAQKALKQLQGHTVDGH---KLEVR   76 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEE-EEEEESSHHHHHHHHHHSTTCEETTE---ECEEE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEEE
Confidence            4599999999999999999999999999986421        354 99999999999999999999999998   99999


Q ss_pred             eecCC
Q 019494          212 YSRHT  216 (340)
Q Consensus       212 ~ak~~  216 (340)
                      |++..
T Consensus        77 ~a~~~   81 (85)
T d2cpfa1          77 ISERA   81 (85)
T ss_dssp             CSSCS
T ss_pred             ECCCC
Confidence            98643

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.2e-16  Score=118.88  Aligned_cols=77  Identities=16%  Similarity=0.281  Sum_probs=68.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC--CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~--~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +++|+  |.|||.++|+++|+++|+.||.|+.+++..+  .+++ |||+|++.++|.+|++.|||+.|.++   .|+|+|
T Consensus        14 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~e~a~~Ai~~l~g~~~~g~---~l~V~~   87 (95)
T d1x4aa1          14 DCRIY--VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF-AFVEFEDPRDAEDAVYGRDGYDYDGY---RLRVEF   87 (95)
T ss_dssp             SSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCC-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEC
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHhcCCceEEEEecccccccce-EEEEECCHHHHHHHHHHhCCCEECCE---EEEEEe
Confidence            55666  9999999999999999999999999988643  3465 99999999999999999999999998   999999


Q ss_pred             ecCCC
Q 019494          213 SRHTD  217 (340)
Q Consensus       213 ak~~~  217 (340)
                      ++..+
T Consensus        88 a~~~r   92 (95)
T d1x4aa1          88 PRSGR   92 (95)
T ss_dssp             CCCCC
T ss_pred             ccCCC
Confidence            88643

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-16  Score=119.13  Aligned_cols=78  Identities=24%  Similarity=0.179  Sum_probs=67.7

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      -|+.-|||++++.+  |++|+++|++||.|.++++..++++++|||+|.+.++|.+|+..|||..|        ..|++|
T Consensus         8 pPs~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~i--------~~g~~l   79 (88)
T d2adca2           8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL--------GENHHL   79 (88)
T ss_dssp             CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBS--------SSSCBC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeeecccceeEEEECCHHHHHHHHHhccCCEe--------cCCCEE
Confidence            35667899999965  89999999999999998877655677899999999999999999999986        358999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|+||+.+
T Consensus        80 ~v~~sk~~   87 (88)
T d2adca2          80 RVSFSKST   87 (88)
T ss_dssp             EEEECSSC
T ss_pred             EEEeCCCC
Confidence            99999853

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.2e-16  Score=120.22  Aligned_cols=77  Identities=19%  Similarity=0.417  Sum_probs=68.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHh-cCCeeCCCCccE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCK  207 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~l-ng~~i~~~~~~~  207 (340)
                      ++.|+  |+||+.++|+++|+++|+.||.|..|+|+.+      ++|+ |||+|.+.++|.+|++.| ||..|.|+   .
T Consensus         8 ~~~l~--V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~-afV~f~~~~~A~~Ai~~l~~~~~~~Gr---~   81 (94)
T d2cpha1           8 TSKIL--VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGF-GFVDFITKQDAKKAFNALCHSTHLYGR---R   81 (94)
T ss_dssp             CCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSE-EEEEESSHHHHHHHHHHHHTCCBSSSC---B
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccE-EEEEECCHHHHHHHHHHccCCcEECCE---E
Confidence            45566  8999999999999999999999999998643      2565 999999999999999998 89999998   9


Q ss_pred             EEEEeecCCC
Q 019494          208 LHISYSRHTD  217 (340)
Q Consensus       208 l~v~~ak~~~  217 (340)
                      |+|+||+.+.
T Consensus        82 l~V~~A~~~~   91 (94)
T d2cpha1          82 LVLEWADSEV   91 (94)
T ss_dssp             CEEEECCCCC
T ss_pred             EEEEEcCCCC
Confidence            9999998764

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.6e-17  Score=118.85  Aligned_cols=74  Identities=30%  Similarity=0.344  Sum_probs=66.1

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC-eeCCCCccEEEEEeecCCCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH-CIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~-~i~~~~~~~l~v~~ak~~~~  218 (340)
                      |+|+|||.++|+++|+++|++||.|..+++..++ | +|||+|.+.++|.+|++.|||. .|.|+   .|+|+||+++..
T Consensus         4 l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~r-g-~aFV~f~~~~~A~~Ai~~lng~~~~~G~---~i~V~~a~~k~~   78 (80)
T d2cqha1           4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS-G-YAFVDYPDQNWAIRAIETLSGKVELHGK---IMEVDYSVSKKL   78 (80)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEET-T-EEEECCSCHHHHHHHHHHHTTTCEETTE---ECEEEECCCCCC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCcEEEeEEeccc-c-eEEEEECCHHHHHHHHHHhCCCeEECCE---EEEEEEcCCcCc
Confidence            4599999999999999999999999888777655 5 5999999999999999999996 68998   999999987653

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3e-16  Score=123.59  Aligned_cols=76  Identities=25%  Similarity=0.473  Sum_probs=68.9

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC--CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~--~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      +++|+  |+||+..+|+++|+++|++||.|++|++...  .+|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|
T Consensus         7 ~r~l~--V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~-afV~f~~~~~A~~Ai~~l~g~~~~gr---~l~V~~   80 (114)
T d2f9da1           7 NRILY--IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGT-AYVVYEDIFDAKNACDHLSGFNVCNR---YLVVLY   80 (114)
T ss_dssp             CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHhhcCCeEeecccccCCcCCe-EEEEECCHHHHHHHHHHhCCCEECCE---EEEEEE
Confidence            66766  8999999999999999999999999998753  3576 99999999999999999999999998   999999


Q ss_pred             ecCC
Q 019494          213 SRHT  216 (340)
Q Consensus       213 ak~~  216 (340)
                      ++..
T Consensus        81 a~~~   84 (114)
T d2f9da1          81 YNAN   84 (114)
T ss_dssp             CCHH
T ss_pred             cCCC
Confidence            8654

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-16  Score=117.54  Aligned_cols=75  Identities=16%  Similarity=0.270  Sum_probs=65.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++.|+  |+||+..+|+++|+++|++||+|++|+|..++     +| +|||+|.+.++|.+|++.|||..+.|+ ..+|+
T Consensus         6 ~~~lf--V~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg-~afV~f~~~~~a~~Ai~~lng~~~~G~-~~~i~   81 (85)
T d1fxla2           6 DANLY--VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGA-TEPIT   81 (85)
T ss_dssp             TCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEE-EEEEEESSHHHHHHHHHHHTTCCCTTC-SSCCE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCC-eeEEEEcCHHHHHHHHHHhCCCEeCCC-CEEEE
Confidence            44566  99999999999999999999999999987532     34 499999999999999999999999986 34799


Q ss_pred             EEee
Q 019494          210 ISYS  213 (340)
Q Consensus       210 v~~a  213 (340)
                      |+||
T Consensus        82 V~~A   85 (85)
T d1fxla2          82 VKFA   85 (85)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9986

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.1e-16  Score=116.83  Aligned_cols=72  Identities=17%  Similarity=0.074  Sum_probs=64.2

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|+|||.++|+++|+++|++||.|.+++++.     +++|+ |||+|.+.++|.+|++.|||..+.|+   .|+|+||+
T Consensus         4 l~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afV~f~~~e~A~~Ai~~l~g~~~~g~---~i~V~~a~   79 (81)
T d2ghpa1           4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRF-AYIDVTSKEDARYCVEKLNGLKIEGY---TLVTKVSN   79 (81)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECC
T ss_pred             EEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccce-eEEEECCHHHHHHHHHHhCCCEECCE---EEEEEEcc
Confidence            44999999999999999999999999887653     23565 99999999999999999999999998   99999997


Q ss_pred             C
Q 019494          215 H  215 (340)
Q Consensus       215 ~  215 (340)
                      +
T Consensus        80 P   80 (81)
T d2ghpa1          80 P   80 (81)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.5e-16  Score=118.00  Aligned_cols=78  Identities=14%  Similarity=0.388  Sum_probs=68.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +..|+  |+|||.++|+++|+++|++||.|.++.+...     .+|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus         5 ~~kif--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~l~~~~~~g~---~l~   78 (90)
T d1x5sa1           5 EGKLF--VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGF-GFVTFENIDDAKDAMMAMNGKSVDGR---QIR   78 (90)
T ss_dssp             CSEEE--EESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSE-EEEECSSHHHHHHHHHHHTTCCTTSC---CCE
T ss_pred             CCEEE--EECCCCcCCHHHHHHhhhccccccceeeccccccccccce-EEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence            44555  9999999999999999999999999987642     2565 99999999999999999999999999   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |++++.+..
T Consensus        79 V~~a~~~~~   87 (90)
T d1x5sa1          79 VDQAGKSSD   87 (90)
T ss_dssp             EEEEECCCC
T ss_pred             EEEcCCCCC
Confidence            999876653

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.7e-16  Score=115.54  Aligned_cols=71  Identities=18%  Similarity=0.294  Sum_probs=64.9

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|+||++++|+++|+++|++||.|++|+|...+    +|+ |||+|.+.++|.+|++.|||..+.|+   .|+|+++.
T Consensus         3 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~l~g~---~l~V~~a~   77 (78)
T d1no8a_           3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGT-ADVHFERKADALKAMKQYNGVPLDGR---PMNIQLVT   77 (78)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEEEC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeecccccee-EEEEECCHHHHHHHHHHhCCCEECCE---EEEEEEee
Confidence            4599999999999999999999999999987543    455 99999999999999999999999998   99999975

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=6.6e-16  Score=112.57  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL  218 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~  218 (340)
                      |+|+|||.++|+++|+++|++|| +..+.+.+ ++|+ |||+|.+.++|.+|++.|||..+.|+   .|+|+|++....
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~~~-~~g~-afv~f~~~~~A~~Ai~~ln~~~~~g~---~l~V~~a~~d~~   73 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDK-YKGT-AFVTLLNGEQAEAAINTFHQSRLRER---ELSVQLQPTDAL   73 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEEET-TTTE-EEEEESSHHHHHHHHHHHTTEESSSC---EEEEEECCSTTC
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceeecc-ccee-EEEEECCHHHHHHHHHHhCCccCCCC---EEEEEEeCCCCc
Confidence            46999999999999999999999 55555554 4565 99999999999999999999999999   999999977653

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.9e-16  Score=116.21  Aligned_cols=76  Identities=16%  Similarity=0.327  Sum_probs=68.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      .++|+  |+||+.++|+++|+++|++||.|..+.+... +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|+||+
T Consensus         8 ~k~l~--V~nLp~~~te~~l~~~F~~~g~i~~~~~~~~-rg~-afV~f~~~~~A~~Ai~~l~~~~i~g~---~i~V~~ak   80 (86)
T d2cpda1           8 VKILY--VRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-RDY-AFVHFSNREDAVEAMKALNGKVLDGS---PIEVTLAK   80 (86)
T ss_dssp             CCEEE--EESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-SSE-EEEEESSHHHHHHHHHHHSSEEETTE---EEEEECCC
T ss_pred             CCEEE--EcCCCCCCCHHHHHHhhcccceeeeEEEccc-cEE-EEEEeCCHHHHHHHHHHcCCCEECCE---EEEEEecc
Confidence            45666  9999999999999999999999988777554 465 99999999999999999999999998   99999998


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      +.+
T Consensus        81 P~~   83 (86)
T d2cpda1          81 PVD   83 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.9e-16  Score=116.42  Aligned_cols=72  Identities=15%  Similarity=0.151  Sum_probs=64.0

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      +||||+|++.+  |+||+++|++||+|.+|.+..   +.++++|||+|.+.++|++|++.|||..+         .|++|
T Consensus         1 grl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l---------~g~~l   71 (78)
T d1no8a_           1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL---------DGRPM   71 (78)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEE---------CCEEE
Confidence            58999999854  999999999999999998876   33566899999999999999999999984         69999


Q ss_pred             EEeecc
Q 019494           83 RITYSA   88 (340)
Q Consensus        83 ~v~~s~   88 (340)
                      +|+++.
T Consensus        72 ~V~~a~   77 (78)
T d1no8a_          72 NIQLVT   77 (78)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            999875

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.3e-16  Score=117.16  Aligned_cols=74  Identities=24%  Similarity=0.431  Sum_probs=65.0

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEE-EEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v-~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |||+||+.++|+++|+++|++||.|.++ ++..+     ++|+ |||+|.+.++|.+|++.|||..+.|+   .|+|+||
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~~~g~~~~gr---~l~v~~a   76 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGY-AFINFASFDASDAAIEAMNGQYLCNR---PITVSYA   76 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSE-EEEEBSSHHHHHHHHHTTTTCEETTE---ECEEEES
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCce-EEEEECCHHHHHHHHHhCCCcEECCE---EEEEEEe
Confidence            5699999999999999999999999775 45432     2465 99999999999999999999999998   9999998


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      ++++
T Consensus        77 ~~k~   80 (83)
T d1x5ta1          77 FKKD   80 (83)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            8654

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.4e-16  Score=117.08  Aligned_cols=76  Identities=12%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      +++|+  |+|||+++|+++|+++|++|| +..+.+... +| +|||+|.+.++|.+|++.|||..|.|+   .|+|+|++
T Consensus         5 s~~i~--V~nLp~~~t~~~l~~lF~~~G-~~~~~~~~~-kg-~afV~f~~~~~A~~Ai~~ln~~~~~G~---~l~V~~a~   76 (88)
T d1wg1a_           5 SSGIL--VKNLPQDSNCQEVHDLLKDYD-LKYCYVDRN-KR-TAFVTLLNGEQAQNAIQMFHQYSFRGK---DLIVQLQP   76 (88)
T ss_dssp             CCCEE--EESCCSSCCHHHHHHHTCSSC-CCCEEEEGG-GT-EEEECCSCHHHHHHHHHHHTTEEETTE---EEEEEECC
T ss_pred             CCEEE--EeCCCCccChHHHHHHHHhcC-ceeeeeecc-CC-ceEEEECCHHHHHHHHHHhCCCEECCE---EEEEEEcC
Confidence            45666  899999999999999999999 333445444 45 499999999999999999999999999   99999997


Q ss_pred             CCCC
Q 019494          215 HTDL  218 (340)
Q Consensus       215 ~~~~  218 (340)
                      .+..
T Consensus        77 ~~~~   80 (88)
T d1wg1a_          77 TDAL   80 (88)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6543

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.8e-16  Score=117.69  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=66.4

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      .-++|||++++.+  |+||+++|++||+|.+|.+.+  +++||||+|.+.++|++|++.|||..|         .|++|+
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~--~k~~afV~f~~~~~A~~A~~~l~g~~i---------~g~~l~   75 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPL---------RGKQLR   75 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCB---------TTBCCE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeec--ccceEEEEECCHHHHHHHHHHhCCCEE---------CCEEEE
Confidence            3468999999954  999999999999999999875  456899999999999999999999985         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |+|+.++
T Consensus        76 V~~A~~~   82 (86)
T d2cpja1          76 VRFACHS   82 (86)
T ss_dssp             EEESSCC
T ss_pred             EEECCCc
Confidence            9999876

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-16  Score=118.09  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .|...|||++++.+  |++|+++|++||.|.+|++.+  ++++|||+|.+.++|.+|++.+++..+.       +.|++|
T Consensus         6 ~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~--~~~~afV~f~~~e~A~~a~~~~~~~~~~-------~~g~~l   76 (88)
T d2cq1a1           6 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPH-------LRNQPI   76 (88)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCE-------ETTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcccccccccccc--cceEEEEEeCCHHHHHHHHHHHccCCCc-------cCCCEE
Confidence            57788999999965  999999999999999998876  4568999999999999999987654332       579999


Q ss_pred             EEeeccCCccc
Q 019494           83 RITYSAHTDLS   93 (340)
Q Consensus        83 ~v~~s~~~~l~   93 (340)
                      +|+||+++++.
T Consensus        77 ~v~~sk~~~lk   87 (88)
T d2cq1a1          77 YIQYSNHKELK   87 (88)
T ss_dssp             EEEECSCSSCC
T ss_pred             EEEECCCCCCC
Confidence            99999988654

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.62  E-value=2.1e-16  Score=117.12  Aligned_cols=74  Identities=16%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      .+.|||++++.+  |+||+++|++||+|.+|.+.+    +..++||||+|.+.++|++|++.|||..+         .|+
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~---------~g~   72 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---------RNK   72 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEE---------CCE
Confidence            457999999954  899999999999999998875    23466899999999999999999999984         699


Q ss_pred             eEEEeeccC
Q 019494           81 TLRITYSAH   89 (340)
Q Consensus        81 ~l~v~~s~~   89 (340)
                      +|+|+||+.
T Consensus        73 ~l~v~~a~p   81 (82)
T d1b7fa1          73 RLKVSYARP   81 (82)
T ss_dssp             ECEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999999874

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=6.8e-16  Score=119.66  Aligned_cols=83  Identities=12%  Similarity=0.120  Sum_probs=70.3

Q ss_pred             cccccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            3 YIWPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         3 ~~~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      .+.|...|||.+++.+  |+||+++|++||+|.+|++.+  .+++|||+|.+.|+|++|++.|++..+.       ++|+
T Consensus        11 ~~~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~--~k~~AfV~f~~~e~A~~ai~~~~~~~~~-------~~g~   81 (104)
T d1wexa_          11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVY-------IAGQ   81 (104)
T ss_dssp             CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCB-------SSSS
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEe--cceeEEEEeCCHHHHHHHHHHHcCCCcE-------EeeE
Confidence            3567778999999854  999999999999999999876  4568999999999999999999765543       6899


Q ss_pred             eEEEeeccCCcccc
Q 019494           81 TLRITYSAHTDLSV   94 (340)
Q Consensus        81 ~l~v~~s~~~~l~~   94 (340)
                      +|+|+|++.+++..
T Consensus        82 ~l~v~~s~~~~~~~   95 (104)
T d1wexa_          82 QAFFNYSTSKRITR   95 (104)
T ss_dssp             BCEEEECSSSSCCC
T ss_pred             EEEEEEcCCCccCC
Confidence            99999998876543

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.7e-16  Score=115.72  Aligned_cols=73  Identities=16%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..|||+|++.+  |+||+++|++||+|.+|++.+    +..++||||+|.+.++|++|++.|||..|         .|++
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~---------~g~~   73 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---------QTKT   73 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEE---------CCEE
Confidence            35899999965  999999999999999998876    34556899999999999999999999985         6999


Q ss_pred             EEEeeccC
Q 019494           82 LRITYSAH   89 (340)
Q Consensus        82 l~v~~s~~   89 (340)
                      |+|+|++.
T Consensus        74 l~v~~AkP   81 (82)
T d1fxla1          74 IKVSYARP   81 (82)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEeeC
Confidence            99999874

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.1e-16  Score=120.39  Aligned_cols=74  Identities=22%  Similarity=0.378  Sum_probs=65.1

Q ss_pred             CcEEEEEeecCC-CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          135 SNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       135 s~vl~v~v~nl~-~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +.+|+  |+||+ ..+++++|+++|++||.|++|+|.   +|+ |||+|++.++|.+|++.|||+.|.|+   .|+|+|+
T Consensus        15 ~~~lf--V~nL~~~~~~~~~L~~~F~~~G~i~~~~i~---rg~-aFV~f~~~~~A~~Ai~~lng~~~~g~---~l~V~~a   85 (98)
T d1wf2a_          15 NSRVF--IGNLNTLVVKKSDVEAIFSKYGKIVGCSVH---KGF-AFVQYVNERNARAAVAGEDGRMIAGQ---VLDINLA   85 (98)
T ss_dssp             CCCEE--EEEECTTTCCHHHHHHSSTTSSCEEEEEEE---TEE-EEEEESSHHHHHHHHHTTTTCEETTE---ECEEEET
T ss_pred             CcEEE--EeCCCcccCCHHHHHHHHhhcCCEEEEEEe---CCe-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEEEC
Confidence            44555  99996 578899999999999999999984   365 99999999999999999999999999   9999998


Q ss_pred             cCCC
Q 019494          214 RHTD  217 (340)
Q Consensus       214 k~~~  217 (340)
                      +...
T Consensus        86 ~~~~   89 (98)
T d1wf2a_          86 AEPK   89 (98)
T ss_dssp             TSCC
T ss_pred             CCCC
Confidence            7643

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.7e-16  Score=118.21  Aligned_cols=75  Identities=23%  Similarity=0.234  Sum_probs=67.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      ++.|+  |+||+.++|+++|+++|++||+|.+|++..+++|+ |||+|++.++|++|+.  +++.|.|+   .|+|++++
T Consensus         5 s~~lf--V~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~gf-afV~f~~~~~a~~a~~--~~~~i~g~---~l~v~~a~   76 (88)
T d1wf0a_           5 SSGVF--VGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAF-AFVTFADDQIAQSLCG--EDLIIKGI---SVHISNAE   76 (88)
T ss_dssp             CCEEE--EESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSC-CEEECSCHHHHHHTTT--CEEEETTE---EEEEECCC
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHHcCCceEEEEeeccCce-EEEEECCHHHHHHHHh--CCCEECCE---EeEEEeCC
Confidence            56666  89999999999999999999999999988777786 9999999999999985  88899998   99999987


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ++.
T Consensus        77 ~k~   79 (88)
T d1wf0a_          77 PKH   79 (88)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-16  Score=117.91  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      |++|||+|++.+  |+||+++|++||.|.++++.+  +++||||+|.+.++|++|++.|||...        +.|++|+|
T Consensus         1 mn~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~--~rg~aFV~f~~~~~A~~Ai~~lng~~~--------~~G~~i~V   70 (80)
T d2cqha1           1 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVE--------LHGKIMEV   70 (80)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCE--------ETTEECEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEec--ccceEEEEECCHHHHHHHHHHhCCCeE--------ECCEEEEE
Confidence            579999999955  999999999999998887765  346899999999999999999999742        46999999


Q ss_pred             eeccCC
Q 019494           85 TYSAHT   90 (340)
Q Consensus        85 ~~s~~~   90 (340)
                      +|+..+
T Consensus        71 ~~a~~k   76 (80)
T d2cqha1          71 DYSVSK   76 (80)
T ss_dssp             EECCCC
T ss_pred             EEcCCc
Confidence            999865

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.61  E-value=1.1e-15  Score=114.12  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=64.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++.|+  |+|||.++|+++|+++|++||+|.+|++...+     +|+ |||+|.+.++|.+|++.|||..+.+. ..+|+
T Consensus         6 ~t~lf--V~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~-~~~l~   81 (85)
T d1b7fa2           6 DTNLY--VTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV-AFVRYNKREEAQEAISALNNVIPEGG-SQPLS   81 (85)
T ss_dssp             TCEEE--EESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCcee-EEEEECCHHHHHHHHHHHCCCEeCCC-CeEEE
Confidence            44555  99999999999999999999999999987532     355 99999999999999999999999873 24899


Q ss_pred             EEee
Q 019494          210 ISYS  213 (340)
Q Consensus       210 v~~a  213 (340)
                      |+||
T Consensus        82 V~~A   85 (85)
T d1b7fa2          82 VRLA   85 (85)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9986

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.3e-16  Score=118.43  Aligned_cols=71  Identities=11%  Similarity=0.149  Sum_probs=64.4

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT  216 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~  216 (340)
                      |+|+|||+++|+++|+++|++||+|+++++..+  |+ |||+|.+.++|.+|++.|||..|.|+   .|+|.+++..
T Consensus         3 vfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~i~v~~~~~~   73 (87)
T d3begb1           3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSH---EGETAYIRVK   73 (87)
T ss_dssp             EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SE-EEEEESSHHHHHHHHHHHTTCBCCCT---TSCCCBCEEE
T ss_pred             EEEECCCCcCCHHHHHHHHhhhccccccccccc--ce-eeEEeCCHHHHHHHHHHhCCCEECCc---EeEEeEEecC
Confidence            459999999999999999999999999998754  65 99999999999999999999999999   8888887544

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.4e-16  Score=117.80  Aligned_cols=77  Identities=19%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ++..+.|||+|++.  +|++|+++|++||+|.+|.+.+    +..++||||+|.+.++|.+|++.|||..|         
T Consensus         4 ~~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---------   74 (93)
T d1h2vz_           4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL---------   74 (93)
T ss_dssp             TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---------
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEE---------
Confidence            56788999999984  4999999999999999998876    23456899999999999999999999985         


Q ss_pred             CCceEEEeeccC
Q 019494           78 GPCTLRITYSAH   89 (340)
Q Consensus        78 ~~~~l~v~~s~~   89 (340)
                      .|++|+|+|+..
T Consensus        75 ~gr~i~V~~a~~   86 (93)
T d1h2vz_          75 DDRIIRTDWDAG   86 (93)
T ss_dssp             TTEECEEEEESC
T ss_pred             CCEEEEEEEcCC
Confidence            699999999864

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.1e-16  Score=117.43  Aligned_cols=79  Identities=24%  Similarity=0.451  Sum_probs=69.1

Q ss_pred             CCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEcC--CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          134 ESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~~--~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      |+++|+  |+||+..+|+++|+    ++|++||+|.+|++...  .+|+ |||+|++.++|.+|++.|||..+.|+   .
T Consensus         2 P~~tl~--V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~-afV~F~~~~~A~~A~~~~~~~~~~g~---~   75 (91)
T d1nu4a_           2 PNHTIY--INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK---P   75 (91)
T ss_dssp             CCSEEE--EESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTC-EEEEESSHHHHHHHHHHHTTCEETTE---E
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHHHhcccccccceEEeeeccCCCc-eEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence            467777  89999999999886    46899999999998642  3565 99999999999999999999999998   9


Q ss_pred             EEEEeecCCCC
Q 019494          208 LHISYSRHTDL  218 (340)
Q Consensus       208 l~v~~ak~~~~  218 (340)
                      |+|.||+.+..
T Consensus        76 l~v~~ak~~~~   86 (91)
T d1nu4a_          76 MRIQYAKTDSD   86 (91)
T ss_dssp             CEEEECSSCCT
T ss_pred             EEEEEeCCCch
Confidence            99999987654

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.61  E-value=7.9e-16  Score=125.47  Aligned_cols=77  Identities=17%  Similarity=0.366  Sum_probs=68.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .++|+  |+||+.++|+++|+++|++||+|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+
T Consensus        42 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~-afV~f~~~~~A~~Ai~~lng~~~~gr---~l~  115 (139)
T d1u6fa1          42 LRNLM--VNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY-GFVKFQSGSSAQQAIAGLNGFNILNK---RLK  115 (139)
T ss_dssp             TSEEE--EESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEE-EEEEESSHHHHHHHHHHTTTEECSSC---EEE
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHHhhccccccccccccccccccce-eeEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence            45666  99999999999999999999999999987532     455 99999999999999999999999999   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.|++...
T Consensus       116 V~~a~~~~  123 (139)
T d1u6fa1         116 VALAASGH  123 (139)
T ss_dssp             EEESSCCC
T ss_pred             EEEcCCCC
Confidence            99987544

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.61  E-value=3.8e-16  Score=119.36  Aligned_cols=79  Identities=22%  Similarity=0.285  Sum_probs=69.9

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++++|+  |+||+.++|+++|+++|+.||.|..++...+++|+ |||+|.+.++|.+|++.|||..|.|+   .|+|.|+
T Consensus        15 ~~~~l~--V~nL~~~~te~~l~~~F~~~g~v~~~~~~~~~~~~-afV~f~~~~~A~~A~~~l~~~~~~gr---~i~V~~a   88 (96)
T d1fjca_          15 AARTLL--AKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYT   88 (96)
T ss_dssp             GGGEEE--EESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEE-EEEEESSHHHHHHHHHHTTEEEETTE---EEEEEEC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcccceeeeecCccccE-EEEEeCCHHHHHHHHHHcCCCEECCE---EEEEEEe
Confidence            366766  99999999999999999999999888765455665 99999999999999999999999999   9999999


Q ss_pred             cCCCC
Q 019494          214 RHTDL  218 (340)
Q Consensus       214 k~~~~  218 (340)
                      +++..
T Consensus        89 ~~k~~   93 (96)
T d1fjca_          89 GEKGG   93 (96)
T ss_dssp             SSSCC
T ss_pred             CCCCC
Confidence            87653

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.4e-16  Score=115.53  Aligned_cols=72  Identities=19%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .|||++++.+  |++|+++|++||+|.+|++++    +.+++||||+|.+.++|.+|++.|||..+         .|++|
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~---------~gr~i   72 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---------KGKPV   72 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEE---------TTEEC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEE---------CCEEE
Confidence            4788888854  899999999999999999987    23457899999999999999999999985         69999


Q ss_pred             EEeeccC
Q 019494           83 RITYSAH   89 (340)
Q Consensus        83 ~v~~s~~   89 (340)
                      +|+|++.
T Consensus        73 ~v~~a~~   79 (80)
T d1cvja1          73 RIMWSQR   79 (80)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9999864

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=7.1e-16  Score=117.35  Aligned_cols=77  Identities=18%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee-----ecCCceEEEEeCCHHHHHHHHHHh-cCCCCCccCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE-----KTAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPEN   76 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~-----~~~~~~AFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~   76 (340)
                      .+.++|||+|++.+  |++|+++|+.||.|.+|.+++     +.+++||||+|.+.++|.+|++.| ||..|        
T Consensus         6 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~--------   77 (94)
T d2cpha1           6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--------   77 (94)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--------
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEE--------
Confidence            35678999999854  999999999999999998865     235678999999999999999998 78774        


Q ss_pred             CCCceEEEeeccCC
Q 019494           77 MGPCTLRITYSAHT   90 (340)
Q Consensus        77 ~~~~~l~v~~s~~~   90 (340)
                       .|++|+|+||+.+
T Consensus        78 -~Gr~l~V~~A~~~   90 (94)
T d2cpha1          78 -YGRRLVLEWADSE   90 (94)
T ss_dssp             -SSCBCEEEECCCC
T ss_pred             -CCEEEEEEEcCCC
Confidence             6999999999865

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.61  E-value=8.4e-16  Score=114.17  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      |+..|||++++.+  |++|+++|++||+|.+|++++++ +++|||+|.|.++|.+|++.|||..|        ..+++|+
T Consensus         7 P~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~--------~~~~~i~   77 (83)
T d2b0ga1           7 PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNR-HDIAFVEFTTELQSNAAKEALQGFKI--------TPTHAMK   77 (83)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTTT-CSCEEEEESSHHHHHHHHHHHTTCBS--------STTCBCE
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhccCccEEEeeeeccc-ceeEEEecCCHHHHHHHHHHhCCcEe--------CCCcEEE
Confidence            5667899999854  89999999999999999988754 45799999999999999999999986        3578999


Q ss_pred             EeeccC
Q 019494           84 ITYSAH   89 (340)
Q Consensus        84 v~~s~~   89 (340)
                      |+||+.
T Consensus        78 v~~akk   83 (83)
T d2b0ga1          78 ITFAKK   83 (83)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            999873

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.6e-16  Score=114.07  Aligned_cols=71  Identities=23%  Similarity=0.377  Sum_probs=63.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+..+|+++|+++|++||.|++|+|..++     +|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus         8 ~~~~l~--V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~gr---~i   81 (83)
T d2cqca1           8 PNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---RI   81 (83)
T ss_dssp             GGGCEE--EESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccc-eEEEECCHHHHHHHHHHcCCCEECCE---Ee
Confidence            366776  89999999999999999999999999987532     344 99999999999999999999999998   88


Q ss_pred             EE
Q 019494          209 HI  210 (340)
Q Consensus       209 ~v  210 (340)
                      +|
T Consensus        82 ~V   83 (83)
T d2cqca1          82 RV   83 (83)
T ss_dssp             EE
T ss_pred             EC
Confidence            86

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.3e-16  Score=115.85  Aligned_cols=74  Identities=12%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      .||||++++.+  |+||+++|++||+|.+|++++    +.+++||||+|.+.++|.+|++.|||..         +.|++
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~---------l~g~~   72 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ---------LGDKK   72 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCC---------CSSSC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCE---------ECCEE
Confidence            48999998843  899999999999999999876    3457899999999999999999999988         46999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|++++..
T Consensus        73 l~V~~A~~~   81 (85)
T d2u2fa_          73 LLVQRASVG   81 (85)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEECCCC
Confidence            999999754

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.6e-16  Score=117.30  Aligned_cols=76  Identities=14%  Similarity=0.029  Sum_probs=66.7

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.+  |+||+++|++||+|.+|.+++    +.+++||||+|.+.++|++|++.|||..|         .|+
T Consensus         9 ~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~   79 (93)
T d1x5ua1           9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---------YGK   79 (93)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---------SSC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence            467999999954  899999999999999998875    34567899999999999999999999984         699


Q ss_pred             eEEEeeccCCc
Q 019494           81 TLRITYSAHTD   91 (340)
Q Consensus        81 ~l~v~~s~~~~   91 (340)
                      +|+|++++.++
T Consensus        80 ~l~V~~A~~~~   90 (93)
T d1x5ua1          80 PIRVNKASAHN   90 (93)
T ss_dssp             BCEEEETTTTS
T ss_pred             EEEEEEcCCCC
Confidence            99999998653

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.6e-16  Score=118.43  Aligned_cols=73  Identities=22%  Similarity=0.284  Sum_probs=65.3

Q ss_pred             cccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      ..+|||++++.  +|++|+++|++||+|.+|++.+  ++++|||+|.+.++|.+|++.|||+.|         .|++|+|
T Consensus        18 ~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~--~kg~afV~f~~~~~A~~Ai~~l~~~~i---------~g~~l~v   86 (96)
T d1x4ga1          18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTI---------EGHVVKC   86 (96)
T ss_dssp             CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEE
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEe--cceEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEE
Confidence            35799999984  4999999999999999999886  467899999999999999999999985         6999999


Q ss_pred             eeccCC
Q 019494           85 TYSAHT   90 (340)
Q Consensus        85 ~~s~~~   90 (340)
                      +|++.+
T Consensus        87 ~~ak~~   92 (96)
T d1x4ga1          87 YWGKES   92 (96)
T ss_dssp             ECCCCC
T ss_pred             EEcCCC
Confidence            998754

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.9e-16  Score=117.23  Aligned_cols=77  Identities=18%  Similarity=0.240  Sum_probs=66.9

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .|..+|||++++.+  |++|+++|++||+|.+|++.+  ++++|||+|.|.++|.+|++.|||..|.       ..+++|
T Consensus        15 ~Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~--~~~~afV~f~~~~~A~~A~~~l~~~~i~-------g~~~~l   85 (97)
T d1whya_          15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLG-------GPDRRL   85 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCS-------SSSCBC
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeec--cccEEEeccCCHHHHHHHHHHhCCCEeC-------CCceEE
Confidence            36789999998854  899999999999999999876  3468999999999999999999999874       345799


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|+|++..
T Consensus        86 ~v~~ak~~   93 (97)
T d1whya_          86 RVDFAKSG   93 (97)
T ss_dssp             EEEECCCC
T ss_pred             EEEeCCCC
Confidence            99999864

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1e-15  Score=114.29  Aligned_cols=73  Identities=14%  Similarity=0.224  Sum_probs=62.6

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ++|||++++.+  |+||+++|++||+|.++++++    +.+++||||+|.+.++|++|++.|||..+.       ...++
T Consensus         7 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~-------G~~~~   79 (85)
T d1fxla2           7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS-------GATEP   79 (85)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-------TCSSC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeC-------CCCEE
Confidence            57999999954  999999999999999998876    235668999999999999999999999864       23467


Q ss_pred             EEEeec
Q 019494           82 LRITYS   87 (340)
Q Consensus        82 l~v~~s   87 (340)
                      |+|.||
T Consensus        80 i~V~~A   85 (85)
T d1fxla2          80 ITVKFA   85 (85)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999986

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.2e-15  Score=114.90  Aligned_cols=75  Identities=16%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             CCcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHh--cCCeeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL--EGHCIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~l--ng~~i~~~~~~~l~v  210 (340)
                      +++||+  |.||+.. +|++||+++|+.||+|.+|.+...++  +|||+|++.++|..|++.|  ++..+.|+   +|+|
T Consensus         7 ~sr~v~--v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~~k~--~afV~f~~~~~A~~A~~~l~~~~~~~~gr---~l~V   79 (89)
T d1x4da1           7 TRRVVH--IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN--EAFIEMATTEDAQAAVDYYTTTPALVFGK---PVRV   79 (89)
T ss_dssp             CCCEEE--EESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSS--CEEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred             CCcEEE--EECCCCCcCCHHHHHHHHHhhCCeEEEEeeccce--EEEEEEcchhhHHHHHHHHhhCCCccCCc---eEEE
Confidence            478887  8899985 88999999999999999999987664  5999999999999999976  56788998   9999


Q ss_pred             EeecC
Q 019494          211 SYSRH  215 (340)
Q Consensus       211 ~~ak~  215 (340)
                      +||+.
T Consensus        80 ~~s~~   84 (89)
T d1x4da1          80 HLSQK   84 (89)
T ss_dssp             EEECC
T ss_pred             EECCC
Confidence            99974

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-15  Score=115.90  Aligned_cols=76  Identities=13%  Similarity=0.190  Sum_probs=66.6

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ...+|||++++.+  |++|+++|++||+|.+|.++.  +.+++||||+|.+.++|.+|++.|||..+         .|++
T Consensus        10 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~---------~g~~   80 (93)
T d2cq3a1          10 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGRK   80 (93)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE---------TTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEE---------CCEE
Confidence            3457899999854  899999999999999998876  33567899999999999999999999984         6999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|++++.+
T Consensus        81 l~V~~A~~r   89 (93)
T d2cq3a1          81 IEVNNATAR   89 (93)
T ss_dssp             CEEEECCSS
T ss_pred             EEEEecCcC
Confidence            999999865

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.9e-15  Score=115.91  Aligned_cols=75  Identities=15%  Similarity=0.134  Sum_probs=67.3

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      ..+|+  |+||++++++++|+++|+.||+|+++.|.++  |+ |||+|.+.++|.+|++.|||..+.++   .|+|.|++
T Consensus        15 ~~~i~--V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~~--g~-afV~f~~~~~a~~Ai~~lng~~~~g~---~i~v~~~~   86 (98)
T d1wg4a_          15 DFRVL--VSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKFRSH---EGETSYIR   86 (98)
T ss_dssp             SCEEE--EECCCSSCCHHHHHHHHTTSSCEEEEEEETT--TE-EEEEESSHHHHHHHHHHHSSEEEECT---TSCEEEEE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHHhhccccccccccc--ce-EEEEECCHHHHHHHHHHhCCCEeCCe---EEEEEEEe
Confidence            44555  9999999999999999999999999998753  65 99999999999999999999999999   99999987


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ...
T Consensus        87 ~~~   89 (98)
T d1wg4a_          87 VYP   89 (98)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            654

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.3e-15  Score=118.08  Aligned_cols=78  Identities=12%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             CCcEEEEEeecCCCCC-CH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAV-TL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~v-t~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      .++.|+  |.||+..| ++    ++|+++|++||.|+++++++.++  +|||+|++.++|.+|++.|||..|.|+   .|
T Consensus         4 ~~~~L~--v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~~~--~afV~f~~~~~A~~Ai~~lng~~~~g~---~l   76 (104)
T d1weya_           4 GSSGLI--ACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK---EM   76 (104)
T ss_dssp             CCCEEE--EECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE---EC
T ss_pred             CCceEE--EEeCCchhcCcHHHHHHHHHHhcccccceEEEEecCCC--EEEEEECCHHHHHHHHHHhcccccCCC---Ee
Confidence            356677  88998876 43    56999999999999999987654  699999999999999999999999999   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|.|++....
T Consensus        77 ~v~~a~~~~~   86 (104)
T d1weya_          77 KLYFAQTLHI   86 (104)
T ss_dssp             EEECCCCSSC
T ss_pred             EEeecccCCC
Confidence            9999976654

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-15  Score=116.65  Aligned_cols=77  Identities=21%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      .+.++|||++++.+  |+||+++|+.||.|.++.+.+ ...+++|||+|.+.|+|++|++.|||..|         .|++
T Consensus        12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~---------~g~~   82 (95)
T d1x4aa1          12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---------DGYR   82 (95)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE---------TTEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHHhCCCEE---------CCEE
Confidence            45678999999954  999999999999999998765 34567899999999999999999999985         6999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|+|++..
T Consensus        83 l~V~~a~~~   91 (95)
T d1x4aa1          83 LRVEFPRSG   91 (95)
T ss_dssp             CEEECCCCC
T ss_pred             EEEEeccCC
Confidence            999998854

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=8.3e-16  Score=115.01  Aligned_cols=75  Identities=17%  Similarity=0.328  Sum_probs=64.5

Q ss_pred             CcEEEEEeecCCCCCC-HHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494          135 SNVLLASIENMQYAVT-LDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK  207 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt-~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~  207 (340)
                      ++.|+  |+||+.++| +|+|+++|++||.|++|+|...      ++|+ |||+|.+.++|.+|++ |||..|.|+   .
T Consensus         4 ~~~l~--V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~-afV~f~~~~~a~~Al~-~n~~~~~gr---~   76 (86)
T d2ghpa3           4 GREIM--IRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC-AFMVFENKDSAERALQ-MNRSLLGNR---E   76 (86)
T ss_dssp             TTEEE--EEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEE-EEEEESSHHHHHHHGG-GTTEEETTE---E
T ss_pred             CCEEE--EECCCCCcccHHHHHHHHHhhhhccceeeecccCCcccccee-eeEEECCHHHHHHHHh-cCCCEECCE---E
Confidence            55666  899999876 5679999999999999997542      2455 9999999999999996 999999998   9


Q ss_pred             EEEEeecCC
Q 019494          208 LHISYSRHT  216 (340)
Q Consensus       208 l~v~~ak~~  216 (340)
                      |+|+||+++
T Consensus        77 l~V~~a~~k   85 (86)
T d2ghpa3          77 ISVSLADKK   85 (86)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEcCCC
Confidence            999999864

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=118.06  Aligned_cols=76  Identities=24%  Similarity=0.414  Sum_probs=67.3

Q ss_pred             cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      ++|+  |+||+.++|+++|+++|++||+|++|+|...+     +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|
T Consensus         9 rtl~--V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~-afV~f~~~~~a~~ai~~l~~~~~~g~---~i~V   82 (104)
T d1p1ta_           9 RSVF--VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY-GFCEYQDQETALSAMRNLNGREFSGR---ALRV   82 (104)
T ss_dssp             SCEE--EESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEE-EEEECSCHHHHHHHHHHSSSBSCSSS---CBEE
T ss_pred             CEEE--EECCCCcCCHHHHHHhhhccccccccccccccceeccCCc-eEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence            3455  99999999999999999999999999986532     355 99999999999999999999999998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      .|+....
T Consensus        83 ~~a~~~~   89 (104)
T d1p1ta_          83 DNAASEK   89 (104)
T ss_dssp             EETTCTT
T ss_pred             EECCCCC
Confidence            9987653

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.1e-16  Score=120.32  Aligned_cols=79  Identities=23%  Similarity=0.315  Sum_probs=69.9

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ++++|+  |+||+.++|+++|+++|+.||.|..+++..     +.+|+ |||+|.+.++|.+|++.|||..|.|+   .|
T Consensus        17 ps~tl~--V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-~fV~f~~~~~A~~Ai~~l~g~~~~g~---~l   90 (102)
T d2cpxa1          17 PNKVLY--LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQ-AFITFPNKEIAWQALHLVNGYKLYGK---IL   90 (102)
T ss_dssp             CCSEEE--EECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSE-EEEECSSHHHHHHHHHHSTTCBCSSC---BC
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHhhccceeeEEeeccccccccccc-ceEEeccHHHHHHHHHHhCCCEECCE---EE
Confidence            577777  899999999999999999999999887642     33565 99999999999999999999999998   99


Q ss_pred             EEEeecCCCC
Q 019494          209 HISYSRHTDL  218 (340)
Q Consensus       209 ~v~~ak~~~~  218 (340)
                      +|+||++++.
T Consensus        91 ~V~~ak~k~~  100 (102)
T d2cpxa1          91 VIEFGKNKKQ  100 (102)
T ss_dssp             EEEECCCCSC
T ss_pred             EEEeCCCccc
Confidence            9999987654

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8e-16  Score=116.09  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=66.2

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      +...|||++++.+  |++|+++|++||+|.+|.+.+    +.+++||||+|.+.++|.+|++.|||..|         .|
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~---------~g   77 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---------DH   77 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---------TT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEE---------CC
Confidence            3467899999954  999999999999999998876    23566899999999999999999999885         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|+|++.+
T Consensus        78 ~~i~v~~akp~   88 (90)
T d2cq0a1          78 LILNVEWAKPS   88 (90)
T ss_dssp             EECEEEESSCC
T ss_pred             EEEEEEeeeCC
Confidence            99999999854

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.8e-15  Score=116.24  Aligned_cols=77  Identities=10%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             CCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHH--HhcCCeeCCCCccEEEE
Q 019494          134 ESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE--ALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       134 ~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~--~lng~~i~~~~~~~l~v  210 (340)
                      ++++|+  |.|||. .+|+++|+++|++||.|.+|.+.+.+ | +|||+|.+.++|.+|++  .+++..+.|+   .|+|
T Consensus        17 ~~~~l~--v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~~k-~-~afV~f~~~~~A~~Ai~~~~~~~~~~~gr---~l~V   89 (99)
T d1x4fa1          17 LGRVIH--LSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-S-QAFIEMETREDAMAMVDHCLKKALWFQGR---CVKV   89 (99)
T ss_dssp             CCCEEE--EESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-T-EEEEECSSHHHHHHHHHHHHHSCCCSSSS---CCEE
T ss_pred             CCCEEE--EeCCcCCccCHHHHHhhhccccceeEEEEeecC-C-cEEEEecchHHHHHHHHHHhcCCceECCE---EEEE
Confidence            467877  889987 48999999999999999999998765 4 59999999999999998  5778889998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      +||+...
T Consensus        90 ~~s~~~~   96 (99)
T d1x4fa1          90 DLSEKYK   96 (99)
T ss_dssp             EEECSCS
T ss_pred             EEcCCcc
Confidence            9996543

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=9.4e-16  Score=115.20  Aligned_cols=75  Identities=20%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...|||+|++.+  |+||+++|++||+|.+|++.+    +.+++||||+|.+.++|++|++.|||..+         .|+
T Consensus         7 ~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l---------~g~   77 (88)
T d1rk8a_           7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------MGQ   77 (88)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence            346899999854  899999999999999998876    23466899999999999999999999984         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|+|+..+
T Consensus        78 ~l~V~~a~~k   87 (88)
T d1rk8a_          78 TIQVDWCFVK   87 (88)
T ss_dssp             ECEEEESEEC
T ss_pred             EEEEEEecCC
Confidence            9999998753

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3.8e-15  Score=113.82  Aligned_cols=77  Identities=18%  Similarity=0.298  Sum_probs=66.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhc------CCeeCCC
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE------GHCIYDG  203 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~ln------g~~i~~~  203 (340)
                      +++|+  |+||++++|+++|+++|++||.|.++.+...     ++|+ |||+|.+.++|.+|++.||      |..|.|+
T Consensus         8 ~~tlf--V~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr   84 (98)
T d1x4ha1           8 GKTVF--IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGC-AFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR   84 (98)
T ss_dssp             CCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSE-EEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred             CCEEE--EcCCCCcCCHHHHHHHHhccccceeeeeccccccccccce-EEEEEcCHHHHHHHHHHcccccccCCcEECCE
Confidence            56666  9999999999999999999999999987542     3565 9999999999999999997      5677888


Q ss_pred             CccEEEEEeecCCC
Q 019494          204 GFCKLHISYSRHTD  217 (340)
Q Consensus       204 ~~~~l~v~~ak~~~  217 (340)
                         .|+|+||++++
T Consensus        85 ---~l~v~~a~~k~   95 (98)
T d1x4ha1          85 ---QLKVDLAVTRD   95 (98)
T ss_dssp             ---EEEEECCCCCC
T ss_pred             ---EEEEEECCCCC
Confidence               99999998754

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.58  E-value=2.1e-15  Score=112.42  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=62.8

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      .+|||++++.+  |++|+++|++||+|.++++++    +.+++||||+|.+.++|.+|++.|||..+.       ..+++
T Consensus         7 t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-------g~~~~   79 (85)
T d1b7fa2           7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE-------GGSQP   79 (85)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-------TCSSC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeC-------CCCeE
Confidence            45999999854  999999999999999998876    345678999999999999999999998864       34588


Q ss_pred             EEEeec
Q 019494           82 LRITYS   87 (340)
Q Consensus        82 l~v~~s   87 (340)
                      |+|+|+
T Consensus        80 l~V~~A   85 (85)
T d1b7fa2          80 LSVRLA   85 (85)
T ss_dssp             CEEEEC
T ss_pred             EEEEEC
Confidence            999985

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.7e-15  Score=114.30  Aligned_cols=76  Identities=16%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +...|||+|++.+  |++|+++|+.||+|.+|.+.+  ...++||||+|.+.++|.+|++.|||..|         .|+.
T Consensus         7 ~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~---------~g~~   77 (90)
T d2cqia1           7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI---------LGKE   77 (90)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE---------TTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEE---------CCEE
Confidence            4567999999854  999999999999999998875  33567899999999999999999999985         6999


Q ss_pred             EEEeeccCC
Q 019494           82 LRITYSAHT   90 (340)
Q Consensus        82 l~v~~s~~~   90 (340)
                      |+|+|++..
T Consensus        78 i~v~~a~~~   86 (90)
T d2cqia1          78 VKVNWATTP   86 (90)
T ss_dssp             EEEEECCCT
T ss_pred             EEEEEcCCC
Confidence            999998754

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.4e-15  Score=117.32  Aligned_cols=76  Identities=24%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             cccccCCCCC---CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQL---SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ++.|||+|++   ++|++|+++|++||+|.+|.+++.+ +++|||+|.+.++|.+|++.|||..|         .|++|+
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~-kg~afV~f~~~~~A~~ai~~lng~~l---------~g~~l~   71 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKL---------HGKPIR   71 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBC---------SSSBCE
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEecc-cceEEEEECCHHHHHHHHHHhCCCEE---------CCEEEE
Confidence            3568898884   3589999999999999999998754 45899999999999999999999985         699999


Q ss_pred             EeeccCCcc
Q 019494           84 ITYSAHTDL   92 (340)
Q Consensus        84 v~~s~~~~l   92 (340)
                      |+|++...+
T Consensus        72 v~~s~~~~~   80 (109)
T d2adca1          72 ITLSKHQNV   80 (109)
T ss_dssp             EECCSCCCC
T ss_pred             EEECCCCCC
Confidence            999986544

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.4e-16  Score=117.61  Aligned_cols=71  Identities=24%  Similarity=0.273  Sum_probs=62.6

Q ss_pred             cccccCCCCC---CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQL---SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      .++|||+|++   ++|+||+++|++||+|.+|.+.    ++||||+|.+.++|++||+.|||+.|         .|++|+
T Consensus        15 ~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i~----rg~aFV~f~~~~~A~~Ai~~lng~~~---------~g~~l~   81 (98)
T d1wf2a_          15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH----KGFAFVQYVNERNARAAVAGEDGRMI---------AGQVLD   81 (98)
T ss_dssp             CCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEEE----TEEEEEEESSHHHHHHHHHTTTTCEE---------TTEECE
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEEe----CCeEEEEECCHHHHHHHHHHcCCCEE---------CCEEEE
Confidence            5689999985   3478899999999999999883    46899999999999999999999985         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |++++..
T Consensus        82 V~~a~~~   88 (98)
T d1wf2a_          82 INLAAEP   88 (98)
T ss_dssp             EEETTSC
T ss_pred             EEECCCC
Confidence            9998754

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.7e-15  Score=116.25  Aligned_cols=76  Identities=21%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...||||+|++.+  |+||+++|++||+|.+|.+++    +..++||||+|.+.++|++|++.|||..|         .|
T Consensus         7 ~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g   77 (99)
T d1whwa_           7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---------QG   77 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---------SS
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            4568999999854  999999999999999998875    34567899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|++++.+
T Consensus        78 r~i~V~~a~~~   88 (99)
T d1whwa_          78 RMLHVLPSTIK   88 (99)
T ss_dssp             CEEEEEECCCC
T ss_pred             EEEEEEECCCC
Confidence            99999998865

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-15  Score=114.37  Aligned_cols=76  Identities=16%  Similarity=0.284  Sum_probs=66.6

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...||||+|++.+  |+||+++|++||+|.++.++.    +..+++|||+|.+.++|++|++.|||..|         .|
T Consensus         4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~---------~g   74 (90)
T d1x5sa1           4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---------DG   74 (90)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---------TS
T ss_pred             CCCEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            3578999999954  999999999999999998765    34567899999999999999999999984         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|+++..+
T Consensus        75 ~~l~V~~a~~~   85 (90)
T d1x5sa1          75 RQIRVDQAGKS   85 (90)
T ss_dssp             CCCEEEEEECC
T ss_pred             EEEEEEEcCCC
Confidence            99999998754

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.5e-15  Score=113.17  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEEEEeee-------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~-------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      |||+|++.+  |++|+++|++||+|.+|.+.+.       .+++||||+|.+.++|++|++.|||..+         .|+
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~---------~g~   71 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---------DGH   71 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---------TTE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEE---------CCE
Confidence            577777743  8999999999999999988752       2356899999999999999999999884         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++++..
T Consensus        72 ~i~V~~a~~~   81 (85)
T d2cpfa1          72 KLEVRISERA   81 (85)
T ss_dssp             ECEEECSSCS
T ss_pred             EEEEEECCCC
Confidence            9999998643

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-15  Score=117.37  Aligned_cols=75  Identities=16%  Similarity=0.260  Sum_probs=65.4

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.+  |+||+++|+.||.|.++.++.    +..++||||+|.+.++|++|++.|||..|         .|+
T Consensus        18 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~---------~g~   88 (102)
T d2cpza1          18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---------GMK   88 (102)
T ss_dssp             TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------TTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEE---------CCE
Confidence            457999998854  899999999999999998765    23456899999999999999999999985         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|+|++.+
T Consensus        89 ~i~V~~a~~k   98 (102)
T d2cpza1          89 RLKVQLKRSK   98 (102)
T ss_dssp             ECEEECCCCS
T ss_pred             EEEEEEeCCC
Confidence            9999998865

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1e-15  Score=116.82  Aligned_cols=77  Identities=12%  Similarity=0.096  Sum_probs=66.2

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCc-eeEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~-V~~v~~~~-----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ++||||++++.+  |++|+++|+.||+ |.+|++++     +.+++||||+|.+.++|.+|++.|++..+.       +.
T Consensus         1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~-------~~   73 (96)
T d2disa1           1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ-------LW   73 (96)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC-------BT
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeE-------EC
Confidence            469999999965  9999999999996 88998875     235679999999999999999999876653       57


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      |++|+|+|++.+
T Consensus        74 g~~i~V~~A~p~   85 (96)
T d2disa1          74 GHQIAVDWAEPE   85 (96)
T ss_dssp             TBCCEEEESCSS
T ss_pred             CEEEEEEEcCCC
Confidence            999999999864

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-15  Score=115.59  Aligned_cols=75  Identities=12%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +.|+  |+||++++|+++|+++|++||+|+.+.|..+     ++|| |||+|.+.++|.+|++ ++|..|.|+   .|+|
T Consensus        21 ~~lf--VgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~-aFV~f~~~~~a~~al~-~~~~~l~G~---~i~V   93 (103)
T d1x4ba1          21 RKLF--IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF-GFVTFSSMAEVDAAMA-ARPHSIDGR---VVEP   93 (103)
T ss_dssp             TEEE--EECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSE-EEEECSSHHHHHHHHT-SCSEEETTE---EEEE
T ss_pred             CEEE--EeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCe-EEEEECCHHHHHHHHH-hCCCeECCE---EEEE
Confidence            4555  9999999999999999999999999998653     3576 9999999999999996 799999998   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      .+|+++.
T Consensus        94 ~~a~~ke  100 (103)
T d1x4ba1          94 KRAVARE  100 (103)
T ss_dssp             ECCSSCC
T ss_pred             EECcccC
Confidence            9988765

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.3e-15  Score=114.62  Aligned_cols=68  Identities=15%  Similarity=0.244  Sum_probs=60.8

Q ss_pred             EEeecCCCCCCHHHH---HHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          140 ASIENMQYAVTLDVL---HMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       140 v~v~nl~~~vt~~~L---~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      |||+|||+.+|+++|   +++|++||+|++|+|.+++        +| +|||+|++.++|.+|++.|||..|.|+   .|
T Consensus        11 vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g-~aFV~f~~~~~A~~Ai~~lng~~~~gr---~l   86 (89)
T d2cpia1          11 VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSA-SAYVTYIRSEDALRAIQCVNNVVVDGR---TL   86 (89)
T ss_dssp             EEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCE-EEEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred             EEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcce-EEEEecccchhHHHHHHHhCCCEECCE---EE
Confidence            559999999999999   7789999999999987532        24 499999999999999999999999999   99


Q ss_pred             EEE
Q 019494          209 HIS  211 (340)
Q Consensus       209 ~v~  211 (340)
                      +|+
T Consensus        87 kvS   89 (89)
T d2cpia1          87 KAS   89 (89)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            986

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.4e-16  Score=115.70  Aligned_cols=75  Identities=15%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ...|||+|++.+  |++|+++|++||+|.++.++.  ..+++||||+|.+.++|++|++.|||..|         .|++|
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~i   78 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL---------NDRKV   78 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEE---------TTEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEE---------CCEEE
Confidence            346899999854  899999999999999998876  23567899999999999999999999884         79999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        79 ~V~~a~~~   86 (89)
T d1cvja2          79 FVGRFKSR   86 (89)
T ss_dssp             EEEECCCT
T ss_pred             EEEECCCC
Confidence            99998854

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-15  Score=118.08  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=65.7

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      +..|||+|++.+  |++|+++|++||+|.+|++.+ +.+++||||+|.+.++|.+|++.|||..|         .|+.|+
T Consensus         7 ~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~---------~gr~l~   77 (114)
T d2f9da1           7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNV---------CNRYLV   77 (114)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEE---------CCEEEE
Confidence            446899999854  999999999999999998876 34577999999999999999999999985         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |.+++..
T Consensus        78 V~~a~~~   84 (114)
T d2f9da1          78 VLYYNAN   84 (114)
T ss_dssp             EEECCHH
T ss_pred             EEEcCCC
Confidence            9998643

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.2e-15  Score=114.40  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=65.3

Q ss_pred             cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +.|+  |+||++++|+++|+++|+.||+|++|+|..+     ++|+ |||+|.+.++|.+|++.+|+ .|.|+   .|+|
T Consensus        11 ~~lf--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~-afV~f~~~~~A~~Ai~~~~~-~l~Gr---~l~V   83 (103)
T d2cqda1          11 TKIF--VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY-GFVTMADRAAAERACKDPNP-IIDGR---KANV   83 (103)
T ss_dssp             SEEE--EECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSE-EEEEESSHHHHHHHHTCSSC-EETTE---ECEE
T ss_pred             cEEE--EeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCe-EEEEECCHHHHHHHHHHCCC-cCCCE---EEEE
Confidence            4455  9999999999999999999999999998753     3565 99999999999999999887 68888   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      +++....
T Consensus        84 ~~a~~~~   90 (103)
T d2cqda1          84 NLAYLGA   90 (103)
T ss_dssp             EESTTTC
T ss_pred             EEcCCCC
Confidence            9987543

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.4e-15  Score=115.94  Aligned_cols=69  Identities=17%  Similarity=0.209  Sum_probs=61.5

Q ss_pred             CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      .+++.|+|.++||+.++|+++|+++|++||.|++|++...+ + +|||+|.+.++|.+|++.|||+.|..+
T Consensus        16 ~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~k-~-~aFV~f~~~e~A~~A~~~lng~~i~~~   84 (101)
T d2cq2a1          16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-P-YSFARYRTTEESKRAYVTLNGKEVVDD   84 (101)
T ss_dssp             SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-S-CEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred             CCCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeeccCc-c-EEEEEECCHHHHHHHHHHhCCCCCCCC
Confidence            35788887777899999999999999999999999988765 4 599999999999999999999998654

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.5e-15  Score=109.96  Aligned_cols=69  Identities=14%  Similarity=0.240  Sum_probs=61.6

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+|+||++++|+++|+++|++||+|++++|..+     ++|+ |||+|.+.++|.+|++ +|++.|.|+   .|+|..|
T Consensus         3 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~-aFV~f~~~~~a~~al~-~~~~~i~Gr---~i~V~~A   76 (77)
T d1uawa_           3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLA-QSRHELDSK---TIDPKVA   76 (77)
T ss_dssp             EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSE-EEECCCCTTHHHHHHH-TTTCCCSSC---CCEEEEC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccce-EEEEECCHHHHHHHHH-cCCCEECCe---EEEEEEC
Confidence            459999999999999999999999999998653     3576 9999999999999997 699999999   8888765

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-15  Score=113.66  Aligned_cols=75  Identities=17%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...|||+|++.+  |+||+++|++||+|.+|.+++    +.+++||||+|.+.++|++|++.|||..|         .|+
T Consensus         5 ~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i---------~g~   75 (89)
T d2cqba1           5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------FGR   75 (89)
T ss_dssp             CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---------TTE
T ss_pred             CcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence            345899999854  899999999999999998875    34667899999999999999999999885         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|++++.+
T Consensus        76 ~l~v~~a~p~   85 (89)
T d2cqba1          76 TIRVNLAKPM   85 (89)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEeCCC
Confidence            9999999865

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.7e-15  Score=113.78  Aligned_cols=75  Identities=17%  Similarity=0.324  Sum_probs=66.4

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      .++|+  |+||+.++|+++|+++|+.||+|.+|+|+..     ++|+ |||+|.+.++|.+|++ |||..|.|+   .|+
T Consensus        18 ~~tif--V~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~-afV~F~~~e~a~~A~~-l~g~~~~G~---~l~   90 (101)
T d2cq4a1          18 ARTVF--CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI-AYVEFCEIQSVPLAIG-LTGQRLLGV---PII   90 (101)
T ss_dssp             HTEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCC-EEEEESCGGGHHHHHH-HTTEEETTE---EEE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccce-EEEEECCHHHHHHHHH-HCCCEECCE---EEE
Confidence            35666  8999999999999999999999999998753     3566 9999999999999995 999999998   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |.+++.+
T Consensus        91 V~~a~~~   97 (101)
T d2cq4a1          91 VQASQAE   97 (101)
T ss_dssp             EEEHHHH
T ss_pred             EEECCCC
Confidence            9998654

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3.6e-15  Score=108.30  Aligned_cols=69  Identities=13%  Similarity=0.230  Sum_probs=61.2

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+|+|||.++|+++|+++|+.||.|+.+.+...     .+|+ |||+|.+.++|.+|++ |||..|.|+   .|+|.+|
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~-afV~F~~~~~a~~al~-~~~~~l~gr---~i~V~~A   75 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF-GFVTFESEDIVEKVCE-IHFHEINNK---MVECKKA   75 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCE-EEEECSCHHHHHHHHH-CSSCCBTTB---CCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCce-eEEEECCHHHHHHHHh-cCCCEECCe---EEEEEEC
Confidence            569999999999999999999999999887532     2454 9999999999999996 999999999   9999875

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.3e-15  Score=116.56  Aligned_cols=75  Identities=23%  Similarity=0.254  Sum_probs=65.0

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ...|||++++.+  |++|+++|++||+|.+|.+++.    .+++||||+|.+.++|++|++.|||..|         .|+
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~---------~g~   78 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF---------SGR   78 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---------SSS
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence            446899998855  8999999999999999988762    2456899999999999999999999884         699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|+++..+
T Consensus        79 ~i~V~~a~~~   88 (104)
T d1p1ta_          79 ALRVDNAASE   88 (104)
T ss_dssp             CBEEEETTCT
T ss_pred             EEEEEECCCC
Confidence            9999998754

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=109.65  Aligned_cols=75  Identities=17%  Similarity=0.273  Sum_probs=64.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ++.|+  |+||++++|+++|+++|+.||.|++|+|..+.     +|+ |||+|.+.++|.+|++.  ++.|.|+   .|+
T Consensus         8 ~~~lf--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~-aFV~f~~~~~a~~al~~--~~~l~Gr---~i~   79 (90)
T d2cqga1           8 TSDLI--VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGF-GFVRFTEYETQVKVMSQ--RHMIDGR---WCD   79 (90)
T ss_dssp             CCCEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHHS--CEEETTE---EEE
T ss_pred             CCeEE--EECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCE-EEEEECCHHHHHHHHhc--CCccCCE---EeE
Confidence            44566  99999999999999999999999999987532     465 99999999999999984  4578888   999


Q ss_pred             EEeecCCC
Q 019494          210 ISYSRHTD  217 (340)
Q Consensus       210 v~~ak~~~  217 (340)
                      |.+++.+.
T Consensus        80 v~~a~~k~   87 (90)
T d2cqga1          80 CKLPNSKQ   87 (90)
T ss_dssp             EECCCTTC
T ss_pred             EEeCCCCC
Confidence            99987654

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-15  Score=107.84  Aligned_cols=68  Identities=15%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      |||+||++++|+++|+++|++||+|.+|.|..+     ++|+ |||+|.+.++|.+|++ +++..|.|+   .|+|..
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~-afV~f~~~~~a~~Al~-~~~~~l~Gr---~i~V~r   74 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGF-GFVLFKESESVDKVMD-QKEHKLNGK---VIDPKR   74 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSE-EEEEESSHHHHHHHHH-TCCCCBTTB---CCEECC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCce-EEEEECCHHHHHHHHh-cCCCEECCC---EEEeeE
Confidence            569999999999999999999999999998642     3576 9999999999999997 799999998   888753

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-15  Score=112.49  Aligned_cols=78  Identities=28%  Similarity=0.389  Sum_probs=65.2

Q ss_pred             CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE--------EEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494          134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA--------MFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCI  200 (340)
Q Consensus       134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~--------i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i  200 (340)
                      .+.+|+  |+||+.++|+++|+++|+.||.|..+.        +..     +.+|+ |||+|.++++|.+|++.|||..|
T Consensus         7 ~~~~i~--V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~-afV~f~~~~~a~~Ai~~l~g~~~   83 (101)
T d2cpea1           7 DNSAIY--VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD-ATVSYEDPPTAKAAVEWFDGKDF   83 (101)
T ss_dssp             CCCEEE--EECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSE-EEEEBSSHHHHHHHHHHHTTCEE
T ss_pred             CCCEEE--EECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccce-eeEEecCHHHHHHHHHHhCCCEE
Confidence            355666  999999999999999999999985432        222     22355 99999999999999999999999


Q ss_pred             CCCCccEEEEEeecCCC
Q 019494          201 YDGGFCKLHISYSRHTD  217 (340)
Q Consensus       201 ~~~~~~~l~v~~ak~~~  217 (340)
                      .|+   .|+|+||+.+.
T Consensus        84 ~gr---~i~V~~a~~~~   97 (101)
T d2cpea1          84 QGS---KLKVSLARKKP   97 (101)
T ss_dssp             TTE---ECEEECSSCCC
T ss_pred             CCE---EEEEEEcCCCC
Confidence            998   99999998654

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.8e-15  Score=113.22  Aligned_cols=77  Identities=23%  Similarity=0.292  Sum_probs=66.1

Q ss_pred             cccccccCCCCCCC--HHHHH----HhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            5 WPLSRKYLQWQLSA--SGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~----~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      ||+.+|||+|++.+  |+||+    ++|++||+|.+|.+.+ +..+++|||+|.+.++|.+|++.|||..+         
T Consensus         1 ~P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~---------   71 (91)
T d1nu4a_           1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF---------   71 (91)
T ss_dssp             CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE---------
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEE---------
Confidence            68899999999854  77775    5799999999998866 23456899999999999999999999884         


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .|+.|+|+||+.+
T Consensus        72 ~g~~l~v~~ak~~   84 (91)
T d1nu4a_          72 YDKPMRIQYAKTD   84 (91)
T ss_dssp             TTEECEEEECSSC
T ss_pred             CCEEEEEEEeCCC
Confidence            6999999999854

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.54  E-value=1.6e-15  Score=114.75  Aligned_cols=75  Identities=16%  Similarity=0.273  Sum_probs=65.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +.+|+  |+||+..+|+++|+++|++||.|+.+.|..    +++|+ |||+|.+.++|.+|++ |||..|.|+   .|+|
T Consensus        13 ~~~if--V~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~-afv~F~~~e~a~~Al~-~~g~~~~g~---~i~V   85 (91)
T d1fjeb1          13 PFNLF--IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKF-GYVDFESAEDLEKALE-LTGLKVFGN---EIKL   85 (91)
T ss_dssp             SEEEE--EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTE-EEEEESSHHHHHHHHH-GGGEEETTE---EEEE
T ss_pred             CcEEE--EeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEE-eEEeeCCHHHHHHHHh-cCCcEECCE---EEEE
Confidence            34555  999999999999999999999988877643    34576 9999999999999996 999999998   9999


Q ss_pred             EeecCC
Q 019494          211 SYSRHT  216 (340)
Q Consensus       211 ~~ak~~  216 (340)
                      ++|+.+
T Consensus        86 ~~ak~k   91 (91)
T d1fjeb1          86 EKPKGR   91 (91)
T ss_dssp             ECCCCS
T ss_pred             EecCCC
Confidence            998853

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.6e-15  Score=110.08  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=61.2

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +.|||+|++.+  |+||+++|++||.|.+++++.    +.++++|||+|.+.++|++|++.|||..+         .|++
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~---------~g~~   72 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI---------EGYT   72 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE---------TTEE
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEE---------CCEE
Confidence            35788888854  899999999999998876654    34567899999999999999999999984         6999


Q ss_pred             EEEeeccC
Q 019494           82 LRITYSAH   89 (340)
Q Consensus        82 l~v~~s~~   89 (340)
                      |+|++|+.
T Consensus        73 i~V~~a~P   80 (81)
T d2ghpa1          73 LVTKVSNP   80 (81)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEccC
Confidence            99999863

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.2e-15  Score=110.86  Aligned_cols=72  Identities=15%  Similarity=0.267  Sum_probs=60.9

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEE-EEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKI-TTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v-~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      |||+|++.+  |+||+++|++||+|.++ ++++    +.+++||||+|.+.++|++|++.|||..+         .|++|
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~---------~gr~l   71 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---------CNRPI   71 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---------TTEEC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEE---------CCEEE
Confidence            578888854  89999999999999765 5554    23567899999999999999999999884         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|+++..+
T Consensus        72 ~v~~a~~k   79 (83)
T d1x5ta1          72 TVSYAFKK   79 (83)
T ss_dssp             EEEESCCC
T ss_pred             EEEEecCC
Confidence            99998755

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=5.9e-15  Score=115.35  Aligned_cols=73  Identities=19%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      ..-|||+|++.+  |+||+++|++||+|.+|.+.+  .++||||+|.+.++|.+|++.|||..|         .|++|+|
T Consensus        10 ~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~--~kg~afV~f~~~~~A~~A~~~lng~~~---------~gr~l~v   78 (111)
T d1whxa_          10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKF---------HHVPLYL   78 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBS---------SSSBCEE
T ss_pred             CCEEEEECCCCCCCHHHHHhhhhccCCccEEEeec--cCceEEEEEcCHHHHHHHHHHHcCCcc---------CCCeEEE
Confidence            345899998844  899999999999999998754  456899999999999999999999985         6999999


Q ss_pred             eeccCC
Q 019494           85 TYSAHT   90 (340)
Q Consensus        85 ~~s~~~   90 (340)
                      +|+...
T Consensus        79 ~~a~~~   84 (111)
T d1whxa_          79 EWAPIG   84 (111)
T ss_dssp             EEEETT
T ss_pred             EECCCC
Confidence            998754

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.1e-14  Score=106.03  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY  212 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~  212 (340)
                      |+|+|||+++|+++|+++|+.||.|+.|++...+   .+ +|||+|++.++|.+|++ +|+..|.|+   .|.|+.
T Consensus         3 v~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~-~afV~F~~~~~a~~Al~-~~~~~i~g~---~i~V~~   73 (75)
T d2ghpa2           3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR-FARIEFARYDGALAAIT-KTHKVVGQN---EIIVSH   73 (75)
T ss_dssp             EEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSE-EEEEEESSHHHHHHHHT-TTTCEETTE---ECEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccccce-EEEEEEcchHHhHHHHH-hcCcEECCE---EEEEEE
Confidence            4599999999999999999999999999987543   24 59999999999999985 899999998   888874

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.2e-15  Score=109.32  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      |...|||++++.+  |++|+++|++||.|.+|.+++    +..++||||+|.+.++|++|++.|||..|         .|
T Consensus         8 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g   78 (83)
T d2cqca1           8 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------DG   78 (83)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence            4567999998854  999999999999999998875    23466899999999999999999999985         69


Q ss_pred             ceEEE
Q 019494           80 CTLRI   84 (340)
Q Consensus        80 ~~l~v   84 (340)
                      ++|+|
T Consensus        79 r~i~V   83 (83)
T d2cqca1          79 RRIRV   83 (83)
T ss_dssp             EEEEE
T ss_pred             EEeEC
Confidence            99887

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.5e-15  Score=108.39  Aligned_cols=63  Identities=16%  Similarity=0.170  Sum_probs=57.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG  203 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~  203 (340)
                      |+|+|||.++|+++|+++|+.||.|.++++...     .+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~lng~~~~Gr   68 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY-GFVDFDSPSAAQKAVTALKASGVQAQ   68 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSE-EEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccce-eEEEECCHHHHHHHHHHhCCCEECCE
Confidence            569999999999999999999999999988653     3465 99999999999999999999999887

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=3.6e-15  Score=111.43  Aligned_cols=74  Identities=14%  Similarity=0.202  Sum_probs=61.4

Q ss_pred             cccccCCCCCC---CHHHHHHhhcccCceeEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            7 LSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         7 ~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~-----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ..+|||+|++.   +|++|+++|++||+|.+|.+..     +.++++|||+|.+.++|.+|++ |||..+         .
T Consensus         4 ~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~---------~   73 (86)
T d2ghpa3           4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLL---------G   73 (86)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEE---------T
T ss_pred             CCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEE---------C
Confidence            45788888763   4667999999999999998754     2456789999999999999995 999884         6


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      |++|+|++|+.+
T Consensus        74 gr~l~V~~a~~k   85 (86)
T d2ghpa3          74 NREISVSLADKK   85 (86)
T ss_dssp             TEEEEEEECCCC
T ss_pred             CEEEEEEEcCCC
Confidence            999999998754

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.4e-15  Score=108.67  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=60.3

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +||||++++.+  |++|+++|++||+|.++++.+    +.+++||||+|.|.++|++|++ +|+..         +.|++
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~---------i~Gr~   70 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHE---------LDSKT   70 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCC---------CSSCC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCE---------ECCeE
Confidence            58999998854  899999999999999998866    3467799999999999999996 78887         46999


Q ss_pred             EEEeec
Q 019494           82 LRITYS   87 (340)
Q Consensus        82 l~v~~s   87 (340)
                      |+|..+
T Consensus        71 i~V~~A   76 (77)
T d1uawa_          71 IDPKVA   76 (77)
T ss_dssp             CEEEEC
T ss_pred             EEEEEC
Confidence            999865

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=106.48  Aligned_cols=69  Identities=12%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |||+|||.++|+++|+++|++||.|.++++..++     +|+ |||+|.+.++|.+|++ |||+.|.|+   .|+|..|
T Consensus         5 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~-afV~f~~~e~~~~al~-~~~~~l~Gr---~i~V~~A   78 (79)
T d1l3ka2           5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF-AFVTFDDHDSVDKIVI-QKYHTVNGH---NCEVRKA   78 (79)
T ss_dssp             EEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHH-CSCCEETTE---ECEEEEC
T ss_pred             EEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccE-EEEEEcCHHHHHHHHH-hCCCEECCE---EEEEEEC
Confidence            5599999999999999999999999999976532     355 9999999999999985 899999998   9999864

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.2e-15  Score=110.65  Aligned_cols=73  Identities=12%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ..+.|||.|++.+  |+||+++|++||. ..+.+.  ..+++|||+|.+.++|++|++.|||..|         .|++|+
T Consensus         4 ~s~~i~V~nLp~~~t~~~l~~lF~~~G~-~~~~~~--~~kg~afV~f~~~~~A~~Ai~~ln~~~~---------~G~~l~   71 (88)
T d1wg1a_           4 GSSGILVKNLPQDSNCQEVHDLLKDYDL-KYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSF---------RGKDLI   71 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSSCC-CCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred             CCCEEEEeCCCCccChHHHHHHHHhcCc-eeeeee--ccCCceEEEECCHHHHHHHHHHhCCCEE---------CCEEEE
Confidence            4568999999965  9999999999993 333332  2456899999999999999999999985         699999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |+|++.+
T Consensus        72 V~~a~~~   78 (88)
T d1wg1a_          72 VQLQPTD   78 (88)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCC
Confidence            9999765

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.52  E-value=6.2e-15  Score=120.07  Aligned_cols=73  Identities=15%  Similarity=0.233  Sum_probs=64.3

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .|||++++.+  |+||+++|++||+|.+|.+++.    .+++||||+|.+.++|.+||+.|||..|         .|++|
T Consensus        44 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~---------~gr~l  114 (139)
T d1u6fa1          44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---------LNKRL  114 (139)
T ss_dssp             EEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---------SSCEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEE---------CCEEE
Confidence            5899999854  8999999999999999988762    3467899999999999999999999985         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus       115 ~V~~a~~~  122 (139)
T d1u6fa1         115 KVALAASG  122 (139)
T ss_dssp             EEEESSCC
T ss_pred             EEEEcCCC
Confidence            99998754

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-14  Score=107.32  Aligned_cols=72  Identities=15%  Similarity=0.278  Sum_probs=62.6

Q ss_pred             cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +.|+  |+||+.++|+++|+++|++||+|.+|+|..++     +|+ |||+|.+.++|.+|++ +++..|.|+   .|+|
T Consensus         7 ~~lf--V~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~-afV~f~~~~~a~~ai~-~~~~~i~Gr---~i~V   79 (84)
T d1l3ka1           7 RKLF--IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF-GFVTYATVEEVDAAMN-ARPHKVDGR---VVEP   79 (84)
T ss_dssp             GEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHH-TCSCEETTE---ECEE
T ss_pred             cEEE--EECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccE-EEEEEcCHHHHHHHHH-hCCCEECCE---EEEE
Confidence            4455  99999999999999999999999999986532     455 9999999999999997 699999998   8999


Q ss_pred             Eeec
Q 019494          211 SYSR  214 (340)
Q Consensus       211 ~~ak  214 (340)
                      ..|.
T Consensus        80 ~~A~   83 (84)
T d1l3ka1          80 KRAV   83 (84)
T ss_dssp             EECC
T ss_pred             Eeee
Confidence            8654

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.7e-14  Score=104.86  Aligned_cols=70  Identities=13%  Similarity=0.084  Sum_probs=59.0

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS   87 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s   87 (340)
                      |||+|++.+  |+||+++|++|| |..+.+.  ..+++|||+|.+.++|++|++.|||..+         .|++|+|+++
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~~--~~~g~afv~f~~~~~A~~Ai~~ln~~~~---------~g~~l~V~~a   68 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD--KYKGTAFVTLLNGEQAEAAINTFHQSRL---------RERELSVQLQ   68 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTEES---------SSCEEEEEEC
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceeec--ccceeEEEEECCHHHHHHHHHHhCCccC---------CCCEEEEEEe
Confidence            578888855  899999999999 4455443  3567899999999999999999999984         6999999999


Q ss_pred             cCCc
Q 019494           88 AHTD   91 (340)
Q Consensus        88 ~~~~   91 (340)
                      +.+.
T Consensus        69 ~~d~   72 (75)
T d1wi6a1          69 PTDA   72 (75)
T ss_dssp             CSTT
T ss_pred             CCCC
Confidence            7653

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=112.19  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      .+.|+  |+||+.++|+++|+++|+.||.|..+++....    +|+ |||+|.+.++|.+|++.|||..|.|+   .|+|
T Consensus        18 ~~~lf--V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~lng~~i~gr---~~~v   91 (101)
T d1x5oa1          18 PTNLY--ISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGV-GFARMESTEKCEAVIGHFNGKFIKTP---PGVS   91 (101)
T ss_dssp             TTEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEE-EEEEESCHHHHHHHHHHHBTCCCCCC---TTSC
T ss_pred             CCEEE--EeCCCCCCCHHHHHHHHhhcccccceeeecccccccccc-eeEEeCCHHHHHHHHHHhCCCEECCc---CCcc
Confidence            44555  99999999999999999999999999876543    345 99999999999999999999999998   7766


Q ss_pred             EeecC
Q 019494          211 SYSRH  215 (340)
Q Consensus       211 ~~ak~  215 (340)
                      ..+++
T Consensus        92 ~~~~P   96 (101)
T d1x5oa1          92 APTEP   96 (101)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            65543

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.7e-15  Score=110.37  Aligned_cols=74  Identities=12%  Similarity=0.060  Sum_probs=61.9

Q ss_pred             cccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            7 LSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         7 ~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ..-|||+|++.   +|+||+++|++||+|.+|.+++  ++++|||+|.+.++|.+|++.|++..+.       +.|++|+
T Consensus         8 sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~--~k~~afV~f~~~~~A~~A~~~l~~~~~~-------~~gr~l~   78 (89)
T d1x4da1           8 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPAL-------VFGKPVR   78 (89)
T ss_dssp             CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCE-------ETTEECE
T ss_pred             CcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeec--cceEEEEEEcchhhHHHHHHHHhhCCCc-------cCCceEE
Confidence            33479999984   3899999999999999999986  3457999999999999999988644332       5799999


Q ss_pred             EeeccC
Q 019494           84 ITYSAH   89 (340)
Q Consensus        84 v~~s~~   89 (340)
                      |+||+.
T Consensus        79 V~~s~~   84 (89)
T d1x4da1          79 VHLSQK   84 (89)
T ss_dssp             EEEECC
T ss_pred             EEECCC
Confidence            999984

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=6.6e-15  Score=106.83  Aligned_cols=69  Identities=12%  Similarity=0.107  Sum_probs=60.0

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ||||++++.+  |+||+++|+.||.|.++.+..    +..+++|||+|.+.++|++|++ |||..|         .|++|
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l---------~gr~i   70 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---------NNKMV   70 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCB---------TTBCC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEE---------CCeEE
Confidence            7899999954  999999999999999997755    3456789999999999999996 999884         69999


Q ss_pred             EEeec
Q 019494           83 RITYS   87 (340)
Q Consensus        83 ~v~~s   87 (340)
                      +|+++
T Consensus        71 ~V~~A   75 (75)
T d2msta_          71 ECKKA   75 (75)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99874

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.5e-15  Score=106.26  Aligned_cols=68  Identities=13%  Similarity=0.094  Sum_probs=58.8

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ||||+|++.+  |++|+++|++||+|.++.+.+    +.+++||||+|.|.++|++|++ +++..|         .|+.|
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l---------~Gr~i   70 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKL---------NGKVI   70 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCB---------TTBCC
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEE---------CCCEE
Confidence            6899999854  999999999999999998876    3466789999999999999996 788774         69999


Q ss_pred             EEee
Q 019494           83 RITY   86 (340)
Q Consensus        83 ~v~~   86 (340)
                      +|..
T Consensus        71 ~V~r   74 (75)
T d1hd0a_          71 DPKR   74 (75)
T ss_dssp             EECC
T ss_pred             EeeE
Confidence            8864

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.7e-15  Score=112.62  Aligned_cols=74  Identities=9%  Similarity=0.033  Sum_probs=62.2

Q ss_pred             ccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHH--hcCCCCCccCCCCCCCCc
Q 019494            6 PLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA--LDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         6 ~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~--lng~~i~~~~~~~~~~~~   80 (340)
                      +...|||+|++.   +|++|+++|++||+|.+|.+++  ++++|||+|.+.++|.+|++.  +++..         +.|+
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~--~k~~afV~f~~~~~A~~Ai~~~~~~~~~---------~~gr   85 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALW---------FQGR   85 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCC---------SSSS
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEee--cCCcEEEEecchHHHHHHHHHHhcCCce---------ECCE
Confidence            345689999963   4799999999999999999986  456899999999999999985  55555         5799


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|+|+||+.+
T Consensus        86 ~l~V~~s~~~   95 (99)
T d1x4fa1          86 CVKVDLSEKY   95 (99)
T ss_dssp             CCEEEEECSC
T ss_pred             EEEEEEcCCc
Confidence            9999999743

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1e-14  Score=112.89  Aligned_cols=75  Identities=11%  Similarity=0.078  Sum_probs=65.3

Q ss_pred             ccccccCCCCCCC-------HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            6 PLSRKYLQWQLSA-------SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         6 ~~~~~~l~~~~~~-------ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      ..++||+.|+..+       +++|+++|++||+|.++.+++  ++++|||+|.+.++|.+|++.|||..|         .
T Consensus         4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k--~~~~afV~f~~~~~A~~Ai~~lng~~~---------~   72 (104)
T d1weya_           4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEF---------L   72 (104)
T ss_dssp             CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEE---------T
T ss_pred             CCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEec--CCCEEEEEECCHHHHHHHHHHhccccc---------C
Confidence            4678999999843       357999999999999999886  456899999999999999999999985         6


Q ss_pred             CceEEEeeccCCc
Q 019494           79 PCTLRITYSAHTD   91 (340)
Q Consensus        79 ~~~l~v~~s~~~~   91 (340)
                      |++|+|+|++...
T Consensus        73 g~~l~v~~a~~~~   85 (104)
T d1weya_          73 GKEMKLYFAQTLH   85 (104)
T ss_dssp             TEECEEECCCCSS
T ss_pred             CCEeEEeecccCC
Confidence            9999999998553

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=110.81  Aligned_cols=75  Identities=12%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL  208 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l  208 (340)
                      ..+|+  |.||+.++|+++|+++|+.|| |++++++.+      .+|+ |||+|.+.++|.+|+ .||+..|.++   .|
T Consensus        15 ~~~v~--V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~-afV~f~~~e~a~~~~-~~~~~~~~gr---~l   86 (104)
T d1wi8a_          15 PYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNK---RI   86 (104)
T ss_dssp             CEEEE--EESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSC-EEEEESSHHHHHHHH-GGGTCEETTE---EC
T ss_pred             CCEEE--EeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCccee-eeEEECCHHHHHHHH-HcCCCEECCE---EE
Confidence            45555  999999999999999999999 777776532      2455 999999999998776 5999999998   99


Q ss_pred             EEEeecCCC
Q 019494          209 HISYSRHTD  217 (340)
Q Consensus       209 ~v~~ak~~~  217 (340)
                      +|.||+...
T Consensus        87 ~V~~a~~~~   95 (104)
T d1wi8a_          87 RVDVADQAQ   95 (104)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987654

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.2e-15  Score=115.22  Aligned_cols=76  Identities=18%  Similarity=0.155  Sum_probs=66.8

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      |..+|||+|++.+  |++|+++|+.||.|.++++..    +..++||||+|.+.++|.+|++.|||..|         .|
T Consensus        17 ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~---------~g   87 (102)
T d2cpxa1          17 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL---------YG   87 (102)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC---------SS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEE---------CC
Confidence            5678999999965  999999999999999886654    34667899999999999999999999884         69


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|+|++.+
T Consensus        88 ~~l~V~~ak~k   98 (102)
T d2cpxa1          88 KILVIEFGKNK   98 (102)
T ss_dssp             CBCEEEECCCC
T ss_pred             EEEEEEeCCCc
Confidence            99999999865

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.6e-15  Score=107.51  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+|+||++++|+++|+++|++||.|++|+|..+     ++|+ |||+|.+.++|.+|++. +++.|.|+   .|+|..|
T Consensus         2 lfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~-~FV~f~~~~~a~~al~~-~~~~i~g~---~i~vk~A   75 (75)
T d1x0fa1           2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF-CFITFKEEEPVKKIMEK-KYHNVGLS---KCEIKVA   75 (75)
T ss_dssp             EEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCC-EEEEESSSHHHHHHTTC-SSCCBTTB---CCEEECC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccE-EEEEECCHHHHHHHHhh-CCCEECCE---EeEEEEC
Confidence            569999999999999999999999999998643     3576 99999999999999975 77789988   7777654

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-14  Score=107.33  Aligned_cols=73  Identities=18%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      ...|||++++.+  |+||+++|++||.|..+.+.+  .++||||+|.+.++|.+|++.|||..|         .|+.|+|
T Consensus         8 ~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~~--~rg~afV~f~~~~~A~~Ai~~l~~~~i---------~g~~i~V   76 (86)
T d2cpda1           8 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVL---------DGSPIEV   76 (86)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEE---------TTEEEEE
T ss_pred             CCEEEEcCCCCCCCHHHHHHhhcccceeeeEEEcc--ccEEEEEEeCCHHHHHHHHHHcCCCEE---------CCEEEEE
Confidence            345899999954  899999999999998877644  456899999999999999999999884         6999999


Q ss_pred             eeccCC
Q 019494           85 TYSAHT   90 (340)
Q Consensus        85 ~~s~~~   90 (340)
                      +|++..
T Consensus        77 ~~akP~   82 (86)
T d2cpda1          77 TLAKPV   82 (86)
T ss_dssp             ECCCCC
T ss_pred             EeccCC
Confidence            999854

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-14  Score=112.64  Aligned_cols=74  Identities=9%  Similarity=0.098  Sum_probs=63.4

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.+  |+||+++|+.||+|.+|++++    +.+++||||+|.+.++|++|++.+|+ .         +.|+
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~---------l~Gr   79 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I---------IDGR   79 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E---------ETTE
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC-c---------CCCE
Confidence            357999999854  999999999999999999876    24677999999999999999998876 4         3699


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      +|+|+++..+
T Consensus        80 ~l~V~~a~~~   89 (103)
T d2cqda1          80 KANVNLAYLG   89 (103)
T ss_dssp             ECEEEESTTT
T ss_pred             EEEEEEcCCC
Confidence            9999998744

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-14  Score=108.73  Aligned_cols=76  Identities=13%  Similarity=0.036  Sum_probs=64.1

Q ss_pred             ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      +...++|||++++.  +|++|+++|+.||+|.+|.+++    +.+++||||+|.+.++|++|++.++  .         +
T Consensus         5 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~~~--~---------l   73 (90)
T d2cqga1           5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRH--M---------I   73 (90)
T ss_dssp             CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCE--E---------E
T ss_pred             CcCCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhcCC--c---------c
Confidence            35678899999984  4899999999999999998876    3456789999999999999998543  3         4


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .|+.|+|.++..+
T Consensus        74 ~Gr~i~v~~a~~k   86 (90)
T d2cqga1          74 DGRWCDCKLPNSK   86 (90)
T ss_dssp             TTEEEEEECCCTT
T ss_pred             CCEEeEEEeCCCC
Confidence            7999999998765

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-14  Score=111.39  Aligned_cols=72  Identities=14%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+|||+|++.+  |++|+++|++||+|.++++..   +.+++||||+|.+.++|++|++.|||+.|         .|+++
T Consensus        19 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i---------~gr~~   89 (101)
T d1x5oa1          19 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI---------KTPPG   89 (101)
T ss_dssp             TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCC---------CCCTT
T ss_pred             CEEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEE---------CCcCC
Confidence            57999999954  999999999999999998776   23466899999999999999999999985         57777


Q ss_pred             EEeecc
Q 019494           83 RITYSA   88 (340)
Q Consensus        83 ~v~~s~   88 (340)
                      +|..++
T Consensus        90 ~v~~~~   95 (101)
T d1x5oa1          90 VSAPTE   95 (101)
T ss_dssp             SCCCSS
T ss_pred             ccCCCC
Confidence            766544

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.3e-14  Score=108.48  Aligned_cols=84  Identities=12%  Similarity=0.064  Sum_probs=67.2

Q ss_pred             ccccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494            4 IWPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM   77 (340)
Q Consensus         4 ~~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~   77 (340)
                      +.....|||++++.+  |++|+++|++||+|.++.+..    +.+++||||+|.+.++|.+|++.||+.....   +..+
T Consensus         5 ~~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~---g~~~   81 (98)
T d1x4ha1           5 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG---GLKL   81 (98)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC---CEES
T ss_pred             CCCCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccC---CcEE
Confidence            445677999999954  999999999999999998865    2356789999999999999999998644210   1125


Q ss_pred             CCceEEEeeccCC
Q 019494           78 GPCTLRITYSAHT   90 (340)
Q Consensus        78 ~~~~l~v~~s~~~   90 (340)
                      .|++|+|++++.+
T Consensus        82 ~gr~l~v~~a~~k   94 (98)
T d1x4ha1          82 DGRQLKVDLAVTR   94 (98)
T ss_dssp             SSCEEEEECCCCC
T ss_pred             CCEEEEEEECCCC
Confidence            7899999998754

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.3e-14  Score=105.26  Aligned_cols=73  Identities=19%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +++|+  |+|||.++|+++|+++|+.||.|+.|+|...+    +|+ |||+|.+.++|.+|++ ++|..+.|+   .|+|
T Consensus         6 ~rtvf--V~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~-afV~f~~~e~a~~al~-~~~~~~~g~---~l~v   78 (85)
T d1zh5a2           6 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVE-TPGQKYKET---DLLI   78 (85)
T ss_dssp             TTEEE--EECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEE-EEEEESCHHHHHHHHT-CCCCEETTE---ECEE
T ss_pred             cCEEE--EECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceE-EEEEEcCHHHHHHHHH-HCCCEECCE---EEEE
Confidence            44555  99999999999999999999999999987543    355 9999999999999996 699999998   9999


Q ss_pred             Eeec
Q 019494          211 SYSR  214 (340)
Q Consensus       211 ~~ak  214 (340)
                      .|++
T Consensus        79 ~~~~   82 (85)
T d1zh5a2          79 LFKD   82 (85)
T ss_dssp             EEGG
T ss_pred             EEcC
Confidence            9864

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.7e-14  Score=108.75  Aligned_cols=74  Identities=14%  Similarity=0.242  Sum_probs=63.1

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCC-eeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCee--CCCCccEEEE
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCI--YDGGFCKLHI  210 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i--~~~~~~~l~v  210 (340)
                      |||+|||.++|+++|+++|+.||. |..|++..+      ++|+ |||+|.+.++|.+|++.|++..+  .++   .|+|
T Consensus         4 LyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~-aFV~F~~~~~A~~Ai~~l~~~~~~~~g~---~i~V   79 (96)
T d2disa1           4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH---QIAV   79 (96)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCE-EEEEESSHHHHHHHHTTTTTCCSCBTTB---CCEE
T ss_pred             EEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCe-EEEEEcCHHHHHHHHHHHcCCCeEECCE---EEEE
Confidence            559999999999999999999996 888887642      3465 99999999999999999976544  566   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      +||+++.
T Consensus        80 ~~A~p~~   86 (96)
T d2disa1          80 DWAEPEI   86 (96)
T ss_dssp             EESCSSC
T ss_pred             EEcCCCC
Confidence            9998754

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=9.7e-15  Score=109.29  Aligned_cols=69  Identities=14%  Similarity=0.080  Sum_probs=60.2

Q ss_pred             cccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494            9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus         9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      ||||++++.+  |+||+++|++||+|.++.+.+   .++|||+|.+.++|++||+.|||..|         .|+.|+|.+
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~---~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~i~v~~   69 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---DGTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEGETAY   69 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT---TSEEEEEESSHHHHHHHHHHHTTCBC---------CCTTSCCCB
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhcccccccccc---cceeeEEeCCHHHHHHHHHHhCCCEE---------CCcEeEEeE
Confidence            7888888843  899999999999999998764   25899999999999999999999995         688888887


Q ss_pred             ccC
Q 019494           87 SAH   89 (340)
Q Consensus        87 s~~   89 (340)
                      .+.
T Consensus        70 ~~~   72 (87)
T d3begb1          70 IRV   72 (87)
T ss_dssp             CEE
T ss_pred             Eec
Confidence            653

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2e-14  Score=107.25  Aligned_cols=73  Identities=16%  Similarity=0.290  Sum_probs=62.0

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEE-EEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v-~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ..+|+  |.|||+++|+++|+++|+.||.|.+. .+..+.    +|+ |||+|.+.++|.+|++.|||+.|.++   .|+
T Consensus         9 ~~~l~--v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~-afV~f~~~e~a~~Ai~~l~~~~l~gr---~i~   82 (86)
T d2cqpa1           9 PTIIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KVK   82 (86)
T ss_dssp             SEEEE--EESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEE-EEEEESCHHHHHHHHHHTTTCEETTE---ECE
T ss_pred             CCEEE--EECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceE-EEEEEcCcHHHHHHHHHcCCCEECCE---EEE
Confidence            44555  99999999999999999999998763 444322    355 99999999999999999999999998   999


Q ss_pred             EEee
Q 019494          210 ISYS  213 (340)
Q Consensus       210 v~~a  213 (340)
                      |+++
T Consensus        83 v~l~   86 (86)
T d2cqpa1          83 LVLG   86 (86)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9874

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.7e-14  Score=105.35  Aligned_cols=73  Identities=11%  Similarity=0.125  Sum_probs=62.3

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...+|||++++.+  |++|+++|+.||+|.+|.+++    +.+++||||+|.+.++|++|++ +++..|         .|
T Consensus         5 ~~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i---------~G   74 (84)
T d1l3ka1           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKV---------DG   74 (84)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEE---------TT
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEE---------CC
Confidence            3568999999954  999999999999999998876    3467799999999999999996 688774         69


Q ss_pred             ceEEEeecc
Q 019494           80 CTLRITYSA   88 (340)
Q Consensus        80 ~~l~v~~s~   88 (340)
                      +.|+|..|.
T Consensus        75 r~i~V~~A~   83 (84)
T d1l3ka1          75 RVVEPKRAV   83 (84)
T ss_dssp             EECEEEECC
T ss_pred             EEEEEEeee
Confidence            999998764

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.1e-14  Score=110.56  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=62.9

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..|||++++.+  |++|+++|+.||+|.+|++++    +.+++||||+|.+.|+|.+|++ |||..|         .|++
T Consensus        19 ~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g~~~---------~G~~   88 (101)
T d2cq4a1          19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRL---------LGVP   88 (101)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTTEEE---------TTEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHH-HCCCEE---------CCEE
Confidence            35899999854  999999999999999999986    3467789999999999999994 999884         6999


Q ss_pred             EEEeeccC
Q 019494           82 LRITYSAH   89 (340)
Q Consensus        82 l~v~~s~~   89 (340)
                      |+|++++.
T Consensus        89 l~V~~a~~   96 (101)
T d2cq4a1          89 IIVQASQA   96 (101)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEECCC
Confidence            99999864

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.7e-14  Score=110.31  Aligned_cols=74  Identities=9%  Similarity=0.091  Sum_probs=64.0

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..+|||++++.+  |+||+++|++||+|.++.+.+    +.+++||||+|.+.++|++|++ ++|..         +.|+
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~~~---------l~G~   89 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHS---------IDGR   89 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCSEE---------ETTE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHH-hCCCe---------ECCE
Confidence            367999999854  999999999999999998876    3467799999999999999995 78887         4799


Q ss_pred             eEEEeeccCC
Q 019494           81 TLRITYSAHT   90 (340)
Q Consensus        81 ~l~v~~s~~~   90 (340)
                      .|.|.+++.+
T Consensus        90 ~i~V~~a~~k   99 (103)
T d1x4ba1          90 VVEPKRAVAR   99 (103)
T ss_dssp             EEEEECCSSC
T ss_pred             EEEEEECccc
Confidence            9999998755

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.9e-14  Score=108.16  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=58.4

Q ss_pred             cccccCCCCCCC--HHHH---HHhhcccCceeEEEEeee-------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCC
Q 019494            7 LSRKYLQWQLSA--SGER---AHVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLP   74 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L---~~lF~~fG~V~~v~~~~~-------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~   74 (340)
                      -..+||++++.+  |+||   +++|++||+|.+|.+.+.       ..+++|||+|.+.++|.+|++.|||..+      
T Consensus         8 ~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~------   81 (89)
T d2cpia1           8 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV------   81 (89)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE------
T ss_pred             cCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEE------
Confidence            345798888744  6888   678999999999998762       1236899999999999999999999985      


Q ss_pred             CCCCCceEEEe
Q 019494           75 ENMGPCTLRIT   85 (340)
Q Consensus        75 ~~~~~~~l~v~   85 (340)
                         .|++|+|+
T Consensus        82 ---~gr~lkvS   89 (89)
T d2cpia1          82 ---DGRTLKAS   89 (89)
T ss_dssp             ---TTEEEEEE
T ss_pred             ---CCEEEEEC
Confidence               69999985

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.46  E-value=1.7e-14  Score=109.97  Aligned_cols=76  Identities=12%  Similarity=0.070  Sum_probs=65.4

Q ss_pred             cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ++..+|||+|++.+  |+||+++|+.||.|..+... +.+++||||+|.+.++|++|++.|||..|         .|++|
T Consensus        14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~~-~~~~~~afV~f~~~~~A~~A~~~l~~~~~---------~gr~i   83 (96)
T d1fjca_          14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQD-GKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSV   83 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEET-TEEEEEEEEEESSHHHHHHHHHHTTEEEE---------TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcccceeeeec-CccccEEEEEeCCHHHHHHHHHHcCCCEE---------CCEEE
Confidence            45678999999954  89999999999999877543 33567899999999999999999999884         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|+|++.+
T Consensus        84 ~V~~a~~k   91 (96)
T d1fjca_          84 SLYYTGEK   91 (96)
T ss_dssp             EEEECSSS
T ss_pred             EEEEeCCC
Confidence            99999865

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.6e-13  Score=105.90  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-C----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-K----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      +.+|+  |.|||+++|+++|+++|+.||.|..+.++. +    .+|+ |||+|.+.++|.+|++ +|+..|.++   .|+
T Consensus        15 ~~~v~--v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~-afV~F~~~e~a~~a~~-~~~~~i~gR---~i~   87 (104)
T d1wg5a_          15 DGFVR--LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE-AFVQFASQEIAEKALK-KHKERIGHR---YIE   87 (104)
T ss_dssp             CCEEE--EESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSE-EEEEESSHHHHHHHHT-TTTCCSSSS---CCE
T ss_pred             CcEEE--EeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceE-EEEEeCCHHHHHHHHh-hCCCEEcce---EEE
Confidence            44555  999999999999999999999988755432 2    2465 9999999999999996 899999999   999


Q ss_pred             EEeecCCCC
Q 019494          210 ISYSRHTDL  218 (340)
Q Consensus       210 v~~ak~~~~  218 (340)
                      |.+++....
T Consensus        88 V~~~~~~~~   96 (104)
T d1wg5a_          88 IFKSSRAEV   96 (104)
T ss_dssp             EEEECTTTS
T ss_pred             EEECCHHHh
Confidence            999877654

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.8e-14  Score=102.87  Aligned_cols=71  Identities=10%  Similarity=0.134  Sum_probs=60.7

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC   80 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~   80 (340)
                      ..||||++++.+  |+||+++|++||.|.++.+..    +.++++|||+|.|.|+|++|+ .|||..|         .|+
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al-~~~~~~l---------~Gr   71 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTV---------NGH   71 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH-HCSCCEE---------TTE
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHH-HhCCCEE---------CCE
Confidence            468999999954  999999999999999998765    235678999999999999999 4899884         699


Q ss_pred             eEEEeec
Q 019494           81 TLRITYS   87 (340)
Q Consensus        81 ~l~v~~s   87 (340)
                      +|+|+.|
T Consensus        72 ~i~V~~A   78 (79)
T d1l3ka2          72 NCEVRKA   78 (79)
T ss_dssp             ECEEEEC
T ss_pred             EEEEEEC
Confidence            9999864

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9e-14  Score=107.05  Aligned_cols=75  Identities=12%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI  210 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v  210 (340)
                      +.+|+  |.|||+++|+++|+++|+.|| |++|.+..+.    +|+ |||+|.+.++|++|++ ||+..|.++   .|+|
T Consensus        15 ~~~v~--v~nLp~~~te~dl~~~F~~~~-~~~v~~~~~~~g~~~G~-afVeF~~~~~a~~Al~-~~~~~i~gR---~I~V   86 (102)
T d1weza_          15 GHCVH--MRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHR---YVEL   86 (102)
T ss_dssp             SCEEE--EESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEE-EEEECSSSHHHHHHHT-TSSCCSSSS---CCEE
T ss_pred             CCEEE--EeCCCCcCCHHHHHHHHhccC-cceeeeEEecCCcceEE-EEEEECCHHHHHHHHH-cCCCEECCE---EEEE
Confidence            45655  999999999999999999998 4566665433    355 9999999999999986 899999999   9999


Q ss_pred             EeecCCC
Q 019494          211 SYSRHTD  217 (340)
Q Consensus       211 ~~ak~~~  217 (340)
                      .+++...
T Consensus        87 ~~s~~~~   93 (102)
T d1weza_          87 FLNSTAG   93 (102)
T ss_dssp             EEECCCC
T ss_pred             EEcCCCC
Confidence            9987654

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.1e-14  Score=108.02  Aligned_cols=76  Identities=21%  Similarity=0.249  Sum_probs=62.8

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEE--------EEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCcc
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKI--------TTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRY   71 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v--------~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~   71 (340)
                      ..++|||+|++.+  |+||+++|+.||+|..+        .+.+    +..+++|||+|.+.++|.+|++.|||..|   
T Consensus         7 ~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~---   83 (101)
T d2cpea1           7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF---   83 (101)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE---
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEE---
Confidence            4578999999954  99999999999998533        2222    23457899999999999999999999884   


Q ss_pred             CCCCCCCCceEEEeeccCC
Q 019494           72 LLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        72 ~~~~~~~~~~l~v~~s~~~   90 (340)
                            .|++|+|++++.+
T Consensus        84 ------~gr~i~V~~a~~~   96 (101)
T d2cpea1          84 ------QGSKLKVSLARKK   96 (101)
T ss_dssp             ------TTEECEEECSSCC
T ss_pred             ------CCEEEEEEEcCCC
Confidence                  6999999999854

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-14  Score=102.81  Aligned_cols=59  Identities=14%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSI   68 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i   68 (340)
                      |||++++.+  |++|+++|++||.|.++++.+    +..+++|||+|.+.++|++|++.|||+.|
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~   65 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV   65 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEE
Confidence            588888854  899999999999999998775    34667899999999999999999999985

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=4.7e-14  Score=107.93  Aligned_cols=72  Identities=13%  Similarity=0.002  Sum_probs=62.6

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ...+|||+|++.+  ++||+++|++||+|.++.+.+   +++|||+|.+.++|++||+.|||..+         .|+.|+
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~---~g~afV~f~~~~~a~~Ai~~lng~~~---------~g~~i~   81 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK---DGMGMVEYLRKEDMEYALRKLDDTKF---------RSHEGE   81 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEET---TTEEEEEESSHHHHHHHHHHHSSEEE---------ECTTSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhcccccccccc---cceEEEEECCHHHHHHHHHHhCCCEe---------CCeEEE
Confidence            3457999999844  899999999999999998763   35899999999999999999999985         699999


Q ss_pred             EeeccC
Q 019494           84 ITYSAH   89 (340)
Q Consensus        84 v~~s~~   89 (340)
                      |.|.+.
T Consensus        82 v~~~~~   87 (98)
T d1wg4a_          82 TSYIRV   87 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            999764

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.43  E-value=1.1e-14  Score=109.92  Aligned_cols=73  Identities=12%  Similarity=0.072  Sum_probs=62.7

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .+|||+|++.+  |++|+++|+.||.|.++.++.   +.+++||||+|.+.++|++|++ |||..|         .|++|
T Consensus        14 ~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~-~~g~~~---------~g~~i   83 (91)
T d1fjeb1          14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---------FGNEI   83 (91)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEE---------TTEEE
T ss_pred             cEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHh-cCCcEE---------CCEEE
Confidence            36899999954  999999999999998876654   4567799999999999999995 999984         69999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|++++.+
T Consensus        84 ~V~~ak~k   91 (91)
T d1fjeb1          84 KLEKPKGR   91 (91)
T ss_dssp             EEECCCCS
T ss_pred             EEEecCCC
Confidence            99998753

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3e-14  Score=103.57  Aligned_cols=69  Identities=13%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      ||||++++.  +|++|+++|++||+|.+|.+++    +.+++||||+|.+.++|++|++ +++..         +.|+.|
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~-~~~~~---------i~g~~i   70 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHN---------VGLSKC   70 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTT-CSSCC---------BTTBCC
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHh-hCCCE---------ECCEEe
Confidence            688988884  4899999999999999998876    3467789999999999999996 45555         468888


Q ss_pred             EEeec
Q 019494           83 RITYS   87 (340)
Q Consensus        83 ~v~~s   87 (340)
                      +|..+
T Consensus        71 ~vk~A   75 (75)
T d1x0fa1          71 EIKVA   75 (75)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            88754

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=108.53  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=62.5

Q ss_pred             EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCCh-HHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV-QTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~-~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      +++++|+||++.+|+++|+++|++||+|..|.|.+.+ | +|||+|.+. ++|.+|+..||+..|.++ ...+.+.+.
T Consensus        11 ~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~k-g-~gfV~F~~~~~~A~~a~~~~~~~~l~~~-~~~v~~~~~   85 (113)
T d1owxa_          11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-K-EGIILFKEKAKEALGKAKDANNGNLQLR-NKEVTWEVL   85 (113)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-S-EEEEEESSCHHHHHHHHHHTTTSCBCTT-SSSEEEEEC
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHhcCChheEEEecCC-c-eEEEEecCcHHHHHHHHHHhcCCceecC-ceEEEEeec
Confidence            5666799999999999999999999999999998765 5 599999986 789999999999999887 234444443

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.8e-14  Score=106.94  Aligned_cols=73  Identities=18%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      ..++|||++++.+  |+||+++|++||+|.+|++.+. +++||||+|.+.++|++|+.  ++..         +.|++|+
T Consensus         4 ~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~-~~gfafV~f~~~~~a~~a~~--~~~~---------i~g~~l~   71 (88)
T d1wf0a_           4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCG--EDLI---------IKGISVH   71 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTT--CEEE---------ETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEeec-cCceEEEEECCHHHHHHHHh--CCCE---------ECCEEeE
Confidence            4678999999854  9999999999999999987654 45689999999999999985  6655         4799999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |++++.+
T Consensus        72 v~~a~~k   78 (88)
T d1wf0a_          72 ISNAEPK   78 (88)
T ss_dssp             EECCCCC
T ss_pred             EEeCCCC
Confidence            9998754

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-13  Score=102.61  Aligned_cols=72  Identities=17%  Similarity=0.112  Sum_probs=61.5

Q ss_pred             cccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ...|||++++.+  |+||+++|+.||.|.+|++.+   +..+++|||+|.+.|+|.+|++ ++|..+         .|+.
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~-~~~~~~---------~g~~   75 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY---------KETD   75 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHT-CCCCEE---------TTEE
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHH-HCCCEE---------CCEE
Confidence            357899999854  899999999999999998876   2345789999999999999995 788874         6999


Q ss_pred             EEEeecc
Q 019494           82 LRITYSA   88 (340)
Q Consensus        82 l~v~~s~   88 (340)
                      |+|.+++
T Consensus        76 l~v~~~~   82 (85)
T d1zh5a2          76 LLILFKD   82 (85)
T ss_dssp             CEEEEGG
T ss_pred             EEEEEcC
Confidence            9999864

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=106.55  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494            6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG   78 (340)
Q Consensus         6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~-----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~   78 (340)
                      |..+|||.+++.+  |+||+++|+.|| |.+++++.     +..++||||+|.+.|+|++|+ .||+..|         .
T Consensus        14 p~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~---------~   82 (104)
T d1wi8a_          14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---------G   82 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---------T
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEE---------C
Confidence            4568999999854  999999999999 66666554     234568999999999998777 5999884         6


Q ss_pred             CceEEEeeccCC
Q 019494           79 PCTLRITYSAHT   90 (340)
Q Consensus        79 ~~~l~v~~s~~~   90 (340)
                      +++|+|++++.+
T Consensus        83 gr~l~V~~a~~~   94 (104)
T d1wi8a_          83 NKRIRVDVADQA   94 (104)
T ss_dssp             TEECEEEECCCC
T ss_pred             CEEEEEEECCCC
Confidence            999999998754

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=1.7e-13  Score=99.52  Aligned_cols=69  Identities=12%  Similarity=0.086  Sum_probs=57.1

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI   84 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v   84 (340)
                      -+||+|++.  ++++|+++|+.||+|.+|++.+  ....++|||+|.+.++|++|+ .+|++.|         +|++|.|
T Consensus         2 tv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al-~~~~~~i---------~g~~i~V   71 (75)
T d2ghpa2           2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVV---------GQNEIIV   71 (75)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEE---------TTEECEE
T ss_pred             EEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHH-HhcCcEE---------CCEEEEE
Confidence            356767664  3899999999999999998876  234458999999999999999 5899874         6999999


Q ss_pred             eec
Q 019494           85 TYS   87 (340)
Q Consensus        85 ~~s   87 (340)
                      +.+
T Consensus        72 ~~~   74 (75)
T d2ghpa2          72 SHL   74 (75)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            864

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.7e-13  Score=103.64  Aligned_cols=73  Identities=15%  Similarity=0.187  Sum_probs=62.2

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEE-EEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      |+|+|||+++|+++|+++|+.||.|..+. +..+    .+|+ |||+|.+.++|.+|++ |||..|.|+   .|+|.++.
T Consensus        11 v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~-afV~F~s~~~a~~Al~-~n~~~i~gr---~i~V~~~~   85 (103)
T d2cpya1          11 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQ-ALVQFKNEDDARKSER-LHRKKLNGR---EAFVHVVT   85 (103)
T ss_dssp             EEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSC-EEEECSSHHHHHHHGG-GCSEEETTE---EEEEEEEC
T ss_pred             EEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCcc-EEEEECCHHHHHHHHh-cCCCeECCc---EEEEEECC
Confidence            55999999999999999999999988744 4332    2566 9999999999999996 899999999   99999876


Q ss_pred             CCC
Q 019494          215 HTD  217 (340)
Q Consensus       215 ~~~  217 (340)
                      ...
T Consensus        86 ~~~   88 (103)
T d2cpya1          86 LED   88 (103)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-14  Score=109.98  Aligned_cols=70  Identities=14%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      ++|.++..++++|+|+++|++||+|++|+|.+..    +|+ |||+|.+.++|.+|++.|||..+.|+   .|+|+|+
T Consensus        30 ~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~-~fV~f~~~~~A~~Ai~~lng~~~~gr---~i~v~~s  103 (104)
T d1jmta_          30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN-VYVKFRREEDAEKAVIDLNNRWFNGQ---PIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECCEEEC
T ss_pred             HHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCCCEeeE-EEEEEechhHHHHHHHHHCCCEECCE---EEEEEEC
Confidence            3377888899999999999999999999997543    465 99999999999999999999999999   9999986

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-13  Score=105.12  Aligned_cols=70  Identities=16%  Similarity=0.112  Sum_probs=58.9

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      .+||.++..  +||+|+++|++||+|.+|++.+   +..+++|||+|.+.++|.+|++.|||+.+         .|++|+
T Consensus        29 ~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~---------~gr~i~   99 (104)
T d1jmta_          29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF---------NGQPIH   99 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEECC
T ss_pred             hHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEE---------CCEEEE
Confidence            345544433  2788999999999999999876   34568899999999999999999999985         699999


Q ss_pred             Eeec
Q 019494           84 ITYS   87 (340)
Q Consensus        84 v~~s   87 (340)
                      |+|+
T Consensus       100 v~~s  103 (104)
T d1jmta_         100 AELS  103 (104)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9986

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.4e-13  Score=102.41  Aligned_cols=71  Identities=17%  Similarity=0.158  Sum_probs=59.4

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEE-EEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKI-TTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v-~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      ..|||.|++.+  |+||+++|+.||.|.+. .+..   +.++++|||+|.+.|+|++|++.|||+.|         .|++
T Consensus        10 ~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l---------~gr~   80 (86)
T d2cqpa1          10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------GSRK   80 (86)
T ss_dssp             EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---------TTEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEE---------CCEE
Confidence            45899999854  99999999999999763 4443   23566899999999999999999999985         6999


Q ss_pred             EEEeec
Q 019494           82 LRITYS   87 (340)
Q Consensus        82 l~v~~s   87 (340)
                      |+|+++
T Consensus        81 i~v~l~   86 (86)
T d2cqpa1          81 VKLVLG   86 (86)
T ss_dssp             CEEEES
T ss_pred             EEEEEC
Confidence            999864

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.7e-12  Score=99.26  Aligned_cols=78  Identities=23%  Similarity=0.397  Sum_probs=65.2

Q ss_pred             CCcEEEEEeecC--CCCC---------CHHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeC
Q 019494          134 ESNVLLASIENM--QYAV---------TLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIY  201 (340)
Q Consensus       134 ~s~vl~v~v~nl--~~~v---------t~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~  201 (340)
                      .+++|+  |.|+  +.++         .+|+|++.|++||.|++|++..++ +|+ |||+|++.++|.+|++.|||..+.
T Consensus         7 ~~r~v~--l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~~~G~-~fV~f~~~e~A~~A~~~lng~~~~   83 (99)
T d2dita1           7 HERVVI--IKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGV-ASVSFRDPEEADYCIQTLDGRWFG   83 (99)
T ss_dssp             SCCEEE--EESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCE-EEEECSCHHHHHHHHHHSTTCEET
T ss_pred             CccEEE--EccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCCCccE-EEEEECCHHHHHHHHHHhCCcEEC
Confidence            477877  7898  3322         136799999999999999987654 576 999999999999999999999999


Q ss_pred             CCCccEEEEEeecCCC
Q 019494          202 DGGFCKLHISYSRHTD  217 (340)
Q Consensus       202 ~~~~~~l~v~~ak~~~  217 (340)
                      |+   .|+|+|...++
T Consensus        84 gr---~i~v~~~~g~~   96 (99)
T d2dita1          84 GR---QITAQAWDGTT   96 (99)
T ss_dssp             TE---ECEEEECCSCC
T ss_pred             CE---EEEEEEeCCcC
Confidence            99   99999976543

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.3e-12  Score=100.77  Aligned_cols=74  Identities=22%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT   81 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~   81 (340)
                      +.|||.+++-+  |+||+++|+.+|.|.+++++.    +..+++|||+|.+.|+|++|++ +|+..         +.++.
T Consensus        16 ~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~~---------i~gR~   85 (104)
T d1wg5a_          16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKER---------IGHRY   85 (104)
T ss_dssp             CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTCC---------SSSSC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCCE---------EcceE
Confidence            35788888743  899999999999998765443    3456789999999999999995 89987         47999


Q ss_pred             EEEeeccCCc
Q 019494           82 LRITYSAHTD   91 (340)
Q Consensus        82 l~v~~s~~~~   91 (340)
                      |+|.+++.++
T Consensus        86 i~V~~~~~~~   95 (104)
T d1wg5a_          86 IEIFKSSRAE   95 (104)
T ss_dssp             CEEEEECTTT
T ss_pred             EEEEECCHHH
Confidence            9999988664

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.7e-13  Score=103.41  Aligned_cols=63  Identities=13%  Similarity=0.157  Sum_probs=52.9

Q ss_pred             cccccccCC--CCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494            5 WPLSRKYLQ--WQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIP   69 (340)
Q Consensus         5 ~~~~~~~l~--~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~   69 (340)
                      .|...+||.  +++.  +|++|+++|++||.|.+|++.+  ++++|||+|.+.|+|.+|++.|||+.|.
T Consensus        16 ~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~--~k~~aFV~f~~~e~A~~A~~~lng~~i~   82 (101)
T d2cq2a1          16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV   82 (101)
T ss_dssp             SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred             CCCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeecc--CccEEEEEECCHHHHHHHHHHhCCCCCC
Confidence            355667774  3663  4899999999999999998876  4568999999999999999999999873

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.5e-13  Score=101.18  Aligned_cols=71  Identities=13%  Similarity=0.061  Sum_probs=57.9

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      -|||.+++-  +|+||+++|+.||.| +|.++.   +..++||||+|.+.++|++|++ ||+..|         .|+.|+
T Consensus        17 ~v~v~nLp~~~te~dl~~~F~~~~~~-~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~-~~~~~i---------~gR~I~   85 (102)
T d1weza_          17 CVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANM---------QHRYVE   85 (102)
T ss_dssp             EEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCS---------SSSCCE
T ss_pred             EEEEeCCCCcCCHHHHHHHHhccCcc-eeeeEEecCCcceEEEEEEECCHHHHHHHHH-cCCCEE---------CCEEEE
Confidence            478888874  389999999999854 565554   2346789999999999999985 899884         799999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |.+++..
T Consensus        86 V~~s~~~   92 (102)
T d1weza_          86 LFLNSTA   92 (102)
T ss_dssp             EEEECCC
T ss_pred             EEEcCCC
Confidence            9998865

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.8e-14  Score=106.59  Aligned_cols=67  Identities=15%  Similarity=0.277  Sum_probs=57.5

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEc----------CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~----------~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      |||+||++++|+++|+++|+.||.|..+.+..          +++|+ |||+|.+.++|.+|++ |||..+.|+   .|+
T Consensus         4 lyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~-afV~f~~~e~a~~a~~-l~g~~~~Gr---~l~   78 (90)
T d1u2fa_           4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNF-AFLEFRSVDETTQAMA-FDGIIFQGQ---SLK   78 (90)
T ss_dssp             EEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTE-EEEEESSCTTTTTGGG-GSSCCSSSS---CCC
T ss_pred             EEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceE-EEEEeCCHHHHHHHHh-hCCcEECCE---EEE
Confidence            55999999999999999999999887665421          33566 9999999999999985 999999999   887


Q ss_pred             EE
Q 019494          210 IS  211 (340)
Q Consensus       210 v~  211 (340)
                      |+
T Consensus        79 V~   80 (90)
T d1u2fa_          79 IR   80 (90)
T ss_dssp             CB
T ss_pred             EC
Confidence            75

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=3.2e-12  Score=93.93  Aligned_cols=68  Identities=16%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494          140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS  213 (340)
Q Consensus       140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a  213 (340)
                      |+|.+++++.+++.| +.|++||+|+++++.+.+ | +|||+|+++++|.+|++ +||..|.|+  +.|.|.-.
T Consensus         7 V~V~G~p~~~~~~il-~~F~~~G~I~~~~~~~~~-~-~~fV~f~~~~~A~~Al~-~nG~~~~g~--~~vgV~~~   74 (81)
T d1wwha1           7 VTVFGFPQASASYIL-LQFAQYGNILKHVMSNTG-N-WMHIRYQSKLQARKALS-KDGRIFGES--IMIGVKPC   74 (81)
T ss_dssp             EEEECCCGGGHHHHH-HHHHTTSCEEEEEECSSS-S-EEEEEESSHHHHHHHHT-TTTCEETTT--EECEEEEC
T ss_pred             EEEECCChHHHHHHH-HHHHhhhhhheEEecCCC-C-EEEEEEcccHHHHHHHh-cCCCeECCc--EEEEEEeC
Confidence            668899999887666 579999999999987655 5 59999999999999996 999999887  34456543

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7.5e-14  Score=104.93  Aligned_cols=71  Identities=17%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---------ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494            8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN   76 (340)
Q Consensus         8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---------~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~   76 (340)
                      .||||+|++.+  |+||+++|+.||.|.++.+..         ..+++||||+|.|.|+|++|++ |||..+        
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l~g~~~--------   72 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIF--------   72 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGG-GSSCCS--------
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHh-hCCcEE--------
Confidence            48999999954  899999999999887654431         3467789999999999999995 999985        


Q ss_pred             CCCceEEEeecc
Q 019494           77 MGPCTLRITYSA   88 (340)
Q Consensus        77 ~~~~~l~v~~s~   88 (340)
                       .|+.|+|+.++
T Consensus        73 -~Gr~l~V~r~k   83 (90)
T d1u2fa_          73 -QGQSLKIRRPH   83 (90)
T ss_dssp             -SSSCCCCBCTT
T ss_pred             -CCEEEEECCCC
Confidence             69999997543

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.9e-12  Score=100.08  Aligned_cols=75  Identities=5%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-EEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494          135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH  209 (340)
Q Consensus       135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~  209 (340)
                      ..+|+  |.|||+++|+++|+++|+.||.|..+. +....    .|+ |||+|.+.++|.+|++ |||..|.++   .|+
T Consensus        18 ~~~i~--v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~-afVeF~~~e~a~~al~-~~~~~i~gR---~i~   90 (112)
T d1wela1          18 GFCVY--LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE-GFVEFRNEADYKAALC-RHKQYMGNR---FIQ   90 (112)
T ss_dssp             CCEEE--EECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEE-EEEEBSSSHHHHHHHT-SCSBCSTTS---CBE
T ss_pred             CeEEE--EecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeE-EEEEECCHHHHHHHHH-cCCCcCCCE---EEE
Confidence            44555  899999999999999999999987643 33222    355 9999999999999996 899999999   999


Q ss_pred             EEeecCC
Q 019494          210 ISYSRHT  216 (340)
Q Consensus       210 v~~ak~~  216 (340)
                      |..+...
T Consensus        91 V~~~~~~   97 (112)
T d1wela1          91 VHPITKK   97 (112)
T ss_dssp             EEEECHH
T ss_pred             EEEcChH
Confidence            9877544

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.8e-12  Score=95.79  Aligned_cols=63  Identities=27%  Similarity=0.304  Sum_probs=56.4

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      ++||++.|++||+|.+|.+.++..+++|||+|.+.++|.+|++.|||+.+         .|++|+|+|...+
T Consensus        33 ~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~---------~gr~i~v~~~~g~   95 (99)
T d2dita1          33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF---------GGRQITAQAWDGT   95 (99)
T ss_dssp             HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE---------TTEECEEEECCSC
T ss_pred             HHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEE---------CCEEEEEEEeCCc
Confidence            36899999999999999988766677899999999999999999999985         6999999997643

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.5e-12  Score=97.19  Aligned_cols=79  Identities=18%  Similarity=0.240  Sum_probs=64.9

Q ss_pred             CCCcEEEEEeecC--CCCC--------CHHHHHHHHcccCCeeEEEEEcCC-------CCeEEEEEcCChHHHHHHHHHh
Q 019494          133 PESNVLLASIENM--QYAV--------TLDVLHMVFSAFGPVQKIAMFDKN-------GGLQALIQYPDVQTAVVAKEAL  195 (340)
Q Consensus       133 ~~s~vl~v~v~nl--~~~v--------t~~~L~~~F~~fG~v~~v~i~~~~-------~g~~afV~F~~~~~A~~A~~~l  195 (340)
                      +||++|.  +.|+  +..+        ..++|++.|++||.|++|+|.+..       .|+ +||+|.+.++|.+|++.|
T Consensus         2 ~Ps~vl~--l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~-vfV~f~~~e~A~~A~~~l   78 (104)
T d1o0pa_           2 HPTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK-IFVEFTSVFDCQKAMQGL   78 (104)
T ss_dssp             CCCSEEE--EESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCE-EEEEESCHHHHHHHHHHH
T ss_pred             CCCcEEE--EeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceE-EEEEECCHHHHHHHHHHH
Confidence            3688888  7798  3333        245789999999999999986522       254 999999999999999999


Q ss_pred             cCCeeCCCCccEEEEEeecCCC
Q 019494          196 EGHCIYDGGFCKLHISYSRHTD  217 (340)
Q Consensus       196 ng~~i~~~~~~~l~v~~ak~~~  217 (340)
                      ||..+.|+   .|++.|.....
T Consensus        79 ~Gr~f~gR---~v~v~f~~~~~   97 (104)
T d1o0pa_          79 TGRKFANR---VVVTKYCDPDS   97 (104)
T ss_dssp             SSCCSSSS---CCEEEEECHHH
T ss_pred             CCCEECCe---EEEEEEcCHHH
Confidence            99999999   99999987543

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.3e-12  Score=99.07  Aligned_cols=71  Identities=11%  Similarity=0.048  Sum_probs=58.6

Q ss_pred             ccCCCCCCC--HHHHHHhhcccCceeEE-EEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494           10 KYLQWQLSA--SGERAHVFSAFGFVHKI-TTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR   83 (340)
Q Consensus        10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v-~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~   83 (340)
                      |||+|++.+  |+||+++|+.||.|.++ ++..   +..+++|||+|.+.++|++|++ |||..|         .|+.|+
T Consensus        11 v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n~~~i---------~gr~i~   80 (103)
T d2cpya1          11 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LHRKKL---------NGREAF   80 (103)
T ss_dssp             EEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GCSEEE---------TTEEEE
T ss_pred             EEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cCCCeE---------CCcEEE
Confidence            788888844  89999999999999764 4333   3456789999999999999996 999874         799999


Q ss_pred             EeeccCC
Q 019494           84 ITYSAHT   90 (340)
Q Consensus        84 v~~s~~~   90 (340)
                      |..++..
T Consensus        81 V~~~~~~   87 (103)
T d2cpya1          81 VHVVTLE   87 (103)
T ss_dssp             EEEECHH
T ss_pred             EEECCHH
Confidence            9987643

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.2e-11  Score=92.79  Aligned_cols=63  Identities=17%  Similarity=0.233  Sum_probs=54.2

Q ss_pred             HHHHHHhhcccCceeEEEEeee------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494           19 SGERAHVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT   90 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~   90 (340)
                      .+||++.|++||+|.+|.+.+.      ...+++||+|.+.++|.+|++.|||+.+         .|++|.|.|....
T Consensus        28 ~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f---------~gR~v~v~f~~~~   96 (104)
T d1o0pa_          28 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF---------ANRVVVTKYCDPD   96 (104)
T ss_dssp             HHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCS---------SSSCCEEEEECHH
T ss_pred             HHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEE---------CCeEEEEEEcCHH
Confidence            3679999999999999998652      2346899999999999999999999984         7999999998643

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.1e-11  Score=93.55  Aligned_cols=68  Identities=9%  Similarity=0.093  Sum_probs=54.7

Q ss_pred             cCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCH-HHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494           11 YLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDT-ETASSAKNALDGRSIPRYLLPENMGPCTLRITYS   87 (340)
Q Consensus        11 ~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~-e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s   87 (340)
                      |+++++.  +|++|+++|++||+|.+|.+++  .+++|||+|.+. ++|..|+..||+..+.       +.+..+.+...
T Consensus        15 fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~--~kg~gfV~F~~~~~~A~~a~~~~~~~~l~-------~~~~~v~~~~~   85 (113)
T d1owxa_          15 FSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAKEGIILFKEKAKEALGKAKDANNGNLQ-------LRNKEVTWEVL   85 (113)
T ss_dssp             EEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCSEEEEEESSCHHHHHHHHHHTTTSCBC-------TTSSSEEEEEC
T ss_pred             EECCCCCCCCHHHHHHHHHhcCChheEEEec--CCceEEEEecCcHHHHHHHHHHhcCCcee-------cCceEEEEeec
Confidence            7777774  4899999999999999999986  456899999996 7899999999998864       34445555443

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.8e-11  Score=95.51  Aligned_cols=72  Identities=14%  Similarity=0.101  Sum_probs=57.8

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEe-e---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTF-E---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL   82 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~-~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l   82 (340)
                      .|||.|++-  +|+||+++|+.||.|.+++++ .   +..+++|||+|.+.++|++|++ |||..         ++|+.|
T Consensus        20 ~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~~~---------i~gR~i   89 (112)
T d1wela1          20 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY---------MGNRFI   89 (112)
T ss_dssp             EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC---------STTSCB
T ss_pred             EEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHH-cCCCc---------CCCEEE
Confidence            478877773  389999999999999764333 2   3456689999999999999995 99988         479999


Q ss_pred             EEeeccCC
Q 019494           83 RITYSAHT   90 (340)
Q Consensus        83 ~v~~s~~~   90 (340)
                      +|..+..+
T Consensus        90 ~V~~~~~~   97 (112)
T d1wela1          90 QVHPITKK   97 (112)
T ss_dssp             EEEEECHH
T ss_pred             EEEEcChH
Confidence            99887644

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.7e-11  Score=99.95  Aligned_cols=75  Identities=9%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494            6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP   79 (340)
Q Consensus         6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~   79 (340)
                      ...+|||++++.  +|++|+++|+.||+|.++.+.+    +..+++|||+|.|.++|.+|++ +++..         +.|
T Consensus        96 ~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~~~---------~~G  165 (183)
T d1u1qa_          96 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHT---------VNG  165 (183)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHT-SSCEE---------ETT
T ss_pred             ccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHH-hCCCe---------ECC
Confidence            446789988884  4899999999999999998876    2456689999999999999996 78876         469


Q ss_pred             ceEEEeeccCC
Q 019494           80 CTLRITYSAHT   90 (340)
Q Consensus        80 ~~l~v~~s~~~   90 (340)
                      ++|+|.++..+
T Consensus       166 ~~i~V~~A~~k  176 (183)
T d1u1qa_         166 HNCEVRKALSK  176 (183)
T ss_dssp             EEEEEEECCCH
T ss_pred             EEEEEEecCCc
Confidence            99999998644

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=2.1e-10  Score=83.95  Aligned_cols=70  Identities=16%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             cccCCCCCCC-HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc-eEEEee
Q 019494            9 RKYLQWQLSA-SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITY   86 (340)
Q Consensus         9 ~~~l~~~~~~-ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~-~l~v~~   86 (340)
                      .+++...+.+ .+++.+.|++||+|.++.+.+  ++++|||+|.+.++|++|++ +||+.|         +|+ -|.|..
T Consensus         6 wV~V~G~p~~~~~~il~~F~~~G~I~~~~~~~--~~~~~fV~f~~~~~A~~Al~-~nG~~~---------~g~~~vgV~~   73 (81)
T d1wwha1           6 WVTVFGFPQASASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALS-KDGRIF---------GESIMIGVKP   73 (81)
T ss_dssp             EEEEECCCGGGHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHT-TTTCEE---------TTTEECEEEE
T ss_pred             EEEEECCChHHHHHHHHHHHhhhhhheEEecC--CCCEEEEEEcccHHHHHHHh-cCCCeE---------CCcEEEEEEe
Confidence            3566666644 455667899999999998764  46789999999999999995 999985         565 456765


Q ss_pred             ccCC
Q 019494           87 SAHT   90 (340)
Q Consensus        87 s~~~   90 (340)
                      ...+
T Consensus        74 ~~~k   77 (81)
T d1wwha1          74 CIDK   77 (81)
T ss_dssp             CCCH
T ss_pred             CCCh
Confidence            5443

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.4e-06  Score=55.86  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=52.5

Q ss_pred             HHHHHHcccCCeeEEEEEcCCCC-eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494          153 VLHMVFSAFGPVQKIAMFDKNGG-LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR  214 (340)
Q Consensus       153 ~L~~~F~~fG~v~~v~i~~~~~g-~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak  214 (340)
                      .|.++|+++|.|.++.++.-++| ..|-|...+..+|..|+..|+.++|.++   +|.|+|+.
T Consensus        12 ~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~K---RI~Vs~~~   71 (73)
T d2dgxa1          12 LLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSK---KILVSLAT   71 (73)
T ss_dssp             HHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTE---EEEEEECC
T ss_pred             HHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCCe---EEEEEEec
Confidence            35678999999999999876654 4699999999999999999999999999   99999864

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.8e-05  Score=55.44  Aligned_cols=72  Identities=14%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             CCCcEEEEEeecCCCCC----C---HHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494          133 PESNVLLASIENMQYAV----T---LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF  205 (340)
Q Consensus       133 ~~s~vl~v~v~nl~~~v----t---~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~  205 (340)
                      |+.-++.|.+.+...+.    +   -++|.+.|+.||+|+-|+++..    ..+|.|.|-++|.+|++ ++|.++.|+  
T Consensus        13 PpDgTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~GeViLvRFv~d----~mwVTF~dG~SAL~al~-l~g~~v~G~--   85 (95)
T d1ufwa_          13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKGR--   85 (95)
T ss_dssp             CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETTE--
T ss_pred             CCCcEEEEEeccCCccccccCCHHHHHHHHHHHhhCCeEEEEEEeCC----eEEEEECCcHHHHHHhc-cCCeEEcce--
Confidence            45566776676532211    2   2468889999999999998864    59999999999999985 799999999  


Q ss_pred             cEEEEEe
Q 019494          206 CKLHISY  212 (340)
Q Consensus       206 ~~l~v~~  212 (340)
                       .|+|+.
T Consensus        86 -~l~It~   91 (95)
T d1ufwa_          86 -AVKISG   91 (95)
T ss_dssp             -EEEEEC
T ss_pred             -EEEEec
Confidence             999984

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00016  Score=49.59  Aligned_cols=60  Identities=22%  Similarity=0.285  Sum_probs=51.2

Q ss_pred             HHHHHhhcccCceeEEEEeeecC-CceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeecc
Q 019494           20 GERAHVFSAFGFVHKITTFEKTA-GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA   88 (340)
Q Consensus        20 e~L~~lF~~fG~V~~v~~~~~~~-~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~   88 (340)
                      +.|.++|+++|.|.++.+...++ ...|-|...+.++|..|+..|+-+.|         ++++|.|+|+.
T Consensus        11 q~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~Ki---------G~KRI~Vs~~~   71 (73)
T d2dgxa1          11 QLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI---------GSKKILVSLAT   71 (73)
T ss_dssp             HHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE---------TTEEEEEEECC
T ss_pred             HHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhc---------CCeEEEEEEec
Confidence            45778999999999999877433 23499999999999999999999884         79999999875

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00012  Score=52.77  Aligned_cols=53  Identities=23%  Similarity=0.320  Sum_probs=46.2

Q ss_pred             HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494           20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY   86 (340)
Q Consensus        20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~   86 (340)
                      ++|.+.|+.||+|.-|++..    ....|+|.|-++|.+|+ .++|.++         .|+.|+|+.
T Consensus        39 ~~Llq~l~~~GeViLvRFv~----d~mwVTF~dG~SAL~al-~l~g~~v---------~G~~l~It~   91 (95)
T d1ufwa_          39 TELMQTLGSYGTIVLVRINQ----GQMLVTFADSHSALSVL-DVDGMKV---------KGRAVKISG   91 (95)
T ss_dssp             HHHHHHHHHHSCCSEEEEET----TEEEEECSCSHHHHHHH-HGGGSEE---------TTEEEEEEC
T ss_pred             HHHHHHHhhCCeEEEEEEeC----CeEEEEECCcHHHHHHh-ccCCeEE---------cceEEEEec
Confidence            56889999999999999875    24999999999999999 5899985         699999874

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0074  Score=43.53  Aligned_cols=74  Identities=12%  Similarity=0.263  Sum_probs=57.2

Q ss_pred             EeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC------CeEEEEEcCChHHHHHHHHHhcCCeeCCC-C-ccEEEEEe
Q 019494          141 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG------GLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKLHISY  212 (340)
Q Consensus       141 ~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~------g~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~~l~v~~  212 (340)
                      .|.+||+++|++++.+.++..|++........+.      -..|+|.|.+.++...-.+..+|+.+.+. | ...-.|+|
T Consensus         5 VvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D~~g~~~~a~VE~   84 (91)
T d1uw4a_           5 VIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEF   84 (91)
T ss_dssp             EEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEE
T ss_pred             EEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEcCCCCEeeeEEEE
Confidence            3899999999999999999999988776654321      12599999999999999999999987543 2 22335666


Q ss_pred             ec
Q 019494          213 SR  214 (340)
Q Consensus       213 ak  214 (340)
                      |-
T Consensus        85 AP   86 (91)
T d1uw4a_          85 AP   86 (91)
T ss_dssp             CS
T ss_pred             cC
Confidence            53

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.49  E-value=0.16  Score=36.51  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             eecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc
Q 019494          142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE  196 (340)
Q Consensus       142 v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln  196 (340)
                      ....|......+|.++|+.||.|.---|- ..   .|||.-.++++|..+++.++
T Consensus        20 ~~tFP~~Wk~~dI~~lFSpfG~V~VswId-dT---Sa~V~L~~~e~~~~v~~~~~   70 (100)
T d1whva_          20 HVTFPKEWKTSDLYQLFSAFGNIQISWID-DT---SAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             EEECCTTCCHHHHHHHHTTTCSCCCEEEE-TT---EEEEECSCHHHHHHHHHHHH
T ss_pred             EEeCCcccchhHHHHHhcCCCceEEEEec-Cc---eEEEEecCHHHHHHHHHHhc
Confidence            45678899999999999999987643442 22   59999999999999998766

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.78  E-value=0.12  Score=37.14  Aligned_cols=42  Identities=26%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019494           19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD   64 (340)
Q Consensus        19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln   64 (340)
                      ..||.+||+.||.|.=.-|..    ..|||.-.+.|+|+.++..++
T Consensus        29 ~~dI~~lFSpfG~V~VswIdd----TSa~V~L~~~e~~~~v~~~~~   70 (100)
T d1whva_          29 TSDLYQLFSAFGNIQISWIDD----TSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             HHHHHHHHTTTCSCCCEEEET----TEEEEECSCHHHHHHHHHHHH
T ss_pred             hhHHHHHhcCCCceEEEEecC----ceEEEEecCHHHHHHHHHHhc
Confidence            589999999999987655532    249999999999999987655

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.34  Score=34.37  Aligned_cols=60  Identities=10%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             cccCCCCCC--CHHHHHHhhcccCceeEEEEeeec------CCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494            9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKT------AGFQALVQFSDTETASSAKNALDGRSI   68 (340)
Q Consensus         9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~------~~~~AFVeF~~~e~A~~Ai~~lng~~i   68 (340)
                      .+=|+.+|.  +|+++.+.++..|++.-....+++      .-.-|+|.|.+.++.....+.++|..+
T Consensus         3 KvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F   70 (91)
T d1uw4a_           3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF   70 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred             eEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence            334455553  388999999999998887766521      112299999999999999999999876